HHsearch results for GI: 254781112 and protein with PDBid: 3hv1_A
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=100.00 E-value=1.3e-42 Score=281.82 Aligned_cols=233 Identities=22% Similarity=0.336 Sum_probs=204.2
Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCC
Q ss_conf 88788589589996289987248704699848898852167899762998555668988988643103221100-00367
Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAIT 112 (274)
Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t 112 (274)
...++++++||||++.+||||+|. |++|++.||++|+++++++++|++++|+++||.+++.+|++|++|+++ ++..+
T Consensus 14 ~~~~~~~~~l~vg~~~~~pP~~~~--~~~g~~~G~~vdl~~~i~~~lg~~v~~~~~~~~~~~~~l~~g~~Di~~~~~~~~ 91 (268)
T 3hv1_A 14 WQTYTKEKKIKIGFDATFVPMGYE--EKDGSYIGFDIDLANAVFKLYGIDVEWQAIDWDMKETELKNGTIDLIWNGYSVT 91 (268)
T ss_dssp HHHHHHHTEEEEEECTEETTTEEE--CTTSCEECHHHHHHHHHHHTTTCEEEEEECCGGGHHHHHHHTSCSEECSSCBCC
T ss_pred HHHHHCCCEEEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999860997999987898895589--999988872999999999996996575158889999999869976002326678
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC---------CCCCCEEECCHHHHHHH
Q ss_conf 567542002333222222222111222211111233432023101012233201---------34542133685577775
Q gi|254781112|r 113 PERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE---------LKSHLVFSHNFEQSLQL 183 (274)
Q Consensus 113 ~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~---------~~~~~~~~~~~~~~~~~ 183 (274)
++|+..+.||.||+....++++|+++ .+++++||+|++||+..|+.+...+.. .+.+++.+.+..+++.+
T Consensus 92 ~~r~~~~~~s~py~~~~~~~v~~~~~-~~~~~~dl~~~~i~v~~gs~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 170 (268)
T 3hv1_A 92 DERKQSADFTEPYMVNEQVLVTKKSS-GIDSVAGMAGKTLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALID 170 (268)
T ss_dssp HHHHTTCEECCCCEEECEEEEEEGGG-CCCSSGGGTTCCEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHH
T ss_pred HHHHHCEEECCCCCCCCEEEEEECCC-CCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH
T ss_conf 54441156321213564368986899-99997895798238866850999999866555431667324403999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 54432100366558999999845876673262367768770799981899899999999999999798599999876788
Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
|.+||+|+++.+...+.+++++.+.... ..+.+......+++++++|++++|++.||++|.+|++||++++|++||||+
T Consensus 171 L~~grvD~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 249 (268)
T 3hv1_A 171 LNSGRIDGLLIDRVYANYYLEKSGVLDQ-YNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp HHHTSCSEEEEEHHHHHHHHHHTTCGGG-EEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred HHCCCEEEEEECHHHHHHHHHHCCCCCC-EEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 9769757999438999999985898883-033377777743899981899999999999999999787999999997789
Q ss_pred CCCCCCC
Q ss_conf 8775689
Q gi|254781112|r 264 NIISSVP 270 (274)
Q Consensus 264 d~~~~~~ 270 (274)
|+....+
T Consensus 250 d~~~~~~ 256 (268)
T 3hv1_A 250 DVATDQV 256 (268)
T ss_dssp CCCCTTT
T ss_pred CCCHHHC
T ss_conf 9993443