HHsearch results for GI: 254781112 and protein with PDBid: 3i6v_A
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Probab=100.00 E-value=1.2e-38 Score=257.37 Aligned_cols=221 Identities=23% Similarity=0.372 Sum_probs=190.6
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHH
Q ss_conf 9589996289987248704699848898852167899762998555668988988643103221100-003675675420
Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKY 119 (274)
Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~ 119 (274)
.+||||++++||||+|. |++|++.|+++|+++++++++|++++|++++|.+++..|++|++|+++ +.++|++|.+.+
T Consensus 5 ~tlrVg~~~~~pP~~~~--d~~g~~~G~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~D~i~~~~~~t~er~~~~ 82 (232)
T 3i6v_A 5 DTVRMGTEGAYPPYNFI--NDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVI 82 (232)
T ss_dssp -CEEEEECSEETTTEEE--CTTSCEESHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTS
T ss_pred CEEEEEECCCCCCEEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHHHCC
T ss_conf 95999987997993699--9999787759999999999849967999767488999986799779997786897898314
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 02333222222222111222211111233432023101012233201345421336855777755443210036655899
Q gi|254781112|r 120 DFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPF 199 (274)
Q Consensus 120 ~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~ 199 (274)
.||.||+.....+++++++ .+||+|. +++..++....++...+.+++.+++..+++++|.+||+|+++.+....
T Consensus 83 ~~s~p~~~~~~~~~~~~~~-----~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~grvD~~i~~~~~~ 156 (232)
T 3i6v_A 83 DFTQNYIPPTASSYVATSD-----GADLSGI-VAAQTATIQAGYIAESGATLVEFATPEETIAAVRNGEADAVFADRDYL 156 (232)
T ss_dssp EEEEEEECCCEEEEEESST-----TCCTTSE-EEEETTSHHHHHHHHSSSEEEEESSHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred CEECCEECCCCEEEEECCC-----HHHHCCC-CCEEECCHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECHHHH
T ss_conf 1403210266158998388-----6880786-020425317777635684589969989999999769950999728999
Q ss_pred HHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999984587667326236776877079998189989999999999999979859999987678887756898
Q gi|254781112|r 200 FNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNIISSVPG 271 (274)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~~~~~~ 271 (274)
.+++++.+.... .+........++++++++++++|++.||++|.+|++||++++|++||||+|+....-|
T Consensus 157 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~i~~kylg~d~~~~~~~ 226 (232)
T 3i6v_A 157 VPIVAESGGELM--FVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232)
T ss_dssp HHHHHHTTTSSE--EEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCCC--
T ss_pred HHHHHHCCCCEE--EECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 999986699719--9326777664179998089999999999999999968299999998779985646877