HHsearch results for GI: 254781112 and protein with PDBid: 3ix1_A
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=98.71 E-value=4.6e-09 Score=74.42 Aligned_cols=210 Identities=13% Similarity=0.012 Sum_probs=111.4
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHC--CCCHHHHHH
Q ss_conf 589996289987248704699848898852167899762998555668-98898864310322110000--367567542
Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNV--AITPERQKK 118 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~--~~t~eR~~~ 118 (274)
+++|+. +|-|. +++.++.+-.-+..+++.|++++++.. ++......|.+|++|+..+. .....|.+.
T Consensus 4 ~v~~~l--~w~p~--------~~~ap~~vA~~~G~f~~~Gl~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g 73 (302)
T 3ix1_A 4 TVEVML--DWYPN--------AVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKD 73 (302)
T ss_dssp EEEEEC--SSSCC--------GGGHHHHHHHHTTHHHHTTEEEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTT
T ss_pred CEEEEE--CCEEC--------CCCHHHHHHHHCCHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCC
T ss_conf 179984--88766--------06499999998893898497189995798059999997799898997758999987334
Q ss_pred HCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH----HHHCCCC---CCEEECCHHHHHHHHHHHH
Q ss_conf 002---33322222222211122221111123343202310101223----3201345---4213368557777554432
Q gi|254781112|r 119 YDF---SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSR----FAKELKS---HLVFSHNFEQSLQLLLSKR 188 (274)
Q Consensus 119 ~~f---s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~----~l~~~~~---~~~~~~~~~~~~~~l~~gr 188 (274)
... ...+......+++++++ .+++++||+||+||+..+...+. ++++.+. ++..+........+|.+|+
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~-~i~~~~DLkGK~v~~~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~~~~~~al~~G~ 152 (302)
T 3ix1_A 74 LPVVSVASVVRSPLNHVMFLAEQ-DFDSPADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFELGASIVSGR 152 (302)
T ss_dssp CCEEEEEEEECSCCEEEEEEGGG-CCSSGGGGTTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTCHHHHHHHSS
T ss_pred CCEEEEEEEECCCCCEEEEECCC-CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCC
T ss_conf 88589985405897369985377-98887895676221789977899999999972899761178458843899998599
Q ss_pred HHCCCCCHHHHHHH-HHHCCCCCCCEEECCCCCCC-CCEEEEEEC----CCHHHH----HHHHHHHHHHHHCC-HHHHHH
Q ss_conf 10036655899999-98458766732623677687-707999818----998999----99999999999798-599999
Q gi|254781112|r 189 TDATMIPDIPFFNF-LERRPHDGNLFKIADRMKDN-SAVAFMMRK----GNNKLT----RSINEILCAIHLDG-TYKKIF 257 (274)
Q Consensus 189 vD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k----~~~~L~----~~in~~l~~l~~~G-~~~~I~ 257 (274)
+|+++......... ++.................. ....++.++ ++|+.. ..+.++..-+.++. +..+++
T Consensus 153 iDa~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~v~~f~~A~~~a~~~~~~~p~ea~~~~ 232 (302)
T 3ix1_A 153 ADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWRAALKGYEWMVENPDEALNVL 232 (302)
T ss_dssp SSEEEEEETTTHHHHHHHTTCCEEEECGGGTTCCCCCSEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCEECCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCCCCEECCHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 77000654660899998628763222588709888766311046999987969999999999999999997999999999
Q ss_pred HHHCC
Q ss_conf 87678
Q gi|254781112|r 258 DRYFD 262 (274)
Q Consensus 258 ~kw~g 262 (274)
.+++.
T Consensus 233 ~~~~~ 237 (302)
T 3ix1_A 233 LTNQD 237 (302)
T ss_dssp HHTSC
T ss_pred HHHCC
T ss_conf 98575