HHsearch results for GI: 254781112 and protein with PDBid: 3kg2_A
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.66 E-value=4.8e-16 Score=117.58 Aligned_cols=221 Identities=16% Similarity=0.257 Sum_probs=146.3
Q ss_pred CCCEEEEECCCCCCEEEEEECC-----CCCEEEEEEEEHHHHHHHCCCCCCCCCC-------------CHHHHHHHHHCC
Q ss_conf 8958999628998724870469-----9848898852167899762998555668-------------988988643103
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDG-----RGELTGFDIDLIKEVAHRLNLKVEFFET-------------AVSGLITGLDTN 101 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~-----~g~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~~~~~~~l~~g 101 (274)
..+++|++- .+|||.+...+. ..++.||.+|+++.++++++++++++.. .|++++.++.+|
T Consensus 383 ~~~l~v~~~-~~~P~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~lnf~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~~ 461 (823)
T 3kg2_A 383 QKTVVVTTI-LESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYG 461 (823)
T ss_dssp CCCEEEEEC-CCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTT
T ss_pred CCCCCCCCC-CCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 741000554-5698199947888889986453576999999886459607999877787587658887514566432000
Q ss_pred CCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC------------------------------------
Q ss_conf 221100-0036756754200233322222222211122221111------------------------------------
Q gi|254781112|r 102 RYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSF------------------------------------ 144 (274)
Q Consensus 102 ~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~------------------------------------ 144 (274)
++|+.. ++++|++|.+.++||.||+.....+++++......++
T Consensus 462 ~~D~ai~~~~it~~r~~~v~fs~p~~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 541 (823)
T 3kg2_A 462 KADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYE 541 (823)
T ss_dssp SCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC------
T ss_pred CCCEEEEEEEECHHHHHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 23469999997078751224353114533699997577777208898703638999999999999999999999855464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254781112|r 145 -------------------------------------------------------------------------------- 144 (274)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (274)
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~p~s~~~R~l~~~~~l~~lil~~~Y~a~L~s~lt~~~~~ 621 (823)
T 3kg2_A 542 WHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV 621 (823)
T ss_dssp -----------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 31400025655555421110069999999999986677643346568999999999999999999998777521345457
Q ss_pred ------CCCCC---CCEEEECCCHHHHHHHCCCC--------------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf ------12334---32023101012233201345--------------42133685577775544321003665589999
Q gi|254781112|r 145 ------KDLTD---KTVAQILGTDLSRFAKELKS--------------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFN 201 (274)
Q Consensus 145 ------~dL~g---~~V~~~~g~~~~~~l~~~~~--------------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~ 201 (274)
+||.. ..++...++....++++... ......+..+++..+..++.++++..+.....
T Consensus 622 ~~i~sl~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 701 (823)
T 3kg2_A 622 SPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNE 701 (823)
T ss_dssp CCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHH
T ss_pred CCCCCHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHH
T ss_conf 89789999974788559996470799999865526799999986324742235899999999972698689996279999
Q ss_pred HHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 998458766732623677687707999818998999999999999997985999998767888
Q gi|254781112|r 202 FLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
|..+... .......+.....+++++++|++| +++.+|+.|.++.++|-++.+.+|||..-
T Consensus 702 y~~~~~~--~~~~~~~~~~~~~~~~~~~~k~Sp-~~~~~n~~i~~l~e~Gl~~~~~~~~~~~~ 761 (823)
T 3kg2_A 702 YIEQRKP--CDTMKVGGNLDSKGYGIATPKGSS-LGTPVNLAVLKLSEQGLLDKLKNKWWYDK 761 (823)
T ss_dssp HHHTSTT--CCEEEESCCSSCEEECCEEETTCS-SHHHHHHHHHHHHHTTHHHHHHHHHHTTS
T ss_pred HHHHCCC--CCEEEECCCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 9996179--885995861456617999899884-18999999999974789999999888757