HHsearch results for GI: 254781112 and protein with PDBid: 3myu_A
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium}
Probab=98.52 E-value=1.9e-08 Score=70.53 Aligned_cols=214 Identities=12% Similarity=0.082 Sum_probs=117.6
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCC--CCC-CCCCHHHHHHHHHCCCCCCCH--HCCCCH
Q ss_conf 589589996289987248704699848898852167899762998--555-668988988643103221100--003675
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLK--VEF-FETAVSGLITGLDTNRYDVLV--NVAITP 113 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~--~~~-~~~~~~~~~~~l~~g~~D~~~--~~~~t~ 113 (274)
+..+|++++.+++- +.+.++-+.--+.+.+.+++|.+ |++ +..++...+++|.+|++|++. ..++-.
T Consensus 6 ~~~~l~~~~~~~~~--------~~~~~~~~~~pl~~~Ls~~l~~~V~V~~~~~~Dy~~~ieal~~g~~Dia~~gp~~yv~ 77 (344)
T 3myu_A 6 SDNTLIFNISLDHN--------ADTSIEKFFTVFSKKLSGKLNKKINVNFNIVDDSFTKINNIQANKADFAFVNSQAIAS 77 (344)
T ss_dssp --CEEEEEECCCTT--------GGGTHHHHHHHHHHHHHHHHTSCCEEEEEECCCHHHHHHHHHTTSCSEEEECGGGCCC
T ss_pred CCCCEEEEECCCCC--------CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHH
T ss_conf 88816999604888--------5788999999999999998689658999964879999999977995689979099997
Q ss_pred HHHHH-----------------------------------HCCCCCCC-------------------------CCCCCCC
Q ss_conf 67542-----------------------------------00233322-------------------------2222222
Q gi|254781112|r 114 ERQKK-----------------------------------YDFSIPYI-------------------------AHRVLLV 133 (274)
Q Consensus 114 eR~~~-----------------------------------~~fs~p~~-------------------------~~~~~~~ 133 (274)
.+.+. ..+..||. ....+++
T Consensus 78 a~~~~~~~~l~~~~~~~~~d~~~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Y~~~I~ 157 (344)
T 3myu_A 78 NNWFGYTPLIQTLTTAFKEDLELDYYEDGNLQKKAEKTNLLFLSPPYKEWDDIKQKWTGNRYDFLYEPSKLVSFYRSMIL 157 (344)
T ss_dssp CTTSSEEEEEEEEEEEETTBCSCCCGGGTHHHHHHHHHHHHHHSSCGGGCCTTTTTBCSSSBGGGEEEEEEESEEEEEEE
T ss_pred HHHHCCCCHHHEEHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 56515530200001013455554222466312322221000124543334443223567554221024567663268999
Q ss_pred CCC---------CCCCCCCCCCCCCCCEEEEC-----CCHHH-HHHHCCCC---------CCEEECCHHHHHHHHHHHHH
Q ss_conf 111---------22221111123343202310-----10122-33201345---------42133685577775544321
Q gi|254781112|r 134 VRS---------DQQDIRSFKDLTDKTVAQIL-----GTDLS-RFAKELKS---------HLVFSHNFEQSLQLLLSKRT 189 (274)
Q Consensus 134 ~~~---------~~~~~~~~~dL~g~~V~~~~-----g~~~~-~~l~~~~~---------~~~~~~~~~~~~~~l~~grv 189 (274)
++. ....+++++||+|++|+... |+.+. .++.+.+. +.....+++..+..+.+|++
T Consensus 158 v~~~~~~~~~ikk~s~ik~l~DLkGk~iaf~d~~StSGyl~P~~~L~~~g~~~~~~~~~~~~~~~g~h~~~~~aV~~G~~ 237 (344)
T 3myu_A 158 ITGSASEITAIKKAWNEKNWNQFMKFGIGHGQTNSASRFELPDLLFRKHFAKNYPGLQNAINSDPDKFAVVRGREIGINK 237 (344)
T ss_dssp EEESHHHHHHHHHHHHHTCHHHHHTTCEEECCTTCTTTTHHHHHHHHHHHCTTCCCHHHHHHHCGGGEEECCGGGTTSST
T ss_pred EECCCHHHHHHHCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEEECCCCHHHHHHHHHCCCC
T ss_conf 80572011001036553788896698788348973122388999999814877761221144037857999999977998
Q ss_pred HCCCCCHH-----------HHHHHHHHCCCCCCCEEECC--CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 00366558-----------99999984587667326236--776877079998189-98999999999999997985999
Q gi|254781112|r 190 DATMIPDI-----------PFFNFLERRPHDGNLFKIAD--RMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKK 255 (274)
Q Consensus 190 D~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~ 255 (274)
|+.+.-.. .....+...+.....+++.. ++... ..++++++ ++++++.|-++|-.|.++++ .
T Consensus 238 Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~S~~iP~--~~i~v~~~L~~e~~~~I~~all~l~~~~e--~ 313 (344)
T 3myu_A 238 NIKIVFDDANSFSWTQNIKGSKRPFYTPIDPNDRLEILTYSDPLLY--DIGIVSNNLSRIYQKAIGEIFIELAQSSE--D 313 (344)
T ss_dssp TCCEEEEETTGGGGSCCCC---CCSSCCSSTTSEEEEEEEEEEEEC--CEEEEETTSCHHHHHHHHHHHHHHHHTTC--C
T ss_pred CEEEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC--CCEEEECCCCHHHHHHHHHHHHHHCCCCC--C
T ss_conf 8798733203443101310134554226565554489997899888--72899389999999999999996157853--5
Q ss_pred HHHHHCCCC
Q ss_conf 998767888
Q gi|254781112|r 256 IFDRYFDKN 264 (274)
Q Consensus 256 I~~kw~g~d 264 (274)
.+-..+|.|
T Consensus 314 ~~~~~~g~n 322 (344)
T 3myu_A 314 LYGPSIGYN 322 (344)
T ss_dssp SSGGGGTCC
T ss_pred CEEEECCCC
T ss_conf 142102657