Query gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 274 No_of_seqs 120 out of 6677 Neff 9.2 Searched_HMMs 23785 Date Wed Jun 1 01:39:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781112.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3hv1_A Polar amino acid ABC up 100.0 1.3E-42 0 281.8 13.9 233 34-270 14-256 (268) 2 3h7m_A Sensor protein; histidi 100.0 6.1E-43 0 283.9 11.7 226 36-265 6-233 (234) 3 3g41_A Amino acid ABC transpor 100.0 5.4E-42 0 278.0 14.5 231 34-266 3-236 (246) 4 2o1m_A Probable amino-acid ABC 100.0 2.3E-42 0 280.3 12.0 229 33-266 8-246 (258) 5 1xt8_A Putative amino-acid tra 100.0 2.4E-42 0 280.3 11.5 226 35-266 38-273 (292) 6 2vha_A Periplasmic binding tra 100.0 5.9E-42 0 277.8 11.4 233 32-268 8-254 (287) 7 2iee_A ORF2, probable ABC tran 100.0 1.3E-41 0 275.7 13.0 231 34-265 14-250 (271) 8 1wdn_A GLNBP, glutamine bindin 100.0 3.3E-41 1.4E-45 273.2 12.4 220 40-264 2-224 (226) 9 2pvu_A ARTJ; basic amino acid 100.0 3.8E-41 1.4E-45 272.8 12.2 224 37-265 38-265 (272) 10 3del_B Arginine binding protei 100.0 8E-41 2.8E-45 270.8 13.7 225 39-265 9-235 (242) 11 3mpk_A Virulence sensor protei 100.0 9.7E-41 4.2E-45 270.3 10.1 227 36-266 27-256 (267) 12 3kzg_A Arginine 3RD transport 100.0 2.3E-40 9.8E-45 267.9 10.3 222 40-263 2-231 (237) 13 1lst_A Lysine, arginine, ornit 100.0 1.7E-39 7.3E-44 262.6 10.9 225 40-266 3-236 (239) 14 3i6v_A Periplasmic His/Glu/Gln 100.0 1.2E-38 5E-43 257.4 14.3 221 41-271 5-226 (232) 15 1ii5_A Hypothetical protein SL 100.0 1.7E-38 7E-43 256.5 14.1 223 40-266 3-230 (233) 16 2q88_A EHUB, putative ABC tran 100.0 5.1E-39 2.1E-43 259.7 9.1 234 34-270 6-249 (257) 17 2v25_A Major cell-binding fact 100.0 3.6E-39 1.5E-43 260.6 8.2 217 34-260 31-257 (259) 18 3k4u_A Binding component of AB 100.0 1.9E-37 7.8E-42 250.0 12.9 223 38-264 2-230 (245) 19 3kbr_A Cyclohexadienyl dehydra 100.0 9.6E-37 4.1E-41 245.6 11.0 227 32-263 6-238 (239) 20 2pyy_A Ionotropic glutamate re 100.0 3.6E-36 1.5E-40 242.0 10.8 218 40-264 2-224 (228) 21 1pb7_A N-methyl-D-aspartate re 100.0 5.3E-36 2.2E-40 241.0 8.1 221 37-265 37-289 (292) 22 1mqi_A Glutamate receptor 2; G 100.0 1.6E-32 6.6E-37 219.5 10.1 222 40-266 3-260 (263) 23 2a5s_A N-methyl-D-aspartate re 100.0 2E-32 8.4E-37 218.9 10.6 199 63-263 55-280 (284) 24 1yae_A Glutamate receptor, ion 100.0 1.1E-32 4.4E-37 220.6 8.0 223 37-265 9-290 (312) 25 2rc8_A Glutamate [NMDA] recept 100.0 9.7E-32 4.1E-36 214.6 10.3 198 64-264 67-290 (294) 26 2v3u_A Glutamate receptor delt 100.0 5.6E-31 2.4E-35 209.9 10.7 220 41-266 3-262 (265) 27 3g3k_A Glutamate receptor, ion 100.0 2.7E-29 1.2E-33 199.5 9.9 221 39-266 2-257 (259) 28 3kg2_A Glutamate receptor 2; I 99.7 4.8E-16 2E-20 117.6 10.2 221 40-264 383-761 (823) 29 2ozz_A Hypothetical protein YH 99.4 9.7E-13 4.1E-17 97.1 6.3 179 72-259 33-221 (231) 30 3n5l_A Binding protein compone 99.3 8.8E-12 3.7E-16 91.2 6.9 210 39-260 2-241 (310) 31 3ksx_A Nitrate transport prote 99.0 2.5E-09 1.1E-13 76.0 10.6 211 33-264 21-260 (324) 32 2x26_A Periplasmic aliphatic s 98.8 6.3E-08 2.7E-12 67.4 10.8 207 40-264 2-234 (308) 33 3ix1_A N-formyl-4-amino-5-amin 98.7 4.6E-09 1.9E-13 74.4 3.0 210 42-262 4-237 (302) 34 3myu_A High affinity transport 98.5 1.9E-08 8.2E-13 70.5 1.7 214 39-264 6-322 (344) 35 2de3_A Dibenzothiophene desulf 98.5 2.7E-07 1.1E-11 63.4 7.0 188 74-264 39-301 (365) 36 3gxa_A Outer membrane lipoprot 98.3 7.6E-07 3.2E-11 60.7 4.7 204 35-267 17-259 (275) 37 1p99_A Hypothetical protein PG 98.1 2.5E-06 1.1E-10 57.4 4.2 214 33-270 31-282 (295) 38 1us5_A Putative GLUR0 ligand b 98.0 1E-06 4.3E-11 59.9 0.5 141 42-194 20-186 (314) 39 1xs5_A 29 kDa protein, membran 97.9 1.1E-05 4.6E-10 53.5 5.3 202 40-266 2-238 (241) 40 2zzv_A ABC transporter, solute 97.9 2.2E-05 9.4E-10 51.6 6.6 195 39-248 32-280 (361) 41 3hn0_A Nitrate transport prote 97.9 3.2E-05 1.3E-09 50.6 6.9 201 39-261 3-225 (283) 42 2hzl_A Trap-T family sorbitol/ 97.8 0.00015 6.5E-09 46.4 8.8 198 36-247 27-272 (365) 43 2pfy_A Putative exported prote 97.7 0.00032 1.3E-08 44.4 9.3 169 71-248 22-237 (301) 44 3ir1_A Outer membrane lipoprot 97.7 3.6E-05 1.5E-09 50.3 4.5 198 41-267 1-237 (245) 45 2pfz_A Putative exported prote 97.7 0.00036 1.5E-08 44.1 9.5 170 71-249 21-237 (301) 46 3fxb_A Trap dicarboxylate tran 97.7 0.00018 7.6E-09 46.0 7.9 193 37-245 11-250 (326) 47 3k2d_A ABC-type metal ION tran 97.6 0.00012 4.9E-09 47.1 6.4 202 39-261 4-236 (237) 48 3b50_A Sialic acid-binding per 97.5 0.00093 3.9E-08 41.6 10.0 171 71-248 23-242 (310) 49 2vpn_A Periplasmic substrate b 97.4 0.00047 2E-08 43.4 7.6 104 140-248 131-239 (316) 50 2g29_A Nitrate transport prote 97.3 0.00092 3.8E-08 41.6 8.1 211 39-265 31-293 (417) 51 2hxw_A Major antigenic peptide 96.9 0.0017 7.3E-08 39.9 5.9 181 71-260 17-227 (237) 52 2qpq_A Protein BUG27; alpha/be 96.9 0.006 2.5E-07 36.6 8.6 135 124-259 98-265 (301) 53 2nxo_A Hypothetical protein SC 96.7 0.0012 4.9E-08 41.0 3.8 181 81-264 32-236 (291) 54 2dvz_A BUGE, putative exported 96.7 0.011 4.8E-07 34.8 8.7 186 74-260 42-279 (314) 55 2i49_A Bicarbonate transporter 96.5 0.0047 2E-07 37.2 6.1 211 39-265 34-301 (429) 56 2hxr_A HTH-type transcriptiona 96.5 0.0059 2.5E-07 36.6 6.4 188 38-248 27-230 (238) 57 1zbm_A Hypothetical protein AF 96.3 0.01 4.3E-07 35.1 6.5 186 40-248 9-208 (280) 58 2fyi_A HTH-type transcriptiona 96.2 0.0024 1E-07 39.0 3.1 175 38-233 11-199 (228) 59 2rin_A Putative glycine betain 96.2 0.0031 1.3E-07 38.4 3.6 207 39-264 5-262 (298) 60 2f5x_A BUGD; periplasmic bindi 96.2 0.026 1.1E-06 32.7 8.2 190 74-265 40-279 (312) 61 1atg_A MODA, periplasmic molyb 96.0 0.0094 3.9E-07 35.4 5.1 188 71-265 16-229 (231) 62 1i6a_A OXYR, hydrogen peroxide 95.9 0.007 2.9E-07 36.2 4.3 197 40-258 4-216 (219) 63 3fxq_A LYSR type regulator of 95.8 0.036 1.5E-06 31.7 7.6 196 37-251 88-299 (305) 64 2hpg_A ABC transporter, peripl 95.8 0.024 1E-06 32.8 6.5 187 40-246 8-255 (327) 65 3oxn_A Putative transcriptiona 95.6 0.028 1.2E-06 32.4 6.4 192 39-250 17-225 (241) 66 3ho7_A OXYR; beta-alpha-barrel 95.5 0.0058 2.4E-07 36.7 2.6 189 39-248 9-211 (232) 67 2ql3_A Probable transcriptiona 95.5 0.0084 3.5E-07 35.7 3.3 174 40-233 4-192 (209) 68 3jv9_A OXYR, transcriptional r 95.5 0.053 2.2E-06 30.7 7.3 184 40-245 3-207 (219) 69 3l6g_A Betaine ABC transporter 95.4 0.039 1.6E-06 31.6 6.4 188 70-264 18-245 (256) 70 1ixc_A CBNR, LYSR-type regulat 94.8 0.18 7.5E-06 27.4 8.5 173 39-233 89-276 (294) 71 3fzv_A Probable transcriptiona 94.6 0.013 5.4E-07 34.5 2.2 173 40-233 94-281 (306) 72 2czl_A Hypothetical protein TT 94.4 0.056 2.4E-06 30.6 5.1 158 81-247 29-200 (272) 73 2b6d_A Lactotransferrin; compl 94.1 0.032 1.4E-06 32.0 3.3 127 73-204 17-212 (345) 74 1h3d_A ATP-phosphoribosyltrans 93.9 0.049 2.1E-06 30.9 4.0 183 71-265 19-233 (299) 75 2esn_A Probable transcriptiona 92.7 0.3 1.2E-05 26.1 6.4 162 70-236 117-294 (310) 76 2qry_A Thiamine-binding peripl 92.4 0.52 2.2E-05 24.6 9.8 211 36-261 18-282 (330) 77 1al3_A Cys regulon transcripti 92.3 0.16 6.7E-06 27.8 4.6 156 70-233 109-278 (324) 78 2b4l_A Glycine betaine-binding 91.8 0.034 1.4E-06 31.9 0.7 68 162-232 186-256 (268) 79 2h9b_A HTH-type transcriptiona 91.7 0.62 2.6E-05 24.1 9.3 154 71-233 107-277 (312) 80 3fd3_A Chromosome replication 91.4 0.44 1.8E-05 25.0 6.0 170 41-231 2-183 (208) 81 1twy_A ABC transporter, peripl 91.1 0.039 1.7E-06 31.5 0.4 97 39-149 26-139 (290) 82 1amf_A Molybdate transport pro 91.1 0.72 3E-05 23.7 8.2 185 71-264 19-231 (233) 83 3gzg_A Molybdate-binding perip 90.7 0.76 3.2E-05 23.6 6.6 183 71-263 39-250 (253) 84 1xvx_A YFUA; periplasmic iron 89.2 1 4.4E-05 22.7 9.8 185 71-259 20-263 (312) 85 1nh8_A ATP phosphoribosyltrans 88.6 0.12 4.8E-06 28.6 1.2 149 90-248 69-224 (304) 86 3kn3_A Putative periplasmic pr 87.4 1.2 5E-05 22.3 5.7 205 40-260 4-240 (242) 87 1gtk_A Porphobilinogen deamina 87.0 1.4 6E-05 21.9 7.0 158 93-265 65-242 (313) 88 1z7m_E ATP phosphoribosyltrans 86.6 0.22 9.2E-06 26.9 1.6 156 83-247 43-202 (208) 89 2vd3_A ATP phosphoribosyltrans 85.7 0.11 4.6E-06 28.8 -0.3 132 91-232 54-191 (289) 90 3ecr_A Porphobilinogen deamina 85.7 1.7 7E-05 21.5 6.9 201 41-264 22-263 (364) 91 3eki_A High affinity transport 83.4 0.24 1E-05 26.6 0.6 113 139-252 235-372 (403) 92 2h98_A HTH-type transcriptiona 83.2 2.1 9E-05 20.8 8.4 171 40-233 89-277 (313) 93 3omb_A Extracellular solute-bi 82.4 0.15 6.3E-06 27.9 -0.8 36 71-106 59-99 (535) 94 3lr1_A Tungstate ABC transport 79.9 1.8 7.6E-05 21.2 4.1 56 40-107 4-59 (236) 95 3muq_A Uncharacterized conserv 75.9 3.7 0.00015 19.3 4.9 186 67-260 19-235 (237) 96 1sbp_A Sulfate-binding protein 75.0 3.9 0.00016 19.2 9.2 176 79-260 31-258 (310) 97 1h76_A Serotransferrin; iron t 72.9 2.1 8.8E-05 20.9 2.8 125 74-203 360-551 (696) 98 1uth_A LYSR-type regulatory pr 72.9 4.3 0.00018 18.9 6.0 143 81-231 133-287 (315) 99 3m6m_D Sensory/regulatory prot 72.7 1.9 7.8E-05 21.2 2.5 56 141-196 6-66 (143) 100 3o66_A Glycine betaine/carniti 71.2 4.7 0.0002 18.6 6.9 208 38-264 6-278 (282) 101 1dcf_A ETR1 protein; beta-alph 70.4 2.2 9.4E-05 20.7 2.5 52 144-196 2-58 (136) 102 3mc2_A Inhibitor of carbonic a 68.7 3 0.00013 19.9 2.8 125 72-202 354-550 (687) 103 2v84_A Spermidine/putrescine A 68.1 5.5 0.00023 18.2 6.9 187 71-264 39-295 (343) 104 1sw5_A Osmoprotection protein 68.1 2.5 0.00011 20.3 2.4 208 38-264 3-271 (275) 105 1blf_A Lactoferrin; transferri 62.8 5.2 0.00022 18.4 3.1 127 72-203 357-552 (689) 106 2o7i_A Oligopeptide ABC transp 61.0 3.7 0.00015 19.3 2.1 24 84-107 210-234 (592) 107 1r9l_A Glycine betaine-binding 60.2 3.8 0.00016 19.2 2.1 55 41-108 8-63 (309) 108 2qsx_A Putative transcriptiona 58.2 8.4 0.00035 17.1 5.7 184 39-246 17-213 (218) 109 1cb6_A Protein (lactoferrin); 57.4 7.7 0.00032 17.3 3.3 125 73-202 358-553 (691) 110 3eod_A Protein HNR; response r 56.7 6.2 0.00026 17.9 2.7 51 147-197 5-60 (130) 111 2qmx_A Prephenate dehydratase; 55.3 5.5 0.00023 18.3 2.2 112 85-202 28-157 (283) 112 3h5i_A Response regulator/sens 51.6 7.9 0.00033 17.3 2.5 103 146-248 2-126 (140) 113 1vr5_A Oligopeptide ABC transp 50.7 6.4 0.00027 17.8 1.9 19 174-192 218-236 (547) 114 1zu0_A Chitin oligosaccharide 49.8 6.1 0.00026 18.0 1.7 18 90-107 202-219 (529) 115 2noo_A NIKA, nickel-binding pe 49.8 4.3 0.00018 18.9 1.0 81 170-262 195-284 (502) 116 2rjn_A Response regulator rece 48.9 10 0.00043 16.6 2.8 32 164-195 27-58 (154) 117 3c97_A Signal transduction his 48.2 12 0.00049 16.2 3.0 50 147-196 8-62 (140) 118 2grv_A LPQW; substrate-binding 46.2 5.5 0.00023 18.3 1.0 82 171-264 252-339 (621) 119 1jvn_A Glutamine, bifunctional 43.4 5 0.00021 18.5 0.5 16 180-196 353-368 (555) 120 2zay_A Response regulator rece 43.4 13 0.00054 16.0 2.6 101 147-247 6-129 (147) 121 2pt1_A Iron transport protein; 43.3 14 0.00059 15.7 2.8 57 36-107 14-74 (334) 122 3mwb_A Prephenate dehydratase; 42.7 14 0.00057 15.8 2.6 23 83-105 31-54 (313) 123 3i42_A Response regulator rece 42.3 13 0.00053 16.0 2.4 33 163-195 22-54 (127) 124 1ve4_A ATP phosphoribosyltrans 41.5 3.8 0.00016 19.2 -0.4 146 89-248 52-201 (206) 125 1nnf_A Iron-utilization peripl 41.5 15 0.00065 15.5 11.1 188 71-262 15-263 (309) 126 1pot_A POTD, spermidine/putres 41.4 15 0.00065 15.5 4.4 186 71-263 18-270 (325) 127 3kht_A Response regulator; PSI 40.0 14 0.00059 15.7 2.3 52 146-197 2-60 (144) 128 2a1h_A Branched chain aminotra 38.7 4.8 0.0002 18.6 -0.2 76 162-248 276-353 (365) 129 1jet_A OPPA, oligo-peptide bin 37.7 8.7 0.00037 17.0 1.0 80 171-262 223-308 (517) 130 2pju_A Propionate catabolism o 36.6 9.1 0.00038 16.9 0.9 155 71-249 26-197 (225) 131 2jba_A Phosphate regulon trans 36.4 12 0.00052 16.1 1.6 34 162-195 20-53 (127) 132 3kos_A HTH-type transcriptiona 34.4 20 0.00084 14.8 7.5 170 39-232 10-189 (219) 133 3cvg_A Putative metal binding 34.0 13 0.00056 15.9 1.5 30 80-109 52-81 (294) 134 2qmw_A PDT, prephenate dehydra 33.1 20 0.00085 14.7 2.3 22 84-105 29-51 (267) 135 1mvo_A PHOP response regulator 31.8 17 0.00073 15.1 1.7 84 162-245 21-120 (136) 136 3lte_A Response regulator; str 31.8 22 0.00093 14.5 2.6 34 162-195 24-57 (132) 137 2rdm_A Response regulator rece 31.3 22 0.00094 14.5 2.8 49 147-195 3-57 (132) 138 3c9h_A ABC transporter, substr 31.2 0.78 3.3E-05 23.5 -5.2 87 172-263 211-299 (355) 139 3hhg_A Transcriptional regulat 30.8 23 0.00096 14.4 6.4 146 94-247 131-293 (306) 140 3a10_A Response regulator; pho 30.6 20 0.00083 14.8 1.9 32 163-194 20-51 (116) 141 2qxy_A Response regulator; reg 30.1 21 0.0009 14.6 2.0 34 72-106 19-52 (142) 142 1mb3_A Cell division response 29.5 24 0.001 14.3 2.6 34 162-195 19-52 (124) 143 3hv2_A Response regulator/HD d 29.1 23 0.00096 14.4 2.0 88 161-248 31-135 (153) 144 3f6p_A Transcriptional regulat 29.0 25 0.001 14.2 2.5 35 162-196 20-54 (120) 145 3cg4_A Response regulator rece 29.0 19 0.0008 14.9 1.6 89 161-249 24-130 (142) 146 2pln_A HP1043, response regula 29.0 25 0.001 14.2 2.3 35 163-197 37-71 (137) 147 1xhf_A DYE resistance, aerobic 28.9 23 0.00096 14.4 1.9 33 163-195 22-54 (123) 148 2ayx_A Sensor kinase protein R 28.6 25 0.0011 14.2 2.4 107 144-250 124-251 (254) 149 1srr_A SPO0F, sporulation resp 27.6 26 0.0011 14.1 2.9 35 162-196 21-55 (124) 150 3c3m_A Response regulator rece 27.1 24 0.001 14.3 1.8 33 163-195 22-54 (138) 151 2qzj_A Two-component response 27.0 25 0.0011 14.2 1.9 33 163-195 23-55 (136) 152 1dc7_A NTRC, nitrogen regulati 26.9 19 0.00081 14.9 1.3 34 72-106 18-51 (124) 153 1o63_A ATP phosphoribosyltrans 26.8 6.7 0.00028 17.7 -1.1 117 84-208 40-161 (219) 154 3e13_X Putative iron-uptake AB 26.6 23 0.00097 14.4 1.6 39 70-108 16-58 (322) 155 3grc_A Sensor protein, kinase; 26.4 27 0.0011 14.0 1.9 35 162-196 24-58 (140) 156 2a9o_A Response regulator; ess 26.1 27 0.0012 13.9 1.9 33 163-195 20-52 (120) 157 3gt7_A Sensor protein; structu 25.9 26 0.0011 14.1 1.7 34 163-196 26-59 (154) 158 2pl1_A Transcriptional regulat 25.0 28 0.0012 13.9 1.8 34 162-195 18-51 (121) 159 3gl9_A Response regulator; bet 23.8 30 0.0013 13.7 1.8 34 163-196 21-54 (122) 160 2yvq_A Carbamoyl-phosphate syn 23.5 31 0.0013 13.6 2.0 43 149-193 50-101 (143) 161 1zh2_A KDP operon transcriptio 22.9 32 0.0013 13.5 1.9 35 162-196 19-53 (121) 162 1tmy_A CHEY protein, TMY; chem 22.9 32 0.0013 13.5 2.7 29 166-194 24-53 (120) 163 2j48_A Two-component sensor ki 22.0 33 0.0014 13.4 1.8 34 72-106 16-49 (119) 164 1zgz_A Torcad operon transcrip 21.2 35 0.0015 13.3 1.7 33 163-195 21-53 (122) 165 3m8u_A Heme-binding protein A; 20.9 28 0.0012 13.9 1.2 80 171-262 218-302 (522) 166 3hdg_A Uncharacterized protein 20.4 36 0.0015 13.2 2.2 36 162-197 25-60 (137) 167 2qr3_A Two-component system re 20.4 36 0.0015 13.2 1.8 35 161-195 20-54 (140) 168 2gkg_A Response regulator homo 20.2 35 0.0015 13.3 1.5 33 163-195 24-56 (127) 169 1dbw_A Transcriptional regulat 20.2 36 0.0015 13.2 2.6 34 162-195 21-54 (126) 170 1ryo_A Serotransferrin; iron t 20.1 36 0.0015 13.2 4.7 119 81-203 32-214 (327) No 1 >3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Probab=100.00 E-value=1.3e-42 Score=281.82 Aligned_cols=233 Identities=22% Similarity=0.336 Sum_probs=204.2 Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCC Q ss_conf 88788589589996289987248704699848898852167899762998555668988988643103221100-00367 Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAIT 112 (274) Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t 112 (274) ...++++++||||++.+||||+|. |++|++.||++|+++++++++|++++|+++||.+++.+|++|++|+++ ++..+ T Consensus 14 ~~~~~~~~~l~vg~~~~~pP~~~~--~~~g~~~G~~vdl~~~i~~~lg~~v~~~~~~~~~~~~~l~~g~~Di~~~~~~~~ 91 (268) T 3hv1_A 14 WQTYTKEKKIKIGFDATFVPMGYE--EKDGSYIGFDIDLANAVFKLYGIDVEWQAIDWDMKETELKNGTIDLIWNGYSVT 91 (268) T ss_dssp HHHHHHHTEEEEEECTEETTTEEE--CTTSCEECHHHHHHHHHHHTTTCEEEEEECCGGGHHHHHHHTSCSEECSSCBCC T ss_pred HHHHHCCCEEEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 999860997999987898895589--999988872999999999996996575158889999999869976002326678 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC---------CCCCCEEECCHHHHHHH Q ss_conf 567542002333222222222111222211111233432023101012233201---------34542133685577775 Q gi|254781112|r 113 PERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE---------LKSHLVFSHNFEQSLQL 183 (274) Q Consensus 113 ~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~---------~~~~~~~~~~~~~~~~~ 183 (274) ++|+..+.||.||+....++++|+++ .+++++||+|++||+..|+.+...+.. .+.+++.+.+..+++.+ T Consensus 92 ~~r~~~~~~s~py~~~~~~~v~~~~~-~~~~~~dl~~~~i~v~~gs~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 170 (268) T 3hv1_A 92 DERKQSADFTEPYMVNEQVLVTKKSS-GIDSVAGMAGKTLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALID 170 (268) T ss_dssp HHHHTTCEECCCCEEECEEEEEEGGG-CCCSSGGGTTCCEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHH T ss_pred HHHHHCEEECCCCCCCCEEEEEECCC-CCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH T ss_conf 54441156321213564368986899-99997895798238866850999999866555431667324403999999999 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC Q ss_conf 54432100366558999999845876673262367768770799981899899999999999999798599999876788 Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274) Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274) |.+||+|+++.+...+.+++++.+.... ..+.+......+++++++|++++|++.||++|.+|++||++++|++||||+ T Consensus 171 L~~grvD~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 249 (268) T 3hv1_A 171 LNSGRIDGLLIDRVYANYYLEKSGVLDQ-YNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268) T ss_dssp HHHTSCSEEEEEHHHHHHHHHHTTCGGG-EEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS T ss_pred HHCCCEEEEEECHHHHHHHHHHCCCCCC-EEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 9769757999438999999985898883-033377777743899981899999999999999999787999999997789 Q ss_pred CCCCCCC Q ss_conf 8775689 Q gi|254781112|r 264 NIISSVP 270 (274) Q Consensus 264 d~~~~~~ 270 (274) |+....+ T Consensus 250 d~~~~~~ 256 (268) T 3hv1_A 250 DVATDQV 256 (268) T ss_dssp CCCCTTT T ss_pred CCCHHHC T ss_conf 9993443 No 2 >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Probab=100.00 E-value=6.1e-43 Score=283.94 Aligned_cols=226 Identities=22% Similarity=0.360 Sum_probs=202.8 Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHH Q ss_conf 78858958999628998724870469984889885216789976299855566898898864310322110000367567 Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPER 115 (274) Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR 115 (274) .+.++++|+||++.+||||.|. |++|++.|+++|+++++++++|++++|+++||.+++..+++|++|++++++++++| T Consensus 6 ~~~~~~~i~v~~~~~~pP~~~~--~~~G~~~G~~~Dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~r 83 (234) T 3h7m_A 6 PRDRHRTIVVGGDRDYPPYEFI--DQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVLQGISWSEKR 83 (234) T ss_dssp -CCSSSCEEEEEETEETTTEEE--CTTSCEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEEEEEECCHHH T ss_pred HHHCCCCEEEEECCCCCCEEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCHHH T ss_conf 2456991999989998990799--99998887699999999999499669951799999999977997554210244433 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCC Q ss_conf 5420023332222222221112222111112334320231010122332013--45421336855777755443210036 Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATM 193 (274) Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~ 193 (274) ++.+.||.||+....++++++++..+++++||+|++||++.|+.+..++.+. +.+++.+++..+++++|.+||+|+++ T Consensus 84 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dl~~~~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~i 163 (234) T 3h7m_A 84 ARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAV 163 (234) T ss_dssp HTTEEEEEEEEEEEEEEEEESSSCCCSSGGGGTTSCEEEETTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEE T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCEEE T ss_conf 14346577644245499998403344786784698243437987999999732577158841157689999769956999 Q ss_pred CCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC Q ss_conf 655899999984587667326236776877079998189989999999999999979859999987678887 Q gi|254781112|r 194 IPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274) Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274) .+...+.+++++.+... ..+........+++++++|++++|++.||++|.+|++||++++|++||||.+- T Consensus 164 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~ky~G~~~ 233 (234) T 3h7m_A 164 VAMVPGMYIIRENRLTN--LVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVLE 233 (234) T ss_dssp EEHHHHHHHHHHTTCTT--EEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTCCC T ss_pred ECHHHHHHHHHHCCCCC--CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC T ss_conf 41788999998668875--41025677775289999589999999999999999969599999985379999 No 3 >3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A* Probab=100.00 E-value=5.4e-42 Score=278.05 Aligned_cols=231 Identities=19% Similarity=0.205 Sum_probs=202.3 Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCC Q ss_conf 88788589589996289987248704699848898852167899762998555668988988643103221100-00367 Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAIT 112 (274) Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t 112 (274) ..+...+++|+||++++||||+|.+ ++|+++||++|+++++++++|++++|+.+||.+++..|++|++|+++ +++++ T Consensus 3 ~~~~~~~~~l~Vg~~~~~~P~~~~~--~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~d~i~~~~~~~ 80 (246) T 3g41_A 3 ESKIDRNRIWIVGTNATYPPFEYVD--AQGEVVGFDIDLAKAISEKLGKQLEVREFAFDALILNLKKHRIDAILAGMSIT 80 (246) T ss_dssp ----CCCCEEEEEECSCBTTTBEEC--TTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSSSEECSCCBCC T ss_pred CCHHCCCCCEEEEECCCCCCCEEEC--CCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC T ss_conf 1202058959999899889934899--99988872999999999996996699988989999999759988796623158 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEECCCHHHHHHHC-CCCCCEEECCHHHHHHHHHHHHHH Q ss_conf 56754200233322222222211122-2211111233432023101012233201-345421336855777755443210 Q gi|254781112|r 113 PERQKKYDFSIPYIAHRVLLVVRSDQ-QDIRSFKDLTDKTVAQILGTDLSRFAKE-LKSHLVFSHNFEQSLQLLLSKRTD 190 (274) Q Consensus 113 ~eR~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~dL~g~~V~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~grvD 190 (274) ++|++.+.||.||+.....++++++. ..+.+++||+|++||+..|+.++.++.+ .+.+++.+++..+++++|.+||+| T Consensus 81 ~~r~~~~~fs~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~Igv~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~L~~GriD 160 (246) T 3g41_A 81 PSRQKEIALLPYYGDEVQELMVVSKRSLETPVLPLTQYSSVAVQTGTYQEHYLLSQPGICVRSFDSTLEVIMEVRYGKSP 160 (246) T ss_dssp HHHHTTSEEEEEECCCBCEEEEEEETTCCSCSCCGGGSSCEEEETTSHHHHHHHTSTTCCEEEESCHHHHHHHHHTTSSS T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCC T ss_conf 66603434342333334332112222344441001234058885153799999838875389834078788898759843 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC Q ss_conf 0366558999999845876673262367768770799981899899999999999999798599999876788877 Q gi|254781112|r 191 ATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274) Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274) +++.+...+.+++.+.+................+++++++|++++|++.||++|++|++||++++|++||+.+|+. T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~k~~~~L~~~in~~l~~~~~~G~~~~I~~ky~~~~~~ 236 (246) T 3g41_A 161 VAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLSEVA 236 (246) T ss_dssp EEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCTT T ss_pred HHHHCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 1130699999999854565302322587544303899996989999999999999999788999999987899867 No 4 >2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Probab=100.00 E-value=2.3e-42 Score=280.31 Aligned_cols=229 Identities=25% Similarity=0.346 Sum_probs=191.7 Q ss_pred CHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCC Q ss_conf 788788589589996289987248704699848898852167899762-998555668988988643103221100-003 Q gi|254781112|r 33 YPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVA 110 (274) Q Consensus 33 ~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~ 110 (274) ..+..++.++|+||++.+||||+|. |++|++.||++|+++++++++ |++++|++++|++++..|++|++|+++ +++ T Consensus 8 ~~a~~~~~~~i~V~~~~~~pP~~~~--~~~g~~~G~~vDl~~~ia~~l~g~~v~~~~~~~~~~~~~l~~g~~D~i~~~~~ 85 (258) T 2o1m_A 8 TGAGQKKVQTITVGTGTQFPNICFI--DEKGDLTGYDVELIKELDKRLPHYKFTFKTMEFSNLLVSLGQHKVDIVAHQME 85 (258) T ss_dssp ------CCEEEEEEECSEETTTEEE--CTTSCEESHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSSSEEEEEEC T ss_pred CCCCCCCCCEEEEEECCCCCCEEEE--CCCCCEEEHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCC T ss_conf 6554566998999989997980699--99996887599999999987289858999789999999997799888963476 Q ss_pred CCHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCC-------CCCEEECCHHHHHH Q ss_conf 6756754200233322222-222211122221111123343202310101223320134-------54213368557777 Q gi|254781112|r 111 ITPERQKKYDFSIPYIAHR-VLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELK-------SHLVFSHNFEQSLQ 182 (274) Q Consensus 111 ~t~eR~~~~~fs~p~~~~~-~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~-------~~~~~~~~~~~~~~ 182 (274) +|++|++.+.||.|++... ..++++++...+++++||+|++||+..|+.+...+++.. ..+..+.+.+++++ T Consensus 86 ~~~er~~~~~fs~~~~~~~~~~~~~~~~~~~i~~~~dL~gk~igv~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258) T 2o1m_A 86 KSKEREKKFLFNKVAYNHFPLKITVLQNNDTIRGIEDLKGKRVITSATSNGALVLKKWNEDNGRPFEIAYEGQGANETAN 165 (258) T ss_dssp CCHHHHHHCEECSSCCEEEEEEEEEETTCCSCSSGGGCTTCEEEECSSSHHHHHHHHHHHHTTCCSEEEECCSSTTHHHH T ss_pred CCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHH T ss_conf 78788753136754223554289985136765515445798898707874999999999971887420103688999999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC Q ss_conf 55443210036655899999984587667326236776877079998189989999999999999979859999987678 Q gi|254781112|r 183 LLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFD 262 (274) Q Consensus 183 ~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g 262 (274) +|.+||+|+++.+.....+..++.+.. ..+...+....+++++++|++++|+..||++|++|++||++++|++|||| T Consensus 166 ~L~~grvD~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~~L~~~ln~~l~~~~~dG~~~~I~~Kw~g 242 (258) T 2o1m_A 166 QLKSGRADATISTPFAVDFQNKTSTIK---EKTVGNVLSNAKVYFMFNKNEQTLSDDIDKALQEIIDDGTLKRLSLKWLG 242 (258) T ss_dssp HHHHTSCSBEEECHHHHHHHHHHCSSC---EEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC T ss_pred HHHCCCEEEEEECHHHHHHHHHHCCCC---EEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC T ss_conf 986595469991699999998527886---58815667775189999599999999999999999968599999998779 Q ss_pred CCCC Q ss_conf 8877 Q gi|254781112|r 263 KNII 266 (274) Q Consensus 263 ~d~~ 266 (274) +|+. T Consensus 243 ~d~~ 246 (258) T 2o1m_A 243 DDYS 246 (258) T ss_dssp TTC- T ss_pred CCCC T ss_conf 9888 No 5 >1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Probab=100.00 E-value=2.4e-42 Score=280.28 Aligned_cols=226 Identities=24% Similarity=0.410 Sum_probs=197.4 Q ss_pred HHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCC---CCCCCCCCCHHHHHHHHHCCCCCCCH-HCC Q ss_conf 87885895899962899872487046998488988521678997629---98555668988988643103221100-003 Q gi|254781112|r 35 FRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLN---LKVEFFETAVSGLITGLDTNRYDVLV-NVA 110 (274) Q Consensus 35 ~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg---~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~ 110 (274) ..+.++++||||+.++||||+|. |++|++.||++|++++|++++| ++++|++.+|.+++..+++|++|+++ +.+ T Consensus 38 ~~i~~~g~l~Vgv~~~~pP~~~~--d~~G~~~G~~~Dl~~~ia~~Lg~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~ 115 (292) T 1xt8_A 38 DKIKQNGVVRIGVFGDKPPFGYV--DEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFT 115 (292) T ss_dssp HHHHHHSSEEEEECSEETTTEEE--CTTSCEESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCB T ss_pred HHHHCCCEEEEEECCCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC T ss_conf 99860998999985898990699--9999887306899999999855897179999634786899998699771135565 Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC--CCCCEEECCHHHHHHHHHHHH Q ss_conf 675675420023332222222221112222111112334320231010122332013--454213368557777554432 Q gi|254781112|r 111 ITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL--KSHLVFSHNFEQSLQLLLSKR 188 (274) Q Consensus 111 ~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~gr 188 (274) +|++|++.+.||.||+.....++++++. .+++++||+|++||+..|+.++.++++. +.+++.+++.++++++|.+|| T Consensus 116 ~t~~R~~~~~fs~py~~~~~~~~~~~~~-~i~~~~dL~g~~V~v~~g~~~~~~l~~~~~~~~~v~~~~~~~~~~~l~~G~ 194 (292) T 1xt8_A 116 QTPQRAEQVDFCSPYMKVALGVAVPKDS-NITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKR 194 (292) T ss_dssp CCHHHHTTEEECCCCEEEEEEEEEETTC-CCCSSGGGTTSEEEEETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTS T ss_pred CCCCHHCCCCCCCCEEECCCEEEEECCC-CCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCC T ss_conf 6711210246675347415137872245-767477770066775158589999997100000000002220112443693 Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHH----HCCCC Q ss_conf 10036655899999984587667326236776877079998189989999999999999979859999987----67888 Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDR----YFDKN 264 (274) Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~k----w~g~d 264 (274) +|+++.+.....+++++.+.. .....++....+++++++|++++|++.||++|++|++||++++|++| |||.| T Consensus 195 vDa~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iav~k~~~~L~~~ln~~l~~l~~~G~~~~i~~k~~~k~fg~~ 271 (292) T 1xt8_A 195 GDALSHDNTLLFAWVKDHPDF---KMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDD 271 (292) T ss_dssp SSEEEEEHHHHHHHHHHCTTE---EEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTGGGSCTT T ss_pred EEEEEECHHHHHHHHHHCCCC---EEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC T ss_conf 699995699999999978997---89414678773399999799999999999999999977869999999988667999 Q ss_pred CC Q ss_conf 77 Q gi|254781112|r 265 II 266 (274) Q Consensus 265 ~~ 266 (274) +- T Consensus 272 ~~ 273 (292) T 1xt8_A 272 VK 273 (292) T ss_dssp CC T ss_pred CC T ss_conf 98 No 6 >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Probab=100.00 E-value=5.9e-42 Score=277.83 Aligned_cols=233 Identities=20% Similarity=0.326 Sum_probs=203.3 Q ss_pred HCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-------CCCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 1788788589589996289987248704699848898852167899762-------998555668988988643103221 Q gi|254781112|r 32 IYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-------NLKVEFFETAVSGLITGLDTNRYD 104 (274) Q Consensus 32 ~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-------g~~~~~~~~~~~~~~~~l~~g~~D 104 (274) ..-.+++++|+|+||+..+||||+|. |++|+++||++||+++|++.+ +++++|++++|.+++.+|++|++| T Consensus 8 ~~l~~i~~~g~l~Vg~~~~~~P~~~~--d~~G~~~G~~vDl~~~ia~~l~~~l~~~~~~v~~~~~~~~~~~~~L~~G~~D 85 (287) T 2vha_A 8 STLDKIAKNGVIVVGHRESSVPFSYY--DNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFD 85 (287) T ss_dssp SHHHHHHHHTEEEEEECSEETTTEEE--CSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHTTSCS T ss_pred CHHHHHHHCCEEEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC T ss_conf 10999970998999986898893689--9999888866999999999974773778706999987999999999869964 Q ss_pred CCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC------CCCCCEEECCH Q ss_conf 100-00367567542002333222222222111222211111233432023101012233201------34542133685 Q gi|254781112|r 105 VLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE------LKSHLVFSHNF 177 (274) Q Consensus 105 ~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~------~~~~~~~~~~~ 177 (274) +++ ++++|++|++.+.||.||+.....++++++. .+++++||+|++||++.|+.++.++.. .+.+++.+.+. T Consensus 86 i~~~~~~~t~~R~~~~~fs~p~~~~~~~l~~~k~~-~i~~~~dL~g~~v~v~~gs~~~~~l~~~~~~~~~~~~iv~~~~~ 164 (287) T 2vha_A 86 FECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG-DIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDH 164 (287) T ss_dssp EECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-SCCSGGGGTTCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSH T ss_pred EEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECCC-CCCCHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCHH T ss_conf 34113446645654324554300047257775489-87898780898122137866999999988873789634652217 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 57777554432100366558999999845876673262367768770799981899899999999999999798599999 Q gi|254781112|r 178 EQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIF 257 (274) Q Consensus 178 ~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~ 257 (274) .+++++|.+||+|+++.+.....+++.+...... +.+...+....+++++++|++++|++.||++|++|++||++++|+ T Consensus 165 ~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~av~k~~~~L~~~in~~l~~l~~~G~~~~I~ 243 (287) T 2vha_A 165 GDSFRTLESGRAVAFMMDDALLAGERAKAKKPDN-WDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWF 243 (287) T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGG-EEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHH T ss_pred HHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCC-EEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 8999999869940999614999999996578886-799378777631899994899999999999999999785999999 Q ss_pred HHHCCCCCCCC Q ss_conf 87678887756 Q gi|254781112|r 258 DRYFDKNIISS 268 (274) Q Consensus 258 ~kw~g~d~~~~ 268 (274) +||||+.++++ T Consensus 244 ~kwf~~~~pp~ 254 (287) T 2vha_A 244 DKWFKNPIPPK 254 (287) T ss_dssp HHHHHSCBTTT T ss_pred HHHCCCCCCCC T ss_conf 99768999977 No 7 >2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Probab=100.00 E-value=1.3e-41 Score=275.72 Aligned_cols=231 Identities=28% Similarity=0.407 Sum_probs=201.3 Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECC-CCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCC Q ss_conf 8878858958999628998724870469-9848898852167899762998555668988988643103221100-0036 Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDG-RGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAI 111 (274) Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~-~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~ 111 (274) -.+++++++|+||++++||||+|.+.++ .|+++||++|+++++++++|++++|+++||.+++..|++|++|+++ ++++ T Consensus 14 ~~~i~~~~~l~V~~~~~~~P~~~~~~~~~~g~~~G~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~ 93 (271) T 2iee_A 14 WEQIKDKGKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDV 93 (271) T ss_dssp HHHHHHHTEEEEEECSCBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHTSSSEECSSCBC T ss_pred HHHHHCCCEEEEEECCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCC T ss_conf 99984499799998899889678836899996788799999999998399648998999999999976997744024546 Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEECCCHHHHHHHCCC--CCCEEECCHHHHHHHHHHHH Q ss_conf 756754200233322222222211122-221111123343202310101223320134--54213368557777554432 Q gi|254781112|r 112 TPERQKKYDFSIPYIAHRVLLVVRSDQ-QDIRSFKDLTDKTVAQILGTDLSRFAKELK--SHLVFSHNFEQSLQLLLSKR 188 (274) Q Consensus 112 t~eR~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~gr 188 (274) +++|.+.+.||.||+.....++++++. ..+.+++||+|++||+..|+.+.+++++.. ..+..+.+..+++++|.+|| T Consensus 94 ~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~dl~g~~v~v~~g~~~~~~l~~~~~~~~i~~~~s~~~~l~~L~~gr 173 (271) T 2iee_A 94 TKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAAGAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGR 173 (271) T ss_dssp CHHHHTTEEECCCSEEEEEEEEECTTTGGGCSSGGGGTTCEEESCTTSHHHHHHHHTTCEEEECSSCCHHHHHHHHHHTS T ss_pred CHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCC T ss_conf 87887654205662215762367504777779878807945897168589999997089858998236088999997695 Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC-C Q ss_conf 1003665589999998458766732623677687707999818998999999999999997985999998767888-7 Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN-I 265 (274) Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d-~ 265 (274) +|+++.+.....+++.+.+.... .........+.+++++++|++++|++.||++|.+|++||++++|.+||||+. | T Consensus 174 vD~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~L~~~ln~~l~~i~~dG~~~~I~~kyf~~~d~ 250 (271) T 2iee_A 174 TDVILNDYYLQTLALAAFPDLNI-TIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADV 250 (271) T ss_dssp SCEEEEEHHHHHHHHHHCTTSSC-EECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTTCCT T ss_pred EEEEEECHHHHHHHHHHCCCCCE-EECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 34999249999999986899746-866676656612899994899999999999999999787799999874899755 No 8 >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Probab=100.00 E-value=3.3e-41 Score=273.16 Aligned_cols=220 Identities=29% Similarity=0.456 Sum_probs=197.2 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHH Q ss_conf 89589996289987248704699848898852167899762998555668988988643103221100-00367567542 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKK 118 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~ 118 (274) .++|+||++++||||+|.+ +|+++|+++|+++++++++|+++++++.+|++++..|++|++|+++ ++++|++|++. T Consensus 2 ~k~l~v~~~~~~pP~~~~~---~g~~~G~~~dl~~~ia~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~ 78 (226) T 1wdn_A 2 DKKLVVATDTAFVPFEFKQ---GDLYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKA 78 (226) T ss_dssp --CEEEEEESSBTTTBEEE---TTEEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEEEEEEECCHHHHTT T ss_pred CCEEEEEECCCCCCEEEEE---CCEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHCCE T ss_conf 9509999899978848811---9958887999999999996996699978999999998769986574421235413254 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 0023332222222221112222111112334320231010122332013--45421336855777755443210036655 Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) +.||.||+..+..++++++...+++++||+|++||+..|+.+..+++.. ..++..+.+..+++.++.+||+|+++.+. T Consensus 79 ~~fs~p~~~~~~~~~~~~~~~~~~~~~dl~g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vD~~i~~~ 158 (226) T 1wdn_A 79 IDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDT 158 (226) T ss_dssp SEECSCCEEEEEEEEEETTCCSCSSSTTTTTCEEEEETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEH T ss_pred EEECCCEEEEEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCCHHHHHCCCCCEEEECCHHHHHHHHHCCCEEEEEECC T ss_conf 88245569977799999999999997995899999987866420123430355236507789999887458468999161 Q ss_pred HHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 89999998458766732623677687707999818998999999999999997985999998767888 Q gi|254781112|r 197 IPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274) ..+.+++++.+... ..+...+....++++++++++++|++.||++|++|++||++++|++||||.| T Consensus 159 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~l~~~~n~~l~~l~~~G~~~~i~~kylg~d 224 (226) T 1wdn_A 159 PNILYFIKTAGNGQ--FKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTE 224 (226) T ss_dssp HHHHHHHHTTTTTT--EEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSSC T ss_pred HHHHHHHHHCCCCC--EEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC T ss_conf 88888876415674--0551556777618999979999999999999999997969999999875999 No 9 >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Probab=100.00 E-value=3.8e-41 Score=272.84 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=193.3 Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHH Q ss_conf 88589589996289987248704699848898852167899762998555668988988643103221100-00367567 Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPER 115 (274) Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR 115 (274) ..++++|+||++++||||+|.+ +|+++||++|+++++++++|++++|+.++|.+++..|++|++|+++ ++++|++| T Consensus 38 ~~~~~~l~Vg~~~~~~P~~~~~---~G~~~G~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~R 114 (272) T 2pvu_A 38 GATKKKVVVGTDAAFAPFEYMQ---KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDER 114 (272) T ss_dssp CCCCCCEEEEECCCBTTTBEEE---TTEEESHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHTSSSEECSSCBCCHHH T ss_pred CCCCCEEEEEECCCCCCCEEEE---CCEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHH T ss_conf 5558989999899878935856---9977881999999999980996599977989999999759966895145578777 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC---CCCCEEECCHHHHHHHHHHHHHHCC Q ss_conf 5420023332222222221112222111112334320231010122332013---4542133685577775544321003 Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL---KSHLVFSHNFEQSLQLLLSKRTDAT 192 (274) Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~grvD~~ 192 (274) ++.+.||.||+..+..+++|+++ .+++.++|.|+++++..|+.++.++++. ..++..+.+..+++++|.+||+|++ T Consensus 115 ~~~~~~s~p~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~ 193 (272) T 2pvu_A 115 KQSYDFSDPYFEATQVILVKQGS-PVKNALDLKGKTIGVQNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAV 193 (272) T ss_dssp HTTEEECSCCEEECEEEEEETTC-CCCSGGGGTTSCEEEETTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEE T ss_pred HCCCCCCCCCCCCCEEEEEECCC-CCCCHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEE T ss_conf 41055674630563789974487-67885886798577625763999999873448734304208999999985981165 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC Q ss_conf 6655899999984587667326236776877079998189989999999999999979859999987678887 Q gi|254781112|r 193 MIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274) +.+...+.+++++.+.................+++++++ +++|++.||++|.+|++||++++|++||||+|- T Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~ln~al~~~~~dG~~~~I~~kyfG~dp 265 (272) T 2pvu_A 194 ITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEP 265 (272) T ss_dssp EEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEET-TCTTHHHHHHHHHHHHHTTHHHHHHHHHHSSCC T ss_pred CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC T ss_conf 266598999998589987699516766676159999789-989999999999999969699999998679999 No 10 >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis} Probab=100.00 E-value=8e-41 Score=270.81 Aligned_cols=225 Identities=21% Similarity=0.259 Sum_probs=197.2 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC-HHCCCCHHHHH Q ss_conf 58958999628998724870469984889885216789976299855566898898864310322110-00036756754 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVL-VNVAITPERQK 117 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~-~~~~~t~eR~~ 117 (274) .+.+|+||++++||||+|. |++|++.||++|+++++++++|++++|+.++|++++..+++|++|++ .+++++++|++ T Consensus 9 ~~~~l~Vg~~~~~pP~~~~--~~~G~~~G~~vDi~~~ia~~lg~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~~~~r~~ 86 (242) T 3del_B 9 NSEKFIVGTNATYPPFEFV--DKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLK 86 (242) T ss_dssp --CEEEEEECSCBTTTBEE--CTTSCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSSSEECSSBBCCHHHHT T ss_pred CCCEEEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHH T ss_conf 8996999989988991589--99998887299999999999699769997898999999975986610035769988983 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC-CCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 20023332222222221112222111112334320231010122332013-45421336855777755443210036655 Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL-KSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) .+.|+.||+.....++.+.+...+++++||+|++||+..|+.++.++++. +.+++.+++..+++++|.+||+|+++.+. T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Vgv~~gs~~~~~l~~~~~~~i~~~~~~~~~~~~L~~griD~~i~~~ 166 (242) T 3del_B 87 EILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVLEP 166 (242) T ss_dssp TEEEEEEEEEEESEEEEEEESCCSCCCCGGGSSCEEEETTSHHHHHHHHSTTCCEEEESSHHHHHHHHHTTSSSEEEECH T ss_pred HCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCEEEEEECH T ss_conf 13678643235532688631543321344202200242574358999856587079861453125688639743999669 Q ss_pred HHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC Q ss_conf 899999984587667326236776877079998189989999999999999979859999987678887 Q gi|254781112|r 197 IPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274) Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274) ..+.+++++.+................++++++++++++|++.||++|++|++||++++|++||+-.|+ T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~k~~~~l~~~ln~al~~l~~~G~~~~I~~ky~l~~~ 235 (242) T 3del_B 167 SIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNL 235 (242) T ss_dssp HHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGC T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHH T ss_conf 999999985887634542268765432689999489999999999999999978789999999799546 No 11 >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Probab=100.00 E-value=9.7e-41 Score=270.29 Aligned_cols=227 Identities=17% Similarity=0.272 Sum_probs=202.4 Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHCCCCHH Q ss_conf 788589589996289987248704699848898852167899762998555668-9889886431032211000036756 Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNVAITPE 114 (274) Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~t~e 114 (274) .++++++||||++.+||||+|. |++|++.|+++|+++++++++|++++++++ +|.+++..+++|++|+++++++|++ T Consensus 27 wl~~~~~l~v~~~~~~~P~~~~--~~~g~~~G~~~dll~~i~~~lg~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~t~~ 104 (267) T 3mpk_A 27 WMADHPVVKVAVLNLFAPFTLF--RTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSA 104 (267) T ss_dssp HHHHCSEEEEEEETEETTTEEC--CTTCCCBSHHHHHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEEEEEECCGG T ss_pred HHHHCCEEEEEECCCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCCHH T ss_conf 9982993999984898995699--89998877899999999998499579998289999999863696659964789988 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHHHHHHHCC Q ss_conf 7542002333222222222111222211111233432023101012233201--34542133685577775544321003 Q gi|254781112|r 115 RQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLLSKRTDAT 192 (274) Q Consensus 115 R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~~ 192 (274) |.+.+.||.||+....+++++++...+.+++||+|++||++.|+.+..++.+ .+.+++.+++..+++++|.+||+|++ T Consensus 105 r~~~~~~s~p~~~~~~~~v~~~~~~~~~~~~~l~g~~i~~~~g~~~~~~l~~~~~~~~i~~~~~~~~~l~~L~~GrvDa~ 184 (267) T 3mpk_A 105 RESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAV 184 (267) T ss_dssp GTTTEEECSCSEEECEEEEEESSTTSCSSGGGCTTCEEEEETTCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEE T ss_pred HHHCCCCCCCEECCCEEEEEECCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEE T ss_conf 98407767621304404542014434579889658730554154056999972887417998068987789887986768 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC Q ss_conf 66558999999845876673262367768770799981899899999999999999798599999876788877 Q gi|254781112|r 193 MIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274) +.+...+.+++++.+.....+ .......+.+++++++|++++|++.||++|.+|+ +|++++|++||||+|.. T Consensus 185 i~~~~~~~~~l~~~~~~~~~v-~~~~~~~~~~~~~~~~k~~~~L~~~in~~L~~l~-~~~~~~I~~kw~g~d~~ 256 (267) T 3mpk_A 185 VQTQISASYYVNRYFAGKLRI-ASALDLPPAEIALATTRGQTELMSILNKALYSIS-NDELASIISRWRGSDGD 256 (267) T ss_dssp EEEHHHHHHHHHHHCTTTEEE-EEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSC-HHHHHHHHHTTC----- T ss_pred ECCHHHHHHHHHHCCCCCEEE-EECCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC-HHHHHHHHHHHCCCCCC T ss_conf 427999999998389997699-5046777526999994899999999999999708-55999999986799989 No 12 >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Probab=100.00 E-value=2.3e-40 Score=267.93 Aligned_cols=222 Identities=26% Similarity=0.457 Sum_probs=192.3 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHH Q ss_conf 89589996289987248704699848898852167899762998555668988988643103221100-00367567542 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKK 118 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~ 118 (274) +..|+||++++||||.|.+ +.+|++.||++|+++++++++|++++|++++|.+++..|++|++|+++ +++++++|.+. T Consensus 2 s~~l~vg~~~~~pP~~~~~-~~~g~~~G~~~dl~~~ia~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~ 80 (237) T 3kzg_A 2 SLNLTIGTSKFNPPFEVWS-GNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKH 80 (237) T ss_dssp CCEEEEEEESEETTTEECC-CTTSCCBSHHHHHHHHHHHHTTCEEEEEEECGGGHHHHHHTTSSSEECSSCBCCTTGGGT T ss_pred CCCEEEEECCCCCCCEEEE-CCCCCEEEEHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHHHC T ss_conf 8758999899989836898-999928873999999999996997599977999999999869987772136799789730 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 002333222222222111222211111233432023101012233201--345421336855777755443210036655 Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) +.||.||+.....++++++. .+++++||+|++||+..|+.+..++.+ ...++..+.+.++++++|.+||+|+++.+. T Consensus 81 ~~fs~py~~~~~~~~~~~~~-~~~~~~~l~g~~i~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~i~~~ 159 (237) T 3kzg_A 81 FIFSLPYMESNSQYITTVDS-KISTFDDLHGKKIGVRKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDY 159 (237) T ss_dssp CEECCCSBCCEEEEEEETTC-SCCSGGGGTTCEEEEETTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEH T ss_pred CCCCCCEEECCCEEEECCCC-CCCCHHHHCCCCCEEECCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCEEEEEECH T ss_conf 20467434034012331555-56898897698214325868999998734564011258889988898659657999659 Q ss_pred HHHHHHHHHCCCCCCC----E-EECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC Q ss_conf 8999999845876673----2-62367768770799981899899999999999999798599999876788 Q gi|254781112|r 197 IPFFNFLERRPHDGNL----F-KIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274) Q Consensus 197 ~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274) ..+.+++++.+..... . .+........++++++++++++|++.||++|++|++||++++|.+||||= T Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~in~~l~~l~~~G~~~~i~~kyf~g 231 (237) T 3kzg_A 160 EAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEG 231 (237) T ss_dssp HHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC-- T ss_pred HHHHHHHHHCCCCCEECCCCEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 999999985896410215320113665556763699988999999999999999999787899999746899 No 13 >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Probab=100.00 E-value=1.7e-39 Score=262.58 Aligned_cols=225 Identities=25% Similarity=0.411 Sum_probs=196.4 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHH Q ss_conf 89589996289987248704699848898852167899762998555668988988643103221100-00367567542 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKK 118 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~ 118 (274) .++||||++.+||||+|. |++|++.|+++|+++++++++|++++|+..+|.++...+.+|++|+++ +.+++++|.+. T Consensus 3 p~tirv~~~~~~pP~~~~--d~~g~~~G~~~Dl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~eR~~~ 80 (239) T 1lst_A 3 PQTVRIGTDTTYAPFSSK--DAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE 80 (239) T ss_dssp CSEEEEEECSCBTTTBEE--CTTCCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHHH T ss_pred CCEEEEEECCCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHHH T ss_conf 986999989997892589--999988870999999999995996899980307678998668767899678799789852 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC----CCCCCEEECCHHHHHHHHHHHHHHCCCC Q ss_conf 002333222222222111222211111233432023101012233201----3454213368557777554432100366 Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE----LKSHLVFSHNFEQSLQLLLSKRTDATMI 194 (274) Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~grvD~~~~ 194 (274) +.||.||......++++++...+++++||+|++||++.|+.++..+.. .+.+++.+.+..+++.++.+||+|+++. T Consensus 81 ~~~s~p~~~~~~~~~~~~~~~~~~~~~dL~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~vD~~i~ 160 (239) T 1lst_A 81 IAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQ 160 (239) T ss_dssp CEECSCSBCCCEEEEEETTCCCCSSHHHHTTCEEEEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEE T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCEEEEEE T ss_conf 01357457414311001588767997896899899985752776666541331023563089899999998497139994 Q ss_pred CHHHHHHHHHHCCCCCCCEEE----CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC Q ss_conf 558999999845876673262----367768770799981899899999999999999798599999876788877 Q gi|254781112|r 195 PDIPFFNFLERRPHDGNLFKI----ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274) +...+.+++.+.+........ ...+....+++++++|++++|++.||++|.+|++||++++|++||||.|+. T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~~~~~G~~~~I~~kyf~~~~~ 236 (239) T 1lst_A 161 DEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVY 236 (239) T ss_dssp EHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSSCTT T ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 3899999999675666523416644454235640799990899999999999999999795999999987799999 No 14 >3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Probab=100.00 E-value=1.2e-38 Score=257.37 Aligned_cols=221 Identities=23% Similarity=0.372 Sum_probs=190.6 Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHH Q ss_conf 9589996289987248704699848898852167899762998555668988988643103221100-003675675420 Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKY 119 (274) Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~ 119 (274) .+||||++++||||+|. |++|++.|+++|+++++++++|++++|++++|.+++..|++|++|+++ +.++|++|.+.+ T Consensus 5 ~tlrVg~~~~~pP~~~~--d~~g~~~G~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~D~i~~~~~~t~er~~~~ 82 (232) T 3i6v_A 5 DTVRMGTEGAYPPYNFI--NDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVI 82 (232) T ss_dssp -CEEEEECSEETTTEEE--CTTSCEESHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTS T ss_pred CEEEEEECCCCCCEEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHHHCC T ss_conf 95999987997993699--9999787759999999999849967999767488999986799779997786897898314 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 02333222222222111222211111233432023101012233201345421336855777755443210036655899 Q gi|254781112|r 120 DFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPF 199 (274) Q Consensus 120 ~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~ 199 (274) .||.||+.....+++++++ .+||+|. +++..++....++...+.+++.+++..+++++|.+||+|+++.+.... T Consensus 83 ~~s~p~~~~~~~~~~~~~~-----~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~grvD~~i~~~~~~ 156 (232) T 3i6v_A 83 DFTQNYIPPTASSYVATSD-----GADLSGI-VAAQTATIQAGYIAESGATLVEFATPEETIAAVRNGEADAVFADRDYL 156 (232) T ss_dssp EEEEEEECCCEEEEEESST-----TCCTTSE-EEEETTSHHHHHHHHSSSEEEEESSHHHHHHHHHTTSSSEEEEEHHHH T ss_pred CEECCEECCCCEEEEECCC-----HHHHCCC-CCEEECCHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECHHHH T ss_conf 1403210266158998388-----6880786-020425317777635684589969989999999769950999728999 Q ss_pred HHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 999984587667326236776877079998189989999999999999979859999987678887756898 Q gi|254781112|r 200 FNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNIISSVPG 271 (274) Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~~~~~~ 271 (274) .+++++.+.... .+........++++++++++++|++.||++|.+|++||++++|++||||+|+....-| T Consensus 157 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~i~~kylg~d~~~~~~~ 226 (232) T 3i6v_A 157 VPIVAESGGELM--FVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232) T ss_dssp HHHHHHTTTSSE--EEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCCC-- T ss_pred HHHHHHCCCCEE--EECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC T ss_conf 999986699719--9326777664179998089999999999999999968299999998779985646877 No 15 >1ii5_A Hypothetical protein SLR1257; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Probab=100.00 E-value=1.7e-38 Score=256.49 Aligned_cols=223 Identities=22% Similarity=0.386 Sum_probs=195.2 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCCCCH-HCCCCHHHHH Q ss_conf 895899962899872487046998488988521678997629985556-68988988643103221100-0036756754 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFF-ETAVSGLITGLDTNRYDVLV-NVAITPERQK 117 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~-~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~ 117 (274) .++||||+. ++|||.|.+...+|+++|+++|+++++++++|++++++ ..+|++++.++++|++|+++ ++++|++|+. T Consensus 3 a~~LrVg~~-~~pPf~~~~~~~~g~~~G~~vdl~~~ia~~~g~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~eR~~ 81 (233) T 1ii5_A 3 AMALKVGVV-GNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAA 81 (233) T ss_dssp SCCEEEEEC-CCTTTCEEC-----CEESHHHHHHHHHHHHHTCCEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHT T ss_pred CCCEEEEEE-CCCCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHHHHH T ss_conf 787799994-7999766534999928878999999999983997499956999999999986998767411568867764 Q ss_pred --HHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCC Q ss_conf --2002333222222222111222-2111112334320231010122332013454213368557777554432100366 Q gi|254781112|r 118 --KYDFSIPYIAHRVLLVVRSDQQ-DIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMI 194 (274) Q Consensus 118 --~~~fs~p~~~~~~~~~~~~~~~-~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~ 194 (274) .+.||.||+.....++++++.. .+.+++||+|+++++..|+.+..+++..+.+++.+++.++++++|.+||+|+++. T Consensus 82 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dl~g~~i~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~l~~grvD~~v~ 161 (233) T 1ii5_A 82 IEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWANFYQADVRETNNLTAAITLLQKKQVEAVMF 161 (233) T ss_dssp STTEEECCCCEEEEEEEEEEGGGTTTCSSGGGGTTCEEEEETTSHHHHHHHHTTCEEEEESSHHHHHHHHHTTSCSEEEE T ss_pred HHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEEEEC T ss_conf 43023467742257336885112224566888754230556886899998553664213574799999986591799978 Q ss_pred CHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC Q ss_conf 558999999845876673262367768770799981899899999999999999798599999876788877 Q gi|254781112|r 195 PDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274) +...+.+++.+.+... +.+...+....+++++++++ ++|++.||++|.+|+++|++++|++||||.|+- T Consensus 162 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~in~~l~~~~~~g~~~~i~~kylg~~~~ 230 (233) T 1ii5_A 162 DRPALIYYTRQNPNLN--LEVTEIRVSLEPYGFVLKEN-SPLQKTINVEMLNLLYSRVIAEFTERWLGPGIE 230 (233) T ss_dssp EHHHHHHHHHHCGGGC--EEECSCCSEEEEEEEEEETT-CTTHHHHHHHHHHHHHTTHHHHHHHHHHC---- T ss_pred CHHHHHHHHHHCCCCC--EEECCCCCCCCEEEEEECCC-HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 6999999999689997--64245678773499997899-799999999999999693999999987799976 No 16 >2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Probab=100.00 E-value=5.1e-39 Score=259.66 Aligned_cols=234 Identities=18% Similarity=0.281 Sum_probs=194.3 Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCCCCH-HCCC Q ss_conf 887885895899962899872487046998488988521678997629985556-68988988643103221100-0036 Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFF-ETAVSGLITGLDTNRYDVLV-NVAI 111 (274) Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~-~~~~~~~~~~l~~g~~D~~~-~~~~ 111 (274) -..++++++||||+ .++|||+|. |+.|+++||++|+++++++++|++++++ ..+|.+++..|++|++|+++ ++++ T Consensus 6 l~~i~~~g~lrV~~-~~~pP~~~~--~~~G~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~ 82 (257) T 2q88_A 6 LEELKEQGFARIAI-ANEPPFTAV--GADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFM 82 (257) T ss_dssp HHHHHHHTEEEEEE-CCCTTTCEE--CTTCCEESHHHHHHHHHHHHTTCCEEEEEECCGGGHHHHHHTTSCSEECSCCBC T ss_pred HHHHHCCCEEEEEE-CCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEEC T ss_conf 99998299699998-689994479--999988878999999999993997799846999999999975998847764341 Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCC-C---CCCCCCCCCCCEEEECCCHHHHHHHCC---CCCCEEECCHHHHHHHH Q ss_conf 7567542002333222222222111222-2---111112334320231010122332013---45421336855777755 Q gi|254781112|r 112 TPERQKKYDFSIPYIAHRVLLVVRSDQQ-D---IRSFKDLTDKTVAQILGTDLSRFAKEL---KSHLVFSHNFEQSLQLL 184 (274) Q Consensus 112 t~eR~~~~~fs~p~~~~~~~~~~~~~~~-~---~~~~~dL~g~~V~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l 184 (274) |++|.+.+.||.||+.....++++++++ . +.++++++|++||+..|+.+..++.+. ..+++.+.+.++++++| T Consensus 83 t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 162 (257) T 2q88_A 83 KPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKML 162 (257) T ss_dssp CHHHHTTSEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHH T ss_pred CHHHCCHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHH T ss_conf 54324310058661126731467536411333133454147856998358569999998189866223200167888998 Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHH-CCC Q ss_conf 4432100366558999999845876673262367768770799981899899999999999999798599999876-788 Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRY-FDK 263 (274) Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw-~g~ 263 (274) .+||+|+++.+...+.+++.+.+..................+++++|++++|++.||++|.+|++||++++|++|| |+. T Consensus 163 ~~GrvD~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~L~~~in~~l~~~~~~G~~~~i~~k~g~~~ 242 (257) T 2q88_A 163 QDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSA 242 (257) T ss_dssp HHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGTCCH T ss_pred HCCCEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC T ss_conf 76964799965999999998479998699615667763116899889999999999999999996949999999868798 Q ss_pred CCCCCCC Q ss_conf 8775689 Q gi|254781112|r 264 NIISSVP 270 (274) Q Consensus 264 d~~~~~~ 270 (274) +...++. T Consensus 243 ~~~~~~~ 249 (257) T 2q88_A 243 KAAMSTT 249 (257) T ss_dssp HHHHTCC T ss_pred CCCCCHH T ss_conf 6577240 No 17 >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Probab=100.00 E-value=3.6e-39 Score=260.59 Aligned_cols=217 Identities=17% Similarity=0.308 Sum_probs=188.4 Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC---CCCCCCCCCCHHHHHHHHHCCCCCCCH-HC Q ss_conf 88788589589996289987248704699848898852167899762---998555668988988643103221100-00 Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL---NLKVEFFETAVSGLITGLDTNRYDVLV-NV 109 (274) Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l---g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~ 109 (274) ...++++++|+||++.+||||+|.+ +.+|++.|+++|+++++++++ ++++++++.+|.+.+..+.+|++|+++ +. T Consensus 31 l~~i~~~~~l~V~~~~~~pP~~~~d-~~~g~~~G~~~di~~~ia~~~~~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~ 109 (259) T 2v25_A 31 LESIKSKGQLIVGVKNDVPHYALLD-QATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSVDAVIATF 109 (259) T ss_dssp HHHHHHHTCEEEEECSEETTTEEEE-TTTTEEESHHHHHHHHHHHHHHSCTTSEEEEECCTTTHHHHHHTTSCSEECSSC T ss_pred HHHHHCCCEEEEEECCCCCCCEEEE-CCCCEEEEEEEHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCC T ss_conf 9999609989999828978832466-789848889864765688872788757999983377589999769966003336 Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC------CCCCEEECCHHHHHHH Q ss_conf 3675675420023332222222221112222111112334320231010122332013------4542133685577775 Q gi|254781112|r 110 AITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL------KSHLVFSHNFEQSLQL 183 (274) Q Consensus 110 ~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~------~~~~~~~~~~~~~~~~ 183 (274) +.|++|++.+.||.||+..+..+++++++ .+++++||+|++||+..|+..+..+.+. ..+++.+++.++++++ T Consensus 110 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~i~s~~dL~g~~I~v~~gs~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~ 188 (259) T 2v25_A 110 TITPERKRIYNFSEPYYQDAIGLLVLKEK-KYKSLADMKGANIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAA 188 (259) T ss_dssp BCCHHHHTTEEECSCSEEEEEEEEEEGGG-CCCSGGGCTTCEEEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHH T ss_pred CCCHHHHHCEEECEEEECCCCCEEEECCC-CCCCHHHHCCCCCCEECCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHH T ss_conf 68978810114220344045430220357-97997892698500234770778899999870884444214207888765 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 54432100366558999999845876673262367768770799981899899999999999999798599999876 Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274) Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274) |.+||+|+++.+...+.++..+. ..+...+..+.+++++++|++++|++.+|++|.+++ |++++|.+|| T Consensus 189 l~~g~vDa~i~d~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~~~--g~~~~I~~kw 257 (259) T 2v25_A 189 LDAKRVDAFSVDKSILLGYVDDK------SEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHK--NEIDALAKKW 257 (259) T ss_dssp HHTTSSSEEEEEHHHHTTTCCTT------EEECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTH--HHHHHHHHHT T ss_pred HHCCEEEEEECCHHHHHHHHHHC------CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH--HHHHHHHHHC T ss_conf 42783789973599999999739------743578777326999995899999999999999824--7999999853 No 18 >3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes} Probab=100.00 E-value=1.9e-37 Score=250.01 Aligned_cols=223 Identities=26% Similarity=0.479 Sum_probs=191.8 Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH Q ss_conf 8589589996289987248704699848898852167899762998555668988988643103221100-003675675 Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ 116 (274) Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~ 116 (274) +.+|+||||++.+||||+|. |++|+++||++|+++++++++|++++|++++|.+++..+..|++|+++ +++.+++|+ T Consensus 2 ~~rg~lrvgv~~~~pP~~~~--d~~g~~~G~~~Dl~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~ 79 (245) T 3k4u_A 2 SLRGELRVGLEPGYLPFEMK--DKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERN 79 (245) T ss_dssp -CCSEEEEEECTTSTTTCEE--ETTTEEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHH T ss_pred CCCCEEEEEECCCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHH T ss_conf 98878999982898893689--9999888729999999999949966997337088899986699778986785687777 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC--CEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHHHHHHHC Q ss_conf 42002333222222222111222-21111123343--2023101012233201--3454213368557777554432100 Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQQ-DIRSFKDLTDK--TVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLLSKRTDA 191 (274) Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~~-~~~~~~dL~g~--~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~ 191 (274) +.+.||.|++.....++++++.. .+.+..++.++ .+++..|+..+.++++ .+.+++.+.+.++++++|.+||+|+ T Consensus 80 ~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~L~~GrvD~ 159 (245) T 3k4u_A 80 LRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADM 159 (245) T ss_dssp TTSEECSCSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEE T ss_pred HHCCCCCCEECCCCCCHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCE T ss_conf 53346786120441100014654446787785145542134777237899997377862899842178999997799659 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 3665589999998458766732623677687707999818998999999999999997985999998767888 Q gi|254781112|r 192 TMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274) ++.+...+.+++.+.+.. .......+....+++++++|++++|++.||++|.+|++||++++|++|||+++ T Consensus 160 ~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~ky~~~~ 230 (245) T 3k4u_A 160 FIFDLPFNVAFMAQKGQG--YLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDT 230 (245) T ss_dssp EEEEHHHHHHHHHHTTTT--TEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCC T ss_pred EEECCHHHHHHHHHCCCC--CCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC T ss_conf 997327777999864876--64212214777618999969999999999999999996839999999987993 No 19 >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Probab=100.00 E-value=9.6e-37 Score=245.58 Aligned_cols=227 Identities=20% Similarity=0.334 Sum_probs=188.0 Q ss_pred HCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHH-CC Q ss_conf 17887885895899962899872487046998488988521678997629985556689889886431032211000-03 Q gi|254781112|r 32 IYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVN-VA 110 (274) Q Consensus 32 ~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~-~~ 110 (274) ..-.+++++++||||++.+||||+|. |++|+++|+++|+++++++++|+++++++++|.+++..+.+|++|++++ .. T Consensus 6 ~~l~~I~~~g~l~V~~~~~~pP~~~~--~~~g~~~G~~vdl~~~i~~~~g~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~ 83 (239) T 3kbr_A 6 SRLDRILESGVLRVATTGDYKPFSYR--TEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGIS 83 (239) T ss_dssp CHHHHHHHHTEEEEEECSEETTTEEE--CTTSCEESHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHTTCCSEECSSCB T ss_pred HHHHHHHCCCEEEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC T ss_conf 15999863998999987898991489--9999887707999999988649713788536688899998599652233366 Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCC--CCCCEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHH Q ss_conf 6756754200233322222222211-122221111123--3432023101012233201--3454213368557777554 Q gi|254781112|r 111 ITPERQKKYDFSIPYIAHRVLLVVR-SDQQDIRSFKDL--TDKTVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLL 185 (274) Q Consensus 111 ~t~eR~~~~~fs~p~~~~~~~~~~~-~~~~~~~~~~dL--~g~~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~ 185 (274) +|++|.+.+.||.|++.....++++ .+...+.+.+++ .|++|++..|+..+.+++. .+.+++.+++.++++++|. T Consensus 84 ~t~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~L~ 163 (239) T 3kbr_A 84 INLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQQIV 163 (239) T ss_dssp CCHHHHTTCEECSCSEEECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHHHHHHHHHCSSSEEEECCCTTTHHHHHH T ss_pred CCHHHHHHCCCCCCEEECCCEEEEEECCCCCCCCHHHHHCCCCEEEECCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHH T ss_conf 89777432256743464252135520256765652444336870576567539999987087634533023276767863 Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC Q ss_conf 432100366558999999845876673262367768770799981899899999999999999798599999876788 Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274) Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274) +||+|+++.+...+.++.++.+... ......+....+++++++ ++++|++.||++|.+|++||++++|++|||+. T Consensus 164 ~grvD~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~ 238 (239) T 3kbr_A 164 DGKADLMMTDAIEARLQSRLHPELC--AVHPQQPFDFAEKAYLLP-RDEAFKRYVDQWLHIAEQSGLLRQRMEHWLEY 238 (239) T ss_dssp TTSCSEEEEEHHHHHHHHHHCTTEE--ECCCC-CCCCEEECCEEC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHC-- T ss_pred CCCCEEEEECHHHHHHHHHHCCCCE--EEEECCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 6983199954899999999789963--896215777530899976-99999999999999999795999999875588 No 20 >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102} Probab=100.00 E-value=3.6e-36 Score=242.03 Aligned_cols=218 Identities=27% Similarity=0.527 Sum_probs=187.6 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH-HCCCCHHHHH Q ss_conf 8958999628998724870469984889885216789976299855566-8988988643103221100-0036756754 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV-NVAITPERQK 117 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~ 117 (274) +.+|+||++ +||||+|. ++|++.||++|+++++++++|++++|++ .+|.+++++|++|++|+++ ++++|++|++ T Consensus 2 ~~~l~v~~~-~~PPf~~~---~~g~~~G~~~di~~~i~~~lg~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~ 77 (228) T 2pyy_A 2 QQPLLVATR-VIPPFVLS---NKGELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQ 77 (228) T ss_dssp --CEEEEEC-CBTTTBBC---C---CBSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHHHH T ss_pred CCCEEEEEC-CCCCEEEC---CCCEEEEEHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHHHHH T ss_conf 964899967-71981874---49968885999999999996997399967999999999985997667102557988985 Q ss_pred HHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCC Q ss_conf 200233322222222211122---22111112334320231010122332013454213368557777554432100366 Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQ---QDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMI 194 (274) Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~---~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~ 194 (274) .+.||.|++.....++.+++. ..+.++++|+|++|++..|+.++.++++...+++.+++..+++++|.+||+|+++. T Consensus 78 ~~~~s~p~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~gr~d~~i~ 157 (228) T 2pyy_A 78 NFDFSLPIFASGLQIMVRNLESGTGDIRSIDDLPGKVVATTAGSTAATYLREHHISVLEVPKIEEAYKALQTKKADAVVF 157 (228) T ss_dssp HSEECSCSEEEEEEEEEEC-----CCCCSGGGCTTCEEEEETTSHHHHHHHHTTCEEEEESSHHHHHHHHHTTSSSEEEE T ss_pred HCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 34467872125613676314456534588788299889843896899999875202111324888887864594679996 Q ss_pred CHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 5589999998458766732623677687707999818998999999999999997985999998767888 Q gi|254781112|r 195 PDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274) +...+.+++++.+... ..+...+....++++++++ +++|++.+|++|.+|++||++++|++||||.. T Consensus 158 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~~~ln~~l~~l~~~g~~~~I~~kyf~~~ 224 (228) T 2pyy_A 158 DAPVLLFYAANEGKGK--VEIVGSILREESYGIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFDPK 224 (228) T ss_dssp EHHHHHHHHHTTTTTT--EEEEEEEEEEEEECCEECT-TCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC- T ss_pred CHHHHHHHHHHCCCCC--EEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC T ss_conf 3188899998468883--5883466766328999779-98999999999999997979999999748997 No 21 >1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Probab=100.00 E-value=5.3e-36 Score=241.00 Aligned_cols=221 Identities=15% Similarity=0.200 Sum_probs=184.6 Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-----------------CHHHHHHHHH Q ss_conf 88589589996289987248704699848898852167899762998555668-----------------9889886431 Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-----------------AVSGLITGLD 99 (274) Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-----------------~~~~~~~~l~ 99 (274) ...++.++++++.++||+.|.. .+|++.||++||+++|++++|++++|+++ +|++++.+|+ T Consensus 37 ~~~~~~~~~~~~~~~~p~~~~~--~~g~~~G~~vDl~~~ia~~lg~~~e~~~~~~~~~g~~~~~~~~~~~~w~~~~~~l~ 114 (292) T 1pb7_A 37 DPVKKVICTGPNDTSPGSPRHT--VPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELL 114 (292) T ss_dssp CBCCCEEEEEEC--------CE--EEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHH T ss_pred CCCCCEEEEECCCCCCCCCCCC--CCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 3457428951168888633127--99976998499999999983994799986676545433346556688889999986 Q ss_pred CCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC----CEEEECCCHHHHHHHCC----- Q ss_conf 03221100-0036756754200233322222222211122221111123--343----20231010122332013----- Q gi|254781112|r 100 TNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDL--TDK----TVAQILGTDLSRFAKEL----- 167 (274) Q Consensus 100 ~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL--~g~----~V~~~~g~~~~~~l~~~----- 167 (274) +|++|+++ ++++|++|++.+.||.||+..+..+++++++. +...+++ +++ ++|+..++..+.++++. T Consensus 115 ~g~~Di~~~~~~~t~eR~~~~~Fs~Py~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 193 (292) T 1pb7_A 115 SGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR-ITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST 193 (292) T ss_dssp HTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC-CCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHH T ss_pred CCCEEEEEECCCCCHHHHHHCCCCCEECCCCEEEEEECCCC-CCCCCHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHH T ss_conf 79767998668799899942666510124776899986886-56453033068633269978664799999986466653 Q ss_pred ---CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHH Q ss_conf ---45421336855777755443210036655899999984587667326236776877079998189989999999999 Q gi|254781112|r 168 ---KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEIL 244 (274) Q Consensus 168 ---~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l 244 (274) ..++..+++..+++++|.+|++|+++.+.....++..+.+. +.+..++....+++++++|+++ |++.||.+| T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~k~~~-l~~~in~al 268 (292) T 1pb7_A 194 MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD----LVTTGELFFRSGFGIGMRKDSP-WKQNVSLSI 268 (292) T ss_dssp HHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT----EEECSSCSEEEEECCEEETTCS-SHHHHHHHH T ss_pred CCCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCC----EEEECCCCCCCEEEEEEECCHH-HHHHHHHHH T ss_conf 06774699828899999998779735996258999999986898----7993776666128999908759-999999999 Q ss_pred HHHHHCCHHHHHHHHHCCCCC Q ss_conf 999979859999987678887 Q gi|254781112|r 245 CAIHLDGTYKKIFDRYFDKNI 265 (274) Q Consensus 245 ~~l~~~G~~~~I~~kw~g~d~ 265 (274) .+|+++|++++|++||||..- T Consensus 269 ~~l~~~G~~~~l~~KW~~~~~ 289 (292) T 1pb7_A 269 LKSHENGFMEDLDKTWVRYQE 289 (292) T ss_dssp HHHHHSSHHHHHHHHHTSSSC T ss_pred HHHHHCCHHHHHHHHCCCCCC T ss_conf 999979899999986789998 No 22 >1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Probab=99.98 E-value=1.6e-32 Score=219.54 Aligned_cols=222 Identities=17% Similarity=0.272 Sum_probs=176.8 Q ss_pred CCCEEEEECCCCCCEEEEEEC-----CCCCEEEEEEEEHHHHHHHCCCCCCCCCCC-------------HHHHHHHHHCC Q ss_conf 895899962899872487046-----998488988521678997629985556689-------------88988643103 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQD-----GRGELTGFDIDLIKEVAHRLNLKVEFFETA-------------VSGLITGLDTN 101 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d-----~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~-------------~~~~~~~l~~g 101 (274) .++|+|++ ..+|||.|...| ++++++||++|+++++++++|++++|++++ |++++.++++| T Consensus 3 ~~t~~v~t-~~~pPf~~~~~~~~~~~~n~~~~G~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 81 (263) T 1mqi_A 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYG 81 (263) T ss_dssp CCCEEEEE-CCBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTT T ss_pred CEEEEEEE-CCCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCCCCHHHHHHHHHHC T ss_conf 73999997-86599666736866547889768868999999999859977999877876321313567778999865402 Q ss_pred CCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCEEEECCCHHHHHHHCCC--------- Q ss_conf 221100-003675675420023332222222221112222111112334---3202310101223320134--------- Q gi|254781112|r 102 RYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTD---KTVAQILGTDLSRFAKELK--------- 168 (274) Q Consensus 102 ~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g---~~V~~~~g~~~~~~l~~~~--------- 168 (274) ++|+++ ++++|++|++.+.||.||+.....+++++++. +.+++||.+ .++|++.+.....+..+.. T Consensus 82 ~~D~~~~~~t~t~eR~~~~~FS~py~~~~~~~~~~~~~~-~~~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 160 (263) T 1mqi_A 82 KADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP-IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWT 160 (263) T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS-CCSHHHHHTCSSSEEECBSSSHHHHHHHHCCSHHHHHHHH T ss_pred CCCEEEECCEECHHHHHHCCCCCCEECCCEEEEEECCCC-CCCHHHHHCCCCEEEEEECHHHHHHHHHHCCCCHHHHHHH T ss_conf 328898754606767520454576452652898631553-2347776067236998861779999998632204667899 Q ss_pred -----CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHH Q ss_conf -----542133685577775544321003665589999998458766732623677687707999818998999999999 Q gi|254781112|r 169 -----SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEI 243 (274) Q Consensus 169 -----~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~ 243 (274) ...+...+..+.+..+..++.|+++........+..+..... ......+....+++++++|+++ |++.||++ T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ia~~k~~~-L~~~in~a 237 (263) T 1mqi_A 161 YMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD--TMKVGGNLDSKGYGIATPKGSS-LGNAVNLA 237 (263) T ss_dssp HHHHCSSCCCBSSHHHHHHHHHHTTTSEEEEEEHHHHHHHTTSTTCC--EEEESCCSCCEEECCEEETTCT-THHHHHHH T ss_pred HHHCCCCCEEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCC--EEEECCCCCCCEEEEEEECCHH-HHHHHHHH T ss_conf 87515772574260899999985387546633489999999729987--6982456776138999908809-99999999 Q ss_pred HHHHHHCCHHHHHHHHHCCCCCC Q ss_conf 99999798599999876788877 Q gi|254781112|r 244 LCAIHLDGTYKKIFDRYFDKNII 266 (274) Q Consensus 244 l~~l~~~G~~~~I~~kw~g~d~~ 266 (274) |.+|+++|++++|++|||+.+.- T Consensus 238 L~~l~~~G~~~~i~~KwF~~~~~ 260 (263) T 1mqi_A 238 VLKLNEQGLLDKLKNKWWYDKGE 260 (263) T ss_dssp HHHHHHTTHHHHHHHHHHTTTCS T ss_pred HHHHHHCCHHHHHHHHHCCCCCC T ss_conf 99999788999999986899998 No 23 >2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* Probab=99.98 E-value=2e-32 Score=218.87 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=162.2 Q ss_pred CCEEEEEEEEHHHHHHHCCCCCCCCCCC-----------HHHHHHHHHCCCCCCC-HHCCCCHHHHHHHCCCCCCCCCCC Q ss_conf 8488988521678997629985556689-----------8898864310322110-000367567542002333222222 Q gi|254781112|r 63 GELTGFDIDLIKEVAHRLNLKVEFFETA-----------VSGLITGLDTNRYDVL-VNVAITPERQKKYDFSIPYIAHRV 130 (274) Q Consensus 63 g~~~G~~~dl~~~i~~~lg~~~~~~~~~-----------~~~~~~~l~~g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~ 130 (274) +.++||++||+++|++++|++++++.++ |++++.+|.+|++|++ .++++|++|++.++||.||+..+. T Consensus 55 ~~~~G~~iDl~~~ia~~lg~~~e~~~v~d~~~g~~~~~~w~~li~~l~~g~~Di~i~~~tit~eR~~~vdFs~Py~~~~~ 134 (284) T 2a5s_A 55 KCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGI 134 (284) T ss_dssp EEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECE T ss_pred CCEEEEHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCE T ss_conf 76389729999999998499779999358765765788889999766388589999588079999954827776246767 Q ss_pred CCCCCCCCCCCCCCCCCC---------CCCEEEECCCHHHHHHHCCC------CCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 222111222211111233---------43202310101223320134------542133685577775544321003665 Q gi|254781112|r 131 LLVVRSDQQDIRSFKDLT---------DKTVAQILGTDLSRFAKELK------SHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 131 ~~~~~~~~~~~~~~~dL~---------g~~V~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) .+++++++. +...+|++ +.++|++.|+..+.++++.- .....+.+.++++++|.+||+|+++.+ T Consensus 135 ~ilv~k~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~G~vDa~i~d 213 (284) T 2a5s_A 135 SVMVSRGTQ-VTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYD 213 (284) T ss_dssp EEEEETTCC-CCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEE T ss_pred EEEEECCCC-CCCHHHHHCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCEEECC T ss_conf 789867986-6663565326703315661899983754999999765543126798248999999999986998789645 Q ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC Q ss_conf 58999999845876673262367768770799981899899999999999999798599999876788 Q gi|254781112|r 196 DIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274) Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274) ...+.+++.+.+................+++++++|+++ |++.||++|.+|+++|++++|++||||- T Consensus 214 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~gia~~k~s~-l~~~in~ai~~l~~~G~~~~l~~KW~~~ 280 (284) T 2a5s_A 214 AAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLTG 280 (284) T ss_dssp HHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCT-THHHHHHHHHHHHHHTHHHHHHHHHTCC T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 999999998589985899358876576069999818839-9999999999999698999999735569 No 24 >1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Probab=99.97 E-value=1.1e-32 Score=220.59 Aligned_cols=223 Identities=18% Similarity=0.212 Sum_probs=174.9 Q ss_pred HHHCCCEEEEECCCCCCEEEEEECC-----CCCEEEEEEEEHHHHHHHCCCCCCCCC-------------CCHHHHHHHH Q ss_conf 8858958999628998724870469-----984889885216789976299855566-------------8988988643 Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDG-----RGELTGFDIDLIKEVAHRLNLKVEFFE-------------TAVSGLITGL 98 (274) Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~-----~g~~~G~~~dl~~~i~~~lg~~~~~~~-------------~~~~~~~~~l 98 (274) ..++++|+||+ ..+|||.|.+.++ +++++||++||+++|+++||++++|+. .+|++++..| T Consensus 9 ~~~~~t~~v~t-~~~pP~~~~~~~~~~~~~n~~~~Gf~vDl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (312) T 1yae_A 9 SLSNRSLIVTT-ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312) T ss_dssp TTCSCEEEEEE-CCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH T ss_pred CCCCCEEEEEE-CCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 23688899998-24599678816998767898668878999999999829977999905775453233678889987432 Q ss_pred HCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC------------------------CCCCCCCCCCCC-- Q ss_conf 103221100-00367567542002333222222222111222------------------------211111233432-- Q gi|254781112|r 99 DTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ------------------------DIRSFKDLTDKT-- 151 (274) Q Consensus 99 ~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~------------------------~~~~~~dL~g~~-- 151 (274) ++|++|+++ ++++|+||++.++||.||+..+..+++|+++. .+++++||.+++ T Consensus 88 ~~g~~Di~i~~~sit~eR~~~v~FS~PY~~~~~~lvv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~s~~dl~~~~~~ 167 (312) T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESPIDSADDLAKQTKI 167 (312) T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------CCSHHHHHTCSSS T ss_pred CCCEEEEEEECCEECHHHHHCCCCCCCEEEECEEEEEECCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCHHHHCCCEEE T ss_conf 24406599864585177741056477746304799999898777540666277356668732035665897995898369 Q ss_pred -EEEECCCHHHHHHHCCC-------------CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC Q ss_conf -02310101223320134-------------5421336855777755443210036655899999984587667326236 Q gi|254781112|r 152 -VAQILGTDLSRFAKELK-------------SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD 217 (274) Q Consensus 152 -V~~~~g~~~~~~l~~~~-------------~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (274) +++..|+....+..+.. .....+....+....+..++.|+++.+.....+...+.. .+.+.. T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~d~~~~~~~~~~~~----~~~~~~ 243 (312) T 1yae_A 168 EYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNC----NLTQIG 243 (312) T ss_dssp EEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSSEEEEEEHHHHHHHHTTCT----TEEEES T ss_pred EEEEEECEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCC----CEEEEC T ss_conf 9978812009998765101468899987630443121145688999971898599913899999984499----669804 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC Q ss_conf 776877079998189989999999999999979859999987678887 Q gi|254781112|r 218 RMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274) Q Consensus 218 ~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274) .+....+++++++|+++ |++.||++|.+|+++|++++|++|||+.+. T Consensus 244 ~~~~~~~~~~a~~K~s~-L~~~in~aL~~l~~~G~~~~l~~KWf~~~~ 290 (312) T 1yae_A 244 GLIDSKGYGVGTPMGSP-YRDKITIAILQLQEEGKLHMMKEKWWRGNG 290 (312) T ss_dssp SCSSCEEEEEEEETTCS-SHHHHHHHHHHHHHHTHHHHHHHHHHCCSC T ss_pred CCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHCCHHHHHHHHHCCCCC T ss_conf 44677328999928809-999999999999978989999998679999 No 25 >2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Probab=99.97 E-value=9.7e-32 Score=214.64 Aligned_cols=198 Identities=14% Similarity=0.239 Sum_probs=164.4 Q ss_pred CEEEEEEEEHHHHHHHCCCCCCCCC-----------CCHHHHHHHHHCCCCCCC-HHCCCCHHHHHHHCCCCCCCCCCCC Q ss_conf 4889885216789976299855566-----------898898864310322110-0003675675420023332222222 Q gi|254781112|r 64 ELTGFDIDLIKEVAHRLNLKVEFFE-----------TAVSGLITGLDTNRYDVL-VNVAITPERQKKYDFSIPYIAHRVL 131 (274) Q Consensus 64 ~~~G~~~dl~~~i~~~lg~~~~~~~-----------~~~~~~~~~l~~g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~~ 131 (274) .+.||++||+++|++++|++++++. .+|++++.+|++|++|++ .++++|+||++.++||.||+..+.. T Consensus 67 ~~~Gf~iDL~~~ia~~lg~~~e~~~v~d~~~~~~~~~~w~~~i~~l~~g~~Di~i~~~t~t~eR~~~v~Fs~Py~~~~~~ 146 (294) T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294) T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE T ss_pred CCEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHCEECCCEECCCCE T ss_conf 73856899999999981996799980688634536788899999997799659953013687688531741204126604 Q ss_pred CCCCCCCCCCCCCCC--CC----CCCEEEECCCHHHHHHHCCC------CCCEEECCHHHHHHHHHHH--HHHCCCCCHH Q ss_conf 221112222111112--33----43202310101223320134------5421336855777755443--2100366558 Q gi|254781112|r 132 LVVRSDQQDIRSFKD--LT----DKTVAQILGTDLSRFAKELK------SHLVFSHNFEQSLQLLLSK--RTDATMIPDI 197 (274) Q Consensus 132 ~~~~~~~~~~~~~~d--L~----g~~V~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~l~~g--rvD~~~~~~~ 197 (274) ++++++...+.++.| +. |.++|++.|+..+.++++.. .....+.+..+++++|..| |+|+++.+.. T Consensus 147 i~~~~~~~~~~~~~d~~l~~~~~g~~~Gtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~g~vDa~i~d~~ 226 (294) T 2rc8_A 147 ILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKA 226 (294) T ss_dssp EEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHH T ss_pred EEEECCCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCEEEEEEECHH T ss_conf 78745887544322124047733238996664289999886404333103553038779999876427815899982368 Q ss_pred HHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 9999998458766732623677687707999818998999999999999997985999998767888 Q gi|254781112|r 198 PFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274) .+.+++.+.+... +.....+....+++++++|+++ |++.||++|.+|+++|++++|++||||.+ T Consensus 227 ~~~~~~~~~~~~~--l~~v~~~~~~~~~gia~~k~s~-l~~~in~~l~~l~~~G~l~~L~~Kwfg~~ 290 (294) T 2rc8_A 227 LLDYEVSIDADCK--LLTVGKPFAIEGYGIGLPPNSP-LTSNISELISQYKSHGFMDVLHDKWYKVV 290 (294) T ss_dssp HHHHHHHTCSSSC--EEECSCCEEEEEECCEECTTCT-HHHHHHHHHHHHHHTTHHHHHHHHHCCC- T ss_pred HHHHHHHHCCCCC--EEEECCCCCCCEEEEEECCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHCCCC T ss_conf 8999998689986--8990687776218999809849-99999999999997989999998637999 No 26 >2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Probab=99.97 E-value=5.6e-31 Score=209.93 Aligned_cols=220 Identities=17% Similarity=0.259 Sum_probs=171.7 Q ss_pred CCEEEEECCCCCCEEEEEECC---CCCEEEEEEEEHHHHHHHCCCCCCCCCCC------------HHHHHHHHHCCCCCC Q ss_conf 958999628998724870469---98488988521678997629985556689------------889886431032211 Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDG---RGELTGFDIDLIKEVAHRLNLKVEFFETA------------VSGLITGLDTNRYDV 105 (274) Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~---~g~~~G~~~dl~~~i~~~lg~~~~~~~~~------------~~~~~~~l~~g~~D~ 105 (274) .+|||++. ++|||.|...+. .|+++||++||+++|++++|++++++.+| |++++..+..|++|+ T Consensus 3 ~~lrV~~~-~~pP~~~~~~~~~g~~~~~~G~~vdl~~~ia~~lg~~~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~D~ 81 (265) T 2v3u_A 3 VVLRVVTV-LEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADI 81 (265) T ss_dssp CEEEEEEC-CBTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTSCSE T ss_pred CEEEEEEC-CCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEE T ss_conf 68999985-55997798067789999788809999999999839967999846753143126888899877760685436 Q ss_pred CH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEECCCHHHHH------------------ Q ss_conf 00-00367567542002333222222222111222211111---233432023101012233------------------ Q gi|254781112|r 106 LV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFK---DLTDKTVAQILGTDLSRF------------------ 163 (274) Q Consensus 106 ~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~---dL~g~~V~~~~g~~~~~~------------------ 163 (274) ++ +.++|++|++.+.||.||+..+..++++++.. ....+ +..+..+++..+....+. T Consensus 82 ~~~~~~~t~~R~~~~~fs~py~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (265) T 2v3u_A 82 GISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS-IQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQM 160 (265) T ss_dssp ECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCC-CCSHHHHHTCSSSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHH T ss_pred EECCCCCCHHHHHHEEECCCEEECCEEEEECCCCC-CCCHHHHCCCEEEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHH T ss_conf 60446546777521520464365133444202355-32256746862566401300179999986387521120257899 Q ss_pred ---HHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHH Q ss_conf ---20134542133685577775544321003665589999998458766732623677687707999818998999999 Q gi|254781112|r 164 ---AKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSI 240 (274) Q Consensus 164 ---l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~i 240 (274) +...+..+..+.+..+++.++.+|+ |+.+.+.....+.+.+.... . +.....+....+++++++|++ +|++.| T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~i~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~K~s-~l~~~~ 236 (265) T 2v3u_A 161 WRMINRSNGSENNVLESQAGIQKVKYGN-YAFVWDAAVLEYVAINDPDC-S-FYTVGNTVADRGYGIALQHGS-PYRDVF 236 (265) T ss_dssp HHHHCC-----CCBSSHHHHHHHHHHSS-CEEEEEHHHHHHHHHHCTTC-C-EEEEC---CCEEECCEEETTC-TTHHHH T ss_pred HHHHHCCCCCCEECCCHHHHHHHHHCCC-EEEEECHHHHHHHHHHCCCC-C-EEECCCCCCCCEEEEEEECCH-HHHHHH T ss_conf 9987315540011168999999997699-09995379999999857897-5-898157777733899996981-999999 Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCC Q ss_conf 99999999798599999876788877 Q gi|254781112|r 241 NEILCAIHLDGTYKKIFDRYFDKNII 266 (274) Q Consensus 241 n~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274) |++|.+|+++|++++|++|||+++-- T Consensus 237 n~~l~~~~~~G~~~~i~~kwf~~~~~ 262 (265) T 2v3u_A 237 SQRILELQQSGDMDILKHKWWPKNGQ 262 (265) T ss_dssp HHHHHHHHHHTHHHHHHHHHCCCCCC T ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 99999999798999999987899994 No 27 >3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2i0c_A* 3c31_A* 1txf_A* 3c32_A* 3c33_A* 3c34_A* 3c35_A* 3c36_A* 2wky_A* ... Probab=99.96 E-value=2.7e-29 Score=199.48 Aligned_cols=221 Identities=17% Similarity=0.242 Sum_probs=164.0 Q ss_pred HCCCEEEEECCCCCCEEEEEECC-----CCCEEEEEEEEHHHHHHHCCCCCCCCCC-------------CHHHHHHHHHC Q ss_conf 58958999628998724870469-----9848898852167899762998555668-------------98898864310 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDG-----RGELTGFDIDLIKEVAHRLNLKVEFFET-------------AVSGLITGLDT 100 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~-----~g~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~~~~~~~l~~ 100 (274) .+++|+|++. .+|||.|.+.++ +|+++||++|+++++++++|++++++.+ +|++++..+++ T Consensus 2 ~~ktl~v~t~-~~~P~~~~~~~~~~~~~n~~~~G~dvDl~~~ia~~lg~~~~~~~v~~~~~~~~~~~~~~w~~~~~~l~~ 80 (259) T 3g3k_A 2 SNRSLIVTTI-LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELID 80 (259) T ss_dssp -CCCEEEEEC-CBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHT T ss_pred CCEEEEEEEC-CCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHC T ss_conf 9869999978-648987464688876789956885899999999980997589973555545334356788999876410 Q ss_pred CCCCCC-HHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEEECCCHHHHHHHCCCC-------- Q ss_conf 322110-000367567542002333222222222111222--211111233432023101012233201345-------- Q gi|254781112|r 101 NRYDVL-VNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ--DIRSFKDLTDKTVAQILGTDLSRFAKELKS-------- 169 (274) Q Consensus 101 g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~--~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~-------- 169 (274) |++|++ .++++|++|++.+.||.||+.....++++++++ ...++.++.+.++++..+.....+...... T Consensus 81 g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259) T 3g3k_A 81 HKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYDKMWA 160 (259) T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCCSHHHHHTCSSSEEEEETTSHHHHHHHHCCSHHHHHHHH T ss_pred CCCCEEEECCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH T ss_conf 23577863586799999535466871225604552168865533454045422456772422788888720157789987 Q ss_pred ------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHH Q ss_conf ------42133685577775544321003665589999998458766732623677687707999818998999999999 Q gi|254781112|r 170 ------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEI 243 (274) Q Consensus 170 ------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~ 243 (274) ......+..........+ .++++.+.........+... ......+....+++++++|+++ |++.||++ T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ia~~k~s~-L~~~in~a 234 (259) T 3g3k_A 161 FMSSRRQSVLVKSNEEGIQRVLTS-DYAFLMESTTIEFVTQRNCN----LTQIGGLIDSKGYGVGTPMGSP-YRDKITLA 234 (259) T ss_dssp HHHHTHHHHEESSHHHHHHHHHHS-SEEEEEEHHHHHHHHHHCTT----EEEESSCSSCEEECCEEETTCT-HHHHHHHH T ss_pred HHCCHHHHHHHCCHHHHHHHHHCC-CEEEEECHHHHHHHHHCCCC----EEECCCCCCCCEEEEEEECCHH-HHHHHHHH T ss_conf 520002456530078888775057-65998236889998741650----3422656677218999929849-99999999 Q ss_pred HHHHHHCCHHHHHHHHHCCCCCC Q ss_conf 99999798599999876788877 Q gi|254781112|r 244 LCAIHLDGTYKKIFDRYFDKNII 266 (274) Q Consensus 244 l~~l~~~G~~~~I~~kw~g~d~~ 266 (274) |++|++||++++|++|||+-+-+ T Consensus 235 l~~m~~~G~~~~l~~Kwf~~~~~ 257 (259) T 3g3k_A 235 ILKLQEQGKLHMMKEKWWRGNGC 257 (259) T ss_dssp HHHHHHTC-CHHHHHHHHCC--C T ss_pred HHHHHHCCHHHHHHHHHCCCCCC T ss_conf 99999788999999987779999 No 28 >3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Probab=99.66 E-value=4.8e-16 Score=117.58 Aligned_cols=221 Identities=16% Similarity=0.257 Sum_probs=146.3 Q ss_pred CCCEEEEECCCCCCEEEEEECC-----CCCEEEEEEEEHHHHHHHCCCCCCCCCC-------------CHHHHHHHHHCC Q ss_conf 8958999628998724870469-----9848898852167899762998555668-------------988988643103 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDG-----RGELTGFDIDLIKEVAHRLNLKVEFFET-------------AVSGLITGLDTN 101 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~-----~g~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~~~~~~~l~~g 101 (274) ..+++|++- .+|||.+...+. ..++.||.+|+++.++++++++++++.. .|++++.++.+| T Consensus 383 ~~~l~v~~~-~~~P~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~lnf~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~~ 461 (823) T 3kg2_A 383 QKTVVVTTI-LESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYG 461 (823) T ss_dssp CCCEEEEEC-CCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTT T ss_pred CCCCCCCCC-CCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC T ss_conf 741000554-5698199947888889986453576999999886459607999877787587658887514566432000 Q ss_pred CCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC------------------------------------ Q ss_conf 221100-0036756754200233322222222211122221111------------------------------------ Q gi|254781112|r 102 RYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSF------------------------------------ 144 (274) Q Consensus 102 ~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~------------------------------------ 144 (274) ++|+.. ++++|++|.+.++||.||+.....+++++......++ T Consensus 462 ~~D~ai~~~~it~~r~~~v~fs~p~~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 541 (823) T 3kg2_A 462 KADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYE 541 (823) T ss_dssp SCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC------ T ss_pred CCCEEEEEEEECHHHHHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH T ss_conf 23469999997078751224353114533699997577777208898703638999999999999999999999855464 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254781112|r 145 -------------------------------------------------------------------------------- 144 (274) Q Consensus 145 -------------------------------------------------------------------------------- 144 (274) T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~p~s~~~R~l~~~~~l~~lil~~~Y~a~L~s~lt~~~~~ 621 (823) T 3kg2_A 542 WHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV 621 (823) T ss_dssp -----------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 31400025655555421110069999999999986677643346568999999999999999999998777521345457 Q ss_pred ------CCCCC---CCEEEECCCHHHHHHHCCCC--------------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf ------12334---32023101012233201345--------------42133685577775544321003665589999 Q gi|254781112|r 145 ------KDLTD---KTVAQILGTDLSRFAKELKS--------------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFN 201 (274) Q Consensus 145 ------~dL~g---~~V~~~~g~~~~~~l~~~~~--------------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~ 201 (274) +||.. ..++...++....++++... ......+..+++..+..++.++++..+..... T Consensus 622 ~~i~sl~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 701 (823) T 3kg2_A 622 SPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNE 701 (823) T ss_dssp CCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHH T ss_pred CCCCCHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHH T ss_conf 89789999974788559996470799999865526799999986324742235899999999972698689996279999 Q ss_pred HHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 998458766732623677687707999818998999999999999997985999998767888 Q gi|254781112|r 202 FLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274) |..+... .......+.....+++++++|++| +++.+|+.|.++.++|-++.+.+|||..- T Consensus 702 y~~~~~~--~~~~~~~~~~~~~~~~~~~~k~Sp-~~~~~n~~i~~l~e~Gl~~~~~~~~~~~~ 761 (823) T 3kg2_A 702 YIEQRKP--CDTMKVGGNLDSKGYGIATPKGSS-LGTPVNLAVLKLSEQGLLDKLKNKWWYDK 761 (823) T ss_dssp HHHTSTT--CCEEEESCCSSCEEECCEEETTCS-SHHHHHHHHHHHHHTTHHHHHHHHHHTTS T ss_pred HHHHCCC--CCEEEECCCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHC T ss_conf 9996179--885995861456617999899884-18999999999974789999999888757 No 29 >2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Probab=99.35 E-value=9.7e-13 Score=97.14 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=117.9 Q ss_pred EHHHHHHH-CCCCCCCCCC-CHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 16789976-2998555668-988988643103221100-00367567542002333222222222111222211111233 Q gi|254781112|r 72 LIKEVAHR-LNLKVEFFET-AVSGLITGLDTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLT 148 (274) Q Consensus 72 l~~~i~~~-lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~ 148 (274) +...++++ .|++++++.. .+..++++|.+|++|++. +......+.+...+...+......++.+++. .+++++||+ T Consensus 33 ~a~gl~~~~~gl~ve~~~~~g~~~~i~al~sg~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~dLk 111 (231) T 2ozz_A 33 LASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQL-ICRKGESGN 111 (231) T ss_dssp HHHHHHHTTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEE-EEETTCGGG T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEEEECCCCCCCCCC-CCCCCCCCC T ss_conf 8766999853982899994483999999986994779727188999996699859999503332245545-667831059 Q ss_pred CCCEEEECCCHHHHHHHCCC-----CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC--CCCC Q ss_conf 43202310101223320134-----5421336855777755443210036655899999984587667326236--7768 Q gi|254781112|r 149 DKTVAQILGTDLSRFAKELK-----SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD--RMKD 221 (274) Q Consensus 149 g~~V~~~~g~~~~~~l~~~~-----~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 221 (274) |||||+..|+..+.++.+.+ .+++.. +..+...+|.+|++|+++.+.........+.... ..... .... T Consensus 112 Gk~Vgv~~~s~~~~~L~~~g~~~~~v~~v~~-~~~~~~~al~~G~iDa~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 187 (231) T 2ozz_A 112 VKRVGLDSRSADQKIMTDVFFGDSDVERVDL-SYHESLQRIVKGDVDAVIWNVVAENELTMLGLEA---TPLTDDPRFLQ 187 (231) T ss_dssp CCEEEECTTCHHHHHHHHHHHTTSCCEEEEC-CHHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEE---EECCSCHHHHH T ss_pred CCEEEECCCCHHHHHHHHCCCCCCCEEEEEC-CHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCE---EEECCCCCCCC T ss_conf 9999988998699999984998455599974-8899999987197349996838999986378743---77104665556 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 77079998189989999999999999979859999987 Q gi|254781112|r 222 NSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDR 259 (274) Q Consensus 222 ~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~k 259 (274) .....++++|+++.+...++..+.. .++.++.++ T Consensus 188 ~~~~vi~vrk~~~~l~~lv~a~v~~----~~v~~~Q~~ 221 (231) T 2ozz_A 188 ATEAVVLTRVDDYPMQQLLRAVVDK----HALLAHQQR 221 (231) T ss_dssp TTCEEEEEETTCHHHHHHHHHHCCH----HHHHHHHHH T ss_pred CCEEEEEECCCCHHHHHHHHHHHHH----HHHHHHHHH T ss_conf 7549999969989999999999848----999999999 No 30 >3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Probab=99.26 E-value=8.8e-12 Score=91.20 Aligned_cols=210 Identities=14% Similarity=0.202 Sum_probs=138.3 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH--HCCCCH-- Q ss_conf 589589996289987248704699848898852167899762998555668-988988643103221100--003675-- Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV--NVAITP-- 113 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~--~~~~t~-- 113 (274) +.++|++|+-+...|-.. ...--.+++.+.+.+|++++++.. ++..+++++.+|++|+++ +.++-. T Consensus 2 d~~~l~fg~~p~~~~~~~---------~~~~~pl~~~L~~~lG~~V~~~~~~dy~~~ieal~~g~vDia~~~~~~~~~a~ 72 (310) T 3n5l_A 2 DQPVINFGIISTESSQNL---------KSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAV 72 (310) T ss_dssp CCCEEEEEECCSSCHHHH---------HHHHHHHHHHHHHHHSSEEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHH T ss_pred CCCEEEEEECCCCCHHHH---------HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHHH T ss_conf 998699997789999999---------99999999999997699579997599999999997699868998928999998 Q ss_pred HHHHHHCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCC----CCCEEEEC-----CCHHH-HHH-HCCC------CCC Q ss_conf 675420023332-----22222222111222211111233----43202310-----10122-332-0134------542 Q gi|254781112|r 114 ERQKKYDFSIPY-----IAHRVLLVVRSDQQDIRSFKDLT----DKTVAQIL-----GTDLS-RFA-KELK------SHL 171 (274) Q Consensus 114 eR~~~~~fs~p~-----~~~~~~~~~~~~~~~~~~~~dL~----g~~V~~~~-----g~~~~-~~l-~~~~------~~~ 171 (274) +|....-|..+. ......+++|+|+ .+++++||. |++++... |+... .++ .+.+ .+. T Consensus 73 ~~~~~~~~~~~~~~~g~~~y~s~liv~~ds-~i~sl~DL~gk~kg~~~a~~d~~Stsg~l~p~~~l~~~~gi~~~~~f~~ 151 (310) T 3n5l_A 73 DRAHGEIFAQTVAASGAPGYWSLLIANKDS-KIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKR 151 (310) T ss_dssp HHSCEEEEEEEEETTCCSEEEEEEEEETTC-SCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSE T ss_pred HCCCCEEEEEEECCCCCCCCEEEEEEECCC-CCCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEE T ss_conf 605980566520347887610899996887-7665777741000000024787632788999999998649984004234 Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC--CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHH Q ss_conf 1336855777755443210036655899999984587667326236--776877079998189-9899999999999999 Q gi|254781112|r 172 VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD--RMKDNSAVAFMMRKG-NNKLTRSINEILCAIH 248 (274) Q Consensus 172 ~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~ 248 (274) +.+.+++..+.+|.+|++|+++.+......+....+.....+++.. ++... ..++++++ ++++++.|.++|-.+. T Consensus 152 v~~~sh~~~~~aV~~G~vDaa~~~~~~~~~~~~~~~~~~~~lrvI~~S~~iP~--~~i~~~~~l~~e~~~~i~~all~~~ 229 (310) T 3n5l_A 152 TLNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPG--DPLVWRNNLSDEQKNKLRDFFFKYG 229 (310) T ss_dssp EEECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEEC--CEEEEETTSCHHHHHHHHHHHHHCC T ss_pred EECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCHHHHHCCEEEEECCCCCC--CEEEEECCCCHHHHHHHHHHHHHCC T ss_conf 76078388999998699878985179999999847044516269986799888--7389929899999999999998468 Q ss_pred HCCHHHHHHHHH Q ss_conf 798599999876 Q gi|254781112|r 249 LDGTYKKIFDRY 260 (274) Q Consensus 249 ~~G~~~~I~~kw 260 (274) .+++..++.+.+ T Consensus 230 ~~~e~~~iL~~~ 241 (310) T 3n5l_A 230 ANAEQKKVLADL 241 (310) T ss_dssp CSHHHHHHHHHT T ss_pred CCHHHHHHHHHC T ss_conf 997789999857 No 31 >3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Probab=99.02 E-value=2.5e-09 Score=76.02 Aligned_cols=211 Identities=14% Similarity=0.099 Sum_probs=120.2 Q ss_pred CHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHH--HHHHHC--CCCCCCCC-CCHHHHHHHHHCCCCCCCH Q ss_conf 788788589589996289987248704699848898852167--899762--99855566-8988988643103221100 Q gi|254781112|r 33 YPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIK--EVAHRL--NLKVEFFE-TAVSGLITGLDTNRYDVLV 107 (274) Q Consensus 33 ~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~--~i~~~l--g~~~~~~~-~~~~~~~~~l~~g~~D~~~ 107 (274) .++.+++..+||||..+.+.|+. +++ .++++. |++++|+. ..+..+..+|.+|++|+.. T Consensus 21 ~~a~a~~~~~lrIg~~~~~~~~~----------------va~~~G~f~~~~~~~~v~~~~~~~g~~~~~al~sG~~D~~~ 84 (324) T 3ksx_A 21 QPALAAEPAQLRIGYQKAVSSLV----------------LAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGG 84 (324) T ss_dssp ----CCCCSEEEEEEETTCHHHH----------------HHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEE T ss_pred CCCCCCCCCEEEEEEECCCCHHH----------------HHHHHCHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEE T ss_conf 86555899759999616865799----------------99984869783899827999789779999999849928896 Q ss_pred HCC--CCHHHHHHHCC--CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH----HHHCCCC-----CCE Q ss_conf 003--67567542002--333222--22222211122221111123343202310101223----3201345-----421 Q gi|254781112|r 108 NVA--ITPERQKKYDF--SIPYIA--HRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSR----FAKELKS-----HLV 172 (274) Q Consensus 108 ~~~--~t~eR~~~~~f--s~p~~~--~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~----~l~~~~~-----~~~ 172 (274) ... ..-.|.+...+ -..+.. ....+++++++ .+++++||+||+||+..|+..+. ++++.+. +++ T Consensus 85 ~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~iv~~~~s-~i~s~~DLkGK~v~v~~gs~~~~~l~~~L~~~Gl~~~dV~~v 163 (324) T 3ksx_A 85 AGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKS-ALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPL 163 (324) T ss_dssp EESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC-SCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEE T ss_pred ECHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCC-CCCCHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE T ss_conf 4659999999879985999989637984289980899-999978938998987568730679999999879973235401 Q ss_pred EECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC----CCHHH----HHHHHHHH Q ss_conf 33685577775544321003665589999998458766732623677687707999818----99899----99999999 Q gi|254781112|r 173 FSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK----GNNKL----TRSINEIL 244 (274) Q Consensus 173 ~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~~L----~~~in~~l 244 (274) .. ++.+...+|.+|++|+++......... ...+... .+...... ......+..++ +++++ ...+.++. T Consensus 164 ~~-~~~~~~~al~~G~vDa~~~~~p~~~~~-~~~g~~~-~l~~~~~~-~~~~~~~~~~~~~~~~~p~~v~~fl~a~~~a~ 239 (324) T 3ksx_A 164 YL-SPANARAAFAAGQVDAWAIWDPWYSAL-TLDGSAR-LLANGEGL-GLTGGFFLSSRRYATAWGPFVQQVMGTLNQAD 239 (324) T ss_dssp EC-CHHHHHHHHHTTCCSEEEEETTHHHHH-HHTTSEE-EEEESTTS-CCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHH T ss_pred EC-CHHHHHHHHHCCCCCEEEECCHHHHHH-HHCCCCE-EEECCCCC-CCCCCEEEECHHHHHHCHHHHHHHHHHHHHHH T ss_conf 25-826666665313500999815799999-9749948-99714446-87664389858888679899999999999999 Q ss_pred HHHHHCC-HHHHHHHHHCCCC Q ss_conf 9999798-5999998767888 Q gi|254781112|r 245 CAIHLDG-TYKKIFDRYFDKN 264 (274) Q Consensus 245 ~~l~~~G-~~~~I~~kw~g~d 264 (274) .-+.++. +..+++.+|.|.+ T Consensus 240 ~~~~~n~~~a~~~~a~~~~~~ 260 (324) T 3ksx_A 240 GLLERDRAGSIKTLAQVSGLP 260 (324) T ss_dssp HHHHHTHHHHHHHHHHHHCCC T ss_pred HHHHHCHHHHHHHHHHHHCCC T ss_conf 999979999999999998909 No 32 >2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Probab=98.79 E-value=6.3e-08 Score=67.36 Aligned_cols=207 Identities=12% Similarity=0.077 Sum_probs=113.7 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC--CCCCCCCCC-CHHHHHHHHHCCCCCCCHHCC--CCHH Q ss_conf 89589996289987248704699848898852167899762--998555668-988988643103221100003--6756 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL--NLKVEFFET-AVSGLITGLDTNRYDVLVNVA--ITPE 114 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l--g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~--~t~e 114 (274) ..+||||..+...|. .+..-+.++++. +++++++.. .+....++|.+|++|+..... .--. T Consensus 2 p~~irIGy~~~~~~~--------------~va~~~g~fe~~g~~~~Ve~~~~~~g~~~~~al~~G~iD~~~~~~~~~l~~ 67 (308) T 2x26_A 2 PEALRIGYQKGSIGM--------------VLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFA 67 (308) T ss_dssp CSEEEEEECTTCHHH--------------HHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHHHH T ss_pred CCEEEEEECCCCHHH--------------HHHHHHCHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH T ss_conf 964999757885499--------------999970978771899807999789879999999849978899573999999 Q ss_pred HHHHHCC---CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH----HHHCCCCC---CE-EECCHHHHHH Q ss_conf 7542002---333222-22222211122221111123343202310101223----32013454---21-3368557777 Q gi|254781112|r 115 RQKKYDF---SIPYIA-HRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSR----FAKELKSH---LV-FSHNFEQSLQ 182 (274) Q Consensus 115 R~~~~~f---s~p~~~-~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~----~l~~~~~~---~~-~~~~~~~~~~ 182 (274) +.+.... ...... ....+++++++ .+++++||+||+||+..|+..+. ++++.+.. +. ..-+..+... T Consensus 68 ~~~G~~~~~v~~~~~~~~~~~~~~~~~s-~i~s~~DLkGK~Iav~~g~~~~~~~~~~L~~~Gl~~~dv~~v~~~~~~~~~ 146 (308) T 2x26_A 68 QAAGADLVYVGVEPPKPKAEVILVAENS-PIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARA 146 (308) T ss_dssp HHTTCCEEEEEEECCCGGGEEEEEETTC-SCCSGGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHH T ss_pred HHCCCCEEEEEEECCCCCEEEEEECCCC-CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH T ss_conf 9879897999997057744899987898-879988946972233588658999999999839984244763058256777 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC----CCHHH----HHHHHHHHHHHHHCC-HH Q ss_conf 5544321003665589999998458766732623677687707999818----99899----999999999999798-59 Q gi|254781112|r 183 LLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK----GNNKL----TRSINEILCAIHLDG-TY 253 (274) Q Consensus 183 ~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~~L----~~~in~~l~~l~~~G-~~ 253 (274) +|.+|++|+++...........+ +... .+... .-....+..+++++ ++|+. +..+.++.+-+.++. +. T Consensus 147 al~~g~vda~~~~ep~~~~~~~~-g~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~p~~v~~fl~a~~~a~~~~~~~p~ea 223 (308) T 2x26_A 147 AFQQGNVDAWAIWDPYYSAALLQ-GGVR-VLKDG-TDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQS 223 (308) T ss_dssp HHHTTSSSEEEEETTHHHHHHHH-SSEE-EEEES-TTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHH T ss_pred HHHCCCCCEEEECCHHHHHHHHC-CCCE-EEEEC-CCCCCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHH T ss_conf 76422554899636169999975-9948-99735-656877448996168888796999999999999999999799999 Q ss_pred HHHHHHHCCCC Q ss_conf 99998767888 Q gi|254781112|r 254 KKIFDRYFDKN 264 (274) Q Consensus 254 ~~I~~kw~g~d 264 (274) .+++.+|+|.+ T Consensus 224 ~~~~a~~~~~~ 234 (308) T 2x26_A 224 IALLAKTMGLP 234 (308) T ss_dssp HHHHHHHHTCC T ss_pred HHHHHHHHCCC T ss_conf 99999998909 No 33 >3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Probab=98.71 E-value=4.6e-09 Score=74.42 Aligned_cols=210 Identities=13% Similarity=0.012 Sum_probs=111.4 Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHC--CCCHHHHHH Q ss_conf 589996289987248704699848898852167899762998555668-98898864310322110000--367567542 Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNV--AITPERQKK 118 (274) Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~--~~t~eR~~~ 118 (274) +++|+. +|-|. +++.++.+-.-+..+++.|++++++.. ++......|.+|++|+..+. .....|.+. T Consensus 4 ~v~~~l--~w~p~--------~~~ap~~vA~~~G~f~~~Gl~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g 73 (302) T 3ix1_A 4 TVEVML--DWYPN--------AVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKD 73 (302) T ss_dssp EEEEEC--SSSCC--------GGGHHHHHHHHTTHHHHTTEEEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTT T ss_pred CEEEEE--CCEEC--------CCCHHHHHHHHCCHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCC T ss_conf 179984--88766--------06499999998893898497189995798059999997799898997758999987334 Q ss_pred HCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH----HHHCCCC---CCEEECCHHHHHHHHHHHH Q ss_conf 002---33322222222211122221111123343202310101223----3201345---4213368557777554432 Q gi|254781112|r 119 YDF---SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSR----FAKELKS---HLVFSHNFEQSLQLLLSKR 188 (274) Q Consensus 119 ~~f---s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~----~l~~~~~---~~~~~~~~~~~~~~l~~gr 188 (274) ... ...+......+++++++ .+++++||+||+||+..+...+. ++++.+. ++..+........+|.+|+ T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~-~i~~~~DLkGK~v~~~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~~~~~~al~~G~ 152 (302) T 3ix1_A 74 LPVVSVASVVRSPLNHVMFLAEQ-DFDSPADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFELGASIVSGR 152 (302) T ss_dssp CCEEEEEEEECSCCEEEEEEGGG-CCSSGGGGTTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTCHHHHHHHSS T ss_pred CCEEEEEEEECCCCCEEEEECCC-CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCC T ss_conf 88589985405897369985377-98887895676221789977899999999972899761178458843899998599 Q ss_pred HHCCCCCHHHHHHH-HHHCCCCCCCEEECCCCCCC-CCEEEEEEC----CCHHHH----HHHHHHHHHHHHCC-HHHHHH Q ss_conf 10036655899999-98458766732623677687-707999818----998999----99999999999798-599999 Q gi|254781112|r 189 TDATMIPDIPFFNF-LERRPHDGNLFKIADRMKDN-SAVAFMMRK----GNNKLT----RSINEILCAIHLDG-TYKKIF 257 (274) Q Consensus 189 vD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k----~~~~L~----~~in~~l~~l~~~G-~~~~I~ 257 (274) +|+++......... ++.................. ....++.++ ++|+.. ..+.++..-+.++. +..+++ T Consensus 153 iDa~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~v~~f~~A~~~a~~~~~~~p~ea~~~~ 232 (302) T 3ix1_A 153 ADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWRAALKGYEWMVENPDEALNVL 232 (302) T ss_dssp SSEEEEEETTTHHHHHHHTTCCEEEECGGGTTCCCCCSEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHHSHHHHHHHH T ss_pred CCEECCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCCCCEECCHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH T ss_conf 77000654660899998628763222588709888766311046999987969999999999999999997999999999 Q ss_pred HHHCC Q ss_conf 87678 Q gi|254781112|r 258 DRYFD 262 (274) Q Consensus 258 ~kw~g 262 (274) .+++. T Consensus 233 ~~~~~ 237 (302) T 3ix1_A 233 LTNQD 237 (302) T ss_dssp HHTSC T ss_pred HHHCC T ss_conf 98575 No 34 >3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium} Probab=98.52 E-value=1.9e-08 Score=70.53 Aligned_cols=214 Identities=12% Similarity=0.082 Sum_probs=117.6 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCC--CCC-CCCCHHHHHHHHHCCCCCCCH--HCCCCH Q ss_conf 589589996289987248704699848898852167899762998--555-668988988643103221100--003675 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLK--VEF-FETAVSGLITGLDTNRYDVLV--NVAITP 113 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~--~~~-~~~~~~~~~~~l~~g~~D~~~--~~~~t~ 113 (274) +..+|++++.+++- +.+.++-+.--+.+.+.+++|.+ |++ +..++...+++|.+|++|++. ..++-. T Consensus 6 ~~~~l~~~~~~~~~--------~~~~~~~~~~pl~~~Ls~~l~~~V~V~~~~~~Dy~~~ieal~~g~~Dia~~gp~~yv~ 77 (344) T 3myu_A 6 SDNTLIFNISLDHN--------ADTSIEKFFTVFSKKLSGKLNKKINVNFNIVDDSFTKINNIQANKADFAFVNSQAIAS 77 (344) T ss_dssp --CEEEEEECCCTT--------GGGTHHHHHHHHHHHHHHHHTSCCEEEEEECCCHHHHHHHHHTTSCSEEEECGGGCCC T ss_pred CCCCEEEEECCCCC--------CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHH T ss_conf 88816999604888--------5788999999999999998689658999964879999999977995689979099997 Q ss_pred HHHHH-----------------------------------HCCCCCCC-------------------------CCCCCCC Q ss_conf 67542-----------------------------------00233322-------------------------2222222 Q gi|254781112|r 114 ERQKK-----------------------------------YDFSIPYI-------------------------AHRVLLV 133 (274) Q Consensus 114 eR~~~-----------------------------------~~fs~p~~-------------------------~~~~~~~ 133 (274) .+.+. ..+..||. ....+++ T Consensus 78 a~~~~~~~~l~~~~~~~~~d~~~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Y~~~I~ 157 (344) T 3myu_A 78 NNWFGYTPLIQTLTTAFKEDLELDYYEDGNLQKKAEKTNLLFLSPPYKEWDDIKQKWTGNRYDFLYEPSKLVSFYRSMIL 157 (344) T ss_dssp CTTSSEEEEEEEEEEEETTBCSCCCGGGTHHHHHHHHHHHHHHSSCGGGCCTTTTTBCSSSBGGGEEEEEEESEEEEEEE T ss_pred HHHHCCCCHHHEEHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 56515530200001013455554222466312322221000124543334443223567554221024567663268999 Q ss_pred CCC---------CCCCCCCCCCCCCCCEEEEC-----CCHHH-HHHHCCCC---------CCEEECCHHHHHHHHHHHHH Q ss_conf 111---------22221111123343202310-----10122-33201345---------42133685577775544321 Q gi|254781112|r 134 VRS---------DQQDIRSFKDLTDKTVAQIL-----GTDLS-RFAKELKS---------HLVFSHNFEQSLQLLLSKRT 189 (274) Q Consensus 134 ~~~---------~~~~~~~~~dL~g~~V~~~~-----g~~~~-~~l~~~~~---------~~~~~~~~~~~~~~l~~grv 189 (274) ++. ....+++++||+|++|+... |+.+. .++.+.+. +.....+++..+..+.+|++ T Consensus 158 v~~~~~~~~~ikk~s~ik~l~DLkGk~iaf~d~~StSGyl~P~~~L~~~g~~~~~~~~~~~~~~~g~h~~~~~aV~~G~~ 237 (344) T 3myu_A 158 ITGSASEITAIKKAWNEKNWNQFMKFGIGHGQTNSASRFELPDLLFRKHFAKNYPGLQNAINSDPDKFAVVRGREIGINK 237 (344) T ss_dssp EEESHHHHHHHHHHHHHTCHHHHHTTCEEECCTTCTTTTHHHHHHHHHHHCTTCCCHHHHHHHCGGGEEECCGGGTTSST T ss_pred EECCCHHHHHHHCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEEECCCCHHHHHHHHHCCCC T ss_conf 80572011001036553788896698788348973122388999999814877761221144037857999999977998 Q ss_pred HCCCCCHH-----------HHHHHHHHCCCCCCCEEECC--CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 00366558-----------99999984587667326236--776877079998189-98999999999999997985999 Q gi|254781112|r 190 DATMIPDI-----------PFFNFLERRPHDGNLFKIAD--RMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKK 255 (274) Q Consensus 190 D~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~ 255 (274) |+.+.-.. .....+...+.....+++.. ++... ..++++++ ++++++.|-++|-.|.++++ . T Consensus 238 Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~S~~iP~--~~i~v~~~L~~e~~~~I~~all~l~~~~e--~ 313 (344) T 3myu_A 238 NIKIVFDDANSFSWTQNIKGSKRPFYTPIDPNDRLEILTYSDPLLY--DIGIVSNNLSRIYQKAIGEIFIELAQSSE--D 313 (344) T ss_dssp TCCEEEEETTGGGGSCCCC---CCSSCCSSTTSEEEEEEEEEEEEC--CEEEEETTSCHHHHHHHHHHHHHHHHTTC--C T ss_pred CEEEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC--CCEEEECCCCHHHHHHHHHHHHHHCCCCC--C T ss_conf 8798733203443101310134554226565554489997899888--72899389999999999999996157853--5 Q ss_pred HHHHHCCCC Q ss_conf 998767888 Q gi|254781112|r 256 IFDRYFDKN 264 (274) Q Consensus 256 I~~kw~g~d 264 (274) .+-..+|.| T Consensus 314 ~~~~~~g~n 322 (344) T 3myu_A 314 LYGPSIGYN 322 (344) T ss_dssp SSGGGGTCC T ss_pred CEEEECCCC T ss_conf 142102657 No 35 >2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A Probab=98.49 E-value=2.7e-07 Score=63.44 Aligned_cols=188 Identities=10% Similarity=-0.040 Sum_probs=106.2 Q ss_pred HHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHCC--CCHHHHHHHCC--CCCC-CCCCCCCCCCCCCCCCCCCCCC Q ss_conf 7899762998555668-988988643103221100003--67567542002--3332-2222222211122221111123 Q gi|254781112|r 74 KEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNVA--ITPERQKKYDF--SIPY-IAHRVLLVVRSDQQDIRSFKDL 147 (274) Q Consensus 74 ~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~--~t~eR~~~~~f--s~p~-~~~~~~~~~~~~~~~~~~~~dL 147 (274) +-++++.|++|+++.. .+...++.+.+|++|+..... .-..+.+.... -..+ ......+++++++ .|++++|| T Consensus 39 ~G~f~~~GldV~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~l~v~~~s-~I~s~~DL 117 (365) T 2de3_A 39 SGFLDAAGIELDVLSGQQGTVHFTYDQPAYTRFGGEIPPLLSEGLRAPGRTRLLGITPLLGRQGFFVRDDS-PITAAADL 117 (365) T ss_dssp TTHHHHTTCEEEECBGGGTTHHHHCCSTTEEEEECSHHHHHHHHTTCTTSEEEEEEEEECCSEEEEEETTC-SCCSGGGG T ss_pred CCHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCC-CCCCHHHH T ss_conf 69799849917999678827999999759837893058999999748998699999743885089997887-77886997 Q ss_pred CCCCEEEEC--------------------------CCHHHH----HHHCCCC-----CCEEECC---------------- Q ss_conf 343202310--------------------------101223----3201345-----4213368---------------- Q gi|254781112|r 148 TDKTVAQIL--------------------------GTDLSR----FAKELKS-----HLVFSHN---------------- 176 (274) Q Consensus 148 ~g~~V~~~~--------------------------g~~~~~----~l~~~~~-----~~~~~~~---------------- 176 (274) +||+||+.. |+..+. ++++.+. +++.... T Consensus 118 kGk~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~l~~~l~~~Gl~~~dV~~v~~~~~~~~~~~~~~~~~~~~ 197 (365) T 2de3_A 118 AGRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATV 197 (365) T ss_dssp TTCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTCCCHHHHHHSSBS T ss_pred CCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCC T ss_conf 89835025664201356665431023332124577867999999999984999899376204804444444310000134 Q ss_pred ---------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC----CCHH----HHHH Q ss_conf ---------5577775544321003665589999998458766732623677687707999818----9989----9999 Q gi|254781112|r 177 ---------FEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK----GNNK----LTRS 239 (274) Q Consensus 177 ---------~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~~----L~~~ 239 (274) ......+|.+|+||+++.......... +... .................+++++ ++|+ ++.. T Consensus 198 ~~~~~~~~~~~~~~aAL~~G~VDA~~~~~P~~~~~~-~~g~-~~v~~~~~~~~~~~~~~l~~~~~~~~~~p~~v~~f~~A 275 (365) T 2de3_A 198 KGADLFPDVARGQAAVLASGDVDALYSWLPWAGELQ-ATGA-RPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDA 275 (365) T ss_dssp SHHHHSTTHHHHHHHHHHSSSCSEEEEEHHHHHHHH-HTTE-EESSCGGGSGGGCEEEEEEEEHHHHHHCHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHH-HCCC-CEEEECCCCCCCCCCCEEEECHHHHHHCHHHHHHHHHH T ss_conf 443212344204899997698269996575599998-6599-46974222355544423661499987685999999999 Q ss_pred HHHHHHHHHHCC-HHHHHHHHHCCCC Q ss_conf 999999999798-5999998767888 Q gi|254781112|r 240 INEILCAIHLDG-TYKKIFDRYFDKN 264 (274) Q Consensus 240 in~~l~~l~~~G-~~~~I~~kw~g~d 264 (274) +.++..-+.++- +..+++.+|++.+ T Consensus 276 ~~~a~~~~~~np~ea~~~la~~~~~~ 301 (365) T 2de3_A 276 AVDAGLWARDHSDAVTSLHAANLGVS 301 (365) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCC T ss_conf 99999999979999999999987919 No 36 >3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis} Probab=98.26 E-value=7.6e-07 Score=60.66 Aligned_cols=204 Identities=11% Similarity=0.016 Sum_probs=111.5 Q ss_pred HHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH-H-CC- Q ss_conf 8788589589996289987248704699848898852167899762998555668-988988643103221100-0-03- Q gi|254781112|r 35 FRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV-N-VA- 110 (274) Q Consensus 35 ~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~-~~- 110 (274) ....+.++|+||+.+. |+. + +..+.++.++++.|++++++.. ++....++|.+|++|+-. + .. T Consensus 17 ~~~~~~~~i~ig~~~~--~~~----~-------~~~~~v~~~~k~~Gi~Ve~v~f~d~~~~n~AL~~G~iD~n~~q~~p~ 83 (275) T 3gxa_A 17 DNGAAKKEIVFGTTVG--DFG----D-------MVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPY 83 (275) T ss_dssp ------CEEEEEEETT--HHH----H-------HHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHH T ss_pred CCCCCCCEEEEEEECC--CHH----H-------HHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEECCCCHHH T ss_conf 6778885289996069--879----9-------99999899999659879999957833578998669955431445788 Q ss_pred ---CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCHHH-H---HHHCCCC------------- Q ss_conf ---67567542002333222222222111222211111233-4320231010122-3---3201345------------- Q gi|254781112|r 111 ---ITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTDLS-R---FAKELKS------------- 169 (274) Q Consensus 111 ---~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~~~-~---~l~~~~~------------- 169 (274) ++.++...+....+.+..+..++++ .+++++||+ |++|++..+.+.. + .+++.+. T Consensus 84 l~~~~~~~g~~l~~v~~~~~~~~glys~----k~ksl~dl~~G~kIaip~d~sn~~raL~~L~~~Gli~l~~~~~~~~~t 159 (275) T 3gxa_A 84 LDDFKKEHNLDITEVFQVPTAPLGLYPG----KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTAS 159 (275) T ss_dssp HHHHHHHHTCCEEEEEECCBCCCEEEES----SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCC T ss_pred HHHHHHHCCCCEEEEEEEECCCEEEEEC----CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCC T ss_conf 9999997799679985631155066632----656541358999899824863688999999866953116887755454 Q ss_pred -----------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHH Q ss_conf -----------421336855777755443210036655899999984587667326236776877079998189--9899 Q gi|254781112|r 170 -----------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKL 236 (274) Q Consensus 170 -----------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L 236 (274) +++.. +..+..+.| +.+|+++.....+ ............. +........+++|++ |++. T Consensus 160 ~~di~~n~~~l~~~~~-~~~~l~~~l--~dvD~avi~~~~~----~~agl~~~~~l~~-e~~~~y~nvivvr~~~~d~~~ 231 (275) T 3gxa_A 160 KADIAENLKNIKIVEL-EAAQLPRSR--ADVDFAVVNGNYA----ISSGMKLTEALFQ-EPSFAYVNWSAVKTADKDSQW 231 (275) T ss_dssp GGGEEECTTCCEEEEE-CGGGHHHHT--TTSSEEEECHHHH----HHTTCCGGGCSEE-CCCCTTCCEEEEEGGGTTCHH T ss_pred CCHHHHCCCCCEEEEC-CHHHHHHHC--CCCCEEEECCCHH----HHCCCCHHHCCCC-CCCCCEEEEEEEECCCCCCHH T ss_conf 0004327656459985-666631312--6755899646468----7759982340002-778763699998076779599 Q ss_pred HHHHHHHHHHHHHCCHHHHHHH-HHCCCCCCC Q ss_conf 9999999999997985999998-767888775 Q gi|254781112|r 237 TRSINEILCAIHLDGTYKKIFD-RYFDKNIIS 267 (274) Q Consensus 237 ~~~in~~l~~l~~~G~~~~I~~-kw~g~d~~~ 267 (274) ...+-+++ ++.+..+.++ +|=|.-+++ T Consensus 232 ik~l~ea~----~s~ev~~~i~~~y~G~~~pa 259 (275) T 3gxa_A 232 LKDVTEAY----NSDAFKAYAHKRFEGYKSPA 259 (275) T ss_dssp HHHHHHHT----TSHHHHHHHHHHSTTCBCCT T ss_pred HHHHHHHH----CCHHHHHHHHHHCCCEEECC T ss_conf 99999997----69999999998779918825 No 37 >1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Probab=98.07 E-value=2.5e-06 Score=57.45 Aligned_cols=214 Identities=11% Similarity=0.058 Sum_probs=104.1 Q ss_pred CHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH-H-C Q ss_conf 788788589589996289987248704699848898852167899762998555668-988988643103221100-0-0 Q gi|254781112|r 33 YPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV-N-V 109 (274) Q Consensus 33 ~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~-~ 109 (274) .+....+.++|+||+.+. |. .. .+.++..+++.|++++++.. ++.....+|.+|++|+.. + . T Consensus 31 ~~~~~~~~k~i~IG~~~~--~~--------~~-----~~~~~~~~kk~Gl~Ve~~~F~d~~~~~~AL~~G~ID~~~~~~~ 95 (295) T 1p99_A 31 TSTGSNNDKKVTIGVASN--DT--------KA-----WEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHF 95 (295) T ss_dssp ---------CEEEEESSS--CC--------HH-----HHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEEH T ss_pred CCCCCCCCCEEEEEECCC--CH--------HH-----HHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEECCCH T ss_conf 888889996499996798--38--------99-----9999999997598899998178277999997599676751789 Q ss_pred CCCHHHH-----HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEECCCHHHHHH----HCCCC---------- Q ss_conf 3675675-----420023332222222221112222111112-334320231010122332----01345---------- Q gi|254781112|r 110 AITPERQ-----KKYDFSIPYIAHRVLLVVRSDQQDIRSFKD-LTDKTVAQILGTDLSRFA----KELKS---------- 169 (274) Q Consensus 110 ~~t~eR~-----~~~~fs~p~~~~~~~~~~~~~~~~~~~~~d-L~g~~V~~~~g~~~~~~l----~~~~~---------- 169 (274) .+..... ..+....+......+++.++ ..++.| ++|++|++..+......+ ...+. T Consensus 96 p~l~~~~k~~~g~~l~~v~~~~~~~~~~~~~~----~~~i~d~~~Gk~Ia~p~~~s~~~~~l~~l~~~gli~l~~~~~~~ 171 (295) T 1p99_A 96 AFLDQYKKAHKGTKISALSTTVLAPLGIYSDK----IKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLA 171 (295) T ss_dssp HHHHHHHHHCTTCCEEEEEEEEECCCEEECSS----CSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTT T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC----CCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCC T ss_conf 99999997679955999445211231012656----66321125898578336872899999999866927745888877 Q ss_pred ----CC------EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC-CCC-CCCCEEEEEECC--CHH Q ss_conf ----42------1336855777755443210036655899999984587667326236-776-877079998189--989 Q gi|254781112|r 170 ----HL------VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD-RMK-DNSAVAFMMRKG--NNK 235 (274) Q Consensus 170 ----~~------~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~k~--~~~ 235 (274) .+ ..+.....+......|.+|+++.....+... ...+.....+.-.. ... .+....++.+.. +++ T Consensus 172 ~t~~DI~~n~~~~~~~~~~~a~~a~a~~~vDaa~i~~p~~~~a-~~~~~~~~l~~e~~~~~~~~~~~~~~~~r~~~~~~e 250 (295) T 1p99_A 172 GTVKDITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKA-GKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNK 250 (295) T ss_dssp CCGGGEEECTTCCEEEEECGGGTTGGGGTSSEEEECHHHHHHT-TCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTCH T ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHH-CCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCH T ss_conf 7876665444444545640667787327764899554399982-788666658864776666775379999784001979 Q ss_pred HHHHHHHHHHHHHHCCHHHH-HHHHHCCCCCCCCCC Q ss_conf 99999999999997985999-998767888775689 Q gi|254781112|r 236 LTRSINEILCAIHLDGTYKK-IFDRYFDKNIISSVP 270 (274) Q Consensus 236 L~~~in~~l~~l~~~G~~~~-I~~kw~g~d~~~~~~ 270 (274) ....+-+++ .+.+..+ |.+.|-|..++...| T Consensus 251 ~vk~lv~a~----~s~E~~~~I~~~~~~~~~pv~~s 282 (295) T 1p99_A 251 TYAKIVELY----HSKEAQKALQEDVKDGEKPVNLS 282 (295) T ss_dssp HHHHHHHHH----HSHHHHHHHHHHHTTSSEECCCC T ss_pred HHHHHHHHH----CCHHHHHHHHHCCCCCEEECCCC T ss_conf 999999997----89999999997148875787399 No 38 >1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Probab=97.96 E-value=1e-06 Score=59.90 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=84.1 Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCC-HHHHHHHHHCCCCCCCHHCCCC------- Q ss_conf 58999628998724870469984889885216789976-29985556689-8898864310322110000367------- Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETA-VSGLITGLDTNRYDVLVNVAIT------- 112 (274) Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~-~~~~~~~l~~g~~D~~~~~~~t------- 112 (274) .|++++.+ | .|.+.-+...|.+.+.+. -|++++.++.. ...-+..|.+|++|+....+.. T Consensus 20 ~l~i~tg~---~--------gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d~a~~~~~~~~~~~~~ 88 (314) T 1us5_A 20 FITIGSGS---T--------TGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQG 88 (314) T ss_dssp EEEEECCC---T--------TSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHT T ss_pred EEEEEECC---C--------CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHC T ss_conf 48999799---9--------971499999999999735898489998078889999999769971999750899999846 Q ss_pred -----HH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-CCHH----HHHHHCCCC-----CCEEEC Q ss_conf -----56--754200233322222222211122221111123343202310-1012----233201345-----421336 Q gi|254781112|r 113 -----PE--RQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQIL-GTDL----SRFAKELKS-----HLVFSH 175 (274) Q Consensus 113 -----~e--R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~-g~~~----~~~l~~~~~-----~~~~~~ 175 (274) .+ ..+.+.---+++.....+++|+++ .+++++||+|+||++.. |+.. ..+++..+. ..+... T Consensus 89 ~g~~~~~~~~~~~lr~v~~~~~~~~~~~v~~ds-~I~s~~DL~Gkrv~~g~~gs~~~~~~~~~l~~~g~~~~d~~~v~~~ 167 (314) T 1us5_A 89 CCIPAFEGKPVKTIRALAALYPEVVHVVARKDA-GIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRV 167 (314) T ss_dssp CSSTTTTTCCCTTEEEEEEEEEEEEEEEEETTS-SCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECC T ss_pred CCCCCCCCCCCCCEEEEEEECHHHHEEEECCCC-CCCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEC T ss_conf 687533457540402788705113313303777-7677888088775136888513668999999809983446323426 Q ss_pred CHHHHHHHHHHHHHHCCCC Q ss_conf 8557777554432100366 Q gi|254781112|r 176 NFEQSLQLLLSKRTDATMI 194 (274) Q Consensus 176 ~~~~~~~~l~~grvD~~~~ 194 (274) +..++..+|.+|++|+++. T Consensus 168 ~~~~~~~al~~g~iDa~~~ 186 (314) T 1us5_A 168 SASQGIQLMQDKRADALFY 186 (314) T ss_dssp CHHHHHHHHHTTSCSEEEE T ss_pred CHHHHHHHHHCCCCCEEEE T ss_conf 8889999974797527998 No 39 >1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Probab=97.93 E-value=1.1e-05 Score=53.53 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=108.4 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH-HCC-----CC Q ss_conf 89589996289987248704699848898852167899762998555668-988988643103221100-003-----67 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV-NVA-----IT 112 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~~~-----~t 112 (274) .++||||..+. |.. . -.++++..+++.|++++++.. ++.....+|.+|++|+.. +.. +. T Consensus 2 ~~ti~iG~~~~--~~~-------~-----~l~~~k~~~k~~Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~ 67 (241) T 1xs5_A 2 DETVGVGVLSE--PHA-------R-----LLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFN 67 (241) T ss_dssp CEEEEEEECST--THH-------H-----HHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHH T ss_pred CCEEEEEECCC--CHH-------H-----HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHH T ss_conf 93299996069--859-------9-----999999999974988999993881778999976997679855788999988 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCHHHHHH----HCCC-CC-------------C-- Q ss_conf 56754200233322222222211122221111123-34320231010122332----0134-54-------------2-- Q gi|254781112|r 113 PERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDL-TDKTVAQILGTDLSRFA----KELK-SH-------------L-- 171 (274) Q Consensus 113 ~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL-~g~~V~~~~g~~~~~~l----~~~~-~~-------------~-- 171 (274) ......+....++......++.++ +.++.|+ +|++|++..++..+..+ .+.+ .. + T Consensus 68 ~~~~~~l~~v~~~~~~~~~l~~~~----~~s~~d~~~gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~~~~~~Di~~ 143 (241) T 1xs5_A 68 QEHNGDLVSVGNVHVEPLALYSRT----YRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQ 143 (241) T ss_dssp HHHTCCEEEEEEEEECCCEEECSS----CCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEE T ss_pred HHCCCCEEEEEEECCCCEEEEECC----CCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHH T ss_conf 546973899988414654888368----6776673488769825888279999999997588134368887677656653 Q ss_pred ----EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHH Q ss_conf ----1336855777755443210036655899999984587667326236776877079998189--9899999999999 Q gi|254781112|r 172 ----VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILC 245 (274) Q Consensus 172 ----~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~ 245 (274) ......+.+......|.+|+++......... ........+.... ...+....+++++. +++....+-+++ T Consensus 144 ~~~~~~~~~~~~a~~a~~~~~vda~~~~~p~~~~a--~~~~~~~~l~~~~-~~~~~~~~lv~r~~~~~~~~i~~l~~a~- 219 (241) T 1xs5_A 144 NVRNVVLQEVESALLPRVFDQVDGAVINGNYAIMA--GLSARRDGLAVEP-DASAYANVLVVKRGNEADARVQAVLRAL- 219 (241) T ss_dssp CTTCCEEEEECGGGHHHHGGGSSEEEECHHHHHHT--TCCTTTTCSEECS-CGGGGCEEEEEETTCTTCHHHHHHHHHH- T ss_pred CCCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHH--CCCCCCCEEEECC-CCCCEEEEEEECCHHHCCHHHHHHHHHH- T ss_conf 43445425744767777427775799646489985--5887667799637-8986379999834010989999999997- Q ss_pred HHHHCCHH-HHHHHHHCCCCCC Q ss_conf 99979859-9999876788877 Q gi|254781112|r 246 AIHLDGTY-KKIFDRYFDKNII 266 (274) Q Consensus 246 ~l~~~G~~-~~I~~kw~g~d~~ 266 (274) .+.+. +-|.++|=|..+. T Consensus 220 ---~~~ev~~~I~~~~~g~~~~ 238 (241) T 1xs5_A 220 ---CGGRVRTYLKERYKGGEVA 238 (241) T ss_dssp ---TSHHHHHHHHHHCTTSSSE T ss_pred ---CCHHHHHHHHHHCCCCEEE T ss_conf ---7999999999877998672 No 40 >2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A Probab=97.92 E-value=2.2e-05 Score=51.60 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=102.0 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCC--CC----CCHHHHHHHHHCCCCCCCH-HCCC Q ss_conf 589589996289987248704699848898852167899762998555--66----8988988643103221100-0036 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEF--FE----TAVSGLITGLDTNRYDVLV-NVAI 111 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~--~~----~~~~~~~~~l~~g~~D~~~-~~~~ 111 (274) ++-+++++. .||+-... ++ ++ -.+.+.|.++.|=++++ .+ .+...+++.++.|.+|+.. ..++ T Consensus 32 ~~~tlk~~~--~~p~~~~~-----~~--~~-~~f~~~V~e~t~G~i~i~~~~~g~Lg~~~e~~~~v~~G~~d~~~~~~~~ 101 (361) T 2zzv_A 32 RRYRWRIQT--AWDAGTVG-----YS--LF-QKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLY 101 (361) T ss_dssp CCEEEEEEE--SSCTTSHH-----HH--HH-HHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGG T ss_pred CCEEEEEEC--CCCCCCHH-----HH--HH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCC T ss_conf 746999983--78998765-----79--99-9999999997699089999558665767999999975987525420222 Q ss_pred CHHHHHHHC-CCCCCCC------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 756754200-2333222------------------------------------222222111222211111233432023 Q gi|254781112|r 112 TPERQKKYD-FSIPYIA------------------------------------HRVLLVVRSDQQDIRSFKDLTDKTVAQ 154 (274) Q Consensus 112 t~eR~~~~~-fs~p~~~------------------------------------~~~~~~~~~~~~~~~~~~dL~g~~V~~ 154 (274) .+.+...+. ++.|++. .....+. . ...+++++||+|+++.+ T Consensus 102 ~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~-s-~kpi~s~~DlkG~kiR~ 179 (361) T 2zzv_A 102 WAGRMPVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVGPVQHDLNIIH-S-KKPIRRFEDFKGVKLRV 179 (361) T ss_dssp GTTTCGGGGGSSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEEEECCCCCCEE-E-SSCCCSGGGGTTCEEEC T ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCEEEEEEECCCCCEEEE-C-CCCCCCCCCCCCCEEEE T ss_conf 467660777723531247769999998713136789988752462999840478750342-4-88765730137957993 Q ss_pred ECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC----CC-CCCCEEEEE Q ss_conf 1010122332013454213368557777554432100366558999999845876673262367----76-877079998 Q gi|254781112|r 155 ILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR----MK-DNSAVAFMM 229 (274) Q Consensus 155 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~ 229 (274) ..+ .....++..+...+..+ ..+.+.+|.+|.+|+.........+...-..... .+..... .. ......+.+ T Consensus 180 ~~~-~~~~~~~~lGa~pv~i~-~~ev~~ALq~G~vDg~~~~~~~~~~~~~~~ev~k-y~~~~~~~~~~~~~~~~~~~~~~ 256 (361) T 2zzv_A 180 PGG-MIAEVFAAAGASTVLLP-GGEVYPALERGVIDAADFVGPAVNYNLGFHQVAK-YIIMGPPETPAIHQPVDLMDFTI 256 (361) T ss_dssp CSH-HHHHHHHHTTCEEECCC-GGGHHHHHHTTSCSEEECSCHHHHHHTTHHHHCS-EEEECCTTSSCSSCSSCCEEEEE T ss_pred CCC-HHHHHHHHCCCCCEECC-CHHHHHHHHHCCCCEEECCCHHHHHCCCCEEEEE-EEEECCCCCCCCCCCCCCHHHHC T ss_conf 583-68999997699514458-6046789874563402146265552146314678-99956777764332220035320 Q ss_pred ECC-----CHHHHHHHHHHHHHHH Q ss_conf 189-----9899999999999999 Q gi|254781112|r 230 RKG-----NNKLTRSINEILCAIH 248 (274) Q Consensus 230 ~k~-----~~~L~~~in~~l~~l~ 248 (274) +++ +++.+..|.++..+.. T Consensus 257 n~~~w~~L~~e~q~~i~~a~~~~~ 280 (361) T 2zzv_A 257 NLNRWRSLPKPLQERFIAAVHEYS 280 (361) T ss_dssp EHHHHHHSCHHHHHHHHHHHHHHH T ss_pred CHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 289997189999999999999999 No 41 >3hn0_A Nitrate transport protein; YP_001302749.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Parabacteroides distasonis} Probab=97.88 E-value=3.2e-05 Score=50.63 Aligned_cols=201 Identities=7% Similarity=-0.026 Sum_probs=104.2 Q ss_pred HCCCEEEEECCCCCC---EEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCH- Q ss_conf 589589996289987---248704699848898852167899762998555668988988643103221100-003675- Q gi|254781112|r 39 DQSALRVGTDGIYPP---HSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITP- 113 (274) Q Consensus 39 ~~~~l~v~~~~~~pP---~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~- 113 (274) +..+||||+-.+ || +.... +.+|.. +..++++++. .+.+.+...|.+|++|+.. +..... T Consensus 3 ~~~~irv~~~~~-p~~~~~~~~~-~~~~~~------------~~~~~~v~~~-~s~~~~~~~l~~G~~D~~~~~~~~~~~ 67 (283) T 3hn0_A 3 EDTVIKVSVLRG-PSVIAFADWL-ENPPII------------DNKKVQVKVV-DSPDLAQALLIKQETDIAVLPMINAAN 67 (283) T ss_dssp -CCEEEEEEESS-THHHHTHHHH-HSCCEE------------TTEEEEEEEE-SCHHHHHHHHHTTCCSEEEEEHHHHHH T ss_pred CCCEEEEEECCC-CHHHHHHHHH-HHCCCC------------CCCCEEEEEE-CCHHHHHHHHHCCCCCEEEECHHHHHH T ss_conf 886599992589-6189999999-844745------------7898689995-799999999977999899736899999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-CCCHHH----HHHHCCCCC---CEEECCHHHHHHHHH Q ss_conf 675420023332222222221112222111112334320231-010122----332013454---213368557777554 Q gi|254781112|r 114 ERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQI-LGTDLS----RFAKELKSH---LVFSHNFEQSLQLLL 185 (274) Q Consensus 114 eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~-~g~~~~----~~l~~~~~~---~~~~~~~~~~~~~l~ 185 (274) -+.+. .|+... ..... +...+.+.+||+|++|++. .|+..+ .++++.+.+ .+.+.+..+...+|. T Consensus 68 ~~~~G----~~i~ii--a~~~~-g~~~ivs~~DLkGk~i~~~~~gs~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~al~ 140 (283) T 3hn0_A 68 LYNKG----IKIKLA--GCPIW-GTLYLVEKTPLKEPALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGIL 140 (283) T ss_dssp HHHTT----CSCEEE--EEEEC-CCCEEEECSSCCSCCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHH T ss_pred HHHCC----CCEEEE--EEECC-CCCEEEEHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH T ss_conf 99689----974899--98415-863486378749899999389978999999999977998440367438288899986 Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC----CEEEEEECCCH----HHHHHHHHHHHHHHHCC-HHHHH Q ss_conf 43210036655899999984587667326236776877----07999818998----99999999999999798-59999 Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNS----AVAFMMRKGNN----KLTRSINEILCAIHLDG-TYKKI 256 (274) Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~----~L~~~in~~l~~l~~~G-~~~~I 256 (274) +|++|+++...........+.................. .....+.+.++ .+++.+.++.+-+.++. +..++ T Consensus 141 ~g~vDaa~~~eP~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~a~~~~~~~peea~~~ 220 (283) T 3hn0_A 141 AGKVNRAVLGEPFLSIALRKDSSLRITADLNHLTDNDTLGFAQTAVVYTPTMEKYRIAFEDALRASCQKAVRYPKETIHS 220 (283) T ss_dssp HTSCSEEEECTTHHHHHHHHCTTCEEEEECCCSSTTCSSCCCCEEEEECGGGGGGHHHHHHHHHHHHHHHHHCHHHHHHH T ss_pred CCCCCEEEECCHHHHHHHHCCCCEEEEEECHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHH T ss_conf 79977898443689999971798299974046326777652001798875367889999999999999998699999999 Q ss_pred HHHHC Q ss_conf 98767 Q gi|254781112|r 257 FDRYF 261 (274) Q Consensus 257 ~~kw~ 261 (274) +.|++ T Consensus 221 ~~~~~ 225 (283) T 3hn0_A 221 LEEHG 225 (283) T ss_dssp HHHTT T ss_pred HHHHC T ss_conf 99864 No 42 >2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A Probab=97.76 E-value=0.00015 Score=46.41 Aligned_cols=198 Identities=11% Similarity=-0.024 Sum_probs=105.5 Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCC--C----CCHHHHHHHHHCCCCCCCH-H Q ss_conf 7885895899962899872487046998488988521678997629985556--6----8988988643103221100-0 Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFF--E----TAVSGLITGLDTNRYDVLV-N 108 (274) Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~--~----~~~~~~~~~l~~g~~D~~~-~ 108 (274) ++++.-++|++. .+||-. +..+. + .-.+++.|.++.|=++++. + .+....++.++.|.+|+.. . T Consensus 27 ~aa~~~tlr~a~--~~p~~~----~~~~~--~-~~~fa~~V~e~T~G~v~i~~~~~g~Lg~~~e~~e~v~~G~vd~~~~~ 97 (365) T 2hzl_A 27 QSAPKVTWRLAS--SFPKSL----DTIFG--G-AEVLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTV 97 (365) T ss_dssp -----CEEEEEE--SSCTTC----TTTTH--H-HHHHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEEC T ss_pred CCCCCEEEEEEE--CCCCCC----CHHHH--H-HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEE T ss_conf 426656999980--699988----63779--9-99999999997599199999618643640658999976997531210 Q ss_pred CCCCHHHHHHH-CCCCCCC---------------------------------CC--CCCCCCCCCCCCCCCCCCCCCCCE Q ss_conf 03675675420-0233322---------------------------------22--222221112222111112334320 Q gi|254781112|r 109 VAITPERQKKY-DFSIPYI---------------------------------AH--RVLLVVRSDQQDIRSFKDLTDKTV 152 (274) Q Consensus 109 ~~~t~eR~~~~-~fs~p~~---------------------------------~~--~~~~~~~~~~~~~~~~~dL~g~~V 152 (274) .++...+...+ .+..|+. .. ....+.- ....+++++||+|++| T Consensus 98 ~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~-~~~pi~~~~DlkG~ki 176 (365) T 2hzl_A 98 GYYYWGKDPTFALAAAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGNTGVQMGGW-FRREINTVADMQGLKM 176 (365) T ss_dssp GGGGTTTCTHHHHTTCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEECCSBCCCE-ESSCCCSTGGGTTCEE T ss_pred CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCEEEEE-CCCCCCCHHHHCCCEE T ss_conf 112467774045641156768989999998613117788887876071799973588504566-5988667688449873 Q ss_pred EEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC Q ss_conf 23101012233201345421336855777755443210036655899999984587667326236776877079998189 Q gi|254781112|r 153 AQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG 232 (274) Q Consensus 153 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 232 (274) -+. | .....++..+...+..+ ..+.+.+|.+|-||+............... .....+.............+.++++ T Consensus 177 R~~-~-~~~~~~~alGa~pv~~~-~~Evy~ALqtGvVDg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~N~~ 252 (365) T 2hzl_A 177 RVG-G-FAGKVMERLGVVPQQIA-GGDIYPALEKGTIDATEWVGPYDDEKLGFF-KVAPYYYYPGWWEGGPTVHFMFNKS 252 (365) T ss_dssp ECC-T-THHHHHHTTTCEEECCC-TTSHHHHHHHTSCSEECCSCHHHHHHHTGG-GTCCEEEECBTTCSSCEEEEEEEHH T ss_pred CCC-C-HHHHHHHHCCCEEEECC-CCHHHHHHHHCCEEEEECCCHHHHHHHCCH-HEEEEEECCCCCCCCCEEEEEECHH T ss_conf 048-4-68999997497244137-502778987185215762665578870551-2146885078665652069998499 Q ss_pred -----CHHHHHHHHHHHHHH Q ss_conf -----989999999999999 Q gi|254781112|r 233 -----NNKLTRSINEILCAI 247 (274) Q Consensus 233 -----~~~L~~~in~~l~~l 247 (274) +++.+..|.++.... T Consensus 253 ~w~~Lp~e~q~~i~~a~~~a 272 (365) T 2hzl_A 253 AYEGLTPTYQSLLRTACHAA 272 (365) T ss_dssp HHHHSCHHHHHHHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHHHHH T ss_conf 98519999999999999999 No 43 >2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Probab=97.67 E-value=0.00032 Score=44.43 Aligned_cols=169 Identities=10% Similarity=0.040 Sum_probs=97.4 Q ss_pred EEHHHHHHHCCCCCCCC--C----CCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHH-CCCCCCCCCC------------- Q ss_conf 21678997629985556--6----8988988643103221100-003675675420-0233322222------------- Q gi|254781112|r 71 DLIKEVAHRLNLKVEFF--E----TAVSGLITGLDTNRYDVLV-NVAITPERQKKY-DFSIPYIAHR------------- 129 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~--~----~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~-~fs~p~~~~~------------- 129 (274) .+++.|.++.+=++++. + .+....++.++.|.+|+.. +.++.+.+...+ .|+.|++..+ T Consensus 22 ~fa~~V~~~t~G~v~i~~~~~g~L~~~~e~~~~v~~G~vd~~~~~~~~~~~~~P~~~~~~lP~l~~~~~~~~~~~~~~~~ 101 (301) T 2pfy_A 22 QFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLASSFNESEKLWKATRP 101 (301) T ss_dssp HHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTTSCSHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEECHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999998759908999956876588799999997698775221046652247301025676354779999987744468 Q ss_pred ---------------------CCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHH Q ss_conf ---------------------22221112222111112334320231010122332013454213368557777554432 Q gi|254781112|r 130 ---------------------VLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKR 188 (274) Q Consensus 130 ---------------------~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~gr 188 (274) ..+.+ ...+.+++||+|++|.+. |.....+++..+...+..+ ..+.+.+|.+|. T Consensus 102 ~~~~~~~~~g~~~l~~~~~~~~~~~~---~~pi~s~~DlkG~kiR~~-~~~~~~~~~~lGa~pv~~~-~~evy~aLq~G~ 176 (301) T 2pfy_A 102 LLAQRLDKQGIVLVYGSPWPPQGIYT---KKPVAALADLKGTRFRAY-SASTSHMAALMGAVPTTVQ-TPEVPQAFSTGV 176 (301) T ss_dssp HHHHHHHTTTEEEEEEEECCCCEEEE---SSCCSSGGGGTTCEEEEC-SHHHHHHHHHTTSEEEECC-GGGHHHHHHTTS T ss_pred HHHHHHHHCCCEEEEECCCCCCEEEE---CCCCCCHHHHCCCEEECC-CHHHHHHHHHCCCCCCCCC-CCCHHHHHHCCC T ss_conf 99999973590797751677613675---799899689769867347-4569999997588510244-420146776584 Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHH Q ss_conf 10036655899999984587667326236776877079998189-----9899999999999999 Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILCAIH 248 (274) Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~~l~ 248 (274) +|++......... ..-... ... ............+.++++ +++.+..+..+..+.. T Consensus 177 vDg~~~~~~~~~~-~~~~ev-~~~--~~~~~~~~~~~~~~~n~~~~~~L~~~~q~~l~~a~~~~~ 237 (301) T 2pfy_A 177 IDAMLTSPATGVD-SQAWDY-VKY--YYDAQAFIPQSFVIANKRAFQRLPAEVRQAVLDAGAKAE 237 (301) T ss_dssp CSBEEECHHHHHH-TTGGGT-CCE--EEECCCCCCEEEEEEEHHHHHHSCHHHHHHHHHHHHHHH T ss_pred EECCCCCCCCCCC-CCCCEE-EEE--EECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 1034247300012-334214-457--733885204889998299885399999999999999999 No 44 >3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis} Probab=97.67 E-value=3.6e-05 Score=50.31 Aligned_cols=198 Identities=11% Similarity=0.015 Sum_probs=109.9 Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH--HC----CCCH Q ss_conf 9589996289987248704699848898852167899762998555668-988988643103221100--00----3675 Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV--NV----AITP 113 (274) Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~--~~----~~t~ 113 (274) ++|+||+.+. |+. + +--+.++..+++.|++++++.. +|.+.-.+|.+|++|+-. .. .++. T Consensus 1 k~i~vg~~~~--p~~--------~---~~~e~vk~~~k~~Gi~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~ 67 (245) T 3ir1_A 1 KEIVFGTTVG--DFG--------D---MVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKK 67 (245) T ss_dssp CEEEEEEETT--HHH--------H---HHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHH T ss_pred CEEEEEECCC--CHH--------H---HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHH T ss_conf 9599980789--879--------9---99999889999659769999956852177998669965231227999999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCHH-HH---HHHCCCC------------------- Q ss_conf 67542002333222222222111222211111233-432023101012-23---3201345------------------- Q gi|254781112|r 114 ERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTDL-SR---FAKELKS------------------- 169 (274) Q Consensus 114 eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~~-~~---~l~~~~~------------------- 169 (274) ++.-.+.--.+.+..+.+++.++ +++++||+ |.+|++..+.+. .+ ++++.+. T Consensus 68 ~~g~~L~~v~~~~~~p~glYS~k----~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~GlI~lk~~~~~~~~t~~DI~~ 143 (245) T 3ir1_A 68 EHNLDITEVFQVPTAPLGLYPGK----LKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAE 143 (245) T ss_dssp HHTCCEEEEEECCBCCCEEEESS----CCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEE T ss_pred HCCCCEEEEEEEEECCEEEECCC----CCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHC T ss_conf 85996699866544242765168----68665679999899745865899999999878938965898866477645415 Q ss_pred -----CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCH--HHHHHHHH Q ss_conf -----42133685577775544321003665589999998458766732623677687707999818998--99999999 Q gi|254781112|r 170 -----HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNN--KLTRSINE 242 (274) Q Consensus 170 -----~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~L~~~in~ 242 (274) ++++. +..+..+.| ..+|+++..... ........... +..++..+....+++++++. +... T Consensus 144 Npk~l~~~ev-~~a~l~~al--~dvD~avi~~~~----~~~agl~~~~~-l~~e~~~~y~~~~vvr~~d~d~~~ik---- 211 (245) T 3ir1_A 144 NLKNIKIVEL-EAAQLPRSR--ADVDFAVVNGNY----AISSGMKLTEA-LFQEPSFAYVNWSAVKTADKDSQWLK---- 211 (245) T ss_dssp CTTCCEEEEE-CGGGSGGGG--GTSSEEEECHHH----HHHTTCCGGGC-SEECCCCTTCCEEEEEGGGTTCHHHH---- T ss_pred CCCCCEEEEC-CHHHHHHHC--CCCCEEEECCHH----HHHCCCCHHHC-EEECCCCCEEEEEEEECCCCCCHHHH---- T ss_conf 5646657876-888855532--567789971406----97879782340-01078887289999807667989999---- Q ss_pred HHHHHHHCCHHHH-HHHHHCCCCCCC Q ss_conf 9999997985999-998767888775 Q gi|254781112|r 243 ILCAIHLDGTYKK-IFDRYFDKNIIS 267 (274) Q Consensus 243 ~l~~l~~~G~~~~-I~~kw~g~d~~~ 267 (274) .|.+...|.+..+ |.++|=|.-+++ T Consensus 212 ~l~~a~~s~~v~~~i~~~~~G~~~Pa 237 (245) T 3ir1_A 212 DVTEAYNSDAFKAYAHKRFEGYKSPA 237 (245) T ss_dssp HHHHHTTSHHHHHHHHHHSTTCBCCT T ss_pred HHHHHHCCHHHHHHHHHHCCCCEECC T ss_conf 99999779999999998789928844 No 45 >2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Probab=97.67 E-value=0.00036 Score=44.13 Aligned_cols=170 Identities=12% Similarity=0.117 Sum_probs=99.6 Q ss_pred EEHHHHHHHCC--CCCCCCC----CCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHH-CCCCCCCCC-------------- Q ss_conf 21678997629--9855566----8988988643103221100-003675675420-023332222-------------- Q gi|254781112|r 71 DLIKEVAHRLN--LKVEFFE----TAVSGLITGLDTNRYDVLV-NVAITPERQKKY-DFSIPYIAH-------------- 128 (274) Q Consensus 71 dl~~~i~~~lg--~~~~~~~----~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~-~fs~p~~~~-------------- 128 (274) +.++.+.++.| +++++.+ .+...+++.+++|.+|+.. +..+.+.+...+ .|+.|++.. T Consensus 21 ~fa~~V~e~t~G~v~i~i~~~g~L~~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~~~~~~~~~~ 100 (301) T 2pfz_A 21 QFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKP 100 (301) T ss_dssp HHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSCCSHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH T ss_conf 99999998759919999966986788699999997698771000224645417540366357676876889998630489 Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHH Q ss_conf --------------------222221112222111112334320231010122332013454213368557777554432 Q gi|254781112|r 129 --------------------RVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKR 188 (274) Q Consensus 129 --------------------~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~gr 188 (274) ...+.. ...+++++||+|++|.+. |.....+++..+...+..+ ..+.+.+|.+|. T Consensus 101 ~~~~~~~~~~~~~L~~~~~~~~~~~~---~~pi~~~~DlkG~kiR~~-~~~~~~~~~~~Ga~pv~~~-~~ev~~aLq~G~ 175 (301) T 2pfz_A 101 FLEKKLASQGMMLLYSVAWPPQGIFA---NRDIKQVSDMKGLKWRAY-SPVTAKIAELVGAQPVTVQ-QAELAQAMATGV 175 (301) T ss_dssp HHHHHHHTTTEEEEEEEECCCCEEEE---SSCCSSGGGGTTCEEEES-SHHHHHHHHHHTCEEEECC-GGGHHHHHHTTS T ss_pred HHHHHHHHCCEEEEEECCCCCEEEEC---CCCCCCHHHHCCCEEEEC-CHHHHHHHHHCCCCCCCCC-CHHHHHHHHHCC T ss_conf 99987642325798752776222242---889999588679858716-8249999998188744565-406899998253 Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHHH Q ss_conf 10036655899999984587667326236776877079998189-----98999999999999997 Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILCAIHL 249 (274) Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~~l~~ 249 (274) +|+...+....... .... ................+.++++ +++.+..|.++..+..+ T Consensus 176 vDg~~~~~~~~~~~--~~~e--~~~~~~~~~~~~~~~~~~~n~~~~~~L~~~~q~~i~~a~~~~~~ 237 (301) T 2pfz_A 176 IDSYMSSGSTGFDT--KTYE--YIKKFYDTEAWLPKNAVLVNKKAFDALDPATQQALKKAGAQAEE 237 (301) T ss_dssp CSEEEECHHHHHHT--TGGG--TCCEEECCCCCCCEEEEEEEHHHHHTSCHHHHHHHHHHHHHHHH T ss_pred CHHHCCCHHHHHHC--CCCE--EEEEEEECCCCCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 10200570444311--5614--42048735874641443506999963999999999999999999 No 46 >3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, membrane, transport protein; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3} Probab=97.66 E-value=0.00018 Score=45.97 Aligned_cols=193 Identities=10% Similarity=0.104 Sum_probs=107.7 Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEE-EEEEHHHHHHHCCCCCCCCC----CCHHHHHHHHHCCCCCCCH-HCC Q ss_conf 88589589996289987248704699848898-85216789976299855566----8988988643103221100-003 Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGF-DIDLIKEVAHRLNLKVEFFE----TAVSGLITGLDTNRYDVLV-NVA 110 (274) Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~-~~dl~~~i~~~lg~~~~~~~----~~~~~~~~~l~~g~~D~~~-~~~ 110 (274) .+.+.++|+++. +|| |.+.|. ..++.+.|.++.+-++++.+ .+...+++.++.|.+|+.. +.+ T Consensus 11 ~~~~~t~~~a~~--~~~---------~~~~~~~~~~fa~~Vee~t~G~I~i~p~g~Lg~~~e~~~~v~~G~id~~~~~~~ 79 (326) T 3fxb_A 11 IEGRDTWRYAFE--EAM---------TDVQGVYAQKFKEEIEANSDHEIQLFPYGTLGESADIMEQTQDGILQFVDQSPG 79 (326) T ss_dssp ----CCCEEECS--SCT---------TSHHHHHHHHHHHHHHHSSSCCCEEECTTSSCSHHHHHHHHHHTSCSEEECCHH T ss_pred HCCCCEEEEECC--CCC---------CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCC T ss_conf 162557999678--999---------987899999999999976598799987983688799999997698528975140 Q ss_pred CCHHHHHH-HCCCCCCCCCC---------------------------CCCCC--------CCCCCCCCCCCCCCCCCEEE Q ss_conf 67567542-00233322222---------------------------22221--------11222211111233432023 Q gi|254781112|r 111 ITPERQKK-YDFSIPYIAHR---------------------------VLLVV--------RSDQQDIRSFKDLTDKTVAQ 154 (274) Q Consensus 111 ~t~eR~~~-~~fs~p~~~~~---------------------------~~~~~--------~~~~~~~~~~~dL~g~~V~~ 154 (274) +.+..... -.|+.||...+ ..++. -.....+++++||+|++|.+ T Consensus 80 ~~~~~~p~~~i~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~g~~~~~s~kpi~s~~DlkG~kiR~ 159 (326) T 3fxb_A 80 FTGSLIPEAQVFFVPYLLPTDQDHLARFFKESKAINDMFKPLYADQGLELLNMFPEGEVAMTTKTPVTTCSDLDEVKFRV 159 (326) T ss_dssp HHTTTSGGGGGGGSTTCSCSCHHHHHHHHHHCHHHHTTSHHHHHTTTEEEEEEEEEEEEEEEESSCCSSGGGSTTCEEEE T ss_pred HHCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCHHHHCCCCEEC T ss_conf 01224614665307645773099999985136999999999988619714322103624664698999979976871200 Q ss_pred ECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-- Q ss_conf 101012233201345421336855777755443210036655899999984587667326236776877079998189-- Q gi|254781112|r 155 ILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-- 232 (274) Q Consensus 155 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-- 232 (274) ..+.....+++..+...+..+ ..+...+|.+|.+|+........ ....-.... ..+ ...........+.++++ T Consensus 160 ~~s~~~~~~~~~~Ga~pv~i~-~~Ev~~aLq~G~vDg~~~~~~~~-~~~~~~ev~-~y~--t~~~~~~~~~~~~~n~~~w 234 (326) T 3fxb_A 160 MTNPLLVESYKAFGATPTPLP-WGEVYGGLQTNVIQGQENPTFFL-YSTKIYEVT-DYI--TYAGHNNFTTAVMANKDFY 234 (326) T ss_dssp CSCHHHHHHHHHHTSEEEECC-GGGHHHHHHTTSCCEEEEEHHHH-HHTTGGGSC-SEE--EECCCCEEEEEEEEEHHHH T ss_pred CCCCHHHHHHHHCCCCCCCCC-CCCHHHHHHCCCCCEEECCCHHH-CCCCCCCCC-CEE--EECCCCCCCEEEEEEHHHH T ss_conf 486068999997599752565-10044798668866132261221-243432303-458--7346423200147628987 Q ss_pred ---CHHHHHHHHHHHH Q ss_conf ---9899999999999 Q gi|254781112|r 233 ---NNKLTRSINEILC 245 (274) Q Consensus 233 ---~~~L~~~in~~l~ 245 (274) +++.++.|.++.. T Consensus 235 ~~L~~e~q~~l~~a~~ 250 (326) T 3fxb_A 235 DGLSAEDQQLVQNAAL 250 (326) T ss_dssp HHSCHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHH T ss_conf 4089999999999999 No 47 >3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus} Probab=97.61 E-value=0.00012 Score=47.14 Aligned_cols=202 Identities=11% Similarity=0.028 Sum_probs=102.8 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH-HC-CCCH-- Q ss_conf 58958999628998724870469984889885216789976299855566-8988988643103221100-00-3675-- Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV-NV-AITP-- 113 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~-~~-~~t~-- 113 (274) ++.+||||..+. |.. .+ + .-..+.++++.|+++|++. .++..+..+|.+|++|+.. +. .+.. T Consensus 4 ~~~~irvG~~~~--~~~--------~~--~-~~~~k~~~e~~Gl~Ve~~~f~~g~~~~~Al~~G~iD~~~~g~~~~~~~~ 70 (237) T 3k2d_A 4 DTSKVKVGVMAG--AEA--------QV--A-EVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQ 70 (237) T ss_dssp CCCCEEEEEETT--HHH--------HH--H-HHHHHHHHHHHCCCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHHH T ss_pred CCCEEEEEEECC--CHH--------HH--H-HHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHH T ss_conf 887389996079--859--------99--9-9997778986698899998088256899997699777875457899864 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHH-----CCCCC-------------C---- Q ss_conf 6754200233322222222211122221111123343202310101223320-----13454-------------2---- Q gi|254781112|r 114 ERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAK-----ELKSH-------------L---- 171 (274) Q Consensus 114 eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~-----~~~~~-------------~---- 171 (274) .+...+.+..--......+.++.+. ..+..++++|++|++..++....++. ..... + T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kGk~ia~~~~~s~~~~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~~ 149 (237) T 3k2d_A 71 VEDRDYKLTIAGNTFVYPIAGYSKQ-VKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENP 149 (237) T ss_dssp HHHHCCCEEEEEECCCCCCEEECSS-CSCSTTCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCSSCCGGGEEECT T ss_pred HCCCCCEEEEEECCCCCEEEEECCC-CCCHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC T ss_conf 1058950799842554406998378-765546417987999558844999999999849974465544466502055453 Q ss_pred --EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHH Q ss_conf --1336855777755443210036655899999984587667326236776877079998189--989999999999999 Q gi|254781112|r 172 --VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILCAI 247 (274) Q Consensus 172 --~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~~l 247 (274) ............+..+++|+.+......... ...+.... +. ......+....++++++ |++....+-+++ T Consensus 150 ~~~~~~~~~~~~~a~~~~~~da~~~~~p~~~~a-~~~~~~~~-i~-~~~~~~~~~~~~v~r~~~~n~e~v~k~v~A~--- 223 (237) T 3k2d_A 150 KNITIMELDAAQLPRSLDDVALSIINTTYASSI-NLTPEKDG-VF-VEDKESPYVNLIVARQDNVQNENVQNFVKAY--- 223 (237) T ss_dssp TCCEEEEECGGGHHHHTTTSSEEEECHHHHGGG-TCCHHHHC-SE-ECCSSSSCCEEEEEETTTTTSHHHHHHHHHH--- T ss_pred CCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHH-CCCCCCCE-EE-ECCCCCCEEEEEEECCCCCCCHHHHHHHHHH--- T ss_conf 322433331667799752476369664288872-05876555-76-4588987369999865001989999999997--- Q ss_pred HHCCHHHHHHHHHC Q ss_conf 97985999998767 Q gi|254781112|r 248 HLDGTYKKIFDRYF 261 (274) Q Consensus 248 ~~~G~~~~I~~kw~ 261 (274) + +-+..+.+++.| T Consensus 224 ~-~~ev~~~i~e~~ 236 (237) T 3k2d_A 224 Q-TEEVYTAAKEIF 236 (237) T ss_dssp T-SHHHHHHHHHHT T ss_pred C-CHHHHHHHHHHC T ss_conf 8-999999999860 No 48 >3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic binding protein, trap, sugar transport, transport, transport protein; HET: SLB; 1.40A {Haemophilus influenzae} PDB: 2v4c_A* 2cey_A 2cex_A Probab=97.52 E-value=0.00093 Score=41.58 Aligned_cols=171 Identities=12% Similarity=0.088 Sum_probs=100.3 Q ss_pred EEHHHHHHHCCC--CCCCCC----CCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHH-CCCCCCCCC-------------- Q ss_conf 216789976299--855566----8988988643103221100-003675675420-023332222-------------- Q gi|254781112|r 71 DLIKEVAHRLNL--KVEFFE----TAVSGLITGLDTNRYDVLV-NVAITPERQKKY-DFSIPYIAH-------------- 128 (274) Q Consensus 71 dl~~~i~~~lg~--~~~~~~----~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~-~fs~p~~~~-------------- 128 (274) +.++.|.++.+= ++++.+ .+...+++.++.|.+|+.. +.++.+.+...+ .|..|+... T Consensus 23 ~fa~~V~e~t~G~v~v~v~~~g~Lg~~~e~~~av~~G~vd~~~~~~~~~~~~~p~~~~~~lP~~~~~~~~~~~~~~~~~~ 102 (310) T 3b50_A 23 MFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFALPYVISNYNVAQKALFDTEF 102 (310) T ss_dssp HHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGSTTTSCSHHHHHHHHHSSHH T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHH T ss_conf 99999999769949999966987488799999997799578975333324458034421576567987988888751188 Q ss_pred ----------------------CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHH Q ss_conf ----------------------2222211122221111123343202310101223320134542133685577775544 Q gi|254781112|r 129 ----------------------RVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLS 186 (274) Q Consensus 129 ----------------------~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 186 (274) ....+.. ...+.+++||+|++|.+..+.....+++..+...+..+ ..+.+..|.+ T Consensus 103 ~~~~~~~~~~~~~v~~l~~~~~g~~~~~~--~~pi~s~~DlkG~kiRv~~~~~~~~~~~~lGa~pv~~~-~~evy~aLq~ 179 (310) T 3b50_A 103 GKDLIKKMDKDLGVTLLSQAYNGTRQTTS--NRAINSIADMKGLKLRVPNAATNLAYAKYVGASPTPMA-FSEVYLALQT 179 (310) T ss_dssp HHHHHHHHHHHHCEEEEEEEEEEEEEEEE--SSCCCSGGGGTTCEEEECSCHHHHHHHHHTTCEEEECC-GGGHHHHHHT T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCCCC--CCCCCCHHHHCCCEEECCCCCHHHHHHHHCCCEEEEEC-CCCHHHHHHC T ss_conf 99999999875693687631576211467--98999968967884643686054679997397536735-6415689875 Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHH Q ss_conf 3210036655899999984587667326236776877079998189-----9899999999999999 Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILCAIH 248 (274) Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~~l~ 248 (274) |.+|++..+......+ .-... .. .............+.++++ +++.+..+..+..+.. T Consensus 180 G~vDg~~~~~~~~~~~-~~~ev-~~--y~~~~~~~~~~~~~~~n~~~w~~Lp~~~q~~i~~a~~~~~ 242 (310) T 3b50_A 180 NAVDGQENPLAAVQAQ-KFYEV-QK--FLAMTNHILNDQLYLVSNETYKELPEDLQKVVKDAAENAA 242 (310) T ss_dssp TSSSEEEEEHHHHHHT-TGGGS-CS--EEECCCCCEEEEEEEEEHHHHTTSCHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHC-CCEEE-EE--EEECCCCCCEEHHEEECHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 9865332761001203-31255-46--7632775210001013089886488999999999999999 No 49 >2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A Probab=97.44 E-value=0.00047 Score=43.39 Aligned_cols=104 Identities=12% Similarity=-0.035 Sum_probs=67.4 Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCC Q ss_conf 21111123343202310101223320134542133685577775544321003665589999998458766732623677 Q gi|254781112|r 140 DIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRM 219 (274) Q Consensus 140 ~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274) .+++++||+|++|.+..+....++++..+...+..+ ..+.+.+|.+|.+|++........ .. +....... ..... T Consensus 131 pi~s~~DLkG~kiR~~~~~~~~~~~~~lGa~pv~~p-~~evy~aLq~G~iDg~~~~~~~~~-~~-~~~ev~~y--~~~~~ 205 (316) T 2vpn_A 131 PITSPEDFDNKKIRTMTNPLLAETYKAFGATPTPLP-WGEVYGGLQTGIIDGQENPIFWIE-SG-GLYEVSPN--LTFTS 205 (316) T ss_dssp CCCSGGGGTTCEEEECSCHHHHHHHHHHTCEEEECC-GGGHHHHHHHTSCSEEEEEHHHHH-HT-TGGGTCCE--EEECC T ss_pred CCCCHHHHCCCEEEECCCCHHHHHHHHCCCCCCCCC-CCCCCHHHHCCCEEEEECCCCCCC-CC-CEEEEECC--EECCC T ss_conf 889978976880762488058999997598432453-001230653586104752521001-22-00111044--13143 Q ss_pred CCCCCEEEEEECC-----CHHHHHHHHHHHHHHH Q ss_conf 6877079998189-----9899999999999999 Q gi|254781112|r 220 KDNSAVAFMMRKG-----NNKLTRSINEILCAIH 248 (274) Q Consensus 220 ~~~~~~~~~~~k~-----~~~L~~~in~~l~~l~ 248 (274) .......+.++++ +++++..+.++..+.. T Consensus 206 ~~~~~~~~~~n~~~w~~L~~~~q~~l~~a~~~~~ 239 (316) T 2vpn_A 206 HGWFTTAMMANQDFYEGLSEEDQQLVQDAADAAY 239 (316) T ss_dssp CCEEEEEEEEEHHHHHHSCHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 3343368774399997399999999999999999 No 50 >2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Probab=97.34 E-value=0.00092 Score=41.62 Aligned_cols=211 Identities=11% Similarity=0.041 Sum_probs=105.9 Q ss_pred HCCCEEEEECC--CCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCC-CCCCCC-CCHHHHHHHH----HCCCCCCCHH-- Q ss_conf 58958999628--998724870469984889885216789976299-855566-8988988643----1032211000-- Q gi|254781112|r 39 DQSALRVGTDG--IYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNL-KVEFFE-TAVSGLITGL----DTNRYDVLVN-- 108 (274) Q Consensus 39 ~~~~l~v~~~~--~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~-~~~~~~-~~~~~~~~~l----~~g~~D~~~~-- 108 (274) ++.+||||.-+ +..|+. +---+-.+++.|+ +++++. ..|....+.| .+|++|+... T Consensus 31 E~~~lriGyiPl~d~APl~--------------VA~ekGfF~~~GL~dVel~~~~s~~~~~d~l~~g~a~G~lD~a~~~~ 96 (417) T 2g29_A 31 EVTTAKLGFIALTDAAPLI--------------IAKEKGFYAKYGMPDVEVLKQASWGTTRDNLVLGSASGGIDGAHILT 96 (417) T ss_dssp SCSCCEEEECSSGGGHHHH--------------HHHHTTHHHHTTCTTCEEEECSCHHHHHHHHHHCGGGTSCSEEEEET T ss_pred CCCEEEEEEEECCCHHHHH--------------HHHHCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEECCCC T ss_conf 6743899976650539999--------------99977958775997468996578277999999764246614000251 Q ss_pred -CCCCH-----HHHHHHCC--CCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCEEEECCC-HHH----HHHH Q ss_conf -03675-----67542002--33322222222211----------12222111112334320231010-122----3320 Q gi|254781112|r 109 -VAITP-----ERQKKYDF--SIPYIAHRVLLVVR----------SDQQDIRSFKDLTDKTVAQILGT-DLS----RFAK 165 (274) Q Consensus 109 -~~~t~-----eR~~~~~f--s~p~~~~~~~~~~~----------~~~~~~~~~~dL~g~~V~~~~g~-~~~----~~l~ 165 (274) +.... .+.....+ ..........+.+. .....+++++||+|+|||+.... ... .+++ T Consensus 97 ~~~~a~~lg~~~~~~~~~~~~~~~~~~~g~~I~~s~~~~~~~~~~~~~~~i~s~~dLkGk~igv~~~~s~~~~~lr~~L~ 176 (417) T 2g29_A 97 PMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNYKDLKVGTDAAPLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLA 176 (417) T ss_dssp HHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGGGGGCCCSCCTTHHHHHHTSSSCEEEESSTTSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 16899998776437898889998736687479983232000344565432109888399989997898649999999999 Q ss_pred CCCCC----C-EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC-CEEEEEEC----CCHH Q ss_conf 13454----2-1336855777755443210036655899999984587667326236776877-07999818----9989 Q gi|254781112|r 166 ELKSH----L-VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNS-AVAFMMRK----GNNK 235 (274) Q Consensus 166 ~~~~~----~-~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k----~~~~ 235 (274) +.+.+ + +..-.+.+....|.+|++|+++..+.-......+ ... ............. ...+++++ +||+ T Consensus 177 ~~Gldp~~DV~iv~~~p~~~~~aL~~G~iDa~~~~eP~~~~a~~~-g~g-~~~~~~~di~~~~p~~vl~~~~~~~~~nPe 254 (417) T 2g29_A 177 AGGMEPGKDFSTIVVPPAQMVANVKVNAMESFCVGEPWPLQTVNQ-GVG-YQALTTGQLWKDHPEKAFGMRADWVDQNPK 254 (417) T ss_dssp HTTCCBTTTBEEEECCGGGHHHHHHTTSCSEEEEETTHHHHHHHH-TSC-EEEEEGGGTBTTCBCEEEEEEHHHHHHCHH T ss_pred HCCCCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHC-CCC-EEEEECHHHCCCCCCEEEEECHHHHHHCHH T ss_conf 669986664389855779999999668703899544499999864-885-898510463289863699964898853989 Q ss_pred HHHHHHHHHHHHH---HC----CHHHHHHH--HHCCCCC Q ss_conf 9999999999999---79----85999998--7678887 Q gi|254781112|r 236 LTRSINEILCAIH---LD----GTYKKIFD--RYFDKNI 265 (274) Q Consensus 236 L~~~in~~l~~l~---~~----G~~~~I~~--kw~g~d~ 265 (274) ....+-+++.+-. ++ -+..+|+. +|++.+. T Consensus 255 ~v~afv~Al~~A~~w~~~~~n~~eaa~ila~~~yl~~p~ 293 (417) T 2g29_A 255 AAKALLMAVMEAQQWCDQAENKEEMCQILSKREWFKVPF 293 (417) T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHSTTTTCCCG T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCH T ss_conf 999999999999999837659999999856503279599 No 51 >2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* Probab=96.89 E-value=0.0017 Score=39.90 Aligned_cols=181 Identities=15% Similarity=0.235 Sum_probs=98.1 Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCC--CHH-HHH---HHCC--CCCCCCCCCCCCCCCCCC-CC Q ss_conf 21678997629985556689889886431032211000036--756-754---2002--333222222222111222-21 Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAI--TPE-RQK---KYDF--SIPYIAHRVLLVVRSDQQ-DI 141 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~--t~e-R~~---~~~f--s~p~~~~~~~~~~~~~~~-~~ 141 (274) +|++..-++.|++|+++..+.......+++| .|++...+. ..+ ++. .+.. ..++.....+++++++.+ .+ T Consensus 17 ~l~~~Fek~tGi~V~~~~~~s~~l~~~i~~~-aDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~ 95 (237) T 2hxw_A 17 DIANKYSEKTGVKVNVNFGPQATWFEKAKKD-ADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKI 95 (237) T ss_dssp HHHHHHHHHHCCCEEEEESSHHHHHHHHHHH-CSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEEEESTTCTTCC T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCCCC T ss_conf 9999998801975999977829999997659-999998460478999886104677772799994329999979997676 Q ss_pred CCCCCCCCC--CEEEECCC------H---HHHHH---------HCCC-CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 111123343--20231010------1---22332---------0134-54213368557777554432100366558999 Q gi|254781112|r 142 RSFKDLTDK--TVAQILGT------D---LSRFA---------KELK-SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFF 200 (274) Q Consensus 142 ~~~~dL~g~--~V~~~~g~------~---~~~~l---------~~~~-~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~ 200 (274) ++++||... ++.+..+. . +.... .... ..+....+..+...++.+|++|+.+..... T Consensus 96 ~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~d~~i~~~~~-- 173 (237) T 2hxw_A 96 KGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDW-- 173 (237) T ss_dssp CSHHHHHHSCCCEEECCCTTSSCCTTTTHHHHHHHTTCCHHHHHHHHHTEEEECCCCTTC--CTTTTTCSEEEEEHHH-- T ss_pred CCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCHHHHHHHHHHCCCEEEEEEHHH-- T ss_conf 523566420310665136887322279999998622220889997435705865888999999970777099874454-- Q ss_pred HHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 999845876673262367768770799981899899999999999999798599999876 Q gi|254781112|r 201 NFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274) ....+.....+..........++++.-...+++.... +-+...|.+-++|++|| T Consensus 174 --a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~A~~----Fi~fl~S~e~q~i~~~~ 227 (237) T 2hxw_A 174 --SKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQD----FIAYLSSKEAKEIFKKY 227 (237) T ss_dssp --HHHSTTSSEEEECCTTTCCEEEEEEEECTTCCHHHHH----HHHHTTSHHHHHHHHHT T ss_pred --HHCCCCCEEEEECCCCCCEEEEEEEECCCCCHHHHHH----HHHHHCCHHHHHHHHHC T ss_conf --5326660289966998525877999958999499999----99997899999999985 No 52 >2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Probab=96.88 E-value=0.006 Score=36.58 Aligned_cols=135 Identities=9% Similarity=0.055 Sum_probs=85.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--------CCEEEE-CCCHHHH----HHHC--CCCCCEEECCHHHHHHHHHHHH Q ss_conf 32222222221112222111112334--------320231-0101223----3201--3454213368557777554432 Q gi|254781112|r 124 PYIAHRVLLVVRSDQQDIRSFKDLTD--------KTVAQI-LGTDLSR----FAKE--LKSHLVFSHNFEQSLQLLLSKR 188 (274) Q Consensus 124 p~~~~~~~~~~~~~~~~~~~~~dL~g--------~~V~~~-~g~~~~~----~l~~--~~~~~~~~~~~~~~~~~l~~gr 188 (274) .....+.+++++++++ +++++||.. .++|.. .|+.... +.+. .+.+.+.|....+.+.+|..|+ T Consensus 98 ~~~~~~~~lvv~~ds~-~~t~~el~~~ak~~p~~~~~g~~g~g~~~~~~~~~~~~~~g~~~~~Vpy~G~~~~~~all~G~ 176 (301) T 2qpq_A 98 NVAYVPSVFVVPAGSK-YKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQ 176 (301) T ss_dssp EEEEEEEEEEEETTCS-CCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTS T ss_pred EECCCCEEEEECCCCC-CCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCE T ss_conf 3135656999737777-440267777643103234251378987999999999861456623661178588888875584 Q ss_pred HHCCCCCHHHHHHHHHHCCCCCC------------CEEECC-----CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHC Q ss_conf 10036655899999984587667------------326236-----776877079998189-989999999999999979 Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGN------------LFKIAD-----RMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLD 250 (274) Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~ 250 (274) +|+.+........++..-..... .++... ........++..+++ .++.++.+.+++.++.+| T Consensus 177 vd~~~~~~~~~~~~i~~G~l~~La~~~~~R~~~~PdvPT~~E~G~~~~~~~~~~g~~ap~gtp~~~~~~l~~a~~~~~~~ 256 (301) T 2qpq_A 177 IGLAVVTASSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQR 256 (301) T ss_dssp SSCEEEEHHHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTC T ss_pred EEEEECCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC T ss_conf 45553467876644037856899996787686679999817858887458763212306999999999999999999729 Q ss_pred CHHHHHHHH Q ss_conf 859999987 Q gi|254781112|r 251 GTYKKIFDR 259 (274) Q Consensus 251 G~~~~I~~k 259 (274) .++.+..++ T Consensus 257 ~~~~~~~~~ 265 (301) T 2qpq_A 257 DDVQKKLAD 265 (301) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999997 No 53 >2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1 Probab=96.71 E-value=0.0012 Score=40.99 Aligned_cols=181 Identities=9% Similarity=-0.063 Sum_probs=77.1 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEECC Q ss_conf 998555668988988643103221100-0036756754200233322--2222222111222211111233432023101 Q gi|254781112|r 81 NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKKYDFSIPYI--AHRVLLVVRSDQQDIRSFKDLTDKTVAQILG 157 (274) Q Consensus 81 g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~~fs~p~~--~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g 157 (274) +.+++++..++..+.++|.+|++|+.. +...-......+. ..+.. ......++... ...++++||+||+||+..+ T Consensus 32 ~~~~~~~~~~p~~l~~al~sG~iDi~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~-~~~~~~~dLkGkkVav~~~ 109 (291) T 2nxo_A 32 LLDFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLV-AFPDIAVGCDGPVMSCVI-VSQVPLDRLDGARVALGST 109 (291) T ss_dssp GGGCEEEEECHHHHHHHHHTTSCSEEEEEHHHHHHTGGGEE-EEEEEEEEESSCCSSEEE-EESSCTTSCSSSEEEEETT T ss_pred CCCEEEEECCHHHHHHHHHCCCCCEEECCHHHHHHHCCCCE-EEEEEEECCCCCCEEEEE-ECCCCHHHHCCCEEEEECC T ss_conf 87669986899999999986998899642999986147544-756654504688557897-3678978968985998089 Q ss_pred CHHHHH-----HHCC-CCCCEEEC-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC-----CCCCCCE Q ss_conf 012233-----2013-45421336-8557777554432100366558999999845876673262367-----7687707 Q gi|254781112|r 158 TDLSRF-----AKEL-KSHLVFSH-NFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR-----MKDNSAV 225 (274) Q Consensus 158 ~~~~~~-----l~~~-~~~~~~~~-~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 225 (274) +....+ +++. +..+..+. .......+...+..+++. +....................... ....... T Consensus 110 ss~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~i~d~~~~w~~~~~~~~~~~ 188 (291) T 2nxo_A 110 SRTSVRLAQLLLSERFGVQPDYYTCPPDLSLMMQEADAAVLIG-DAALRANMIDGPRYGLDVHDLGALWKEWTGLPFVFA 188 (291) T ss_dssp CSHHHHHHHHHHHHTSCCCCEEEEECCCSSCC-----CCEEEH-HHHHHHHHTHHHHTTCEEEEHHHHHHHHHSCCEEEE T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCEEEEE-CCCHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEE T ss_conf 8599999999998559998079867873688973689617983-442038987405786899884786745228986300 Q ss_pred EEEEEC----CCHH----HHHHHHHHHHHHHHCC-HHHHHHHHHCCCC Q ss_conf 999818----9989----9999999999999798-5999998767888 Q gi|254781112|r 226 AFMMRK----GNNK----LTRSINEILCAIHLDG-TYKKIFDRYFDKN 264 (274) Q Consensus 226 ~~~~~k----~~~~----L~~~in~~l~~l~~~G-~~~~I~~kw~g~d 264 (274) .++++. .+++ +...+.++.+-+.++- +..+++.+++|-+ T Consensus 189 ~~~~~~~~~~~~p~~v~~~~~al~~a~~~~~~~p~ea~~~~a~~~gi~ 236 (291) T 2nxo_A 189 VWAARRDYAEREPVITRKVHEAFLASRNLSLEEVEKVAEQAARWEAFD 236 (291) T ss_dssp EEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSSSC T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC T ss_conf 011133322227899999999999999988759999999998870979 No 54 >2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Probab=96.66 E-value=0.011 Score=34.84 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=104.7 Q ss_pred HHHHHHCCCCCCCCCCCHHH---HHHHHHCCCCCC---C-HH---CCCCHH-HHHHH------CCC--CCCCCCCCCCCC Q ss_conf 78997629985556689889---886431032211---0-00---036756-75420------023--332222222221 Q gi|254781112|r 74 KEVAHRLNLKVEFFETAVSG---LITGLDTNRYDV---L-VN---VAITPE-RQKKY------DFS--IPYIAHRVLLVV 134 (274) Q Consensus 74 ~~i~~~lg~~~~~~~~~~~~---~~~~l~~g~~D~---~-~~---~~~t~e-R~~~~------~fs--~p~~~~~~~~~~ 134 (274) +.+.+.+|.++.++..|=.+ ....+.+..-|. + .. ....+- +.+.+ +|. ..+...+.++++ T Consensus 42 ~~l~k~~g~~v~V~N~pGagG~~g~~~~~~~~~Dg~ti~~~~~~~~~~~~~~~~~~~~~d~~~d~~~v~~~~~~~~v~~v 121 (314) T 2dvz_A 42 QRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAV 121 (314) T ss_dssp HHHHHHHTSCEEEEECCCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCTTTSEEEEEEEEEECEEEEE T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCEEEEC T ss_conf 99999869987999669827899999998569999847761240544334541357898768875554202204303431 Q ss_pred CCCCCCCCCCCCCC--------CCCEEEE-CCCHH----HHHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 11222211111233--------4320231-01012----2332013--45421336855777755443210036655899 Q gi|254781112|r 135 RSDQQDIRSFKDLT--------DKTVAQI-LGTDL----SRFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPF 199 (274) Q Consensus 135 ~~~~~~~~~~~dL~--------g~~V~~~-~g~~~----~~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~ 199 (274) ++++ .+++++||. ..++|.. .|+.. ..+.+.. +.+.+.|.+..+++.+|..|++|+.+...... T Consensus 122 ~~~s-~~~t~~e~i~~ak~~p~~l~~g~~~~gs~~~~~~~~l~~~~G~~~~~Vpy~g~~~~~~all~G~vd~~~~~~~~~ 200 (314) T 2dvz_A 122 NPKF-PAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSS 200 (314) T ss_dssp CTTS-SCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEHHHH T ss_pred CCCC-CCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEEECCCHHH T ss_conf 6777-756789999998639984576204664224567999999859975994048842446888679478985132111 Q ss_pred HHHHHHCCCCC---------C---CEEECCC-----CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 99998458766---------7---3262367-----76877079998189-9899999999999999798599999876 Q gi|254781112|r 200 FNFLERRPHDG---------N---LFKIADR-----MKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274) Q Consensus 200 ~~~~~~~~~~~---------~---~~~~~~~-----~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274) ..+...-.... . .++...+ ......+++..+++ +++.++.+.+++.++.+|.++++..++- T Consensus 201 ~~~v~~G~lk~lav~~~~r~~~~pdvPT~~E~g~~~~~~~~~~gi~ap~gtp~e~v~~l~~a~~~~~~~~e~~~~~~~~ 279 (314) T 2dvz_A 201 MPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314) T ss_dssp HHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHC T ss_conf 1133079713677627876765689997176454333221000003689999999999999999997099999999977 No 55 >2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic solute-binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A Probab=96.55 E-value=0.0047 Score=37.22 Aligned_cols=211 Identities=11% Similarity=0.085 Sum_probs=105.4 Q ss_pred HCCCEEEEECC--CCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCC-CCCCC-CCHHHHHHHHHCCC----CCCCH--- Q ss_conf 58958999628--9987248704699848898852167899762998-55566-89889886431032----21100--- Q gi|254781112|r 39 DQSALRVGTDG--IYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLK-VEFFE-TAVSGLITGLDTNR----YDVLV--- 107 (274) Q Consensus 39 ~~~~l~v~~~~--~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~-~~~~~-~~~~~~~~~l~~g~----~D~~~--- 107 (274) ++.+|+||.-+ +..|+. + -.-+-++++.|++ ++++. ..|....+.|..|. +|+.. T Consensus 34 Ek~~l~iG~iP~~d~aPl~-V-------------A~ekGfF~~~GLd~V~l~~~~s~a~~~d~l~~G~~dg~lD~a~~la 99 (429) T 2i49_A 34 ETANIKLGYIPIVEAAPLI-I-------------AQEKGFFAKYGMTGVEVSKQANWASARDNVTIGSQGGGIDGGQWQM 99 (429) T ss_dssp SCSEEEEEECSSGGGHHHH-H-------------HHHTTHHHHTTCCEEEEEECSSHHHHHHHHHHTGGGTSCSEEEECT T ss_pred CCCEEEEEEEECHHHHHHH-H-------------HHHCCHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEECCC T ss_conf 7746999987744369999-9-------------9977948875997588995587799999998142257621564154 Q ss_pred HCCC--CH---HHHHHHCCCC--CCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCEEE--E-CCCHHHH-- Q ss_conf 0036--75---6754200233--3222222222-------------111222211111233432023--1-0101223-- Q gi|254781112|r 108 NVAI--TP---ERQKKYDFSI--PYIAHRVLLV-------------VRSDQQDIRSFKDLTDKTVAQ--I-LGTDLSR-- 162 (274) Q Consensus 108 ~~~~--t~---eR~~~~~fs~--p~~~~~~~~~-------------~~~~~~~~~~~~dL~g~~V~~--~-~g~~~~~-- 162 (274) ++.. +. .+........ ........+. .......++++.|++|+++++ . .++.... T Consensus 100 p~p~a~~~gl~~~~~~~p~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~i~~~~dl~Gk~~~i~~~~~~s~~~~~l 179 (429) T 2i49_A 100 PMPHLITEGIITNGNKVPMYVLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHTFPNVNQDFWI 179 (429) T ss_dssp THHHHHHTTTTTTTCCCCEEEEEECCBCCEEEEECGGGTTTTCSSCCGGGHHHHHTHHHHHSSCCEEEESSTTSHHHHHH T ss_pred CCHHHHHHHHHHCCCCCCEEEEHHHHCCCCEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCHHHHHH T ss_conf 30899887776237788957633230588617851212025744212450565531887259861026789985899999 Q ss_pred --HHHCCCCC----C-EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCC-CCEEEEEEC--- Q ss_conf --32013454----2-133685577775544321003665589999998458766732623677687-707999818--- Q gi|254781112|r 163 --FAKELKSH----L-VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDN-SAVAFMMRK--- 231 (274) Q Consensus 163 --~l~~~~~~----~-~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k--- 231 (274) ++++.+.+ + +..-.+.+....|.+|++|+++....-..... ..... ............ ....+++++ T Consensus 180 ~~~L~~~Gldp~~DV~iv~~~p~~~~~aL~~G~IDa~~v~eP~~~~a~-~~g~g-~~~~~~~di~~~~~~~vl~~~~~~~ 257 (429) T 2i49_A 180 RYWFAAGGVDPDTDIDLLAVPPAETVQGMRNGTMDAFSTGDPWPYRIV-TENIG-YMAGLTAQIWPYHPEEYLAIRADWV 257 (429) T ss_dssp HHHHHHTTCCTTTTSEEEECCHHHHHHHHHHTCCCEEEEETTHHHHHH-HTTSC-EEEEEHHHHSTTCCCCEEEEEHHHH T ss_pred HHHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHH-HCCCC-EEEECHHHHCCCCCCEEEEECHHHH T ss_conf 999996699876406987467889999996598457971644999999-61887-3651167746898652799639999 Q ss_pred -CCHHHHHHHHHHHHHHH---HC----CHHHHHHH--HHCCCCC Q ss_conf -99899999999999999---79----85999998--7678887 Q gi|254781112|r 232 -GNNKLTRSINEILCAIH---LD----GTYKKIFD--RYFDKNI 265 (274) Q Consensus 232 -~~~~L~~~in~~l~~l~---~~----G~~~~I~~--kw~g~d~ 265 (274) +||+....+-+++.+-. ++ -+..+|.. .|++.+. T Consensus 258 ~~nPe~v~a~l~Al~~A~~w~~~~~n~~e~a~ila~~~yl~~p~ 301 (429) T 2i49_A 258 DKNPKATKALLKGIMEAQQWIDDPKNRPEVVQIVSGRNYFNVPT 301 (429) T ss_dssp HHCHHHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHSTTTTCSCT T ss_pred HHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCH T ss_conf 76879999999999999999846889999999864635589599 No 56 >2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR structural genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli K12} PDB: 3hfu_A Probab=96.51 E-value=0.0059 Score=36.63 Aligned_cols=188 Identities=13% Similarity=0.180 Sum_probs=109.6 Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHH Q ss_conf 8589589996289987248704699848898852167899762-998555668988988643103221100003675675 Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQ 116 (274) Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~ 116 (274) ..+|+|+||+.+.+.. ++..+++....++. ++++++...+...+.+.+.+|++|+........ . T Consensus 27 ~~~g~l~Ig~~~~~~~-------------~~l~~~l~~f~~~~P~i~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~~--~ 91 (238) T 2hxr_A 27 LTRGSLRIAVTPTFTS-------------YFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVH--S 91 (238) T ss_dssp ----CEEEEECHHHHT-------------TTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCC--C T ss_pred CCCEEEEEEEEHHHHH-------------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHCCCCC--C T ss_conf 9842899995378999-------------999999999999889988997328879999999869830012025544--3 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEE-CCCHH----HHHHHCCCC---CCEEECCHHHHHHHH Q ss_conf 42002333222222222111222----2111112334320231-01012----233201345---421336855777755 Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQI-LGTDL----SRFAKELKS---HLVFSHNFEQSLQLL 184 (274) Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~~-~g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l 184 (274) ..+. ..++.....+++++++.+ ..-+++||++.++... .++.. +.+.++.+. ....+++......++ T Consensus 92 ~~~~-~~~l~~~~~~~~~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (238) T 2hxr_A 92 PELE-AIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELI 170 (238) T ss_dssp TTEE-EEEEEEEEEEEEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHH T ss_pred CCHH-HHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHH T ss_conf 1043-333455422321320046654035879998139689848998579999999997699875212368779999999 Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC---HHHHHHHHHHHHHHH Q ss_conf 4432100366558999999845876673262367768770799981899---899999999999999 Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN---NKLTRSINEILCAIH 248 (274) Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~~L~~~in~~l~~l~ 248 (274) .+|..=+ +.+.... .... ....+.+. ++.....+++..+++. +.....++.....+. T Consensus 171 ~~g~gi~-~~p~~~~----~~~~-~~~~~~~~-~~~~~~~~~li~~~~~~~s~~~~~fi~~~~e~~~ 230 (238) T 2hxr_A 171 RRTSLST-LLPAAIA----TQHD-GLKAISLA-PPLLERTAVLLRRKNSWQTAAAKAFLHMALDKCA 230 (238) T ss_dssp HHSSCBE-EEETHHH----HHCT-TEEEEEES-SCSCEEEEEEEEETTSCCCHHHHHHHHHHHHHHC T ss_pred HHCCEEE-EEHHHHH----HHCC-CCEEEECC-CCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 9399799-7029986----0378-93399788-9986249999998959789999999999999987 No 57 >1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 Probab=96.27 E-value=0.01 Score=35.11 Aligned_cols=186 Identities=15% Similarity=0.077 Sum_probs=87.8 Q ss_pred CCCEEEEECCCCCCE---EEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH--HCCCCHH Q ss_conf 895899962899872---48704699848898852167899762998555668988988643103221100--0036756 Q gi|254781112|r 40 QSALRVGTDGIYPPH---SFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV--NVAITPE 114 (274) Q Consensus 40 ~~~l~v~~~~~~pP~---~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~--~~~~t~e 114 (274) +.+||||..++ |. -|+-- .+|. . ..|++++++.-+.+.+-..+.+|++|+.. +..+-.- T Consensus 9 ~~~i~ig~sp~--~~d~~~f~al-~~g~------------~-~~~~~~e~~~~d~~~LN~~l~~G~lDv~~iSs~~y~~~ 72 (280) T 1zbm_A 9 SHKIRVAHTPD--ADDAFMFYAM-THGK------------V-DTWLEIEHVIEDIETLNRKAFNAEYEVTAISAHAYALL 72 (280) T ss_dssp TCEEEEEECSS--HHHHHHHHHH-HTTC------------S-CCSCEEEEEECCHHHHHHHGGGTCCSEEEEEHHHHTTS T ss_pred CCEEEEEECCC--CCHHHHHHHH-HCCC------------C-CCCCCCEEEECCHHHHHHHHHCCCCCEEEHHHHHHHHC T ss_conf 64179997799--9638887899-8399------------7-89986358647999999999869999971719999944 Q ss_pred HHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH-HHHHCC-CCCCEEECCHHHHHHHHHHHHHHC Q ss_conf 754200233-32222222221112222111112334320231010122-332013-454213368557777554432100 Q gi|254781112|r 115 RQKKYDFSI-PYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS-RFAKEL-KSHLVFSHNFEQSLQLLLSKRTDA 191 (274) Q Consensus 115 R~~~~~fs~-p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~-~~l~~~-~~~~~~~~~~~~~~~~l~~grvD~ 191 (274) .+++...+. .......+.++ ..++..+|+|++|++...++.. .+++-. +..........+....+..|++|+ T Consensus 73 ~~~y~lLp~~s~~~~g~~~~v-----~~~~~~~L~gk~ial~~~stTs~~Ll~ill~~~~~~~~~~~~~~~al~~g~~Da 147 (280) T 1zbm_A 73 DDKYRILSAGASVGDGYGPVV-----VAKSEISLDGKRIAVPGRYTTANLLLKLAVEDFEPVEMPFDRIIQAVLDEEVDA 147 (280) T ss_dssp TTTEEECSSCCEEESSCCCEE-----EESSCCCCTTCEEEESCTTSHHHHHHHHHCSSCEEEECCGGGHHHHHHTTSSSE T ss_pred CCCEEECCCEEEEECCCEEEE-----EECCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHCCCHHHCCCCCC T ss_conf 240668786388404761489-----967766778987985698719999999998516761368653350544488870 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEECC--CCCCCCCE---EEEEECC-CHHHHHHHHHHHHHHH Q ss_conf 36655899999984587667326236--77687707---9998189-9899999999999999 Q gi|254781112|r 192 TMIPDIPFFNFLERRPHDGNLFKIAD--RMKDNSAV---AFMMRKG-NNKLTRSINEILCAIH 248 (274) Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~k~-~~~L~~~in~~l~~l~ 248 (274) .+.-...+..+. .. .......... ......++ .++++++ +++....+.+++.+-. T Consensus 148 ~llIgd~al~~~-~~-~~~~v~DLge~W~~~tglP~vfa~~~vrr~~~~~~~~~~~~al~~s~ 208 (280) T 1zbm_A 148 GLLIHEGQITYA-DY-GLKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESI 208 (280) T ss_dssp EEECSGGGGTGG-GG-TCEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHH T ss_pred CEECCHHHHCCC-CC-CCCEEEEHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 315575884400-24-99089662667635779871657887503379999999999999999 No 58 >2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1 Probab=96.23 E-value=0.0024 Score=39.01 Aligned_cols=175 Identities=10% Similarity=0.153 Sum_probs=103.8 Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHH Q ss_conf 8589589996289987248704699848898852167899762-998555668988988643103221100003675675 Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQ 116 (274) Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~ 116 (274) ..+|+||||+.+.... .+..+++..+.++. ++++++...+.....+.|.+|++|++......+. . T Consensus 11 ~~~G~lrIg~~~~~a~-------------~~Lp~~l~~f~~~~P~i~l~i~~~~~~~l~~~L~~g~~D~ai~~~~~~~-~ 76 (228) T 2fyi_A 11 DTSGVLTIATTHTQAR-------------YSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSN-D 76 (228) T ss_dssp TCCEEEEEEECHHHHH-------------HTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTT-C T ss_pred CCCCEEEEEEEHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC-C T ss_conf 9971799997588999-------------9999999999998899489999676599999986688332333112356-8 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEC-CCH----HHHHHHCCCC--C-CEEECCHHHHHHHH Q ss_conf 420023332222222221112222----1111123343202310-101----2233201345--4-21336855777755 Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQIL-GTD----LSRFAKELKS--H-LVFSHNFEQSLQLL 184 (274) Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~-g~~----~~~~l~~~~~--~-~~~~~~~~~~~~~l 184 (274) ..+ -..|+.....++++.++.+. --+++||.+..+.... |+. ....+...+. + ...+++......++ T Consensus 77 ~~~-~~~~l~~~~~~~v~~~~~~~~~~~~i~~~dL~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (228) T 2fyi_A 77 PQL-VAFPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYV 155 (228) T ss_dssp TTE-EEEEEEEECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHHHH T ss_pred CCC-EEEEEEECCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH T ss_conf 653-3677320343011356420003444447887259721268998178889987650387775347847899999998 Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC-CCCCCCCEEEEEECCC Q ss_conf 443210036655899999984587667326236-7768770799981899 Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD-RMKDNSAVAFMMRKGN 233 (274) Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~ 233 (274) .+|..=+ +.+...+ ... .....+.+.. .+.....++++.+++. T Consensus 156 ~~g~gi~-~lp~~~~----~~~-~~~~lv~l~~~~~~~~~~~~l~~~~~~ 199 (228) T 2fyi_A 156 ALGLGIG-LVAEQSS----GEQ-EEENLIRLDTRHLFDANTVWLGLKRGQ 199 (228) T ss_dssp HHTSCEE-EEEGGGG----STT-CCTTEEEECCTTTSCCEEEEEEEETTC T ss_pred HCCCEEE-ECCHHHH----HHH-HCCCEEEEECCCCCCCEEEEEEEECCC T ss_conf 6599999-8639998----565-459989996877776408999998968 No 59 >2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A Probab=96.23 E-value=0.0031 Score=38.36 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=105.5 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCC-C-CHH-- Q ss_conf 589589996289987248704699848898852167899762998555668988988643103221100003-6-756-- Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVA-I-TPE-- 114 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~-~-t~e-- 114 (274) +.++|+||. .+|. . + =+..+|+..+.+++|++|+.++.+..-+..+|.+|++|+..... . +.+ T Consensus 5 ~~~~V~ig~-~~w~-----~----~---~~~a~i~~~vLe~~Gy~Ve~~~~~~~~~~~al~~GdID~~~e~W~p~~~~~~ 71 (298) T 2rin_A 5 SCGTVRFSD-VGWT-----D----I---TATTATATTILEALGYETDVKVLSVPVTYTSLKNKDIDVFLGNWMPTMEADI 71 (298) T ss_dssp CTTEEEEEC-CSCH-----H----H---HHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHTSCCEEEEEEETTTHHHH T ss_pred CCCCEEEEE-CCCC-----H----H---HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHH T ss_conf 489769974-6976-----6----9---9999999999998699248986870999999987998088404664001667 Q ss_pred ---HHH-HHCCCCC-CCCCCCCCCCCCC--CCCCCCCCCCCC-------CCEEEECCCHHH----HHHHCC--CCC-C-E Q ss_conf ---754-2002333-2222222221112--222111112334-------320231010122----332013--454-2-1 Q gi|254781112|r 115 ---RQK-KYDFSIP-YIAHRVLLVVRSD--QQDIRSFKDLTD-------KTVAQILGTDLS----RFAKEL--KSH-L-V 172 (274) Q Consensus 115 ---R~~-~~~fs~p-~~~~~~~~~~~~~--~~~~~~~~dL~g-------~~V~~~~g~~~~----~~l~~~--~~~-~-~ 172 (274) .+. .+..-.+ +......+.++.. ...+++++||+. ..+|...|.... ...+.. +.. . . T Consensus 72 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~a~~~i~sisDL~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298) T 2rin_A 72 APYREDKSVETVRENLAGAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEV 151 (298) T ss_dssp HHHHTTTSEEEEEEEEEEEEEEEEEEHHHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEE T ss_pred HHHHHHCCCEECCCCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCEE T ss_conf 99886145311144456861588753044442767477776535523774672256422243314566650268876542 Q ss_pred EECCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCC------CCCEEEEEECC----CHHHHH Q ss_conf 336855----7777554432100366558999999845876673262367768------77079998189----989999 Q gi|254781112|r 173 FSHNFE----QSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKD------NSAVAFMMRKG----NNKLTR 238 (274) Q Consensus 173 ~~~~~~----~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~k~----~~~L~~ 238 (274) ...+.. +...++.+|+++++..-.+... +.+... ..+-++... ...+...++++ +|++.+ T Consensus 152 ~~~s~~a~~a~l~~A~~~~~~~v~~~w~p~~~--~~~~dL----~~LeDp~~~~~~~~~a~~v~~v~~~~~~~~~P~~~~ 225 (298) T 2rin_A 152 VESSEQGMLAQVARAEKSGDPIVFLGWEPHPM--NANFKL----TYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVDK 225 (298) T ss_dssp ECCCHHHHHHHHHHHHHTTCCCEEEEEESSTH--HHHSCE----EECBSCTTTTCHHHHEEEEEEEEETTHHHHSHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHCCCE----EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHH T ss_conf 04646779999999984688579982687322--203764----780588544688876200002875667776979999 Q ss_pred HHHH----------HHHHHHHCC-HHHHHHHHHCCCC Q ss_conf 9999----------999999798-5999998767888 Q gi|254781112|r 239 SINE----------ILCAIHLDG-TYKKIFDRYFDKN 264 (274) Q Consensus 239 ~in~----------~l~~l~~~G-~~~~I~~kw~g~d 264 (274) .+++ ...++..+| ..++.-+.|+..+ T Consensus 226 ~L~~~~l~~~~m~~ln~~v~~~g~~~~~vA~~wL~~n 262 (298) T 2rin_A 226 LLQNLSFSLQMENEIMGKILNDGEDPEKAAAAWLKDN 262 (298) T ss_dssp HHHHCCCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHS T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 9996779999999999999864999999999999979 No 60 >2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Probab=96.21 E-value=0.026 Score=32.66 Aligned_cols=190 Identities=13% Similarity=0.121 Sum_probs=105.5 Q ss_pred HHHHHHCCCCCCCCCCCHHH---HHHHHHCCCCCC----CH--HCCCCHH---HHHHH---CCC--CCCCCCCCCCCCCC Q ss_conf 78997629985556689889---886431032211----00--0036756---75420---023--33222222222111 Q gi|254781112|r 74 KEVAHRLNLKVEFFETAVSG---LITGLDTNRYDV----LV--NVAITPE---RQKKY---DFS--IPYIAHRVLLVVRS 136 (274) Q Consensus 74 ~~i~~~lg~~~~~~~~~~~~---~~~~l~~g~~D~----~~--~~~~t~e---R~~~~---~fs--~p~~~~~~~~~~~~ 136 (274) +.+.+.+|.++..+..|=.+ ....+.+..-|. +. +....+. ....+ +|. ......+.++++++ T Consensus 40 ~~l~k~lg~~v~V~N~pGagG~~g~~~~~~~~~Dg~t~~~~~~~~~~~~~l~~~~~~~~~~df~~i~~~~~~~~~~~v~~ 119 (312) T 2f5x_A 40 ESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARG 119 (312) T ss_dssp HHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTTSEEEEEEEEEEEEEEEECT T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCEEEEECC T ss_conf 99999869987999789821599999999569999815652155344520015788884886330010004756898679 Q ss_pred CCCCCCCCCCCCC--------CCEEEE-CCCHHH----HHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 2222111112334--------320231-010122----332013--4542133685577775544321003665589999 Q gi|254781112|r 137 DQQDIRSFKDLTD--------KTVAQI-LGTDLS----RFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFN 201 (274) Q Consensus 137 ~~~~~~~~~dL~g--------~~V~~~-~g~~~~----~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~ 201 (274) ++ .+++++||.. .+++.. .|+... .+.+.. +.+.+.|....+.+..|..|++|+.+........ T Consensus 120 ~s-~~~t~~dli~~ak~~p~~v~~g~~g~gs~~~~~~~~~~~~~G~~~~~V~y~G~~~~~~al~~G~vd~~~~~~~~~~~ 198 (312) T 2f5x_A 120 DF-PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQ 198 (312) T ss_dssp TC-SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHH T ss_pred CC-CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCHHHH T ss_conf 88-40337899998733877614643789948899998999863984441356771777777536831312357300144 Q ss_pred HHHHCCCCC---------C---CEEECCC-----CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC Q ss_conf 998458766---------7---3262367-----76877079998189-9899999999999999798599999876788 Q gi|254781112|r 202 FLERRPHDG---------N---LFKIADR-----MKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274) Q Consensus 202 ~~~~~~~~~---------~---~~~~~~~-----~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274) +.+.-.... . .++...+ .......++..+++ .++.++.+.+++.++.+|.++.+-.++ .|. T Consensus 199 ~~~~g~l~~La~~~~~r~~~~pdvPT~~E~G~~~~~~~~~~g~~ap~gtp~~~v~~l~~a~~~~~~~pe~~~~~~~-~g~ 277 (312) T 2f5x_A 199 QITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQ-LGA 277 (312) T ss_dssp HHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH-TTC T ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH-CCC T ss_conf 5534675499982776554368999806527887503552025326779999999999999999739999999997-699 Q ss_pred CC Q ss_conf 87 Q gi|254781112|r 264 NI 265 (274) Q Consensus 264 d~ 265 (274) ++ T Consensus 278 ~~ 279 (312) T 2f5x_A 278 EV 279 (312) T ss_dssp EE T ss_pred CC T ss_conf 61 No 61 >1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Probab=95.97 E-value=0.0094 Score=35.38 Aligned_cols=188 Identities=10% Similarity=0.022 Sum_probs=101.8 Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHHCC-CCCCCHHCCCCHHH-HHH---HCCC--CCCCCCCCCCCCCCCCCCCCC Q ss_conf 2167899762998555668988988643103-22110000367567-542---0023--332222222221112222111 Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLDTN-RYDVLVNVAITPER-QKK---YDFS--IPYIAHRVLLVVRSDQQDIRS 143 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g-~~D~~~~~~~t~eR-~~~---~~fs--~p~~~~~~~~~~~~~~~~~~~ 143 (274) +|+.+..++.|++|+++.-....+...+++| .+|++.+....... ... .... .++......++...+.....+ T Consensus 16 ~l~~~Fek~tGi~V~~~~g~sg~l~~~i~~g~~~D~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (231) T 1atg_A 16 QLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLVDNQ 95 (231) T ss_dssp HHHHHHHHHHCCCEEEEEECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEESSTTTSCTT T ss_pred HHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCC T ss_conf 99999998529889999888899999998499984999666666788986144234642676302289862477778886 Q ss_pred CCCCCC---CCEEEECC------CHHHHHHHCC--------CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 112334---32023101------0122332013--------454213368557777554432100366558999999845 Q gi|254781112|r 144 FKDLTD---KTVAQILG------TDLSRFAKEL--------KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERR 206 (274) Q Consensus 144 ~~dL~g---~~V~~~~g------~~~~~~l~~~--------~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~ 206 (274) ++||.. ++|++... .......... ..++....+..+....+..|++|+.+........ ... T Consensus 96 ~~~l~~~~~~~i~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~s~~~~--~~~ 173 (231) T 1atg_A 96 GKVLAGNGWRHIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVALAQIIQ--AAA 173 (231) T ss_dssp SGGGGSSSCSCEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHHTTSSSEEEEEGGGTCC--TTS T ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHCEEECCCCHHHHHHHHCCCCCEEEEHHHHHHH--HHH T ss_conf 888277547879996898782068999999872822555543106210231478888870775345105778898--764 Q ss_pred CCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC Q ss_conf 87667326236776877079998189--989999999999999979859999987678887 Q gi|254781112|r 207 PHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274) Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274) ......+.+.........+.+++.++ |++....|-+. ..|.+-++++.+| |..+ T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~a~n~~~A~~Fidf----L~S~e~Q~i~~~~-Gf~~ 229 (231) T 1atg_A 174 KIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSW----MKGPKAVAIIKAA-GYVL 229 (231) T ss_dssp CCSSEEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHHH----TTSHHHHHHHHHT-TCBC T ss_pred CCCCEEEECCCCCCEEEEEEEEEECCCCCHHHHHHHHHH----HCCHHHHHHHHHH-CCCC T ss_conf 368604415866670556779998599997999999999----7899999999984-8989 No 62 >1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A Probab=95.94 E-value=0.007 Score=36.16 Aligned_cols=197 Identities=15% Similarity=0.276 Sum_probs=108.0 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274) +|+|+||+.+....+ +..+++..+.++. ++++++...+...+++.+.+|++|++....... ... T Consensus 4 ~G~lrIg~~~~~~~~-------------~lp~~l~~f~~~~P~v~i~i~~~~~~~l~~~l~~~~~d~~~~~~~~~--~~~ 68 (219) T 1i6a_A 4 SGPLHIGLIPTVGPY-------------LLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILALVKE--SEA 68 (219) T ss_dssp CEEEEEEECTTTHHH-------------HHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEEECCGG--GTT T ss_pred EEEEEEEEEHHHHHH-------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCHHHHCCCCCC--CCC T ss_conf 189999837779999-------------99999999999888968999988848888887536401010235532--345 Q ss_pred HCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEC-CCHHH----HHHHCCCC---CCEEECCHHHHHHHHHH Q ss_conf 0023332222222221112222----1111123343202310-10122----33201345---42133685577775544 Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQIL-GTDLS----RFAKELKS---HLVFSHNFEQSLQLLLS 186 (274) Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~-g~~~~----~~l~~~~~---~~~~~~~~~~~~~~l~~ 186 (274) + ...++......++++++++. .-+++|+.+..+.... +.... ....+.+. ....+++.+....++.+ T Consensus 69 ~-~~~~l~~~~~~~v~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 147 (219) T 1i6a_A 69 F-IEVPLFDEPMLLAIYEDHPWANREAVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAA 147 (219) T ss_dssp S-EEEEEEEEEEEEEEETTSGGGGCSCEEGGGGTTSEEECCTTTTCSSCTTSSCSSCTTSEEECTTTTSCHHHHHHHHHT T ss_pred C-CCCCCCCCCEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH T ss_conf 3-234344553699992597111699989899804768984587531567778999738998704774899999999980 Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH--CCHHHHHHH Q ss_conf 321003665589999998458766732623-677687707999818998999999999999997--985999998 Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKGNNKLTRSINEILCAIHL--DGTYKKIFD 258 (274) Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~--~G~~~~I~~ 258 (274) |..=++ .+...+. ..........+. ..+.....++++.+++.+ +...+...+..+++ ++.++++.+ T Consensus 148 g~gi~~-lp~~~~~----~~~~~~~l~~l~~~~~~~~~~~~lv~~~~~~-~~~~~~~~~~~lr~~~~~~~~~~~~ 216 (219) T 1i6a_A 148 GSGITL-LPALAVP----PERKRDGVVYLPAIKPEPRRTIGLVYRPGSP-LRSRYEQLAEAIRARMDGHFDKVLK 216 (219) T ss_dssp TSCBEE-EEGGGSC----SSSEETTEEEECEESSCCEEEEEEEECTTCT-THHHHHHHHHHHHHHHTTTTC---- T ss_pred CCEEEE-ECHHHHH----HHHHCCCEEEEECCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998999-0389997----5510798899988899853599999979196-7899999999999999876878862 No 63 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A Probab=95.83 E-value=0.036 Score=31.72 Aligned_cols=196 Identities=10% Similarity=0.054 Sum_probs=109.7 Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHH Q ss_conf 88589589996289987248704699848898852167899762-99855566898898864310322110000367567 Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPER 115 (274) Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR 115 (274) ....++|+||+.+.+.. . +..+++..+.++. ++.++++..+..+.+..+.+|++|++......++. T Consensus 88 ~~~~~~l~I~~~~~~~~-~------------~l~~~i~~~~~~~p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~ 154 (305) T 3fxq_A 88 GRWEGHITFAASPAIAL-A------------ALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDI 154 (305) T ss_dssp HHHHTEEEEEECHHHHH-T------------HHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGS T ss_pred CCCCCEEEEEECCCHHH-H------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCCC T ss_conf 47662599962463027-6------------7899999999978997676574481777778755973489984055435 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEEECCC-H----HHHHHHCCCC---C-CEEECCHHHHHHHH Q ss_conf 5420023332222222221112222--111112334320231010-1----2233201345---4-21336855777755 Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQD--IRSFKDLTDKTVAQILGT-D----LSRFAKELKS---H-LVFSHNFEQSLQLL 184 (274) Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~--~~~~~dL~g~~V~~~~g~-~----~~~~l~~~~~---~-~~~~~~~~~~~~~l 184 (274) ...+ ...|+...+.+++++++.+. ..+++|+.+......... . ..++..+.+. + ....++......++ T Consensus 155 ~~~l-~~~~l~~~~~~~~~~~~hpl~~~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v 233 (305) T 3fxq_A 155 DTDL-EAQPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVV 233 (305) T ss_dssp CTTE-EEEEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHH T ss_pred CCCC-EEEECCCCCEEEEECCCCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH T ss_conf 6884-378714441799986888456898956753021455237765312577899971986322333336799999999 Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECC---CHHHHHHHHHHHHHHHHCC Q ss_conf 44321003665589999998458766732623-6776877079998189---9899999999999999798 Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKG---NNKLTRSINEILCAIHLDG 251 (274) Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~---~~~L~~~in~~l~~l~~~G 251 (274) .+|..= .+.+...+... ........+. ..+.....+++..+++ ++.....++..=....++| T Consensus 234 ~~g~gi-~~lp~~~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~~~~ 299 (305) T 3fxq_A 234 AHSDLL-TTMPRTLYERN----AFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHALQTG 299 (305) T ss_dssp HTSSCE-EEEEHHHHHSS----TTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC--- T ss_pred HCCCEE-EECCHHHHHHH----HHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 749989-98119999855----1379989996888887768999998969889999999999999999528 No 64 >2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} Probab=95.76 E-value=0.024 Score=32.81 Aligned_cols=187 Identities=13% Similarity=0.073 Sum_probs=99.8 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCC--CC----CCHHHHHHHHHCCCCCCCH-HCC-- Q ss_conf 89589996289987248704699848898852167899762998555--66----8988988643103221100-003-- Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEF--FE----TAVSGLITGLDTNRYDVLV-NVA-- 110 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~--~~----~~~~~~~~~l~~g~~D~~~-~~~-- 110 (274) +-+||++. .+||-.-. ++ ++ ..+++.|.++.|=++++ .+ .+...+++.++.|.+|+.. +.+ T Consensus 8 ~~tlk~~~--~~p~~~~~-----~~--~~-~~fa~~v~e~s~G~v~i~v~~~g~Lg~~~e~~~~v~~G~vd~~~~~~~~~ 77 (327) T 2hpg_A 8 KYTLRFGH--VLAPGEPY-----HQ--AF-LKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARL 77 (327) T ss_dssp SEEEEEEC--CCSTTSHH-----HH--HH-HHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHH T ss_pred CEEEEEEC--CCCCCCHH-----HH--HH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHH T ss_conf 77999978--88998989-----99--99-99999999876992999996687668879999999769970673243012 Q ss_pred --CCHHHHHHHCCCCCCC---------------------------------------------CCCCCCCCCCCCCCCCC Q ss_conf --6756754200233322---------------------------------------------22222221112222111 Q gi|254781112|r 111 --ITPERQKKYDFSIPYI---------------------------------------------AHRVLLVVRSDQQDIRS 143 (274) Q Consensus 111 --~t~eR~~~~~fs~p~~---------------------------------------------~~~~~~~~~~~~~~~~~ 143 (274) ..|+- -.|..||+ ......+.. ...+++ T Consensus 78 ~~~~p~~---~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~--~~pi~s 152 (327) T 2hpg_A 78 GMYVKDI---GVMNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRHFVT--NKPIRK 152 (327) T ss_dssp TTTSGGG---GGGGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEE--SSCCSS T ss_pred HHHHHHH---CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC--CCCCCC T ss_conf 1256663---20234200466555888999999999864989999999998862984231212576056765--888899 Q ss_pred CCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC Q ss_conf 11233432023101012233201345421336855777755443210036655899999984587667326236776877 Q gi|254781112|r 144 FKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNS 223 (274) Q Consensus 144 ~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (274) ++||+|++|.+..+-...++++..+...+..+ ..+.+.+|.+|.+|+........ ....-........ ....... T Consensus 153 ~~DlkG~kiR~~g~~~~~~~~~~~Ga~pv~~~-~~ev~~aLqtG~iDg~~~~~~~~-~~~~~~e~~~~~t---~~~~~~~ 227 (327) T 2hpg_A 153 PEDLNGLRIRTPGAPAWQESIRSLGAIPVAVN-FGEIYTAVQTRAVDGAELTYANV-YNGGLYEVLKYMS---ETGHFLL 227 (327) T ss_dssp GGGGTTCEEECCSSHHHHHHHHHHTSEEECCC-GGGHHHHHHTTSCSEEEECHHHH-HHTTGGGTCCEEE---EEEEEEE T ss_pred HHHHCCCEEEECCCHHHHHHHHHCCCCCCCCC-CCCHHHHHHCCCEEEEEECCCCC-CCCCCEEEECEEE---CCCCCCC T ss_conf 79977985984487478999997388310467-64166798758645897242000-1355000204586---2897542 Q ss_pred CEEEEEECC-----CHHHHHHHHHHHHH Q ss_conf 079998189-----98999999999999 Q gi|254781112|r 224 AVAFMMRKG-----NNKLTRSINEILCA 246 (274) Q Consensus 224 ~~~~~~~k~-----~~~L~~~in~~l~~ 246 (274) ...+.++++ +++.+..+.++..+ T Consensus 228 ~~~~~~n~~~~~~L~~e~q~~l~~a~~~ 255 (327) T 2hpg_A 228 INFEIVSADWFNSLPKEYQKIIEEEMDK 255 (327) T ss_dssp EEEEEEEHHHHHHSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 0588714999974999999999999999 No 65 >3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus} Probab=95.63 E-value=0.028 Score=32.40 Aligned_cols=192 Identities=11% Similarity=0.030 Sum_probs=109.0 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274) .+++++||+.+.... .+...++..+.+.. |+++++...+.+.+.+.|..|++|++.+....+. . T Consensus 17 ~~~~~rI~~~~~~~~-------------~~lp~ll~~l~~~~P~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~~~~~--~ 81 (241) T 3oxn_A 17 CDQTFTIATTDYAMQ-------------TILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPV--E 81 (241) T ss_dssp CCCEEEEEECSHHHH-------------HTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCC--T T ss_pred CCCEEEEEECHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCC--C T ss_conf 686899997379999-------------9999999999998869289999798799999997598542220267874--1 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCEEE-ECCCHHH----HHHHCCCC-C-CEEECCHHHHHHHHHHH Q ss_conf 200233322222222211122221---1111233432023-1010122----33201345-4-21336855777755443 Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDI---RSFKDLTDKTVAQ-ILGTDLS----RFAKELKS-H-LVFSHNFEQSLQLLLSK 187 (274) Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~---~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~-~-~~~~~~~~~~~~~l~~g 187 (274) . .-+.+++....+++++++.+.. -+++|+....... ..+.... ..+.+... + .....+....+.++..| T Consensus 82 ~-l~~~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~lv~~~ 160 (241) T 3oxn_A 82 P-LRSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTL 160 (241) T ss_dssp T-EEEEEEECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--C T ss_pred C-CCCCCCCCCCCEEECCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC T ss_conf 0-113543223640223766503202588999952986999579986239999999679998559967899999999759 Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC---CCHH---HHHHHHHHHHHHHHC Q ss_conf 21003665589999998458766732623677687707999818---9989---999999999999979 Q gi|254781112|r 188 RTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK---GNNK---LTRSINEILCAIHLD 250 (274) Q Consensus 188 rvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~~---L~~~in~~l~~l~~~ 250 (274) .. .++.+...+..+...... . +.-.+.......++++-++ .+|. |++.+-+...++.+. T Consensus 161 ~~-i~ilP~~~~~~~~~~~~L--~-~~plp~~~p~~~~~l~Wh~~~~~~pa~~wlR~~i~e~~~~l~~~ 225 (241) T 3oxn_A 161 PI-IITVPADLAYLVAERYDL--V-VKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSRLIAK 225 (241) T ss_dssp CC-EEEEEHHHHHHHHHHTTE--E-EECCSSCCCCCCEEEEEEGGGTTCHHHHHHHHHHHHHHHHHHHH T ss_pred CE-EEEHHHHHHHHHHHCCCE--E-EECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 97-998799999988653996--9-98489998976899997999889989999999999999999997 No 66 >3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis} Probab=95.53 E-value=0.0058 Score=36.66 Aligned_cols=189 Identities=11% Similarity=0.070 Sum_probs=102.7 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274) -.|+|+||+.+...++ +..+++..+.++. ++++++...+..+.++.|.+|++|++....... .. T Consensus 9 ~~G~l~ig~~~s~~~~-------------~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~~~~--~~ 73 (232) T 3ho7_A 9 LTGRLNIAVLPTIAPY-------------LLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAE--TE 73 (232) T ss_dssp -CEEEEEEECTTTHHH-------------HHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCC--CT T ss_pred CEEEEEEEEEHHHHHH-------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCC--CC T ss_conf 6279999943778999-------------99999999999888968999989828999999779842898634765--54 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHHH----HHHHCCCC---C-CEEECCHHHHHHHH Q ss_conf 20023332222222221112222----11111233432023-1010122----33201345---4-21336855777755 Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDLS----RFAKELKS---H-LVFSHNFEQSLQLL 184 (274) Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~---~-~~~~~~~~~~~~~l 184 (274) .+ -..+++....+++++++.+. .-+.++|.+..+.. ..+..+. ++..+.+. + .....+......++ T Consensus 74 ~l-~~~~l~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 152 (232) T 3ho7_A 74 GL-EDDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLV 152 (232) T ss_dssp TE-EEEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHH T ss_pred CC-EEEEECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH T ss_conf 30-03420001022211134543322222133314553798259974267999999975998876501358889999999 Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 4432100366558999999845876673262367768770799981899899999999999999 Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIH 248 (274) Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~ 248 (274) .+|-.=+ +.+...+..+.... .........+.....++++.+++.. +...+.+.++.++ T Consensus 153 ~~g~Gia-~lP~~~~~~~~~~~---~l~~~p~~~~~~~~~i~lv~~~~~~-~~~~~~~fi~~l~ 211 (232) T 3ho7_A 153 ESGQGIT-FIPQLTVEQLSPSQ---KELVRPFGMPRPVREVRLAVRQDYS-RRKLREQLIGLLR 211 (232) T ss_dssp HTTCCEE-EEEGGGGGGSCHHH---HTTEECBCSSEEEEEEEEEEETTCS-CHHHHHHHHHHHH T ss_pred HHCCEEE-EECHHHHHHHCCCC---CEEEEECCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHH T ss_conf 9399899-83099998550279---8899988999865599999989398-8999999999999 No 67 >2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP} Probab=95.49 E-value=0.0084 Score=35.66 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=97.7 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274) +|+|+||+.+....+ +..+++..+.+.. +++++++..+..++...|.+|++|++...... .... T Consensus 4 ~G~lrIg~~~~~~~~-------------~l~~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~Dl~i~~~~~--~~~~ 68 (209) T 2ql3_A 4 AGPIAVGCYPALGPT-------------ILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLD--LSPE 68 (209) T ss_dssp CEEEEEEECGGGTTT-------------THHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSS--CCTT T ss_pred CEEEEEEEEHHHHHH-------------HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEECCC--CCCC T ss_conf 289999968899999-------------9999999999988793899998982899987607983588530465--4200 Q ss_pred HCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCEEEECCCHHH-H---HHHCCCC---CCEEECCHHHHHHHHHH Q ss_conf 002333222222222111222-----2111112334320231010122-3---3201345---42133685577775544 Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQ-----DIRSFKDLTDKTVAQILGTDLS-R---FAKELKS---HLVFSHNFEQSLQLLLS 186 (274) Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~-----~~~~~~dL~g~~V~~~~g~~~~-~---~l~~~~~---~~~~~~~~~~~~~~l~~ 186 (274) + .+.+.......++++++.+ ..-+++||.+..+....+.... . ...+.+. ...++++......++.+ T Consensus 69 ~-~~~~~~~~~~~~v~~~~~~la~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 147 (209) T 2ql3_A 69 W-QTVPLMTREPMVVLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGR 147 (209) T ss_dssp E-EEEEEEEECCEEEEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHH T ss_pred H-HEECCCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC T ss_conf 0-000012112222246898345179966799883398563289951889999999749995069982637778999981 Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCE--EECCCCCCCCCEEEEEECCC Q ss_conf 321003665589999998458766732--62367768770799981899 Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLF--KIADRMKDNSAVAFMMRKGN 233 (274) Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~ 233 (274) |..=+++-... ... ......... +...+......++++.+++. T Consensus 148 g~Gi~~lp~~~-~~~---~~~~~~~~~~~pl~~~~~~~~~i~l~~~~~~ 192 (209) T 2ql3_A 148 GLGWTLLLQRP-RVD---VTYEGLPVVVKPIAEPKPASVAVVVAWHQEA 192 (209) T ss_dssp TSCBEEESCCC-SSC---BCTTSCBEEEEEBCSSCCCCEEEEEEEETTC T ss_pred CCEEEEEEHHH-HHH---HHHCCCCEEEEECCCCCCCEEEEEEEECCCC T ss_conf 99599902688-877---8647997899977888874479999991989 No 68 >3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis} Probab=95.47 E-value=0.053 Score=30.70 Aligned_cols=184 Identities=13% Similarity=0.140 Sum_probs=104.7 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274) +|+||||+.+...++- ...++..+.++. ++++++...+...+++.|.+|++|++......+ ... T Consensus 3 ~G~lrIG~~~s~~~~~-------------lp~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~~--~~~ 67 (219) T 3jv9_A 3 EGAFKLGLIFTVAPYL-------------LPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQ--EPG 67 (219) T ss_dssp CCCEEEEEETTTHHHH-------------HHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCC--CTT T ss_pred CEEEEEEEEHHHHHHH-------------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCC--CCC T ss_conf 0289999777889999-------------9999999999888928999988737777656169588875026877--787 Q ss_pred HCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEE-ECCCHHHHHH----HCCC--------CCCEEECCHHHHH Q ss_conf 002333222222222111222----211111233432023-1010122332----0134--------5421336855777 Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQ-ILGTDLSRFA----KELK--------SHLVFSHNFEQSL 181 (274) Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~-~~g~~~~~~l----~~~~--------~~~~~~~~~~~~~ 181 (274) + -+.+++....+++++++.. ...+++|+.+..... ..+......+ .+.+ .......+..... T Consensus 68 ~-~~~~l~~e~~~lv~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (219) T 3jv9_A 68 I-VTEPLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIR 146 (219) T ss_dssp E-EEEEEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHH T ss_pred E-EEEEECCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHH T ss_conf 4-898503310899975664212245421133322774446888526789999999758985313455626778799999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECCC--HHHHHHHHHHHH Q ss_conf 75544321003665589999998458766732623-67768770799981899--899999999999 Q gi|254781112|r 182 QLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKGN--NKLTRSINEILC 245 (274) Q Consensus 182 ~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~--~~L~~~in~~l~ 245 (274) +++.+|..=+ +.+.... ............ ..+.....++++.+|+. +.....+-+.|. T Consensus 147 ~lv~~G~Gi~-~lP~~~~-----~~~~~~~l~~~pl~~~~~~~~i~lv~~k~~~~~~~~~~~~~~l~ 207 (219) T 3jv9_A 147 HMVASGLAIS-VLPATAL-----TENDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIM 207 (219) T ss_dssp HHHHHTSCEE-EEEGGGC-----CTTCTTTEEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHH T ss_pred HHHHCCCEEE-ECCHHHH-----HHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH T ss_conf 9998599899-8718897-----11427998999888998545999999894988999999999999 No 69 >3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A Probab=95.39 E-value=0.039 Score=31.57 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=93.1 Q ss_pred EEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCC-CC------HHHHHHHCCCCCC-CCCCCCCCCCCCCCCC Q ss_conf 52167899762998555668988988643103221100003-67------5675420023332-2222222211122221 Q gi|254781112|r 70 IDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVA-IT------PERQKKYDFSIPY-IAHRVLLVVRSDQQDI 141 (274) Q Consensus 70 ~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~-~t------~eR~~~~~fs~p~-~~~~~~~~~~~~~~~~ 141 (274) ..|+..+.+.+|++|+.+..+-.-+..+|.+|++|+..... .+ .........-.+. ......+.+.+ ...+ T Consensus 18 a~i~~~~Le~~Gy~Ve~~~~~~~~~~~al~~G~iDi~~e~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vp~-~~~i 96 (256) T 3l6g_A 18 INVLTQAMKEHGFDVKTTALDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPS-YMNV 96 (256) T ss_dssp HHHHHHHHHHTTEEEEEEECCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEET-TSCC T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEECC-CCCC T ss_conf 999999999869945998788489999998799829851143245566676326765880224678626898755-1240 Q ss_pred CCCCCCCCCCE----EEECCCHH----HHHHHCCC--CCCEEECCH-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 11112334320----23101012----23320134--542133685-----57777554432100366558999999845 Q gi|254781112|r 142 RSFKDLTDKTV----AQILGTDL----SRFAKELK--SHLVFSHNF-----EQSLQLLLSKRTDATMIPDIPFFNFLERR 206 (274) Q Consensus 142 ~~~~dL~g~~V----~~~~g~~~----~~~l~~~~--~~~~~~~~~-----~~~~~~l~~grvD~~~~~~~~~~~~~~~~ 206 (274) ++++||+++.- |...|... ...+...+ ......... .+...++.+|+.+++..-.+... +.+. T Consensus 97 ~si~dl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~A~~~~~~~v~~~w~p~~~--~~~~ 174 (256) T 3l6g_A 97 NSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWM--FNKY 174 (256) T ss_dssp CBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTTCGGGTTCEEECCCHHHHHHHHHHHHHTTCCCCEEEEESCTH--HHHS T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHC T ss_conf 25778765664044367865442411376775403454431204650778999999976479779995067066--5408 Q ss_pred CCCCCCEEECCCC---CCCCCEEEEEECC----CHHHHHHHHHH----------HHHHHHCCHHHHHHHHHCCCC Q ss_conf 8766732623677---6877079998189----98999999999----------999997985999998767888 Q gi|254781112|r 207 PHDGNLFKIADRM---KDNSAVAFMMRKG----NNKLTRSINEI----------LCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 207 ~~~~~~~~~~~~~---~~~~~~~~~~~k~----~~~L~~~in~~----------l~~l~~~G~~~~I~~kw~g~d 264 (274) .. ..+.++. ........+++++ +|++.+.+++. ..++.+....++..+.|+.++ T Consensus 175 ~l----~~LeDp~~~~~~~~~~~~v~~~~~~~~~P~~~~~L~~~~lt~~~~~~l~~~v~~g~~~~~vA~~wL~~n 245 (256) T 3l6g_A 175 DL----KYLADPKGTMGTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDIQNGKTPEEAAKNWIKDH 245 (256) T ss_dssp CE----EECBCTTCTTCCCEEEEEEEETTHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHT T ss_pred CE----EEECCCCHHCCCCCCCCEEECHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 64----781676300132345533101344432989999998678999999999999985999999999999989 No 70 >1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A Probab=94.84 E-value=0.18 Score=27.45 Aligned_cols=173 Identities=14% Similarity=0.092 Sum_probs=101.2 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274) ..+.+++++.+.... .+...++..+.++. ++++++...++...++.|.+|++|++.+..... .. T Consensus 89 ~~~~i~~~~~~~~~~-------------~~l~~~~~~~~~~~p~v~~~i~~~~~~~~~~~l~~g~~Di~i~~~~~~--~~ 153 (294) T 1ixc_A 89 DVGELSVAYFGTPIY-------------RSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPR--HP 153 (294) T ss_dssp CCEEEEEEECSGGGG-------------THHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCC--CT T ss_pred CCCEEEEECCCCHHH-------------HHHHHHHHHHHHCCCCCCCCCEEECCHHCCCCCCCCCEEEEEECCCCC--CC T ss_conf 652378732530799-------------999999999753187644430452031003211479646888516777--87 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCEEEEC-CC--HH----HHHHHCCCC---CCEEECCHHHHHHH Q ss_conf 200233322222222211122221----111123343202310-10--12----233201345---42133685577775 Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDI----RSFKDLTDKTVAQIL-GT--DL----SRFAKELKS---HLVFSHNFEQSLQL 183 (274) Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~----~~~~dL~g~~V~~~~-g~--~~----~~~l~~~~~---~~~~~~~~~~~~~~ 183 (274) .+. +.|+.....+++++++.+.. -+++|+.+....... +. .+ ..++++.+. ....+++....+.+ T Consensus 154 ~l~-~~~l~~~~~~~~~~~~h~~~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 232 (294) T 1ixc_A 154 GIE-IVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALAL 232 (294) T ss_dssp TEE-EEEEEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHH T ss_pred CCC-CCCCCCCEEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHH T ss_conf 542-2201352079998273076539999999981899799638767514677777653245477446886579999999 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC Q ss_conf 54432100366558999999845876673262367768770799981899 Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN 233 (274) Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 233 (274) +.+|..-+++ +.... .....+...+.+.+ +.....+++..++++ T Consensus 233 v~~g~gia~l-p~~~~----~~~~~~~~~~~l~~-~~~~~~~~li~~~~~ 276 (294) T 1ixc_A 233 TMAGAASSIV-PASVA----AIRWPDIAFARIVG-TRVKVPISCIFRKEK 276 (294) T ss_dssp HHTTSCBEEE-EHHHH----TSCCTTEEEEEECC-TTCEEEEEEEEESSS T ss_pred HHHCCEEEEC-CHHHH----HHHCCCEEEEECCC-CCCEEEEEEEEECCC T ss_conf 9949979981-08898----55229859997789-886038999997999 No 71 >3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} Probab=94.63 E-value=0.013 Score=34.54 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=94.8 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274) .++++||+.+.... .+..+++..+.+.. ++++++...+.+..++.|.+|++|++....... ... T Consensus 94 ~~~~~i~~~~~~~~-------------~~l~~~l~~~~~~~P~i~l~~~~~~~~~~~~~L~~~~~Di~i~~~~~~--~~~ 158 (306) T 3fzv_A 94 AGQIDIGCFETVAP-------------LYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDL--DST 158 (306) T ss_dssp CEEEEEEEEGGGHH-------------HHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSC--CTT T ss_pred CCEEEEEEEHHHHH-------------HHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCC--CCC T ss_conf 75268885047899-------------998999999985389749999978779999999859973688835789--987 Q ss_pred HCCCCCCC-CCCCCCCCCCCCCC----CCCCCCCCCCCEEEECCCHH----HHHHHCCCC---CCEEECCHHHHHHHHHH Q ss_conf 00233322-22222221112222----11111233432023101012----233201345---42133685577775544 Q gi|254781112|r 119 YDFSIPYI-AHRVLLVVRSDQQD----IRSFKDLTDKTVAQILGTDL----SRFAKELKS---HLVFSHNFEQSLQLLLS 186 (274) Q Consensus 119 ~~fs~p~~-~~~~~~~~~~~~~~----~~~~~dL~g~~V~~~~g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~ 186 (274) .. ..|.+ .....++++++.+. ..+++||.+..+....+... ..+..+.+. ....+++......++.. T Consensus 159 ~~-~~~l~~~~~~~v~~~~~~~l~~~~~~~~~dl~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~ 237 (306) T 3fzv_A 159 IE-TEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQ 237 (306) T ss_dssp EE-EEESSCCBCCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHT T ss_pred CE-EEEECCCCEEEEEECCCHHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC T ss_conf 25-89921462689996264265337889999981799898459876510455676538775425467888999999980 Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCE-EE-CCCCCCCCCEEEEEECCC Q ss_conf 321003665589999998458766732-62-367768770799981899 Q gi|254781112|r 187 KRTDATMIPDIPFFNFLERRPHDGNLF-KI-ADRMKDNSAVAFMMRKGN 233 (274) Q Consensus 187 grvD~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~k~~ 233 (274) |..=+++ +.... .........+ .. ...+.....+++..+++. T Consensus 238 g~gi~~l-p~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 281 (306) T 3fzv_A 238 GFGFSLL-VTRPH----SECTYDGKKVVMVDLAEPVSTSGLAAAWLKRA 281 (306) T ss_dssp TSCBEEE-CCCCS----CSBCTTSCBEEEEEESSCCCBCCCEEEEETTS T ss_pred CCEEEEE-EHHHH----HHHHHCCCCEEEEECCCCCCCCEEEEEEECCC T ss_conf 9949994-25878----89875699779986778876427999998989 No 72 >2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Probab=94.44 E-value=0.056 Score=30.57 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=76.1 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCC--HHCCCCHHHHHHHCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 99855566898898864310322110--0003675675420023332222----22222111222211111233432023 Q gi|254781112|r 81 NLKVEFFETAVSGLITGLDTNRYDVL--VNVAITPERQKKYDFSIPYIAH----RVLLVVRSDQQDIRSFKDLTDKTVAQ 154 (274) Q Consensus 81 g~~~~~~~~~~~~~~~~l~~g~~D~~--~~~~~t~eR~~~~~fs~p~~~~----~~~~~~~~~~~~~~~~~dL~g~~V~~ 154 (274) +++++++.-+.+++-..+.+|++|+. +++.+-.-.+++...+ -.... +..++.+ ..+++|+|++|++ T Consensus 29 ~~~~~~~~~~p~~LN~~l~~g~~Dv~~iSs~~y~~~~~~y~llp-siss~G~v~sv~l~s~------~p~~~l~~~~Ial 101 (272) T 2czl_A 29 PVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALR-SGGALGRGVGPLVVAR------GPLQALEGLRVAV 101 (272) T ss_dssp SSCEEEEECCHHHHHHHHHTTCCSEEEEEHHHHTTCTTTEEECS-SSCEEESSCCCEEEES------SCCSCCTTCEEEE T ss_pred CCCCEEEECCHHHHHHHHHCCCCCEEEHHHHHHHHCCCCEEECC-CEEECCCCCCEEEEEC------CCHHHCCCCEEEE T ss_conf 98516853799999999984999886060999972727687837-4664589767599936------9845516985974 Q ss_pred ECCCHHHH-HHHCC-CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC--CCCCCCE---EE Q ss_conf 10101223-32013-454213368557777554432100366558999999845876673262367--7687707---99 Q gi|254781112|r 155 ILGTDLSR-FAKEL-KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR--MKDNSAV---AF 227 (274) Q Consensus 155 ~~g~~~~~-~l~~~-~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~ 227 (274) ...+.-.. +++-. ...........+....+..|++|+.+.-.-.+..+. +. .....+..... .....|+ .+ T Consensus 102 ~~~s~TS~~Llrill~~~~~~~~~~~~~~~~~~~~~~da~LlIGD~Al~~~-~~-~~~~v~DLG~~W~~~TGLPfvfa~w 179 (272) T 2czl_A 102 PGRHTTAYFLLSLYAQGFVPVEVRYDRILPMVAQGEVEAGLIIHESRFTYP-RY-GLVQVVDLGAWWEERTGLPLPLGAI 179 (272) T ss_dssp SCTTSHHHHHHHHHCSSCEEEECCGGGHHHHHHTTSSSEEEECTTHHHHGG-GG-TCEEEEEHHHHHHHHHSSCEEEEEE T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEECCHHHHHHH-HC-CCCEEEEHHHHHHHHHCCCCCEEEE T ss_conf 717778999999999756765577014674444388772366071776666-35-9818865899997713969574867 Q ss_pred EEECC-CHHHHHHHHHHHHHH Q ss_conf 98189-989999999999999 Q gi|254781112|r 228 MMRKG-NNKLTRSINEILCAI 247 (274) Q Consensus 228 ~~~k~-~~~L~~~in~~l~~l 247 (274) +++++ .++....+++.+.+- T Consensus 180 ~vrr~~~~~~~~~~~~~~~~s 200 (272) T 2czl_A 180 LARRDLGEGLIRALDEAVRRS 200 (272) T ss_dssp EEEGGGCHHHHHHHHHHHHHH T ss_pred EECCCCCHHHHHHHHHHHHHH T ss_conf 650545888999999999986 No 73 >2b6d_A Lactotransferrin; complex, drugs, lactoferrin; HET: NAG MAN BMA DIF; 1.40A {Bos taurus} SCOP: c.94.1.2 PDB: 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A* 2dwa_A* 2dwh_A* 2dwi_A* 2dwj_A* 2dxr_A* 2dxy_A* 2dyx_A* 2e0s_A* 2e1s_A* 2fa7_A* 2g5j_A* 2g93_A* 2h4i_A* ... Probab=94.10 E-value=0.032 Score=32.04 Aligned_cols=127 Identities=11% Similarity=0.119 Sum_probs=78.8 Q ss_pred HHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH--HC-CCCHHHHHHHCCCCCCC--------------------CC Q ss_conf 6789976299855566-8988988643103221100--00-36756754200233322--------------------22 Q gi|254781112|r 73 IKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV--NV-AITPERQKKYDFSIPYI--------------------AH 128 (274) Q Consensus 73 ~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~--~~-~~t~eR~~~~~fs~p~~--------------------~~ 128 (274) .+.+.+.++.+++.+. .+...+++.+++|++|++. +. .+...+. . ..|.. .. T Consensus 17 C~~ls~~~~~~v~Cv~~~s~~~Ci~~I~~g~ADi~~ld~~~~~~A~k~--~--l~~vvae~~~~~~~~~~~~~~~~~~~y 92 (345) T 2b6d_A 17 CQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKC--G--LVPVLAENRKSSKHSSLDCVLRPTEGY 92 (345) T ss_dssp HHHHHHHTTTSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHHT--T--CEEEEEEEECCSSSCSSCGGGSCCCCE T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHEEEECC--C--CCCEEEEEECCCCCCCCCCCCCCCCCE T ss_conf 999999639986999679999999999769987899781782222033--8--953221232368765453002467715 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEE-----CCCHHH-HHH-HCC---------------CC----------------- Q ss_conf 222221112222111112334320231-----010122-332-013---------------45----------------- Q gi|254781112|r 129 RVLLVVRSDQQDIRSFKDLTDKTVAQI-----LGTDLS-RFA-KEL---------------KS----------------- 169 (274) Q Consensus 129 ~~~~~~~~~~~~~~~~~dL~g~~V~~~-----~g~~~~-~~l-~~~---------------~~----------------- 169 (274) ..+.++++++ .+.+++||+||+.+-. .|+... .++ .+. +. T Consensus 93 ~avaVvkk~s-~~~~~~dLkGKksChtg~~~taGw~iP~~~Li~~~~~~~~~~fF~~sC~pg~~~~~~lc~lc~~~~~~~ 171 (345) T 2b6d_A 93 LAVAVVKKAN-EGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGL 171 (345) T ss_dssp EEEEEEETTS-TTCCGGGCTTSEEEESCTTCTTTTHHHHHHHHHHHTCSCTTSSSSEEECTTSCTTSGGGTTCCCSTTSC T ss_pred EEEEEEECCC-CCCCHHHHCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC T ss_conf 8999861688-877777707974032588866453333443236886555332213431647567302344406887655 Q ss_pred ------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf ------42133685577775544321003665589999998 Q gi|254781112|r 170 ------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLE 204 (274) Q Consensus 170 ------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~ 204 (274) .--.|..++-+++-|..|..|++++....+..+.. T Consensus 172 ~~C~~~~~~~Y~G~~GAlrCL~eg~GDVAFv~~~~v~~~~~ 212 (345) T 2b6d_A 172 DKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTN 212 (345) T ss_dssp STTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHHTST T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHCC T ss_conf 55679988877560357899871898458985340887538 No 74 >1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A* Probab=93.93 E-value=0.049 Score=30.92 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=94.8 Q ss_pred EEHHHHHHHCCCCCC----------------CCCCCHHHHHHHHHCCCCCC-CHHCCCCHHHH----H------HHCC-C Q ss_conf 216789976299855----------------56689889886431032211-00003675675----4------2002-3 Q gi|254781112|r 71 DLIKEVAHRLNLKVE----------------FFETAVSGLITGLDTNRYDV-LVNVAITPERQ----K------KYDF-S 122 (274) Q Consensus 71 dl~~~i~~~lg~~~~----------------~~~~~~~~~~~~l~~g~~D~-~~~~~~t~eR~----~------~~~f-s 122 (274) |=...++++.|++++ +.......+-..+..|.+|+ +.|.-+-.|-. . .... . T Consensus 19 ~~t~~ll~~aGl~~~~~~r~l~~~~~~~~i~~~~~R~~DIp~~V~~G~~DlGItG~D~l~E~~~~~~~~~~~~~v~~~~~ 98 (299) T 1h3d_A 19 DDSRELLARCGIKINLHTQRLIAMAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRR 98 (299) T ss_dssp HHHHHHHHHTTCCCCCSSSCSEEECSSSSEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHHHHHHHHHTCCCCEEEEEE T ss_pred HHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHCCCCCCEEEEEE T ss_conf 99999999879988888812261069998799998889999999749966010217877641232010167762588752 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 332222222221112222111112334320231010122332013454--213368557777554432100366558999 Q gi|254781112|r 123 IPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFF 200 (274) Q Consensus 123 ~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~ 200 (274) ..|.....++.++.+. .+.+++||+|+||+.-.-....+|+.+.+.+ ++......+. +..-|-+|+++ |-...- T Consensus 99 Lgfg~~rlvvAvP~~~-~~~~~~~l~g~RIATkyp~lt~~~~~~~gi~~~iv~~~GavE~--ap~~G~AD~Iv-Div~TG 174 (299) T 1h3d_A 99 LDFGGCRLSLATPVDE-AWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEV--APRAGLADAIC-DLVSTG 174 (299) T ss_dssp CSCCCEEEEEEEETTS-CCCCGGGGTTCEEEESCHHHHHHHHHHHTCCCEEEECSSCTTH--HHHTTSCSEEE-EEESSC T ss_pred CCCCCEEEEEEECCCC-CCCCHHHHCCCEEEEHHHHHHHHHHHHCCCEEEEEECCCCEEC--CCCCCCEEEEE-EECCCH T ss_conf 3557458999703434-6446456178488520145999999984980799325572111--67888500899-970685 Q ss_pred HHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC Q ss_conf 99984587667326236776877079998189--989999999999999979859999987678887 Q gi|254781112|r 201 NFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274) ..++.+.. .+.......+. .+..++. ++.-.+.+++-+..++. .+.+=-.+|+--|+ T Consensus 175 ~TLr~NgL-----k~i~~Il~S~a-~LI~n~~~~~~~k~~~i~~l~~rl~g--vl~Ar~~~~i~~n~ 233 (299) T 1h3d_A 175 ATLEANGL-----REVEVIYRSKA-CLIQRDGEMEESKQQLIDKLLTRIQG--VIQARESKYIMMHA 233 (299) T ss_dssp HHHHHTTE-----EEEEEEEEECE-EEEEESSCCCHHHHHHHHHHHHHHHH--HHHHHHCEEEECCC T ss_pred HHHHHCCC-----EECCEEEEEEE-EEEEECHHHCCCHHHHHHHHHHHHHH--HHHHHHEEEEEEEC T ss_conf 77998799-----40334887799-99992502010079999999999999--99664488999978 No 75 >2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 Probab=92.70 E-value=0.3 Score=26.10 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=89.2 Q ss_pred EEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCC Q ss_conf 52167899762-99855566898898864310322110000367567542002333222222222111222211---111 Q gi|254781112|r 70 IDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIR---SFK 145 (274) Q Consensus 70 ~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~---~~~ 145 (274) .+++..+.+.. ++.+.++..+...+...+.+|++|++.+.....++...-.-+.|++....+++++++.+... +.+ T Consensus 117 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~l~~g~~D~ai~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~p~~~~~~~~~ 196 (310) T 2esn_A 117 PPLMNRLQHSAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLE 196 (310) T ss_dssp HHHHHHHHHHSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCCCCTTEEEEEEEEECEEEEEESSCTTCSSSCCHH T ss_pred HHHHHHHHHCCCCCCCEEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCHHHCCCCCHH T ss_conf 99999974228863211211550333222105774058982476555777742688245447873277884235999978 Q ss_pred CC-CCCCEEEECCC----HHHHHHHCCCCC---CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC- Q ss_conf 23-34320231010----122332013454---2133685577775544321003665589999998458766732623- Q gi|254781112|r 146 DL-TDKTVAQILGT----DLSRFAKELKSH---LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA- 216 (274) Q Consensus 146 dL-~g~~V~~~~g~----~~~~~l~~~~~~---~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (274) ++ ....+....+. ..+.++.+.+.. ....++....+.++.+|.. ..+.+...+..+...... ..+. T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~s~~~~l~~v~~g~~-i~~lP~~~~~~~~~~~~l----~~~~~ 271 (310) T 2esn_A 197 GYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDF-LLTAPRHAARALAEAAGL----ALYPA 271 (310) T ss_dssp HHHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTSSC-EEEEEHHHHHHHHHHHTE----EEECC T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCE-EEHHHHHHHHHHHHCCCE----EEECC T ss_conf 9813981898379886237778999749998725996989999999993997-883689999988555997----99828 Q ss_pred CCCCCCCCEEEEEEC---CCHHH Q ss_conf 677687707999818---99899 Q gi|254781112|r 217 DRMKDNSAVAFMMRK---GNNKL 236 (274) Q Consensus 217 ~~~~~~~~~~~~~~k---~~~~L 236 (274) +.......+++.-++ .+|.. T Consensus 272 p~~~~~~~i~l~~h~~~~~~p~~ 294 (310) T 2esn_A 272 PFDIPPYVLRLYSHVQHVGRDAH 294 (310) T ss_dssp SSCCCCEEEEEEEECC--CCHHH T ss_pred CCCCCCEEEEEEECCCCCCCHHH T ss_conf 98998668999989887799899 No 76 >2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} Probab=92.39 E-value=0.52 Score=24.59 Aligned_cols=211 Identities=12% Similarity=0.105 Sum_probs=97.0 Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHH----CCCCCCCHHCC Q ss_conf 788589589996289987248704699848898852167899762998555668-9889886431----03221100003 Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLD----TNRYDVLVNVA 110 (274) Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~----~g~~D~~~~~~ 110 (274) .++.+++|+|.+...|.+ +.+.+ .+|+++.-++.|++|+++.. +...++..++ ++++|++.+.. T Consensus 18 ~~~~~~~l~Vy~~~~~~~-----~~~~~------~~i~~~FE~~~gi~V~~~~~~s~~~ll~kl~~e~~~~~~DVv~~~~ 86 (330) T 2qry_A 18 GSHMKPVLTVYTYDSFAA-----DWGPG------PVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLD 86 (330) T ss_dssp ----CCEEEEEECHHHHS-----TTSSH------HHHHHHHHTTSCSEEEEEECSCHHHHHHHHHHHGGGCCCSEEEEEE T ss_pred CCCCCCEEEEEECCCCCC-----CCCCC------HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECC T ss_conf 656798799997876553-----55777------7999999998797899995899899999999727999832999756 Q ss_pred C-CHHHHHHHC-----------------CCC----CCCCCCCCCCCCCC--CCCCCCCCCCCC----CCEEEECCC--H- Q ss_conf 6-756754200-----------------233----32222222221112--222111112334----320231010--1- Q gi|254781112|r 111 I-TPERQKKYD-----------------FSI----PYIAHRVLLVVRSD--QQDIRSFKDLTD----KTVAQILGT--D- 159 (274) Q Consensus 111 ~-t~eR~~~~~-----------------fs~----p~~~~~~~~~~~~~--~~~~~~~~dL~g----~~V~~~~g~--~- 159 (274) . .-++...-. +.. |+.....++..+++ ....++++||-. -+|+..... . T Consensus 87 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~p~s~~dL~~p~~~gki~~~~~~~~~~ 166 (330) T 2qry_A 87 NNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTP 166 (330) T ss_dssp GGGHHHHHHHTCBCCCCCCGGGCCCTTCCCCSSCEEEEEEEEEEEEETTTCSSCCSSHHHHHHCSSCCCEEEECTTTCHH T ss_pred HHHHHHHHHCCCCCCCCCCHHHHCCCHHHCCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCHH T ss_conf 77899998747521245763330364232366503204524788743322568997789985140241257427753477 Q ss_pred -HH--------------HHHHCCCCC-CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC Q ss_conf -22--------------332013454-21336855777755443210036655899999984587667326236776877 Q gi|254781112|r 160 -LS--------------RFAKELKSH-LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNS 223 (274) Q Consensus 160 -~~--------------~~l~~~~~~-~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (274) .. ++..+...+ .....+..+....+.+|++++.+........................+..... T Consensus 167 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~i~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~ 246 (330) T 2qry_A 167 GLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQ 246 (330) T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHTTEEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEE T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEECCCCEEEE T ss_conf 89999999985795699999999872676666646888765047753899951579999985579851044067870772 Q ss_pred CEEEEEECC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHC Q ss_conf 079998189--98999999999999997985999998767 Q gi|254781112|r 224 AVAFMMRKG--NNKLTRSINEILCAIHLDGTYKKIFDRYF 261 (274) Q Consensus 224 ~~~~~~~k~--~~~L~~~in~~l~~l~~~G~~~~I~~kw~ 261 (274) .-++++.|+ ++++...|=..+- |.+.++++.... T Consensus 247 ~~~~~I~k~a~~~~~A~~Fidfll----s~E~Q~~~a~~~ 282 (330) T 2qry_A 247 VEVAARTAASKQPELAQKFLQFMV----SPAFQNAIPTGN 282 (330) T ss_dssp EEEEEEBTTCSCHHHHHHHHHHHT----SHHHHTTHHHHT T ss_pred EHHHHHHCCCCCHHHHHHHHHHHC----CHHHHHHHHHHC T ss_conf 146665348997699999999975----999999999747 No 77 >1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1 Probab=92.32 E-value=0.16 Score=27.77 Aligned_cols=156 Identities=10% Similarity=0.080 Sum_probs=90.8 Q ss_pred EEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCC Q ss_conf 52167899762-998555668988988643103221100003675675420023332222222221112222----1111 Q gi|254781112|r 70 IDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQD----IRSF 144 (274) Q Consensus 70 ~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~----~~~~ 144 (274) .+++..+.++. ++++++...+-.+.++.|.+|++|++........+ .-..+.|+.....++++.++.+. --++ T Consensus 109 ~~~l~~~~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~l~~~~~i~~ 186 (324) T 1al3_A 109 PGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLY--DDLVMLPCYHWNRSIVVTPEHPLATKGSVSI 186 (324) T ss_dssp HHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCTT--SCEEEEEEEEECEEEEECTTSTTTTTSCCCH T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCC--CCEEEEEEEEEEEEEEECCCCHHCCCCCCCH T ss_conf 99999999758982899997987999866747982588630676776--6505898653005799746522103999999 Q ss_pred CCCCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC Q ss_conf 123343202310-1012----233201345---42133685577775544321003665589999998458766732623 Q gi|254781112|r 145 KDLTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA 216 (274) Q Consensus 145 ~dL~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (274) +||.+.++.... ++.. ..+....+. ....+++....+.++.+|..= .+.+...... . .......+. T Consensus 187 ~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi-~~lp~~~~~~----~-~~~~lv~~~ 260 (324) T 1al3_A 187 EELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV-GVIASMAVDP----V-SDPDLVKLD 260 (324) T ss_dssp HHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTSCE-EEEEGGGCCT----T-TCTTSEEEE T ss_pred HHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCEE-EECHHHHHHH----H-HCCCEEEEE T ss_conf 999628772048998489999999997699875699999999999999939979-9725989738----7-489989995 Q ss_pred -CCCCCCCCEEEEEECCC Q ss_conf -67768770799981899 Q gi|254781112|r 217 -DRMKDNSAVAFMMRKGN 233 (274) Q Consensus 217 -~~~~~~~~~~~~~~k~~ 233 (274) ........++++.+++. T Consensus 261 ~~~~~~~~~~~l~~r~~~ 278 (324) T 1al3_A 261 ANGIFSHSTTKIGFRRST 278 (324) T ss_dssp CBTTBCCEEEEEEEETTC T ss_pred CCCCCCCCEEEEEEECCC T ss_conf 878886557999996968 No 78 >2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D Probab=91.82 E-value=0.034 Score=31.91 Aligned_cols=68 Identities=9% Similarity=0.142 Sum_probs=36.4 Q ss_pred HHHHCCCCCCEE-ECCHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC Q ss_conf 332013454213-3685577775544321003665589--9999984587667326236776877079998189 Q gi|254781112|r 162 RFAKELKSHLVF-SHNFEQSLQLLLSKRTDATMIPDIP--FFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG 232 (274) Q Consensus 162 ~~l~~~~~~~~~-~~~~~~~~~~l~~grvD~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 232 (274) ..+++.+-++.. .-+....+..|.+|.+|+++..-.. -..+..+.. .....+ .........++++++- T Consensus 186 ~iLe~~Gy~Ve~~~~~~~~~~~~l~~GdiD~~~e~W~p~~~~~~~~~~~--g~~~~l-g~~~~~~~~G~~VP~Y 256 (268) T 2b4l_A 186 KVLEDLGYEVTLTQVEAGPMWTAIATGSADASLSAWLPNTHKAYAAKYK--GKYDDI-GTSMTGVKMGLVVPQY 256 (268) T ss_dssp HHHHHHTCEEEEEECCTTHHHHHHHHTSSSEEEEEEETTTTHHHHHHTT--TSEEEE-EEEEEEEEEEEEEETT T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHC--CCEEEC-CCCCCCCEEEEEECCC T ss_conf 9999869953788778488999997799618630156864088888609--956981-5256685799993644 No 79 >2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A* Probab=91.70 E-value=0.62 Score=24.10 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=88.8 Q ss_pred EEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC------CCC Q ss_conf 2167899762-998555668988988643103221100003675675420023332222222221112222------111 Q gi|254781112|r 71 DLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQD------IRS 143 (274) Q Consensus 71 dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~------~~~ 143 (274) +++..+.++. ++++++...+.....+.|.+|++|++......+++ . ....++......++++++.+. ..+ T Consensus 107 ~~l~~~~~~~p~v~l~~~~~~~~~l~~~l~~g~~Dlai~~~~~~~~--~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 183 (312) T 2h9b_A 107 RIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDP--A-IKHSLLRNERLMVAVHASHPLNQMKDKGVH 183 (312) T ss_dssp HHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCT--T-EEEEEEEEEEEEEEEETTSGGGGGTTTCBC T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCC--C-CEEEEECCCEEEEEECCCCHHHHCCCCCCH T ss_conf 9999999978997785313550779999976996479960688987--6-179981130599996378846653343202 Q ss_pred CCCCCCCCEEEEC---CCHH----HHHHHCCCC---CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCE Q ss_conf 1123343202310---1012----233201345---42133685577775544321003665589999998458766732 Q gi|254781112|r 144 FKDLTDKTVAQIL---GTDL----SRFAKELKS---HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLF 213 (274) Q Consensus 144 ~~dL~g~~V~~~~---g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~ 213 (274) ++||.+..+.... +... ..+..+.+. ....+++......++.+|..= .+.+.... ......... T Consensus 184 ~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~gi-~ilP~~~~-----~~~~~~l~~ 257 (312) T 2h9b_A 184 LNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGI-SLVPASTQ-----SIQLFNLSY 257 (312) T ss_dssp GGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTTSCB-EEEEGGGG-----GBCCTTEEE T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEE-EEECHHHH-----HHHHCCEEE T ss_conf 556437977984287665124666666665078861465316799999999839959-99209887-----453388799 Q ss_pred EECCCCCCCCCEEEEEECCC Q ss_conf 62367768770799981899 Q gi|254781112|r 214 KIADRMKDNSAVAFMMRKGN 233 (274) Q Consensus 214 ~~~~~~~~~~~~~~~~~k~~ 233 (274) .....+.....++++.++.+ T Consensus 258 ~pl~~~~~~~~~~l~~r~~~ 277 (312) T 2h9b_A 258 VPLLDPDAITPIYIAVRNME 277 (312) T ss_dssp EEBCSTTCEEEEEEEEETTC T ss_pred EECCCCCCEEEEEEEEECCC T ss_conf 98579886328999997999 No 80 >3fd3_A Chromosome replication initiation inhibitor protein; structural genomics, LYSR, PSI-2, protein structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str} Probab=91.36 E-value=0.44 Score=25.05 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=92.7 Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHC Q ss_conf 95899962899872487046998488988521678997629985556689889886431032211000036756754200 Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYD 120 (274) Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~ 120 (274) .+|||+++.+.- +. .-...+..+.+.-+++++++..+..+.++.+++|++|++......+ ...+ T Consensus 2 ~tlria~~~~sl----------~~---wl~P~L~~f~~~~pi~l~l~~~~~~~~~~~l~~g~~D~aI~~~~~~--~~~l- 65 (208) T 3fd3_A 2 VTLNIATNADSL----------GT---WFLDAVSKFTGGSDYLVNIAVDDQDHTVEWLRGGRVLAAVTAHDKP--VQGC- 65 (208) T ss_dssp CEEEEEECHHHH----------TT---THHHHHHHHHHTSSCEEEEEECCSSCHHHHHHTTSCSEEEESCCSC--CTTC- T ss_pred EEEEEEECHHHH----------HH---HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCCCEEEEEECCCCC--CCCE- T ss_conf 578998773878----------98---8999999999979797999994566278887579759999838999--9986- Q ss_pred CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCEEEEC-CCHH-HHHHHC-----CCCCCEEECCHHHHHHHHHHHH Q ss_conf 233322222222211122-----221111123343202310-1012-233201-----3454213368557777554432 Q gi|254781112|r 121 FSIPYIAHRVLLVVRSDQ-----QDIRSFKDLTDKTVAQIL-GTDL-SRFAKE-----LKSHLVFSHNFEQSLQLLLSKR 188 (274) Q Consensus 121 fs~p~~~~~~~~~~~~~~-----~~~~~~~dL~g~~V~~~~-g~~~-~~~l~~-----~~~~~~~~~~~~~~~~~l~~gr 188 (274) -+.++.....++++.++. ....+++||.+.++.... ++.. ..+... .......+++.....+++..|. T Consensus 66 ~~~~L~~~~~~~vasp~~~~~~~~~~~~~~dL~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 145 (208) T 3fd3_A 66 RVTPLGVLRYHATASPDFMARHFADGVTPAALARAPGLTFNQKDRLQASWIRTALGEDVSYPTHWLPSTDGFVKASLAGM 145 (208) T ss_dssp EEEEEEEEEEEEEECHHHHHHHCTTCSCHHHHTTSCEEESSTTCCHHHHHHHHHHSSCCCCCEEECCCHHHHHHHHHTTS T ss_pred EEEEEEEEEEEEEECHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHCC T ss_conf 99994602799998349998637999999999508633225666411355664147665443378888999999999399 Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC Q ss_conf 1003665589999998458766732623677687707999818 Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK 231 (274) Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 231 (274) .= .+.+...+...+.+-.. +.+.+....+.++++...+ T Consensus 146 Gi-a~lP~~~v~~~l~~g~L----v~l~p~~~~~v~ly~~~~r 183 (208) T 3fd3_A 146 GW-GLNPVQLVAEHLAAGRL----VELMPGTPLDIPLYWQVNR 183 (208) T ss_dssp CB-EEEEHHHHHHHHHHTSS----EESSTTCCEEEEEEEEECT T ss_pred CE-EECCHHHHHHHHHCCCE----EEECCCCCCEEEEEEECCC T ss_conf 47-74859999999878986----8979998661547976477 No 81 >1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1 Probab=91.13 E-value=0.039 Score=31.51 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=54.8 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH Q ss_conf 589589996289987248704699848898852167899762-998555668988988643103221100-003675675 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ 116 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~ 116 (274) +..+|+|+......|. .-++.++..++. |+++++....-...+..|.+|.+|+.. +...+++.. T Consensus 26 ~~~~i~i~gs~s~~~l--------------~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~s~~~~~~e~ 91 (290) T 1twy_A 26 QASEITISGSTSVARI--------------MDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEA 91 (290) T ss_dssp --CEEEEEECHHHHHH--------------HHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESSCCCTTTC T ss_pred CCCEEEEEECCHHHHH--------------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHH T ss_conf 4886999960549999--------------99999999988889579997168679999998268641225540013466 Q ss_pred HHHCCCCCCCCCCCCCCCCCCC---------------CCCCCCCCCCC Q ss_conf 4200233322222222211122---------------22111112334 Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQ---------------QDIRSFKDLTD 149 (274) Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~---------------~~~~~~~dL~g 149 (274) +.-.-..|+......+++.+++ ..+++|+|+.+ T Consensus 92 ~~~~~~~~ia~~~~~ivv~~~n~~~~ls~~~L~~i~~g~it~W~~~~~ 139 (290) T 1twy_A 92 QNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGG 139 (290) T ss_dssp CTTCEEEEEEEEEEEEEECTTCCCCEECHHHHHHHHHTSCCBGGGGTS T ss_pred HCCCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHCCC T ss_conf 345056778860257640577852345898985644287675310489 No 82 >1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A Probab=91.07 E-value=0.72 Score=23.70 Aligned_cols=185 Identities=10% Similarity=0.093 Sum_probs=93.5 Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CCCHHCCCCHHH--HHHHCCC--C--CCCCCCCCCCCCCC------ Q ss_conf 216789976299855566898898864310322-110000367567--5420023--3--32222222221112------ Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLDTNRY-DVLVNVAITPER--QKKYDFS--I--PYIAHRVLLVVRSD------ 137 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~-D~~~~~~~t~eR--~~~~~fs--~--p~~~~~~~~~~~~~------ 137 (274) +++++..++.|++++++.-....+...+++|.. |+++.......+ .+..... . ........+++... T Consensus 19 ~l~~~Fek~~gi~V~~~~g~s~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (233) T 1amf_A 19 DIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDF 98 (233) T ss_dssp HHHHHHHHHHCCEEEEEEECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEEEETTCCCCCC T ss_pred HHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCCCCCCC T ss_conf 99999988119779999777599999997399986899664555677775256566642452044125530342114544 Q ss_pred -CCCCCCCCCCCC-CCEEEECC--CH----HHHHHHCC------CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf -222111112334-32023101--01----22332013------454213368557777554432100366558999999 Q gi|254781112|r 138 -QQDIRSFKDLTD-KTVAQILG--TD----LSRFAKEL------KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274) Q Consensus 138 -~~~~~~~~dL~g-~~V~~~~g--~~----~~~~l~~~------~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274) ...+.++.|+.. .++++... +. ....++.. ........+..+.+..+..|+.|+.+...... T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~---- 174 (233) T 1amf_A 99 TIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDA---- 174 (233) T ss_dssp CCSTTCCHHHHHTTCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHH---- T ss_pred CCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHH---- T ss_conf 5542556986246993899899875189999999997275123230102255504778887624662874467889---- Q ss_pred HHCCCCCCCEEECCCCCCCCCEEEEEECCC-HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 845876673262367768770799981899-8999999999999997985999998767888 Q gi|254781112|r 204 ERRPHDGNLFKIADRMKDNSAVAFMMRKGN-NKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274) ............+........+.+++.++. ++.. +.+-+..-|.+-++|+.+| |-. T Consensus 175 ~~~~~~~~~~~~p~~~~~~~~~~~~i~k~~~~~~A----~~FidfllS~e~Q~i~~~~-Gf~ 231 (233) T 1amf_A 175 VASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV----KAFYDYLKGPQAAEIFKRY-GFT 231 (233) T ss_dssp HHCSSEEEEEECCGGGSCCEEEEEEEBTTCCSHHH----HHHHHHHTSHHHHHHHHHT-TCE T ss_pred HHHCCCCCEEEECCCCCEEEEEEEEEECCCCCHHH----HHHHHHHCCHHHHHHHHHC-CCE T ss_conf 87304575398579886376788999879999999----9999997899999999983-928 No 83 >3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Probab=90.66 E-value=0.76 Score=23.58 Aligned_cols=183 Identities=12% Similarity=0.068 Sum_probs=93.1 Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHHCC-CCCCCHHCCC-CHHHHHH--H-CCCCC--CCCCCCCCCCCC------C Q ss_conf 2167899762998555668988988643103-2211000036-7567542--0-02333--222222222111------2 Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLDTN-RYDVLVNVAI-TPERQKK--Y-DFSIP--YIAHRVLLVVRS------D 137 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g-~~D~~~~~~~-t~eR~~~--~-~fs~p--~~~~~~~~~~~~------~ 137 (274) ++++..-++.|++|+++...-..++..+++| ..|++++... ..++... . ....+ .......+++.. . T Consensus 39 ~i~~~Fe~~tgi~V~~~~~gs~~l~~~i~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (253) T 3gzg_A 39 EAATAYEKATGTPVRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLVAPASSKLRVD 118 (253) T ss_dssp HHHHHHHHHHSCCEEEEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEEEETTCCCCCC T ss_pred HHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCC T ss_conf 99999988429779999787599999997399965999675767888751575222430000146300244213323458 Q ss_pred CCCCCCCCCCC--CCCEEEECC--CHHH----HHHHC------CCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 22211111233--432023101--0122----33201------3454213368557777554432100366558999999 Q gi|254781112|r 138 QQDIRSFKDLT--DKTVAQILG--TDLS----RFAKE------LKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274) Q Consensus 138 ~~~~~~~~dL~--g~~V~~~~g--~~~~----~~l~~------~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274) .+...++.++. +.++++... +... ..+.. .................+..|++|+.+..... . T Consensus 119 ~~~~~~~~~~~~~~~~i~~~~p~~~~~g~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~----~ 194 (253) T 3gzg_A 119 PRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGSD----A 194 (253) T ss_dssp TTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHHH----H T ss_pred CCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEHHHH----H T ss_conf 654032886158887599968988835999999999957244413321104555400354214655377504348----9 Q ss_pred HHCCCCCCCEEECCCCCCCCCEEEEEECCC--HHHHHHHHHHHHHHHHCCHHHHHHHHHCCC Q ss_conf 845876673262367768770799981899--899999999999999798599999876788 Q gi|254781112|r 204 ERRPHDGNLFKIADRMKDNSAVAFMMRKGN--NKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274) ...........++.+......+++++.++. ++ . +.+-+..-|.+-++|+++ +|. T Consensus 195 ~~~~~~~~~~~~P~eg~~~~~~~~avvk~a~~~~-A----~~FidfllS~e~Q~ila~-~Gf 250 (253) T 3gzg_A 195 RADAKVRVVATFPDDSHDAIVYPVAALKNSNNPA-T----AAFVSWLGSKPAKAIFAR-RGF 250 (253) T ss_dssp HHCTTEEEEEECCGGGSCCEEEEEEECTTCCCTT-H----HHHHHHTTSHHHHHHHHH-TTC T ss_pred HHHCCCCEEEEECCCCCEEEEEEEEEECCCCCHH-H----HHHHHHHCCHHHHHHHHH-CCC T ss_conf 8846886599968988457787699988999999-9----999999789999999998-296 No 84 >1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A* Probab=89.17 E-value=1 Score=22.73 Aligned_cols=185 Identities=12% Similarity=0.093 Sum_probs=91.0 Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHHC----CCCCCCHHCCC-CHHHHH------------------HHC----CCC Q ss_conf 216789976299855566898898864310----32211000036-756754------------------200----233 Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLDT----NRYDVLVNVAI-TPERQK------------------KYD----FSI 123 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~-t~eR~~------------------~~~----fs~ 123 (274) +++...-++.|++|+++..++..+...+.+ ..+|++++... ...+.. .+. +.. T Consensus 20 ~l~~~FeketGIkV~~~~~~~~~~~~ki~aeg~~~~~Dv~~~~~~~~~~~~~~~gl~~~~~~~~~~~i~~~~~~~~~~~~ 99 (312) T 1xvx_A 20 SWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLDAVTQAQVAQEYRPEHGRWT 99 (312) T ss_dssp HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESSSHHHHHHHHTTCBCCCCHHHHHHBCGGGSCSSSSCE T ss_pred HHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCCEEE T ss_conf 99999888659889999898099999999638999963999887789888775152454311002222365266798089 Q ss_pred CCCCCCCCCCCCCCCC---C-CCCCCCCCC----CCEEEEC-CCHHH----------------HHHHCCCCCCEEECCHH Q ss_conf 3222222222111222---2-111112334----3202310-10122----------------33201345421336855 Q gi|254781112|r 124 PYIAHRVLLVVRSDQQ---D-IRSFKDLTD----KTVAQIL-GTDLS----------------RFAKELKSHLVFSHNFE 178 (274) Q Consensus 124 p~~~~~~~~~~~~~~~---~-~~~~~dL~g----~~V~~~~-g~~~~----------------~~l~~~~~~~~~~~~~~ 178 (274) |+.....+++.+++.- . .++++||.. .+++... +..+. ++++....++....+.. T Consensus 100 ~~~~~~~~~~yn~~~~~~~~~P~t~~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 179 (312) T 1xvx_A 100 GIAARSTVFVYNPEKISEAELPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTNFTAYKGNS 179 (312) T ss_dssp EEEEEEEEEEECTTTSCGGGSCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEECSSHH T ss_pred EEEEEEEEEEECHHHCCCCCCCCCHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC T ss_conf 99864699997100146566987899871402124210120145688998876641335679999986310441441262 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC-----CEEEEEECC--CHHHHHHHHHHHHHHHHCC Q ss_conf 777755443210036655899999984587667326236776877-----079998189--9899999999999999798 Q gi|254781112|r 179 QSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNS-----AVAFMMRKG--NNKLTRSINEILCAIHLDG 251 (274) Q Consensus 179 ~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~k~--~~~L~~~in~~l~~l~~~G 251 (274) .....+.+|+++..+.....................+..++.... .-++++.++ |++....|=+.+. |. T Consensus 180 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~I~k~s~n~~~A~~Fi~fl~----s~ 255 (312) T 1xvx_A 180 TVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWIT----GK 255 (312) T ss_dssp HHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHHHHHHHHHHHH----SH T ss_pred HHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHC----CH T ss_conf 66666647975531310547999988753213451377524688844887206999989999999999999975----99 Q ss_pred HHHHHHHH Q ss_conf 59999987 Q gi|254781112|r 252 TYKKIFDR 259 (274) Q Consensus 252 ~~~~I~~k 259 (274) +-++++.+ T Consensus 256 e~Q~~~~~ 263 (312) T 1xvx_A 256 SGQDILRT 263 (312) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999986 No 85 >1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protein structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A* Probab=88.59 E-value=0.12 Score=28.64 Aligned_cols=149 Identities=7% Similarity=0.042 Sum_probs=74.0 Q ss_pred CHHHHHHHHHCCCCCC-CHHCCCCHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC Q ss_conf 9889886431032211-000036756754200--2333222222222111222211111233432023101012233201 Q gi|254781112|r 90 AVSGLITGLDTNRYDV-LVNVAITPERQKKYD--FSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE 166 (274) Q Consensus 90 ~~~~~~~~l~~g~~D~-~~~~~~t~eR~~~~~--fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~ 166 (274) ....+-..+..|.+|+ +.|.-+-.|....+. ....|......+.++.+. .+ +..||+|+||+.-.-....+|+.+ T Consensus 69 R~~DIp~~V~~G~~DlGItG~D~l~E~~~~v~~~~~LgfG~crL~vAvP~~~-~~-~~~dl~~~rIATkYp~ltr~yf~~ 146 (304) T 1nh8_A 69 RPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAGR-NW-TTADLAGMRIATAYPNLVRKDLAT 146 (304) T ss_dssp CGGGHHHHHHHSSCSEEEEEHHHHHHHTCCEEEEEECSCCCEEEEEEEETTS-CC-CGGGGTTCEEEESCHHHHHHHHHH T ss_pred CHHHHHHHHHCCCCCEEECCHHHHHCCCCCCCHHHHCCCCCEEEEEEEECCC-CC-CHHHHCCCEEEECCHHHHHHHHHH T ss_conf 8899999997699876232145664178544514335988635899960688-77-836726989997162588777986 Q ss_pred CCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHH Q ss_conf 3454--21336855777755443210036655899999984587667326236776877079998189--9899999999 Q gi|254781112|r 167 LKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINE 242 (274) Q Consensus 167 ~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~ 242 (274) .+.+ ++......|. +...|-.|+++ |-...-..++.+... ...........-++-++. ++...+.+++ T Consensus 147 ~gi~~~iv~~~GavE~--aP~~G~AD~Iv-DivsTG~TLr~NgLk-----~i~~il~sS~alii~~~~~~~~~k~~~i~~ 218 (304) T 1nh8_A 147 KGIEATVIRLDGAVEI--SVQLGVADAIA-DVVGSGRTLSQHDLV-----AFGEPLCDSEAVLIERAGTDGQDQTEARDQ 218 (304) T ss_dssp HTCCCEEEECSSCCTH--HHHTTSCSEEE-EEESSSHHHHHTTEE-----EEEEEEEEECEEEEEEC--------CHHHH T ss_pred CCCEEEEEECCCCCEE--CCCCCCEEEEE-EECCCHHHHHHCCCE-----ECCEEHHHHHHHEEECCCCCCHHHHHHHHH T ss_conf 7982699975898065--25788030898-752667889987998-----750131012556180544688658999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781112|r 243 ILCAIH 248 (274) Q Consensus 243 ~l~~l~ 248 (274) -+..++ T Consensus 219 l~~ri~ 224 (304) T 1nh8_A 219 LVARVQ 224 (304) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 86 >3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, structural genomics, PSI-2; HET: GTT CIT; 2.41A {Wolinella succinogenes} Probab=87.39 E-value=1.2 Score=22.34 Aligned_cols=205 Identities=8% Similarity=0.015 Sum_probs=94.4 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCC--CHHHHH Q ss_conf 895899962899872487046998488988521678997629985556689889886431032211000036--756754 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAI--TPERQK 117 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~--t~eR~~ 117 (274) ..+|||.+... +. | .|+.-+|+++.-++.|++++++...-...+..+.+|..|+...... ..+..+ T Consensus 4 a~~l~i~~~~S-----~~--~-----~~l~~~l~~~Fe~~tgikV~~~~~~Sg~l~~~~~~g~~~~~~~~~~~~~~~~~~ 71 (242) T 3kn3_A 4 AAELRMATTTS-----TD--N-----TGLLDVLAPAYKKDTGVDLKWVAVGTGNALKLGENCDVDVVFVHAPKVELEYVE 71 (242) T ss_dssp CCEEEEEEEHH-----HH--H-----HTHHHHHHHHHHHHHSCEEEEEEECHHHHHHHHHTTCCSEEEECCHHHHHHHHH T ss_pred CCEEEEEEECC-----CC--C-----CCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECCCHHHHHHHH T ss_conf 75689999727-----75--2-----314999999999986977999977849999988647885543045054799987 Q ss_pred HH--CCCCCCCCCCCCCCCCCCCC-C--C-CCCCCCC----CCCEEEECCCHHHHH-----HH-C----C---CC-CCEE Q ss_conf 20--02333222222222111222-2--1-1111233----432023101012233-----20-1----3---45-4213 Q gi|254781112|r 118 KY--DFSIPYIAHRVLLVVRSDQQ-D--I-RSFKDLT----DKTVAQILGTDLSRF-----AK-E----L---KS-HLVF 173 (274) Q Consensus 118 ~~--~fs~p~~~~~~~~~~~~~~~-~--~-~~~~dL~----g~~V~~~~g~~~~~~-----l~-~----~---~~-~~~~ 173 (274) .. ....+.......++...... . . ...+++. ++.+.+..+.....+ .. . . .. .... T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (242) T 3kn3_A 72 KGFGIDRTPVMYNDFVIIGNPSFKQKFTGMSVAEAFKLIEKEQVKFVSRGDKSGTHSKEREVWKEALGKIPEKESWYIEA 151 (242) T ss_dssp HTSEEEEEEEECSCEEEEECTHHHHHHTTCCHHHHHHHHHHHTCCEEECCSSCHHHHHHHHHHHHHHSSCCTTCTTEEEC T ss_pred HCCCCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 15774123110023037752477654443114554335540572355898845999999999986346740556567764 Q ss_pred ECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC------CHHHHHHHHHHHHHH Q ss_conf 36855777755443210036655899999984587667326236776877079998189------989999999999999 Q gi|254781112|r 174 SHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG------NNKLTRSINEILCAI 247 (274) Q Consensus 174 ~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~~L~~~in~~l~~l 247 (274) .............+..+..................................+++++.++ +.+.... +-+. T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~Ak~----Fidf 227 (242) T 3kn3_A 152 GQGMLATINIAEEQKGLTLTDRGTFIKYESNHKGKPPMVIVLEGDNTLKNFYSIMAVNPKRCEKADYKGAKQ----FIDW 227 (242) T ss_dssp CSCHHHHHHHHHHTTCEEEEEHHHHHHHHHHSCSSCSCEEEECCCGGGCCEEEEEEECTTTCTTSCHHHHHH----HHHH T ss_pred CCHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHH----HHHH T ss_conf 001466777665325438998742013556633687379845889873015579998377799879699999----9999 Q ss_pred HHCCHHHHHHHHH Q ss_conf 9798599999876 Q gi|254781112|r 248 HLDGTYKKIFDRY 260 (274) Q Consensus 248 ~~~G~~~~I~~kw 260 (274) ..|.+-++|+++| T Consensus 228 llS~e~Q~iia~y 240 (242) T 3kn3_A 228 IVSEKMQAEIANF 240 (242) T ss_dssp HHSHHHHHHHHTC T ss_pred HCCHHHHHHHHHC T ss_conf 6899999999977 No 87 >1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Probab=86.97 E-value=1.4 Score=21.88 Aligned_cols=158 Identities=17% Similarity=0.106 Sum_probs=77.6 Q ss_pred HHHHHHHCCCCCCCH-HCC--CCHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCHHHH---H Q ss_conf 988643103221100-003--675675420023--33222222222111222211111233-43202310101223---3 Q gi|254781112|r 93 GLITGLDTNRYDVLV-NVA--ITPERQKKYDFS--IPYIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTDLSR---F 163 (274) Q Consensus 93 ~~~~~l~~g~~D~~~-~~~--~t~eR~~~~~fs--~p~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~~~~---~ 163 (274) ++..+|.+|++|++. ++- ++.... .+... .+--....+++.+. ..++++|. |.+||. ..-+ . T Consensus 65 ele~aLl~g~iDiAVHSlKDlP~~~~~-gl~i~av~~R~d~rD~li~~~----~~~l~~lp~g~~IGT----sS~RR~aq 135 (313) T 1gtk_A 65 ELEVALLENRADIAVHSMKDVPVEFPQ-GLGLVTICEREDPRDAFVSNN----YDSLDALPAGSIVGT----SSLRRQCQ 135 (313) T ss_dssp HHHHHHHTTSCSEEEEEGGGSCSCCCT-TEEEEEECCCCCCCEEEECSS----CSSGGGCCTTCEEEC----CCHHHHHH T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCC-CCEEEEEECCCCHHHHHCCCC----CCCHHHCCCCCEEEC----CCHHHHHH T ss_conf 999998638764897513657754699-856999956788888750376----355624899898831----88889999 Q ss_pred HHC--CCCCCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-----CCCCCCCCEEEEEECCCHH Q ss_conf 201--34542133-685577775544321003665589999998458766732623-----6776877079998189989 Q gi|254781112|r 164 AKE--LKSHLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-----DRMKDNSAVAFMMRKGNNK 235 (274) Q Consensus 164 l~~--~~~~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~k~~~~ 235 (274) ++. +..+++.. .|.+..++.|.+|++|+++....- +.+........... .+...+..+++-.++++.+ T Consensus 136 l~~~~pdl~i~~iRGNVdTRl~KL~~g~~DaiILA~AG----l~RLgl~~~~~~~l~~~~~~PA~gQGaiave~r~~d~~ 211 (313) T 1gtk_A 136 LAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAG----LKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSR 211 (313) T ss_dssp HHHHCTTSEEECCCSCHHHHHHHHHTTSCSEEEEEHHH----HHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHH T ss_pred HHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEECCH----HCCCCCCCCCEEECCCHHCCCCCCCCEEEEEECCCCHH T ss_conf 99868999377564769999999767897789864001----21012113304861602046641001256655178588 Q ss_pred H---HHHHHHHHHHHHHCCHHHHHHHHHCCCCC Q ss_conf 9---99999999999979859999987678887 Q gi|254781112|r 236 L---TRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274) Q Consensus 236 L---~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274) + ...+|..-..... ..++-+-+-+|-+- T Consensus 212 ~~~~l~~in~~~t~~~~--~aER~fL~~L~ggC 242 (313) T 1gtk_A 212 TRELLAALNHHETALRV--TAERAMNTRLEGGC 242 (313) T ss_dssp HHHHHGGGCCHHHHHHH--HHHHHHHHHHTCCT T ss_pred HHHHHHHHCCHHHHHHH--HHHHHHHHHHCCCC T ss_conf 99999874457899999--99999999858999 No 88 >1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E* Probab=86.58 E-value=0.22 Score=26.90 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=73.4 Q ss_pred CCCCCCCCHHHHHHHHHCCCCCC-CHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH Q ss_conf 85556689889886431032211-00003675675420023332222222221112222111112334320231010122 Q gi|254781112|r 83 KVEFFETAVSGLITGLDTNRYDV-LVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS 161 (274) Q Consensus 83 ~~~~~~~~~~~~~~~l~~g~~D~-~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~ 161 (274) ++++..+....+-..+..|.+|+ +.|.-+-.|....-.+..-.+..+.+-++-+........+.++++||+.-.--... T Consensus 43 ~i~~~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~~~~~l~~L~~G~c~l~vA~~~~~~~~~~~~~~rIATkYp~it~ 122 (208) T 1z7m_E 43 DLQIIFGKPNDVITFLEHGIVDIGFVGKDTLDENDFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKYPRVTK 122 (208) T ss_dssp SCCEEEECHHHHHHHHHTTSCSEEEEEHHHHHHSSCCCEEEEEEETTCCCEEEEEECGGGGGCCCSSCEEEEESCHHHHH T ss_pred CEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCEEEEECCCCCCCCHHCCCCCEEEEHHHHHHH T ss_conf 85999988899999997698762200387763167741798801257817999754001331001137588422368999 Q ss_pred HHHHCCCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCH-HHHH Q ss_conf 332013454--2133685577775544321003665589999998458766732623677687707999818998-9999 Q gi|254781112|r 162 RFAKELKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNN-KLTR 238 (274) Q Consensus 162 ~~l~~~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~L~~ 238 (274) +|+.+.+.+ ++......+. +-..|-.|+++ |-...-..++.+.. .+......... .+..++..- .-.+ T Consensus 123 ~~~~~~gi~~~ii~l~GsvE~--aP~~G~AD~Iv-DivsTG~TLk~N~L-----~~i~~i~~ssa-~li~n~~s~~~k~~ 193 (208) T 1z7m_E 123 KYFAQKQEDIEIIKLEGSVEL--GPVVGLADAIV-DIVETGNTLSANGL-----EVIEKISDIST-RMIVNKSSFKFKKD 193 (208) T ss_dssp HHHHHTTCCEEEEECSSCTTH--HHHTTSCSEEE-EEESSSHHHHTTTC-----EEEEEEEECCE-EEEEEHHHHHHHHH T ss_pred HHHHHCCCCEEEEECCCCCCC--CCCCCCEEEEE-EECCCHHHHHHCCC-----EECEEEEEEEE-EEEEECHHHHHHHH T ss_conf 999983994479967777767--67878202888-86178889998879-----98515876588-99993122055499 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254781112|r 239 SINEILCAI 247 (274) Q Consensus 239 ~in~~l~~l 247 (274) .+++.+..+ T Consensus 194 ~i~~li~~l 202 (208) T 1z7m_E 194 KIIEMVERL 202 (208) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999999 No 89 >2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, cytoplasm, histidine, magnesium; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum} Probab=85.71 E-value=0.11 Score=28.76 Aligned_cols=132 Identities=12% Similarity=0.120 Sum_probs=69.8 Q ss_pred HHHHHHHHHCCCCCC-CHHCCCCHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCHHHHHHHC Q ss_conf 889886431032211-0000367567542002--33322222222211122221111123-3432023101012233201 Q gi|254781112|r 91 VSGLITGLDTNRYDV-LVNVAITPERQKKYDF--SIPYIAHRVLLVVRSDQQDIRSFKDL-TDKTVAQILGTDLSRFAKE 166 (274) Q Consensus 91 ~~~~~~~l~~g~~D~-~~~~~~t~eR~~~~~f--s~p~~~~~~~~~~~~~~~~~~~~~dL-~g~~V~~~~g~~~~~~l~~ 166 (274) ...+-..+..|.+|+ +.|.-+-.|....+.- ...|.....++.++.+. .+.+++|+ +|+||+.-.-....+|+.+ T Consensus 54 ~~DIp~~V~~G~~DlGItG~D~l~E~~~~v~~l~dLgfG~crlvvAvP~~~-~~~~~~dl~~~~rIATkYp~it~~~~~~ 132 (289) T 2vd3_A 54 AADIPEFVADGAADLGITGYDLIVERGSDVEILEDLKYGRASLVLAAPEDS-TIRGPEDIPRGAVIATEFPGITENYLRE 132 (289) T ss_dssp TTTHHHHHHHTSSSEEEEEHHHHHHHTCCCEEEEECSCSCEEEEEEEETTS-SCCSGGGCCTTCEEEESCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCEEEHHHHHHCCCCCEEEECCCCCCEEEEEEECCCC-CCCCHHHHCCCCEEEEEHHHHHHHHHHH T ss_conf 899999998598661354304433402671571024877679999952766-5478768335848985146699999998 Q ss_pred CCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC Q ss_conf 3454--21336855777755443210036655899999984587667326236776877079998189 Q gi|254781112|r 167 LKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG 232 (274) Q Consensus 167 ~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 232 (274) .+.+ ++......+. +-.-|-.|+++ |-...-..++.+.. .+.+.....+. .+..++. T Consensus 133 ~gi~~~iv~l~GavE~--aP~lG~AD~Iv-DivsTG~TLr~NgL-----~~i~~il~ssa-~LI~n~~ 191 (289) T 2vd3_A 133 HGIDAEVVELTGSTEI--APFIGVADLIT-DLSSTGTTLRMNHL-----RVIDTILESSV-KLIANRE 191 (289) T ss_dssp TTCCCEEEECSSCGGG--TTTTTSCSEEE-EEESSTHHHHHTTE-----EEEEEEEEECE-EEEECHH T ss_pred CCCEEEEEECCCCCCC--CCCCCCCCEEE-EECCCHHHHHHCCC-----EECCCEEHEEH-HHEECCC T ss_conf 1953799965787546--87878441768-86178888998769-----87402000136-2316564 No 90 >3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Probab=85.67 E-value=1.7 Score=21.46 Aligned_cols=201 Identities=14% Similarity=0.120 Sum_probs=96.0 Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCH--------------------HHHHHHHH Q ss_conf 9589996289987248704699848898852167899762-99855566898--------------------89886431 Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAV--------------------SGLITGLD 99 (274) Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~--------------------~~~~~~l~ 99 (274) ++|+||+... |...... + .+.+.+.+.. +++++++++.- .++.+.|. T Consensus 22 k~IrIgTR~S--~LAl~Qa----~------~v~~~L~~~~p~~~~ei~~i~T~GD~~~~~~L~~~ggkG~Ftkele~aLl 89 (364) T 3ecr_A 22 RVIRVGTRKS--QLARIQT----D------SVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALE 89 (364) T ss_dssp CEEEEEECSS--HHHHHHH----H------HHHHHHHHHCTTSEEEEEEC-------------------CCHHHHHHHHH T ss_pred CEEEEEECCC--HHHHHHH----H------HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHH T ss_conf 4699995899--9999999----9------99999997589981899998546620258618874886322999999996 Q ss_pred CCCCCCCH-HCC--CCHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCHHHH---HHHC--CCC Q ss_conf 03221100-003--67567542002333-222222222111222211111233-43202310101223---3201--345 Q gi|254781112|r 100 TNRYDVLV-NVA--ITPERQKKYDFSIP-YIAHRVLLVVRSDQQDIRSFKDLT-DKTVAQILGTDLSR---FAKE--LKS 169 (274) Q Consensus 100 ~g~~D~~~-~~~--~t~eR~~~~~fs~p-~~~~~~~~~~~~~~~~~~~~~dL~-g~~V~~~~g~~~~~---~l~~--~~~ 169 (274) +|++|++. ++- +++..........+ --....+++.+++. ..+++.+|. |.+||. ..-+ .++. +.. T Consensus 90 ~g~iDiAVHSlKDlP~~~~~gl~i~a~~~R~dprD~lv~~~~~-~~~~l~~lp~ga~IGT----SS~RR~aql~~~~pdl 164 (364) T 3ecr_A 90 KNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKF-VGKTLETLPEKSVVGT----SSLRRAAQLQRKFPHL 164 (364) T ss_dssp TTSCSEEEEEGGGSCSSCCTTEEEEEECCCCCCCEEEEECTTC-TTCCTTTSCTTCEEEC----CCHHHHHHHHHHCTTS T ss_pred CCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCC-CCCCHHHCCCCCEEEC----CCHHHHHHHHHHCCCC T ss_conf 4998889872565776457876211234779825468865630-0002745799888603----7267999998867726 Q ss_pred CCEEE-CCHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC-----CCCCCCCEEEEEECCCHHHHHH--- Q ss_conf 42133-68557777554-43210036655899999984587667326236-----7768770799981899899999--- Q gi|254781112|r 170 HLVFS-HNFEQSLQLLL-SKRTDATMIPDIPFFNFLERRPHDGNLFKIAD-----RMKDNSAVAFMMRKGNNKLTRS--- 239 (274) Q Consensus 170 ~~~~~-~~~~~~~~~l~-~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~k~~~~L~~~--- 239 (274) +++.. .|.+..++.|. +|++|+++....- +.+...........+ +...+..+++-.++++.++.+. T Consensus 165 ~i~~iRGNIdTRl~KL~~~ge~DaiILA~AG----l~RLgl~~~~~~~l~~~~~~PA~gQGaiaie~r~~d~~~~~ll~~ 240 (364) T 3ecr_A 165 EFRSIRGNLNTRLRKLDEQQEFSAIILATAG----LQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGV 240 (364) T ss_dssp EEECCCSCHHHHHHHHHHSSSCSEEEEEHHH----HHHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHHHHHHHT T ss_pred CEEECCCCHHHHHHHHHCCCCCCEEEEHHHH----HHHHHHHHCCCCCCCHHHCCCCCCCCEEEEEEECCCHHHHHHHHH T ss_conf 2453258799999986334873189765667----777664220231468566176545202799980577888999887 Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 9999999997985999998767888 Q gi|254781112|r 240 INEILCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 240 in~~l~~l~~~G~~~~I~~kw~g~d 264 (274) ||..-..... ..++-+-+-+|-+ T Consensus 241 ind~~t~~~v--~aER~~L~~L~gg 263 (364) T 3ecr_A 241 LHDPETLLRC--IAERAFLRHLEGG 263 (364) T ss_dssp TCCHHHHHHH--HHHHHHHHHHC-- T ss_pred CCCHHHHHHH--HHHHHHHHHHCCC T ss_conf 1899899999--9999999983979 No 91 >3eki_A High affinity transport system protein P37; TPP, cell membrane, lipoprotein, membrane, transport protein, palmitate; HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A* 3e78_A* Probab=83.45 E-value=0.24 Score=26.63 Aligned_cols=113 Identities=9% Similarity=0.037 Sum_probs=61.1 Q ss_pred CCCCCCCCCCCCCEEEEC-----CCHHH-HHHHCC-CCC--------CEEECCHHHHHHHHHHHHHHCCCCCHHH-HHHH Q ss_conf 221111123343202310-----10122-332013-454--------2133685577775544321003665589-9999 Q gi|254781112|r 139 QDIRSFKDLTDKTVAQIL-----GTDLS-RFAKEL-KSH--------LVFSHNFEQSLQLLLSKRTDATMIPDIP-FFNF 202 (274) Q Consensus 139 ~~~~~~~dL~g~~V~~~~-----g~~~~-~~l~~~-~~~--------~~~~~~~~~~~~~l~~grvD~~~~~~~~-~~~~ 202 (274) ...++++||+++.|++.. |+.+. .+++++ +.. ......+......+.+|.+|+.+.-.-. ...| T Consensus 235 w~~K~WeDf~~~~I~~~s~SSaSGYiyP~alLkkhFgk~~~dl~~~~~~~~~~y~~s~~~vi~g~~d~~i~FdD~~s~aw 314 (403) T 3eki_A 235 WNDKDWNTFRNFGILHGKDNSSSKFKLEETILKNHFQNKFTTLNEDRSAHPNAYKQKSADTLGTLDDFHIAFSEEGSFAW 314 (403) T ss_dssp HHTTCHHHHHHTCEEECCTTCTTTTHHHHHHHHHHSTTSCSCHHHHHHHSGGGEEECCGGGGGGCTTCCEEEEETTGGGG T ss_pred HCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHHHHC T ss_conf 21289889848956986798860128899999997088855543101046664303677775046772173041133423 Q ss_pred HHH----C---CCCCCCEEEC-CCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCH Q ss_conf 984----5---8766732623-6776877079998189-98999999999999997985 Q gi|254781112|r 203 LER----R---PHDGNLFKIA-DRMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGT 252 (274) Q Consensus 203 ~~~----~---~~~~~~~~~~-~~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~ 252 (274) ... . +.....+.+. ..+..+.. .++++++ ++++++.|-+++-.|-.+|+ T Consensus 315 t~~k~~~k~~~~~~n~kVrVI~~T~pIPnD-~Isvrk~Ls~e~~~~IskAfinl~kt~e 372 (403) T 3eki_A 315 THNKSATKPFETKANEKMEALIVTNPIPYD-VGVFRKSVNQLEQNLIVQTFINLAKNKQ 372 (403) T ss_dssp SCTTCTTCTTCCCTTCEEEEEEECCCBCCC-EEEEETTBCHHHHHHHHHHHHHHHHTTC T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCC-EEEEECCCCHHHHHHHHHHHHHHHCCCC T ss_conf 220025675677777728999958887688-3899089999999999999998750678 No 92 >2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* Probab=83.22 E-value=2.1 Score=20.80 Aligned_cols=171 Identities=14% Similarity=0.155 Sum_probs=92.2 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274) .+.|+||+.+.+.. .+..+++..+.+.. ++++++...++...+..|.+|++|+......... .. T Consensus 89 ~~~l~i~~~~~~~~-------------~~l~~~l~~~~~~~P~v~i~i~~~~~~~~~~~l~~~~~Di~i~~~~~~~--~~ 153 (313) T 2h98_A 89 SQTLRIGYVSSLLY-------------GLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITD--PA 153 (313) T ss_dssp CCEEEEEECGGGGG-------------TTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCC--TT T ss_pred CCEEEEEECHHHHH-------------HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCC--CH T ss_conf 62399986105678-------------8999999999862993343211278278999974215551353035667--31 Q ss_pred HCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCEEEEC---CCH----HHHHHHCCCC---CCEEECCHHHHHH Q ss_conf 0023332222222221112222------1111123343202310---101----2233201345---4213368557777 Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQD------IRSFKDLTDKTVAQIL---GTD----LSRFAKELKS---HLVFSHNFEQSLQ 182 (274) Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~------~~~~~dL~g~~V~~~~---g~~----~~~~l~~~~~---~~~~~~~~~~~~~ 182 (274) ..+.+.......+++.++.+. --+++||.+....... +.. .+...++.+. ....+++...... T Consensus 154 -~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (313) T 2h98_A 154 -IRRIMLHKEQLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALG 232 (313) T ss_dssp -EEEEEEEEEEEEEEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHHHHHH T ss_pred -HHHHHHHHHHHEEECCCCCHHHHCCCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHH T ss_conf -3455433322034204776244335787588998089879841456764102566778863898740013498999999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCEEEEEECCC Q ss_conf 554432100366558999999845876673262-367768770799981899 Q gi|254781112|r 183 LLLSKRTDATMIPDIPFFNFLERRPHDGNLFKI-ADRMKDNSAVAFMMRKGN 233 (274) Q Consensus 183 ~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 233 (274) ++.+|..= .+.+.... ..... ....+ ...+....+++++.++.+ T Consensus 233 ~v~~g~gi-~~lP~~~~-----~~~~~-~l~~~pl~~~~~~~~i~l~~r~~~ 277 (313) T 2h98_A 233 LVAAGEGV-CIVPASAM-----DIGVK-NLLYIPILDDDAYSPISLAVRNMD 277 (313) T ss_dssp HHHTTSCB-EEEEGGGG-----GSCCT-TEEEEEBCSTTCEEEEEEEEETTC T ss_pred HHHHCCEE-EEEHHHHH-----HHHCC-CEEEEECCCCCCCEEEEEEEECCC T ss_conf 99949969-97138898-----44309-989998789986007999998998 No 93 >3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp} Probab=82.37 E-value=0.15 Score=27.92 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=25.8 Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHH----HHHHCCCC-CCC Q ss_conf 2167899762998555668988988----64310322-110 Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLI----TGLDTNRY-DVL 106 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~----~~l~~g~~-D~~ 106 (274) .+.+.+.++.|++++++..||+... ..+.+|+. |++ T Consensus 59 ~~~~~~e~~~gi~v~~~~~~~~~~~~kl~~~~asg~~PDi~ 99 (535) T 3omb_A 59 QWAKDLEADCDCKIEWQEVTREAWAQQKNATLASGDIADVN 99 (535) T ss_dssp HHHHHHHHHHTSEEEEEEEEHHHHHHHHHHHHHHTCCCSEE T ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE T ss_conf 99999986649789999789268999999999789988699 No 94 >3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens} Probab=79.87 E-value=1.8 Score=21.23 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=40.4 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH Q ss_conf 89589996289987248704699848898852167899762998555668988988643103221100 Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV 107 (274) Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~ 107 (274) +..|+|.+... +. | .|+.-+|+++.-++.|++|+++..+-..++..++++..|+++ T Consensus 4 ~~~l~i~~~~S-----~~--~-----~gl~~~l~~~Fek~tgi~V~~~~g~sg~l~~~i~~~~~~~~~ 59 (236) T 3lr1_A 4 EERLKMSTTTS-----TQ--D-----SGLLKVLLPPFEKKNNVKVDVIAVGTGQALKLGEAGDVDVVF 59 (236) T ss_dssp SCEEEEEEEHH-----HH--H-----HCHHHHHHHHHHHHHTCEEEEEEECHHHHHHHHHTTSCSEEE T ss_pred CCEEEEEEECC-----CC--C-----CHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCEEE T ss_conf 87699999768-----63--0-----113999999999984987999988879999999769987066 No 95 >3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus} Probab=75.88 E-value=3.7 Score=19.34 Aligned_cols=186 Identities=7% Similarity=0.019 Sum_probs=86.4 Q ss_pred EEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCC-CCHHHHHH-HCCC--CCCCCCCCCCCCCCCC-CCC Q ss_conf 98852167899762998555668988988643103221100003-67567542-0023--3322222222211122-221 Q gi|254781112|r 67 GFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVA-ITPERQKK-YDFS--IPYIAHRVLLVVRSDQ-QDI 141 (274) Q Consensus 67 G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~-~t~eR~~~-~~fs--~p~~~~~~~~~~~~~~-~~~ 141 (274) |+.-+|+.+.-++.|++|+++..+-..++..++++..|++.+.. ...++... .... .+.......+...... ... T Consensus 19 gl~~~l~~~Fek~tGi~V~~~~g~sg~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (237) T 3muq_A 19 GLLDYLLPQFEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKADPAKI 98 (237) T ss_dssp THHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEEEECTTCTTCC T ss_pred HHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCC T ss_conf 27999999999985987999977849999998668987588517177898875477655523454100278761463112 Q ss_pred ----CCCCCC----CCCCEEEECCC--HHH----HHHHCC------CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf ----111123----34320231010--122----332013------4542133685577775544321003665589999 Q gi|254781112|r 142 ----RSFKDL----TDKTVAQILGT--DLS----RFAKEL------KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFN 201 (274) Q Consensus 142 ----~~~~dL----~g~~V~~~~g~--~~~----~~l~~~------~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~ 201 (274) ..+.++ ....+++..+. ... .++... .............+.....+.+++.+.... .. T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 176 (237) T 3muq_A 99 KDDESVLDVFKEIANKNATFISRGDDSGTHKKEMGFWAQTKIEPNFGGYRSVGQGMGPTLNMASEMQGYTMSDRGT-WL- 176 (237) T ss_dssp TTCSSHHHHHHHHHHTTCCEEECCSCCHHHHHHHHHHHHHTCCSCSTTEEECCCCHHHHHHHHHHTTCBEEEEHHH-HH- T ss_pred CCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCCCEEEEEHHHH-HH- T ss_conf 3451256665411245427987776637899999999872565103467652101788874414563004511457-88- Q ss_pred HHHHCCCCCCCEEECCCCCCCCCEEEEEECC------CHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 9984587667326236776877079998189------9899999999999999798599999876 Q gi|254781112|r 202 FLERRPHDGNLFKIADRMKDNSAVAFMMRKG------NNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274) ..... ................+++++.++ +.+.. +.+.+...|-+-++|+++| T Consensus 177 ~~~~~--~~~~i~~~~~~~~~~~y~~~i~~~~~~~~~~~~~A----k~FvdfL~S~eaQ~iia~Y 235 (237) T 3muq_A 177 AYQNK--LDLEILFQGDEKLFNPYQVILVNPERYPTINYQGA----KAFSDWLVNPRGQELINGF 235 (237) T ss_dssp HHGGG--CSCEEEECCCGGGEEEEEEEEECTTTCTTSCHHHH----HHHHHHHHSHHHHHHHHHH T ss_pred HHCCC--CCEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHH----HHHHHHHCCHHHHHHHHHC T ss_conf 75268--74279647888642010499983756898898999----9999997899999999977 No 96 >1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1 Probab=75.02 E-value=3.9 Score=19.21 Aligned_cols=176 Identities=11% Similarity=0.042 Sum_probs=79.2 Q ss_pred HCCCCCCCCC--CCHHHHHHHHHCC-CCCCCHHCC-CCHHHHHHH------------CCCCCCCCCCCCCCCCCCCC-CC Q ss_conf 6299855566--8988988643103-221100003-675675420------------02333222222222111222-21 Q gi|254781112|r 79 RLNLKVEFFE--TAVSGLITGLDTN-RYDVLVNVA-ITPERQKKY------------DFSIPYIAHRVLLVVRSDQQ-DI 141 (274) Q Consensus 79 ~lg~~~~~~~--~~~~~~~~~l~~g-~~D~~~~~~-~t~eR~~~~------------~fs~p~~~~~~~~~~~~~~~-~~ 141 (274) +.|++|+++. -....+...+..| ++|++.+.. ...++.+.- .+..+| ....+++++++.+ .+ T Consensus 31 ~TG~~V~v~~~~ggSg~~~~~i~~g~~aDV~~~a~~~~~~~l~~~gl~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 109 (310) T 1sbp_A 31 ETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRIDKNWIKRLPDDSAPY-TSTIVFLVRKGNPKQI 109 (310) T ss_dssp HHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHHHHHHHHHTTSSCTTGGGGSHHHHCSE-EBCEEEEEETTCTTCC T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCHHHHHCCCCCEEE-EEEEEEEEECCCCCCC T ss_conf 149977999647861999999974999898985777889999977998720334303574036-6125899707985566 Q ss_pred CCCCCCCCC--CEEEEC--CCHHH-----------------------HHHHCCCCCCEEE-C-CHHHHHHHHHHHHHHCC Q ss_conf 111123343--202310--10122-----------------------3320134542133-6-85577775544321003 Q gi|254781112|r 142 RSFKDLTDK--TVAQIL--GTDLS-----------------------RFAKELKSHLVFS-H-NFEQSLQLLLSKRTDAT 192 (274) Q Consensus 142 ~~~~dL~g~--~V~~~~--g~~~~-----------------------~~l~~~~~~~~~~-~-~~~~~~~~l~~grvD~~ 192 (274) ++++||... +++... .+... .+++....+...+ . +.......+.+|++|+. T Consensus 110 ~~w~DL~~~~~k~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~v~~Ge~~~~ 189 (310) T 1sbp_A 110 HDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAEDFVKALFKNVEVLDSGARGSTNTFVERGIGDVL 189 (310) T ss_dssp CSGGGGGSTTCCEECCCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTEEECCSSHHHHHHHHHTSCCCSEE T ss_pred CCHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCCCEE T ss_conf 65787612232425416776641169999999988640377589999999986315733035766899999975987179 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEE------CCCHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 66558999999845876673262367768770799981------899899999999999999798599999876 Q gi|254781112|r 193 MIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMR------KGNNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------k~~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274) +...........+..........+.......+ ..... ..+++... .+-+...|.+-++|+.++ T Consensus 190 i~~~~~~~~~~~~~~~~~~~~v~P~~g~~~~~-~~~~~~~~~k~~~n~e~A~----~FidfLlS~egQ~i~~~~ 258 (310) T 1sbp_A 190 IAWENEALLATNELGKDKFEIVTPSESILAEP-TVSVVDKVVEKKDTKAVAE----AYLKYLYSPEGQEIAAKN 258 (310) T ss_dssp EEEHHHHHHHHHTTTTTTEEEECCSEEECBCC-EEEECHHHHHHHTCHHHHH----HHHHGGGSHHHHHHHHHT T ss_pred EEECCHHHHHHHHCCCCCEEEECCCCCCCCCC-CEEEEEHHHCCCCCHHHHH----HHHHHHCCHHHHHHHHHC T ss_conf 88511899988632688559976888776678-7699871314799999999----999996199999999985 No 97 >1h76_A Serotransferrin; iron transport, glycoprotein, metal-binding; HET: NAG; 2.15A {Sus scrofa} SCOP: c.94.1.2 c.94.1.2 PDB: 1jnf_A 2hav_A* 2hau_A* 1suv_E Probab=72.90 E-value=2.1 Score=20.86 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=69.7 Q ss_pred HHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH---HCCCCHHHHHHHCCCCCCCC-----------------CCCCC Q ss_conf 789976299855566-8988988643103221100---00367567542002333222-----------------22222 Q gi|254781112|r 74 KEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV---NVAITPERQKKYDFSIPYIA-----------------HRVLL 132 (274) Q Consensus 74 ~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~---~~~~t~eR~~~~~fs~p~~~-----------------~~~~~ 132 (274) +.+...++-+++-+. .+-..+++.+++|++|++. +..++..+ .. -.|.+. ...+. T Consensus 360 ~~~s~~~~~~i~Cv~~~s~~dCm~~I~~g~ADi~~lDg~~~y~Agk--~~--L~Pvl~E~y~~~~~~~~~~~~~~y~aVA 435 (696) T 1h76_A 360 DAWSINSGGKIECVSAENTEDCIAKIVKGEADAMSLDGGYIYIAGK--CG--LVPVLAENYKTEGENCVNTPEKGYLAVA 435 (696) T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHHHTSCCBEEECHHHHHHHHH--TT--CEEEEEEESSCCSTTGGGCCCCCEEEEE T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHH--CC--CCHHHHHHHHCCCCCCCCCCCCCEEEEE T ss_conf 9999860786699947999999999876998789978088877766--18--8023665640357632366776348999 Q ss_pred CCCCCCCCCCCCCCCCCCCEEE-----ECCCHHH-HHH-HC---------------CCC--------------------- Q ss_conf 2111222211111233432023-----1010122-332-01---------------345--------------------- Q gi|254781112|r 133 VVRSDQQDIRSFKDLTDKTVAQ-----ILGTDLS-RFA-KE---------------LKS--------------------- 169 (274) Q Consensus 133 ~~~~~~~~~~~~~dL~g~~V~~-----~~g~~~~-~~l-~~---------------~~~--------------------- 169 (274) ++++++....++++|+||+.+- ..|+... -++ .+ ++. T Consensus 436 Vvkk~s~~~~~~~~LrGkksCHtg~~~~aGw~~P~g~l~~~~~~c~~~~fF~~sC~Pgs~~~~~lc~lc~g~~~~~~~~C 515 (696) T 1h76_A 436 VVKKSSGPDLNWNNLKGKKSCHTAVDRTAGWNIPMGLLYNKINSCKFDQFFGEGCAPGSQRNSSLCALCIGSERAPGREC 515 (696) T ss_dssp EEETTSCTTCSGGGCTTCCEEESCTTCTTTTHHHHHHHHHHHCCSCHHHHSSSCBCTTSCTTSGGGTTCCCCSSSTTCTT T ss_pred EEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC T ss_conf 99557667887798579975237778620022247787547988880021377777888887530332158876777766 Q ss_pred ---CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf ---4213368557777554432100366558999999 Q gi|254781112|r 170 ---HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274) Q Consensus 170 ---~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274) .-..|.....+++-|..| .|++++.......+. T Consensus 516 ~~~~~e~Y~Gy~GA~rCL~eg-GDVAFvk~~tv~~~~ 551 (696) T 1h76_A 516 LANNHERYYGYTGAFRCLVEK-GDVAFVKDQVVQQNT 551 (696) T ss_dssp CSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHTS T ss_pred CCCCCCCCCCCCCCCEEEECC-CCEEEEECCHHHHHC T ss_conf 677666310458751232047-851476333155431 No 98 >1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A Probab=72.87 E-value=4.3 Score=18.88 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=75.6 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCC-CCCCEEEEC Q ss_conf 99855566898898864310322110000367567542002333222222222111222211---11123-343202310 Q gi|254781112|r 81 NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIR---SFKDL-TDKTVAQIL 156 (274) Q Consensus 81 g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~---~~~dL-~g~~V~~~~ 156 (274) ++.+++...+.....+.|.+|++|++.+... +-...+ .+.|+.....++++.++.+... ...++ ....+.... T Consensus 133 ~~~i~i~~~~~~~~~~~l~~g~~D~~i~~~~--~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (315) T 1uth_A 133 HIQISTLRPNAGNLKEDMESGAVDLALGLLP--ELQTGF-FQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVA 209 (315) T ss_dssp TCEEEEECTTSSCHHHHHHHTSCCEEEECCT--TCCTTE-EEEEEEEECEEEEEETTCSSCCSSCCHHHHHHSEEEEECC T ss_pred CCCEEEEEECHHHHHHHHHCCCCEEEEEECC--CCCCCC-EEEEEEEEEEEEEECCCCHHHCCCCCHHHHHHCCEEEEEC T ss_conf 7632899704488999986799529998079--999982-8999761106999628755432898836774187179855 Q ss_pred CCHH----HHHHHCCCC---CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEE Q ss_conf 1012----233201345---42133685577775544321003665589999998458766732623-677687707999 Q gi|254781112|r 157 GTDL----SRFAKELKS---HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFM 228 (274) Q Consensus 157 g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 228 (274) +... ..+++..+. ....+.+......++.+|..= .+.+...+..+... .....+. +.......+++. T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi-~~lP~~~~~~~~~~----~~l~~~~~~~~~~~~~~~l~ 284 (315) T 1uth_A 210 LNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLI-ATVPQRFAVRCEVP----FGLTTSPHPAKLPDIAINLF 284 (315) T ss_dssp TTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTSSCB-EEEEHHHHHHHTTT----TTEEEEECSSCCCCEEEEEE T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEE-EECCHHHHHHHHHC----CCEEEECCCCCCCCEEEEEE T ss_conf 98615899999997699873379528578899999809999-98019999977446----99799778988896689999 Q ss_pred EEC Q ss_conf 818 Q gi|254781112|r 229 MRK 231 (274) Q Consensus 229 ~~k 231 (274) .++ T Consensus 285 ~~~ 287 (315) T 1uth_A 285 WHA 287 (315) T ss_dssp EEG T ss_pred ECC T ss_conf 868 No 99 >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Probab=72.74 E-value=1.9 Score=21.17 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=37.6 Q ss_pred CCCCCCCCCCCEEEECCCHH-----HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 11111233432023101012-----233201345421336855777755443210036655 Q gi|254781112|r 141 IRSFKDLTDKTVAQILGTDL-----SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 141 ~~~~~dL~g~~V~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) .++.+.+++.||-++-+... ..++...+.++..+.+.+++++.+.....|+++.|. T Consensus 6 ~~~~~~lr~lrILiVDD~~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~ 66 (143) T 3m6m_D 6 LRHRARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDL 66 (143) T ss_dssp ---------CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEES T ss_pred CCHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEEC T ss_conf 0002156899799995889999999999998799999989999999997528999999838 No 100 >3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} Probab=71.20 E-value=4.7 Score=18.64 Aligned_cols=208 Identities=11% Similarity=0.057 Sum_probs=102.1 Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCC-CCCCCCCC----CHHHHHHHHHCCCCCCCHH---- Q ss_conf 85895899962899872487046998488988521678997629-98555668----9889886431032211000---- Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLN-LKVEFFET----AVSGLITGLDTNRYDVLVN---- 108 (274) Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg-~~~~~~~~----~~~~~~~~l~~g~~D~~~~---- 108 (274) ..+++|+||.. +|. + +. +...|.+.+.++.| .+++.... +-.-++.+|.+|++|+... T Consensus 6 ~~~~~I~Ig~~-~w~-----e----~~---~~a~i~~~iLe~~g~~~v~~~~~~~~g~~~~~~~al~~GdiDv~~e~w~g 72 (282) T 3o66_A 6 STKNDVKITAL-STS-----E----SQ---IISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNG 72 (282) T ss_dssp -CCCCCEEEEE-SSH-----H----HH---HHHHHHHHHHHHHTTTSCCCEEEEEESSHHHHHHHHHHTSCSEEEEEEHH T ss_pred CCCCCEEEECC-CCH-----H----HH---HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEHHCCC T ss_conf 88998899717-760-----9----99---99999999998545983488865777628999999986997184042044 Q ss_pred C---CCCH-----H--------HHH-----HHCCCCCC-CCCCCCCCCCCC---CCCCCCCCCCCC----CCEEEECCCH Q ss_conf 0---3675-----6--------754-----20023332-222222221112---222111112334----3202310101 Q gi|254781112|r 109 V---AITP-----E--------RQK-----KYDFSIPY-IAHRVLLVVRSD---QQDIRSFKDLTD----KTVAQILGTD 159 (274) Q Consensus 109 ~---~~t~-----e--------R~~-----~~~fs~p~-~~~~~~~~~~~~---~~~~~~~~dL~g----~~V~~~~g~~ 159 (274) . .+.+ + +.. .+.+-.|. ......+.+++. ...+++++||.. .++|...+.. T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~i~~i~dl~~~~~~~~~g~~~~~~ 152 (282) T 3o66_A 73 TDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWM 152 (282) T ss_dssp HHHHTTTCCCCCCSHHHHHHHHHHHHHHHHSEEECCCCSCBCCEEEEECHHHHHHHTCSBSGGGTTTGGGCEEEEEGGGC T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCEECCCCCCC T ss_conf 57776633566578799999998656532783650564323455543568786334802201001333111123475444 Q ss_pred HH------HHHHCCCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC--CCCCCCCEEEEE Q ss_conf 22------332013454--21336855777755443210036655899999984587667326236--776877079998 Q gi|254781112|r 160 LS------RFAKELKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD--RMKDNSAVAFMM 229 (274) Q Consensus 160 ~~------~~l~~~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 229 (274) .. ...+..+.. -....+......++.+|+.+++..-...... .+... ....+ ...........+ T Consensus 153 ~~~~~~~~~l~~~y~~~~~~~~~~~~a~~~~A~~~~~~~v~~~w~p~~~~--~~~~l----~~LeDp~~~~~~~~v~~~~ 226 (282) T 3o66_A 153 NRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDALNTEKLDVALGYSTDGRI--AAYDL----KVLKDDKQFFPPYAASAVA 226 (282) T ss_dssp C--CCSHHHHHHHHCCCCSEEEEECGGGHHHHHHTTSCSEEEEETTCHHH--HHTTC----EECBCTTCCSCCCBEEEEE T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHH--CCCCC----EECCCCCCCCCCCCCHHHH T ss_conf 54420356665404556655422237889999864897699804885341--14670----1337871237631110244 Q ss_pred ECC----CHHHHHHHHH--------HHHHH----HHCC-HHHHHHHHHCCCC Q ss_conf 189----9899999999--------99999----9798-5999998767888 Q gi|254781112|r 230 RKG----NNKLTRSINE--------ILCAI----HLDG-TYKKIFDRYFDKN 264 (274) Q Consensus 230 ~k~----~~~L~~~in~--------~l~~l----~~~G-~~~~I~~kw~g~d 264 (274) +++ +|++...+++ .+.+| ..+| .-++.-++|+.++ T Consensus 227 ~~~~~~~~P~v~~~l~~~~~~lt~~~l~~l~~~v~~~g~~~~~~A~~wL~~n 278 (282) T 3o66_A 227 TNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 278 (282) T ss_dssp EHHHHHHCTHHHHHHHTTTTCCCHHHHHHHHHHHHTSCCCHHHHHHHHHHHT T ss_pred HHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 0467777979999999986518999999999999875999999999999974 No 101 >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Probab=70.41 E-value=2.2 Score=20.67 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=37.8 Q ss_pred CCCCCCCCEEEECCCHH-----HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 11233432023101012-----233201345421336855777755443210036655 Q gi|254781112|r 144 FKDLTDKTVAQILGTDL-----SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 144 ~~dL~g~~V~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) ..|++|++|-++-+... ..+++..+.++..+.|..++++.+. .+.|+++.|. T Consensus 2 m~~~~g~rILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~-~~~dlii~D~ 58 (136) T 1dcf_A 2 MSNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEHKVVFMDV 58 (136) T ss_dssp CCCCTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTCSEEEEEC T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCCEEEEEC T ss_conf 99899999999939899999999999987999999899999998624-5998999945 No 102 >3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Probab=68.68 E-value=3 Score=19.90 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=70.2 Q ss_pred EHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH---HCCCCHHHHHHHCCCCCCCC-------------------- Q ss_conf 16789976299855566-8988988643103221100---00367567542002333222-------------------- Q gi|254781112|r 72 LIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV---NVAITPERQKKYDFSIPYIA-------------------- 127 (274) Q Consensus 72 l~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~---~~~~t~eR~~~~~fs~p~~~-------------------- 127 (274) -.+.+.+..+-+++-+. .+-..+++.+++|++|++. +..++. ++ +. -.|++. T Consensus 354 KC~~ls~~~~~~i~Cv~~~s~~~Cm~~I~~g~ADi~~lDg~~~y~A-~k--y~-L~pil~E~y~~~~~~~~~~~~~~~~~ 429 (687) T 3mc2_A 354 KCDQWSAVSGGALACATEETPEDCIAATMKGEADAMSLDGGFAYVA-GH--CG-LVPVLAENYLSTHSSGRLGSKCVNAP 429 (687) T ss_dssp HHHHHHHHTTTSEEEEEESSHHHHHHHHHHTSSCBEEECHHHHHHH-HH--TT-CEEEEECCBCCCSCSSCCSTTSTTCC T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH-HH--CC-CEEEEECCCCCCCCCCCCCCCCCCCC T ss_conf 9999999737887999589999999998769987898574889888-76--59-85654000046665544553102677 Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCEEE-----ECCCHHH-HHHHCC----------------CC------------- Q ss_conf ---222222111222211111233432023-----1010122-332013----------------45------------- Q gi|254781112|r 128 ---HRVLLVVRSDQQDIRSFKDLTDKTVAQ-----ILGTDLS-RFAKEL----------------KS------------- 169 (274) Q Consensus 128 ---~~~~~~~~~~~~~~~~~~dL~g~~V~~-----~~g~~~~-~~l~~~----------------~~------------- 169 (274) ...+.++++++ ...++++|+||+.+- ..|+... .++... +. T Consensus 430 ~~~y~aVAVvkk~s-~~~~~~~LrGkksCHtg~~~~aGw~~P~g~L~~~~~~~~~~~fF~~sC~pG~~~~~~lc~lc~g~ 508 (687) T 3mc2_A 430 LEGYYVVAVVKKSD-VGITWKSLQGKKSCHTAVGTSEGWNVPMGLIYDQTGSCKFDAFFSRSCAPGSDPDSPLCALCVGG 508 (687) T ss_dssp CCCEEEEEEEESSC-SCCCTTCCTTSCEEESCTTCCCCCCTHHHHHHTTSCCSCHHHHSSSEECTTSCTTSTTBSSCCCC T ss_pred CCCEEEEEEECCCC-CCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCC T ss_conf 66404899951787-66656774688432457788654234300000588864434312443367887643002433589 Q ss_pred ----------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf ----------421336855777755443210036655899999 Q gi|254781112|r 170 ----------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNF 202 (274) Q Consensus 170 ----------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~ 202 (274) .-..|....-+++-|..| .|++++.......+ T Consensus 509 ~~~~~~C~~~~~e~Y~Gy~GAlrCL~eg-GDVAFvk~~tv~~~ 550 (687) T 3mc2_A 509 NNPAHMCAANNAEGYHGSSGALRCLVEK-GDVAFMKHPTVLQN 550 (687) T ss_dssp SSTTCTTCSSSSSTTCHHHHHHHHHHHT-CSEEEECTTCSTTT T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECC-CCEEEEECCCHHHH T ss_conf 9875566666577521467664675248-70588844517764 No 103 >2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein; polyamine binding, syphilis, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Probab=68.06 E-value=5.5 Score=18.23 Aligned_cols=187 Identities=18% Similarity=0.215 Sum_probs=90.0 Q ss_pred EEHHHHHHHCCCCCCCCCCC-HHHHHHHHHCCC--CCCCH-HC-------------CCCHHHHH---------------- Q ss_conf 21678997629985556689-889886431032--21100-00-------------36756754---------------- Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETA-VSGLITGLDTNR--YDVLV-NV-------------AITPERQK---------------- 117 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~-~~~~~~~l~~g~--~D~~~-~~-------------~~t~eR~~---------------- 117 (274) +++...-++.|++|+++..+ .+.++..++.|. +|++. +. .....+.. T Consensus 39 ~~i~~Fe~~~gIkV~~~~~~~~~~~~~kl~ag~~~~Dvv~~~~~~~~~~~~~gll~~ld~~~~~~~~~i~~~~~~~~~~~ 118 (343) T 2v84_A 39 SLIKKFEQQYNVQVVYDDYASNEDMFAKLSIGASGYDLVVPSGDFVSIMKRKHLLEKIDLSKIPNVQFIKESVRARIAYD 118 (343) T ss_dssp HHHHHHHHHHTCEEEEEEESCHHHHHHHHSSSCCSCSEECCBHHHHHHHHHTTCEECCCGGGCGGGGGBCHHHHHHCTTS T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999979889999589989999999828999998997989999999779965478455410544036653133107 Q ss_pred -HHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC----CCEEEECC--CHHHH-----------------------HHH Q ss_conf -200233322222222211122--22111112334----32023101--01223-----------------------320 Q gi|254781112|r 118 -KYDFSIPYIAHRVLLVVRSDQ--QDIRSFKDLTD----KTVAQILG--TDLSR-----------------------FAK 165 (274) Q Consensus 118 -~~~fs~p~~~~~~~~~~~~~~--~~~~~~~dL~g----~~V~~~~g--~~~~~-----------------------~l~ 165 (274) .-.|.-|+.....+++.+++. ...++++||.. .+++.... ..+.. +++ T Consensus 119 ~g~~y~vP~~~~~~~l~YNkd~~~~~p~tw~~l~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~ 198 (343) T 2v84_A 119 PKMEYSVPYYLGAAGIAVNKKAVPSYARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNEQELAQAAILVTD 198 (343) T ss_dssp TTCSSCEEEEEECCEEEEETTTCCSCCSSGGGGGCGGGTTSEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHH T ss_pred CCCCEEEEEEEEEEEEEEEHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 99847878885325899863115887550888767875267666786267999999983888688998999999999998 Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCE---EEEEECC--CHHHHHHH Q ss_conf 134542133685577775544321003665589999998458766732623677687707---9998189--98999999 Q gi|254781112|r 166 ELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAV---AFMMRKG--NNKLTRSI 240 (274) Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~k~--~~~L~~~i 240 (274) ........+. ..+..+.+.+|++.+.+.-.........+.... . +....+....... ++++.|+ +++....| T Consensus 199 ~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~P~e~g~~~~~~~~~I~k~akn~e~A~~F 275 (343) T 2v84_A 199 HWKPNLVKFD-SDGYAKSFASGDFVVAHGFAEAFFAETPEAMHE-H-IDFFIPQDVASPVYVDSFCIPKGARNRDLAHAF 275 (343) T ss_dssp HTGGGEEEEC-SSSHHHHHHHTSCSEEEECHHHHHHHSCGGGGG-G-EEEECCTTTTCEEEEEEEBEETTCSCHHHHHHH T ss_pred HHCCCCCCCC-CHHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCC-C-EEEEECCCCCEEEEEEEEHHHCCCCCHHHHHHH T ss_conf 6454543256-566888986597799997089999999985399-8-589932778356444311121589999999999 Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 999999997985999998767888 Q gi|254781112|r 241 NEILCAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 241 n~~l~~l~~~G~~~~I~~kw~g~d 264 (274) =+.+ -+.+.++.+.+++|.- T Consensus 276 i~fl----lspe~q~~~~~~~g~~ 295 (343) T 2v84_A 276 INFF----LEPAHYAEFLDTFGFP 295 (343) T ss_dssp HHHH----TSHHHHHHHHHHHTCC T ss_pred HHHH----CCHHHHHHHHHHHCCC T ss_conf 9996----5999999999976789 No 104 >1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A Probab=68.06 E-value=2.5 Score=20.34 Aligned_cols=208 Identities=11% Similarity=0.074 Sum_probs=105.1 Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC--CHHHHHHHHHCCCCCCCHHCC----- Q ss_conf 8589589996289987248704699848898852167899762998555668--988988643103221100003----- Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET--AVSGLITGLDTNRYDVLVNVA----- 110 (274) Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~--~~~~~~~~l~~g~~D~~~~~~----- 110 (274) ++.++|+||. .+|+ + +. +..+|+..+.+.+|++|+.+++ +..-++.+|.+|++|+..... T Consensus 3 ~~~~~v~Ig~-~~w~-----~----~~---~~a~i~~~~Le~~Gy~Ve~~~~~~~~~~~~~al~~GdiDv~~e~w~~~~~ 69 (275) T 1sw5_A 3 QSSERVVIGS-KPFN-----E----QY---ILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYN 69 (275) T ss_dssp ---CCEEECC-CSSH-----H----HH---HHHHHHHHHHHHTTCCEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHH T ss_pred CCCCCEEEEC-CCCC-----H----HH---HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCHHHH T ss_conf 8899879967-8885-----9----99---99999999999869965998647860889999976997789730210467 Q ss_pred ----------CCHH------HHH-----HHCCCCCC-CCCCCCCCCCCC---CCCCCCCCCCCCC----CEEEECCCHH- Q ss_conf ----------6756------754-----20023332-222222221112---2221111123343----2023101012- Q gi|254781112|r 111 ----------ITPE------RQK-----KYDFSIPY-IAHRVLLVVRSD---QQDIRSFKDLTDK----TVAQILGTDL- 160 (274) Q Consensus 111 ----------~t~e------R~~-----~~~fs~p~-~~~~~~~~~~~~---~~~~~~~~dL~g~----~V~~~~g~~~- 160 (274) .++. +.. .+.+..|. ......+.+++. ...+.+++|+++. ++|...+... T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~~~~~dl~~~~~~~~~g~~~~~~~~ 149 (275) T 1sw5_A 70 VILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWAEENGVEKISDLAEFADQLVFGSDPEFASR 149 (275) T ss_dssp TTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHS T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEECHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCH T ss_conf 87764465435667789998764312677588256544685236676787421485667651010235412027764214 Q ss_pred ----HHHHHCCCC--CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC--CCCCCCEEEEEECC Q ss_conf ----233201345--4213368557777554432100366558999999845876673262367--76877079998189 Q gi|254781112|r 161 ----SRFAKELKS--HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR--MKDNSAVAFMMRKG 232 (274) Q Consensus 161 ----~~~l~~~~~--~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~ 232 (274) .......+. .-...........++.+|+..++..-...... .+... ..+-++ ..........+++. T Consensus 150 ~~~~~~~~~~~g~~~~~~~~~~~a~~~~A~~~~~~~v~~~w~P~~~~--~~~dl----~~Ledp~~~~~~~~~~~~v~~~ 223 (275) T 1sw5_A 150 PDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNKQVDVIPAYTTDSRV--DLFNL----KILEDDKGALPPYDAIIIVNGN 223 (275) T ss_dssp TTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTTSCSEEEEETTCHHH--HHTTE----EECBCTTCCSCCCEEEEEECTT T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCC--CCCCE----EECCCCCCCCCCCCCEEEECCC T ss_conf 65789888844986566434444788999865897499825887543--45772----7816886557664303676041 Q ss_pred ---CHHHHHHHH------------HHHHHHHHCC-HHHHHHHHHCCCC Q ss_conf ---989999999------------9999999798-5999998767888 Q gi|254781112|r 233 ---NNKLTRSIN------------EILCAIHLDG-TYKKIFDRYFDKN 264 (274) Q Consensus 233 ---~~~L~~~in------------~~l~~l~~~G-~~~~I~~kw~g~d 264 (274) +|+..+.++ .-...+..+| .-+++.++|+.++ T Consensus 224 ~~~~p~~~~~L~~~~~~ls~e~l~~l~~~i~~~g~~~~~~A~~Wl~~n 271 (275) T 1sw5_A 224 TAKDEKLISVLKLLEDRIDTDTMRALNYQYDVEKKDAREIAMSFLKEQ 271 (275) T ss_dssp GGGCHHHHHHHHTTTTCCCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH T ss_pred HHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 112968999999876128999999999999976999999999999976 No 105 >1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Probab=62.78 E-value=5.2 Score=18.42 Aligned_cols=127 Identities=12% Similarity=0.129 Sum_probs=74.0 Q ss_pred EHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH---HCCCCHHHHHHHCCCCCCCC-------------------- Q ss_conf 16789976299855566-8988988643103221100---00367567542002333222-------------------- Q gi|254781112|r 72 LIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV---NVAITPERQKKYDFSIPYIA-------------------- 127 (274) Q Consensus 72 l~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~---~~~~t~eR~~~~~fs~p~~~-------------------- 127 (274) -.+.+.+.++-+++-+. .+-..+++.+++|++|++. +-.++. ++ +.. .|+.. T Consensus 357 KC~~~s~~~~p~i~Cv~~~s~~~Cm~~I~~g~ADi~~lD~~~~y~A-~k--~~L-~Pv~aE~y~~~~~~~~~~~~~~~~~ 432 (689) T 1blf_A 357 KCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTA-GK--CGL-VPVLAENRKSSKHSSLDCVLRPTEG 432 (689) T ss_dssp HHHHHHHHTTSSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHH-HT--TTC-EEEEEEECCCSSCSSSCTTTSCCCC T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH-HH--CCC-EEEHHHHCCCCCCCCCCCCCCCCCC T ss_conf 9999999718974899469999999998769987897370877656-54--498-8500121355666655411146664 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEE-----ECCCHH-HHHHHC----------------CCC---------------- Q ss_conf 222222111222211111233432023-----101012-233201----------------345---------------- Q gi|254781112|r 128 HRVLLVVRSDQQDIRSFKDLTDKTVAQ-----ILGTDL-SRFAKE----------------LKS---------------- 169 (274) Q Consensus 128 ~~~~~~~~~~~~~~~~~~dL~g~~V~~-----~~g~~~-~~~l~~----------------~~~---------------- 169 (274) .-.+.++++++ ...++++|+||+.+- ..|+.. ..++.. ++. T Consensus 433 y~aVAvvkk~~-~~~~~~~LkGkksCHtg~~~~aGw~~P~g~L~~~~~~~~~~~fF~~sC~pg~~~~s~lc~lc~g~~~~ 511 (689) T 1blf_A 433 YLAVAVVKKAN-EGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQG 511 (689) T ss_dssp EEEEEEEETTS-TTCCSGGGTTSEEEESCTTCTTTTHHHHHHHHHHHTCSCGGGTSSEEECTTSCTTSTTSTTCCCSSSC T ss_pred EEEEEEECCCC-CCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC T ss_conf 27999962787-76637662688652358898443011367661588876622122565278988765321121488655 Q ss_pred -------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf -------4213368557777554432100366558999999 Q gi|254781112|r 170 -------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274) Q Consensus 170 -------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274) .-..|..+.-+++-|..|..|++++.......+. T Consensus 512 ~~~C~~~~~~~Y~Gy~GA~rCL~eg~GDVAFv~~~tv~~~~ 552 (689) T 1blf_A 512 LDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENT 552 (689) T ss_dssp CSTTCSSTTSTTCHHHHHHHHHHTTSSSEEEEEHHHHHHTS T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHC T ss_conf 55555677777655565114220388414673152066524 No 106 >2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A* Probab=61.05 E-value=3.7 Score=19.34 Aligned_cols=24 Identities=4% Similarity=-0.116 Sum_probs=13.9 Q ss_pred CCCCCC-CHHHHHHHHHCCCCCCCH Q ss_conf 555668-988988643103221100 Q gi|254781112|r 84 VEFFET-AVSGLITGLDTNRYDVLV 107 (274) Q Consensus 84 ~~~~~~-~~~~~~~~l~~g~~D~~~ 107 (274) ++++.. +.+.+..++++|++|++. T Consensus 210 i~~~~~~d~~~~~~al~~GeiD~~~ 234 (592) T 2o7i_A 210 LAHVIYKDNPSASLAFERGDIDWNG 234 (592) T ss_dssp EEEECCSSHHHHHHHHHTTCCSEEC T ss_pred EEEEEECCHHHHHHHHHCCCCCCCC T ss_conf 0257732538999999757976223 No 107 >1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A* Probab=60.21 E-value=3.8 Score=19.21 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=39.1 Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCHH Q ss_conf 958999628998724870469984889885216789976299855566-89889886431032211000 Q gi|254781112|r 41 SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLVN 108 (274) Q Consensus 41 ~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~~ 108 (274) .+|+||.. +|. .+ .+..+|+..+.+.+|++|+.+. ..-.-+..+|.+|++|+... T Consensus 8 ~tv~~~~~-~wt---------e~---~i~~ei~~~~Le~~Gy~V~~~~~~~~~~~~~al~~G~iDi~~E 63 (309) T 1r9l_A 8 ITVNPVQS-TIT---------EE---TFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAV 63 (309) T ss_dssp CEECEEEC-SCG---------GG---HHHHHHHHHHHHHTTCEECCCEECCHHHHHHHHHHTSSCEEEE T ss_pred CEEEEECC-CCC---------HH---HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEEE T ss_conf 88988417-852---------89---9999999999998699647514787399999998699759984 No 108 >2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2; 1.64A {Vibrio parahaemolyticus rimd 2210633} Probab=58.15 E-value=8.4 Score=17.11 Aligned_cols=184 Identities=13% Similarity=0.135 Sum_probs=93.6 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274) ..+.|+|++.+.+..+ |.- -.+....++- ++++++...+.. ..+..+++|+....... .. T Consensus 17 ~~~~L~i~~~~sfa~~-wL~------------P~L~~F~~~~P~I~i~l~~~~~~---~~l~~~~~Dl~I~~~~~---~~ 77 (218) T 2qsx_A 17 DQELLVVDVTPSFASL-WLV------------PNINDFHQRHPNIRVKILTGDGA---VKNIHGESDLHVRCLPL---ST 77 (218) T ss_dssp --CEEEEEECHHHHHH-THH------------HHHHHHHHHCTTCEEEEEECCSC---C-----CCSEEEEEEEC---CS T ss_pred CCCEEEEECCHHHHHH-HHH------------HHHHHHHHHCCCEEEEEEECCCH---HHCCCCEEEHHHCCCCC---CC T ss_conf 9973999818999999-999------------99999999886959999835731---21112102001004898---99 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH--HHHHHHCCCC------CCEEECCHHHHHHHHHHHHH Q ss_conf 200233322222222211122221111123343202310101--2233201345------42133685577775544321 Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTD--LSRFAKELKS------HLVFSHNFEQSLQLLLSKRT 189 (274) Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~--~~~~l~~~~~------~~~~~~~~~~~~~~l~~grv 189 (274) ....+.++.....+++.+.+-....+.+||.+...-...+.. .+.+.++.+. ....+++...++++...|.. T Consensus 78 ~~~~~~~l~~~~~~~v~s~~~~~~~~~~~l~~~~li~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~G~G 157 (218) T 2qsx_A 78 HYEYSQLLCEETLLLIGNTNLPKLSDNQAISHYPFIPQTTRPQLWEQFKQENDLECPITYHSVGFEHFYLACEAVRMEKG 157 (218) T ss_dssp CCSSEEEEEEEEEEEEEETTCC-------CTTSCBCCCTTCTTHHHHHHTCC-----CCBCSBCCSSHHHHHHHHHTTCC T ss_pred CCCEEEEECCEEEEECCCCCCCCCCCCHHHHHCEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHCCC T ss_conf 65057872101034202412132358145432035214677306888777528664555430376268899999997995 Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCEEECC-CCCCCCCEEEEEECC---CHHHHHHHHHHHHH Q ss_conf 0036655899999984587667326236-776877079998189---98999999999999 Q gi|254781112|r 190 DATMIPDIPFFNFLERRPHDGNLFKIAD-RMKDNSAVAFMMRKG---NNKLTRSINEILCA 246 (274) Q Consensus 190 D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~---~~~L~~~in~~l~~ 246 (274) = ++.+...+...+.... .+.+.. .......+++..+++ ++.++..++.-.++ T Consensus 158 i-a~lp~~~v~~~l~~g~----Lv~~~~~~~~~~~~~~lv~~~~~~~~~~v~~F~d~L~~~ 213 (218) T 2qsx_A 158 L-ALLPDFMAQFSILRGD----IQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLKDK 213 (218) T ss_dssp B-EEEEHHHHHHHHHTTS----EEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHHHH T ss_pred E-EECCHHHHHHHHHCCC----EEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 5-9546374789987899----799787445788759999818987998999999999999 No 109 >1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Probab=57.40 E-value=7.7 Score=17.33 Aligned_cols=125 Identities=11% Similarity=0.109 Sum_probs=69.5 Q ss_pred HHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCCCCH---HCCCCHHHHHHHCCCCCCC---------------------- Q ss_conf 6789976299855566-8988988643103221100---0036756754200233322---------------------- Q gi|254781112|r 73 IKEVAHRLNLKVEFFE-TAVSGLITGLDTNRYDVLV---NVAITPERQKKYDFSIPYI---------------------- 126 (274) Q Consensus 73 ~~~i~~~lg~~~~~~~-~~~~~~~~~l~~g~~D~~~---~~~~t~eR~~~~~fs~p~~---------------------- 126 (274) .+.+.+..+-.++-+. .+-..+++.+++|++|++. +-.++..+ ... .|.+ T Consensus 358 C~~ls~~~~p~i~Cv~~~s~~~Cm~~I~~g~ADi~~lDg~~~y~A~k--~~L--~pvlaE~y~~~~~~~~~~~~~~~~~~ 433 (691) T 1cb6_A 358 CNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGK--CGL--VPVLAENYKSQQSSDPDPNCVDRPVE 433 (691) T ss_dssp HHHHHHHTTTSEEEEEESSHHHHHHHHHHTSCCBEEECHHHHHHHHH--TTC--EEEEEEEECSSSSCCCCTTGGGSCCC T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHHHH--CCC--EEEHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 99999860787689806999999999876998889968288765554--388--63114443346665557642124664 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEE-----ECCCHHH-HHH-HC---------------CCC--------------- Q ss_conf 2222222111222211111233432023-----1010122-332-01---------------345--------------- Q gi|254781112|r 127 AHRVLLVVRSDQQDIRSFKDLTDKTVAQ-----ILGTDLS-RFA-KE---------------LKS--------------- 169 (274) Q Consensus 127 ~~~~~~~~~~~~~~~~~~~dL~g~~V~~-----~~g~~~~-~~l-~~---------------~~~--------------- 169 (274) ..-.+.++++++ ...++++|+||+.+- ..|+... .++ .+ ++. T Consensus 434 ~y~aVAVvkk~s-~~~~~~~LrGKksCHtg~~~~aGw~~P~g~l~~~~~~~~~~~fF~~sC~PG~~~~~~lc~lC~g~~~ 512 (691) T 1cb6_A 434 GYLAVAVVRRSD-TSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQ 512 (691) T ss_dssp CEEEEEEEESSC-TTCCGGGCTTSEEEESCTTCTTTTHHHHHHHHHHHCCCCGGGTSSEEECTTSCTTSGGGTTCCCSTT T ss_pred EEEEEEEECCCC-CCCCHHHHCCCCCCCCCCCCCCHHHCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 279999850687-6650555058865456878720121103221068886655663566646687870468986467866 Q ss_pred --------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf --------421336855777755443210036655899999 Q gi|254781112|r 170 --------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNF 202 (274) Q Consensus 170 --------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~ 202 (274) .-..|..+.-+++-|..|..|++++.......+ T Consensus 513 ~~~~C~~~~~e~YyGy~GA~rCL~eg~GDVAFv~~~tv~~~ 553 (691) T 1cb6_A 513 GENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQN 553 (691) T ss_dssp SCSTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHTT T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHH T ss_conf 66665689887652677761323048963678514205440 No 110 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=56.67 E-value=6.2 Score=17.91 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=31.6 Q ss_pred CCCCCEEEECCCHH-----HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHH Q ss_conf 33432023101012-----2332013454213368557777554432100366558 Q gi|254781112|r 147 LTDKTVAQILGTDL-----SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDI 197 (274) Q Consensus 147 L~g~~V~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~ 197 (274) |.|++|-++-+... ..++++.+.++..+.|.+++++.+...+.|+++.|.. T Consensus 5 l~g~kILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~~Al~~l~~~~~dlvi~D~~ 60 (130) T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 (130) T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEHHHHC T ss_conf 89998999969899999999999988999999899999999985289887457421 No 111 >2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Probab=55.26 E-value=5.5 Score=18.27 Aligned_cols=112 Identities=7% Similarity=0.013 Sum_probs=47.7 Q ss_pred CCCC-CCHHHHHHHHHCCCCCCC-HH------CCC--CHHHHHHHCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 5566-898898864310322110-00------036--7567542002---333222222222111222211111233432 Q gi|254781112|r 85 EFFE-TAVSGLITGLDTNRYDVL-VN------VAI--TPERQKKYDF---SIPYIAHRVLLVVRSDQQDIRSFKDLTDKT 151 (274) Q Consensus 85 ~~~~-~~~~~~~~~l~~g~~D~~-~~------~~~--t~eR~~~~~f---s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~ 151 (274) +.++ .++..+++.+.+|++|.. .. -++ |-+.-..... -.-+......++.+++. ++++++ + T Consensus 28 ~~~~~~si~~v~~av~~g~~d~gVvPiENS~~G~V~~t~D~L~~~~l~I~~E~~l~I~h~Ll~~~~~----~~~~I~--~ 101 (283) T 2qmx_A 28 EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGA----SVETAT--K 101 (283) T ss_dssp EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEEECCCEEEECSSC----CTTTCC--E T ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEEHHHHHHCCCCC----CHHHCC--E T ss_conf 1478899999999997799877999750423235667886865189807888886421385537899----978750--1 Q ss_pred EEEE-CCCH-HHHHHHCC-CCCCEEECCHHHHHHHHHHH-HHH-CCCCCHHHHHHH Q ss_conf 0231-0101-22332013-45421336855777755443-210-036655899999 Q gi|254781112|r 152 VAQI-LGTD-LSRFAKEL-KSHLVFSHNFEQSLQLLLSK-RTD-ATMIPDIPFFNF 202 (274) Q Consensus 152 V~~~-~g~~-~~~~l~~~-~~~~~~~~~~~~~~~~l~~g-rvD-~~~~~~~~~~~~ 202 (274) |-.. .... ...+++++ +...+.+.+...+...+... .-+ +++....-+..| T Consensus 102 V~SHpqal~QC~~~l~~~~~~~~~~~~sta~aa~~~~~~~~~~~AAI~s~~aa~~y 157 (283) T 2qmx_A 102 AMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELY 157 (283) T ss_dssp EEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHT T ss_pred EECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEECCHHHHHHHH T ss_conf 10388999999998986798614883487999999875166640010418898771 No 112 >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Probab=51.64 E-value=7.9 Score=17.28 Aligned_cols=103 Identities=11% Similarity=0.120 Sum_probs=57.7 Q ss_pred CCCCCCEEEECCCHH-----HHHHHCCCCCCEEECCHHHHHHHHHHHH-HHCCCCCH--------HHHHHHHHHCCCCCC Q ss_conf 233432023101012-----2332013454213368557777554432-10036655--------899999984587667 Q gi|254781112|r 146 DLTDKTVAQILGTDL-----SRFAKELKSHLVFSHNFEQSLQLLLSKR-TDATMIPD--------IPFFNFLERRPHDGN 211 (274) Q Consensus 146 dL~g~~V~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~gr-vD~~~~~~--------~~~~~~~~~~~~~~~ 211 (274) .|+|+||-++-+... ..+++..+.++..+.|..+++..+..+. .|+++.|. ......+++.+.... T Consensus 2 slk~~rILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~dlillD~~mp~g~dG~e~~~~ir~~~~~Pv 81 (140) T 3h5i_A 2 SLKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140) T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCE T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCE T ss_conf 98999999995989999999999998799999989899999999846999899972665335789999999985699989 Q ss_pred CEEECCC-C------CCCCCEEEEEECCC-HHHHHHHHHHHHHHH Q ss_conf 3262367-7------68770799981899-899999999999999 Q gi|254781112|r 212 LFKIADR-M------KDNSAVAFMMRKGN-NKLTRSINEILCAIH 248 (274) Q Consensus 212 ~~~~~~~-~------~~~~~~~~~~~k~~-~~L~~~in~~l~~l~ 248 (274) ++..... . .......+..++-+ .+|...++.+|..-+ T Consensus 82 I~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 126 (140) T 3h5i_A 82 VFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140) T ss_dssp EEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 999899999999999987999899898999999999999999988 No 113 >1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} SCOP: c.94.1.1 Probab=50.65 E-value=6.4 Score=17.84 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=8.9 Q ss_pred ECCHHHHHHHHHHHHHHCC Q ss_conf 3685577775544321003 Q gi|254781112|r 174 SHNFEQSLQLLLSKRTDAT 192 (274) Q Consensus 174 ~~~~~~~~~~l~~grvD~~ 192 (274) +.+.+..+.++.+|++|++ T Consensus 218 ~~~~~~~~~al~~G~vD~~ 236 (547) T 1vr5_A 218 VLSNNVAVGMLMKGELDWS 236 (547) T ss_dssp CSCHHHHHHHHHHTSCCEE T ss_pred ECCCHHHHHHHHCCCCCEE T ss_conf 2460677899860665244 No 114 >1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A* Probab=49.84 E-value=6.1 Score=17.95 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=10.1 Q ss_pred CHHHHHHHHHCCCCCCCH Q ss_conf 988988643103221100 Q gi|254781112|r 90 AVSGLITGLDTNRYDVLV 107 (274) Q Consensus 90 ~~~~~~~~l~~g~~D~~~ 107 (274) +.+.++.++++|++|++. T Consensus 202 ~~~~~~~a~~~g~~D~~~ 219 (529) T 1zu0_A 202 NNDQLLGKIVNSELDWTS 219 (529) T ss_dssp SHHHHHHHHHTTCCSEEC T ss_pred CHHHHHHHHHCCCEEEEC T ss_conf 205677777537564412 No 115 >2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 1zlq_A* 3dp8_A* 3e3k_A* 1uiu_A 1uiv_A Probab=49.79 E-value=4.3 Score=18.88 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=37.6 Q ss_pred CCEEECCHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHH Q ss_conf 4213368557777554432100366558----99999984587667326236776877079998189-----98999999 Q gi|254781112|r 170 HLVFSHNFEQSLQLLLSKRTDATMIPDI----PFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSI 240 (274) Q Consensus 170 ~~~~~~~~~~~~~~l~~grvD~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~i 240 (274) .+..+.+....+.++.+|++|.+..... ....-....+. ..... .+ .....++.++.. ++.++..| T Consensus 195 ~~~~~~~~~~~~~~l~~G~vd~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~~~~~N~~~~~~~d~~vRqAi 269 (502) T 2noo_A 195 TFNVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPA---YHTQL-SQ-PIETVMLALNTAKAPTNELAVREAL 269 (502) T ss_dssp EEEECCSHHHHHHHHHHSSCCEEEESTTTSCHHHHHHHHHCTT---SEEEE-CS-CCCEEEEEECTTSTTTTSHHHHHHH T ss_pred EEEEECCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCC---CCCCC-CC-CCCCEEECCCCCCCCCCCHHHHHHH T ss_conf 9998588999999986797558815666687777777761777---52001-34-5442022145667756799999999 Q ss_pred HHHHHHHHHCCHHHHHHHHHCC Q ss_conf 9999999979859999987678 Q gi|254781112|r 241 NEILCAIHLDGTYKKIFDRYFD 262 (274) Q Consensus 241 n~~l~~l~~~G~~~~I~~kw~g 262 (274) ..+|. .++|.+..++ T Consensus 270 ~~aid-------r~~i~~~~~~ 284 (502) T 2noo_A 270 NYAVN-------KKSLIDNALY 284 (502) T ss_dssp HHHCC-------HHHHHHHHTT T ss_pred HHHHC-------HHHHHHHHHC T ss_conf 98648-------8999888606 No 116 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=48.92 E-value=10 Score=16.59 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=15.6 Q ss_pred HHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 20134542133685577775544321003665 Q gi|254781112|r 164 AKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 164 l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) ++..+.++..+.+.++++..+...+.|+++.| T Consensus 27 L~~~g~~v~~a~~~~~Al~~l~~~~~dliilD 58 (154) T 2rjn_A 27 IKRLGCNIITFTSPLDALEALKGTSVQLVISD 58 (154) T ss_dssp HHTTTCEEEEESCHHHHHHHHTTSCCSEEEEE T ss_pred HHHCCCEEEEECCHHHHHHHHHCCCCCEEEEC T ss_conf 99879989998999999999862899889966 No 117 >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Probab=48.22 E-value=12 Score=16.22 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=27.4 Q ss_pred CCCCCEEEECCCH-----HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 3343202310101-----2233201345421336855777755443210036655 Q gi|254781112|r 147 LTDKTVAQILGTD-----LSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 147 L~g~~V~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) +...+|-++-+.. ...+++..+.++..+.|..+++..+...+.|+++.|. T Consensus 8 ~~pl~VLiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~dlii~D~ 62 (140) T 3c97_A 8 IMPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDI 62 (140) T ss_dssp --CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECT T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC T ss_conf 9999899993989999999999998799999989999999998707998899947 No 118 >2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str} Probab=46.16 E-value=5.5 Score=18.25 Aligned_cols=82 Identities=7% Similarity=0.020 Sum_probs=45.3 Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHH Q ss_conf 2133685577775544321003665-5899999984587667326236776877079998189-----989999999999 Q gi|254781112|r 171 LVFSHNFEQSLQLLLSKRTDATMIP-DIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEIL 244 (274) Q Consensus 171 ~~~~~~~~~~~~~l~~grvD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l 244 (274) +..+.+......+|.+|++|.+-.. .......+...+... +... ......++.++.. ++.++..|..+| T Consensus 252 ~~~~~d~~~~~~al~~GevD~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~l~~N~~~~~~~D~~vRqAl~~aI 326 (621) T 2grv_A 252 FRRGGAPAALADSIRNGDTQVAQVHGGAATFAQLSAIPDVR--TARI---VTPRVMQLTLRAQQPKLADPQVRKAILGLI 326 (621) T ss_dssp EEECCSHHHHHHHHHHTSCCEEEECCCHHHHHHHHTSTTCE--EEEE---EEEEEEEEEECTTSGGGCSHHHHHHHHHTS T ss_pred EEEECCCHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCE--EEEC---CCCCEEEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 24402415678876526632322277577799876215824--8972---676268852444554446499999999723 Q ss_pred HHHHHCCHHHHHHHHHCCCC Q ss_conf 99997985999998767888 Q gi|254781112|r 245 CAIHLDGTYKKIFDRYFDKN 264 (274) Q Consensus 245 ~~l~~~G~~~~I~~kw~g~d 264 (274) .. ++|.+..+|.. T Consensus 327 Dr-------~~i~~~~~g~~ 339 (621) T 2grv_A 327 DV-------DLLASVGAGDD 339 (621) T ss_dssp CH-------HHHHHHHHCSS T ss_pred CH-------HHHHHHHCCCC T ss_conf 99-------99999865677 No 119 >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Probab=43.38 E-value=5 Score=18.49 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=5.9 Q ss_pred HHHHHHHHHHHCCCCCH Q ss_conf 77755443210036655 Q gi|254781112|r 180 SLQLLLSKRTDATMIPD 196 (274) Q Consensus 180 ~~~~l~~grvD~~~~~~ 196 (274) +-+.|..| +|-++.+. T Consensus 353 A~~ll~~G-adKV~inS 368 (555) T 1jvn_A 353 ASLYFRSG-ADKVSIGT 368 (555) T ss_dssp HHHHHHHT-CSEEEECH T ss_pred HHHHHHCC-CCEEEECH T ss_conf 99999779-98799883 No 120 >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} Probab=43.37 E-value=13 Score=15.96 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=49.4 Q ss_pred CCCCCEEEECCCHH-----HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHCCCCCC--C Q ss_conf 33432023101012-----233201345421336855777755443210036655-------899999984587667--3 Q gi|254781112|r 147 LTDKTVAQILGTDL-----SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD-------IPFFNFLERRPHDGN--L 212 (274) Q Consensus 147 L~g~~V~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~-------~~~~~~~~~~~~~~~--~ 212 (274) -++.||-++-+... ...++..+.++..+.+..+++..+...+.|+++.|. ......+++.+.... . T Consensus 6 ~~~~rILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~~~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPi 85 (147) T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPV 85 (147) T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCE T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCE T ss_conf 99988999979999999999999987999999899999999998379999998599999975189999984855689718 Q ss_pred EEECCCCC--------CCCCEEEEEECCC-HHHHHHHHHHHHHH Q ss_conf 26236776--------8770799981899-89999999999999 Q gi|254781112|r 213 FKIADRMK--------DNSAVAFMMRKGN-NKLTRSINEILCAI 247 (274) Q Consensus 213 ~~~~~~~~--------~~~~~~~~~~k~~-~~L~~~in~~l~~l 247 (274) +.+..... ......+..++-+ .+|...++..|... T Consensus 86 I~lS~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 129 (147) T 2zay_A 86 IALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147) T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 99726899999999998799889979999999999999999987 No 121 >2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, periplasmic binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A Probab=43.30 E-value=14 Score=15.72 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=37.7 Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHH----CCCCCCCH Q ss_conf 7885895899962899872487046998488988521678997629985556689889886431----03221100 Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLD----TNRYDVLV 107 (274) Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~----~g~~D~~~ 107 (274) ...+.++|+|-...++.. +-++++..-++.|++|+++..+++.++..+. ++.+|++. T Consensus 14 ~~~~~~~l~v~~~~~~~~---------------~~~l~~~Fek~tGIkV~~~~~~~~~~~~kl~a~~~~~~~Dvv~ 74 (334) T 2pt1_A 14 TPGEQQEINLYSSRHYNT---------------DNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLL 74 (334) T ss_dssp ----CCEEEEEESCCCTT---------------HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHGGGCCCCEEE T ss_pred CCCCCCEEEEEECCCCCC---------------HHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCCEEE T ss_conf 777689899997998552---------------5999999999869879999798499999999648999985899 No 122 >3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Probab=42.71 E-value=14 Score=15.81 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=17.6 Q ss_pred CCCCCC-CCHHHHHHHHHCCCCCC Q ss_conf 855566-89889886431032211 Q gi|254781112|r 83 KVEFFE-TAVSGLITGLDTNRYDV 105 (274) Q Consensus 83 ~~~~~~-~~~~~~~~~l~~g~~D~ 105 (274) ++++++ .++..+++.+.+|++|. T Consensus 31 ~~~~vp~~s~~evf~aV~~g~~d~ 54 (313) T 3mwb_A 31 DATRIPCTNVNTALERVRAGEADA 54 (313) T ss_dssp GSEEEEESSHHHHHHHHHTTSCSE T ss_pred CCEEECCCCHHHHHHHHHCCCCCE T ss_conf 744766799999999997799877 No 123 >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Probab=42.30 E-value=13 Score=16.03 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=15.2 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 320134542133685577775544321003665 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) +++..+.++..+.+..++++.+...+.|+++.| T Consensus 22 ~L~~~G~~v~~a~~g~eAl~~l~~~~~dlillD 54 (127) T 3i42_A 22 LLEMLGFQADYVMSGTDALHAMSTRGYDAVFID 54 (127) T ss_dssp HHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEE T ss_pred HHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEC T ss_conf 999879999998999999999980899999862 No 124 >1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1 Probab=41.50 E-value=3.8 Score=19.22 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=65.4 Q ss_pred CCHHHHHHHHHCCCCCC-CHHCCCCHHHHHHHC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHH Q ss_conf 89889886431032211-000036756754200-2-33322222222211122221111123343202310101223320 Q gi|254781112|r 89 TAVSGLITGLDTNRYDV-LVNVAITPERQKKYD-F-SIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAK 165 (274) Q Consensus 89 ~~~~~~~~~l~~g~~D~-~~~~~~t~eR~~~~~-f-s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~ 165 (274) +....+-..+..|.+|+ +.|.-+-.|....+. . ..+|-.....+..+. .+...++||+.-.-....+|+. T Consensus 52 ~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~v~~l~dL~fG~crl~va~~~-------~~~~~~~rIATkYpnit~~~~~ 124 (206) T 1ve4_A 52 LRNKDVPIYVDLGIAEIGVVGKDVLLDSGRDLFEPVDLGFGACRLSLIRRP-------GDTGPIRRVATKYPNFTARLLK 124 (206) T ss_dssp ECGGGHHHHHHTTSSSEEEEEHHHHHHCCSCCEEEEECCCSCEEEEEEECT-------TCCSCCCEEEESCHHHHHHHHH T ss_pred ECHHHHHHHHHCCCCCEEECCHHHHHHCCCCCCEEEEEEEECEEEEEEEEC-------CCCCCCCEEEEHHHHHHHHHHH T ss_conf 774769999984987520021666651389862774357866699999860-------5468740542026999999999 Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHH-HHHHHHHHH Q ss_conf 1345421336855777755443210036655899999984587667326236776877079998189989-999999999 Q gi|254781112|r 166 ELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNK-LTRSINEIL 244 (274) Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-L~~~in~~l 244 (274) +.+.+...+...-..-.+-..|-+|+++ |-...-..++.+.. .+........ -.+..++..-. -.+.+++.+ T Consensus 125 ~~gi~~~ii~l~GsvE~ap~~g~AD~Iv-Div~TG~TLk~N~L-----~~i~~Il~s~-a~LI~n~~s~~~k~~~i~~li 197 (206) T 1ve4_A 125 ERGWAADVVELSGNIELAAVTGLADAVV-DVVQTGATLRAAGL-----VEVEVLAHST-ARLVVNRQALKLKRAVLKPLI 197 (206) T ss_dssp HTTCCCEEEECSSCTHHHHHTTSSSEEE-EEESSSHHHHHTTC-----EEEEEEEEEC-EEEEECHHHHHHTHHHHHHHH T ss_pred HCCCCCEEEECCCCCCCCCCCCCCEEEE-EEECCHHHHHHCCC-----EEEEEEEEEE-EEEEEECHHHHHHHHHHHHHH T ss_conf 7499724996868603546788510899-98468999998799-----7515898648-999990256677699999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254781112|r 245 CAIH 248 (274) Q Consensus 245 ~~l~ 248 (274) ..++ T Consensus 198 ~~l~ 201 (206) T 1ve4_A 198 QRLR 201 (206) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 125 >1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 1qvs_A 2o6a_A 2o68_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A Probab=41.48 E-value=15 Score=15.47 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=89.2 Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHH----CCCCCCCHHCCC-CHHHH-HH-HC----------------C------ Q ss_conf 21678997629985556689889886431----032211000036-75675-42-00----------------2------ Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLD----TNRYDVLVNVAI-TPERQ-KK-YD----------------F------ 121 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~----~g~~D~~~~~~~-t~eR~-~~-~~----------------f------ 121 (274) +|+++.-++.|++|+++..+...++..++ +..+|++.+... ...+. +. +. + T Consensus 15 ~i~~~Fe~~tGIkV~~~~~~~~~~~~kl~aeg~~~~~DV~~~~~~~~~~~~~~~gll~~~~~~~~~~~~~~~~~~~~~~~ 94 (309) T 1nnf_A 15 AVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQQTAQKGVPLAPKKD 94 (309) T ss_dssp HHHHHHHHHSCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESCGGGHHHHHHTTCBCCCCHHHHHTTCCTTCCCCTTSC T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 99999988559779999897099999999746899987899687899999986798664442334221022124466762 Q ss_pred CCCCCCCCCCCCCCCCC----CCCCCCCCCCC----CCEEEECCCH--H---------------HHHHHCCCCCCEEECC Q ss_conf 33322222222211122----22111112334----3202310101--2---------------2332013454213368 Q gi|254781112|r 122 SIPYIAHRVLLVVRSDQ----QDIRSFKDLTD----KTVAQILGTD--L---------------SRFAKELKSHLVFSHN 176 (274) Q Consensus 122 s~p~~~~~~~~~~~~~~----~~~~~~~dL~g----~~V~~~~g~~--~---------------~~~l~~~~~~~~~~~~ 176 (274) ..|+......+...++. ....+++||.. .+++....+. . ..+++....+...+.+ T Consensus 95 ~~~~~~~~~~~~yn~~~~~~~~~p~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 174 (309) T 1nnf_A 95 WIALSGRSRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAK 174 (309) T ss_dssp CEEEEEEEEEEEEETTTCCGGGSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEECSS T ss_pred EEEEEEEEEEEEEEHHHCCCCCCCCCHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC T ss_conf 78877412578752333035445466887416053203334775301677777898850738899999998753101147 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCC-CCC----CEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 55777755443210036655899999984587667326236776-877----079998189--98999999999999997 Q gi|254781112|r 177 FEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMK-DNS----AVAFMMRKG--NNKLTRSINEILCAIHL 249 (274) Q Consensus 177 ~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~k~--~~~L~~~in~~l~~l~~ 249 (274) ....++.+.+|++++.+........................... ... .-++++.++ |++....|=+.|. T Consensus 175 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~aI~k~a~n~~~A~~Fi~fll---- 250 (309) T 1nnf_A 175 NSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQKFVDFLA---- 250 (309) T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGGGCEEEEEEEEBTTCSCHHHHHHHHHHHH---- T ss_pred CHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHC---- T ss_conf 6699999975877641014057777764013333444211122368873223321120279998999999999845---- Q ss_pred CCHHHHHHHHHCC Q ss_conf 9859999987678 Q gi|254781112|r 250 DGTYKKIFDRYFD 262 (274) Q Consensus 250 ~G~~~~I~~kw~g 262 (274) |-+.++++.+=.+ T Consensus 251 s~e~Q~~~a~~~~ 263 (309) T 1nnf_A 251 SKKGQEALVAARA 263 (309) T ss_dssp SHHHHHHHHHHSC T ss_pred CHHHHHHHHHHCC T ss_conf 9999999997345 No 126 >1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Probab=41.42 E-value=15 Score=15.47 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=86.9 Q ss_pred EEHHHHHHHCCCCCCCCCCC-HHHHHHHHH---CCCCCCCH-HCCCCHHHH----------------H---------H-- Q ss_conf 21678997629985556689-889886431---03221100-003675675----------------4---------2-- Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETA-VSGLITGLD---TNRYDVLV-NVAITPERQ----------------K---------K-- 118 (274) Q Consensus 71 dl~~~i~~~lg~~~~~~~~~-~~~~~~~l~---~g~~D~~~-~~~~t~eR~----------------~---------~-- 118 (274) ++++...++.|++|+++..+ .+.+...++ .+.+|++. +.....+-. . . T Consensus 18 ~ii~~Fek~~gi~V~~~~~~~~~~~~~~~~a~~~~~~Dvv~~~~~~~~~~~~~g~~~~ld~~~~~~~~~~~~~~~~~~~~ 97 (325) T 1pot_A 18 GLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFD 97 (325) T ss_dssp THHHHHHHHHCEEEEEEEESCHHHHHHHHTTCSSSCSSBBCCBGGGHHHHHHHTCBCCCCTTSCTTGGGBCGGGSCCTTS T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHCCCCC T ss_conf 99999999969989999689999999999806999984999486899999976952135500044500028777504458 Q ss_pred --HCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCC----CEEEECCC--HH-H--HH-------------------HH Q ss_conf --00233322222222211122---221111123343----20231010--12-2--33-------------------20 Q gi|254781112|r 119 --YDFSIPYIAHRVLLVVRSDQ---QDIRSFKDLTDK----TVAQILGT--DL-S--RF-------------------AK 165 (274) Q Consensus 119 --~~fs~p~~~~~~~~~~~~~~---~~~~~~~dL~g~----~V~~~~g~--~~-~--~~-------------------l~ 165 (274) -.+..|+.....+++.+++. ...+++.||-.. +++..... .. . .. .+ T Consensus 98 ~g~~~~vP~~~~~~~l~Yn~d~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (325) T 1pot_A 98 PNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELK 177 (325) T ss_dssp TTCSSCEEEEEEEEEEEEETTTSCTTTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHH T ss_pred CCCCEEEEEEEEECCEEECHHHCCCCCCCCHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 99836999975412123216442887657688845877569750147620178999998623534577577778999998 Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHH Q ss_conf 1345421336855777755443210036655899999984587667326236776877079998189--98999999999 Q gi|254781112|r 166 ELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEI 243 (274) Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~ 243 (274) ... .........+..+.+.+|++...+......... .... ....+....+......-++++.++ +++++..+=+. T Consensus 178 ~~~-~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~G~~~~~~~~~i~k~s~~~e~A~~fi~~ 254 (325) T 1pot_A 178 KLM-PNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVA-RQAG-TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINF 254 (325) T ss_dssp HTG-GGEEEECSSCTHHHHHTTSCSEEEEEHHHHHHH-HTTS-CCEEEECCTTCCEEEEEEEBCBTTCTTHHHHHHHHHH T ss_pred HHH-HCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHH-HHCC-CCEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHH T ss_conf 862-202201405677887606524588610668999-7427-9803994368860544546877899998999999999 Q ss_pred HHHHHHCCHHHHHHHHHCCC Q ss_conf 99999798599999876788 Q gi|254781112|r 244 LCAIHLDGTYKKIFDRYFDK 263 (274) Q Consensus 244 l~~l~~~G~~~~I~~kw~g~ 263 (274) + -|.+.++.+.++.|. T Consensus 255 l----~S~e~q~~~~~~~g~ 270 (325) T 1pot_A 255 L----LRPDVAKQVAETIGY 270 (325) T ss_dssp H----HSHHHHHHHHHHHCC T ss_pred H----HHHHHHHHHHHHHCC T ss_conf 8----349999999997388 No 127 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=39.98 E-value=14 Score=15.74 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=35.9 Q ss_pred CCCCCCEEEECCCHH-----HHHHHCCC--CCCEEECCHHHHHHHHHHHHHHCCCCCHH Q ss_conf 233432023101012-----23320134--54213368557777554432100366558 Q gi|254781112|r 146 DLTDKTVAQILGTDL-----SRFAKELK--SHLVFSHNFEQSLQLLLSKRTDATMIPDI 197 (274) Q Consensus 146 dL~g~~V~~~~g~~~-----~~~l~~~~--~~~~~~~~~~~~~~~l~~grvD~~~~~~~ 197 (274) .|+|+||-++-+... ..++++.+ .++..+.+.++++..+...+.|+++.|.. T Consensus 2 sl~~krILlVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~ 60 (144) T 3kht_A 2 SLRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG 60 (144) T ss_dssp ---CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCC T ss_conf 98899899995899999999999996899829999899999999997179999998699 No 128 >2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Probab=38.66 E-value=4.8 Score=18.60 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=36.5 Q ss_pred HHHHCCC-CCCEEE-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHH Q ss_conf 3320134-542133-68557777554432100366558999999845876673262367768770799981899899999 Q gi|254781112|r 162 RFAKELK-SHLVFS-HNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRS 239 (274) Q Consensus 162 ~~l~~~~-~~~~~~-~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~ 239 (274) +++++.+ .++.+- -+.++...+...|++|=+++.... ..+.++...-.....+.+.--+..+++... T Consensus 276 ela~~~g~i~V~Er~i~~~eL~~A~~~~~~dEvF~tgTa-----------~~I~PV~~I~~~~~~~~ig~g~~Gp~vt~~ 344 (365) T 2a1h_A 276 DMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTA-----------CQVCPVHRILYKDRNLHIPTMENGPELILR 344 (365) T ss_dssp HHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETT-----------TEEEEEEEEEETTEEEECTTGGGTTHHHHH T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEEECCCC-----------CEEEEEEEEEECCCEEEECCCCCCHHHHHH T ss_conf 999974996589816899999977655996089986777-----------299999999857955893899814999999 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254781112|r 240 INEILCAIH 248 (274) Q Consensus 240 in~~l~~l~ 248 (274) +.+.+..+. T Consensus 345 L~~~l~~iq 353 (365) T 2a1h_A 345 FQKELKEIQ 353 (365) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999988876 No 129 >1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ... Probab=37.66 E-value=8.7 Score=17.02 Aligned_cols=80 Identities=9% Similarity=0.024 Sum_probs=40.6 Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHH Q ss_conf 2133685577775544321003665589-9999984587667326236776877079998189-----989999999999 Q gi|254781112|r 171 LVFSHNFEQSLQLLLSKRTDATMIPDIP-FFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEIL 244 (274) Q Consensus 171 ~~~~~~~~~~~~~l~~grvD~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l 244 (274) +..+.+....+.++.+|++|.+...... ........... .+... + ......+.++.. +++++.+|..+| T Consensus 223 ~~~~~d~~~~~~al~~Ge~D~~~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~N~~~~~~~d~~vRqAi~~ai 297 (517) T 1jet_A 223 YLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPN--EVRVD--P-YLCTYYYEINNQKAPFNDVRVRTALKLAL 297 (517) T ss_dssp EECCCCHHHHHHHHHTTSCSBCCSCCCTTTHHHHHHHSGG--GEEEE--E-EEEEEEEEECTTSTTTTSHHHHHHHHHHS T ss_pred EEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC--EEEEC--C-CCCEEHHHCCCCCCCCCCHHHHHHHHHCC T ss_conf 5640568999999977996330466827777654025785--58734--7-63200011045678667799999998621 Q ss_pred HHHHHCCHHHHHHHHHCC Q ss_conf 999979859999987678 Q gi|254781112|r 245 CAIHLDGTYKKIFDRYFD 262 (274) Q Consensus 245 ~~l~~~G~~~~I~~kw~g 262 (274) . .++|.+..++ T Consensus 298 d-------r~~i~~~~~~ 308 (517) T 1jet_A 298 D-------RDIIVNKVKN 308 (517) T ss_dssp C-------HHHHHHTTTC T ss_pred C-------HHHHHHHHHC T ss_conf 7-------9999999856 No 130 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=36.58 E-value=9.1 Score=16.89 Aligned_cols=155 Identities=13% Similarity=0.198 Sum_probs=80.7 Q ss_pred EEHHHHHHHCC--CCCCCCCCCHHHHHH----HHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 21678997629--985556689889886----431032211000036756754200233322222222211122221111 Q gi|254781112|r 71 DLIKEVAHRLN--LKVEFFETAVSGLIT----GLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSF 144 (274) Q Consensus 71 dl~~~i~~~lg--~~~~~~~~~~~~~~~----~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~ 144 (274) ++++.++.... .+++.....++..+. .+..|.+|++.+-.-|.+.-+.. ++.|.. -+.-.+.+-++.+ T Consensus 26 ~l~~~i~~e~~~~a~i~v~~~~~edav~~~~~~~~~~~~DviISRG~ta~~Ir~~-~~iPVV-----eI~vs~~Dil~aL 99 (225) T 2pju_A 26 ELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSR-LSVPVI-----LIKPSGYDVLQFL 99 (225) T ss_dssp HHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTT-CSSCEE-----EECCCHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHH-CCCCEE-----EEECCHHHHHHHH T ss_conf 9999999974467569998274789999999998649986999685689999985-899889-----9707876899999 Q ss_pred CCCC--CCCEEEECCCHHH----HHHH--CCCCCCEEECCHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCE Q ss_conf 1233--4320231010122----3320--1345421336855---77775544321003665589999998458766732 Q gi|254781112|r 145 KDLT--DKTVAQILGTDLS----RFAK--ELKSHLVFSHNFE---QSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLF 213 (274) Q Consensus 145 ~dL~--g~~V~~~~g~~~~----~~l~--~~~~~~~~~~~~~---~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~ 213 (274) ...+ +.+||++.-.... .+-. ........+.+.+ +.++.+...-+|+++++.... .+..+.+.. T Consensus 100 ~~a~~~~~kIavVgf~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG~~~~~-~~A~~~Gl~---- 174 (225) T 2pju_A 100 AKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLIT-DLAEEAGMT---- 174 (225) T ss_dssp HHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHH-HHHHHTTSE---- T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHH-HHHHHCCCC---- T ss_conf 999975898899937640369999999969944999966889999999999986997999885899-999984997---- Q ss_pred EECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 623677687707999818998999999999999997 Q gi|254781112|r 214 KIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHL 249 (274) Q Consensus 214 ~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~ 249 (274) ++.+..+ ..+...|+.|+.-.+. T Consensus 175 ------------~vli~Sg-eSI~~Ai~~Al~~ar~ 197 (225) T 2pju_A 175 ------------GIFIYSA-ATVRQAFSDALDMTRM 197 (225) T ss_dssp ------------EEESSCH-HHHHHHHHHHHHHHHH T ss_pred ------------EEEECCH-HHHHHHHHHHHHHHHH T ss_conf ------------8997588-9999999999999999 No 131 >2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Probab=36.42 E-value=12 Score=16.06 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=20.0 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 3320134542133685577775544321003665 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) .+++..+.++..+.+.++++..+...+.|+++.| T Consensus 20 ~~L~~~G~~v~~a~~~~~al~~l~~~~~dlii~D 53 (127) T 2jba_A 20 FVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLA 53 (127) T ss_dssp HHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEE T ss_pred HHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEC T ss_conf 9999879999998999999999971799999981 No 132 >3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A Probab=34.36 E-value=20 Score=14.78 Aligned_cols=170 Identities=8% Similarity=0.034 Sum_probs=86.4 Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754 Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274) Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274) .+++|+||+.+.+.-. | .+-.+....++- ++++++...+ ....+.++.+|+...... .... T Consensus 10 ~~g~Lri~~~~sfa~~-~------------L~p~L~~F~~~~P~i~v~l~~~~---~~~~l~~~~~Dl~i~~~~--~~~~ 71 (219) T 3kos_A 10 TQEKLKIGVVGTFAIG-C------------LFPLLSDFKRSYPHIDLHISTHN---NRVDPAAEGLDYTIRYGG--GAWH 71 (219) T ss_dssp -CEEEEEEEEHHHHHH-T------------HHHHHHHHHHHCTTEEEEEEEEC---SCCCHHHHTCSEEEEEEC--SCCT T ss_pred CCCEEEEECHHHHHHH-H------------HHHHHHHHHHHCCCEEEEEEECC---CCCCCCCCCEEEEEECCC--CCCC T ss_conf 9770999781999999-9------------99999999998839799999657---522110255589973378--7886 Q ss_pred HHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEC-CCHHHHHHHC----CC---CCCEEECCHHHHHHHHHHHH Q ss_conf 200233322222222211122-221111123343202310-1012233201----34---54213368557777554432 Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQ-QDIRSFKDLTDKTVAQIL-GTDLSRFAKE----LK---SHLVFSHNFEQSLQLLLSKR 188 (274) Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~-~~~~~~~dL~g~~V~~~~-g~~~~~~l~~----~~---~~~~~~~~~~~~~~~l~~gr 188 (274) .+. +.+......+++...+. ....+++||.+...-... +.....+... .+ .....+++....++++.+|. T Consensus 72 ~~~-~~~L~~~~~~~v~sp~~~~~~~~~~dl~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~av~~G~ 150 (219) T 3kos_A 72 DTD-AQYLCSALMSPLCSPTLASQIQTPADILKFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGM 150 (219) T ss_dssp TEE-EEEEEECCEEEEBCHHHHTTCSSGGGGGGSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTS T ss_pred CCE-EEEECCCCCEEECCCCCCCCCCCHHHHHHCHHEECCCCCHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHCC T ss_conf 643-6773024435523832024689999997232100267641577776316665556652389721899999999599 Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC Q ss_conf 10036655899999984587667326236776877079998189 Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG 232 (274) Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 232 (274) .= .+.+...+...+..... +...........++++.+++ T Consensus 151 Gi-allp~~~v~~~l~~g~L----v~~~~~~~~~~~~~l~~~~~ 189 (219) T 3kos_A 151 GV-AIAPVRMFTHLLSSERI----VQPFLTQIDLGSYWITRLQS 189 (219) T ss_dssp CB-EEEEGGGCHHHHHTTSS----BCCCCCCBCSCEEEEEEETT T ss_pred EE-EECCHHHHHHHHHCCCE----EEECCCCCCCCEEEEEEECC T ss_conf 89-98879999999878987----97467677656199999699 No 133 >3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS} Probab=33.98 E-value=13 Score=15.85 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=25.7 Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHC Q ss_conf 299855566898898864310322110000 Q gi|254781112|r 80 LNLKVEFFETAVSGLITGLDTNRYDVLVNV 109 (274) Q Consensus 80 lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 109 (274) .|+++++........+..+.+|.+|+++.. T Consensus 52 tgi~V~~~~~GSg~~i~~l~~G~~Di~~ss 81 (294) T 3cvg_A 52 APFKVAWYKSDTTVTINYLKDGIVDVGITY 81 (294) T ss_dssp --CEEEEEECCHHHHHHHHHTTSCSEEEES T ss_pred CCEEEEEEECCCHHHHHHHHCCCCCEEEEC T ss_conf 983899996882999999865898468631 No 134 >2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureus subsp. aureus MU50, structural genomics; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Probab=33.11 E-value=20 Score=14.74 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=14.7 Q ss_pred CCCCC-CCHHHHHHHHHCCCCCC Q ss_conf 55566-89889886431032211 Q gi|254781112|r 84 VEFFE-TAVSGLITGLDTNRYDV 105 (274) Q Consensus 84 ~~~~~-~~~~~~~~~l~~g~~D~ 105 (274) .++++ .++..+++++.+|++|. T Consensus 29 ~~~~~~~s~~~v~~av~~~~~d~ 51 (267) T 2qmw_A 29 ATFQPKSNLFEVIKAVADDDTSI 51 (267) T ss_dssp SEEEEESSHHHHHHHHHHCSSEE T ss_pred CEEECCCCHHHHHHHHHCCCCCE T ss_conf 54650599999999997799888 No 135 >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Probab=31.83 E-value=17 Score=15.14 Aligned_cols=84 Identities=10% Similarity=0.112 Sum_probs=42.6 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHCCCCCCCEEECCCCCC--------CCCEE Q ss_conf 332013454213368557777554432100366558-------999999845876673262367768--------77079 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDI-------PFFNFLERRPHDGNLFKIADRMKD--------NSAVA 226 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 226 (274) .+++..+-++..+.+.+++++.+...+.|+++.|-. .....+++.+.....+.+...... ..... T Consensus 21 ~~L~~~g~~v~~a~~g~~al~~l~~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~~ii~lT~~~~~~~~~~a~~~Ga~d 100 (136) T 1mvo_A 21 YNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADD 100 (136) T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCE T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCC T ss_conf 99998899999989999999998845998998269999998899999998549998599997879999999999869962 Q ss_pred EEEECCC-HHHHHHHHHHHH Q ss_conf 9981899-899999999999 Q gi|254781112|r 227 FMMRKGN-NKLTRSINEILC 245 (274) Q Consensus 227 ~~~~k~~-~~L~~~in~~l~ 245 (274) +..++-+ .+|...++..+. T Consensus 101 yl~KP~~~~~L~~~i~~~l~ 120 (136) T 1mvo_A 101 YMTKPFSPREVNARVKAILR 120 (136) T ss_dssp EEESSCCHHHHHHHHHHHHH T ss_pred EEECCCCHHHHHHHHHHHHH T ss_conf 78898999999999999998 No 136 >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri} Probab=31.78 E-value=22 Score=14.52 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=18.9 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 3320134542133685577775544321003665 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) .+++..+.++..+.+..+++..+...+.|+++.| T Consensus 24 ~~L~~~g~~v~~a~~g~eal~~l~~~~pdlillD 57 (132) T 3lte_A 24 RVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLD 57 (132) T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEE T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE T ss_conf 9999889999998899999999974799999996 No 137 >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} Probab=31.33 E-value=22 Score=14.47 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=29.1 Q ss_pred CCCCCEEEECCCH-----HHHHHHCCCCCCEEECCHHHHHHHHHHH-HHHCCCCC Q ss_conf 3343202310101-----2233201345421336855777755443-21003665 Q gi|254781112|r 147 LTDKTVAQILGTD-----LSRFAKELKSHLVFSHNFEQSLQLLLSK-RTDATMIP 195 (274) Q Consensus 147 L~g~~V~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~g-rvD~~~~~ 195 (274) +.+.+|-++-+.. ...++++.+.++..+.|.+++++.+.++ .+|+++.| T Consensus 3 ~~~~~ILiVDDd~~~~~~l~~~L~~~G~~v~~a~s~~eAl~~l~~~~~~dlvi~D 57 (132) T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTD 57 (132) T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEE T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEE T ss_conf 9999899997999999999999998799999989999999999838998799873 No 138 >3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Probab=31.20 E-value=0.78 Score=23.48 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=44.0 Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 1336855777755443210036655899999984587667326236776877079998189--98999999999999997 Q gi|254781112|r 172 VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILCAIHL 249 (274) Q Consensus 172 ~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~~l~~ 249 (274) .......+....+..|+....+................ ...............+++++++ +++....|=+.+ . T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~I~~~s~~~eaA~~Fi~fl----~ 285 (355) T 3c9h_A 211 KVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPD-VGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFF----M 285 (355) T ss_dssp EEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTT-EEEECCSSCEEEECCEEEEETTBSCHHHHHHHHHHH----H T ss_pred CCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCC-EEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHH----C T ss_conf 66567789998875267507998411888877641887-169932588466333468878999889999999997----7 Q ss_pred CCHHHHHHHHHCCC Q ss_conf 98599999876788 Q gi|254781112|r 250 DGTYKKIFDRYFDK 263 (274) Q Consensus 250 ~G~~~~I~~kw~g~ 263 (274) |.+-++++.+-.|. T Consensus 286 s~e~Q~~~a~~~~~ 299 (355) T 3c9h_A 286 SKEGQTIMARQLQI 299 (355) T ss_dssp SHHHHHHHHHHSCC T ss_pred CHHHHHHHHHHCCC T ss_conf 99999999983786 No 139 >3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B} Probab=30.79 E-value=23 Score=14.42 Aligned_cols=146 Identities=11% Similarity=0.027 Sum_probs=75.0 Q ss_pred HHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEE-CCCHHHH----HH Q ss_conf 8864310322110000367567542002333222222222111222----2111112334320231-0101223----32 Q gi|254781112|r 94 LITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQI-LGTDLSR----FA 164 (274) Q Consensus 94 ~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~~-~g~~~~~----~l 164 (274) ....+.+|++|++......+ ...+. ..|+......+++.++.+ .-.++++|.+...... .++.... .. T Consensus 131 ~~~~L~~~~~Dl~i~~~~~~--~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 207 (306) T 3hhg_A 131 GYINLIERKVDIALRAGELD--DSGLR-ARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDA 207 (306) T ss_dssp SSHHHHTTSSSCEEESCCCC--CSSCE-EEEEEEEEEEEEECHHHHHHHCCCSSTTGGGGSCBCEESSTTTSCEEEEECS T ss_pred HHHHHHCCCCEEEEECCCCC--CCCEE-EEEEEEEEEEEEEECHHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHH T ss_conf 78898749903999817888--89848-9996303599998064776459989978961484798569986036788763 Q ss_pred HCCCC---CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCC--CCCCCCEEEEEECC---CHHH Q ss_conf 01345---4213368557777554432100366558999999845876673262367--76877079998189---9899 Q gi|254781112|r 165 KELKS---HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR--MKDNSAVAFMMRKG---NNKL 236 (274) Q Consensus 165 ~~~~~---~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~---~~~L 236 (274) ...+. ......+......++.+|..= .+.+...+...+... ..+.+.++ +.....+++..+++ ++.. T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~g~gi-~~lp~~~~~~~l~~~----~lv~i~~~~~~~~~~~~~lv~~~~~~~~~~~ 282 (306) T 3hhg_A 208 QGNPYKISPHFTASSGEILRSLCLSGCGI-VCLSDFLVDNDIAEG----KLIPLLAEQTSDKTHPFNAVYYSDKAVNLRL 282 (306) T ss_dssp SSCEEECCCSSEESSHHHHHHHHHTTSCE-EEEEHHHHHHHHHHT----SSEECSTTTBCCCEEEEEEEECSGGGGCHHH T ss_pred HCCCCCCCCCEECCCHHHHHHHHHCCCCE-EECCHHHHHHHHHCC----CEEEECCCCCCCCEEEEEEEEECCCCCCHHH T ss_conf 05765545431026899999999819928-992399999999779----8699567456787138999997998789999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254781112|r 237 TRSINEILCAI 247 (274) Q Consensus 237 ~~~in~~l~~l 247 (274) ...++.-+.++ T Consensus 283 ~~f~d~l~e~l 293 (306) T 3hhg_A 283 RVFLDFLVEEL 293 (306) T ss_dssp HHHHHHHHHHC T ss_pred HHHHHHHHHHH T ss_conf 99999999985 No 140 >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Probab=30.63 E-value=20 Score=14.82 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=14.9 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCC Q ss_conf 32013454213368557777554432100366 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMI 194 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~ 194 (274) ++++.+-++..+.+.+++++.+..++.|+++. T Consensus 20 ~L~~~g~~v~~a~~g~~al~~~~~~~~dlvil 51 (116) T 3a10_A 20 ELQEEGYEIDTAENGEEALKKFFSGNYDLVIL 51 (116) T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE T ss_conf 99987999999899999999998479998998 No 141 >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Probab=30.07 E-value=21 Score=14.60 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=14.8 Q ss_pred EHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 16789976299855566898898864310322110 Q gi|254781112|r 72 LIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVL 106 (274) Q Consensus 72 l~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~ 106 (274) ++..+.+..|+++.. ..+....+..+++..+|++ T Consensus 19 ~l~~~L~~~G~~v~~-a~~g~eal~~l~~~~~dlv 52 (142) T 2qxy_A 19 AVKNALEKDGFNVIW-AKNEQEAFTFLRREKIDLV 52 (142) T ss_dssp HHHHHHGGGTCEEEE-ESSHHHHHHHHTTSCCSEE T ss_pred HHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEE T ss_conf 999999987999999-8999999999985799999 No 142 >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Probab=29.55 E-value=24 Score=14.28 Aligned_cols=34 Identities=6% Similarity=0.067 Sum_probs=19.8 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 3320134542133685577775544321003665 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) .+++..+.++..+.+..++++.+...+.|+++.| T Consensus 19 ~~L~~~g~~v~~a~~g~~al~~~~~~~pdlillD 52 (124) T 1mb3_A 19 DLLEAQGYETLQTREGLSALSIARENKPDLILMD 52 (124) T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEE T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEC T ss_conf 9999879999998999999999983799999978 No 143 >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Probab=29.08 E-value=23 Score=14.42 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=45.3 Q ss_pred HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHCCCCCCCEEECCCCC--------CCCC- Q ss_conf 2332013454213368557777554432100366558-------99999984587667326236776--------8770- Q gi|254781112|r 161 SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDI-------PFFNFLERRPHDGNLFKIADRMK--------DNSA- 224 (274) Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~- 224 (274) ..+++..+.++..+.|..++++.+.+.++|+++.|.. .+...+++.......+.+..... .... T Consensus 31 ~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvi~D~~mP~~~G~ell~~ir~~~~~~piI~lT~~~~~~~~~~a~~~Gav 110 (153) T 3hv2_A 31 QQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEI 110 (153) T ss_dssp HHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCC T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC T ss_conf 99999879999998999999999872799999983678899889999999986899968999799999999999977998 Q ss_pred EEEEEECCC-HHHHHHHHHHHHHHH Q ss_conf 799981899-899999999999999 Q gi|254781112|r 225 VAFMMRKGN-NKLTRSINEILCAIH 248 (274) Q Consensus 225 ~~~~~~k~~-~~L~~~in~~l~~l~ 248 (274) ..+..++=+ .+|...+++++..-+ T Consensus 111 ~~yl~KP~~~~~L~~~i~~~l~~~~ 135 (153) T 3hv2_A 111 YRYLSKPWDDQELLLALRQALEHQH 135 (153) T ss_dssp SEEECSSCCHHHHHHHHHHHHHHHH T ss_pred CCEEECCCCHHHHHHHHHHHHHHHH T ss_conf 8778898999999999999999999 No 144 >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Probab=29.04 E-value=25 Score=14.23 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=22.2 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 33201345421336855777755443210036655 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) .+++..+-++..+.+..++++.+...+.|+++.|. T Consensus 20 ~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~ 54 (120) T 3f6p_A 20 FNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDI 54 (120) T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEET T ss_pred HHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEEC T ss_conf 99998899999989999999999718999999829 No 145 >3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Probab=29.02 E-value=19 Score=14.90 Aligned_cols=89 Identities=8% Similarity=0.111 Sum_probs=48.0 Q ss_pred HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHCCCCCCC--EEECC--CCC-C----CC- Q ss_conf 2332013454213368557777554432100366558-------999999845876673--26236--776-8----77- Q gi|254781112|r 161 SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDI-------PFFNFLERRPHDGNL--FKIAD--RMK-D----NS- 223 (274) Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~--~~~-~----~~- 223 (274) ...++..+.++..+.+.++++..+...+.|+++.|.. .....+++.+..... +.+.. ... . .. T Consensus 24 ~~~L~~~g~~v~~a~~g~eal~~l~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~~ipiI~lT~~~~~~~~~~a~~~G 103 (142) T 3cg4_A 24 KTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEY 103 (142) T ss_dssp HHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGG T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCC T ss_conf 99999879999998999999999971799999983899998689999999857556899599997889999999999869 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHHHHH Q ss_conf 079998189-98999999999999997 Q gi|254781112|r 224 AVAFMMRKG-NNKLTRSINEILCAIHL 249 (274) Q Consensus 224 ~~~~~~~k~-~~~L~~~in~~l~~l~~ 249 (274) ...+..++= ..+|.+.+...+...+. T Consensus 104 ~~dyl~KP~~~~~Ll~~v~~~l~~~r~ 130 (142) T 3cg4_A 104 VVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142) T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHHHH T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 988998989999999999999998886 No 146 >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Probab=29.01 E-value=25 Score=14.23 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=17.0 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHH Q ss_conf 32013454213368557777554432100366558 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDI 197 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~ 197 (274) ++++.+-.+..+.+.++++..+...+.|+++.+.. T Consensus 37 ~L~~~G~~v~~a~~g~~al~~l~~~~~DlviLp~~ 71 (137) T 2pln_A 37 GLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDK 71 (137) T ss_dssp HHHHTTCEEEEESCHHHHHHHHHHSCCSEEEECST T ss_pred HHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC T ss_conf 99988999999899999999997289999998278 No 147 >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Probab=28.94 E-value=23 Score=14.41 Aligned_cols=33 Identities=6% Similarity=-0.012 Sum_probs=19.2 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 320134542133685577775544321003665 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) .++..+.++..+.+..+++..+...+.|+++.| T Consensus 22 ~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D 54 (123) T 1xhf_A 22 IFEAEGYDVFEATDGAEMHQILSEYDINLVIMD 54 (123) T ss_dssp HHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEC T ss_pred HHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE T ss_conf 999879999998999999999970899999996 No 148 >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Probab=28.57 E-value=25 Score=14.18 Aligned_cols=107 Identities=7% Similarity=0.021 Sum_probs=65.1 Q ss_pred CCCCCCCCEEEECCCHH-----HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHCCCCCC Q ss_conf 11233432023101012-----233201345421336855777755443210036655-------899999984587667 Q gi|254781112|r 144 FKDLTDKTVAQILGTDL-----SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD-------IPFFNFLERRPHDGN 211 (274) Q Consensus 144 ~~dL~g~~V~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~-------~~~~~~~~~~~~~~~ 211 (274) ..+..+++|-++-+... ..+++..+.++..+.+..+++..+...+.|++++|- ..+...+++...... T Consensus 124 ~~~~~~~~iLvvdD~~~~~~~l~~~L~~~g~~v~~a~~g~~Al~~~~~~~~dlil~D~~mP~mdG~e~~~~ir~~~~~~p 203 (254) T 2ayx_A 124 VSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLP 203 (254) T ss_dssp CCCCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSC T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC T ss_conf 67899998999909899999999999987999999899999999998479989999503689983899999996299997 Q ss_pred CEEECCCCCC-------CCC-EEEEEECCC-HHHHHHHHHHHHHHHHC Q ss_conf 3262367768-------770-799981899-89999999999999979 Q gi|254781112|r 212 LFKIADRMKD-------NSA-VAFMMRKGN-NKLTRSINEILCAIHLD 250 (274) Q Consensus 212 ~~~~~~~~~~-------~~~-~~~~~~k~~-~~L~~~in~~l~~l~~~ 250 (274) ++.+...... ..+ -.+..++=+ .+|...+++.+.+.++. T Consensus 204 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~r~r~~ 251 (254) T 2ayx_A 204 VIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRKS 251 (254) T ss_dssp EEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 999989999999999998699899979899999999999999999982 No 149 >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Probab=27.58 E-value=26 Score=14.07 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=21.5 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 33201345421336855777755443210036655 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) .+++..+.++..+.+..++++.+...+.|+++.|. T Consensus 21 ~~L~~~g~~v~~a~~g~eal~~~~~~~~dliilD~ 55 (124) T 1srr_A 21 EVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDM 55 (124) T ss_dssp HHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEES T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC T ss_conf 99998699899959989999999807998899853 No 150 >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Probab=27.12 E-value=24 Score=14.32 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=18.1 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 320134542133685577775544321003665 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) .++..+.++..+.+.+++++.+...+.|+++.| T Consensus 22 ~L~~~G~~v~~a~~g~eal~~l~~~~pdliilD 54 (138) T 3c3m_A 22 MLERGGYRPITAFSGEECLEALNATPPDLVLLD 54 (138) T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEE T ss_pred HHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE T ss_conf 999879999998999999999753899899970 No 151 >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} Probab=27.01 E-value=25 Score=14.17 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=17.1 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 320134542133685577775544321003665 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) ++++.+-++..+.+.++++..+...+.|+++.| T Consensus 23 ~L~~~g~~v~~a~~~~eal~~l~~~~~dlillD 55 (136) T 2qzj_A 23 FLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLE 55 (136) T ss_dssp HHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEE T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEC T ss_conf 999879999998999999998862799999977 No 152 >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Probab=26.94 E-value=19 Score=14.89 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=15.0 Q ss_pred EHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 16789976299855566898898864310322110 Q gi|254781112|r 72 LIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVL 106 (274) Q Consensus 72 l~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~ 106 (274) .+....+..|+++... .+....+..+++.++|++ T Consensus 18 ~l~~~L~~~g~~v~~a-~~~~~a~~~l~~~~~dli 51 (124) T 1dc7_A 18 VLERALAGAGLTCTTF-ENGNEVLAALASKTPDVL 51 (124) T ss_dssp HHHHHHTTTTCCCEEC-CCTTHHHHHSSSCCCSCE T ss_pred HHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEE T ss_conf 9999999889999998-999999999983899999 No 153 >1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H* Probab=26.80 E-value=6.7 Score=17.71 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=55.8 Q ss_pred CCCCCCCHHHHHHHHHCCCCCC-CHHCCCCHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHH Q ss_conf 5556689889886431032211-00003675675420--02333222222222111222211111233432023101012 Q gi|254781112|r 84 VEFFETAVSGLITGLDTNRYDV-LVNVAITPERQKKY--DFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDL 160 (274) Q Consensus 84 ~~~~~~~~~~~~~~l~~g~~D~-~~~~~~t~eR~~~~--~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~ 160 (274) +++..+....+-..+..|.+|+ +.|.-+-.|....+ ....++.....++.++.+. .+.+ ..+||+.-.--.. T Consensus 40 i~i~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~v~~~~~L~~g~c~l~vA~p~~~-~~~~----~~~rIATkYpnit 114 (219) T 1o63_A 40 IVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGR-GIPE----GEKRIATKFPNVT 114 (219) T ss_dssp EEEEEECGGGHHHHHHTTSCSEEEEEHHHHHHSCCCCBCCSEEEEEEEEEEEEEETTT-CCCS----SCEEEEESCHHHH T ss_pred EEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCEEEEEECCCCC-CCCC----CCCEEEEHHHHHH T ss_conf 6999978899999998499864655077775433652355314555024786215445-6555----5626532214499 Q ss_pred HHHHHCCCCC--CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC Q ss_conf 2332013454--21336855777755443210036655899999984587 Q gi|254781112|r 161 SRFAKELKSH--LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPH 208 (274) Q Consensus 161 ~~~l~~~~~~--~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~ 208 (274) .+|.++.+.+ ++......++ +-..|-+|+++ |-...-..++.+.. T Consensus 115 ~~ff~~~gi~~~ii~l~GavE~--Ap~~G~AD~IV-DivsTG~TLk~N~L 161 (219) T 1o63_A 115 QRYCESKGWHCRIIPLKGSVEL--APIAGLSDLIV-DITETGRTLKENNL 161 (219) T ss_dssp HHHHHHHTCCEEEEECSSCTTH--HHHHTSCSEEE-EEESSSHHHHHTTE T ss_pred HHHHHHCCCCEEEEECCCCCCC--CCCCCCEEEEE-EEECCHHHHHHCCC T ss_conf 9999983993489975697767--88898321788-88357588998789 No 154 >3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} PDB: 1y4t_A Probab=26.61 E-value=23 Score=14.41 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=29.3 Q ss_pred EEEHHHHHHHCCCCCCCCCCCHHHHHHHH----HCCCCCCCHH Q ss_conf 52167899762998555668988988643----1032211000 Q gi|254781112|r 70 IDLIKEVAHRLNLKVEFFETAVSGLITGL----DTNRYDVLVN 108 (274) Q Consensus 70 ~dl~~~i~~~lg~~~~~~~~~~~~~~~~l----~~g~~D~~~~ 108 (274) -+|++..-++.|++|+++..+...++..+ .++.+|++++ T Consensus 16 ~~l~~~Fek~tGIkV~~~~~~s~~~~~kl~ae~~~~~~DVv~~ 58 (322) T 3e13_X 16 FEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFIT 58 (322) T ss_dssp HHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHGGGCCCCEEEE T ss_pred HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEE T ss_conf 9999999997698899998981999999996478999639995 No 155 >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Probab=26.41 E-value=27 Score=13.99 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=22.7 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 33201345421336855777755443210036655 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) .+++..+.++..+.+.++++..+.+.+.|+++.|. T Consensus 24 ~~L~~~G~~v~~a~~~~eAl~~l~~~~~dlvilD~ 58 (140) T 3grc_A 24 LMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDL 58 (140) T ss_dssp HHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECS T ss_pred HHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECC T ss_conf 99998799999989999999999718998998536 No 156 >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Probab=26.09 E-value=27 Score=13.94 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=17.7 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 320134542133685577775544321003665 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) ++++.+-++..+.+.+++++.+.+.+.|.++.| T Consensus 20 ~L~~~g~~v~~a~~g~~al~~l~~~~~dliilD 52 (120) T 2a9o_A 20 NMTKEGYEVVTAFNGREALEQFEAEQPDIIILD 52 (120) T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEC T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEC T ss_conf 999889999998999999999985799899982 No 157 >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Probab=25.85 E-value=26 Score=14.12 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=17.5 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 3201345421336855777755443210036655 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) ++++.+.++..+.+.++++..+...+.|+++.|. T Consensus 26 ~L~~~G~~v~~a~~~~~al~~l~~~~~DlillD~ 59 (154) T 3gt7_A 26 ILEETGYQTEHVRNGREAVRFLSLTRPDLIISDV 59 (154) T ss_dssp HHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEES T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC T ss_conf 9998799999989999999999838999999808 No 158 >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Probab=24.97 E-value=28 Score=13.88 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=19.5 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 3320134542133685577775544321003665 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) ..++..+.++..+.+.++++..+..+..|+++.| T Consensus 18 ~~L~~~G~~v~~a~~~~~al~~l~~~~~dlii~D 51 (121) T 2pl1_A 18 VQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVD 51 (121) T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEC T ss_pred HHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEC T ss_conf 9999879999998999999999645899899988 No 159 >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Probab=23.77 E-value=30 Score=13.65 Aligned_cols=34 Identities=15% Similarity=0.027 Sum_probs=19.8 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 3201345421336855777755443210036655 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) ++++.+-++..+.+..++++.+...+.|+++.|. T Consensus 21 ~L~~~g~~v~~a~~g~eal~~~~~~~pdliilD~ 54 (122) T 3gl9_A 21 NLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXI 54 (122) T ss_dssp HHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECS T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC T ss_conf 9998799999989999999999837999998510 No 160 >2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Probab=23.48 E-value=31 Score=13.60 Aligned_cols=43 Identities=7% Similarity=-0.012 Sum_probs=22.6 Q ss_pred CCCEEEECCCHHHHHHHCCCCCCEEEC---------CHHHHHHHHHHHHHHCCC Q ss_conf 432023101012233201345421336---------855777755443210036 Q gi|254781112|r 149 DKTVAQILGTDLSRFAKELKSHLVFSH---------NFEQSLQLLLSKRTDATM 193 (274) Q Consensus 149 g~~V~~~~g~~~~~~l~~~~~~~~~~~---------~~~~~~~~l~~grvD~~~ 193 (274) |.+|-...|+. +++++.+.....+. +..+...++.+|++|.++ T Consensus 50 Gf~i~AT~GTa--~~L~~~gi~~~~V~~~~~~~~~~~~~~i~~~i~~g~i~lVI 101 (143) T 2yvq_A 50 GFKLFATEATS--DWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVI 101 (143) T ss_dssp TCEEEEEHHHH--HHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEE T ss_pred CCEEEECHHHH--HHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCEEEEE T ss_conf 96789735899--99997598518998521367666743399998759759999 No 161 >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Probab=22.89 E-value=32 Score=13.53 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=22.2 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCH Q ss_conf 33201345421336855777755443210036655 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPD 196 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~ 196 (274) .+++..+-++..+.+.++++..+...+.|+++.|. T Consensus 19 ~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~ 53 (121) T 1zh2_A 19 TALEGDGMRVFEAETLQRGLLEAATRKPDLIILDL 53 (121) T ss_dssp HHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEES T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC T ss_conf 99998799999988899999999717999999809 No 162 >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Probab=22.88 E-value=32 Score=13.53 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=12.3 Q ss_pred CCCCCCE-EECCHHHHHHHHHHHHHHCCCC Q ss_conf 1345421-3368557777554432100366 Q gi|254781112|r 166 ELKSHLV-FSHNFEQSLQLLLSKRTDATMI 194 (274) Q Consensus 166 ~~~~~~~-~~~~~~~~~~~l~~grvD~~~~ 194 (274) +.+.+++ ...|..++++.+...+.|.++. T Consensus 24 ~~g~~v~~~a~~g~~al~~~~~~~~dlii~ 53 (120) T 1tmy_A 24 KAGYEVAGEATNGREAVEKYKELKPDIVTM 53 (120) T ss_dssp HTTCEEEEEESSHHHHHHHHHHHCCSEEEE T ss_pred HCCCEEEEEECCHHHHHHHHHHCCCCEEEE T ss_conf 879989999899999999998369999999 No 163 >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Probab=21.96 E-value=33 Score=13.41 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=14.4 Q ss_pred EHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 16789976299855566898898864310322110 Q gi|254781112|r 72 LIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVL 106 (274) Q Consensus 72 l~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~ 106 (274) ++....+..|+++... .+....+..++..+.|++ T Consensus 16 ~~~~~L~~~g~~v~~a-~~~~~al~~l~~~~pdlv 49 (119) T 2j48_A 16 VVCEMLTAAGFKVIWL-VDGSTALDQLDLLQPIVI 49 (119) T ss_dssp HHHHHHHHTTCEEEEE-SCHHHHHHHHHHHCCSEE T ss_pred HHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEE T ss_conf 9999999889999998-999999999981799989 No 164 >1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Probab=21.18 E-value=35 Score=13.31 Aligned_cols=33 Identities=3% Similarity=0.065 Sum_probs=16.4 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 320134542133685577775544321003665 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) ++++.+.++..+.+..++++.+.+...|+++.| T Consensus 21 ~L~~~g~~v~~a~~~~~a~~~l~~~~~dliilD 53 (122) T 1zgz_A 21 YFTQEGYTVSVTASGAGLREIMQNQSVDLILLD 53 (122) T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEE T ss_pred HHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE T ss_conf 999879999998999999999973999899997 No 165 >3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis} Probab=20.94 E-value=28 Score=13.86 Aligned_cols=80 Identities=10% Similarity=0.090 Sum_probs=41.8 Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHH Q ss_conf 21336855777755443210036655899999984587667326236776877079998189-----9899999999999 Q gi|254781112|r 171 LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILC 245 (274) Q Consensus 171 ~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~ 245 (274) +..+.+......++.+|++|.+......... .......... .. .+ ......+.++.. ++.++.+|..+|. T Consensus 218 ~~~~~~~~~~~~~~~~G~~D~~~~~~~~~~~--~~~~~~~~~~-~~-~~-~~~~~~~~~N~~~~~~~d~~vRqAl~~aiD 292 (522) T 3m8u_A 218 FEIVPDATARYAKLQAGACDLIDFPNAADLE--KMKTDPKVNL-HS-QS-GLNIAYIAFNTEKAPFDNVKVRQALNYAVD 292 (522) T ss_dssp EEECCCHHHHHHHHHHTSCSEESSCCHHHHH--HHTSCTTCEE-EE-EE-CSEEEEEEECTTSTTTTSHHHHHHHHHTCC T ss_pred EEEECCHHHHHHHHHCCCCCEECCCCHHHHH--HHHCCCCCCE-EC-CC-CCCEEEEEECCCCCCCCCHHHHHHHHHHCC T ss_conf 7980887999999985998653266156665--6402565310-01-58-862588741257743389999999997519 Q ss_pred HHHHCCHHHHHHHHHCC Q ss_conf 99979859999987678 Q gi|254781112|r 246 AIHLDGTYKKIFDRYFD 262 (274) Q Consensus 246 ~l~~~G~~~~I~~kw~g 262 (274) .++|.+..++ T Consensus 293 -------r~~i~~~~~~ 302 (522) T 3m8u_A 293 -------KNAIIDAVYR 302 (522) T ss_dssp -------HHHHHHHTTT T ss_pred -------HHHHHHHHHC T ss_conf -------9999999857 No 166 >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Probab=20.40 E-value=36 Score=13.21 Aligned_cols=36 Identities=8% Similarity=-0.063 Sum_probs=24.5 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHH Q ss_conf 332013454213368557777554432100366558 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDI 197 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~ 197 (274) .+++..+.++..+.+.+++++.+...+.|+++.|.. T Consensus 25 ~~L~~~g~~v~~a~~g~eAl~~~~~~~~DlvilD~~ 60 (137) T 3hdg_A 25 TIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIR 60 (137) T ss_dssp HHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSS T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECC T ss_conf 999967999999899999999987479989997378 No 167 >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} Probab=20.39 E-value=36 Score=13.21 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=24.1 Q ss_pred HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 23320134542133685577775544321003665 Q gi|254781112|r 161 SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) ..+++..+.++..+.+.+++++.+.....|+++.| T Consensus 20 ~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD 54 (140) T 2qr3_A 20 QLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLD 54 (140) T ss_dssp HHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEE T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE T ss_conf 99999789999998999999999972799999991 No 168 >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Probab=20.23 E-value=35 Score=13.25 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=16.9 Q ss_pred HHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 320134542133685577775544321003665 Q gi|254781112|r 163 FAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) .++..+-++..+.+..+++..+...+.|+++.| T Consensus 24 ~L~~~g~~v~~a~~~~~al~~l~~~~pdliilD 56 (127) T 2gkg_A 24 ALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLA 56 (127) T ss_dssp HHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEE T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE T ss_conf 999879999998999999999984799999997 No 169 >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Probab=20.22 E-value=36 Score=13.19 Aligned_cols=34 Identities=9% Similarity=-0.046 Sum_probs=20.1 Q ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCC Q ss_conf 3320134542133685577775544321003665 Q gi|254781112|r 162 RFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274) Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274) .+++..+-++..+.+.++++..+...+.|+++.| T Consensus 21 ~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~D 54 (126) T 1dbw_A 21 FMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTD 54 (126) T ss_dssp HHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEE T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEECC T ss_conf 9999879999998999999999763799879710 No 170 >1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Probab=20.11 E-value=36 Score=13.17 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=67.6 Q ss_pred CCCCCCC---CCCHHHHHHHHHCCCCCCCH-H--CCCCHHHHHHHCCCCCCC------------CCCCCCCCCCCCCCCC Q ss_conf 9985556---68988988643103221100-0--036756754200233322------------2222222111222211 Q gi|254781112|r 81 NLKVEFF---ETAVSGLITGLDTNRYDVLV-N--VAITPERQKKYDFSIPYI------------AHRVLLVVRSDQQDIR 142 (274) Q Consensus 81 g~~~~~~---~~~~~~~~~~l~~g~~D~~~-~--~~~t~eR~~~~~fs~p~~------------~~~~~~~~~~~~~~~~ 142 (274) +..++|. ..+-..+++.+++|++|++. . -.+.. +...+. -.|+. ....+.++++++. + T Consensus 32 ~~~p~~~Cv~~~~~~~C~~~I~~G~AD~~~ld~~~~~~A-~~~~~~-L~pi~aE~~~~~~~~~~~Y~aVavVkk~s~-~- 107 (327) T 1ryo_A 32 SDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDA-YLAPNN-LKPVVAEFYGSKEDPQTFYYAVAVVKKDSG-F- 107 (327) T ss_dssp TTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHH-HSTTTC-CEEEEEEEEECSSSEESEEEEEEEEETTCC-C- T ss_pred CCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH-HCCCCC-CEEEEEEEECCCCCCCEEEEEEEEEECCCC-C- T ss_conf 789866999579999999999779988899786999987-534589-778788720477788517999999967874-4- Q ss_pred CCCCCCCCCEEEE-----CCCHHH--HHHHCC---------------------CC------------------CCEEECC Q ss_conf 1112334320231-----010122--332013---------------------45------------------4213368 Q gi|254781112|r 143 SFKDLTDKTVAQI-----LGTDLS--RFAKEL---------------------KS------------------HLVFSHN 176 (274) Q Consensus 143 ~~~dL~g~~V~~~-----~g~~~~--~~l~~~---------------------~~------------------~~~~~~~ 176 (274) +++||+||+.+-. .|+... .++++. +. ..-.|.. T Consensus 108 ~~~~LkGKksChtG~~~taGw~~Pv~~l~~~~~~~~~~~~~~v~~fF~~sC~pg~~~~~~~~lC~lC~~~~~~~~~~Y~G 187 (327) T 1ryo_A 108 QMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCSTLNQYFG 187 (327) T ss_dssp CGGGCTTCCEEESCTTCTTTTHHHHHHHGGGSCSCCCSHHHHHHHHSSSEECTTSCTTTCGGGGTTSTTCCSSTTSTTCH T ss_pred CHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 46562699502158888521115788997525888875045678760665467867766542134677878898656648 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 557777554432100366558999999 Q gi|254781112|r 177 FEQSLQLLLSKRTDATMIPDIPFFNFL 203 (274) Q Consensus 177 ~~~~~~~l~~grvD~~~~~~~~~~~~~ 203 (274) ++.+++-|..|..|++++.......+. T Consensus 188 ~~GAlrCL~eg~GDVAFv~~~~v~~~~ 214 (327) T 1ryo_A 188 YSGAFKCLKDGAGDVAFVKHSTIFENL 214 (327) T ss_dssp HHHHHHHHHTTSCSEEEEETTHHHHHC T ss_pred CHHHHHHHHHCCCCEEEEECCHHHHHH T ss_conf 077899998589846998541154430 Done!