PSIBLAST alignment of GI: 254781112 and protein with PDB id: 1lst
>gi|157831886|pdb|1LST|A Chain A, Three-Dimensional Structures Of The Periplasmic Lysine-, Arginine-, Ornithine-Binding Protein With And Without A Ligand Length = 239
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 11/236 (4%)
Query: 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITG-LDT 100
+R+GTD Y P S ++D +GE GFDIDL E+ R+ +K + + LI
Sbjct: 5 TVRIGTDTTYAPFS--SKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAK 62
Query: 101 NRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQ----IL 156
++ +++IT +RQ++ FS A L+ + + L K V
Sbjct: 63 KIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQ 122
Query: 157 GTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFK-- 214
+ + +V N + L + R DA + ++ ++P
Sbjct: 123 EAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAG 182
Query: 215 --IADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNIISS 268
+ D+ +RK + +L + ++ L + DGTY K+ +YFD N+
Sbjct: 183 PSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD 238