RPSBLAST alignment for GI: 254781112 and conserved domain: TIGR01096

>gnl|CDD|162200 TIGR01096, 3A0103s03R, lysine-arginine-ornithine-binding periplasmic protein. Length = 250

 Score =  126 bits (319), Expect = 6e-30
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 16/230 (6%)

Query: 43  LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNR 102
           +R+GT+  YPP  F ++D  G+L GFD+DL K +  R+  K +F E    GLI  L   +
Sbjct: 26  VRIGTETGYPP--FESKDANGKLVGFDVDLAKALCKRMKAKCKFVEQNFDGLIPSLKAKK 83

Query: 103 YDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS 161
            D ++  ++ITP+RQK+ DFS PY A     VV+      ++ +DL  KTV    GT   
Sbjct: 84  VDAIMATMSITPKRQKQIDFSDPYYATGQGFVVKKGSDLAKTLEDLDGKTVGVQSGTTHE 143

Query: 162 RFAK-ELKS--HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-- 216
           ++ K   K    +V   +++ +   L + R DA +  D         +P +G  FK    
Sbjct: 144 QYLKDYFKPGVDIVEYDSYDNANMDLKAGRIDA-VFTDASVLAEGFLKPPNGKDFKFVGP 202

Query: 217 -----DRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYF 261
                    D   +   +RKG+ +L  + N+ L AI  DGTY+KI  ++F
Sbjct: 203 SVTDEKYFGDGYGIG--LRKGDTELKAAFNKALAAIRADGTYQKISKKWF 250