RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781112|ref|YP_003065525.1| putative amino acid-binding
periplasmic ABC transporter protein [Candidatus Liberibacter asiaticus
str. psy62]
         (274 letters)



>gnl|CDD|144186 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding
           proteins, family 3. 
          Length = 224

 Score =  181 bits (462), Expect = 2e-46
 Identities = 80/229 (34%), Positives = 117/229 (51%), Gaps = 13/229 (5%)

Query: 43  LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNR 102
           LRVGTD  YPP S+   D  G+L GFD+DL K +A RL +KVEF   +  GLI  L + +
Sbjct: 1   LRVGTDADYPPFSYL--DEDGKLVGFDVDLAKAIAKRLGVKVEFVPVSWDGLIPALQSGK 58

Query: 103 YDVLVN-VAITPERQKKYDFSIPYIAHRVLLVVRSD----QQDIRSFKDLTDKTVAQILG 157
            DV++  + ITPER+KK DFS PY     +LVVR D     + I+   DL  K V    G
Sbjct: 59  IDVIIAGMTITPERKKKVDFSDPYYYSGQVLVVRKDSPPKIKSIKDLADLKGKKVGVQKG 118

Query: 158 TDLSRFAKELKSH---LVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFK 214
           T      KEL      +V   +  ++LQ L + R DA +         +++ P    L  
Sbjct: 119 TTQEDLLKELAPKGAEIVLYDDQAEALQALAAGRVDAVVADSPVAAYLIKKNP---GLNL 175

Query: 215 IADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263
           +             +RKG+ +L  ++N+ L  +  DGT  K+++++F K
Sbjct: 176 VVGEPLSGEPYGIAVRKGDPELLAAVNKALAELKADGTLAKLYEKWFGK 224


>gnl|CDD|29040 cd00134, PBPb, Bacterial periplasmic transport systems use
           membrane-bound complexes and substrate-bound,
           membrane-associated, periplasmic binding proteins (PBPs)
           to transport a wide variety of  substrates, such as,
           amino acids, peptides, sugars, vitamins and inorganic
           ions. PBPs have two cell-membrane translocation
           functions: bind substrate, and interact with the
           membrane bound complex. A diverse group of periplasmic
           transport receptors for lysine/arginine/ornithine (LAO),
           glutamine, histidine, sulfate, phosphate, molybdate, and
           methanol are included in the PBPb CD..
          Length = 218

 Score =  144 bits (365), Expect = 2e-35
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 11/224 (4%)

Query: 43  LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNR 102
           L VGT G YPP SF   D  GELTGFD+DL K +A  L +KV+F E    GLIT L + +
Sbjct: 1   LTVGTAGTYPPFSFR--DANGELTGFDVDLAKAIAKELGVKVKFVEVDWDGLITALKSGK 58

Query: 103 YDVLVN-VAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS 161
            D++   + ITPER K+ DFS PY     +++V+     I+S KDL  K VA   G+   
Sbjct: 59  VDLIAAGMTITPERAKQVDFSDPYYKSGQVILVKKG-SPIKSVKDLKGKKVAVQKGSTAE 117

Query: 162 RFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRM 219
           ++ K+   ++ +V   +  ++L  L + R DA ++ +I     L++ P +    KI    
Sbjct: 118 KYLKKALPEAKVVSYDDNAEALAALENGRADAVIVDEIALAALLKKHPPE---LKIVGPS 174

Query: 220 KDNSAVAFMM--RKGNNKLTRSINEILCAIHLDGTYKKIFDRYF 261
            D   + F +   K N +L  ++N+ L  +  DG  KKI  ++F
Sbjct: 175 IDLEPLGFGVAVGKDNKELLDAVNKALKELRADGELKKISKKWF 218


>gnl|CDD|31176 COG0834, HisJ, ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain [Amino acid
           transport and metabolism / Signal transduction
           mechanisms].
          Length = 275

 Score =  137 bits (344), Expect = 4e-33
 Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 9/244 (3%)

Query: 36  RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLN--LKVEFFETAVSG 93
           + + +  LRVGT+  Y P         G+L GFD+DL K +A RL    KVEF   A  G
Sbjct: 29  KIKARGKLRVGTEATYAPPFEFLDAKGGKLVGFDVDLAKAIAKRLGGDKKVEFVPVAWDG 88

Query: 94  LITGLDTNRYDVLV-NVAITPERQKKYDFSIPYI-AHRVLLVVRSDQQDIRSFKDLTDKT 151
           LI  L   + D+++  + ITPER+KK DFS PY  + +VLLV +     I+S +DL  K 
Sbjct: 89  LIPALKAGKVDIIIAGMTITPERKKKVDFSDPYYYSGQVLLVKKDSDIGIKSLEDLKGKK 148

Query: 152 VAQILGTDLSRFAKELK----SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRP 207
           V   LGT      K  K    + +V   +  ++L  L + R DA +            + 
Sbjct: 149 VGVQLGTTDEAEEKAKKPGPNAKIVAYDSNAEALLALKNGRADAVVSDSAVLAGLKLLKK 208

Query: 208 HDGNLFKIADRMKDNSAVAFMMRKGNNK-LTRSINEILCAIHLDGTYKKIFDRYFDKNII 266
           + G    +         +   +RKG++  L  ++N+ L  +  DGT +KI D++F  +  
Sbjct: 209 NPGLYVLLVFPGLSVEYLGIALRKGDDPELLEAVNKALKELKADGTLQKISDKWFGPDDY 268

Query: 267 SSVP 270
           S  P
Sbjct: 269 SKAP 272


>gnl|CDD|34243 COG4623, COG4623, Predicted soluble lytic transglycosylase fused to
           an ABC-type amino acid-binding protein [Cell envelope
           biogenesis, outer membrane].
          Length = 473

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 56/241 (23%), Positives = 88/241 (36%), Gaps = 41/241 (17%)

Query: 43  LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFF-ETAVSGLITGLDTN 101
           LRV T  I  P S+   + +G  TG + +L K  A  L +K++      +  L   LD  
Sbjct: 25  LRVST--INSPLSYF--EDKGGPTGLEYELAKAFADYLGVKLKIIPADNIDQLFDALDNG 80

Query: 102 RYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDL 160
             D+    +    ER K +     Y +    LV R  Q   RS   L  + +    G+  
Sbjct: 81  NADLAAAGLLYNSERLKNFQPGPTYYSVSQQLVYRKGQYRPRSLGQLKGRQITVAKGSAH 140

Query: 161 SRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNL-FKIAD-- 217
               K LK         E     L+ K  D   + D      L     +G L + IAD  
Sbjct: 141 VEDLKLLK---------ETKYPELIWKVDDKLGVED------LLEMVAEGKLDYTIADSV 185

Query: 218 ------RMKDNSAVAF-----------MMRKGNNKLTRSINEILCAIHLDGTYKKIFDRY 260
                 R+    AVAF           + R  ++ L+ ++ + L     DG   ++ ++Y
Sbjct: 186 EISLFQRVHPELAVAFDLTDEQPVAWYLPRDDDSTLSAALLDFLNEAKEDGLLARLEEKY 245

Query: 261 F 261
            
Sbjct: 246 L 246


>gnl|CDD|36270 KOG1052, KOG1052, KOG1052, Glutamate-gated kainate-type ion channel
           receptor subunit GluR5 and related subunits [Inorganic
           ion transport and metabolism, Amino acid transport and
           metabolism, Signal transduction mechanisms].
          Length = 656

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 61  GRGELTGFDIDLIKEVAHRLNLKVEFFETA-----------VSGLITGLDTNRYDVLVNV 109
           G   + GF+IDL++ +A RLN   E                  GL+  L     DV  ++
Sbjct: 240 GNDRIEGFEIDLLQALAKRLNFSYEIIFVPDGSGSRDPNGNWDGLVGQLVDGEADVGADI 299

Query: 110 AITPERQKKYDFSIPYIAHRVLLVVRSD 137
            ITPER K  DF+IPY+   ++++VR  
Sbjct: 300 TITPERSKYVDFTIPYLQFGIVIIVRKP 327


>gnl|CDD|39641 KOG4440, KOG4440, KOG4440, NMDA selective glutamate-gated ion
           channel receptor subunit GRIN1 [Inorganic ion transport
           and metabolism, Amino acid transport and metabolism,
           Signal transduction mechanisms].
          Length = 993

 Score = 34.7 bits (79), Expect = 0.027
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 21/95 (22%)

Query: 67  GFDIDLIKEVAHRLNLKVEFFETA--------------------VSGLITGLDTNRYDVL 106
           GF IDL+ +++  +N   +    A                     +G+I  L + + D++
Sbjct: 464 GFCIDLLIKLSRTMNFTYDVHLVADGKFGTQERVNNSSETNKKEWNGMIGELLSGQADMI 523

Query: 107 VN-VAITPERQKKYDFSIPYIAHRVLLVVRSDQQD 140
           V  + I PER +  +FS P+    + ++ + + + 
Sbjct: 524 VAPLTINPERAQYIEFSKPFKYQGITILEKKEIRR 558


>gnl|CDD|146045 pfam03219, TLC, TLC ATP/ADP transporter. 
          Length = 491

 Score = 33.4 bits (77), Expect = 0.070
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 10  KIFFSKYLFFAPFFILFSYYFVIYPFR 36
           K+F+    FF  FF LF+  FV+YP R
Sbjct: 90  KVFYIIISFFLVFFALFA--FVLYPNR 114


>gnl|CDD|36271 KOG1053, KOG1053, KOG1053, Glutamate-gated NMDA-type ion channel
           receptor subunit GRIN2A and related subunits [Inorganic
           ion transport and metabolism, Amino acid transport and
           metabolism, Signal transduction mechanisms].
          Length = 1258

 Score = 32.3 bits (73), Expect = 0.13
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 13/84 (15%)

Query: 67  GFDIDLIKEVAHRLNLKVEFF-----------ETAVSGLITGLDTNRYDVLV-NVAITPE 114
           GF ID++K++A  +    + +               +G+I  +   R D+ V ++ I  E
Sbjct: 467 GFCIDILKKLARDVKFTYDLYLVTNGKHGKKINGVWNGMIGEVVYQRADMAVGSLTINEE 526

Query: 115 RQKKYDFSIPYIAHRV-LLVVRSD 137
           R +  DFS+P++   + ++V RS+
Sbjct: 527 RSEVVDFSVPFVETGISVMVARSN 550


>gnl|CDD|39916 KOG4718, KOG4718, KOG4718, Non-SMC (structural maintenance of
           chromosomes) element 1 protein (NSE1) [Chromatin
           structure and dynamics].
          Length = 235

 Score = 30.7 bits (69), Expect = 0.47
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 20/120 (16%)

Query: 52  PPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAI 111
           P  + H     G     + D I E+   L       +  +  +   +D   Y V VN+A 
Sbjct: 29  PLCANHVTTKPGSKEAIE-DFINEINDTL----HNLDQLIKRIKYPVDGREYLVYVNLAA 83

Query: 112 TPERQKKYDFS----------IPYIA-----HRVLLVVRSDQQDIRSFKDLTDKTVAQIL 156
           TP+ +    F+          +  I      H       +D       K L    + ++L
Sbjct: 84  TPDSKMATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELL 143


>gnl|CDD|33015 COG3202, COG3202, ATP/ADP translocase [Energy production and
           conversion].
          Length = 509

 Score = 30.2 bits (68), Expect = 0.59
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 9   RKIFFSKYLFFAPFFILFSYYFVIYPFR 36
            K+F+    FF  FF LF+  FVIYP++
Sbjct: 92  EKVFYIILGFFLGFFALFA--FVIYPYK 117


>gnl|CDD|36272 KOG1054, KOG1054, KOG1054, Glutamate-gated AMPA-type ion channel
           receptor subunit GluR2 and related subunits [Inorganic
           ion transport and metabolism, Amino acid transport and
           metabolism, Signal transduction mechanisms].
          Length = 897

 Score = 30.0 bits (67), Expect = 0.74
 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 60  DGRGELTGFDIDLIKEVAHRLNLKVEFF------------ETAV-SGLITGLDTNRYDVL 106
           +G     G+ +DL  E+A  + +K + F            +T + +G++  L   R D+ 
Sbjct: 440 EGNERYEGYCVDLAAEIAKHIGIKYKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIA 499

Query: 107 V-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQD---IRSFKD 146
           V  + IT  R++  DFS P+++  + ++++  Q+    + SF D
Sbjct: 500 VAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLD 543


>gnl|CDD|144535 pfam00977, His_biosynth, Histidine biosynthesis protein.  Proteins
           involved in steps 4 and 6 of the histidine biosynthesis
           pathway are contained in this family. Histidine is
           formed by several complex and distinct biochemical
           reactions catalysed by eight enzymes. The enzymes in
           this Pfam entry are called His6 and His7 in eukaryotes
           and HisA and HisF in prokaryotes. The structure of HisA
           is known to be a TIM barrel fold. In some archaeal HisA
           proteins the TIM barrel is composed of two tandem
           repeats of a half barrel. This family belong to the
           common phosphate binding site TIM barrel family.
          Length = 229

 Score = 28.6 bits (65), Expect = 1.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 13/48 (27%)

Query: 63  GELTGFDIDLIKEVAHRLNLKV-------------EFFETAVSGLITG 97
           G L+G D++L +E+A  +N+ V             E F   V G+I G
Sbjct: 173 GTLSGPDLELTRELAEAVNIPVIASGGVGSLEDLKELFSEGVDGVIAG 220


>gnl|CDD|36001 KOG0782, KOG0782, KOG0782, Predicted diacylglycerol kinase [Signal
           transduction mechanisms].
          Length = 1004

 Score = 28.1 bits (62), Expect = 2.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 142 RSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHN 176
           RS KDL         G DL+   +ELK   +   N
Sbjct: 567 RSSKDLCKHITVVCDGVDLTPKIQELKLQCIVFLN 601


>gnl|CDD|73393 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate
           synthase (HisF). Imidazole glycerol phosphate synthase
           (IGPS) catalyzes the fifth step of histidine
           biosynthesis, the formation of the imidazole ring. IGPS
           converts
           N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-
           carboxamide ribonucleotide (PRFAR) to imidazole glycerol
           phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide)
           ribonucleotide (AICAR). This conversion involves two
           tightly coupled reactions in distinct active sites of
           IGPS. The two catalytic domains can be fused, like in
           fungi and plants, or peformed by a heterodimer
           (HisH-glutaminase and HisF-cyclase), like in bacteria..
          Length = 243

 Score = 27.7 bits (62), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 60  DGRGELTGFDIDLIKEVAHRLNLKV 84
           D  G   G+D++LI+ V+  +N+ V
Sbjct: 172 DRDGTKKGYDLELIRAVSSAVNIPV 196


>gnl|CDD|29486 cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase
          subunit III.  Heme-copper oxidases include cytochrome c
          and ubiquinol oxidases.  Alcaligenes faecalis norE is
          found in a gene cluster containing norCB. norCB encodes
          the cytochrome c and cytochrome b subunits of nitric
          oxide reductase (NOR). Based on this and on its
          similarity to subunit III of cytochrome c oxidase (CcO)
          and ubiquinol oxidase, NorE has been speculated to be a
          subunit of NOR..
          Length = 186

 Score = 27.5 bits (61), Expect = 4.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 13 FSKYLFFAPFFILFSYYFVIYP 34
           S+ L F   FI ++ Y  +YP
Sbjct: 18 LSELLAFGALFIAYAVYRALYP 39


>gnl|CDD|107292 cd06297, PBP1_LacI_like_12, Ligand-binding domain of
           uncharacterized transcription regulators from Thermus
           thermophilus and close homologs.  Ligand-binding domain
           of uncharacterized transcription regulators from Thermus
           thermophilus and close homologs from other bacteria.
           This group belongs to the the LacI-GalR family
           repressors that are composed of two functional domains:
           an N-terminal  HTH (helix-turn-helix) domain, which is
           responsible for the DNA-binding specificity, and a
           C-terminal ligand-binding domain, which is homologous to
           the sugar-binding domain of ABC-type transport systems
           that contain the type I periplasmic binding protein-like
           fold.  As also observed in the periplasmic binding
           proteins, the C-terminal domain of the bacterial
           transcription repressor undergoes a conformational
           change upon ligand binding which in turn changes the DNA
           binding.
          Length = 269

 Score = 27.5 bits (61), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 85  EFFETAVSGLITGLDTNRYDVLVNVAITPERQKKY--DFSIPYIAHRVLLV 133
           EF+   + G+   L   RYD+ +   ++  R K+Y    ++ Y+   +LL 
Sbjct: 12  EFYRRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLA 62


>gnl|CDD|34614 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein
           [Cell envelope biogenesis, outer membrane].
          Length = 797

 Score = 27.2 bits (60), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 236 LTRSINEILCAIHLDGTYKK--IFDRYFDK 263
           L R I E L AI ++ +  K  I + Y +K
Sbjct: 138 LERKIKEALLAIRIEQSLSKDEILELYLNK 167


>gnl|CDD|39466 KOG4265, KOG4265, KOG4265, Predicted E3 ubiquitin ligase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 349

 Score = 26.9 bits (59), Expect = 6.5
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 12  FFSKYLFFAPFFILFSYYFVIYPFRTEDQS-ALRVGTDGIYPPHSFHAQDGRGEL----- 65
           F    L      +LF        F  E+    L +      P  + H + G G+L     
Sbjct: 141 FTFDALAQGAITVLF--------FAKEEVLCGLVLLVPDELPSITVHFEKGLGQLFLQPS 192

Query: 66  TGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRY 103
           TG D  ++      L+L    +  ++S  +   D    
Sbjct: 193 TGIDFSVMSIDDLSLSLDRRVYPLSISAEVQPSDVVES 230


>gnl|CDD|144928 pfam01515, PTA_PTB, Phosphate acetyl/butaryl transferase.  This
           family contains both phosphate acetyltransferase and
           phosphate butaryltransferase. These enzymes catalyse the
           transfer of an acetyl or butaryl group to
           orthophosphate.
          Length = 319

 Score = 26.5 bits (59), Expect = 9.2
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 202 FLERRPHDGNLFKIADR-MKDNSAVAFMM 229
           F E R H G   +IA   ++D +  A M+
Sbjct: 83  FYELRKHKGMTPEIAREIVRDPTYFAAML 111


>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
           kinase adapter protein alpha.  Protein Kinase family,
           STE20-related kinase adapter protein (STRAD) alpha
           subfamily, pseudokinase domain. The STRAD alpha
           subfamily is part of a larger superfamily that includes
           the catalytic domains of serine/threonine kinases
           (STKs), protein tyrosine kinases, RIO kinases,
           aminoglycoside phosphotransferase, choline kinase, and
           phosphoinositide 3-kinase. The pseudokinase domain shows
           similarity to protein kinases but lacks crucial residues
           for catalytic activity. STRAD forms a complex with the
           scaffolding protein MO25, and the STK, LKB1, resulting
           in the activation of the kinase. In the complex, LKB1
           phosphorylates and activates adenosine
           monophosphate-activated protein kinases (AMPKs), which
           regulate cell energy metabolism and cell polarity. LKB1
           is a tumor suppressor linked to the rare inherited
           disease, Peutz-Jeghers syndrome, which is characterized
           by a predisposition to benign polyps and
           hyperpigmentation of the buccal mucosa. There are two
           forms of STRAD, alpha and beta, that complex with LKB1
           and MO25. The structure of STRAD-alpha is available and
           shows that this protein binds ATP, has an ordered
           activation loop, and adopts a closed conformation
           typical of fully active protein kinases. It does not
           possess activity due to nonconservative substitutions of
           essential catalytic residues. ATP binding enhances the
           affinity of STRAD for MO25.  The conformation of
           STRAD-alpha, stabilized through ATP and MO25, may be
           needed to activate LKB1. A mutation which results in a
           truncation of a C-terminal part of the human STRAD-alpha
           pseudokinase domain and disrupts its association with
           LKB1, leads to PMSE (polyhydramnios, megalencephaly,
           symptomatic epilepsy) syndrome. Several splice variants
           of STRAD-alpha exist which exhibit different effects on
           the localization and activation of LKB1.
          Length = 327

 Score = 26.1 bits (57), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 175 HNF-EQSLQLLLSKRTDATMIPDIPFFNFLERRPHD 209
           H+F EQ LQ     R  A+ + +  FF  ++RR  +
Sbjct: 284 HHFVEQCLQRNPDARPSASTLLNHSFFKQIKRRASE 319


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.327    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0764    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,426,716
Number of extensions: 182060
Number of successful extensions: 825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 34
Length of query: 274
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,275,709
Effective search space: 778179038
Effective search space used: 778179038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)