RPSBLAST alignment of GI: 254781112 and protein with PDBid: 1yae

>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312

 Score = 99.3 bits (246), Expect = 8e-22
 Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 63/280 (22%)

Query: 43  LRVGTDGIYPPHSFHAQD-----GRGELTGFDIDLIKEVAHRLNLKVEFFE--------- 88
           L V T  +  P+    +      G     G+ IDL++E++  L    E            
Sbjct: 15  LIVTTI-LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQ 73

Query: 89  ----TAVSGLITGLDTNRYDVLVN-VAITPERQKKYDFSIPYIAHRVLLVVRSD------ 137
                  +G++  L  ++ D+ V  +AIT  R+K  DFS P++   + ++ R        
Sbjct: 74  DDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPG 133

Query: 138 ------------------QQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHN--- 176
                             +  I S  DL  +T  +    +        K   + +++   
Sbjct: 134 VFSFLNGGSLVPRGSERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMW 193

Query: 177 ------------FEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSA 224
                             +     +D   + +     F+ +R  +         + D+  
Sbjct: 194 AFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCN---LTQIGGLIDSKG 250

Query: 225 VAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264
                  G +     I   +  +  +G    + ++++  N
Sbjct: 251 YGVGTPMG-SPYRDKITIAILQLQEEGKLHMMKEKWWRGN 289