RPSBLAST alignment of GI: 254781112 and protein with PDBid: 3del

>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis} Length = 242
 Score =  124 bits (312), Expect = 2e-29
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 4/225 (1%)

Query: 43  LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNR 102
             VGT+  YPP  F   D RGE+ GFDIDL +E++++L   ++  E +   LI  L  +R
Sbjct: 13  FIVGTNATYPPFEF--VDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHR 70

Query: 103 YDVL-VNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLS 161
            D +   ++ITP R K+      Y      LV+    ++         ++VA   GT   
Sbjct: 71  IDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQE 130

Query: 162 RFAKEL-KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMK 220
            + + L + H+    +  + L  ++  ++   ++        L+  P            +
Sbjct: 131 AYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQ 190

Query: 221 DNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265
                   +      L   I   +  I  +G   ++  ++   N+
Sbjct: 191 WVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNL 235