HHsearch alignment for GI: 254781113 and conserved domain: COG1176
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].
Probab=99.82 E-value=3.4e-18 Score=118.60 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122----------33321
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYG----------LPHIG 85 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~----------~~~~g 85 (226)
T Consensus 63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll~lvi-lPfwts~LiR~yawi~iL~~~G~iN~~L~~lG 141 (287)
T COG1176 63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVI-LPFWTSLLIRTYAWIVILGRNGLINQALLALG 141 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 89999999999999999999999999999999677379999999999-99989999999999999834771648899768
Q ss_pred CC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01------443333331001100000157899988752833689986517463565778752235764456778788987
Q gi|254781113|r 86 IV------FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISI 159 (226)
Q Consensus 86 ~~------~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~l 159 (226)
T Consensus 142 l~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVFi~a 221 (287)
T COG1176 142 LIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPA 221 (287)
T ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHH
T ss_conf 87886798805336768999986599999999999839978999998759976547642032177189999999998977
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 52679999976999999999998323--577999999999999999999
Q gi|254781113|r 160 LKSTSVASTITIPEIFQTAQRIVSTT--YQPLIIYCELAFVYLILTSFC 206 (226)
Q Consensus 160 ik~tsl~s~ig~~el~~~a~~i~~~~--~~~~~~~~~~~~i~l~i~~~~ 206 (226)
T Consensus 222 lG~fi~P~lLGG~~~~~ig~lI~~q~~~~~nwp~asA~sv~L~~i~~~~ 270 (287)
T COG1176 222 LGSFVTPALLGGPKVLMIGNLIYQQFLSARNWPFASALAVVLLLVVLLL 270 (287)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 5889988985697525399999999852058447899999999999999