HHsearch alignment for GI: 254781113 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.93 E-value=5.1e-24 Score=150.61 Aligned_cols=211 Identities=13% Similarity=0.182 Sum_probs=149.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73089999999999999999999999999999999999999999970676379999999999985553222222111223
Q gi|254781113|r 2 KYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL 81 (226)
Q Consensus 2 ~~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~ 81 (226)
T Consensus 50 Sl~WY~~l~~~~--~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~-~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f 126 (267)
T COG1177 50 SLKWYGALFSDP--RLLSALWNSLLIALLSALLATLLGTLAALALARY-RFRGKNLLEGLILLPLVVPDIVTGIALLLLF 126 (267)
T ss_pred CHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 889999985784--8999999999999999999999999999999970-4026899999997424150999999999999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33210144333333100110000015789998875283368998651746356577875223576445677878898752
Q gi|254781113|r 82 PHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILK 161 (226)
Q Consensus 82 ~~~g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik 161 (226)
T Consensus 127 ~~~~-~~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~D 205 (267)
T COG1177 127 AALG-LPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFD 205 (267)
T ss_pred HHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9868-875299999999999866899999999973896799999876998888989976975279999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999976999999999998323577-9999999999999999999999999998
Q gi|254781113|r 162 STSVASTITIPEIFQTAQRIVSTTYQP-LIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 162 ~tsl~s~ig~~el~~~a~~i~~~~~~~-~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
T Consensus 206 efvit~f~~gp~~~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~~~~~~~ 261 (267)
T COG1177 206 EFVITFFLAGPGFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRLLRR 261 (267)
T ss_pred HHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77863113289987218999998655898199999999999999999999998643