HHsearch alignment for GI: 254781113 and conserved domain: COG4135
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=98.47 E-value=7.7e-06 Score=50.78 Aligned_cols=138 Identities=14% Similarity=0.249 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
Q ss_conf 9999999999999999999999999999999999997067637999999999998555322222211122333210---1
Q gi|254781113|r 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI---V 87 (226)
Q Consensus 11 ~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~---~ 87 (226)
T Consensus 341 ~~~P~~l-~n~~T~vllAlsasslALll~iL~le---~~~~-~qR~~~--~~~l--~LP~LlP~lslvfG~qvL~L~~~l 411 (551)
T COG4135 341 NSLPEAL-INSLTMVLLALSASSLALLLLILWLE---WGGI-PQRRQA--YLWL--WLPILLPALSLVFGQQVLALWLGL 411 (551)
T ss_pred HHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHH---HCCC-CHHCCH--HHHH--HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7559998-74565999997204599999999999---5798-320110--6888--888876677899889999999626
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4433333310011000001578999887528336899865174635657787522357644567787889
Q gi|254781113|r 88 FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFI 157 (226)
Q Consensus 88 ~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i 157 (226)
T Consensus 412 ~~~w~~Vvw~H~~fv~P~v~l~Ls~pWq~~dsrf~kIA~~lGks~~~Iff~vklPLlfra~L~A~AVGfa 481 (551)
T COG4135 412 DGSWTAVVWGHLLFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFAVGFS 481 (551)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 8743999999999999999998474575527089999987083066788875045767999999998767