HHsearch alignment for GI: 254781113 and conserved domain: PRK09471
>PRK09471 oppB oligopeptide transporter permease; Reviewed.
Probab=99.72 E-value=1e-15 Score=105.04 Aligned_cols=204 Identities=16% Similarity=0.251 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHH
Q ss_conf 99999999999999999999999999999999997067637999999999998555322222--211122-----33321
Q gi|254781113|r 13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYG-----LPHIG 85 (226)
Q Consensus 13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~-----~~~~g 85 (226)
T Consensus 86 V~~~i~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~iF~~~l~~~P~~g 165 (306)
T PRK09471 86 VNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVMIFAIILHWLPGGG 165 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89999988899999999999999999999999999834751619999999999998999999999889997217637788
Q ss_pred CCCC---CCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0144---3333331001100000157899988-75283368998651746356577875223576445677878898752
Q gi|254781113|r 86 IVFD---SFVAIIISLTLNFSAYISEIIRSSI-ISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILK 161 (226)
Q Consensus 86 ~~~~---~~~~~ii~l~l~~~~~~~~i~r~~l-~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik 161 (226)
T Consensus 166 ~~~~~~~~liLP~~~l~l~~~~~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~ 245 (306)
T PRK09471 166 WNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIIT 245 (306)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87520788753699999999999999999999999877999999986998400730012984299999999999999845
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67999----9976999999999998323577999-999999999999999999999999862
Q gi|254781113|r 162 STSVA----STITIPEIFQTAQRIVSTTYQPLII-YCELAFVYLILTSFCYIIQIKIESSVT 218 (226)
Q Consensus 162 ~tsl~----s~ig~~el~~~a~~i~~~~~~~~~~-~~~~~~i~l~i~~~~~~l~~~lerr~~ 218 (226)
T Consensus 246 GsvivE~iF~~PGiG~l~~~A--i~~~D~p~v~g~~l~~a~~~i~~nll~Dil~~~lDPRiR 305 (306)
T PRK09471 246 GSMVIETIFGLPGIGQLFVNG--ALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305 (306)
T ss_pred CHHHHHHHHCCCCHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 871210986476759999999--980498999999999999999999999999997297558