HHsearch alignment for GI: 254781113 and conserved domain: PRK10683
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional.
Probab=99.90 E-value=2.5e-22 Score=141.30 Aligned_cols=201 Identities=16% Similarity=0.229 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q ss_conf 999999999999999999999999999999997067637999999999998555322222211122333----------2
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPH----------I 84 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~----------~ 84 (226)
T Consensus 93 ~~y~~a~~nSL~iA~~sT~i~lliG~P~Ay~iar~~~~~-r~~l~~lvilP~~~s~lVr~~aw~~iL~~~G~ln~~L~~l 171 (317)
T PRK10683 93 PLYFDAYLQSLQVAAISTICCLLIGYPLAWAVAHSKPST-RNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWL 171 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 789999999999999999999999999999999388617-8999999999970679999999999973143487899996
Q ss_pred HCC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101------44333333100110000015789998875283368998651746356577875223576445677878898
Q gi|254781113|r 85 GIV------FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFIS 158 (226)
Q Consensus 85 g~~------~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~ 158 (226)
T Consensus 172 Gli~~pl~ll~t~~aViig~v~~~lPfmvL~l~a~L~~id~~L~EAA~~LGAs~~~~F~~VtLPL~~PGIiag~lLvFi~ 251 (317)
T PRK10683 172 GVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIP 251 (317)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEEECCCHHHHHHHHHHHHHH
T ss_conf 04467632256458999999999999999999999985890899999876998655400232062189999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75267999997699999999999832--35779999999999999999999999999998
Q gi|254781113|r 159 ILKSTSVASTITIPEIFQTAQRIVST--TYQPLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 159 lik~tsl~s~ig~~el~~~a~~i~~~--~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
T Consensus 252 a~g~F~iP~lLGG~~~~~i~~~i~~~f~~~~dwp~aaAlavvLl~i~iv~~~~~~r~~~k 311 (317)
T PRK10683 252 AVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQK 311 (317)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988877686642998562999999999874680589999999999999999999999887