HHsearch alignment for GI: 254781113 and conserved domain: TIGR01097
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=99.80 E-value=1.6e-18 Score=120.49 Aligned_cols=187 Identities=12% Similarity=0.185 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999999999999999997--0676379999999999985553222222111223332101443333331
Q gi|254781113|r 19 AAIVVTLPIACISFVISLIIGFFIAVIRI--FFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIII 96 (226)
Q Consensus 19 ~~l~~Tl~~~~~~~~i~~~lg~~la~~~~--~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~ii 96 (226)
T Consensus 3 ~~M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~-----~~~LGP~-~~~~ 76 (192)
T TIGR01097 3 TKMLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLV-----ILSLGPI-AAVL 76 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCH-HHHH
T ss_conf 689999999999999999999999998675258884210478999999977679999999999-----9950518-9999
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00110000015789998875283368998651746356577875223576445677878898752679999976999999
Q gi|254781113|r 97 SLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQ 176 (226)
Q Consensus 97 ~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~el~~ 176 (226)
T Consensus 77 A~~IHT~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVlP~l~SY~L~RlE~NVR~~T~~G~VG~GGIG~ 156 (192)
T TIGR01097 77 ALFIHTIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVLPLLISYFLLRLEINVRAATVVGAVGAGGIGV 156 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999998999999999861589897665233303788999601026768899999999988655556530447872768
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999983235779999999999999999999999999
Q gi|254781113|r 177 TAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKI 213 (226)
Q Consensus 177 ~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~l 213 (226)
T Consensus 157 ~L~~~-I~~~~-~~~T~A~~~L~~~T~~~~D~lS~~L 191 (192)
T TIGR01097 157 LLRLA-IRQFQ-EAKTLALVLLLIVTVFLLDFLSARL 191 (192)
T ss_pred HHHHH-HHCCH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998-60330-6889999999999999999987740