HHsearch alignment for GI: 254781113 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.90 E-value=2.8e-22 Score=141.03 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222--2111223332101443333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~~~~~g~~~~~~~~ 93 (226)
T Consensus 83 G~W~~am~Tlalv~~av~la~~iGiPlGI~~--~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~--------~~ 152 (267)
T TIGR03416 83 GYWEETVETLALVLSATVVCMVIGVPLGIAA--AHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGM--------VP 152 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC--------HH
T ss_conf 1589999999999999999999999999999--8169999999999987431546799999999948870--------56
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33100110000015789998875283368998651746356577875223576445677878898752679999976999
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~e 173 (226)
T Consensus 153 aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~G 232 (267)
T TIGR03416 153 GLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADG 232 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999988999999999985676899999983998988979941841589999999999999999999999967885
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781113|r 174 IFQTA 178 (226)
Q Consensus 174 l~~~a 178 (226)
T Consensus 233 LG~~v 237 (267)
T TIGR03416 233 LGVPV 237 (267)
T ss_pred CHHHH
T ss_conf 36999