HHsearch alignment for GI: 254781113 and conserved domain: TIGR03416

>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.90  E-value=2.8e-22  Score=141.03  Aligned_cols=153  Identities=19%  Similarity=0.229  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999999999999999999999999997067637999999999998555322222--2111223332101443333
Q gi|254781113|r   16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYGLPHIGIVFDSFVA   93 (226)
Q Consensus        16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~~~~~g~~~~~~~~   93 (226)
T Consensus        83 G~W~~am~Tlalv~~av~la~~iGiPlGI~~--~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~--------~~  152 (267)
T TIGR03416        83 GYWEETVETLALVLSATVVCMVIGVPLGIAA--AHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGM--------VP  152 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC--------HH
T ss_conf             1589999999999999999999999999999--8169999999999987431546799999999948870--------56


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33100110000015789998875283368998651746356577875223576445677878898752679999976999
Q gi|254781113|r   94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE  173 (226)
Q Consensus        94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~e  173 (226)
T Consensus       153 aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~G  232 (267)
T TIGR03416       153 GLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADG  232 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999988999999999985676899999983998988979941841589999999999999999999999967885


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254781113|r  174 IFQTA  178 (226)
Q Consensus       174 l~~~a  178 (226)
T Consensus       233 LG~~v  237 (267)
T TIGR03416       233 LGVPV  237 (267)
T ss_pred             CHHHH
T ss_conf             36999