HHSEARCH alignment of GI: 254781113 and SCOP domain: d2r6gf2

Alignment
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=99.82  E-value=1.8e-19  Score=123.18  Aligned_cols=156  Identities=16%  Similarity=0.173  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------
Q ss_conf             999999999999999999999999999999999706763799999999999855532222221112233-321-------
Q gi|254781113|r   14 PQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLP-HIG-------   85 (226)
Q Consensus        14 ~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~-~~g-------   85 (226)
                      .+.+++.+++|+..+++++++++++|.++|.... +.+...+...+....+...+|..+..+.+.+... ..|       
T Consensus        14 ~~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~-~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~~~l~   92 (244)
T d2r6gf2          14 QKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQ-WEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLS   92 (244)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             9999999999999999999999999999999998-474204789999999999840889999999987523551466665


Q ss_pred             ---CCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---014--------433333310011000001578999887528336899865174635657787522357644567787
Q gi|254781113|r   86 ---IVF--------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSS  154 (226)
Q Consensus        86 ---~~~--------~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~  154 (226)
                         ...        ..+...+++..+...|+...+++++++++|++++|||+.+|+|+||++|||++|+..|.+......
T Consensus        93 ~~~~~~~~~~~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~p~i~~~~il  172 (244)
T d2r6gf2          93 ALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIA  172 (244)
T ss_dssp             HTSSCCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             53026774101277999999999999710277999999997599999899997499765774999854468999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8898752679999976
Q gi|254781113|r  155 EFISILKSTSVASTIT  170 (226)
Q Consensus       155 ~~i~lik~tsl~s~ig  170 (226)
                      .++..+++-.....++
T Consensus       173 ~fi~~~~~f~~~~~l~  188 (244)
T d2r6gf2         173 SFAFNFNNFVLIQLLT  188 (244)
T ss_dssp             HHHHHHTCHHHHHHHC
T ss_pred             HHHHHCCHHHHHHHHC
T ss_conf             9999720056764425


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Maltose transport system permease protein MalF
species: Escherichia coli [TaxId: 562]