BLAST/PSIBLAST alignment of GI: 254781113 and GI: 163857187 at iteration 1
>gi|163857187|ref|YP_001631485.1| putative amino-acid ABC transporter, permease protein [Bordetella petrii DSM 12804] Length = 226
>gi|163260915|emb|CAP43217.1| putative amino-acid ABC transporter, permease protein [Bordetella petrii] Length = 226
 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/217 (49%), Positives = 152/217 (70%), Gaps = 1/217 (0%)

Query: 5   WFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWI 64
           W  L+IDSF  LL+A +V T+P+  +SF   L++ F +A+IR+F    +++L+  FYVW+
Sbjct: 4   WLQLMIDSFWPLLHAGLVFTVPLTLLSFAGGLVLAFIVALIRLFGPAPLVALV-RFYVWL 62

Query: 65  FRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDA 124
            RGTPLLVQLFVIFYGLP +GIV D   A +I  TLN  AY SE+IR +I SIPKGQW+A
Sbjct: 63  IRGTPLLVQLFVIFYGLPSVGIVLDPLPAALIGFTLNVGAYNSEVIRGAIESIPKGQWEA 122

Query: 125 SYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVST 184
           +Y++ +TR Q +R  +LPQ    +  PL++ FIS++K TS+A+ +T+PEIFQ AQRI + 
Sbjct: 123 AYSLSMTRGQAMRRTVLPQAARVAVPPLANSFISLVKDTSLAAVLTVPEIFQAAQRIAAV 182

Query: 185 TYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHT 221
           TY+PLI+Y E A +YL+ +S     Q ++E    QH 
Sbjct: 183 TYEPLILYTEAALIYLVFSSALSAAQTRLERRYGQHA 219