RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781113|ref|YP_003065526.1| amino acid ABC transporter
(permease) [Candidatus Liberibacter asiaticus str. psy62]
(226 letters)
>3dhw_A D-methionine transport system permease protein METI;
ABC-transporter, methionine uptake transporter, membrane
protein, amino-acid transport; 3.70A {Escherichia coli
K12} (A:)
Length = 217
Score = 83.9 bits (207), Expect = 2e-17
Identities = 36/200 (18%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 16 LLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWIFRGTP 69
LL + TL + +S +IG + V+ ++ + + V IFR P
Sbjct: 8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIP 67
Query: 70 LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIG 129
++ L + I A I+ LT+ + +I+ ++ ++++ IP G +AS A+G
Sbjct: 68 FIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPL 189
T Q +R ++LP+ + + I+++ +++ + + Q + Y
Sbjct: 128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 187
Query: 190 IIYCELAFVYLILTSFCYII 209
++ L + +++ +
Sbjct: 188 VMNTVLVLLVILVYLIQFAG 207
>2r6g_F Maltose transport system permease protein MALF; ABC
transporter, catalytic intermediate, E. coli maltose
transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
K12} (F:269-326,F:360-453)
Length = 152
Score = 59.8 bits (145), Expect = 3e-10
Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 15/154 (9%)
Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFV 76
A V T+ + I+ +++ +G +A + + + RG + L +
Sbjct: 9 FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEA--------------LRGKAVYRVLLI 54
Query: 77 IFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTI 136
+ Y + +II T Y+ + + +IP ++AS G Q
Sbjct: 55 LPYAAWFSDPTT-ARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNF 113
Query: 137 RHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170
I LP I + + F + + +T
Sbjct: 114 FKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLT 147
>3d31_C Sulfate/molybdate ABC transporter, permease protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} (C:)
Length = 295
Score = 55.1 bits (132), Expect = 7e-09
Identities = 22/207 (10%), Positives = 70/207 (33%), Gaps = 9/207 (4%)
Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAVI---------RIFFSDTIISLIMHFYVWIFRG 67
+ ++I ++L ++ +++L++G I R+ S + +++ V
Sbjct: 80 VISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIAL 139
Query: 68 TPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYA 127
+ +I L D+ I++++ Y++ R S+ +A+ +
Sbjct: 140 LTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARS 199
Query: 128 IGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQ 187
+G + + LP + + + + + +
Sbjct: 200 LGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISY 259
Query: 188 PLIIYCELAFVYLILTSFCYIIQIKIE 214
L +A + +++T +++ +
Sbjct: 260 GLSASRPIAVLLILVTLSIFLVIRTLS 286
>2onk_C Molybdate/tungstate ABC transporter, permease protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(C:69-249)
Length = 181
Score = 48.8 bits (116), Expect = 7e-07
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 9/162 (5%)
Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFV 76
++ ++ T A IS +I++I G +A I S S++ V + P V
Sbjct: 2 VWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVE-GIVDLPVVIPHTVAGIA 60
Query: 77 IFYGLPHIG--------IVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAI 128
+ G D+ I++++ + S+ + +
Sbjct: 61 LLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTL 120
Query: 129 GLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170
G + + + LP ++ + + I
Sbjct: 121 GSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA 162
>2r6g_G Maltose transport system permease protein MALG; ABC
transporter, catalytic intermediate, E. coli maltose
transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
K12} (G:73-244)
Length = 172
Score = 41.0 bits (96), Expect = 1e-04
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 3/157 (1%)
Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAVI---RIFFSDTIISLIMHFYVWIFRGTPLLVQ 73
+ + ++ +A IS + + + A F + M + L+
Sbjct: 9 VLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVAL 68
Query: 74 LFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRK 133
+ +I + + +I L A I+ +I +A+ G T
Sbjct: 69 YALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPW 128
Query: 134 QTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170
Q R ++LP ++ AV FI+ + VAS +
Sbjct: 129 QAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLL 165
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(A:550-614)
Length = 65
Score = 29.3 bits (65), Expect = 0.48
Identities = 3/6 (50%), Positives = 6/6 (100%)
Query: 209 IQIKIE 214
+++KIE
Sbjct: 2 VEVKIE 7
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(B:550-611)
Length = 62
Score = 28.9 bits (64), Expect = 0.62
Identities = 3/6 (50%), Positives = 6/6 (100%)
Query: 209 IQIKIE 214
+++KIE
Sbjct: 2 VEVKIE 7
>1cvu_A Prostaglandin H2 synthase-2; COX-2, cyclooxygenase,
prostaglandin, arachidonate, endoperoxide,
oxidoreductase; HET: NAG MAN BOG ACD; 2.40A {Mus
musculus} (A:158-334,A:514-552)
Length = 216
Score = 27.3 bits (60), Expect = 1.6
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 173 EIFQTAQRIVSTTYQPLIIY 192
++FQT++ I+ ++I
Sbjct: 139 QLFQTSKLILIGETIKIVIE 158
>1bml_C Streptokinase; human plasmin; 2.90A {Streptococcus
equisimilis} (C:141-274)
Length = 134
Score = 27.1 bits (60), Expect = 1.9
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 18/62 (29%)
Query: 158 SILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217
+LK+ ++ TIT E+ AQ I++ T+ Y I + S V
Sbjct: 32 KLLKTLAIGDTITSQELLAQAQSILNKTHPG------------------YTIYERDSSIV 73
Query: 218 TQ 219
T
Sbjct: 74 TH 75
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-
bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo
sapiens} (C:105-185,C:404-466)
Length = 144
Score = 26.7 bits (59), Expect = 2.6
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 173 EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFC 206
++Q A++IV Q +I Y + YL F
Sbjct: 59 RLYQEARKIVGAMVQ-IITYRD----YLNEGVFS 87
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen
activation, fibrinolysis, hydrolase activator; 2.30A
{Streptococcus dysgalactiae subsp} (A:)
Length = 138
Score = 26.3 bits (58), Expect = 3.7
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 18/62 (29%)
Query: 158 SILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217
+LK+ ++ TIT E+ AQ I++ + Y I + S V
Sbjct: 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPG------------------YTIYERDSSIV 74
Query: 218 TQ 219
T
Sbjct: 75 TH 76
>2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein;
HET: NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A*
2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A*
3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A*
3faq_A* 2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ...
(A:221-405,A:520-583)
Length = 249
Score = 25.0 bits (54), Expect = 8.9
Identities = 5/22 (22%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 173 EIFQTAQRIVSTTYQPLIIYCE 194
+++Q A++I+ Q +I + +
Sbjct: 59 KLYQEARKILGAFIQ-IITFRD 79
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.332 0.144 0.423
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,623,416
Number of extensions: 65974
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 30
Length of query: 226
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 141
Effective length of database: 2,082,624
Effective search space: 293649984
Effective search space used: 293649984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.8 bits)