RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] (226 letters) >d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 Score = 65.1 bits (158), Expect = 4e-12 Identities = 36/199 (18%), Positives = 84/199 (42%), Gaps = 6/199 (3%) Query: 16 LLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWIFRGTP 69 LL + TL + +S +IG + V+ ++ + + V IFR P Sbjct: 3 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIP 62 Query: 70 LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIG 129 ++ L + I A I+ LT+ + +I+ ++ ++++ IP G +AS A+G Sbjct: 63 FIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 122 Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPL 189 T Q +R ++LP+ + + I+++ +++ + + Q + Y Sbjct: 123 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 182 Query: 190 IIYCELAFVYLILTSFCYI 208 ++ L + +++ + Sbjct: 183 VMNTVLVLLVILVYLIQFA 201 >d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Length = 244 Score = 30.3 bits (67), Expect = 0.13 Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 18/200 (9%) Query: 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVI------------------RIFFSDT 52 + + A V T+ + I+ +++ +G +A + Sbjct: 11 EGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSF 70 Query: 53 IISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRS 112 I LI G ++ + + +II T Y+ + Sbjct: 71 ISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMG 130 Query: 113 SIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP 172 + +IP ++AS G Q I LP I + + F + + +T Sbjct: 131 LLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNG 190 Query: 173 EIFQTAQRIVSTTYQPLIIY 192 + + L+ Y Sbjct: 191 GPDRLGTTTPAGYTDLLVNY 210 >d1qqra_ d.15.5.1 (A:) Streptokinase {Streptococcus equisimilis [TaxId: 119602]} Length = 138 Score = 27.2 bits (60), Expect = 1.1 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 18/62 (29%) Query: 158 SILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217 +LK+ ++ TIT E+ AQ I++ + Y I + S V Sbjct: 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPG------------------YTIYERDSSIV 74 Query: 218 TQ 219 T Sbjct: 75 TH 76 >d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Length = 511 Score = 25.7 bits (56), Expect = 3.1 Identities = 5/20 (25%), Positives = 12/20 (60%) Query: 173 EIFQTAQRIVSTTYQPLIIY 192 ++FQT++ I+ ++I Sbjct: 255 QLFQTSKLILIGETIKIVIE 274 >d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Length = 319 Score = 25.3 bits (55), Expect = 4.4 Identities = 7/37 (18%), Positives = 13/37 (35%) Query: 174 IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQ 210 I Q A R + L I ++A +++ Sbjct: 94 ILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK 130 >d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} Length = 511 Score = 25.3 bits (55), Expect = 4.5 Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 EIFQTAQRIVSTTYQPLIIY 192 ++FQTA+ I+ ++I Sbjct: 254 QLFQTARLILIGETIKIVIE 273 >g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 570 Score = 25.1 bits (54), Expect = 5.0 Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Query: 173 EIFQTAQRIVSTTYQPLIIYCE 194 ++Q A++IV Q +I Y + Sbjct: 267 RLYQEARKIVGAMVQ-IITYRD 287 >d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human (Homo sapiens) [TaxId: 9606]} Length = 392 Score = 24.9 bits (54), Expect = 6.1 Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 12/66 (18%) Query: 2 KYEWFNLIIDSFPQLLYA----AIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLI 57 Y + I P L+ + V L + I + R+ + I Sbjct: 24 FYNDWMFIAKHLPDLIESGQLRERVEKLNMLSIDHLTD------HKSQRLARLV--LGCI 75 Query: 58 MHFYVW 63 YVW Sbjct: 76 TMAYVW 81 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.332 0.144 0.423 Gapped Lambda K H 0.267 0.0517 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 828,544 Number of extensions: 36441 Number of successful extensions: 105 Number of sequences better than 10.0: 1 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 20 Length of query: 226 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 144 Effective length of database: 1,281,736 Effective search space: 184569984 Effective search space used: 184569984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 51 (23.9 bits)