RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781113|ref|YP_003065526.1| amino acid ABC transporter
(permease) [Candidatus Liberibacter asiaticus str. psy62]
         (226 letters)



>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
           protein MetI {Escherichia coli [TaxId: 562]}
          Length = 203

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 36/199 (18%), Positives = 84/199 (42%), Gaps = 6/199 (3%)

Query: 16  LLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWIFRGTP 69
           LL   +  TL +  +S     +IG  + V+          ++  +   +   V IFR  P
Sbjct: 3   LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIP 62

Query: 70  LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIG 129
            ++ L  +      I        A I+ LT+  + +I+ ++ ++++ IP G  +AS A+G
Sbjct: 63  FIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 122

Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPL 189
            T  Q +R ++LP+ +       +   I+++  +++   +    + Q   +     Y   
Sbjct: 123 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 182

Query: 190 IIYCELAFVYLILTSFCYI 208
           ++   L  + +++    + 
Sbjct: 183 VMNTVLVLLVILVYLIQFA 201


>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 30.3 bits (67), Expect = 0.13
 Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 18/200 (9%)

Query: 11  DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVI------------------RIFFSDT 52
           +   +   A  V T+  + I+  +++ +G  +A +                         
Sbjct: 11  EGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSF 70

Query: 53  IISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRS 112
           I  LI         G   ++   +             +   +II  T     Y+  +   
Sbjct: 71  ISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMG 130

Query: 113 SIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP 172
            + +IP   ++AS   G    Q    I LP  I      + + F     +  +   +T  
Sbjct: 131 LLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNG 190

Query: 173 EIFQTAQRIVSTTYQPLIIY 192
              +      +     L+ Y
Sbjct: 191 GPDRLGTTTPAGYTDLLVNY 210


>d1qqra_ d.15.5.1 (A:) Streptokinase {Streptococcus equisimilis
           [TaxId: 119602]}
          Length = 138

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 18/62 (29%)

Query: 158 SILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217
            +LK+ ++  TIT  E+   AQ I++  +                    Y I  +  S V
Sbjct: 33  KLLKTLAIGDTITSQELLAQAQSILNKNHPG------------------YTIYERDSSIV 74

Query: 218 TQ 219
           T 
Sbjct: 75  TH 76


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score = 25.7 bits (56), Expect = 3.1
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 173 EIFQTAQRIVSTTYQPLIIY 192
           ++FQT++ I+      ++I 
Sbjct: 255 QLFQTSKLILIGETIKIVIE 274


>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
           (porphobilinogen synthase) {Prosthecochloris
           vibrioformis [TaxId: 1098]}
          Length = 319

 Score = 25.3 bits (55), Expect = 4.4
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 174 IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQ 210
           I Q A R +      L I  ++A           +++
Sbjct: 94  ILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK 130


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score = 25.3 bits (55), Expect = 4.5
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 173 EIFQTAQRIVSTTYQPLIIY 192
           ++FQTA+ I+      ++I 
Sbjct: 254 QLFQTARLILIGETIKIVIE 273


>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score = 25.1 bits (54), Expect = 5.0
 Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 173 EIFQTAQRIVSTTYQPLIIYCE 194
            ++Q A++IV    Q +I Y +
Sbjct: 267 RLYQEARKIVGAMVQ-IITYRD 287


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 24.9 bits (54), Expect = 6.1
 Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 12/66 (18%)

Query: 2  KYEWFNLIIDSFPQLLYA----AIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLI 57
           Y  +  I    P L+ +      V  L +  I  +            R+      +  I
Sbjct: 24 FYNDWMFIAKHLPDLIESGQLRERVEKLNMLSIDHLTD------HKSQRLARLV--LGCI 75

Query: 58 MHFYVW 63
             YVW
Sbjct: 76 TMAYVW 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.144    0.423 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 828,544
Number of extensions: 36441
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 20
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.9 bits)