HHsearch alignment for GI: 254781114 and conserved domain: COG3306
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=1.8e-43 Score=269.82 Aligned_cols=211 Identities=24% Similarity=0.264 Sum_probs=164.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHHH-HCCHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9886899808998899999999998779-97899966373528967742-020000246788788789999999999999
Q gi|254781114|r 1 MPIPVYVISLPFSHARREKFCHRAARIH-LQFSFFDAIYGENNPICNRI-FSHQKRQCQFKRLLSLPEIGCYISHIHLWK 78 (263)
Q Consensus 1 m~~kiyvInL~~~~~Rr~~~~~~~~~~g-i~~e~~~Avdg~~~~~~~~~-~~~~~~~~~~~~~l~~geigC~lSH~~~w~ 78 (263)
T Consensus 1 ~~~~~~vIsL~~s~~R~~~~~~~f~~~~~~~f~~~~av~~~~~~~~~~~~~~~~~~~~~~~~~ls~gEiGC~lSH~~lw~ 80 (255)
T COG3306 1 SLMPIHVISLKSSQERLEHVAETFEALGGLPFQRFDAVNGKSEDEKDLIAELDAGHLLYEGRRLSPGEIGCYLSHLKLWK 80 (255)
T ss_pred CCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99632103154428879999998764258882575346853339888722301023455223567116989999999999
Q ss_pred HHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCC-----CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCE
Q ss_conf 9982799859997302213300899999998415-----53775445113665422211234677705899405798512
Q gi|254781114|r 79 RIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCD-----INNILIKFDALRKKPKKDSYLCTLPGNFDIHQPRILSPRTT 153 (263)
Q Consensus 79 ~~~~~~~~~~lIlEDD~~~~~~f~~~l~~~~~~~-----~~~d~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gt~ 153 (263)
T Consensus 81 ~~~~~~~~yi~I~EDDV~l~e~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gt~ 158 (255)
T COG3306 81 KALEENLPYILILEDDVVLGEDFEEFLEDDLKLPVRFLGDDIDIHRLETFLSPNPLAFN--AVFIGRNFPLLNSYHLGTA 158 (255)
T ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CCCCCCCCHHHHHCCCCCC
T ss_conf 99847998489963661035148999999985244323037888998875056522125--3100102111011115744
Q ss_pred EEEECHHHHHHHHHHHCC--CCCHHHHHHHHHHH--CCCCEEEEECCCEECCCCCCCCHHHHHHH
Q ss_conf 356669999999996254--57804688799997--59817999603131267656511332221
Q gi|254781114|r 154 GYFIGKEAAIHLLNVRKN--IYRPIDMDMKHWWE--HNIPSLVTEPGAVYEAIDTNDSTIEESRL 214 (263)
Q Consensus 154 aY~Is~~~AkkLl~~~~~--~~~pvD~~l~~~~~--~~l~~~~~~P~~v~~~~~~~~sti~~~~~ 214 (263)
T Consensus 159 gYiis~~aAk~fl~~~~~~~~~~pvD~~~~~~~~~~~~~~vyq~~p~~~~~~~~-l~s~~~~~r~ 222 (255)
T COG3306 159 GYIISRKAAKKFLELTESFKVVLPVDWFMFLEFLHGVGNKVYQPFPAICAQGSA-LSSILENERD 222 (255)
T ss_pred CEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCCCHHHCC
T ss_conf 323348999999998612365567168876222045676688744651232234-6653143236