HHsearch alignment for GI: 254781114 and conserved domain: cd06532
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=100.00 E-value=7.9e-40 Score=248.80 Aligned_cols=127 Identities=34% Similarity=0.534 Sum_probs=116.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH-HCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 689980899889999999999877997899966373528967742-0200002467887887899999999999999982
Q gi|254781114|r 4 PVYVISLPFSHARREKFCHRAARIHLQFSFFDAIYGENNPICNRI-FSHQKRQCQFKRLLSLPEIGCYISHIHLWKRIAY 82 (263)
Q Consensus 4 kiyvInL~~~~~Rr~~~~~~~~~~gi~~e~~~Avdg~~~~~~~~~-~~~~~~~~~~~~~l~~geigC~lSH~~~w~~~~~ 82 (263)
T Consensus 1 ki~vInL~~~~dR~~~~~~~~~~~~l~~~~~~Avdg~~~~~~~~~~~~~~~~~~~~~~~lt~gEigC~lSH~~~w~~~v~ 80 (128)
T cd06532 1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVE 80 (128)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999898968999999999977698735886034102799999874304344304898874357899999999999997
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECHHHH
Q ss_conf 79985999730221330089999999841553775445113665422211234677705899405798512356669999
Q gi|254781114|r 83 SPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKFDALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFIGKEAA 162 (263)
Q Consensus 83 ~~~~~~lIlEDD~~~~~~f~~~l~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gt~aY~Is~~~A 162 (263)
T Consensus 81 ~~~~~~lIlEDDv~~~~~--------------------------------------------------~t~aY~is~~~A 110 (128)
T cd06532 81 SNLEYALILEDDAILDPD--------------------------------------------------GTAGYLVSRKGA 110 (128)
T ss_pred CCCCEEEEEECCCEECCC--------------------------------------------------CEEEEEECHHHH
T ss_conf 599839998178356799--------------------------------------------------736899789999
Q ss_pred HHHHHHHCCCCCHHHHHH
Q ss_conf 999996254578046887
Q gi|254781114|r 163 IHLLNVRKNIYRPIDMDM 180 (263)
Q Consensus 163 kkLl~~~~~~~~pvD~~l 180 (263)
T Consensus 111 ~klL~~~~~~~~pvD~~~ 128 (128)
T cd06532 111 KKLLAALEPIDLPVDVFL 128 (128)
T ss_pred HHHHHHCCCCCCCCCCCC
T ss_conf 999982787667650419