HHsearch alignment for GI: 254781114 and conserved domain: cd06532

>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=100.00  E-value=7.9e-40  Score=248.80  Aligned_cols=127  Identities=34%  Similarity=0.534  Sum_probs=116.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH-HCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             689980899889999999999877997899966373528967742-0200002467887887899999999999999982
Q gi|254781114|r    4 PVYVISLPFSHARREKFCHRAARIHLQFSFFDAIYGENNPICNRI-FSHQKRQCQFKRLLSLPEIGCYISHIHLWKRIAY   82 (263)
Q Consensus         4 kiyvInL~~~~~Rr~~~~~~~~~~gi~~e~~~Avdg~~~~~~~~~-~~~~~~~~~~~~~l~~geigC~lSH~~~w~~~~~   82 (263)
T Consensus         1 ki~vInL~~~~dR~~~~~~~~~~~~l~~~~~~Avdg~~~~~~~~~~~~~~~~~~~~~~~lt~gEigC~lSH~~~w~~~v~   80 (128)
T cd06532           1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVE   80 (128)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999898968999999999977698735886034102799999874304344304898874357899999999999997


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECHHHH
Q ss_conf             79985999730221330089999999841553775445113665422211234677705899405798512356669999
Q gi|254781114|r   83 SPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKFDALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFIGKEAA  162 (263)
Q Consensus        83 ~~~~~~lIlEDD~~~~~~f~~~l~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gt~aY~Is~~~A  162 (263)
T Consensus        81 ~~~~~~lIlEDDv~~~~~--------------------------------------------------~t~aY~is~~~A  110 (128)
T cd06532          81 SNLEYALILEDDAILDPD--------------------------------------------------GTAGYLVSRKGA  110 (128)
T ss_pred             CCCCEEEEEECCCEECCC--------------------------------------------------CEEEEEECHHHH
T ss_conf             599839998178356799--------------------------------------------------736899789999


Q ss_pred             HHHHHHHCCCCCHHHHHH
Q ss_conf             999996254578046887
Q gi|254781114|r  163 IHLLNVRKNIYRPIDMDM  180 (263)
Q Consensus       163 kkLl~~~~~~~~pvD~~l  180 (263)
T Consensus       111 ~klL~~~~~~~~pvD~~~  128 (128)
T cd06532         111 KKLLAALEPIDLPVDVFL  128 (128)
T ss_pred             HHHHHHCCCCCCCCCCCC
T ss_conf             999982787667650419