Query         gi|254781114|ref|YP_003065527.1| glycosyl transferase family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 263
No_of_seqs    181 out of 1482
Neff          8.8 
Searched_HMMs 13730
Date          Wed Jun  1 11:28:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781114.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1fo8a_ c.68.1.10 (A:) N-acety  97.8 0.00067 4.9E-08   39.0  14.3  189    1-198     1-207 (343)
  2 d1fxoa_ c.68.1.6 (A:) RmlA (Rf  62.8     3.8 0.00028   17.3  13.4  118   78-201    95-224 (292)
  3 d1mc3a_ c.68.1.6 (A:) RffH {Es  46.2     7.2 0.00053   15.7  11.9  111   78-193    95-216 (291)
  4 d1o1ya_ c.23.16.1 (A:) Hypothe  40.3       9 0.00065   15.2   4.7   86    2-91      3-91  (230)
  5 d1qg8a_ c.68.1.1 (A:) Spore co  20.1      21  0.0015   13.1  13.7  181   12-199    11-212 (255)
  6 d1t1va_ c.47.1.14 (A:) SH3BGRL  19.5      21  0.0015   13.0   4.3   36    1-36      2-40  (93)
  7 d1wu7a1 c.51.1.1 (A:330-426) H  14.1      29  0.0021   12.2   3.9   59    3-94      4-63  (97)
  8 d2i15a1 a.291.1.1 (A:1-129) Hy  10.7      22  0.0016   12.9  -0.3   32   70-101    21-52  (129)
  9 d2f06a1 d.58.18.11 (A:71-141)    8.9      44  0.0032   11.2   3.4   35    6-40      2-36  (71)
 10 d1zrra1 b.82.1.6 (A:1-179) Aci   8.6      45  0.0033   11.1   0.8   19   18-36     22-40  (179)

No 1  
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=97.83  E-value=0.00067  Score=38.96  Aligned_cols=189  Identities=11%  Similarity=0.007  Sum_probs=101.9

Q ss_pred             CC-CCEEEEECCCCHHHHHHHHHHHHHC--CC-CEEEEECCCCCCCCHHHH--HHCCHHCC--------CC--CCCCCCH
Q ss_conf             98-8689980899889999999999877--99-789996637352896774--20200002--------46--7887887
Q gi|254781114|r    1 MP-IPVYVISLPFSHARREKFCHRAARI--HL-QFSFFDAIYGENNPICNR--IFSHQKRQ--------CQ--FKRLLSL   64 (263)
Q Consensus         1 m~-~kiyvInL~~~~~Rr~~~~~~~~~~--gi-~~e~~~Avdg~~~~~~~~--~~~~~~~~--------~~--~~~~l~~   64 (263)
                      |+ +||-|+.-.| ++ ..++.+.+-+.  +. .+..+=..||......+.  .+......        ..  ....-..
T Consensus         1 ~~viPVlv~a~NR-P~-l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~~v~~~~~~v~~I~~~~~~~~~~~~~~~k~~   78 (343)
T d1fo8a_           1 LAVIPILVIACDR-ST-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQ   78 (343)
T ss_dssp             CCCCCEEEEESSC-TT-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGH
T ss_pred             CCCCCEEEEECCH-HH-HHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHCCC
T ss_conf             9830489997577-88-999999998427556685389996499545799999988898873077545635421132033


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf             8999999999999999827-9985999730221330089999999841-5537754451136654222112346777058
Q gi|254781114|r   65 PEIGCYISHIHLWKRIAYS-PAIGAIILEDDADFSDEFSQLLPHLSKC-DINNILIKFDALRKKPKKDSYLCTLPGNFDI  142 (263)
Q Consensus        65 geigC~lSH~~~w~~~~~~-~~~~~lIlEDD~~~~~~f~~~l~~~~~~-~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~l  142 (263)
                      |-.||+..=..+..++-+. +.+.++|||||..+.++|.++.+..... ..|-.+....+.+-. . ............+
T Consensus        79 ~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~IS~wNdn-G-~~~~~~~~~~~~l  156 (343)
T d1fo8a_          79 GYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDN-G-KEQMVDSSKPELL  156 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTT-C-BGGGSCTTCTTCE
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCC-C-CCCCCCCCCCCEE
T ss_conf             1167888999999987411577649999257504077999999999997269977999666567-8-8665668987518


Q ss_pred             EEECCCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCE
Q ss_conf             99405798512356669999999996254578046887999975981799960313
Q gi|254781114|r  143 HQPRILSPRTTGYFIGKEAAIHLLNVRKNIYRPIDMDMKHWWEHNIPSLVTEPGAV  198 (263)
Q Consensus       143 ~~~~~~~~gt~aY~Is~~~AkkLl~~~~~~~~pvD~~l~~~~~~~l~~~~~~P~~v  198 (263)
                      ++... ..| -|++.+++.=+.|-.. .| ..-.|.||.......-+ ..+.|-+.
T Consensus       157 yrs~~-fpg-~GW~~~r~~W~el~~k-wp-~~~Wd~w~r~~~~rkgr-~cI~Pevs  207 (343)
T d1fo8a_         157 YRTDF-FPG-LGWLLLAELWAELEPK-WP-KAFWDDWMRRPEQRKGR-ACVRPEIS  207 (343)
T ss_dssp             EEESS-CCC-SSEEEEHHHHHHHGGG-CC-SSCHHHHHTSHHHHTTC-EEEEESSB
T ss_pred             EEECC-CCC-HHHHEEHHHHHHHHHC-CC-CCCCHHHHHHHHHCCCC-EEECCCCC
T ss_conf             86068-872-3322219889875230-78-88707766258763898-36405764


No 2  
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=62.79  E-value=3.8  Score=17.33  Aligned_cols=118  Identities=14%  Similarity=0.181  Sum_probs=59.3

Q ss_pred             HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEE---EE-EC---CCCC
Q ss_conf             99982799859997302213300899999998415537754451136654222112346777058---99-40---5798
Q gi|254781114|r   78 KRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKFDALRKKPKKDSYLCTLPGNFDI---HQ-PR---ILSP  150 (263)
Q Consensus        78 ~~~~~~~~~~~lIlEDD~~~~~~f~~~l~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~l---~~-~~---~~~~  150 (263)
                      +.+++ +.+.++|+=||+++..++.+.++...+...+..+.... ......++  +...+.+..+   .. |.   .+..
T Consensus        95 ~~~i~-~~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~-V~~p~~yG--V~~~d~~~ki~~~~EKP~~p~Snla  170 (292)
T d1fxoa_          95 ESFIG-NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYH-VLDPERYG--VVEFDQGGKAISLEEKPLEPKSNYA  170 (292)
T ss_dssp             HHHHT-TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEE-CSCGGGSE--EEEECTTSCEEEEEESCSSCSSSEE
T ss_pred             HHHCC-CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-CCCHHHCE--EEEECCCCCEEEEEECCCCCCCCCE
T ss_conf             44238-87638997564224869899999998379992899998-99979982--8998689988677878999988837


Q ss_pred             CCEEEEECHHHHHHHHHHHCCCCC----HHHHHHHHHHH-CCCCEEEEECCCEECC
Q ss_conf             512356669999999996254578----04688799997-5981799960313126
Q gi|254781114|r  151 RTTGYFIGKEAAIHLLNVRKNIYR----PIDMDMKHWWE-HNIPSLVTEPGAVYEA  201 (263)
Q Consensus       151 gt~aY~Is~~~AkkLl~~~~~~~~----pvD~~l~~~~~-~~l~~~~~~P~~v~~~  201 (263)
                      -++.|+.+++..+. ++..+|-.+    -.|.. ..+.. +.+.++.+.......+
T Consensus       171 ~~G~Y~f~~~~~~~-~~~l~~s~rgE~eitD~~-~~~l~~~~~~~~~~~~~~~W~D  224 (292)
T d1fxoa_         171 VTGLYFYDQQVVDI-ARDLKPSPRGELEITDVN-RAYLERGQLSVEIMGRGYAWLD  224 (292)
T ss_dssp             EEEEEEECTTHHHH-HHHCCCCTTSSCCHHHHH-HHHHHTTCEEEEECCTTSEEEE
T ss_pred             EEEEEEECHHHHHH-HHHCCCCCCCCHHHHHHH-HHHHHCCCEEEEEECCCCEEEE
T ss_conf             88999978289999-974899887860068889-9999719847998179977884


No 3  
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Probab=46.18  E-value=7.2  Score=15.72  Aligned_cols=111  Identities=15%  Similarity=0.126  Sum_probs=56.2

Q ss_pred             HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE-------CCCCC
Q ss_conf             99982799859997302213300899999998415537754451136654222112346777058994-------05798
Q gi|254781114|r   78 KRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKFDALRKKPKKDSYLCTLPGNFDIHQP-------RILSP  150 (263)
Q Consensus        78 ~~~~~~~~~~~lIlEDD~~~~~~f~~~l~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~  150 (263)
                      +.+++ +.+.+||+=||+.+..++...++.......+..+.... .....  .......+.+..+...       ..+..
T Consensus        95 ~~fi~-~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~-V~dP~--~yGVve~d~~g~i~~i~EKP~~p~Sn~a  170 (291)
T d1mc3a_          95 ETFLN-GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQ-VMDPE--RFGVVEFDDNFRAISLEEKPKQPKSNWA  170 (291)
T ss_dssp             HHHHT-TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEE-CSCCS--SSBBCEEETTEEEEECCBSCSSCSCSEE
T ss_pred             HHHHC-CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-CCCCC--CCCCCEECCCCCEEEEEECCCCCCCCEE
T ss_conf             99808-99769998997334867799999998374882999998-79860--5887042167526688978889887858


Q ss_pred             CCEEEEECHHHHHHHHHHHCCCCC---HHHHHHHHHHHC-CCCEEEE
Q ss_conf             512356669999999996254578---046887999975-9817999
Q gi|254781114|r  151 RTTGYFIGKEAAIHLLNVRKNIYR---PIDMDMKHWWEH-NIPSLVT  193 (263)
Q Consensus       151 gt~aY~Is~~~AkkLl~~~~~~~~---pvD~~l~~~~~~-~l~~~~~  193 (263)
                      -++.|+++++.-+.+ +..+|-.+   .+-..+..+... ++.++.+
T Consensus       171 ~~GiY~f~~~v~~~~-~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~  216 (291)
T d1mc3a_         171 VTGLYFYDSKVVEYA-KQVKPSERGELEITSINQMYLEAGNLTVELL  216 (291)
T ss_dssp             EEEEEECCTHHHHHH-HSCCCCSSSSCCHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEEECHHHHHHH-HCCCCCCCCCEEEHHHHHHHHHCCCCEEEEE
T ss_conf             878999682899998-5499988994255379999998399359991


No 4  
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}
Probab=40.26  E-value=9  Score=15.18  Aligned_cols=86  Identities=13%  Similarity=-0.042  Sum_probs=47.7

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCHHCCCCCCCCCCHHHHH---HHHHHHHHHH
Q ss_conf             8868998089988999999999987799789996637352896774202000024678878878999---9999999999
Q gi|254781114|r    2 PIPVYVISLPFSHARREKFCHRAARIHLQFSFFDAIYGENNPICNRIFSHQKRQCQFKRLLSLPEIG---CYISHIHLWK   78 (263)
Q Consensus         2 ~~kiyvInL~~~~~Rr~~~~~~~~~~gi~~e~~~Avdg~~~~~~~~~~~~~~~~~~~~~~l~~geig---C~lSH~~~w~   78 (263)
                      .|||-||--... +---.+.+.+.+.|++++.++...+...|.....+|.-.   ..|-+.+.-+-.   -..--....+
T Consensus         3 ~mrvli~qh~~~-e~~G~~~~~l~~~g~~~~~~~~~~~~~~p~~l~~~d~ii---i~Ggp~~~~d~~~~~~~~~~~~~i~   78 (230)
T d1o1ya_           3 HVRVLAIRHVEI-EDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVV---LLGGYMGAYEEEKYPFLKYEFQLIE   78 (230)
T ss_dssp             CCEEEEECSSTT-SSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEE---ECCCSCCTTCTTTCTHHHHHHHHHH
T ss_pred             CEEEEEEECCCC-CCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCEEE---ECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             508999979999-893799999997899799997899876876643378899---8299765564100455578999999


Q ss_pred             HHHHCCCCEEEEE
Q ss_conf             9982799859997
Q gi|254781114|r   79 RIAYSPAIGAIIL   91 (263)
Q Consensus        79 ~~~~~~~~~~lIl   91 (263)
                      .+++.+.|..=|+
T Consensus        79 ~~~~~~~PilGIC   91 (230)
T d1o1ya_          79 EILKKEIPFLGIC   91 (230)
T ss_dssp             HHHHHTCCEEEET
T ss_pred             HHHHHCCEEEEEE
T ss_conf             9997311078760


No 5  
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=20.07  E-value=21  Score=13.09  Aligned_cols=181  Identities=9%  Similarity=-0.038  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHH--HCCHHCCCCCCCCC-C----HHHHHHHHHHHHHHHHHHH-
Q ss_conf             988999999999987799-7899966373528967742--02000024678878-8----7899999999999999982-
Q gi|254781114|r   12 FSHARREKFCHRAARIHL-QFSFFDAIYGENNPICNRI--FSHQKRQCQFKRLL-S----LPEIGCYISHIHLWKRIAY-   82 (263)
Q Consensus        12 ~~~~Rr~~~~~~~~~~gi-~~e~~~Avdg~~~~~~~~~--~~~~~~~~~~~~~l-~----~geigC~lSH~~~w~~~~~-   82 (263)
                      +..+..+...+.+.++.. ++|.+=--||......+..  +......+.+.... .    ..-.|.+    .++...++ 
T Consensus        11 N~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~----~a~N~gi~~   86 (255)
T d1qg8a_          11 NKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYA----ALINQAIEM   86 (255)
T ss_dssp             SCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHH----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHC----CCCCCCCCC
T ss_conf             9889999999999828899859999989897318999999643012221111234543223210000----122222234


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHH-HHHHHCCCCCCEEEEEC--CC--CCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEE
Q ss_conf             79985999730221330089999-99984155377544511--36--654222112346777058994057985123566
Q gi|254781114|r   83 SPAIGAIILEDDADFSDEFSQLL-PHLSKCDINNILIKFDA--LR--KKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFI  157 (263)
Q Consensus        83 ~~~~~~lIlEDD~~~~~~f~~~l-~~~~~~~~~~d~~~l~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~~gt~aY~I  157 (263)
                      ...++++++.+|..+.+++.+.+ +.+... .+.+++.-..  ..  ................  ........+..+.++
T Consensus        87 a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  163 (255)
T d1qg8a_          87 AEGEYITYATDDNIYMPDRLLKMVRELDTH-PEKAVIYSASKTYHLNENRDIVKETVRPAAQV--TWNAPCAIDHCSVMH  163 (255)
T ss_dssp             CCCSEEEEEETTEEECTTHHHHHHHHHHHC-TTCCEEEEEEEEEEEC---CEEEEEEECCCSC--BSCCTTTSCGGGEEE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCEEEECCEEEEECCCCCEEEEECCCCHHH--HHHHCCCCCCHHHHH
T ss_conf             566634333665320025588999999849-87776863103533078874765303640456--664212345306788


Q ss_pred             CHHHHHHHHHHHCCCC-------CHHHHHHHHHHHCCCCEEEEECCCEE
Q ss_conf             6999999999625457-------80468879999759817999603131
Q gi|254781114|r  158 GKEAAIHLLNVRKNIY-------RPIDMDMKHWWEHNIPSLVTEPGAVY  199 (263)
Q Consensus       158 s~~~AkkLl~~~~~~~-------~pvD~~l~~~~~~~l~~~~~~P~~v~  199 (263)
                      .++..+++......+.       .--|..+..-...+.+.+.+...++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl~~~~~~~~i~~~l~~  212 (255)
T d1qg8a_         164 RYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFYPFYPLDEELDL  212 (255)
T ss_dssp             ETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTCCBEEEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHCCCCEEEECCCEEE
T ss_conf             9999999877617876455012010059999999837989995687899


No 6  
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.53  E-value=21  Score=13.02  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             CCCCEEEEECCCCHH---HHHHHHHHHHHCCCCEEEEEC
Q ss_conf             988689980899889---999999999877997899966
Q gi|254781114|r    1 MPIPVYVISLPFSHA---RREKFCHRAARIHLQFSFFDA   36 (263)
Q Consensus         1 m~~kiyvInL~~~~~---Rr~~~~~~~~~~gi~~e~~~A   36 (263)
                      +.++||+=++-.+.+   +..++.+-|+..|++|+-++-
T Consensus         2 ~~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi   40 (93)
T d1t1va_           2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDI   40 (93)
T ss_dssp             CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             977999815767711499999999999987996499971


No 7  
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=14.05  E-value=29  Score=12.22  Aligned_cols=59  Identities=10%  Similarity=0.084  Sum_probs=40.4

Q ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             86899808-99889999999999877997899966373528967742020000246788788789999999999999998
Q gi|254781114|r    3 IPVYVISL-PFSHARREKFCHRAARIHLQFSFFDAIYGENNPICNRIFSHQKRQCQFKRLLSLPEIGCYISHIHLWKRIA   81 (263)
Q Consensus         3 ~kiyvInL-~~~~~Rr~~~~~~~~~~gi~~e~~~Avdg~~~~~~~~~~~~~~~~~~~~~~l~~geigC~lSH~~~w~~~~   81 (263)
                      -.|||+++ +...++...+...+.+.|+..+.-.    ...+.                    +         .-++.+-
T Consensus         4 ~~V~i~~~g~~~~~~~~~l~~~Lr~~gi~v~~d~----~~~~l--------------------~---------kq~~~A~   50 (97)
T d1wu7a1           4 KSVYICRVGKINSSIMNEYSRKLRERGMNVTVEI----MERGL--------------------S---------AQLKYAS   50 (97)
T ss_dssp             CEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECC----SCCCH--------------------H---------HHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEC----CCCCH--------------------H---------HHHHHHH
T ss_conf             6399999087999999999999998899899987----88827--------------------8---------9999997


Q ss_pred             HCCCCEEEEEEEC
Q ss_conf             2799859997302
Q gi|254781114|r   82 YSPAIGAIILEDD   94 (263)
Q Consensus        82 ~~~~~~~lIlEDD   94 (263)
                      ..+.++++|+-+|
T Consensus        51 ~~~~~~~iiiG~~   63 (97)
T d1wu7a1          51 AIGADFAVIFGER   63 (97)
T ss_dssp             HTTCSEEEEEEHH
T ss_pred             HCCCCEEEECCCC
T ss_conf             4179758841773


No 8  
>d2i15a1 a.291.1.1 (A:1-129) Hypothetical protein MPN423 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=10.72  E-value=22  Score=12.89  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
Q ss_conf             99999999999827998599973022133008
Q gi|254781114|r   70 YISHIHLWKRIAYSPAIGAIILEDDADFSDEF  101 (263)
Q Consensus        70 ~lSH~~~w~~~~~~~~~~~lIlEDD~~~~~~f  101 (263)
                      +-...+-+.+|++......+|.|||-.-...|
T Consensus        21 fetfrqnfnrclereqstlliyedddyddqsf   52 (129)
T d2i15a1          21 FETFRQNFNRCLEREQSTLLIYEDDDYDDQSF   52 (129)
T ss_dssp             HHHHHHHHHHHHHHHTSCSCTTTSSCCCSCHH
T ss_pred             HHHHHHHHHHHHHHHHCEEEEECCCCCCCHHH
T ss_conf             99999889999875443378851688540667


No 9  
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=8.94  E-value=44  Score=11.21  Aligned_cols=35  Identities=11%  Similarity=-0.014  Sum_probs=27.4

Q ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             99808998899999999998779978999663735
Q gi|254781114|r    6 YVISLPFSHARREKFCHRAARIHLQFSFFDAIYGE   40 (263)
Q Consensus         6 yvInL~~~~~Rr~~~~~~~~~~gi~~e~~~Avdg~   40 (263)
                      ..|-+++.+-....+.+.|.+.|++.+.+.+.+..
T Consensus         2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~   36 (71)
T d2f06a1           2 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANN   36 (71)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEET
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             89995698248999999998789878999988479


No 10 
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}
Probab=8.57  E-value=45  Score=11.12  Aligned_cols=19  Identities=16%  Similarity=0.260  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCEEEEEC
Q ss_conf             9999999877997899966
Q gi|254781114|r   18 EKFCHRAARIHLQFSFFDA   36 (263)
Q Consensus        18 ~~~~~~~~~~gi~~e~~~A   36 (263)
                      +.+..+|+++|+.||++++
T Consensus        22 ~~i~~~L~~~gv~~e~W~~   40 (179)
T d1zrra1          22 EEIQQQLNAKGVRFERWQA   40 (179)
T ss_dssp             HHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHCCEEEEECCC
T ss_conf             9999999977837776468


Done!