RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781114|ref|YP_003065527.1| glycosyl transferase family
protein [Candidatus Liberibacter asiaticus str. psy62]
(263 letters)
>gnl|CDD|110732 pfam01755, Glyco_transf_25, Glycosyltransferase family 25 (LPS
biosynthesis protein). Members of this family belong to
Glycosyltransferase family 25 This is a family of
glycosyltransferases involved in lipopolysaccharide
(LPS) biosynthesis. These enzymes catalyse the transfer
of various sugars onto the growing LPS chain during its
biosynthesis.
Length = 200
Score = 99.8 bits (249), Expect = 6e-22
Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 23/200 (11%)
Query: 3 IPVYVISLPFSHARREKFCHRAARIHLQFSFFDAIYG---ENNPICNRIFSHQKRQCQFK 59
I +YVISL + RRE ++++ F FFDAI G N+ + + + +
Sbjct: 2 IKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFKLYNFLLRSKYAGR 61
Query: 60 RLLSLPEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIK 119
L+L EIGC++SH LW++ IILEDD S+ F +L L K ++
Sbjct: 62 P-LTLGEIGCFLSHYSLWQKCVELNLEYIIILEDDVILSENFKAILQFLLKEINELEFLR 120
Query: 120 FDALRKKPKKDS-----YLCTLP--------GNFDIHQPRILSP------RTTGYFIGKE 160
K + L T + R T GY I +
Sbjct: 121 LGEWLKTRFDPNDKFIVRLETFLMDSKKFKRTPIADYGNRAFYLLKSGHAGTAGYLITPK 180
Query: 161 AAIHLLNVRKNIYRPIDMDM 180
AA LL KN P+D M
Sbjct: 181 AAKKLLKYSKNWPLPVDDLM 200
>gnl|CDD|133474 cd06532, Glyco_transf_25, Glycosyltransferase family 25
[lipooligosaccharide (LOS) biosynthesis protein] is a
family of glycosyltransferases involved in LOS
biosynthesis. The members include the beta(1,4)
galactosyltransferases: Lgt2 of Moraxella catarrhalis,
LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of
Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes
the addition of galactose (Gal) to the growing chain of
LOS on the cell surface. N. gonorrhoeae LgtB and LgtE
link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and
Glc (glucose), respectively. The genes encoding LgtB and
LgtE are two genes of a five gene locus involved in the
synthesis of gonococcal LOS. LgtE is believed to perform
the first step in LOS biosynthesis.
Length = 128
Score = 95.4 bits (238), Expect = 1e-20
Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 51/178 (28%)
Query: 4 PVYVISLPFSHARREKFCHRAARIHLQFSFFDAIYGENNPICNRI-FSHQKRQCQFKRLL 62
++VI+L S RRE+ + A + L F FFDA+ G++ ++ R L
Sbjct: 1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPL 60
Query: 63 SLPEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKFDA 122
+ EIGC++SH LW++I S A+ILEDDA +
Sbjct: 61 TPGEIGCFLSHYKLWQKIVESNLEYALILEDDAILDPD---------------------- 98
Query: 123 LRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFIGKEAAIHLLNVRKNIYRPIDMDM 180
T GY + ++ A LL + I P+D+ +
Sbjct: 99 ----------------------------GTAGYLVSRKGAKKLLAALEPIDLPVDVFL 128
>gnl|CDD|33115 COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis
[Cell envelope biogenesis, outer membrane].
Length = 255
Score = 78.9 bits (194), Expect = 1e-15
Identities = 60/240 (25%), Positives = 96/240 (40%), Gaps = 16/240 (6%)
Query: 1 MPIPVYVISLPFSHARREKFCHRAARI-HLQFSFFDAIYGENNPICNRIFSHQKRQCQFK 59
+P++VISL S R E + L F FDA+ G++ + I ++
Sbjct: 1 SLMPIHVISLKSSQERLEHVAETFEALGGLPFQRFDAVNGKSEDEKDLIAELDAGHLLYE 60
Query: 60 -RLLSLPEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLP----HLSKCDIN 114
R LS EIGCY+SH+ LWK+ +ILEDD ++F + L + +
Sbjct: 61 GRRLSPGEIGCYLSHLKLWKKALEENLPYILILEDDVVLGEDFEEFLEDDLKLPVRFLGD 120
Query: 115 NILIKFDALRKKPKKDSYLCTLPG-NFDIHQPRILSPRTTGYFIGKEAAIHLLNV--RKN 171
+I I P ++ G NF + L T GY I ++AA L +
Sbjct: 121 DIDIHRLETFLSPNPLAFNAVFIGRNFPLLNSYHLG--TAGYIISRKAAKKFLELTESFK 178
Query: 172 IYRPIDMDMKHWWEHNIPSLVTEP----GAVYEAIDTNDSTIEESRLVRKPTFSPLYFYR 227
+ P+D M + H + + V +P A A+ + + + RK L
Sbjct: 179 VVLPVDWFMFLEFLHGVGNKVYQPFPAICAQGSALSSILENERDGKSRRKKLV-KLLLSH 237
>gnl|CDD|39381 KOG4179, KOG4179, KOG4179, Lysyl hydrolase/glycosyltransferase
family 25 [Posttranslational modification, protein
turnover, chaperones].
Length = 568
Score = 40.4 bits (94), Expect = 6e-04
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Query: 5 VYVISLPFSHARREKFCHRAARIHLQFSFFDAIYGEN-NPICNRIFSHQ----KRQCQFK 59
+++I+L RRE+ + +++S +A+ G+ N Q R
Sbjct: 294 IFMINLKRRPERRERMLRIFDELGIEYSLVEAVDGKKLNTSQLEALGVQMLPGYRDPYSG 353
Query: 60 RLLSLPEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQ----LLPHLSKCDINN 115
R L+ EIGC++SH ++WK + ++ EDD F +F L+ + ++
Sbjct: 354 RPLTKGEIGCFLSHYNIWKEVVDRGLEKVLVFEDDLRFEHDFRTRLMRLMQDVDAEHLDW 413
Query: 116 ILIKFDALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFIGKEAAIHLL 166
LI R + +++ + + + S T GY I + A LL
Sbjct: 414 DLIYLGRKRMQEEEEKAVENVRNLVEAG----YSYWTLGYVISLQGARKLL 460
>gnl|CDD|145066 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic
domain. This is a family of vitamin-B12 independent
methionine synthases or
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferases, EC:2.1.1.14 from bacteria and
plants. Plants are the only higher eukaryotes that have
the required enzymes for methionine synthesis. This
enzyme catalyses the last step in the production of
methionine by transferring a methyl group from
5-methyltetrahydrofolate to homocysteine. The aligned
region makes up the carboxy region of the approximately
750 amino acid protein except in some hypothetical
archaeal proteins present in the family, where this
region corresponds to the entire length. This domain
contains the catalytic residues of the enzyme.
Length = 324
Score = 28.5 bits (64), Expect = 1.9
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 18/79 (22%)
Query: 85 AIGAIILEDDADFS-----DEFSQLLPHLSKCDINNILIKF--------DALRKKPKKDS 131
+ I+ D +F+ +L + D++ + I+F +AL +
Sbjct: 201 RLDTIVAALDTQVHTHVCYSDFNDILDAIDALDVDVLTIEFARSDMENLEALEEWG---- 256
Query: 132 YLCTL-PGNFDIHQPRILS 149
Y + G DIH PR+ S
Sbjct: 257 YGKGVGFGVVDIHSPRVPS 275
>gnl|CDD|37918 KOG2707, KOG2707, KOG2707, Predicted metalloprotease with chaperone
activity (RNAse H/HSP70 fold) [Posttranslational
modification, protein turnover, chaperones].
Length = 405
Score = 28.4 bits (63), Expect = 2.1
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 73 HIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIK---FDALRKKPK 128
H + AI + AD +F L ++ KC+ + +K + K K
Sbjct: 207 LGHPEDARSGGKAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEK 265
>gnl|CDD|145351 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 28.4 bits (64), Expect = 2.3
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 212 SRLVRKPTFSPLYFYRNTCYQWNLHYNAWRKDLPPVSTTKFLPSSSSSLIK 262
++L ++ SP F+ N W+ YN ++L P + P+ + I
Sbjct: 21 AKLAKEELASPEAFFSNPYLVWDPFYN-IARELLP---GQAQPNPAHYFIA 67
>gnl|CDD|38470 KOG3260, KOG3260, KOG3260, Calcyclin-binding protein CacyBP [Signal
transduction mechanisms].
Length = 224
Score = 27.7 bits (61), Expect = 3.0
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 110 KCDINNIL--IKFDALRKKPKKDSYLCTLP------GNF-DIHQPRILSPRTTGYFIGKE 160
+ +NN+L I + KK K D+ L ++ + +
Sbjct: 122 RMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENTRWDYLTQVEKECKEKEKPSLDKETD 181
Query: 161 AAIHLLNVRKNIYRPIDMDMK 181
+ L+NV K IY D DMK
Sbjct: 182 PSEGLMNVMKKIYEDGDDDMK 202
>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14.
Length = 122
Score = 27.2 bits (61), Expect = 5.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 40 ENNPICNRIF---SHQKRQCQFKRLLSL-PEI 67
E NP R+F + + R+ F +++SL PE+
Sbjct: 90 EGNPKGTRVFGPIARELREKNFTKIVSLAPEV 121
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.324 0.139 0.447
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,551,480
Number of extensions: 190969
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 13
Length of query: 263
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,275,709
Effective search space: 731146239
Effective search space used: 731146239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)