RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781114|ref|YP_003065527.1| glycosyl transferase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)



>gnl|CDD|185215 PRK15315, PRK15315, outer membrane protein RatA; Provisional.
          Length = 1865

 Score = 27.7 bits (61), Expect = 3.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 177  DMDMKHWWEHNIPSLVTEPGAVYE 200
            D+ +   W H  PSL    GAVY+
Sbjct: 1142 DVSVARMWGHMAPSLTAADGAVYQ 1165


>gnl|CDD|167273 PRK01759, glnD, PII uridylyl-transferase; Provisional.
          Length = 854

 Score = 27.0 bits (60), Expect = 5.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 32  SFFDAIYGENNPICNRIFSHQKRQCQFKRLLSL 64
           SF D    E +PIC++IFS    Q   + LL +
Sbjct: 450 SFLDEESAEQHPICHQIFS----QLSDRTLLYI 478


>gnl|CDD|183741 PRK12780, fliR, flagellar biosynthesis protein FliR; Reviewed.
          Length = 251

 Score = 26.6 bits (59), Expect = 6.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query: 3   IPVYVISLPF 12
           IPVY IS PF
Sbjct: 211 IPVYFISTPF 220


>gnl|CDD|183971 PRK13317, PRK13317, pantothenate kinase; Provisional.
          Length = 277

 Score = 26.5 bits (59), Expect = 6.5
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 14/53 (26%)

Query: 41  NNPICNRIFSHQKRQCQFKRLLSLPEIGCYISHIHLWKRIAYSPAIGAIILED 93
           NNP+   I     +           E G             YS AIGA++L  
Sbjct: 235 NNPLLQEIIESYTKLRNCT--PIFLENG------------GYSGAIGALLLAT 273


>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 26.7 bits (59), Expect = 6.6
 Identities = 21/72 (29%), Positives = 32/72 (44%)

Query: 58  FKRLLSLPEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNIL 117
           F RLL L E       + L+ R  YSP +  I +  +     ++    PHL+  D   I 
Sbjct: 50  FNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIG 109

Query: 118 IKFDALRKKPKK 129
           +K + L K  K+
Sbjct: 110 VKLNGLVKSKKE 121


>gnl|CDD|184793 PRK14696, tynA, tyramine oxidase; Provisional.
          Length = 721

 Score = 26.3 bits (58), Expect = 8.9
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 147 ILSPRTTGYFIGKEAAIHLLNVRKNIYRPIDMDMKHWWEHNIPSLVTEPGAVYEAIDTND 206
           I +P T GYF GK+       + K +   +D+   ++W H I +LV    AV +      
Sbjct: 215 ITTPLTVGYFDGKDGLKQDARLLK-VVSYLDVGDGNYWAHPIENLV----AVVDLEQKKI 269

Query: 207 STIEESRLVRKP 218
             IEE  +V  P
Sbjct: 270 IKIEEGPVVPVP 281


>gnl|CDD|162011 TIGR00726, TIGR00726, uncharacterized protein, YfiH family.
           PSI-BLAST converges on members of this family of
           uncharacterized bacterial proteins and shows no
           significant similarity to any characterized protein. No
           completed genome to date has two members. Members of the
           family have been crystallized but the function is
           unknown.
          Length = 221

 Score = 26.2 bits (58), Expect = 9.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 79  RIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKFD 121
                PAIG    E D +  + F  +LP+ S   I +    FD
Sbjct: 129 IAVIGPAIGGCCYEVDKEVYEAFRAVLPNASLPFIPDGKYLFD 171


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,508,735
Number of extensions: 285760
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 13
Length of query: 263
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,006,537
Effective search space: 685117827
Effective search space used: 685117827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)