BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781114|ref|YP_003065527.1| glycosyl transferase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781114|ref|YP_003065527.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 263

 Score =  546 bits (1408), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MPIPVYVISLPFSHARREKFCHRAARIHLQFSFFDAIYGENNPICNRIFSHQKRQCQFKR 60
           MPIPVYVISLPFSHARREKFCHRAARIHLQFSFFDAIYGENNPICNRIFSHQKRQCQFKR
Sbjct: 1   MPIPVYVISLPFSHARREKFCHRAARIHLQFSFFDAIYGENNPICNRIFSHQKRQCQFKR 60

Query: 61  LLSLPEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKF 120
           LLSLPEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKF
Sbjct: 61  LLSLPEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKF 120

Query: 121 DALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFIGKEAAIHLLNVRKNIYRPIDMDM 180
           DALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFIGKEAAIHLLNVRKNIYRPIDMDM
Sbjct: 121 DALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFIGKEAAIHLLNVRKNIYRPIDMDM 180

Query: 181 KHWWEHNIPSLVTEPGAVYEAIDTNDSTIEESRLVRKPTFSPLYFYRNTCYQWNLHYNAW 240
           KHWWEHNIPSLVTEPGAVYEAIDTNDSTIEESRLVRKPTFSPLYFYRNTCYQWNLHYNAW
Sbjct: 181 KHWWEHNIPSLVTEPGAVYEAIDTNDSTIEESRLVRKPTFSPLYFYRNTCYQWNLHYNAW 240

Query: 241 RKDLPPVSTTKFLPSSSSSLIKS 263
           RKDLPPVSTTKFLPSSSSSLIKS
Sbjct: 241 RKDLPPVSTTKFLPSSSSSLIKS 263


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1246

 Score = 26.6 bits (57), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 117  LIKFDALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYF 156
            ++  + LR KPK   +   +P +  ++   I+  +T GYF
Sbjct: 1186 IVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYF 1225


>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 947

 Score = 24.6 bits (52), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 15/56 (26%)

Query: 183 WWEHNIPSLV----------TEPGAVYEAID-----TNDSTIEESRLVRKPTFSPL 223
           WW H IP             TE  A+  AID      ND T++  ++++    S L
Sbjct: 448 WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDL 503


>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 461

 Score = 24.3 bits (51), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 218 PTFSPLYFYRNTCYQWNLHYNAWRK 242
           P F P++F   T   +  HY  WR 
Sbjct: 356 PGFIPMFFSNATIGIFANHYGGWRA 380


>gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 299

 Score = 23.5 bits (49), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 165 LLNVRKNIYRPIDMDMK-HWWEHNIPSLVTEPGAVYEAIDTNDSTIEESRLVRKPTFSPL 223
           L+ VR     PI  DM+  WW+    S  +  G + E+I  +  ++E   +VR+      
Sbjct: 60  LMRVRDTARNPITRDMRLQWWKDIFES--STKGLIAESI--SPFSVELLSIVRQYDLPNQ 115

Query: 224 YF 225
           YF
Sbjct: 116 YF 117


>gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 289

 Score = 23.5 bits (49), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 157 IGKEAAIHLLNVRKNIYRPIDMDMKHWWEHNIP 189
           + +E   H+ N++  I +    ++KHW++  IP
Sbjct: 172 LTQETEKHINNLQDKILQDRAKEIKHWYDTLIP 204


>gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 438

 Score = 22.7 bits (47), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 23  RAARIHLQFSFFDAIYGENNPICNRIFSH 51
           R  + ++++   + +YG  N  CN I SH
Sbjct: 142 RILKNYVEYDEINRVYGIINGTCNYILSH 170


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.139    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,446
Number of Sequences: 1233
Number of extensions: 7750
Number of successful extensions: 27
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 7
length of query: 263
length of database: 328,796
effective HSP length: 72
effective length of query: 191
effective length of database: 240,020
effective search space: 45843820
effective search space used: 45843820
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)