HHsearch alignment for GI: 254781115 and conserved domain: PRK03059
>PRK03059 PII uridylyl-transferase; Provisional.
Probab=98.94 E-value=2.2e-09 Score=82.37 Aligned_cols=190 Identities=15% Similarity=0.121 Sum_probs=130.0
Q ss_pred HHHCCCCCEEEEEEEEECCCC-CCCCCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCC-HHHHHHHHHHCCCCCCC
Q ss_conf 001042100332012201364-331111000123333210222--05776887886421101-89999987530023346
Q gi|254781115|r 159 RILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKIL--SSERIWSEINKLLEAKN-PLNAIVHMYNGGIFKEI 234 (416)
Q Consensus 159 rf~EDpLRiLRa~RFasrlg~-f~id~~t~~ai~~~~~~L~~i--S~ERI~~El~KiL~~~~-~~~~l~~L~~~gll~~i 234 (416)
T Consensus 342 ~f~~~P~~ll~~F~~~~~~~~~~gi~~~tlr~i~~~~~~i~~~~r~~~~~~~~F~~iL~~~~~~~~~l~~M~~~GvL~~~ 421 (857)
T PRK03059 342 LFERHPHAILEAFLLYQQTPGLKGLSARTLRALYNARDVMDAAFRRDPVNRALFMQILQQPRGITHALRLMNQTSVLGRY 421 (857)
T ss_pred CHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 00019899999999998477745789779999999877379666328788999999973898589999999874862753
Q ss_pred CCCCCCCCH------------HH--------HHHHHHHH---------HHC-CCCCCHHHHHHHHCCCCCH---------
Q ss_conf 887010585------------78--------98778677---------631-7880167666520477685---------
Q gi|254781115|r 235 FLDVQEISL------------DQ--------LSQVIEAE---------QVF-EWKIDSLLRFIVLISWQDK--------- 275 (416)
Q Consensus 235 fpel~~~~~------------~~--------l~~~~~~~---------~~~-~~~~~~~lrla~Ll~~~~~--------- 275 (416)
T Consensus 422 iPef~~I~g~mQfD~yH~YTVDeHtl~~v~~l~~~~~~~~~~e~p~~~~l~~~~~~p~lL~LA~L~HDIgKGrggDHS~~ 501 (857)
T PRK03059 422 LPNFRRIVGQMQHDLFHVYTVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIAGFDRPWLLYVAALFHDIAKGRGGDHSEL 501 (857)
T ss_pred CCCHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 66578671663455024160637899999999997432100004057899854798469999999988517888973777
Q ss_pred --HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf --78998875303425677778888754114333-------672466789987080245516989998640777601389
Q gi|254781115|r 276 --KSILSMAKKFSLPREIRYFLISFFNCNFNQKT-------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346 (416)
Q Consensus 276 --~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (416)
T Consensus 502 GA~~a~~~~~r~gl~~~d~~lv~wLV~~HLlMS~tAqrrDi~Dp~vI~~FA~~Vg~~erL~~LylLTvADi~Atgp~~WN 581 (857)
T PRK03059 502 GAADARRFCRQHGIAREDAELVVWLVEHHLTMSQVAQKQDLSDPEVIAAFAELVGDERRLTALYLLTVADIRGTSPKVWN 581 (857)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 69999999998599989999999999846288889852799985999999987399999999887889887434800335
Q ss_pred HH
Q ss_conf 99
Q gi|254781115|r 347 FI 348 (416)
Q Consensus 347 ~~ 348 (416)
T Consensus 582 ~W 583 (857)
T PRK03059 582 AW 583 (857)
T ss_pred HH
T ss_conf 78