HHsearch alignment for GI: 254781115 and conserved domain: PRK03059

>PRK03059 PII uridylyl-transferase; Provisional.
Probab=98.94  E-value=2.2e-09  Score=82.37  Aligned_cols=190  Identities=15%  Similarity=0.121  Sum_probs=130.0

Q ss_pred             HHHCCCCCEEEEEEEEECCCC-CCCCCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCC-HHHHHHHHHHCCCCCCC
Q ss_conf             001042100332012201364-331111000123333210222--05776887886421101-89999987530023346
Q gi|254781115|r  159 RILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKIL--SSERIWSEINKLLEAKN-PLNAIVHMYNGGIFKEI  234 (416)
Q Consensus       159 rf~EDpLRiLRa~RFasrlg~-f~id~~t~~ai~~~~~~L~~i--S~ERI~~El~KiL~~~~-~~~~l~~L~~~gll~~i  234 (416)
T Consensus       342 ~f~~~P~~ll~~F~~~~~~~~~~gi~~~tlr~i~~~~~~i~~~~r~~~~~~~~F~~iL~~~~~~~~~l~~M~~~GvL~~~  421 (857)
T PRK03059        342 LFERHPHAILEAFLLYQQTPGLKGLSARTLRALYNARDVMDAAFRRDPVNRALFMQILQQPRGITHALRLMNQTSVLGRY  421 (857)
T ss_pred             CHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH
T ss_conf             00019899999999998477745789779999999877379666328788999999973898589999999874862753


Q ss_pred             CCCCCCCCH------------HH--------HHHHHHHH---------HHC-CCCCCHHHHHHHHCCCCCH---------
Q ss_conf             887010585------------78--------98778677---------631-7880167666520477685---------
Q gi|254781115|r  235 FLDVQEISL------------DQ--------LSQVIEAE---------QVF-EWKIDSLLRFIVLISWQDK---------  275 (416)
Q Consensus       235 fpel~~~~~------------~~--------l~~~~~~~---------~~~-~~~~~~~lrla~Ll~~~~~---------  275 (416)
T Consensus       422 iPef~~I~g~mQfD~yH~YTVDeHtl~~v~~l~~~~~~~~~~e~p~~~~l~~~~~~p~lL~LA~L~HDIgKGrggDHS~~  501 (857)
T PRK03059        422 LPNFRRIVGQMQHDLFHVYTVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIAGFDRPWLLYVAALFHDIAKGRGGDHSEL  501 (857)
T ss_pred             CCCHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             66578671663455024160637899999999997432100004057899854798469999999988517888973777


Q ss_pred             --HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             --78998875303425677778888754114333-------672466789987080245516989998640777601389
Q gi|254781115|r  276 --KSILSMAKKFSLPREIRYFLISFFNCNFNQKT-------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC  346 (416)
Q Consensus       276 --~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  346 (416)
T Consensus       502 GA~~a~~~~~r~gl~~~d~~lv~wLV~~HLlMS~tAqrrDi~Dp~vI~~FA~~Vg~~erL~~LylLTvADi~Atgp~~WN  581 (857)
T PRK03059        502 GAADARRFCRQHGIAREDAELVVWLVEHHLTMSQVAQKQDLSDPEVIAAFAELVGDERRLTALYLLTVADIRGTSPKVWN  581 (857)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             69999999998599989999999999846288889852799985999999987399999999887889887434800335


Q ss_pred             HH
Q ss_conf             99
Q gi|254781115|r  347 FI  348 (416)
Q Consensus       347 ~~  348 (416)
T Consensus       582 ~W  583 (857)
T PRK03059        582 AW  583 (857)
T ss_pred             HH
T ss_conf             78