HHsearch alignment for GI: 254781115 and conserved domain: PRK05007

>PRK05007 PII uridylyl-transferase; Provisional.
Probab=98.97  E-value=4e-09  Score=80.60  Aligned_cols=190  Identities=14%  Similarity=0.086  Sum_probs=130.4

Q ss_pred             HHHCCCCCEEEEEEEEECCCCC-CCCCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCH-HHHHHHHHHCCCCCCC
Q ss_conf             0010421003320122013643-3111100012333321022--2057768878864211018-9999987530023346
Q gi|254781115|r  159 RILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNP-LNAIVHMYNGGIFKEI  234 (416)
Q Consensus       159 rf~EDpLRiLRa~RFasrlg~f-~id~~t~~ai~~~~~~L~~--iS~ERI~~El~KiL~~~~~-~~~l~~L~~~gll~~i  234 (416)
T Consensus       359 ~f~~~P~~il~lF~~~a~~~~i~gi~~~tlr~lr~~~~~i~~~~~~~p~~r~~F~~iL~~p~~~~~~L~~M~~~GvL~~y  438 (881)
T PRK05007        359 LFQRQPEAILRMFLLMARNSNITGIYSTTLRQLRHARRHLNQPLCEIPEARKLFMEILRHPGAVSRALSPMHRHSVLSAY  438 (881)
T ss_pred             HHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
T ss_conf             54319899999999998567755679799999999877457031059799999999981888579999999872889886


Q ss_pred             CCCCCCCCH------------H--------HHHHHHHHH---------HHC-CCCCCHHHHHHHHCCCCCH---------
Q ss_conf             887010585------------7--------898778677---------631-7880167666520477685---------
Q gi|254781115|r  235 FLDVQEISL------------D--------QLSQVIEAE---------QVF-EWKIDSLLRFIVLISWQDK---------  275 (416)
Q Consensus       235 fpel~~~~~------------~--------~l~~~~~~~---------~~~-~~~~~~~lrla~Ll~~~~~---------  275 (416)
T Consensus       439 lPef~~I~g~mQfDlfH~YTVDeHTl~~i~~l~~~~~~~~~~~~pl~~~l~~~l~~~~lLylA~LfHDIgKGrggDHS~l  518 (881)
T PRK05007        439 LPQWSHIVGQMQFDLFHAYTVDEHTIRVLLKIESFAQEETRQRHPLCVELYPRLPKKELLLLAALFHDIAKGRGGDHSKL  518 (881)
T ss_pred             CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             62477750663557762354008899999999998463223225268999872576778999999876126889984652


Q ss_pred             --HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             --78998875303425677778888754114333-------672466789987080245516989998640777601389
Q gi|254781115|r  276 --KSILSMAKKFSLPREIRYFLISFFNCNFNQKT-------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC  346 (416)
Q Consensus       276 --~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  346 (416)
T Consensus       519 GA~~a~~f~~r~gl~~~d~~lv~wLV~~HLlMS~tAqRRDI~DP~vI~~FA~~V~~~erL~~LylLTvADi~AT~p~~WN  598 (881)
T PRK05007        519 GAQDALDFCELHGLNSRETQLVAWLVRNHLLMSVTAQRRDIQDPDVIKQFAEEVRDEVRLRYLVCLTVADICATNETLWN  598 (881)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             18999999998599988999999999999988899986489988999999870496888999999999998624911000


Q ss_pred             HH
Q ss_conf             99
Q gi|254781115|r  347 FI  348 (416)
Q Consensus       347 ~~  348 (416)
T Consensus       599 ~W  600 (881)
T PRK05007        599 SW  600 (881)
T ss_pred             HH
T ss_conf             77