HHsearch alignment for GI: 254781115 and conserved domain: PRK05007
>PRK05007 PII uridylyl-transferase; Provisional.
Probab=98.97 E-value=4e-09 Score=80.60 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=130.4
Q ss_pred HHHCCCCCEEEEEEEEECCCCC-CCCCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCH-HHHHHHHHHCCCCCCC
Q ss_conf 0010421003320122013643-3111100012333321022--2057768878864211018-9999987530023346
Q gi|254781115|r 159 RILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNP-LNAIVHMYNGGIFKEI 234 (416)
Q Consensus 159 rf~EDpLRiLRa~RFasrlg~f-~id~~t~~ai~~~~~~L~~--iS~ERI~~El~KiL~~~~~-~~~l~~L~~~gll~~i 234 (416)
T Consensus 359 ~f~~~P~~il~lF~~~a~~~~i~gi~~~tlr~lr~~~~~i~~~~~~~p~~r~~F~~iL~~p~~~~~~L~~M~~~GvL~~y 438 (881)
T PRK05007 359 LFQRQPEAILRMFLLMARNSNITGIYSTTLRQLRHARRHLNQPLCEIPEARKLFMEILRHPGAVSRALSPMHRHSVLSAY 438 (881)
T ss_pred HHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
T ss_conf 54319899999999998567755679799999999877457031059799999999981888579999999872889886
Q ss_pred CCCCCCCCH------------H--------HHHHHHHHH---------HHC-CCCCCHHHHHHHHCCCCCH---------
Q ss_conf 887010585------------7--------898778677---------631-7880167666520477685---------
Q gi|254781115|r 235 FLDVQEISL------------D--------QLSQVIEAE---------QVF-EWKIDSLLRFIVLISWQDK--------- 275 (416)
Q Consensus 235 fpel~~~~~------------~--------~l~~~~~~~---------~~~-~~~~~~~lrla~Ll~~~~~--------- 275 (416)
T Consensus 439 lPef~~I~g~mQfDlfH~YTVDeHTl~~i~~l~~~~~~~~~~~~pl~~~l~~~l~~~~lLylA~LfHDIgKGrggDHS~l 518 (881)
T PRK05007 439 LPQWSHIVGQMQFDLFHAYTVDEHTIRVLLKIESFAQEETRQRHPLCVELYPRLPKKELLLLAALFHDIAKGRGGDHSKL 518 (881)
T ss_pred CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 62477750663557762354008899999999998463223225268999872576778999999876126889984652
Q ss_pred --HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf --78998875303425677778888754114333-------672466789987080245516989998640777601389
Q gi|254781115|r 276 --KSILSMAKKFSLPREIRYFLISFFNCNFNQKT-------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346 (416)
Q Consensus 276 --~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (416)
T Consensus 519 GA~~a~~f~~r~gl~~~d~~lv~wLV~~HLlMS~tAqRRDI~DP~vI~~FA~~V~~~erL~~LylLTvADi~AT~p~~WN 598 (881)
T PRK05007 519 GAQDALDFCELHGLNSRETQLVAWLVRNHLLMSVTAQRRDIQDPDVIKQFAEEVRDEVRLRYLVCLTVADICATNETLWN 598 (881)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 18999999998599988999999999999988899986489988999999870496888999999999998624911000
Q ss_pred HH
Q ss_conf 99
Q gi|254781115|r 347 FI 348 (416)
Q Consensus 347 ~~ 348 (416)
T Consensus 599 ~W 600 (881)
T PRK05007 599 SW 600 (881)
T ss_pred HH
T ss_conf 77