HHsearch alignment for GI: 254781115 and conserved domain: PRK11623
>PRK11623 pcnB poly(A) polymerase I; Provisional.
Probab=100.00 E-value=0 Score=486.74 Aligned_cols=256 Identities=24% Similarity=0.413 Sum_probs=216.7
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEE
Q ss_conf 99889999999997898599970699888778898608999808989999999876995621343144699998998886
Q gi|254781115|r 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 (416)
Q Consensus 11 ~~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~d 90 (416)
T Consensus 51 is~~alkVl~~L~~aGfeAylVGG~VRDlLLg~~PkDfDvaT~AtPeei~~lF~~~r----~iGrrf~~vhV~~~~~~iE 126 (471)
T PRK11623 51 ISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCR----LVGRRFRLAHVMFGPEIIE 126 (471)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCC----CCCCCCCEEEEEECCEEEE
T ss_conf 797699999999967975999772898997598999864618998899999998530----3053774589998995899
Q ss_pred EECCCCCC-CCCC-----------CCC-CCCCCHHHHHHCCCCCCCCCCEEECC-CCHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 42134466-7688-----------743-22332013321044780030020003-2101320000688878777642764
Q gi|254781115|r 91 ITTLRSDL-ITDG-----------RYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 (416)
Q Consensus 91 i~~~R~e~-~~~~-----------~~~-~~~~~~~~~eDl~RRDFTINAla~~~-~~~l~Dp~gG~~DL~~~~ir~v~~~ 156 (416)
T Consensus 127 VtTFR~~~~~~~~~~~~~~~~~~g~~lrdn~~g-tieeDa~RRDFTINALyyd~~~~~i~D~~gG~~DL~~~~iR~IGdP 205 (471)
T PRK11623 127 VATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFG-SIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKEGVIRLIGNP 205 (471)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCC-CHHHHHHHCCCCCHHHEECCCCCEEECCCCCHHHHHCCCEECCCCH
T ss_conf 963357766666666654426776032034558-7888866327520221122799967689898999965955502798
Q ss_pred CCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 31001042100332012201364331111000123333210222057768878864211018999998753002334688
Q gi|254781115|r 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 (416)
Q Consensus 157 ~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifp 236 (416)
T Consensus 206 ~~Rf~EDpvRmLRAvRFaakL~-f~i~~~t~~~I~~~~~lL~~i~~aRLfdE~lKLf~sG~a~~~~~~L~~~gL~~~LfP 284 (471)
T PRK11623 206 ETRYREDPVRMLRAVRFAAKLD-MRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFP 284 (471)
T ss_pred HHHHHHCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 9997667899999999999719-976878999999999988548876789999999865858999999998687676515
Q ss_pred CCCCCC-------HHHH-H-HHHHHHHH--CCCCCCHHHHHHHHCCC
Q ss_conf 701058-------5789-8-77867763--17880167666520477
Q gi|254781115|r 237 DVQEIS-------LDQL-S-QVIEAEQV--FEWKIDSLLRFIVLISW 272 (416)
Q Consensus 237 el~~~~-------~~~l-~-~~~~~~~~--~~~~~~~~lrla~Ll~~ 272 (416)
T Consensus 285 ~~~~~l~~~~~~~~~~~i~~aL~nTD~RI~~gK~VtPaFLfAalLW~ 331 (471)
T PRK11623 285 TITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWY 331 (471)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 27877631267089999999999799998688977829999999718