HHsearch alignment for GI: 254781115 and conserved domain: PRK11623

>PRK11623 pcnB poly(A) polymerase I; Provisional.
Probab=100.00  E-value=0  Score=486.74  Aligned_cols=256  Identities=24%  Similarity=0.413  Sum_probs=216.7

Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEE
Q ss_conf             99889999999997898599970699888778898608999808989999999876995621343144699998998886
Q gi|254781115|r   11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD   90 (416)
Q Consensus        11 ~~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~d   90 (416)
T Consensus        51 is~~alkVl~~L~~aGfeAylVGG~VRDlLLg~~PkDfDvaT~AtPeei~~lF~~~r----~iGrrf~~vhV~~~~~~iE  126 (471)
T PRK11623         51 ISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCR----LVGRRFRLAHVMFGPEIIE  126 (471)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCC----CCCCCCCEEEEEECCEEEE
T ss_conf             797699999999967975999772898997598999864618998899999998530----3053774589998995899


Q ss_pred             EECCCCCC-CCCC-----------CCC-CCCCCHHHHHHCCCCCCCCCCEEECC-CCHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             42134466-7688-----------743-22332013321044780030020003-2101320000688878777642764
Q gi|254781115|r   91 ITTLRSDL-ITDG-----------RYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA  156 (416)
Q Consensus        91 i~~~R~e~-~~~~-----------~~~-~~~~~~~~~eDl~RRDFTINAla~~~-~~~l~Dp~gG~~DL~~~~ir~v~~~  156 (416)
T Consensus       127 VtTFR~~~~~~~~~~~~~~~~~~g~~lrdn~~g-tieeDa~RRDFTINALyyd~~~~~i~D~~gG~~DL~~~~iR~IGdP  205 (471)
T PRK11623        127 VATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFG-SIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKEGVIRLIGNP  205 (471)
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCC-CHHHHHHHCCCCCHHHEECCCCCEEECCCCCHHHHHCCCEECCCCH
T ss_conf             963357766666666654426776032034558-7888866327520221122799967689898999965955502798


Q ss_pred             CCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             31001042100332012201364331111000123333210222057768878864211018999998753002334688
Q gi|254781115|r  157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL  236 (416)
Q Consensus       157 ~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifp  236 (416)
T Consensus       206 ~~Rf~EDpvRmLRAvRFaakL~-f~i~~~t~~~I~~~~~lL~~i~~aRLfdE~lKLf~sG~a~~~~~~L~~~gL~~~LfP  284 (471)
T PRK11623        206 ETRYREDPVRMLRAVRFAAKLD-MRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFP  284 (471)
T ss_pred             HHHHHHCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHH
T ss_conf             9997667899999999999719-976878999999999988548876789999999865858999999998687676515


Q ss_pred             CCCCCC-------HHHH-H-HHHHHHHH--CCCCCCHHHHHHHHCCC
Q ss_conf             701058-------5789-8-77867763--17880167666520477
Q gi|254781115|r  237 DVQEIS-------LDQL-S-QVIEAEQV--FEWKIDSLLRFIVLISW  272 (416)
Q Consensus       237 el~~~~-------~~~l-~-~~~~~~~~--~~~~~~~~lrla~Ll~~  272 (416)
T Consensus       285 ~~~~~l~~~~~~~~~~~i~~aL~nTD~RI~~gK~VtPaFLfAalLW~  331 (471)
T PRK11623        285 TITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWY  331 (471)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             27877631267089999999999799998688977829999999718