HHsearch alignment for GI: 254781115 and conserved domain: PRK13298
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional.
Probab=100.00 E-value=0 Score=485.14 Aligned_cols=347 Identities=24% Similarity=0.325 Sum_probs=253.8
Q ss_pred EEEEEHHHHHHHHCCCCCCEEEEEE-ECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCC-
Q ss_conf 5999706998887788986089998-08989999999876995621343144699998998886421344667688743-
Q gi|254781115|r 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA- 105 (416)
Q Consensus 28 ~~~~VGG~VRD~ll~~~~~DiD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~~R~e~~~~~~~~- 105 (416)
T Consensus 2 k~YlVGGaVRD~LLg~~~~D~D~vv~g~~p~~~~~~~----~--~~vGk~f~v~--l~~~~~~e~~~ar~e~k~~~g~~g 73 (413)
T PRK13298 2 KKYLVGGAVRDSLLNLPVQDRDWVVVGSTPQEMLSIN----Y--QQVGKDFPVF--LHPESHEEYSLARTERKSGVGYTG 73 (413)
T ss_pred CEEEECCHHHHHHCCCCCCCEEEECCCCCHHHHHHHH----H--HHCCCCEEEE--EECCCCEEEEEEEEEECCCCCCCC
T ss_conf 7799630998997699998846754799899999841----5--6428863899--988876699998776336777477
Q ss_pred ---CCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEEEECC---CC
Q ss_conf ---223320133210447800300200032101320000688878777642764310010421003320122013---64
Q gi|254781115|r 106 ---KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GE 179 (416)
Q Consensus 106 ---~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~RFasrl---g~ 179 (416)
T Consensus 74 ~~~~~~~~~tleeDl~RRDfTINAmA~d~~G~liDp~~G~~DL~~~ilR~v~~---~F~EDPLRilRa~RFaar~~~Lg- 149 (413)
T PRK13298 74 FIFDTSSSITLEEDLYRRDLTINAIAQDSNGNYIDPFNGQKDIQLRLLRHVSE---SFSEDPLRVLRVARFAALLHHLG- 149 (413)
T ss_pred EEEECCCCCCHHHHHHHCCCCCCEEEECCCCCEEECCCCHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHCCCCC-
T ss_conf 25306888788999886257410159999998761798999996796548987---76668789999999998516799-
Q ss_pred CCCCCCCHHHHHHHH--HHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH------------HH
Q ss_conf 331111000123333--2102220577688788642110189999987530023346887010585------------78
Q gi|254781115|r 180 KNIDSDGLVASIKAK--KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL------------DQ 245 (416)
Q Consensus 180 f~id~~t~~ai~~~~--~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~------------~~ 245 (416)
T Consensus 150 F~I~~eT~~lm~~~~~~~el~~ls~ERv~~E~~K~L~~~~P~~~~~~L~~~g~l~~i~PEl~~l~gv~q~~~~~~~~~d~ 229 (413)
T PRK13298 150 FRIAKETMILMKIMVKKHELLYLTPERIWKETEKALITDNPHVYFQVLKNCNALKFLFPEINFLYEIPYFTNSFFKNFNL 229 (413)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHCCCHHHHCCCCCCHHHCCCCCCH
T ss_conf 84587999999998704862116988999999999769990899999998088877571568762998753322766433
Q ss_pred HHHHH-HHHHHCCCCCCHHHHHHHHCCCCCHH-------------------HHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 98778-67763178801676665204776857-------------------89988753034256777788887541143
Q gi|254781115|r 246 LSQVI-EAEQVFEWKIDSLLRFIVLISWQDKK-------------------SILSMAKKFSLPREIRYFLISFFNCNFNQ 305 (416)
Q Consensus 246 l~~~~-~~~~~~~~~~~~~lrla~Ll~~~~~~-------------------~~~~~~~rlkl~~~~~~~l~~~~~~~~~~ 305 (416)
T Consensus 230 ~~h~l~~l~~a~~~~~~~~~RfaaL~hdlgK~~t~~~~~p~h~~he~~g~~~i~~lc~RLkvPn~~~~LA~lv~~~h~~~ 309 (413)
T PRK13298 230 GNYTMTGLSKISKLTKDIDIRFSYLCQFLGRMLNIINSSTKKVFFDKELASLIKNLCNRFKIPSEIRNLSKINSGFYKFL 309 (413)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999871798889999999863445787543420110234147999999998489799999999999999987
Q ss_pred CC---CCHHHHHHHHHHCC---CHHHHHHHHHHHHHH---CCCC---CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHC
Q ss_conf 33---67246678998708---024551698999864---0777---601389999999877512888889887899965
Q gi|254781115|r 306 KT---LSIPEIKKLFYLYG---DKVMIAKLKIFLALH---YNNL---THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 (416)
Q Consensus 306 ~~---~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~---~~~~---~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~~ 373 (416)
T Consensus 310 ~~~~~l~~~~ll~ll~~~Da~RrPer~~~~l~~c~ad~~~~~~~~~~~~~q~~~l~~a~~~a~-------sV~~~~li~~ 382 (413)
T PRK13298 310 YNIHYQSSKMIITFFSIIDAWRKPNRIRKLIFLNQFNLLRYKKNINYSFFQGNLLKYAFNVTK-------KISVKDIIKM 382 (413)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-------CCCHHHHHHC
T ss_conf 404208999999999972752588999999999699885423654555608999999999986-------7998999877
Q ss_pred CCCCCHHHHHHHHHHHHHHHC
Q ss_conf 898777999999999999963
Q gi|254781115|r 374 GIPPGKKVGNILVHCKQEWIN 394 (416)
Q Consensus 374 Gi~pGp~iG~iL~~l~~~~i~ 394 (416)
T Consensus 383 G~~-G~~Ig~aL~~~Ri~ai~ 402 (413)
T PRK13298 383 GFK-GINIKNELYRLRIHALK 402 (413)
T ss_pred CCC-HHHHHHHHHHHHHHHHH
T ss_conf 997-39999999999999999