HHsearch alignment for GI: 254781115 and conserved domain: cd05397
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=93.01 E-value=0.18 Score=29.46 Aligned_cols=37 Identities=32% Similarity=0.271 Sum_probs=31.7
Q ss_pred HHHHHHHHHHC--CCEEEEEHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999999978--9859997069988877889860899980
Q gi|254781115|r 15 LINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIATT 53 (416)
Q Consensus 15 ~~~i~~~l~~~--g~~~~~VGG~VRD~ll~~~~~DiD~~~~ 53 (416)
T Consensus 4 l~~i~~~l~~~~~~~~i~~~Gs~~r~~~--~~~~DID~~~v 42 (49)
T cd05397 4 LDIIKERLKKLVPGYEIVVYGSLVRGLL--KKSSDIDLACV 42 (49)
T ss_pred HHHHHHHHHHHCCCCEEEEEHHHHHHHH--HCCCCCCEEEE
T ss_conf 9999999985289927998788989886--03456643789