HHsearch results for GI: 254781115 and protein with PDBid: 1miw_A
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=0 Score=641.84 Aligned_cols=388 Identities=24% Similarity=0.320 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEEC
Q ss_conf 89999999997898599970699888778898608999808989999999876995621343144699998998886421
Q gi|254781115|r 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITT 93 (416)
Q Consensus 14 ~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~ 93 (416)
++..|++.+.++|+++|+|||||||+|||++++||||||++.|+++++.|. +.+++|.+|||++++.++..+||||
T Consensus 7 ~a~~i~~~l~~~G~~~ylVGG~VRD~lLg~~~~DiDi~~~~~~~~~~~~~~----~~~~~g~~~gt~~~~~~~~~~ei~t 82 (404)
T 1miw_A 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFP----KTIDVGSKHGTVVVVHKGKAYEVTT 82 (404)
T ss_dssp HHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCS----SEEEEEGGGTEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH----HHHCCCCCCCEEEEEECCEEEEEEE
T ss_conf 999999999968997999888999998599999989885898999999866----5322375466699988897999999
Q ss_pred CCCCCCC-CCCCC-CCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEE
Q ss_conf 3446676-88743-223320133210447800300200032101320000688878777642764310010421003320
Q gi|254781115|r 94 LRSDLIT-DGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 (416)
Q Consensus 94 ~R~e~~~-~~~~~-~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~ 171 (416)
+|+|.|+ ++++| .+++++||++||.|||||||||||+.+|.++|||||++||++|+||+||+|++||.|||||||||+
T Consensus 83 ~r~e~~~~~~~~~~~~~~~~~i~~Dl~RRDFTINA~a~~~~~~liDp~~G~~DL~~~~iR~v~~~~~~f~eDpLRiLRa~ 162 (404)
T 1miw_A 83 FKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDEYGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAV 162 (404)
T ss_dssp CEECC---------CCEECSCHHHHHHTSSBSGGGCEECTTCCEECTTCHHHHHHHTEECBSSCHHHHHHHCTHHHHHHH
T ss_pred EEECCCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECCCCCEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98315556775012204566567676624763200367799987657898588864766665774434112478999999
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12201364331111000123333210222057768878864211018999998753002334688701058578987786
Q gi|254781115|r 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 (416)
Q Consensus 172 RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~ 251 (416)
||+|+|| |.||++|..+|+++++.|..||+||||+||.|||.+++|..+++.|.++|++. ++|++.... ...+...
T Consensus 163 RFaa~l~-f~i~~~t~~ai~~~~~~L~~ls~ERI~~El~kiL~~~~~~~~l~~l~~~gl~~-~lp~l~~~~--~~~~~~~ 238 (404)
T 1miw_A 163 RFVSELG-FALAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNA-YLPGLAGKE--KQLRLAA 238 (404)
T ss_dssp HHHHHHC-CEECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTT-SSTTCSSCH--HHHHHGG
T ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH-HCCCCCCCH--HHHHHHH
T ss_conf 9876168-76451155654435655156888889999999975998999999999839686-481733213--6788998
Q ss_pred HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 77631788016766652047768578998875303425677778888754114333672466789987080245516989
Q gi|254781115|r 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 (416)
Q Consensus 252 ~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (416)
............+|++|+|+.+......++++|++|+++++.+..+...+...... .....+.++..+.+.......+
T Consensus 239 -~~~~~~~~~~~~~~a~ll~~l~~~~~~~il~~lk~s~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 316 (404)
T 1miw_A 239 -AYRWPWLAAREERWALLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRP-EAWTNEQLFSAGLERALSVETV 316 (404)
T ss_dssp -GSCGGGCCSHHHHHHHHHHHHTCSCHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSG-GGCCHHHHHHHHHHHHHHHHHH
T ss_pred -HHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf -73052113188888999750350247889988525999999999999999987642-2557999998788888739999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99864077760138999999987751288888988789996-58987779999999999999638888898999999999
Q gi|254781115|r 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~-~Gi~pGp~iG~iL~~l~~~~i~~~~~n~~e~l~~~lk~ 410 (416)
.... ...........+.+.+.....+..+.++|+|+|||+ +|++|||++|++|++++++|++|+++|++|++.+++++
T Consensus 317 ~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~i~G~dL~~~lg~~pGp~iG~iL~~l~~~~l~g~i~n~ke~l~~~l~~ 395 (404)
T 1miw_A 317 RAAF-TGAPPGPWHEKLRRRFASLPIKTKGELAVNGKDVIEWVGKPAGPWVKEALDAIWRAVVNGEVENEKERIYAWLME 395 (404)
T ss_dssp HHHH-HCCCSHHHHHHHHHHHTTCSCSSGGGCSSCHHHHHHHHTCCSSHHHHHHHHHHHHHHHTTSSCSCHHHHHHHHHH
T ss_pred HHHH-HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999-748855789999999974802027899848999999739990589999999999999539999969999999997
Q ss_pred HH
Q ss_conf 98
Q gi|254781115|r 411 LI 412 (416)
Q Consensus 411 l~ 412 (416)
-.
T Consensus 396 ~~ 397 (404)
T 1miw_A 396 RN 397 (404)
T ss_dssp HH
T ss_pred HH
T ss_conf 54