HHsearch results for GI: 254781115 and protein with PDBid: 3h38_A

>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00  E-value=0  Score=622.50  Aligned_cols=391  Identities=23%  Similarity=0.285  Sum_probs=304.3

Q ss_pred             CHHHHHHHHHH----HHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEE-CC
Q ss_conf             98899999999----97898599970699888778898608999808989999999876995621343144699998-99
Q gi|254781115|r   12 DSDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC-RK   86 (416)
Q Consensus        12 ~~~~~~i~~~l----~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~   86 (416)
                      ++.+.+|++.+    .+.|+++|+|||||||+|||++|+|+||||+++|+++++.+++.....+.++.+|||++++. ++
T Consensus        16 ~~~~~~i~~~l~~~~~~~~~~~ylVGG~VRD~Llg~~~~DiDi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (441)
T 3h38_A           16 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKGG   95 (441)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEEEETTS
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEECCEEEEEEEEEECC
T ss_conf             98999999999999998599599973199999779889998988679889999999986798599657179999998698


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC----CHHHHHCCCHHHHHHHHHHHCCCCCCHHHC
Q ss_conf             8886421344667688743223320133210447800300200032----101320000688878777642764310010
Q gi|254781115|r   87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILE  162 (416)
Q Consensus        87 ~~~di~~~R~e~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~----~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~E  162 (416)
                      ..+||||+|+|.|+.+++.|.++.+||++||.||||||||||++++    |.|+|||||+.||++|+||+||++  ||.|
T Consensus        96 ~~~ei~~~R~e~~~~~~~~p~v~~~si~eDl~RRDFTiNAma~~~~~~~~g~l~Dp~~G~~DL~~~~iR~v~~~--~f~e  173 (441)
T 3h38_A           96 LRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHTL--SFVD  173 (441)
T ss_dssp             CEEEEEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSSHHHHHHTTEECBSSTT--HHHH
T ss_pred             EEEEEECCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCHH--HHHH
T ss_conf             79997455100246789898477466044345035401344345555778856689898788888876500203--3433


Q ss_pred             CCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             421003320122013643311110001233332--102220577688788642110189999987530023346887010
Q gi|254781115|r  163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE  240 (416)
Q Consensus       163 DpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~--~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~  240 (416)
                      ||||||||+||+|+|| |+|+++|..+|+++++  .|..||+||||+||.|||.+++|..+++.|.++|+++.+||++..
T Consensus       174 DpLRiLRa~RF~a~l~-f~i~~~t~~ai~~~~~~~~l~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifPel~~  252 (441)
T 3h38_A          174 DPTRILRAIRFEQRFD-FRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYY  252 (441)
T ss_dssp             CTTHHHHHHHHHHHTT-CEECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTTCCC
T ss_pred             CHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf             8899999999875237-777710336899976666662011889999999999763899999999993978986553322


Q ss_pred             CCHH--HHHHHHHH----HHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC-----CCC
Q ss_conf             5857--89877867----763178801676665204776857899887530342567777888875411433-----367
Q gi|254781115|r  241 ISLD--QLSQVIEA----EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLS  309 (416)
Q Consensus       241 ~~~~--~l~~~~~~----~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~-----~~~  309 (416)
                      ....  ...++...    .........+...++.++...+.+....+++++++|++..+.+..+...+....     ...
T Consensus       253 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~~all~~l~~~~~~~~~~~~~~rl~lsk~~~~~i~~l~~~~~~~~~~~~~~~~  332 (441)
T 3h38_A          253 TPSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEIRHVEKSAPALLEMLSERVP  332 (441)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             73066899999999999986167165999999987412125559999999745899999999999989999998641367


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             24667899870802455169899986407776013899999998775128888898878999658987779999999999
Q gi|254781115|r  310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK  389 (416)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~~Gi~pGp~iG~iL~~l~  389 (416)
                      ...+.++....+....    ...  ...  ........+..++..+.  ..+.+||+|+|||++|++|||++|++|++++
T Consensus       333 ~~~~~~l~~~~~~~~l----~~~--l~~--~~~~~~~~~~~~l~~~~--~~~~~~I~G~dL~~lGi~pGp~iG~iL~~l~  402 (441)
T 3h38_A          333 ASFVYPLVKGVSNETI----CHF--LAY--LSGEKEGLFKSYLLKIK--NTKLEKINGEYLIRKGITSGKIIGEVLEKIL  402 (441)
T ss_dssp             GGGTHHHHTTCCHHHH----HHH--HTT--CCHHHHHHHHHHHHHHH--SSCSCSSCCHHHHTTTCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHH----HHH--HHH--CCCCHHHHHHHHHHHHC--CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             9999998752687899----999--986--46244999999998851--6898993999998787970389999999999


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             99963888889899999999998743
Q gi|254781115|r  390 QEWINSSFQLSQEDLHHLLRKLIASS  415 (416)
Q Consensus       390 ~~~i~~~~~n~~e~l~~~lk~l~~~~  415 (416)
                      ++|++|+++|++|++.++++.+..+-
T Consensus       403 ~~~l~g~~~n~eeaL~~~~~~l~~~~  428 (441)
T 3h38_A          403 MKKLDGDTRDEEEILEEVLASLETEG  428 (441)
T ss_dssp             HHHHHCCSSCSSHHHHHHHHHC----
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99960999998999999999999866