HHsearch results for GI: 254781115 and protein with PDBid: 3h38_A
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=0 Score=622.50 Aligned_cols=391 Identities=23% Similarity=0.285 Sum_probs=304.3
Q ss_pred CHHHHHHHHHH----HHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEE-CC
Q ss_conf 98899999999----97898599970699888778898608999808989999999876995621343144699998-99
Q gi|254781115|r 12 DSDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC-RK 86 (416)
Q Consensus 12 ~~~~~~i~~~l----~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~ 86 (416)
++.+.+|++.+ .+.|+++|+|||||||+|||++|+|+||||+++|+++++.+++.....+.++.+|||++++. ++
T Consensus 16 ~~~~~~i~~~l~~~~~~~~~~~ylVGG~VRD~Llg~~~~DiDi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (441)
T 3h38_A 16 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKGG 95 (441)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEECCEEEEEEEEEECC
T ss_conf 98999999999999998599599973199999779889998988679889999999986798599657179999998698
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC----CHHHHHCCCHHHHHHHHHHHCCCCCCHHHC
Q ss_conf 8886421344667688743223320133210447800300200032----101320000688878777642764310010
Q gi|254781115|r 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162 (416)
Q Consensus 87 ~~~di~~~R~e~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~----~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~E 162 (416)
..+||||+|+|.|+.+++.|.++.+||++||.||||||||||++++ |.|+|||||+.||++|+||+||++ ||.|
T Consensus 96 ~~~ei~~~R~e~~~~~~~~p~v~~~si~eDl~RRDFTiNAma~~~~~~~~g~l~Dp~~G~~DL~~~~iR~v~~~--~f~e 173 (441)
T 3h38_A 96 LRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHTL--SFVD 173 (441)
T ss_dssp CEEEEEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSSHHHHHHTTEECBSSTT--HHHH
T ss_pred EEEEEECCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCHH--HHHH
T ss_conf 79997455100246789898477466044345035401344345555778856689898788888876500203--3433
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 421003320122013643311110001233332--102220577688788642110189999987530023346887010
Q gi|254781115|r 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 (416)
Q Consensus 163 DpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~--~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~ 240 (416)
||||||||+||+|+|| |+|+++|..+|+++++ .|..||+||||+||.|||.+++|..+++.|.++|+++.+||++..
T Consensus 174 DpLRiLRa~RF~a~l~-f~i~~~t~~ai~~~~~~~~l~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifPel~~ 252 (441)
T 3h38_A 174 DPTRILRAIRFEQRFD-FRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYY 252 (441)
T ss_dssp CTTHHHHHHHHHHHTT-CEECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTTCCC
T ss_pred CHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 8899999999875237-777710336899976666662011889999999999763899999999993978986553322
Q ss_pred CCHH--HHHHHHHH----HHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC-----CCC
Q ss_conf 5857--89877867----763178801676665204776857899887530342567777888875411433-----367
Q gi|254781115|r 241 ISLD--QLSQVIEA----EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLS 309 (416)
Q Consensus 241 ~~~~--~l~~~~~~----~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~-----~~~ 309 (416)
.... ...++... .........+...++.++...+.+....+++++++|++..+.+..+...+.... ...
T Consensus 253 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~~all~~l~~~~~~~~~~~~~~rl~lsk~~~~~i~~l~~~~~~~~~~~~~~~~ 332 (441)
T 3h38_A 253 TPSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEIRHVEKSAPALLEMLSERVP 332 (441)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 73066899999999999986167165999999987412125559999999745899999999999989999998641367
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 24667899870802455169899986407776013899999998775128888898878999658987779999999999
Q gi|254781115|r 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 (416)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~~Gi~pGp~iG~iL~~l~ 389 (416)
...+.++....+.... ... ... ........+..++..+. ..+.+||+|+|||++|++|||++|++|++++
T Consensus 333 ~~~~~~l~~~~~~~~l----~~~--l~~--~~~~~~~~~~~~l~~~~--~~~~~~I~G~dL~~lGi~pGp~iG~iL~~l~ 402 (441)
T 3h38_A 333 ASFVYPLVKGVSNETI----CHF--LAY--LSGEKEGLFKSYLLKIK--NTKLEKINGEYLIRKGITSGKIIGEVLEKIL 402 (441)
T ss_dssp GGGTHHHHTTCCHHHH----HHH--HTT--CCHHHHHHHHHHHHHHH--SSCSCSSCCHHHHTTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHH----HHH--HHH--CCCCHHHHHHHHHHHHC--CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999998752687899----999--986--46244999999998851--6898993999998787970389999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99963888889899999999998743
Q gi|254781115|r 390 QEWINSSFQLSQEDLHHLLRKLIASS 415 (416)
Q Consensus 390 ~~~i~~~~~n~~e~l~~~lk~l~~~~ 415 (416)
++|++|+++|++|++.++++.+..+-
T Consensus 403 ~~~l~g~~~n~eeaL~~~~~~l~~~~ 428 (441)
T 3h38_A 403 MKKLDGDTRDEEEILEEVLASLETEG 428 (441)
T ss_dssp HHHHHCCSSCSSHHHHHHHHHC----
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99960999998999999999999866