Query gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 416
No_of_seqs 186 out of 2831
Neff 9.2
Searched_HMMs 23785
Date Wed Jun 1 02:19:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781115.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ou5_A TRNA CCA-adding enzyme, 100.0 0 0 655.3 15.0 391 5-410 46-447 (448)
2 1miw_A TRNA CCA-adding enzyme; 100.0 0 0 641.8 24.4 388 14-412 7-397 (404)
3 3h38_A TRNA nucleotidyl transf 100.0 0 0 622.5 23.0 391 12-415 16-428 (441)
4 1vfg_A A-adding enzyme, poly A 100.0 0 0 587.8 19.1 365 18-396 2-383 (390)
5 2fcl_A Hypothetical protein TM 95.0 0.11 4.7E-06 29.3 7.8 78 15-93 22-106 (169)
6 1no5_A Hypothetical protein HI 71.3 3.3 0.00014 19.5 3.6 43 10-54 9-53 (114)
7 1r89_A TRNA nucleotidyltransfe 63.1 6.7 0.00028 17.5 8.8 80 15-95 28-115 (437)
8 3irh_A HD domain protein; phos 54.4 6.9 0.00029 17.4 2.6 36 121-156 19-62 (480)
9 1wot_A Putative minimal nucleo 53.3 9.7 0.00041 16.4 3.6 38 16-55 14-52 (98)
10 1ylq_A Putative nucleotidyltra 47.4 12 0.0005 15.8 4.9 39 14-53 3-43 (96)
11 1vi4_A Regulator of ribonuclea 37.3 5.7 0.00024 18.0 -0.0 19 34-53 49-67 (174)
12 1j3l_A Demethylmenaquinone met 34.6 6.7 0.00028 17.5 -0.0 15 34-48 45-59 (164)
13 2pq7_A Predicted HD superfamil 27.6 24 0.001 13.7 6.5 48 260-307 55-117 (220)
14 1q5x_A Regulator of RNAse E ac 27.3 10 0.00044 16.2 -0.0 13 36-48 48-60 (161)
15 2qgs_A Protein Se1688; alpha-h 26.6 25 0.0011 13.6 3.8 45 260-304 48-102 (225)
16 3c8o_A Regulator of ribonuclea 26.4 11 0.00045 16.1 -0.1 15 34-48 46-60 (162)
17 1nln_A Adenain; thiol hydrolas 25.2 22 0.00092 14.0 1.3 21 126-146 57-81 (204)
18 2b4v_A RNA editing complex pro 25.0 27 0.0011 13.4 3.9 37 15-54 48-85 (468)
19 2hw2_A Rifampin ADP-ribosyl tr 22.1 25 0.0011 13.6 1.1 59 135-198 74-134 (143)
20 1dxs_A P53-like transcription 21.2 32 0.0013 12.9 2.6 33 365-398 39-71 (80)
21 2c5q_A RRAA-like protein YER01 20.2 17 0.00073 14.7 -0.0 14 132-147 113-126 (240)
No 1
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=0 Score=655.31 Aligned_cols=391 Identities=31% Similarity=0.508 Sum_probs=325.7
Q ss_pred CCCHHC---CCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEC-CCCCCCEE
Q ss_conf 575221---99889999999997898599970699888778898608999808989999999876995621-34314469
Q gi|254781115|r 5 VQHKWF---HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTI 80 (416)
Q Consensus 5 ~~~~~~---~~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~ 80 (416)
.++|++ ..+++.+|++.+.++|+++|+|||||||+|||++++|+||||+++|++++++|++.+.+.+. .|.+|||+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~g~e~y~VGG~VRD~llg~~~~DiDi~~~~~p~~~~~~~~~~~~~~~~~~g~~~gt~ 125 (448)
T 1ou5_A 46 LQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTI 125 (448)
T ss_dssp CCCHHHHHHSCTTHHHHHHHHHHTTCCEEEESTTTHHHHHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCE
T ss_pred CCCHHHHHHCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 37813454368899999999998799899973699998779889998999948899999999974981047678413189
Q ss_pred EEEECCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 99989988864213446676887432233201332104478003002000321013200006888787776427643100
Q gi|254781115|r 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 (416)
Q Consensus 81 ~~~~~~~~~di~~~R~e~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~~ir~v~~~~~rf 160 (416)
++..++..+||||+|+|.|++||+++++++++|++||.|||||||||||+++|+|+|||||++||++|+||+||+|++||
T Consensus 126 ~~~~~~~~~ei~~~r~e~~~~~~~~~~~~~~~~~~Dl~RRDFTINAma~~~~g~i~D~~~G~~DL~~~~ir~v~~~~~~f 205 (448)
T 1ou5_A 126 TARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRI 205 (448)
T ss_dssp EECTTTTCEEEEECCS------------SSCCSSCCGGGSSBGGGSCEECSSCBEECSSSHHHHTTTTCCCBSSTTTTTS
T ss_pred EEEECCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCEECCCCCHHHHHCCCEEECCCHHHHH
T ss_conf 99989979999999877325898886244777243442256412237881699883898987787478512437827865
Q ss_pred HCCCCCEEEEEEEEECCCCC--CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 10421003320122013643--3111100012333321022205776887886421101899999875300233468870
Q gi|254781115|r 161 LEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 (416)
Q Consensus 161 ~EDpLRiLRa~RFasrlg~f--~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel 238 (416)
.|||||||||+||+|+||+. .++++|+.+|+++++.|..+|+||||+||.|||.+++|..++..|.++|+++.+||..
T Consensus 206 ~eDplRiLRa~RF~a~l~f~~~~~~~~t~~ai~~~~~~L~~lS~ERI~~El~KiL~~~~~~~~l~~L~e~gll~~i~~~~ 285 (448)
T 1ou5_A 206 QEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPA 285 (448)
T ss_dssp SSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTCCC
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCHHH
T ss_conf 43620899999998740010110208899999987643134788899999999975998899999999878777648166
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHHH
Q ss_conf 105857898778677631788016766652047768578998875303425677778888754114333--672466789
Q gi|254781115|r 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT--LSIPEIKKL 316 (416)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~ 316 (416)
.. +...+.+..... .....++++++++|+++.+ .+..++++|++|+++++.+..+...+..... .....++.+
T Consensus 286 ~~-~l~~~~~~~~~l--~~~~~~~~~~LaaLl~~~~--~~~~~~~rLklsk~~~~~i~~l~~~~~~l~~~~~~~~~~~~~ 360 (448)
T 1ou5_A 286 NA-SLEEFDKVSKNV--DGFSPKPVTLLASLFKVQD--DVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPY 360 (448)
T ss_dssp CS-CCHHHHHHHHHH--TTSCCCHHHHHGGGCCSTT--TTHHHHHHHCCCTTHHHHHHHHTTTTTTTSCCCSSSSTTHHH
T ss_pred HH-HHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 75-799999999997--5158126678999975432--467899872167999999999999999998721304479999
Q ss_pred H---HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9---8708024551698999864077760138999999987751288888988789996589877799999999999996
Q gi|254781115|r 317 F---YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 (416)
Q Consensus 317 ~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~~Gi~pGp~iG~iL~~l~~~~i 393 (416)
. ........ ......... .......++.+..|..|.+||+|+|||++|++|||++|++|++++++|+
T Consensus 361 ~~~~~~~~~~~~--~~~~~~l~~--------~~~~~~ll~~~~~~~~p~lpI~G~DLm~lGi~pGP~iG~iLk~L~~~wi 430 (448)
T 1ou5_A 361 QDFIIDSREPDA--TTRVCELLK--------YQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWK 430 (448)
T ss_dssp HHHHHHCCSTTH--HHHHHHHHH--------HHTCHHHHHHHTTCCC---------------------------------
T ss_pred HHHHHHCCCCHH--HHHHHHHHH--------CCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999986035168--999999864--------5568999999971789999909999987879814899999999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 38888898999999999
Q gi|254781115|r 394 NSSFQLSQEDLHHLLRK 410 (416)
Q Consensus 394 ~~~~~n~~e~l~~~lk~ 410 (416)
++++++++|++++++|+
T Consensus 431 e~~~~~skeelL~~iKk 447 (448)
T 1ou5_A 431 KSGYQMEKDELLSYIKK 447 (448)
T ss_dssp -----------------
T ss_pred HCCCCCCHHHHHHHHCC
T ss_conf 78799999999998454
No 2
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=0 Score=641.84 Aligned_cols=388 Identities=24% Similarity=0.320 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEEC
Q ss_conf 89999999997898599970699888778898608999808989999999876995621343144699998998886421
Q gi|254781115|r 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITT 93 (416)
Q Consensus 14 ~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~ 93 (416)
++..|++.+.++|+++|+|||||||+|||++++||||||++.|+++++.|. +.+++|.+|||++++.++..+||||
T Consensus 7 ~a~~i~~~l~~~G~~~ylVGG~VRD~lLg~~~~DiDi~~~~~~~~~~~~~~----~~~~~g~~~gt~~~~~~~~~~ei~t 82 (404)
T 1miw_A 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFP----KTIDVGSKHGTVVVVHKGKAYEVTT 82 (404)
T ss_dssp HHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCS----SEEEEEGGGTEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH----HHHCCCCCCCEEEEEECCEEEEEEE
T ss_conf 999999999968997999888999998599999989885898999999866----5322375466699988897999999
Q ss_pred CCCCCCC-CCCCC-CCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEE
Q ss_conf 3446676-88743-223320133210447800300200032101320000688878777642764310010421003320
Q gi|254781115|r 94 LRSDLIT-DGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 (416)
Q Consensus 94 ~R~e~~~-~~~~~-~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~ 171 (416)
+|+|.|+ ++++| .+++++||++||.|||||||||||+.+|.++|||||++||++|+||+||+|++||.|||||||||+
T Consensus 83 ~r~e~~~~~~~~~~~~~~~~~i~~Dl~RRDFTINA~a~~~~~~liDp~~G~~DL~~~~iR~v~~~~~~f~eDpLRiLRa~ 162 (404)
T 1miw_A 83 FKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDEYGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAV 162 (404)
T ss_dssp CEECC---------CCEECSCHHHHHHTSSBSGGGCEECTTCCEECTTCHHHHHHHTEECBSSCHHHHHHHCTHHHHHHH
T ss_pred EEECCCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECCCCCEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98315556775012204566567676624763200367799987657898588864766665774434112478999999
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12201364331111000123333210222057768878864211018999998753002334688701058578987786
Q gi|254781115|r 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 (416)
Q Consensus 172 RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~ 251 (416)
||+|+|| |.||++|..+|+++++.|..||+||||+||.|||.+++|..+++.|.++|++. ++|++.... ...+...
T Consensus 163 RFaa~l~-f~i~~~t~~ai~~~~~~L~~ls~ERI~~El~kiL~~~~~~~~l~~l~~~gl~~-~lp~l~~~~--~~~~~~~ 238 (404)
T 1miw_A 163 RFVSELG-FALAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNA-YLPGLAGKE--KQLRLAA 238 (404)
T ss_dssp HHHHHHC-CEECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTT-SSTTCSSCH--HHHHHGG
T ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH-HCCCCCCCH--HHHHHHH
T ss_conf 9876168-76451155654435655156888889999999975998999999999839686-481733213--6788998
Q ss_pred HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 77631788016766652047768578998875303425677778888754114333672466789987080245516989
Q gi|254781115|r 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 (416)
Q Consensus 252 ~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (416)
............+|++|+|+.+......++++|++|+++++.+..+...+...... .....+.++..+.+.......+
T Consensus 239 -~~~~~~~~~~~~~~a~ll~~l~~~~~~~il~~lk~s~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 316 (404)
T 1miw_A 239 -AYRWPWLAAREERWALLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRP-EAWTNEQLFSAGLERALSVETV 316 (404)
T ss_dssp -GSCGGGCCSHHHHHHHHHHHHTCSCHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSG-GGCCHHHHHHHHHHHHHHHHHH
T ss_pred -HHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf -73052113188888999750350247889988525999999999999999987642-2557999998788888739999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99864077760138999999987751288888988789996-58987779999999999999638888898999999999
Q gi|254781115|r 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~-~Gi~pGp~iG~iL~~l~~~~i~~~~~n~~e~l~~~lk~ 410 (416)
.... ...........+.+.+.....+..+.++|+|+|||+ +|++|||++|++|++++++|++|+++|++|++.+++++
T Consensus 317 ~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~i~G~dL~~~lg~~pGp~iG~iL~~l~~~~l~g~i~n~ke~l~~~l~~ 395 (404)
T 1miw_A 317 RAAF-TGAPPGPWHEKLRRRFASLPIKTKGELAVNGKDVIEWVGKPAGPWVKEALDAIWRAVVNGEVENEKERIYAWLME 395 (404)
T ss_dssp HHHH-HCCCSHHHHHHHHHHHTTCSCSSGGGCSSCHHHHHHHHTCCSSHHHHHHHHHHHHHHHTTSSCSCHHHHHHHHHH
T ss_pred HHHH-HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999-748855789999999974802027899848999999739990589999999999999539999969999999997
Q ss_pred HH
Q ss_conf 98
Q gi|254781115|r 411 LI 412 (416)
Q Consensus 411 l~ 412 (416)
-.
T Consensus 396 ~~ 397 (404)
T 1miw_A 396 RN 397 (404)
T ss_dssp HH
T ss_pred HH
T ss_conf 54
No 3
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=0 Score=622.50 Aligned_cols=391 Identities=23% Similarity=0.285 Sum_probs=304.3
Q ss_pred CHHHHHHHHHH----HHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEE-CC
Q ss_conf 98899999999----97898599970699888778898608999808989999999876995621343144699998-99
Q gi|254781115|r 12 DSDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC-RK 86 (416)
Q Consensus 12 ~~~~~~i~~~l----~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~ 86 (416)
++.+.+|++.+ .+.|+++|+|||||||+|||++|+|+||||+++|+++++.+++.....+.++.+|||++++. ++
T Consensus 16 ~~~~~~i~~~l~~~~~~~~~~~ylVGG~VRD~Llg~~~~DiDi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (441)
T 3h38_A 16 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKGG 95 (441)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEECCEEEEEEEEEECC
T ss_conf 98999999999999998599599973199999779889998988679889999999986798599657179999998698
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC----CHHHHHCCCHHHHHHHHHHHCCCCCCHHHC
Q ss_conf 8886421344667688743223320133210447800300200032----101320000688878777642764310010
Q gi|254781115|r 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162 (416)
Q Consensus 87 ~~~di~~~R~e~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~----~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~E 162 (416)
..+||||+|+|.|+.+++.|.++.+||++||.||||||||||++++ |.|+|||||+.||++|+||+||++ ||.|
T Consensus 96 ~~~ei~~~R~e~~~~~~~~p~v~~~si~eDl~RRDFTiNAma~~~~~~~~g~l~Dp~~G~~DL~~~~iR~v~~~--~f~e 173 (441)
T 3h38_A 96 LRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHTL--SFVD 173 (441)
T ss_dssp CEEEEEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSSHHHHHHTTEECBSSTT--HHHH
T ss_pred EEEEEECCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCHH--HHHH
T ss_conf 79997455100246789898477466044345035401344345555778856689898788888876500203--3433
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 421003320122013643311110001233332--102220577688788642110189999987530023346887010
Q gi|254781115|r 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 (416)
Q Consensus 163 DpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~--~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~ 240 (416)
||||||||+||+|+|| |+|+++|..+|+++++ .|..||+||||+||.|||.+++|..+++.|.++|+++.+||++..
T Consensus 174 DpLRiLRa~RF~a~l~-f~i~~~t~~ai~~~~~~~~l~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifPel~~ 252 (441)
T 3h38_A 174 DPTRILRAIRFEQRFD-FRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYY 252 (441)
T ss_dssp CTTHHHHHHHHHHHTT-CEECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTTCCC
T ss_pred CHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 8899999999875237-777710336899976666662011889999999999763899999999993978986553322
Q ss_pred CCHH--HHHHHHHH----HHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC-----CCC
Q ss_conf 5857--89877867----763178801676665204776857899887530342567777888875411433-----367
Q gi|254781115|r 241 ISLD--QLSQVIEA----EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK-----TLS 309 (416)
Q Consensus 241 ~~~~--~l~~~~~~----~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~-----~~~ 309 (416)
.... ...++... .........+...++.++...+.+....+++++++|++..+.+..+...+.... ...
T Consensus 253 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~~all~~l~~~~~~~~~~~~~~rl~lsk~~~~~i~~l~~~~~~~~~~~~~~~~ 332 (441)
T 3h38_A 253 TPSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEIRHVEKSAPALLEMLSERVP 332 (441)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 73066899999999999986167165999999987412125559999999745899999999999989999998641367
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 24667899870802455169899986407776013899999998775128888898878999658987779999999999
Q gi|254781115|r 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 (416)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~~Gi~pGp~iG~iL~~l~ 389 (416)
...+.++....+.... ... ... ........+..++..+. ..+.+||+|+|||++|++|||++|++|++++
T Consensus 333 ~~~~~~l~~~~~~~~l----~~~--l~~--~~~~~~~~~~~~l~~~~--~~~~~~I~G~dL~~lGi~pGp~iG~iL~~l~ 402 (441)
T 3h38_A 333 ASFVYPLVKGVSNETI----CHF--LAY--LSGEKEGLFKSYLLKIK--NTKLEKINGEYLIRKGITSGKIIGEVLEKIL 402 (441)
T ss_dssp GGGTHHHHTTCCHHHH----HHH--HTT--CCHHHHHHHHHHHHHHH--SSCSCSSCCHHHHTTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHH----HHH--HHH--CCCCHHHHHHHHHHHHC--CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999998752687899----999--986--46244999999998851--6898993999998787970389999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99963888889899999999998743
Q gi|254781115|r 390 QEWINSSFQLSQEDLHHLLRKLIASS 415 (416)
Q Consensus 390 ~~~i~~~~~n~~e~l~~~lk~l~~~~ 415 (416)
++|++|+++|++|++.++++.+..+-
T Consensus 403 ~~~l~g~~~n~eeaL~~~~~~l~~~~ 428 (441)
T 3h38_A 403 MKKLDGDTRDEEEILEEVLASLETEG 428 (441)
T ss_dssp HHHHHCCSSCSSHHHHHHHHHC----
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99960999998999999999999866
No 4
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=0 Score=587.77 Aligned_cols=365 Identities=22% Similarity=0.233 Sum_probs=286.5
Q ss_pred HHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 99999978985999706998887788986089998089899999998769956213431446999989988864213446
Q gi|254781115|r 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD 97 (416)
Q Consensus 18 i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~~R~e 97 (416)
|.+.++++|+++|+|||||||+|||++++|+|+||+++|.++++.|.+..+..+.+|.+|||+++++++..+||||+|+|
T Consensus 2 i~~~~~~~g~~~ylVGG~VRD~llg~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~ei~~~R~e 81 (390)
T 1vfg_A 2 VGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRE 81 (390)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSC
T ss_pred HHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCEEEEEEECCCC
T ss_conf 57999976996999730999987799798989997098799999998767976330676546999999989999841432
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC----CHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEE
Q ss_conf 67688743223320133210447800300200032----10132000068887877764276431001042100332012
Q gi|254781115|r 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 (416)
Q Consensus 98 ~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~----~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~EDpLRiLRa~RF 173 (416)
.|+.|++.++++++|++|||.||||||||||+|++ |+|+|||||++||++|+||+||++ ||.|||||||||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~eDl~RRDFTiNA~a~~~~~~~~g~liD~~~G~~Dl~~~~lr~v~~~--~f~EDplRiLR~~RF 159 (390)
T 1vfg_A 82 TYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHPV--SFIEDPVRILRALRF 159 (390)
T ss_dssp C---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTTEECBSSTT--HHHHCTTHHHHHHHH
T ss_pred CCCCCCCCCCEECCCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCHH--HHHHCHHHHHHHHHH
T ss_conf 467898545300688788987235752110124555678805668897899966665022113--155366899999999
Q ss_pred EECCCCCCCCCCCHHHHHH--HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013643311110001233--33210222057768878864211018999998753002334688701058578987786
Q gi|254781115|r 174 FAHYGEKNIDSDGLVASIK--AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 (416)
Q Consensus 174 asrlg~f~id~~t~~ai~~--~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~l~~~~~ 251 (416)
+|||| |+|+++|..+|++ ++..++.+|+||||+|+.|||.+++|..+++.|.++|+++.|||++.... ........
T Consensus 160 ~arl~-f~i~~~t~~~i~~~~~~~~l~~ls~ERI~~El~KiL~~~~~~~~l~~l~~~gil~~ifPel~~~~-~~~~~l~~ 237 (390)
T 1vfg_A 160 AGRLN-FKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNE-KVLQKLYA 237 (390)
T ss_dssp HHHHT-CEECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCCCCH-HHHHHHHH
T ss_pred HHHHC-CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHH
T ss_conf 88603-66663200679998776553200388889999999847879999999998295999755221114-57888898
Q ss_pred ---------HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHCC
Q ss_conf ---------77631788016766652047768578998875303425677778888754114-33367246678998708
Q gi|254781115|r 252 ---------AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYG 321 (416)
Q Consensus 252 ---------~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 321 (416)
...........++++++|+++.++.....+++++++|+...+.+..+...... ............++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~l~~L~~~~~~~~~~~~~~~l~ls~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 317 (390)
T 1vfg_A 238 LRKVVDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFMKFKLGSLKEELKKAKENYEVYRLL 317 (390)
T ss_dssp HHHHHHHHHHHGGGSCCCHHHHHHHHHHCSCCSSTTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSSSTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 65224688998764101049999999871588677899999846988999999999999999999861444599999851
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 0245516989998640777601389999999877512888889-88789996589877799999999999996388
Q gi|254781115|r 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP-LTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 (416)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~p-I~G~dL~~~Gi~pGp~iG~iL~~l~~~~i~~~ 396 (416)
.......+.. .. .. ......+..+++.+ ..+.+| ++|+||+++|++ ||++|++|++++++|+++-
T Consensus 318 ~~~~~~~l~~-~~--~~---~~~~~~~~~~l~~~---~~~k~p~~~g~dL~~~G~k-Gp~iG~~L~~l~~~~ld~~ 383 (390)
T 1vfg_A 318 KPLHTSVLLL-LM--LE---EELKEKIKLYLEKL---RKVKLPKEKIEELKKQGLK-GKELGERIEELKREIMNKI 383 (390)
T ss_dssp GGGGTHHHHH-HT--TS---GGGHHHHHHHHHHH---HHHSCC---------------------------------
T ss_pred CCCCHHHHHH-HH--HC---HHHHHHHHHHHHHC---CCCCCCCCCHHHHHHCCCC-HHHHHHHHHHHHHHHCCCH
T ss_conf 5134789999-98--57---56689999999862---5567888798999876998-3999999999999981638
No 5
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=95.01 E-value=0.11 Score=29.33 Aligned_cols=78 Identities=23% Similarity=0.189 Sum_probs=47.6
Q ss_pred HHHHHHHHHHCCCEEEEEHHHHHHHHCCC--CCCEEEEEEEC-CHHHHHHHHHHCCCCEECCCCC-C---CEEEEEECCE
Q ss_conf 99999999978985999706998887788--98608999808-9899999998769956213431-4---4699998998
Q gi|254781115|r 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSIS-Y---GTIKIICRKK 87 (416)
Q Consensus 15 ~~~i~~~l~~~g~~~~~VGG~VRD~ll~~--~~~DiD~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~---gt~~~~~~~~ 87 (416)
+..|.+.|++.|..-.++||+. =++-|. +++||||.++. +.+.+.+.|+..+......... + ....+..++.
T Consensus 22 l~~i~~~L~~~~v~~~l~Gs~A-~~~~G~~r~t~DIDi~i~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~f~~~~i~g~ 100 (169)
T 2fcl_A 22 LRXIYDRLXNEXVNWVVTGSLS-FALQGVPVEVHDIDIQTDEEGAYEIERIFSEFVSXXVRFSSTEXICSHFGELIIDGI 100 (169)
T ss_dssp HHHHHHHHTTSSCCEEEEHHHH-HHHTTCCCCCCSEEEEECHHHHHHHHHHTGGGEEEEEEEEECSSEEEEEEEEEETTE
T ss_pred HHHHHHHHHHCCCCEEEHHHHH-HHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCEECEEEEEEECCE
T ss_conf 9999999985599889707989-988698988775248985888999999999703267877754442253899988998
Q ss_pred EEEEEC
Q ss_conf 886421
Q gi|254781115|r 88 YFDITT 93 (416)
Q Consensus 88 ~~di~~ 93 (416)
.+|+.+
T Consensus 101 ~VDim~ 106 (169)
T 2fcl_A 101 XVEIMG 106 (169)
T ss_dssp EEEEEE
T ss_pred EEEEEC
T ss_conf 589864
No 6
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase, structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=71.34 E-value=3.3 Score=19.47 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHC--CCEEEEEHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 1998899999999978--98599970699888778898608999808
Q gi|254781115|r 10 FHDSDLINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIATTI 54 (416)
Q Consensus 10 ~~~~~~~~i~~~l~~~--g~~~~~VGG~VRD~ll~~~~~DiD~~~~~ 54 (416)
+....++.|.+.+.+. ..++|+-|-++|.- .++..||||+|..
T Consensus 9 l~~e~l~~I~~il~~~~~~~~v~LFGS~A~G~--~~~~SDIDl~I~~ 53 (114)
T 1no5_A 9 IKSEELAIVKTILQQLVPDYTVWAFGSRVKGK--AKKYSDLDLAIIS 53 (114)
T ss_dssp SCHHHHHHHHHHHHHHCTTSEEEEEGGGTTTC--CCTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCCCEEEEE
T ss_conf 59999999999999838997899989877898--6889986789983
No 7
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=63.09 E-value=6.7 Score=17.48 Aligned_cols=80 Identities=9% Similarity=-0.004 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECC----HHHHHHHH----HHCCCCEECCCCCCCEEEEEECC
Q ss_conf 99999999978985999706998887788986089998089----89999999----87699562134314469999899
Q gi|254781115|r 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTIL----PDRVMRIF----SKTRYKVIPTSISYGTIKIICRK 86 (416)
Q Consensus 15 ~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~gt~~~~~~~ 86 (416)
+..|.+.+++.+.+++++|-+.++-.|. ...|||+++-.+ .+.+.+.. ..........+.++=.+++..++
T Consensus 28 ~~~l~~~l~~~~~~v~~~GS~a~GT~L~-g~sDIDl~v~f~~~~~~e~l~~~~~~l~~~~~~~~~~~~a~~P~vk~~~~g 106 (437)
T 1r89_A 28 EEELRRRLDELGVEYVFVGSYARNTWLK-GSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRYAEHPYVHGVVKG 106 (437)
T ss_dssp HHHHHHHHHHHTCCEEEEHHHHHTCCCT-TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHSSSEEEEESSSEEEEEEETT
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCCCCC-CCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECC
T ss_conf 9999999996198799989775899999-911379999917999889999999999987555431121034289999811
Q ss_pred EEEEEECCC
Q ss_conf 888642134
Q gi|254781115|r 87 KYFDITTLR 95 (416)
Q Consensus 87 ~~~di~~~R 95 (416)
..+|+..+-
T Consensus 107 ~~VDivP~~ 115 (437)
T 1r89_A 107 VEVDVVPCY 115 (437)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
T ss_conf 676665456
No 8
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A*
Probab=54.39 E-value=6.9 Score=17.36 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=17.7
Q ss_pred CCCCCCEEECC--C----CHH-HHHCCCHHHHHHHH-HHHCCCC
Q ss_conf 80030020003--2----101-32000068887877-7642764
Q gi|254781115|r 121 DFTINALYADQ--Q----GKV-IDYVGGLNDLRNRT-IKFIGDA 156 (416)
Q Consensus 121 DFTINAla~~~--~----~~l-~Dp~gG~~DL~~~~-ir~v~~~ 156 (416)
-|..|||-+.- + .++ =||..|.=.+.... .+.|..|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~KiirDpihg~I~~~~~~~~~iIdtp 62 (480)
T 3irh_A 19 YFQSNAMTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSA 62 (480)
T ss_dssp -------CCCGGGCEEEEEEEEEETTTEEEEEEEHHHHHHHTSH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECHHHHHHHCCCH
T ss_conf 14023357874444689674585698730896879999862997
No 9
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=53.25 E-value=9.7 Score=16.40 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.8
Q ss_pred HHHHHHHHHCC-CEEEEEHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 99999999789-85999706998887788986089998089
Q gi|254781115|r 16 INILSLLNKGE-DKSCIVGGAVRDSLMNLSVQDIDIATTIL 55 (416)
Q Consensus 16 ~~i~~~l~~~g-~~~~~VGG~VRD~ll~~~~~DiD~~~~~~ 55 (416)
..|...+.++| .++|+-|-.+|+- ..+-.||||+|...
T Consensus 14 ~~i~~i~~k~~v~~v~LFGS~Arg~--~~~~SDIDi~V~~~ 52 (98)
T 1wot_A 14 EAVLSLCARHGAVRVRVFGSVARGE--AREDSDLDLLVAFE 52 (98)
T ss_dssp HHHHHHHHHHTCSSCEECSHHHHTC--CCTTCCCEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCCCEEEECC
T ss_conf 9999999983997899988874798--78999856788618
No 10
>1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=47.37 E-value=12 Score=15.80 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHC--CCEEEEEHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 899999999978--9859997069988877889860899980
Q gi|254781115|r 14 DLINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIATT 53 (416)
Q Consensus 14 ~~~~i~~~l~~~--g~~~~~VGG~VRD~ll~~~~~DiD~~~~ 53 (416)
.++.|.+.+.+. ..++|+.|.++|.-.- ....|+|++|-
T Consensus 3 ~lk~I~e~ik~~~~~~kV~LFGS~ArG~~~-~~~SDiDllVV 43 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYS-IGLSDIDVAIV 43 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSS-SCCCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCCCEEEEE
T ss_conf 899999999986899389998873158998-88886569999
No 11
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Probab=37.27 E-value=5.7 Score=17.95 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=8.2
Q ss_pred HHHHHHHCCCCCCEEEEEEE
Q ss_conf 69988877889860899980
Q gi|254781115|r 34 GAVRDSLMNLSVQDIDIATT 53 (416)
Q Consensus 34 G~VRD~ll~~~~~DiD~~~~ 53 (416)
..++++|-.-++.|+ ++++
T Consensus 49 ~~~~~al~~~~~GdV-lVvd 67 (174)
T 1vi4_A 49 SKVRDVLSQNGKGKV-LVVD 67 (174)
T ss_dssp HHHHHHHTSCCTTEE-EEEE
T ss_pred HHHHHHHHCCCCCCE-EEEE
T ss_conf 899999960598969-9998
No 12
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Thermus thermophilus} SCOP: c.8.7.1
Probab=34.61 E-value=6.7 Score=17.47 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.7
Q ss_pred HHHHHHHCCCCCCEE
Q ss_conf 699888778898608
Q gi|254781115|r 34 GAVRDSLMNLSVQDI 48 (416)
Q Consensus 34 G~VRD~ll~~~~~Di 48 (416)
..||..|-.-++.|+
T Consensus 45 ~~v~~~l~~~~~GdV 59 (164)
T 1j3l_A 45 ALVRKVLEEEGAGQV 59 (164)
T ss_dssp HHHHHHHTSCCBTEE
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 899999961698819
No 13
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=27.63 E-value=24 Score=13.74 Aligned_cols=48 Identities=2% Similarity=-0.180 Sum_probs=34.6
Q ss_pred CCHHHHHHHHCCCCCHH---------------HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 01676665204776857---------------8998875303425677778888754114333
Q gi|254781115|r 260 IDSLLRFIVLISWQDKK---------------SILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 (416)
Q Consensus 260 ~~~~lrla~Ll~~~~~~---------------~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~ 307 (416)
...++.+++|+||.++. .+..++....+|...+..+...+..|.....
T Consensus 55 D~~vv~lAALLHDIg~~k~~~~~~~h~~~~a~~a~~~L~~~~~~~~~i~~I~~~I~~hs~~~~ 117 (220)
T 2pq7_A 55 DLQKAIIAALLHDIKRPHEALTGVDHAESGAEYASGLLPTMGFDISFVAEVSKAIRSHRYSGG 117 (220)
T ss_dssp CHHHHHHHHHHTTTTHHHHHHHCCCHHHHHHHHHHHHGGGGTCCHHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999985540386426753489999999999998779999999999999998076557
No 14
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=27.26 E-value=10 Score=16.16 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=4.7
Q ss_pred HHHHHCCCCCCEE
Q ss_conf 9888778898608
Q gi|254781115|r 36 VRDSLMNLSVQDI 48 (416)
Q Consensus 36 VRD~ll~~~~~Di 48 (416)
+++++-.-++.|+
T Consensus 48 ~~~ai~~~~~G~V 60 (161)
T 1q5x_A 48 LYDLLEQNGRGRV 60 (161)
T ss_dssp HHHHHTSCCTTEE
T ss_pred HHHHHHCCCCCEE
T ss_conf 9999962397829
No 15
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: a.211.1.1
Probab=26.63 E-value=25 Score=13.62 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=34.6
Q ss_pred CCHHHHHHHHCCCCCH----------HHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 0167666520477685----------78998875303425677778888754114
Q gi|254781115|r 260 IDSLLRFIVLISWQDK----------KSILSMAKKFSLPREIRYFLISFFNCNFN 304 (416)
Q Consensus 260 ~~~~lrla~Ll~~~~~----------~~~~~~~~rlkl~~~~~~~l~~~~~~~~~ 304 (416)
...++.+++||||.+. ..+..++..+.+|...+..+...+..+..
T Consensus 48 D~~vv~~AAlLHDigd~k~~~~~~~~~~a~~~L~~~g~~~~~i~~V~~~I~~hs~ 102 (225)
T 2qgs_A 48 DTLVIELSSLLHDTVDSKLTDEILAYDQLKQFLSTLDLSSEISQQVLYIIKHMSY 102 (225)
T ss_dssp CCHHHHHHHHHTTTTCCSSSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 5999999999873132123451678999999998869999999999999997024
No 16
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa}
Probab=26.42 E-value=11 Score=16.10 Aligned_cols=15 Identities=7% Similarity=0.116 Sum_probs=6.7
Q ss_pred HHHHHHHCCCCCCEE
Q ss_conf 699888778898608
Q gi|254781115|r 34 GAVRDSLMNLSVQDI 48 (416)
Q Consensus 34 G~VRD~ll~~~~~Di 48 (416)
+.++.+|-.-.+.|+
T Consensus 46 ~~~~~al~~~~~G~V 60 (162)
T 3c8o_A 46 SLVKEQVDKDGKGKV 60 (162)
T ss_dssp HHHHHHHTSCCBTEE
T ss_pred HHHHHHHHCCCCCEE
T ss_conf 899999860497839
No 17
>1nln_A Adenain; thiol hydrolase, viral proteinase, peptide cofactor; 1.60A {Human adenovirus 2} SCOP: d.3.1.7 PDB: 1avp_A
Probab=25.19 E-value=22 Score=14.01 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=14.3
Q ss_pred CEEECCCCH---HHHHCC-CHHHHH
Q ss_conf 020003210---132000-068887
Q gi|254781115|r 126 ALYADQQGK---VIDYVG-GLNDLR 146 (416)
Q Consensus 126 Ala~~~~~~---l~Dp~g-G~~DL~ 146 (416)
|||+++... ++|||| --..|+
T Consensus 57 A~Aw~P~s~t~Y~FDPfGfsd~~L~ 81 (204)
T 1nln_A 57 AFAWNPRSKTCYLFEPFGFSDQRLK 81 (204)
T ss_dssp EEEEETTTTEEEEECTTCCCHHHHH
T ss_pred EEEECCCCCEEEEECCCCCCHHHHH
T ss_conf 7576587675888679888789999
No 18
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=24.96 E-value=27 Score=13.42 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCEEEEEHHHH-HHHHCCCCCCEEEEEEEC
Q ss_conf 9999999997898599970699-888778898608999808
Q gi|254781115|r 15 LINILSLLNKGEDKSCIVGGAV-RDSLMNLSVQDIDIATTI 54 (416)
Q Consensus 15 ~~~i~~~l~~~g~~~~~VGG~V-RD~ll~~~~~DiD~~~~~ 54 (416)
++.+++.+.+ +.++|+.|.+| ... +.+..|+|+|+..
T Consensus 48 L~~~v~~~~P-~a~V~~FGS~vt~Gl--~~~~SDvDl~l~~ 85 (468)
T 2b4v_A 48 LQGLADKWTP-DAKVYCCGSMVTYGQ--MERGSDLDLACMF 85 (468)
T ss_dssp HHHHHHHHCT-TCEEEEETHHHHHSS--CBTTCCEEEEEEC
T ss_pred HHHHHHHHCC-CCEEEEECCCCCCCC--CCCCCCCEEEEEC
T ss_conf 9999998789-977998507862887--8999882489755
No 19
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=22.10 E-value=25 Score=13.57 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=38.5
Q ss_pred HHHHCCCHHHHHH-HHHHHCCCCCCHHH-CCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 1320000688878-77764276431001-0421003320122013643311110001233332102
Q gi|254781115|r 135 VIDYVGGLNDLRN-RTIKFIGDAHHRIL-EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 (416)
Q Consensus 135 l~Dp~gG~~DL~~-~~ir~v~~~~~rf~-EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~ 198 (416)
|+-|.|-.+|=-| --=++.|||..|+. ..||||+.-+.=. -...++.+++++.....|+
T Consensus 74 iVEPtG~fEdDPNvTdkkfPGNPTrSyRS~~PLrIvgEvt~W-----~~hspe~lq~mr~~La~L~ 134 (143)
T 2hw2_A 74 IVEPEGAIEDDPNVTDKKLPGNPTRSYRTREPVWIVGELTDW-----VGHPPEQLAAMRQGLEELR 134 (143)
T ss_dssp EEEESSCCEECGGGSSSSSSSCTTCEEEESSCEEEEEEECCC-----CCCCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHHHHHHHHHHHH
T ss_conf 972677766686655788998986333347871888886144-----5699999999999999998
No 20
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=21.20 E-value=32 Score=12.94 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=24.1
Q ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8878999658987779999999999999638888
Q gi|254781115|r 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 (416)
Q Consensus 365 I~G~dL~~~Gi~pGp~iG~iL~~l~~~~i~~~~~ 398 (416)
++-.||.++|+++|. -.+|++.+.+..-..+..
T Consensus 39 lt~~dL~~lgI~~gH-r~kIl~~i~~lr~~~~~s 71 (80)
T 1dxs_A 39 LTIEDLGALKIPEQY-RMTIWRGLQDLKQGHDYS 71 (80)
T ss_dssp CCHHHHHHTTCCTTT-HHHHHHHHHHC-------
T ss_pred CCHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCC
T ss_conf 599999771999999-999999999999756578
No 21
>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function, structural genomics, unknown function, pseudo-knot; HET: CME; 1.70A {Saccharomyces cerevisiae}
Probab=20.24 E-value=17 Score=14.70 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=8.0
Q ss_pred CCHHHHHCCCHHHHHH
Q ss_conf 2101320000688878
Q gi|254781115|r 132 QGKVIDYVGGLNDLRN 147 (416)
Q Consensus 132 ~~~l~Dp~gG~~DL~~ 147 (416)
.|-++| |+..|+..
T Consensus 113 ~G~Vid--G~vRD~~e 126 (240)
T 2c5q_A 113 NGTVVF--GRIRDVDE 126 (240)
T ss_dssp CEEEEE--EEECCHHH
T ss_pred CEEEEE--CCCCCHHH
T ss_conf 689751--03378889
Done!