HHSEARCH alignment of GI: 254781115 and SCOP domain: d1ou5a2

Alignment

Probab=100.00  E-value=2.5e-41  Score=293.10  Aligned_cols=137  Identities=40%  Similarity=0.636  Sum_probs=129.1

Q ss_pred             CHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEC-CCCCCCEEEEEECCEEEE
Q ss_conf             9889999999997898599970699888778898608999808989999999876995621-343144699998998886
Q gi|254781115|r   12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTIKIICRKKYFD   90 (416)
Q Consensus        12 ~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~~~~d   90 (416)
                      .+.++.|++.+++.|+++|+|||||||+|||++|+|||++|++.|.++.+.|...+...+. .+..|||+++..++..+|
T Consensus        15 ~~~l~~i~~~~~~~g~~~ylVGG~VRD~Llg~~~~DiDi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (152)
T d1ou5a2          15 TEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFE   94 (152)
T ss_dssp             CTTHHHHHHHHHHTTCCEEEESTTTHHHHHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTTTCEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHCCCCCEEEECCEEEC
T ss_conf             79999999999988998999858999998599876743002337788999998718823431101023211342336410


Q ss_pred             EECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHH
Q ss_conf             4213446676887432233201332104478003002000321013200006888787
Q gi|254781115|r   91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR  148 (416)
Q Consensus        91 i~~~R~e~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~  148 (416)
                      ++++|+|+|++++++++++.++|++||.|||||||||||+++|+|+|||||++||++|
T Consensus        95 i~~~R~d~~~~~~~~~v~~~~~i~~Dl~RRDFTINAma~~~~g~iiDp~~G~~DL~~k  152 (152)
T d1ou5a2          95 ITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNK  152 (152)
T ss_dssp             EEECCS------------SSCCSSCCGGGSSBGGGSCEECSSCBEECSSSHHHHTTTT
T ss_pred             CCEEEEEEECCCCCCCEEECCCCCCCCCCEECEECEEEECCCCCEEECCCCHHHHHCC
T ss_conf             1203556505997564041245302303241330215477999888589999999648

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]