HHSEARCH alignment of GI: 254781115 and SCOP domain: d1r89a2

Alignment
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=94.88  E-value=0.084  Score=28.59  Aligned_cols=79  Identities=9%  Similarity=0.005  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEE----CCHHHHHHH----HHHCCCCEECCCCCCCEEEEEECC
Q ss_conf             999999999789859997069988877889860899980----898999999----987699562134314469999899
Q gi|254781115|r   15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRI----FSKTRYKVIPTSISYGTIKIICRK   86 (416)
Q Consensus        15 ~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~gt~~~~~~~   86 (416)
                      ...+.+.+.+.+.++++||-+-|+-.|. +.+|+|+.+-    ..++.+...    +..........+.+|-++++.++|
T Consensus        28 ~~~l~~~l~~~~~e~~~~GS~ar~T~l~-~~~DiDifv~~~~~~~~e~l~~~~~~~~~~~~~~~~~~y~~hpyv~~~~~g  106 (142)
T d1r89a2          28 EEELRRRLDELGVEYVFVGSYARNTWLK-GSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRYAEHPYVHGVVKG  106 (142)
T ss_dssp             HHHHHHHHHHHTCCEEEEHHHHHTCCCT-TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHSSSEEEEESSSEEEEEEETT
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECC
T ss_conf             8888877642485179961402554579-965404899947988989999999999998623211766559899999877


Q ss_pred             EEEEEECC
Q ss_conf             88864213
Q gi|254781115|r   87 KYFDITTL   94 (416)
Q Consensus        87 ~~~di~~~   94 (416)
                      ..+||..+
T Consensus       107 ~~vDvVP~  114 (142)
T d1r89a2         107 VEVDVVPC  114 (142)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
T ss_conf             69999977


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Archaeal tRNA CCA-adding enzyme catalytic domain
domain: tRNA nucleotidyltransferase, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]