Query         gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 416
No_of_seqs    186 out of 2831
Neff          9.2 
Searched_HMMs 13730
Date          Wed Jun  1 11:49:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781115.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1miwa1 a.173.1.1 (A:140-404)  100.0 2.8E-45       0  320.0  13.4  259  149-414     1-260 (265)
  2 d1ou5a2 d.218.1.4 (A:-1-150) t 100.0 2.5E-41 1.4E-45  293.1   7.2  137   12-148    15-152 (152)
  3 d1vfga2 d.218.1.4 (A:1-136) Po 100.0 8.8E-40 6.3E-44  282.7  11.6  131   18-148     2-136 (136)
  4 d1miwa2 d.218.1.4 (A:1-139) tR 100.0 3.6E-38 2.6E-42  271.9  11.3  131   14-148     7-139 (139)
  5 d1ou5a1 a.173.1.1 (A:151-354)  100.0   8E-30 5.9E-34  216.1   7.0  149  149-302     1-151 (204)
  6 d1vfga1 a.173.1.1 (A:137-351)   99.9 7.6E-28 5.5E-32  202.9   7.4  150  149-301     1-160 (215)
  7 d2fcla1 d.218.1.11 (A:1-157) H  96.0   0.017 1.2E-06   33.3   7.8   79   14-93      9-94  (157)
  8 d1r89a2 d.218.1.7 (A:1-142) tR  94.9   0.084 6.1E-06   28.6   8.1   79   15-94     28-114 (142)
  9 d1no5a_ d.218.1.5 (A:) Hypothe  71.8     2.6 0.00019   18.6   4.4   48   13-62      7-60  (100)
 10 d1wota_ d.218.1.5 (A:) Unnamed  56.8     2.9 0.00021   18.3   2.3   38   16-55     14-52  (98)
 11 d1ylqa1 d.218.1.5 (A:1-90) Put  37.0     9.8 0.00071   14.8   4.1   34   16-53      2-40  (90)
 12 d1vi4a_ c.8.7.1 (A:) Hypotheti  34.5     3.8 0.00028   17.5  -0.0   15   34-48     46-60  (162)
 13 d1j3la_ c.8.7.1 (A:) Demethylm  32.3     4.4 0.00032   17.1  -0.0   15   34-48     45-59  (164)
 14 d3djba1 a.211.1.1 (A:2-214) Un  32.3      12 0.00085   14.3   3.9   46  260-305    46-102 (213)
 15 d2ez9a1 c.31.1.3 (A:183-365) P  31.3      12 0.00088   14.2   3.7   55    7-77     12-66  (183)
 16 d2fmpa3 d.218.1.2 (A:149-335)   31.0      12 0.00089   14.1   5.9   41   24-68     22-75  (187)
 17 d1jmsa4 d.218.1.2 (A:303-510)   27.9      14   0.001   13.8   3.6   33   17-54     15-48  (208)
 18 d1nlna_ d.3.1.7 (A:) Human ade  25.2      13 0.00092   14.0   1.3   21  126-146    56-80  (203)
 19 d1q5xa_ c.8.7.1 (A:) Regulator  25.1       7 0.00051   15.7  -0.0   14   35-48     46-59  (160)
 20 d1nxja_ c.8.7.1 (A:) Hypotheti  23.5     6.2 0.00045   16.1  -0.6   15   34-48     48-62  (156)
 21 d1k0ia2 d.16.1.2 (A:174-275) p  21.7      17  0.0013   13.1   1.4   21  195-215    56-76  (102)

No 1  
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=2.8e-45  Score=319.99  Aligned_cols=259  Identities=17%  Similarity=0.177  Sum_probs=200.0

Q ss_pred             HHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf             77642764310010421003320122013643311110001233332102220577688788642110189999987530
Q gi|254781115|r  149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG  228 (416)
Q Consensus       149 ~ir~v~~~~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~  228 (416)
                      +||+||||.+||.|||||||||+||++||| |+||++|..+|+++++.|..||+||||+|+.||+.+++|..++..|.++
T Consensus         1 iiR~vg~p~~rf~EDpLRiLRa~RFa~rl~-f~i~~~t~~ai~~~~~~l~~vS~ERI~~El~kil~~~~~~~~l~~l~~~   79 (265)
T d1miwa1           1 IIRTVGEAEKRFREDALRMMRAVRFVSELG-FALAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAET   79 (265)
T ss_dssp             EECBSSCHHHHHHHCTHHHHHHHHHHHHHC-CEECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHS
T ss_pred             CEEECCCHHHHCCCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             964379889850523789999999999948-7836999999999899887669999999999999642468999999988


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             02334688701058578987786776317880167666520477685789988753034256777788887541143336
Q gi|254781115|r  229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL  308 (416)
Q Consensus       229 gll~~ifpel~~~~~~~l~~~~~~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~~~~  308 (416)
                      |+++ ++|++....  ...+.... ...........+|++++|+.++.....++.++++|++..+.+..+...+......
T Consensus        80 gl~~-~lp~l~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~s~~~~~~~~~~~~~~~~~~~~  155 (265)
T d1miwa1          80 GLNA-YLPGLAGKE--KQLRLAAA-YRWPWLAAREERWALLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRP  155 (265)
T ss_dssp             TTTT-SSTTCSSCH--HHHHHGGG-SCGGGCCSHHHHHHHHHHHHTCSCHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSG
T ss_pred             CHHH-HCCCCCCHH--HHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             8298-671644203--58888888-6400003167789999876117778887773278889999999999878877766


Q ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf             7246678998708024551698999864077760138999999987751288888988789996-589877799999999
Q gi|254781115|r  309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVH  387 (416)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~-~Gi~pGp~iG~iL~~  387 (416)
                      . ....+.+|..+.........+........ .......+...+........+.++|+|+|||+ +|++|||++|+++++
T Consensus       156 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~i~G~dL~~~~g~~pGp~iG~il~~  233 (265)
T d1miwa1         156 E-AWTNEQLFSAGLERALSVETVRAAFTGAP-PGPWHEKLRRRFASLPIKTKGELAVNGKDVIEWVGKPAGPWVKEALDA  233 (265)
T ss_dssp             G-GCCHHHHHHHHHHHHHHHHHHHHHHHCCC-SHHHHHHHHHHHTTCSCSSGGGCSSCHHHHHHHHTCCSSHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             7-78899887768888888999999986598-056799999999856365424468898999988099977799999999


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             999996388888989999999999874
Q gi|254781115|r  388 CKQEWINSSFQLSQEDLHHLLRKLIAS  414 (416)
Q Consensus       388 l~~~~i~~~~~n~~e~l~~~lk~l~~~  414 (416)
                      ++++|++|++.|++|++.+++++...+
T Consensus       234 l~~~~l~~~~~n~ke~l~~~l~~~~k~  260 (265)
T d1miwa1         234 IWRAVVNGEVENEKERIYAWLMERNRT  260 (265)
T ss_dssp             HHHHHHTTSSCSCHHHHHHHHHHHHTH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999997599999899999999986375


No 2  
>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=100.00  E-value=2.5e-41  Score=293.10  Aligned_cols=137  Identities=40%  Similarity=0.636  Sum_probs=129.1

Q ss_pred             CHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEC-CCCCCCEEEEEECCEEEE
Q ss_conf             9889999999997898599970699888778898608999808989999999876995621-343144699998998886
Q gi|254781115|r   12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTIKIICRKKYFD   90 (416)
Q Consensus        12 ~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~~~~d   90 (416)
                      .+.++.|++.+++.|+++|+|||||||+|||++|+|||++|++.|.++.+.|...+...+. .+..|||+++..++..+|
T Consensus        15 ~~~l~~i~~~~~~~g~~~ylVGG~VRD~Llg~~~~DiDi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (152)
T d1ou5a2          15 TEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFE   94 (152)
T ss_dssp             CTTHHHHHHHHHHTTCCEEEESTTTHHHHHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTTTCEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHCCCCCEEEECCEEEC
T ss_conf             79999999999988998999858999998599876743002337788999998718823431101023211342336410


Q ss_pred             EECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHH
Q ss_conf             4213446676887432233201332104478003002000321013200006888787
Q gi|254781115|r   91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR  148 (416)
Q Consensus        91 i~~~R~e~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~  148 (416)
                      ++++|+|+|++++++++++.++|++||.|||||||||||+++|+|+|||||++||++|
T Consensus        95 i~~~R~d~~~~~~~~~v~~~~~i~~Dl~RRDFTINAma~~~~g~iiDp~~G~~DL~~k  152 (152)
T d1ou5a2          95 ITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNK  152 (152)
T ss_dssp             EEECCS------------SSCCSSCCGGGSSBGGGSCEECSSCBEECSSSHHHHTTTT
T ss_pred             CCEEEEEEECCCCCCCEEECCCCCCCCCCEECEECEEEECCCCCEEECCCCHHHHHCC
T ss_conf             1203556505997564041245302303241330215477999888589999999648


No 3  
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=8.8e-40  Score=282.75  Aligned_cols=131  Identities=27%  Similarity=0.380  Sum_probs=118.1

Q ss_pred             HHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEECCCCC
Q ss_conf             99999978985999706998887788986089998089899999998769956213431446999989988864213446
Q gi|254781115|r   18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD   97 (416)
Q Consensus        18 i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~~R~e   97 (416)
                      |.+.+++.|+++|+|||||||+|||++++||||+|++.|.++++.+.+.....+..+.+|||+++..++..+|++++|+|
T Consensus         2 I~~~~~~~G~~~ylVGG~VRD~llg~~~~DiDi~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~R~e   81 (136)
T d1vfga2           2 VGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRE   81 (136)
T ss_dssp             HHHHHHHTTCCEEEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSC
T ss_pred             HHHHHHHCCCEEEEECHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHEEHHCEEC
T ss_conf             56999976994999866999998499987711898511001034666514643223542132124411101000112101


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC----CHHHHHCCCHHHHHHH
Q ss_conf             67688743223320133210447800300200032----1013200006888787
Q gi|254781115|r   98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNR  148 (416)
Q Consensus        98 ~~~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~~----~~l~Dp~gG~~DL~~~  148 (416)
                      .|..+++.+.+++++|++||+|||||||||||+++    |+|+|||||++||++|
T Consensus        82 ~~~~~~~~~~~~~~~i~eDl~RRDFTiNAma~~~~~~~~g~liDp~gG~~DL~~k  136 (136)
T d1vfga2          82 TYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDK  136 (136)
T ss_dssp             C---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTT
T ss_pred             CCCCCCCCCEEEEEHHHHHHHHCCCCHHHEEECCCCCCCCEEEECCCCHHHHHCC
T ss_conf             3234345764663055666652462020102335767898798489999999648


No 4  
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=3.6e-38  Score=271.94  Aligned_cols=131  Identities=38%  Similarity=0.624  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCEEEEEEC
Q ss_conf             89999999997898599970699888778898608999808989999999876995621343144699998998886421
Q gi|254781115|r   14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITT   93 (416)
Q Consensus        14 ~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~di~~   93 (416)
                      ++..|++.++++|+++|+|||||||+|||++++|+||+|++.|+++++.+.    +...++..|||+++..++..+++++
T Consensus         7 ~~l~i~~~l~~~g~~~ylVGG~VRD~LLg~~~~DiDi~v~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   82 (139)
T d1miwa2           7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFP----KTIDVGSKHGTVVVVHKGKAYEVTT   82 (139)
T ss_dssp             HHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCS----SEEEEEGGGTEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCCEEEECCCHHHHHHHCC----CCCCCCCEEEEEEEEEECCEEEEEE
T ss_conf             999999999988997999838999998399999842872377588765412----1112674025899887052015789


Q ss_pred             CCCCC-CCCCCCC-CCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHH
Q ss_conf             34466-7688743-2233201332104478003002000321013200006888787
Q gi|254781115|r   94 LRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR  148 (416)
Q Consensus        94 ~R~e~-~~~~~~~-~~~~~~~~~eDl~RRDFTINAla~~~~~~l~Dp~gG~~DL~~~  148 (416)
                      +|+|. |.++++| .+.+..+|++||.|||||||||||+.+|+|+|||||++||++|
T Consensus        83 ~r~~~~~~~~~~~~~~~~~~~i~eDl~RRDFTINAma~~~~g~liDp~~G~~DL~~k  139 (139)
T d1miwa2          83 FKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDEYGTIIDPFGGREAIRRR  139 (139)
T ss_dssp             CEECC---------CCEECSCHHHHHHTSSBSGGGCEECTTCCEECTTCHHHHHHHT
T ss_pred             EEECCCCCCCCCCCEEEECCCHHHHHHCCCCCEEEEEECCCCCEEECCCCHHHHHCC
T ss_conf             860364211120222554575454664578516567897999888589999999649


No 5  
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=99.96  E-value=8e-30  Score=216.08  Aligned_cols=149  Identities=28%  Similarity=0.448  Sum_probs=126.3

Q ss_pred             HHHHCCCCCCHHHCCCCCEEEEEEEEECCC--CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             776427643100104210033201220136--433111100012333321022205776887886421101899999875
Q gi|254781115|r  149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY  226 (416)
Q Consensus       149 ~ir~v~~~~~rf~EDpLRiLRa~RFasrlg--~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~  226 (416)
                      .||+||||.+||.|||||||||+||+++||  .|.+|++|+.+|+++++.|..||+||||.|+.|||.+++|..++..|.
T Consensus         1 kvr~VGdp~~Rf~ED~LRILR~~RF~~~~~~~~f~id~~t~~ai~~~~~~L~~lS~ERI~~El~Kil~~~~~~~~l~~m~   80 (204)
T d1ou5a1           1 KVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIY   80 (204)
T ss_dssp             CCCBSSTTTTTSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred             CEEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             95476789985040289999999999997778898388999889987887156818778999999985137999999998


Q ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             3002334688701058578987786776317880167666520477685789988753034256777788887541
Q gi|254781115|r  227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN  302 (416)
Q Consensus       227 ~~gll~~ifpel~~~~~~~l~~~~~~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~~~~~  302 (416)
                      ++|++++|+|... .+...+....+..  ....+++++++++|++..+  .+..++.++++||++++.+..+.+..
T Consensus        81 ~~gil~~i~~~~~-~~l~~~~~~~~~~--~~~~~~~~~~La~L~~~~~--~~~~~~~rlklSn~e~~~~~fl~~~r  151 (204)
T d1ou5a1          81 DLDVAPYIGLPAN-ASLEEFDKVSKNV--DGFSPKPVTLLASLFKVQD--DVTKLDLRLKIAKEEKNLGLFIVKNR  151 (204)
T ss_dssp             HTTCGGGGTCCCC-SCCHHHHHHHHHH--TTSCCCHHHHHGGGCCSTT--TTHHHHHHHCCCTTHHHHHHHHTTTT
T ss_pred             HCCHHHHHCCHHH-HHHHHHHHHHHHH--HCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             8885988585667-4299999999987--3489778999999859806--79999999689999999999999829


No 6  
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
Probab=99.94  E-value=7.6e-28  Score=202.86  Aligned_cols=150  Identities=21%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             HHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHH--HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             77642764310010421003320122013643311110001233--3321022205776887886421101899999875
Q gi|254781115|r  149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK--AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY  226 (416)
Q Consensus       149 ~ir~v~~~~~rf~EDpLRiLRa~RFasrlg~f~id~~t~~ai~~--~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~  226 (416)
                      +||++|+  +||.|||||||||+||+|+|| |.||++|..+|++  +++.+.++|+||||+|+.||+.+++|..++..|.
T Consensus         1 vlR~l~~--~sF~EDPlRiLRa~RF~ar~g-f~i~~~T~~~i~~~~~~~~l~~ls~eRI~~E~~kil~~~~~~~~l~~l~   77 (215)
T d1vfga1           1 VIRVLHP--VSFIEDPVRILRALRFAGRLN-FKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYR   77 (215)
T ss_dssp             EECBSST--THHHHCTTHHHHHHHHHHHHT-CEECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             CEEECCC--CCCCCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             9313898--875561999999999999968-9988999999999887656578978899999999982506899999999


Q ss_pred             HCCCCCCCCCCCCCCCHH-----HHHHHHHH---HHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             300233468870105857-----89877867---7631788016766652047768578998875303425677778888
Q gi|254781115|r  227 NGGIFKEIFLDVQEISLD-----QLSQVIEA---EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF  298 (416)
Q Consensus       227 ~~gll~~ifpel~~~~~~-----~l~~~~~~---~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~rlkl~~~~~~~l~~~  298 (416)
                      ++|+++.+||++......     ........   .........+++++++++|+.+++....+++++++|++..+.+...
T Consensus        78 ~~~ll~~l~p~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~l~~~~~~~~~~~  157 (215)
T d1vfga1          78 KYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFM  157 (215)
T ss_dssp             HTTCHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHCSCCSSTTHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             82819997832010265788899999998899986043221239999999986058299998988459899999999999


Q ss_pred             HHH
Q ss_conf             754
Q gi|254781115|r  299 FNC  301 (416)
Q Consensus       299 ~~~  301 (416)
                      ...
T Consensus       158 ~~~  160 (215)
T d1vfga1         158 KFK  160 (215)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 7  
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]}
Probab=96.02  E-value=0.017  Score=33.29  Aligned_cols=79  Identities=24%  Similarity=0.181  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEHHHHHHHHCCC--CCCEEEEEEEC-CHHHHHHHHHHCCCCEECCCCC-C---CEEEEEECC
Q ss_conf             899999999978985999706998887788--98608999808-9899999998769956213431-4---469999899
Q gi|254781115|r   14 DLINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSIS-Y---GTIKIICRK   86 (416)
Q Consensus        14 ~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~--~~~DiD~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~---gt~~~~~~~   86 (416)
                      .+..+.+.|++.|.+-.+|||+.= .+-|.  .++||||+|.. +.+.+.+++...+......... +   +......++
T Consensus         9 ~l~~~~~~l~~~~i~~~i~Gg~A~-~~~G~~r~t~DiDi~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~g   87 (157)
T d2fcla1           9 VLRKIYDRLKNEKVNWVVTGSLSF-ALQGVPVEVHDIDIQTDEEGAYEIERIFSEFVSKKVRFSSTEKICSHFGELIIDG   87 (157)
T ss_dssp             HHHHHHHHHTTSSCCEEEEHHHHH-HHTTCCCCCCSEEEEECHHHHHHHHHHTGGGEEEEEEEEECSSEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHCCCCEEEEHHHHH-HHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             999999999877999998869999-9879999988635897445799999999982747877566221001248995099


Q ss_pred             EEEEEEC
Q ss_conf             8886421
Q gi|254781115|r   87 KYFDITT   93 (416)
Q Consensus        87 ~~~di~~   93 (416)
                      ..+|+.+
T Consensus        88 ~~idi~~   94 (157)
T d2fcla1          88 IKVEIMG   94 (157)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
T ss_conf             5899967


No 8  
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=94.88  E-value=0.084  Score=28.59  Aligned_cols=79  Identities=9%  Similarity=0.005  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEE----CCHHHHHHH----HHHCCCCEECCCCCCCEEEEEECC
Q ss_conf             999999999789859997069988877889860899980----898999999----987699562134314469999899
Q gi|254781115|r   15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRI----FSKTRYKVIPTSISYGTIKIICRK   86 (416)
Q Consensus        15 ~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~gt~~~~~~~   86 (416)
                      ...+.+.+.+.+.++++||-+-|+-.|. +.+|+|+.+-    ..++.+...    +..........+.+|-++++.++|
T Consensus        28 ~~~l~~~l~~~~~e~~~~GS~ar~T~l~-~~~DiDifv~~~~~~~~e~l~~~~~~~~~~~~~~~~~~y~~hpyv~~~~~g  106 (142)
T d1r89a2          28 EEELRRRLDELGVEYVFVGSYARNTWLK-GSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRYAEHPYVHGVVKG  106 (142)
T ss_dssp             HHHHHHHHHHHTCCEEEEHHHHHTCCCT-TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHSSSEEEEESSSEEEEEEETT
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECC
T ss_conf             8888877642485179961402554579-965404899947988989999999999998623211766559899999877


Q ss_pred             EEEEEECC
Q ss_conf             88864213
Q gi|254781115|r   87 KYFDITTL   94 (416)
Q Consensus        87 ~~~di~~~   94 (416)
                      ..+||..+
T Consensus       107 ~~vDvVP~  114 (142)
T d1r89a2         107 VEVDVVPC  114 (142)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
T ss_conf             69999977


No 9  
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=71.78  E-value=2.6  Score=18.62  Aligned_cols=48  Identities=17%  Similarity=0.153  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHC--CCEEEEEHHHHHHHHCCCCCCEEEEEEEC----CHHHHHHH
Q ss_conf             8899999999978--98599970699888778898608999808----98999999
Q gi|254781115|r   13 SDLINILSLLNKG--EDKSCIVGGAVRDSLMNLSVQDIDIATTI----LPDRVMRI   62 (416)
Q Consensus        13 ~~~~~i~~~l~~~--g~~~~~VGG~VRD~ll~~~~~DiD~~~~~----~~~~~~~~   62 (416)
                      ..+..|.+.+.+.  ..++|+-|-++|..  .++-.|||++|..    +..+..++
T Consensus         7 e~l~~i~~il~~~~~~~~v~LFGS~arg~--~~~~SDiDl~I~~~~~~~~~~~~~l   60 (100)
T d1no5a_           7 EELAIVKTILQQLVPDYTVWAFGSRVKGK--AKKYSDLDLAIISEEPLDFLARDRL   60 (100)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEEGGGTTTC--CCTTCCEEEEEECSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCCEEEEEECCCCCHHHHHHH
T ss_conf             99999999999719995899989877898--6888881399981899999999999


No 10 
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=56.78  E-value=2.9  Score=18.25  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=27.9

Q ss_pred             HHHHHHHHHCC-CEEEEEHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             99999999789-85999706998887788986089998089
Q gi|254781115|r   16 INILSLLNKGE-DKSCIVGGAVRDSLMNLSVQDIDIATTIL   55 (416)
Q Consensus        16 ~~i~~~l~~~g-~~~~~VGG~VRD~ll~~~~~DiD~~~~~~   55 (416)
                      ..|...++++| ..+|+-|-.+|+-  ..+..|||++|...
T Consensus        14 ~~i~~i~~k~~v~~v~lFGS~arg~--~~~~SDIDi~V~~~   52 (98)
T d1wota_          14 EAVLSLCARHGAVRVRVFGSVARGE--AREDSDLDLLVAFE   52 (98)
T ss_dssp             HHHHHHHHHHTCSSCEECSHHHHTC--CCTTCCCEEEECCC
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCCEEEEEEC
T ss_conf             9999999982985899988861798--89999943899758


No 11 
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=37.04  E-value=9.8  Score=14.75  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             HHHHHHHHHCC--CEEEEEHHHHHHHHCCCC---CCEEEEEEE
Q ss_conf             99999999789--859997069988877889---860899980
Q gi|254781115|r   16 INILSLLNKGE--DKSCIVGGAVRDSLMNLS---VQDIDIATT   53 (416)
Q Consensus        16 ~~i~~~l~~~g--~~~~~VGG~VRD~ll~~~---~~DiD~~~~   53 (416)
                      +.|.+.+.+..  .++|+.|.++|    |..   ..|||++|-
T Consensus         2 ~~i~e~ik~~~~~~kViLFGS~Ar----G~~~~~~SDiDllVV   40 (90)
T d1ylqa1           2 KEIKEITKKDVQDAEIYLYGSVVE----GDYSIGLSDIDVAIV   40 (90)
T ss_dssp             HHHHHHHHHHCTTCEEEEESHHHH----CCSSSCCCSEEEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCC----CCCCCCCCCCEEEEE
T ss_conf             789999998789958999876203----898788886579999


No 12 
>d1vi4a_ c.8.7.1 (A:) Hypothetical protein VC2366 {Vibrio cholerae [TaxId: 666]}
Probab=34.49  E-value=3.8  Score=17.48  Aligned_cols=15  Identities=27%  Similarity=0.299  Sum_probs=6.2

Q ss_pred             HHHHHHHCCCCCCEE
Q ss_conf             699888778898608
Q gi|254781115|r   34 GAVRDSLMNLSVQDI   48 (416)
Q Consensus        34 G~VRD~ll~~~~~Di   48 (416)
                      ..++.+|-.-++.|+
T Consensus        46 ~~~~~~i~~~~~G~V   60 (162)
T d1vi4a_          46 SKVRDVLSQNGKGKV   60 (162)
T ss_dssp             HHHHHHHTSCCTTEE
T ss_pred             HHHHHHHHCCCCCCE
T ss_conf             999999962799989


No 13 
>d1j3la_ c.8.7.1 (A:) Demethylmenaquinone methyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=32.29  E-value=4.4  Score=17.06  Aligned_cols=15  Identities=20%  Similarity=0.235  Sum_probs=6.6

Q ss_pred             HHHHHHHCCCCCCEE
Q ss_conf             699888778898608
Q gi|254781115|r   34 GAVRDSLMNLSVQDI   48 (416)
Q Consensus        34 G~VRD~ll~~~~~Di   48 (416)
                      ..||.+|-.-++.|+
T Consensus        45 ~~v~~~l~~~~~G~V   59 (164)
T d1j3la_          45 ALVRKVLEEEGAGQV   59 (164)
T ss_dssp             HHHHHHHTSCCBTEE
T ss_pred             HHHHHHHHHCCCCCE
T ss_conf             899999972799978


No 14 
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]}
Probab=32.27  E-value=12  Score=14.25  Aligned_cols=46  Identities=7%  Similarity=0.057  Sum_probs=34.8

Q ss_pred             CCHHHHHHHHCCCCCH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             0167666520477685-----------789988753034256777788887541143
Q gi|254781115|r  260 IDSLLRFIVLISWQDK-----------KSILSMAKKFSLPREIRYFLISFFNCNFNQ  305 (416)
Q Consensus       260 ~~~~lrla~Ll~~~~~-----------~~~~~~~~rlkl~~~~~~~l~~~~~~~~~~  305 (416)
                      ...++.+++|+||.+.           ..+..++..+.+|...+..+...+..|...
T Consensus        46 D~~vv~~AAlLHDig~~k~~~~~~~~~~~a~~~L~~~g~~~~~i~~V~~~I~~hs~s  102 (213)
T d3djba1          46 NRFIIEMAALLHDVADEKLNESEEAGMKKVSDWLEELHVEEEESKHVLHIIANMSYK  102 (213)
T ss_dssp             CHHHHHHHHTTHHHHC--CCSSSTTTHHHHHHHHHHTCCCHHHHHHHHHHTTCCC--
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf             999999999997404311245222369999999988798999999999999983755


No 15 
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=31.32  E-value=12  Score=14.15  Aligned_cols=55  Identities=9%  Similarity=-0.003  Sum_probs=38.0

Q ss_pred             CHHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCC
Q ss_conf             52219988999999999789859997069988877889860899980898999999987699562134314
Q gi|254781115|r    7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY   77 (416)
Q Consensus         7 ~~~~~~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (416)
                      .|.-+...+.++.+.|.+...-+-+|||.||..                ..++.++..+.+..++.+....
T Consensus        12 ~p~pd~~~i~~~~~~L~~A~rPvii~G~G~~~a----------------~~~l~~lae~~~~Pv~tt~~~~   66 (183)
T d2ez9a1          12 LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKA----------------GKELEQLSKTLKIPLMSTYPAK   66 (183)
T ss_dssp             CCBCCHHHHHHHHHHHHHCSSEEEEECGGGTTC----------------HHHHHHHHHHHTCCEEECGGGT
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC----------------HHHHHHHHHCCCEEEEEECCCC
T ss_conf             999899999999999983799399983780635----------------4999987640433798621455


No 16 
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.99  E-value=12  Score=14.11  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=26.8

Q ss_pred             HCCCEEEEEHHHHHHHHCCCC-CCEEEEEEECC------------HHHHHHHHHHCCC
Q ss_conf             789859997069988877889-86089998089------------8999999987699
Q gi|254781115|r   24 KGEDKSCIVGGAVRDSLMNLS-VQDIDIATTIL------------PDRVMRIFSKTRY   68 (416)
Q Consensus        24 ~~g~~~~~VGG~VRD~ll~~~-~~DiD~~~~~~------------~~~~~~~~~~~~~   68 (416)
                      ..+.++-+||++=|    |++ +.||||++..+            -.++.+.|.+.++
T Consensus        22 ~~~~~v~i~GSyRR----gk~~~gDIDilIt~~~~~~~~~~~~~~l~~v~~~l~~~~~   75 (187)
T d2fmpa3          22 DSEYIATVCGSFRR----GAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHF   75 (187)
T ss_dssp             CTTCEEEECHHHHT----TCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEEECCC----CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99848999610245----7765577027996587630233215799999999987795


No 17 
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.93  E-value=14  Score=13.77  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             HHHHHHHHCCCEEEEEHHHHHHHHCCC-CCCEEEEEEEC
Q ss_conf             999999978985999706998887788-98608999808
Q gi|254781115|r   17 NILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTI   54 (416)
Q Consensus        17 ~i~~~l~~~g~~~~~VGG~VRD~ll~~-~~~DiD~~~~~   54 (416)
                      +.+..+. .|.++-+||++-|    |+ .+.|||+++..
T Consensus        15 ~~~~~~~-~~~~v~i~GSyRR----Gk~tsgDIDili~~   48 (208)
T d1jmsa4          15 EAVVTFL-PDALVTMTGGFRR----GKMTGHDVDFLITS   48 (208)
T ss_dssp             HHHHHHC-TTCEEEECHHHHT----TCSCBSSEEEEEEC
T ss_pred             HHHHHCC-CCCEEEEEECCCC----CCCCCCCEEEEEEC
T ss_conf             9998549-9968999620546----88756784389955


No 18 
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=25.23  E-value=13  Score=14.02  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=14.3

Q ss_pred             CEEECCCCH---HHHHCC-CHHHHH
Q ss_conf             020003210---132000-068887
Q gi|254781115|r  126 ALYADQQGK---VIDYVG-GLNDLR  146 (416)
Q Consensus       126 Ala~~~~~~---l~Dp~g-G~~DL~  146 (416)
                      |||+++...   ++|||| --..|+
T Consensus        56 A~Aw~P~s~t~Y~FDPfGfsd~~L~   80 (203)
T d1nlna_          56 AFAWNPRSKTCYLFEPFGFSDQRLK   80 (203)
T ss_dssp             EEEEETTTTEEEEECTTCCCHHHHH
T ss_pred             EEEECCCCCEEEEECCCCCCHHHHH
T ss_conf             7576487674888789888789999


No 19 
>d1q5xa_ c.8.7.1 (A:) Regulator of RNase E activity RraA (MenG) {Escherichia coli [TaxId: 562]}
Probab=25.07  E-value=7  Score=15.73  Aligned_cols=14  Identities=14%  Similarity=0.033  Sum_probs=5.5

Q ss_pred             HHHHHHCCCCCCEE
Q ss_conf             99888778898608
Q gi|254781115|r   35 AVRDSLMNLSVQDI   48 (416)
Q Consensus        35 ~VRD~ll~~~~~Di   48 (416)
                      .++++|-.-++.|+
T Consensus        46 ~~~~al~~~~~G~V   59 (160)
T d1q5xa_          46 LLYDLLEQNGRGRV   59 (160)
T ss_dssp             HHHHHHTSCCTTEE
T ss_pred             HHHHHHHCCCCCCE
T ss_conf             99999845699959


No 20 
>d1nxja_ c.8.7.1 (A:) Hypothetical protein Rv3853 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.52  E-value=6.2  Score=16.10  Aligned_cols=15  Identities=13%  Similarity=0.197  Sum_probs=8.8

Q ss_pred             HHHHHHHCCCCCCEE
Q ss_conf             699888778898608
Q gi|254781115|r   34 GAVRDSLMNLSVQDI   48 (416)
Q Consensus        34 G~VRD~ll~~~~~Di   48 (416)
                      +.|+.+|-..++.|+
T Consensus        48 ~~v~~~l~~~~~G~V   62 (156)
T d1nxja_          48 ALLKSVLSQPSAGGV   62 (156)
T ss_dssp             HHHHHHHHSCCSSCE
T ss_pred             HHHHHHHHCCCCCCE
T ss_conf             999999961599969


No 21 
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.68  E-value=17  Score=13.12  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=16.1

Q ss_pred             HHCCCCCHHHHHHHHHHHHCC
Q ss_conf             210222057768878864211
Q gi|254781115|r  195 KGLKILSSERIWSEINKLLEA  215 (416)
Q Consensus       195 ~~L~~iS~ERI~~El~KiL~~  215 (416)
                      +.+..=|-||||+||.+=|..
T Consensus        56 d~~e~WsDdriW~EL~~Rl~~   76 (102)
T d1k0ia2          56 EKVEDWSDERFWTELKARLPS   76 (102)
T ss_dssp             CCGGGCCHHHHHHHHHHTSCH
T ss_pred             CCCCCCCHHHHHHHHHHHCCC
T ss_conf             980229788999999975183


Done!