BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] (416 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040792|gb|ACT57588.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/416 (100%), Positives = 416/416 (100%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM Sbjct: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR Sbjct: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK Sbjct: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE Sbjct: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN Sbjct: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK Sbjct: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ Sbjct: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 >gi|315122580|ref|YP_004063069.1| poly(A) polymerase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495982|gb|ADR52581.1| poly(A) polymerase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 421 Score = 631 bits (1627), Expect = e-179, Method: Compositional matrix adjust. Identities = 306/416 (73%), Positives = 364/416 (87%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 MVSI QHKWF D DLI+ILSLLN+G+DKSCIVGGAVR+SLMNLSVQDIDIATTILP+ +M Sbjct: 1 MVSIAQHKWFCDPDLIHILSLLNQGKDKSCIVGGAVRNSLMNLSVQDIDIATTILPEVIM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 +IFS+T YKVIPT ISYGT+ II KK FDITTLRSDLITDGR+AKVVFT DWKADSLRR Sbjct: 61 KIFSQTSYKVIPTGISYGTVTIIKNKKSFDITTLRSDLITDGRHAKVVFTHDWKADSLRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYADQ G+VIDYVGGLNDL+NRTIKFIG+AHHRILEDYLRILRFFRFFAHYG+ Sbjct: 121 DFTINALYADQAGRVIDYVGGLNDLKNRTIKFIGNAHHRILEDYLRILRFFRFFAHYGQH 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +ID DGL ASI+AK GLKILSSERIW EI K+LEAKNPL+AI++M+NGGIFKEIFL+VQ+ Sbjct: 181 DIDPDGLAASIQAKAGLKILSSERIWLEIKKILEAKNPLHAIMYMHNGGIFKEIFLNVQD 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 S+DQLSQVIE E+VF W+ID LLRFIVLI ++K+SI+S+AKK SLPREI+YFL++ Sbjct: 241 SSIDQLSQVIEGEKVFGWEIDPLLRFIVLIPLREKQSIISIAKKLSLPREIKYFLLACIG 300 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 N ++ +SI E+K+ FYLYG ++++ KLKIFL+L+Y NL ++ C I Q++ DI HW K Sbjct: 301 FNIEREKISIQEMKRFFYLYGREIVVIKLKIFLSLNYKNLDREEICHIRQIILDIEHWIK 360 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PLFPL GDDV+KYGIPPGKK+GNIL +C++EWI SSF+LS EDL HLL+K+I S+ Sbjct: 361 PLFPLRGDDVLKYGIPPGKKIGNILSYCEKEWIKSSFKLSYEDLLHLLQKVIKFSR 416 >gi|222086618|ref|YP_002545152.1| poly(A) polymerase protein [Agrobacterium radiobacter K84] gi|221724066|gb|ACM27222.1| poly(A) polymerase protein [Agrobacterium radiobacter K84] Length = 418 Score = 342 bits (876), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 172/419 (41%), Positives = 247/419 (58%), Gaps = 6/419 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ WF D L +LSLLN D+ +VGGAVR+SL+ L V DIDIATT+LP+ V+ Sbjct: 1 MTSVAGQTWFKDEALQRVLSLLNAEGDEGRVVGGAVRNSLLGLPVADIDIATTLLPEAVI 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT I++GT+ ++ K F+ITTLR D+ TDGR A+V F+ DW+AD+ RR Sbjct: 61 ERATTAGIKAVPTGIAHGTVTLVIDGKPFEITTLRRDVETDGRRAQVAFSNDWQADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYA G+VID VGGL DL R I+FIGDA RI ED+LRILRFFRFFA+YG Sbjct: 121 DLTINALYASDNGEVIDMVGGLADLERRNIRFIGDAATRIAEDHLRILRFFRFFAYYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL A A+ + LS+ER+WSE+ KLL AK+P A++ M GI E+ + ++ Sbjct: 181 RPDADGLRACAAARSKIASLSAERVWSEMKKLLAAKDPGRALLWMRQVGILTEVLPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I EQ W D LLR ++ D + +A++ L + +L + N Sbjct: 241 WGIDAIPALIATEQALGWTSDPLLRLAAIVP-PDAARLAKLAERLRLSKAEAAYLQGWAN 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 + +S +L Y Y + A+LK+ LA+ T + ++L Sbjct: 300 APGIKDDMSEVVFDRLLYRYDTPGVAARLKLALAVARGKAEGDFEEMARTARLGKLLERT 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 WKKP FP++G D + G+ G +VG IL +Q+W++ +F + + L L++LI S Sbjct: 360 AGWKKPAFPVSGADALAAGVSAGPRVGEILGKLEQQWLDGNFAMDRAALLARLKELIES 418 >gi|15966115|ref|NP_386468.1| hypothetical protein SMc02700 [Sinorhizobium meliloti 1021] gi|307305670|ref|ZP_07585417.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti BL225C] gi|307317673|ref|ZP_07597112.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti AK83] gi|15075385|emb|CAC46941.1| tRNA-nucleotidyltransferase/poly(A) polymerase [Sinorhizobium meliloti 1021] gi|306896831|gb|EFN27578.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti AK83] gi|306902373|gb|EFN32969.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti BL225C] Length = 419 Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 164/421 (38%), Positives = 242/421 (57%), Gaps = 8/421 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M SIV +WF L I LLN + +VGGA+R+SLM L D+D+ATT P+ V Sbjct: 1 MTSIVAERWFQAPHLRRIFDLLNADGGEVRVVGGAIRNSLMGLPAGDVDLATTWRPEEVT 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GT+ ++ ++ITTLR D+ TDGR A+V F DWKAD+ RR Sbjct: 61 ERAGGAGIKAVPTGIDHGTVTLVIEGVPYEITTLRRDVATDGRRAEVAFGTDWKADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYA G++ID+VGGL D+ RT++FIG A R+ EDYLRILRFFRFFAHYG Sbjct: 121 DFTINALYAGVDGEIIDHVGGLGDIETRTVRFIGSAAERVAEDYLRILRFFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A +A+ L LS+ER+W+E KLL A +P A++ M G+ EI + ++ Sbjct: 181 RPDAEGLRACAQARAKLATLSAERVWTETKKLLSADDPGRALLWMRQAGVLSEILPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I AE+ F W+ D LLR ++ D + +M K+ L + +L F Sbjct: 241 WGIDAIPALIAAEKSFSWRADPLLRLAAIVP-PDAARLEAMTKRLRLSKAESAYLDRFAE 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL------QVLSD 354 TL+ +++ Y +G + ++ +L++ LA D F+ ++L+ Sbjct: 300 APEIAATLADAALERQLYRHGTEGIVVRLRLALA-SARRKAETDPAFLADSASFHRLLAR 358 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 W++P+FPL G DV+K GIP G KVG +L + W+ +F + + L L ++ S Sbjct: 359 AEKWQRPVFPLNGADVLKLGIPAGPKVGEVLAELEAFWVERNFSVERATLVARLESMVRS 418 Query: 415 S 415 Sbjct: 419 G 419 >gi|110634525|ref|YP_674733.1| polynucleotide adenylyltransferase region [Mesorhizobium sp. BNC1] gi|110285509|gb|ABG63568.1| Polynucleotide adenylyltransferase region [Chelativorans sp. BNC1] Length = 409 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 167/409 (40%), Positives = 245/409 (59%), Gaps = 6/409 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +I W L +L +LN+G +++ I GGAVR++L+ +V DIDIATT LPD + Sbjct: 1 MTTIAGAPWLDQQGLQPLLEILNEGGEEARIAGGAVRNALLGEAVTDIDIATTNLPDETI 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R +KV+PT +GTI +I + +++TTLR+D+ T GR+A+VVF RDWKAD+ RR Sbjct: 61 RRAKAAGFKVVPTGYEHGTITVIAKGTPYEVTTLRADVETFGRHARVVFGRDWKADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYA+ G+V+D VGGL DL++RT++FIG+ RI EDYLRILRFFRFFA YG Sbjct: 121 DFTINALYAEPGGRVVDLVGGLADLQSRTLRFIGEPEKRIREDYLRILRFFRFFAWYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A + K L LS ERIW E+ KLL A +P A++ M G+ ++ + ++ Sbjct: 181 RPDAEGLKACARLKDRLSGLSVERIWMELKKLLAAPDPSRALLWMRQTGVLTQVLPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + ++E E+ W ++ LLR ++ D + I +A + L + L+S+ Sbjct: 241 WGIDAIHSLVETERALGWPVEPLLRLASIVP-PDPERIEKLAARLRLSKAEGAALVSWAE 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI----LQVLSDII 356 + +L E KL Y M +L++ LA D I Q L DI Sbjct: 300 SSQPDPSLKEGEFLKLLYRSEAGGMAWRLRLGLASARARAVESDKALIEAAGYQRLLDIT 359 Query: 357 -HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 W+KP+FP+ G D+++ G PGK++G L +++WI S F LS+EDL Sbjct: 360 ARWEKPVFPVRGRDLLERGFKPGKELGAKLAELEEKWIASGFSLSREDL 408 >gi|227822872|ref|YP_002826844.1| polyA polymerase family protein [Sinorhizobium fredii NGR234] gi|227341873|gb|ACP26091.1| polyA polymerase family protein [Sinorhizobium fredii NGR234] Length = 419 Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 161/410 (39%), Positives = 243/410 (59%), Gaps = 8/410 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M SI WF L + LLN + +VGGAVR+SL+ L D+D+ATT P+ V+ Sbjct: 1 MTSIAAEPWFQAPSLGRVFELLNADGGEVRVVGGAVRNSLLGLPAGDVDLATTWRPEDVV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 KV+PT I +GT+ ++ +++TTLR D+ TDGR A+V F DWKAD+ RR Sbjct: 61 ERAKSAGIKVVPTGIDHGTVTLVIGGIPYEVTTLRRDVATDGRRAEVAFGTDWKADAGRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYAD G++ DYVGGL D+ +RT++FIG A R+ EDYLRILR+FRFFAHYG Sbjct: 121 DFTINALYADANGEIFDYVGGLPDIESRTLRFIGSAAERVAEDYLRILRYFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A +A+ L LS+ER+W E+ KLL A++P A++ M G+ E+ + ++ Sbjct: 181 RPDAEGLRACAQARAKLATLSAERVWGEMKKLLAAEDPGRALLWMRQAGVLGEVLPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I AE++F W + LLR ++ D + + MA + L + FL+ F Sbjct: 241 WGIDAIPGLIAAEKIFFWVPEPLLRLAAIVP-PDAERLERMAARLRLSKAEAAFLVRFAE 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ------VLSD 354 TL+ + + Y G + ++A+LK+ LA + D ++ + +LS Sbjct: 300 APAIAATLADAALDRELYRKGAEGIVARLKLSLA-SARRKSETDPAYLAETAAFQRLLSR 358 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 W++P+FPL+G DV+K G+P G KVG +L + WI+ +F + + L Sbjct: 359 AERWQRPVFPLSGADVLKAGVPAGPKVGELLTELENFWIDRNFSIDRATL 408 >gi|116253238|ref|YP_769076.1| poly(A) polymerase [Rhizobium leguminosarum bv. viciae 3841] gi|115257886|emb|CAK08984.1| putative poly(A) polymerase [Rhizobium leguminosarum bv. viciae 3841] Length = 417 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 161/402 (40%), Positives = 230/402 (57%), Gaps = 6/402 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M I WF D L IL+LL+ + +VGGAVR+SLM L V DIDIATT+ P+ VM Sbjct: 1 MTGIADQAWFRDPALGRILALLSADGGEGRVVGGAVRNSLMGLPVNDIDIATTLRPETVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT + +GT+ ++ K F++TTLR+D+ TDGR AKV F+ DWKAD+ RR Sbjct: 61 ERAEAAGIKAVPTGLDHGTVTLVIDGKPFEVTTLRTDVETDGRRAKVAFSTDWKADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYAD G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA+YG Sbjct: 121 DLTINALYADAGGEVVDLVGGLADIERRNIRFIGDAAMRIAEDHLRILRFFRFFAYYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A A+ L LS+ER+WSE+ KLL A +P A++ M + EI + + Sbjct: 181 RPDAEGLKACSAARSKLTSLSAERVWSELRKLLGAADPGRALLWMRQVAVLTEILPETER 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I E+ W D LLR ++ D + ++A + L L ++ Sbjct: 241 WGIDAIPSLITTEKALGWSPDPLLRLAAIVP-PDVARLEALAARLKLSNAEAATLKAWAM 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 +S ++L Y G + +LK+ LA+ + ++++L Sbjct: 300 AAPVNDDMSSAAFERLLYRNGAGGITTRLKLALAVARGKAESDFDEMARSARLIKLLDRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 +HWKKP FPL G DV+ GI G +VG +L + +W+ +F Sbjct: 360 MHWKKPQFPLNGGDVISAGIASGPRVGELLAGLENQWVEENF 401 >gi|114707044|ref|ZP_01439943.1| probable poly(A) polymerase [Fulvimarina pelagi HTCC2506] gi|114537594|gb|EAU40719.1| probable poly(A) polymerase [Fulvimarina pelagi HTCC2506] Length = 415 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 162/399 (40%), Positives = 236/399 (59%), Gaps = 3/399 (0%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 ++ W D L ++L++LN+GE+++ IVGG VR++L+ V DIDIATT LPD R Sbjct: 6 IEEDWLRDPLLQSVLAVLNEGEEEARIVGGPVRNTLLGQPVSDIDIATTCLPDEASRRIE 65 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +KV+PT I +GTI +I + F++TTLR DL TDGR+A+V F RDW+AD+ RRDFTI Sbjct: 66 SSGFKVVPTGIEHGTITVIANGRPFEVTTLREDLSTDGRHAEVKFGRDWEADAWRRDFTI 125 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NALYA G+++D VGGL D+ R ++FIGDA RI EDYLRILRF+RFFA YG D+ Sbjct: 126 NALYAKADGEIVDPVGGLADIEGRVLRFIGDAEARIKEDYLRILRFYRFFAWYGRGRPDA 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 G+ AS K K GL LS+ERIW E+ KLL A +P A++ M G+ + + + +D Sbjct: 186 AGIRASAKLKAGLAHLSAERIWMELKKLLGAPDPSRALLWMRQAGVLTAVLPESERWGID 245 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 + +I+ E F W D LLR + +I D I +A + L ++ R L+++ + Sbjct: 246 NIHPLIDTETQFGWSADPLLRLLAIIP-PDAARIGELAGRLKLSKKERDRLLAYADAENP 304 Query: 305 QKTLSIPEIKKLFYLYGDKVMIA-KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 S ++ Y +GD IA +LK+ L L Q + + L+ + P F Sbjct: 305 SAEESDGALRARLY-FGDPTAIADRLKLALTLARQKEDLQVSSRLTAQLAVASGFAPPDF 363 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 PL G+D++ G PG +G + K+ W F +S+E Sbjct: 364 PLNGEDMLAAGYSPGPDLGKAMQRMKRLWAEGGFVMSRE 402 >gi|241205753|ref|YP_002976849.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859643|gb|ACS57310.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 417 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 158/402 (39%), Positives = 228/402 (56%), Gaps = 6/402 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M I WF D L IL+LLN + +VGGAVR+SLM L V D+DIATT+ P+ VM Sbjct: 1 MTGIADQAWFRDPALGRILALLNADGGEGRVVGGAVRNSLMGLPVNDVDIATTLRPEPVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKV F+ DWK D+ RR Sbjct: 61 ERAAAAGIKAVPTGLEHGTVTLVIDGKPFEVTTLRTDVETDGRHAKVAFSTDWKGDAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYAD +G+V+D VGGL D+ I+FIGDA RI ED+LRILRFFRFFA+YG Sbjct: 121 DLTINALYADAKGEVVDLVGGLADIETHNIRFIGDAARRIAEDHLRILRFFRFFAYYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A A+ L LS+ER+WSE+ KLL A +P A++ M + EI + + Sbjct: 181 RPDAEGLKACSLARSKLTTLSAERVWSELRKLLGADDPGRALLWMRQVAVLTEILPESER 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I E+ W D LLR ++ D + ++A + L L ++ Sbjct: 241 WGIDAIPSLIATEKALGWTPDPLLRLAAIVP-PDAARMEALAARLKLSNAEAATLKAWAM 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 +S ++L Y + +LK+ LA+ + + ++L Sbjct: 300 AAPVNDDMSSAAFERLLYRNSTDGITTRLKLALAVARGKAESDFDEMARSARLNKLLDKA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 HWKKP FPL G DV+ GI G +VG +L + +W+ +F Sbjct: 360 THWKKPQFPLNGGDVISAGIASGPRVGELLAGLENQWVEENF 401 >gi|222149362|ref|YP_002550319.1| poly(A) polymerase [Agrobacterium vitis S4] gi|221736346|gb|ACM37309.1| poly(A) polymerase [Agrobacterium vitis S4] Length = 420 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 156/420 (37%), Positives = 241/420 (57%), Gaps = 6/420 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M ++ WF D+ L + +LLN + +VGGAVR+SL+ V DID+ATT++P V Sbjct: 1 MTTVADQPWFQDAALAKVFALLNADGGEVRVVGGAVRNSLLGEPVGDIDLATTLVPSEVT 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GT+ ++ K F++TTLR D+ T+GR+A+V F DW+ D+ RR Sbjct: 61 ARAEAAGIKAVPTGIEHGTVTLVIGGKPFEVTTLRRDVETNGRHAEVAFGTDWQVDAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYA G+VID VGGL DL T++FIGDA RI EDYLR+LRFFRFFA YG Sbjct: 121 DFTINALYATASGEVIDPVGGLADLETGTLRFIGDARLRIAEDYLRVLRFFRFFAWYGRG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL A A+ L LS+ER+WSE KLL AK+P A++ M G+ I + ++ Sbjct: 181 RPDADGLRACAAARDELHRLSAERVWSETKKLLSAKDPGRALLWMRQSGVLTAILPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I E W+ + LLR + ++ D + + +A++ L R FL F Sbjct: 241 WGIDAIPGLIATETALNWQREPLLRLVAMVP-NDPERMKGLAERLKLSRAEAEFLQRFAT 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-----LHYNNLTHQDTCFILQVLSDI 355 + ++ + +L Y + ++A+LK+ LA + + + ++L Sbjct: 300 APKIKDDMADLALDRLLYRHDKPGIVAQLKLSLASARAKAEGDTASMAASARWFRLLQRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 ++KP+FP+TG D + G+ PG ++G +L + W+ ++F S+E L L++ + S Sbjct: 360 QAFEKPVFPITGSDAIAAGLAPGPEIGRVLSTLEDSWVQANFTFSREKLLSRLKEAVTPS 419 >gi|209550368|ref|YP_002282285.1| polynucleotide adenylyltransferase region [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536124|gb|ACI56059.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 422 Score = 315 bits (807), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 159/407 (39%), Positives = 233/407 (57%), Gaps = 11/407 (2%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGED-----KSCIVGGAVRDSLMNLSVQDIDIATTIL 55 M + WF D L IL LLN ++ +VGGAVR+SLM+L V DIDIATT+ Sbjct: 1 MTGLADQAWFRDPALGRILELLNADGGADGGGEARVVGGAVRNSLMDLPVSDIDIATTLR 60 Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 P+ VM + K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKV F+ DWKA Sbjct: 61 PEAVMEKAAAAGIKAVPTGLQHGTVTLVVDGKPFEVTTLRTDVETDGRHAKVAFSTDWKA 120 Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D+ RRD T+NALYAD G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA Sbjct: 121 DAERRDLTMNALYADANGEVVDLVGGLADIERRNIRFIGDAAKRIAEDHLRILRFFRFFA 180 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +YG D++GL A A+ LK LS+ER+WSE+ KLL A +P A++ M + EI Sbjct: 181 YYGSGRPDAEGLKACSAARSKLKTLSAERVWSELRKLLSAADPGRALLWMRQVAVLTEIL 240 Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + + +D + ++ E+ W D LLR ++ D + ++A + L FL Sbjct: 241 PESERWGIDAIPSLVATEKALGWAPDPLLRLAAIVP-PDAARLEALAARLKLANAEAAFL 299 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQ 350 ++ +S ++L Y G + +LK+ L + + + + Sbjct: 300 KAWAMAAPVNDDMSSAAFERLLYRNGADGITTRLKLALGVARGKAEGDFDEMARSARLTK 359 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 +L +W+KP FPL G DV+ GIP G +VG +L + +W+ +F Sbjct: 360 LLDQAANWEKPQFPLNGGDVMSMGIPSGPRVGELLAGLENQWVEENF 406 >gi|325293611|ref|YP_004279475.1| tRNA nucleotidyltransferase [Agrobacterium sp. H13-3] gi|325061464|gb|ADY65155.1| tRNA nucleotidyltransferase [Agrobacterium sp. H13-3] Length = 418 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 157/417 (37%), Positives = 242/417 (58%), Gaps = 6/417 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ WF L I +LLN + IVGGAVR++LM V D+D+ATT+ PD V+ Sbjct: 1 MSSLAGRDWFEKPALKRIFALLNADGGEVRIVGGAVRNALMEQPVVDVDMATTLTPDVVV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GT+ ++ + F++TTLR D+ T+GR+A+V F DW+ D+ RR Sbjct: 61 ERAKAAGIKAVPTGIEHGTVTLVIDGEGFEVTTLRRDVETNGRHAQVAFGTDWQIDAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYAD++G++ID + GL D+ T++FIGDA RI EDYLRILRFFRFFAHYG Sbjct: 121 DLTINALYADEKGEIIDLIDGLPDIETGTVRFIGDAAMRISEDYLRILRFFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL AS +AK L LS+ER+WSE+ KLL A++P A++ M G+ EI + ++ Sbjct: 181 RPDADGLRASARAKDRLGTLSAERVWSELKKLLSARDPSRALLWMRQSGVLAEILPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + ++ EQ W +D +LR ++ D++ + ++A + L + +L + + Sbjct: 241 WGIDAIHGLVATEQALGWTVDPMLRLAAIVP-PDRERLTALAGRLRLSKAEAAYLAHWAS 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-----LHYNNLTHQDTCFILQVLSDI 355 + + +L Y G + +LK+ LA L Q + +L+ Sbjct: 300 APVIDPEMKETALDRLLYRQGVDGVKTRLKLALASARADLSGGEAAMQKVARLSTLLTRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + KP FPL+G DV+ G+ G KVG +L +++WI+ +F L + L L+ ++ Sbjct: 360 NKFHKPGFPLSGADVMAAGVESGPKVGEVLKSLEEKWIDVNFSLDRAALTARLKDML 416 >gi|159185123|ref|NP_355207.2| poly(A) polymerase [Agrobacterium tumefaciens str. C58] gi|159140394|gb|AAK87992.2| poly(A) polymerase [Agrobacterium tumefaciens str. C58] Length = 418 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 158/417 (37%), Positives = 248/417 (59%), Gaps = 6/417 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ WF L I +LLN + IVGGAVR++LM+L V D+D+ATT+ P+ V+ Sbjct: 1 MNSLAGQDWFEKPALKRIFALLNADGGEVRIVGGAVRNALMDLPVVDVDMATTVTPNVVV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GT+ ++ + F++TTLR D+ T+GR+A+V F DW+ D+ RR Sbjct: 61 ERAKAAGIKSVPTGIEHGTVTLVIDGEGFEVTTLRRDVETNGRHAQVAFGTDWQTDAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYA+++G++ID V GL D+ RT++FIGDA RI EDYLRILRFFRFFAHYG Sbjct: 121 DLTINALYANEKGEIIDLVDGLADVETRTVRFIGDAAMRISEDYLRILRFFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL AS +AK L LS+ER+WSE KL+ A++P A++ M G+ EI + ++ Sbjct: 181 RPDADGLRASARAKDKLGTLSAERVWSETKKLISARDPSRALLWMRQSGVLSEILPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + ++ EQ W D +LR ++ D++ + ++A + L + +L + + Sbjct: 241 WGIDAIHGLVATEQALGWAADPMLRLAAIVP-PDRERLAALAARLRLSKAEAAYLTHWAS 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-----ILQVLSDI 355 + + +L Y G + + +LK+ LA +L+ DT + +L+ Sbjct: 300 APAVDPEMKETALDRLLYRQGVEAVKTRLKLALASARADLSAGDTAMHKVARLSTLLTRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++KP FPL+G DV+ G+ G KVG +L +++WI+ +F L + L L+ ++ Sbjct: 360 EKFRKPGFPLSGADVMAAGVEAGPKVGEVLKSLEEKWIDVNFSLDRAALTARLKDML 416 >gi|150397472|ref|YP_001327939.1| polynucleotide adenylyltransferase region [Sinorhizobium medicae WSM419] gi|150028987|gb|ABR61104.1| Polynucleotide adenylyltransferase region [Sinorhizobium medicae WSM419] Length = 419 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 236/416 (56%), Gaps = 6/416 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M SI WF L I LLN + IVGGA+R+SLM L D+D+ATT P+ V+ Sbjct: 1 MTSIAAEPWFQAPQLRRIFDLLNADGGEVRIVGGAIRNSLMGLPAGDVDLATTWHPEDVI 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT I +GT+ ++ +++TTLR D+ TDGR A+V F DWKAD+ RR Sbjct: 61 QRARGAGIKSVPTGIDHGTVTLVIEGMPYEVTTLRRDVATDGRRAEVAFGADWKADAQRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALY + +G+V+D+VGGL+D+ RT++FIG A R+ EDYLRILRFFRFFAHYG Sbjct: 121 DFTINALYGNAEGEVLDHVGGLDDIATRTVRFIGSAAERVAEDYLRILRFFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A +A+ L LS+ER+W+E KLL A +P A++ M G+ E+ + ++ Sbjct: 181 RPDAEGLKACAQARTKLATLSAERVWTETKKLLSAVDPGRALLWMRQAGVLGEVLPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I AE+ F W D LLR ++ D + +MAK+ L + +L F Sbjct: 241 WGIDAIPALISAEKSFSWHPDHLLRLAAMVP-PDVDRLEAMAKRLRLSKAESAYLDRFAK 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMI-----AKLKIFLALHYNNLTHQDTCFILQVLSDI 355 L+ + + Y +G + +I A + ++ ++L+ Sbjct: 300 APAIAPALADAALDRQLYRHGSEGIIVRLKLALAAARRKAETDPAMLAESASFQRLLARA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 W++P+FPL+G DV++ GIP G +VG +L + WI +F + + L L L Sbjct: 360 DKWQRPVFPLSGADVLEAGIPAGPRVGEVLAELENLWIERNFSVERAKLVARLETL 415 >gi|13472434|ref|NP_104001.1| poly(A) polymerase [Mesorhizobium loti MAFF303099] gi|14023180|dbj|BAB49787.1| probable poly(A) polymerase [Mesorhizobium loti MAFF303099] Length = 420 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 154/398 (38%), Positives = 235/398 (59%), Gaps = 8/398 (2%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W D L +L+ L +G +++ I GGAVR++LM V D+DIATT LP ++R Sbjct: 8 RANWLADKHLQRLLAALAEGSEEARIAGGAVRNTLMGQPVADVDIATTCLPQEIIRRAEA 67 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT I +GT+ ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RRDFTIN Sbjct: 68 EGFKPVPTGIEHGTVTVVAGGKPYEITTLRADVETDGRRAKVSFGRDWKLDAERRDFTIN 127 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALYA+ G+V+D VGG+ D+ R ++FIGDA RI EDYLRILRFFRFFA YGE D++ Sbjct: 128 ALYAEADGRVVDLVGGIADIEARRLRFIGDAEARIREDYLRILRFFRFFAWYGEGRPDAE 187 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K+GL LS+ERIW+E+ KLL A +P A++ M G+ + ++ +D Sbjct: 188 GLKACARLKEGLAQLSAERIWAELKKLLSASDPSRALLWMRQAGVLSAALPESEKWGIDA 247 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + + +AE+ W D +LR ++ D + ++A++ L + + Sbjct: 248 IHGLTKAEKDLGWAADPMLRLEAIVP-PDAARMKTLAERLRFSTAESDRLRHWALATAVE 306 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFL------ALHYNNLTHQDTCFILQVLSDIIHWK 359 ++ E+ K Y + ++ +L++ L A+ NN + F ++L+ + W+ Sbjct: 307 PKVTEAELAKRLYRGDRQGLVDRLRLSLAGARVRAVEDNNALLEAGGFS-RLLAFALKWE 365 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 KP+FPL G D+ G PG K+G IL + + EWI + F Sbjct: 366 KPVFPLKGADLTALGATPGPKLGEILNNLETEWIEAGF 403 >gi|319781858|ref|YP_004141334.1| polynucleotide adenylyltransferase region [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167746|gb|ADV11284.1| Polynucleotide adenylyltransferase region [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 421 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 160/409 (39%), Positives = 234/409 (57%), Gaps = 7/409 (1%) Query: 2 VSIV-QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 VSI + W D L +L L +G +++ + GGAVR++LM+ V DIDIATT LP+ + Sbjct: 3 VSIAGRADWLTDKHLQRLLFALAEGGEEARVAGGAVRNTLMDQPVADIDIATTCLPEETL 62 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R R+K +PT I +GTI ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RR Sbjct: 63 RRAEAERFKAVPTGIEHGTITVVAGGKPYEITTLRADIETDGRRAKVSFGRDWKLDAERR 122 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYA+ GKV+D VGG+ D+ R ++FIGD RI EDYLRILRFFRFFA YG+ Sbjct: 123 DFTINALYAEADGKVVDLVGGIADIEARRLRFIGDPEARIREDYLRILRFFRFFAWYGDG 182 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A + K+GL LSSERIWSE+ KLL A +P A++ M G+ + ++ Sbjct: 183 RPDAEGLKACARLKEGLAQLSSERIWSELKKLLSAPDPSRALLWMRQAGVLTAALPESEK 242 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + + +A + W D LLR ++ D + S+A++ L L + Sbjct: 243 WGIDAIHGLAKAGKDLGWAPDPLLRLEAIVP-PDAARMKSLAERLKLSTAEADRLRHWAL 301 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDI 355 + + E+ K Y + + +L++ LA + + ++L Sbjct: 302 ATAVEPKTTEGELAKRLYRGDRQGFVDRLRLSLAAARMRAVEDNEALLEAGGFSRLLGFA 361 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 W+KPLFPL G D+ G PG K+G IL + + EW+ + F ++ L Sbjct: 362 TKWEKPLFPLKGADLTVLGATPGPKLGEILRNLEAEWVEAGFAPDRDAL 410 >gi|254719586|ref|ZP_05181397.1| CCA-adding enzyme [Brucella sp. 83/13] gi|265984594|ref|ZP_06097329.1| polynucleotide adenylyltransferase protein [Brucella sp. 83/13] gi|306837925|ref|ZP_07470785.1| polyA polymerase family protein [Brucella sp. NF 2653] gi|264663186|gb|EEZ33447.1| polynucleotide adenylyltransferase protein [Brucella sp. 83/13] gi|306407013|gb|EFM63232.1| polyA polymerase family protein [Brucella sp. NF 2653] Length = 423 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 154/408 (37%), Positives = 235/408 (57%), Gaps = 9/408 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + L + + LN+ ++ +VGGAVR++L+ V D+D+ TT LP+ +R+ S+ + Sbjct: 13 WLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLVTTHLPEETVRLASEAGF 72 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT + YGTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 73 KPVPTGMEYGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALY 132 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 133 VTADGTVIDQVGGLADIEMRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 192 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + Sbjct: 193 ASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHG 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ ++ W+ D LLR L+ D + + K+ + R L ++ + + L Sbjct: 253 LVRTQRDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVKPGL 311 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A D I ++L H+ P+F Sbjct: 312 SEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDAPVF 371 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG D++ GI G +G L + WI+S F L +E LLRKL Sbjct: 372 PVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSLDRE---ALLRKL 416 >gi|256369969|ref|YP_003107480.1| polyA polymerase family protein [Brucella microti CCM 4915] gi|256000132|gb|ACU48531.1| polyA polymerase family protein [Brucella microti CCM 4915] Length = 423 Score = 301 bits (772), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 154/408 (37%), Positives = 236/408 (57%), Gaps = 9/408 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + L + + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ + Sbjct: 13 WLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGF 72 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 73 KPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALY 132 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 133 VTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 192 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + Sbjct: 193 ASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHG 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ + W+ D LLR L+ D + + K+ + R L ++ + + L Sbjct: 253 LVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVKPGL 311 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A + D I ++L H+ P+F Sbjct: 312 SEQALKKAIYRGSKQALLDRIRLAYAAARHEAVGSDEAMIRAGGVARLLDAAEHYDAPVF 371 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG D++ GI G +G L + WI+S F L +E LLRKL Sbjct: 372 PITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDRE---ALLRKL 416 >gi|17986746|ref|NP_539380.1| poly(A) polymerase / tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23502417|ref|NP_698544.1| polyA polymerase family protein [Brucella suis 1330] gi|161619496|ref|YP_001593383.1| Poly-A polymerase/tRNA nucleotidyltransferase [Brucella canis ATCC 23365] gi|163843806|ref|YP_001628210.1| CCA-adding enzyme [Brucella suis ATCC 23445] gi|225627993|ref|ZP_03786029.1| CCA-adding enzyme [Brucella ceti str. Cudo] gi|225853031|ref|YP_002733264.1| CCA-adding protein [Brucella melitensis ATCC 23457] gi|254702274|ref|ZP_05164102.1| CCA-adding enzyme [Brucella suis bv. 5 str. 513] gi|254704806|ref|ZP_05166634.1| CCA-adding enzyme [Brucella suis bv. 3 str. 686] gi|254708220|ref|ZP_05170048.1| CCA-adding enzyme [Brucella pinnipedialis M163/99/10] gi|254710590|ref|ZP_05172401.1| CCA-adding enzyme [Brucella pinnipedialis B2/94] gi|254714773|ref|ZP_05176584.1| CCA-adding enzyme [Brucella ceti M644/93/1] gi|254717834|ref|ZP_05179645.1| CCA-adding enzyme [Brucella ceti M13/05/1] gi|256032084|ref|ZP_05445698.1| CCA-adding enzyme [Brucella pinnipedialis M292/94/1] gi|256045176|ref|ZP_05448075.1| CCA-adding enzyme [Brucella melitensis bv. 1 str. Rev.1] gi|256061606|ref|ZP_05451747.1| CCA-adding enzyme [Brucella neotomae 5K33] gi|256114127|ref|ZP_05454881.1| CCA-adding enzyme [Brucella melitensis bv. 3 str. Ether] gi|256160280|ref|ZP_05457974.1| CCA-adding enzyme [Brucella ceti M490/95/1] gi|256255485|ref|ZP_05461021.1| CCA-adding enzyme [Brucella ceti B1/94] gi|256263487|ref|ZP_05466019.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|260169219|ref|ZP_05756030.1| CCA-adding enzyme [Brucella sp. F5/99] gi|260565226|ref|ZP_05835710.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260565952|ref|ZP_05836422.1| polynucleotide adenylyltransferase [Brucella suis bv. 4 str. 40] gi|261219679|ref|ZP_05933960.1| polynucleotide adenylyltransferase protein [Brucella ceti M13/05/1] gi|261222691|ref|ZP_05936972.1| polynucleotide adenylyltransferase [Brucella ceti B1/94] gi|261315723|ref|ZP_05954920.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis M163/99/10] gi|261318161|ref|ZP_05957358.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis B2/94] gi|261322568|ref|ZP_05961765.1| polynucleotide adenylyltransferase protein [Brucella ceti M644/93/1] gi|261325612|ref|ZP_05964809.1| polynucleotide adenylyltransferase [Brucella neotomae 5K33] gi|261752841|ref|ZP_05996550.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 5 str. 513] gi|261755499|ref|ZP_05999208.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 3 str. 686] gi|261758730|ref|ZP_06002439.1| polynucleotide adenylyltransferase [Brucella sp. F5/99] gi|265989192|ref|ZP_06101749.1| polynucleotide adenylyltransferase [Brucella pinnipedialis M292/94/1] gi|265991606|ref|ZP_06104163.1| polynucleotide adenylyltransferase protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995444|ref|ZP_06108001.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998655|ref|ZP_06111212.1| polynucleotide adenylyltransferase protein [Brucella ceti M490/95/1] gi|294852871|ref|ZP_06793544.1| poly(A) polymerase [Brucella sp. NVSL 07-0026] gi|17982373|gb|AAL51644.1| poly(a) polymerase / tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23348404|gb|AAN30459.1| polyA polymerase family protein [Brucella suis 1330] gi|161336307|gb|ABX62612.1| Poly-A polymerase/tRNA nucleotidyltransferase [Brucella canis ATCC 23365] gi|163674529|gb|ABY38640.1| CCA-adding enzyme [Brucella suis ATCC 23445] gi|225617156|gb|EEH14202.1| CCA-adding enzyme [Brucella ceti str. Cudo] gi|225641396|gb|ACO01310.1| CCA-adding enzyme [Brucella melitensis ATCC 23457] gi|260151294|gb|EEW86388.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155470|gb|EEW90550.1| polynucleotide adenylyltransferase [Brucella suis bv. 4 str. 40] gi|260921275|gb|EEX87928.1| polynucleotide adenylyltransferase [Brucella ceti B1/94] gi|260924768|gb|EEX91336.1| polynucleotide adenylyltransferase protein [Brucella ceti M13/05/1] gi|261295258|gb|EEX98754.1| polynucleotide adenylyltransferase protein [Brucella ceti M644/93/1] gi|261297384|gb|EEY00881.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis B2/94] gi|261301592|gb|EEY05089.1| polynucleotide adenylyltransferase [Brucella neotomae 5K33] gi|261304749|gb|EEY08246.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis M163/99/10] gi|261738714|gb|EEY26710.1| polynucleotide adenylyltransferase [Brucella sp. F5/99] gi|261742594|gb|EEY30520.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 5 str. 513] gi|261745252|gb|EEY33178.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 3 str. 686] gi|262553279|gb|EEZ09113.1| polynucleotide adenylyltransferase protein [Brucella ceti M490/95/1] gi|262766557|gb|EEZ12346.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002390|gb|EEZ14965.1| polynucleotide adenylyltransferase protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093511|gb|EEZ17545.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661389|gb|EEZ31650.1| polynucleotide adenylyltransferase [Brucella pinnipedialis M292/94/1] gi|294821460|gb|EFG38459.1| poly(A) polymerase [Brucella sp. NVSL 07-0026] gi|326409573|gb|ADZ66638.1| CCA-adding protein [Brucella melitensis M28] gi|326539277|gb|ADZ87492.1| CCA-adding enzyme [Brucella melitensis M5-90] Length = 423 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 154/408 (37%), Positives = 235/408 (57%), Gaps = 9/408 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + L + + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ + Sbjct: 13 WLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGF 72 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 73 KPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALY 132 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 133 VTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 192 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + Sbjct: 193 ASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHG 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ + W+ D LLR L+ D + + K+ + R L ++ + + L Sbjct: 253 LVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVKPGL 311 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A D I ++L H+ P+F Sbjct: 312 SEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDAPVF 371 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG D++ GI G +G L + WI+S F L +E LLRKL Sbjct: 372 PITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDRE---ALLRKL 416 >gi|121601737|ref|YP_989284.1| tRNA-nucleotidyltransferase [Bartonella bacilliformis KC583] gi|120613914|gb|ABM44515.1| tRNA-nucleotidyltransferase [Bartonella bacilliformis KC583] Length = 417 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 156/404 (38%), Positives = 236/404 (58%), Gaps = 6/404 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W ++ +L +L+ G++++ +VGGAVR+ L+ + DIDIATT LP +V++ + Sbjct: 9 QADWLQHKNIQTLLRILSLGDEEARVVGGAVRNQLLGQPISDIDIATTCLPQQVIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT I +GT+ ++ +++TTLRSD+ TDGRYAKV F RDWK D+ RRDFTIN Sbjct: 69 AGFKAVPTGIDFGTVTVVSESCSYEVTTLRSDVETDGRYAKVAFGRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D G++ D VGGL+D+ +RTI+FIG A RI EDYLRILRFFRFFA YG D+ Sbjct: 129 ALYCDATGQLYDLVGGLSDIASRTIRFIGVAEQRICEDYLRILRFFRFFAWYGAGRPDAQ 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL LSSER+W EI KLL A +P A++ M GI IF + ++ +D Sbjct: 189 GLKACVALKHGLHKLSSERVWEEIKKLLAASDPTRALLWMRQSGILTLIFPETEKWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +++ E V WK D LLR L+ D + + +A++ + + L + Sbjct: 249 IHSLVKTEHVLGWKEDPLLRLQSLLP-PDSERLQDIARRLRFSNKEKTRLREWAELESIS 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY-----NNLTHQDTCFILQVLSDIIHWKK 360 + S ++KL Y +G + ++ L + LA N Q +++ W+ Sbjct: 308 QNCSETCLQKLIYFHGRQPILDHLSLSLAAVCAGPVEGNENSQKIEHYMRLYQLAQRWEI 367 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P+FP++G D+++ G GK VG L + W+ S F + + +L Sbjct: 368 PVFPVSGKDLIERGFAKGKIVGQKLKELETIWVESGFLIDRNEL 411 >gi|319408915|emb|CBI82572.1| poly(A) polymerase [Bartonella schoenbuchensis R1] Length = 418 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/401 (39%), Positives = 236/401 (58%), Gaps = 6/401 (1%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W S + +L +L+ +++ IVGGAVR+ L+N + DIDIATT LP +V++ K + Sbjct: 12 WLQHSHIQTLLRILSLDGEEARIVGGAVRNQLLNQPISDIDIATTCLPQQVIKRVEKEGF 71 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K IPT + +GT+ ++ +++TTLRSD+ TDGRYAKV F RDWK D+ RRDFTINALY Sbjct: 72 KAIPTGVDFGTVTVVIESCCYEVTTLRSDIETDGRYAKVAFCRDWKKDAQRRDFTINALY 131 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D G++ D VGGLND+ ++TI+FIG A RI EDYLRILRFFRFFA YG D+ GL Sbjct: 132 CDASGQLYDEVGGLNDIESKTIRFIGVAKDRICEDYLRILRFFRFFAWYGGGRPDAQGLK 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A I K+GL LS ER+W E+ KLL A +P ++ M GI I + ++ +D + Sbjct: 192 ACISLKQGLHKLSPERVWGEMKKLLTASDPTRTLLWMRQSGILTLILPETEKWGIDAIHP 251 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 +++ E++ WK D LLR L+ D + MA + L E + L + + Sbjct: 252 LVKIERILGWKADPLLRLESLLP-PDPVRLHDMAHRLRLSNEEKKRLKEWAKLGIINPSC 310 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD-----TCFILQVLSDIIHWKKPLF 363 S +K+L Y +G + ++ +L + LA + +D T + LQ+ W+ P F Sbjct: 311 SDVCVKELIYFHGRQPVLDQLSLSLASICTGILDEDEILEKTEYYLQLYHLAQQWQIPTF 370 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P++G D++K G+ G +G L ++ W+ S F + + +L Sbjct: 371 PISGRDLMKKGLTQGALLGQKLKELEKIWVKSGFLMDRNEL 411 >gi|319898483|ref|YP_004158576.1| poly(A) polymerase [Bartonella clarridgeiae 73] gi|319402447|emb|CBI75988.1| poly(A) polymerase [Bartonella clarridgeiae 73] Length = 417 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 160/412 (38%), Positives = 244/412 (59%), Gaps = 11/412 (2%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q +W S++ +L +L++ +++ +VGGAVR+ L+ + DIDIATT LP +V++ + Sbjct: 9 QVRWLQCSNIQTLLRVLSQDGEEARVVGGAVRNQLLQQPISDIDIATTCLPQQVIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ +++TTLRSD+ TDGR+AKV+F+RDWK D+ RRDFTIN Sbjct: 69 VGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIETDGRHAKVIFSRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY + GK+ D VGG+ND+ RTI+FIG + RI EDYLRILRFFRFFA YG+ D++ Sbjct: 129 ALYCNAAGKIYDEVGGMNDIATRTIRFIGVSEQRICEDYLRILRFFRFFAWYGKGRPDAE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A ++ K GL+ LS ERIW E+ KLL A +P A++ M GI I + + +D Sbjct: 189 GLKACVRLKHGLQKLSPERIWEEMKKLLAASDPTRALLWMRQSGILTLILPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I+ EQ F WK+D LR LI + MA + L + + L + Sbjct: 249 IHSLIKTEQAFGWKVDPFLRLESLIPPHIVR-FHDMAGRLRLSNKEKIRLKQWSELELIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFL------ALHYNNLTHQDTCFILQVLSDIIHWK 359 S ++KL Y YG ++ +L + L AL + ++ C+I ++ W+ Sbjct: 308 HNCSDTFVQKLIYFYGRPPVLDQLALSLAAARDQALKDSKAAQKEECYI-RLYQLAQKWQ 366 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P FP++G D+++ G+ G +G L + WI S F + D + LL K+ Sbjct: 367 IPTFPISGKDLLERGLVKGMFLGKKLKELETMWIESGFLI---DRNKLLEKI 415 >gi|62290437|ref|YP_222230.1| polyA polymerase family protein [Brucella abortus bv. 1 str. 9-941] gi|82700360|ref|YP_414934.1| polynucleotide adenylyltransferase [Brucella melitensis biovar Abortus 2308] gi|189024667|ref|YP_001935435.1| polynucleotide adenylyltransferase [Brucella abortus S19] gi|237815945|ref|ZP_04594942.1| CCA-adding enzyme [Brucella abortus str. 2308 A] gi|254689739|ref|ZP_05152993.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 6 str. 870] gi|254697883|ref|ZP_05159711.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|254730774|ref|ZP_05189352.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 4 str. 292] gi|256257992|ref|ZP_05463528.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 9 str. C68] gi|260546972|ref|ZP_05822711.1| polynucleotide adenylyltransferase [Brucella abortus NCTC 8038] gi|260755270|ref|ZP_05867618.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 6 str. 870] gi|260758491|ref|ZP_05870839.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 4 str. 292] gi|260762316|ref|ZP_05874659.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884285|ref|ZP_05895899.1| polynucleotide adenylyltransferase [Brucella abortus bv. 9 str. C68] gi|297248822|ref|ZP_06932540.1| poly(A) polymerase [Brucella abortus bv. 5 str. B3196] gi|62196569|gb|AAX74869.1| polyA polymerase family protein [Brucella abortus bv. 1 str. 9-941] gi|82616461|emb|CAJ11526.1| Polynucleotide adenylyltransferase [Brucella melitensis biovar Abortus 2308] gi|189020239|gb|ACD72961.1| Polynucleotide adenylyltransferase [Brucella abortus S19] gi|237789243|gb|EEP63454.1| CCA-adding enzyme [Brucella abortus str. 2308 A] gi|260096022|gb|EEW79899.1| polynucleotide adenylyltransferase [Brucella abortus NCTC 8038] gi|260668809|gb|EEX55749.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 4 str. 292] gi|260672748|gb|EEX59569.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675378|gb|EEX62199.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 6 str. 870] gi|260873813|gb|EEX80882.1| polynucleotide adenylyltransferase [Brucella abortus bv. 9 str. C68] gi|297175991|gb|EFH35338.1| poly(A) polymerase [Brucella abortus bv. 5 str. B3196] Length = 423 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 154/408 (37%), Positives = 234/408 (57%), Gaps = 9/408 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + L + + LN+ ++ VGGAVR++L+ V D+D+ATT LP+ +R+ S+ + Sbjct: 13 WLNAKPLQALFTALNRDGGEARAVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGF 72 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 73 KPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALY 132 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 133 VTADGMVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 192 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + Sbjct: 193 ASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHG 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ + W+ D LLR L+ D + + K+ + R L ++ + + L Sbjct: 253 LVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVKPGL 311 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A D I ++L H+ P+F Sbjct: 312 SEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDAPVF 371 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG D++ GI G +G L + WI+S F L +E LLRKL Sbjct: 372 PITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDRE---ALLRKL 416 >gi|319405251|emb|CBI78856.1| poly(A) polymerase [Bartonella sp. AR 15-3] Length = 417 Score = 299 bits (765), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 161/412 (39%), Positives = 244/412 (59%), Gaps = 11/412 (2%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W S++ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP ++++ + Sbjct: 9 QVAWLQSSNIQTLLRVLSLDGEEARIVGGAVRNQLLQQPISDIDIATTCLPQQIIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ +++TTLRSD+ TDGR+AKV+F+RDWK D+ RRDFTIN Sbjct: 69 VGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIETDGRHAKVIFSRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY + G+V D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++ Sbjct: 129 ALYCNAAGEVYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL+ LS ER+W E+ KLL A +P A++ M GI I + + +D Sbjct: 189 GLKACTRLKHGLQKLSPERVWGEMKKLLTALDPTRALLWMRQSGILTLILPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I+ EQ F WKID LR LI D + MA++ L + + L + Sbjct: 249 IHSLIKTEQAFGWKIDPFLRLESLIP-PDVMRLHDMARRLCLSNKEKIRLKEWAELELIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNNLTHQDTCFILQVLSDIIHWK 359 S +++L Y YG + ++ +L + LA L + + ++ C+I ++ W+ Sbjct: 308 HDCSDIFMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKVVQKEECYI-RLYQLAREWQ 366 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P FP++G D+++ G+ G +G L + WI S F + D + LL K+ Sbjct: 367 IPTFPISGKDLLERGLVKGMFLGKKLKELETLWIESGFLI---DRNKLLEKI 415 >gi|260462573|ref|ZP_05810780.1| Polynucleotide adenylyltransferase region [Mesorhizobium opportunistum WSM2075] gi|259031769|gb|EEW33038.1| Polynucleotide adenylyltransferase region [Mesorhizobium opportunistum WSM2075] Length = 420 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 155/402 (38%), Positives = 230/402 (57%), Gaps = 7/402 (1%) Query: 2 VSIV-QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 VSI + W D L +L+ L +G +++ I GGAVR++LM V D DIATT LP+ + Sbjct: 3 VSIAGRADWLADKHLQRLLAALTEGGEEARIAGGAVRNTLMGQPVADTDIATTCLPEETI 62 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R +K +PT I +GTI ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RR Sbjct: 63 RRAQAQGFKPVPTGIEHGTITVVAGGKPYEITTLRADIETDGRRAKVSFGRDWKLDAERR 122 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYA+ GKV+D VGG+ D+ R ++FIGD RI EDYLRILRFFRFFA YGE Sbjct: 123 DFTINALYAEADGKVVDLVGGIADIEARRLRFIGDPEARIREDYLRILRFFRFFAWYGEG 182 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A + K GL LS+ER+WSE+ +LL A +P A++ M G+ + + Sbjct: 183 RPDAEGLKACARLKDGLAQLSAERVWSELKRLLSAPDPSRALLWMRQAGVLTAALPESER 242 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + + +AE+ W D++LR ++ D + +A++ L L + Sbjct: 243 WGIDAIHGLAKAEKDLGWPADAMLRLEAIVP-PDAARMKILAERLKLSTAEADRLRHWGL 301 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY-----NNLTHQDTCFILQVLSDI 355 + + E+ K Y + + +L++ LA +N + ++L+ Sbjct: 302 TAAVEPKTTEGELAKRLYRGDRQGFVDRLRLSLASARVRAVDDNDALLEAGGFSRLLAFA 361 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + W+KP FPL G D+ G PG K+G IL + + EW+ + F Sbjct: 362 LKWEKPSFPLKGADLTALGAKPGPKLGEILKNLEAEWVEAGF 403 >gi|254694228|ref|ZP_05156056.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261214534|ref|ZP_05928815.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 3 str. Tulya] gi|260916141|gb|EEX83002.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 3 str. Tulya] Length = 423 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 153/408 (37%), Positives = 234/408 (57%), Gaps = 9/408 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + L + + LN+ ++ VGGAVR++L+ V D+D+ATT LP+ +R+ S+ + Sbjct: 13 WLNAKPLQALFTALNRDGGEARAVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGF 72 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 73 KPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALY 132 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 133 VTADGMVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 192 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K G+ +S+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + Sbjct: 193 ASARLKDGIAQISAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHG 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ + W+ D LLR L+ D + + K+ + R L ++ + + L Sbjct: 253 LVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVKPGL 311 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A D I ++L H+ P+F Sbjct: 312 SEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDAPVF 371 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG D++ GI G +G L + WI+S F L +E LLRKL Sbjct: 372 PITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDRE---ALLRKL 416 >gi|306844552|ref|ZP_07477141.1| polyA polymerase family protein [Brucella sp. BO1] gi|306275163|gb|EFM56919.1| polyA polymerase family protein [Brucella sp. BO1] Length = 423 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 153/408 (37%), Positives = 232/408 (56%), Gaps = 9/408 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ + Sbjct: 13 WLNAKPLQALFKALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGF 72 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 73 KPVPTGMEHGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALY 132 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 133 VTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 192 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + Sbjct: 193 ASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHG 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ + W+ D LLR L+ D + + K+ + R L ++ + + L Sbjct: 253 LVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVKPGL 311 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A D I ++L H+ P+F Sbjct: 312 SEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDAPVF 371 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG D++ GI G +G L + WI+S F L D LL KL Sbjct: 372 PVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSL---DRSALLDKL 416 >gi|148560186|ref|YP_001259427.1| polyA polymerase family protein [Brucella ovis ATCC 25840] gi|148371443|gb|ABQ61422.1| polyA polymerase family protein [Brucella ovis ATCC 25840] Length = 405 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/399 (38%), Positives = 232/399 (58%), Gaps = 9/399 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 + + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ +K +PT + + Sbjct: 4 LFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGFKPVPTGMEH 63 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY G VID Sbjct: 64 GTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALYVTADGTVID 123 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL AS + K G+ Sbjct: 124 QVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLRASARLKDGI 183 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + ++ + Sbjct: 184 AQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHGLVRTQSDLG 243 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 W+ D LLR L+ D + + K+ + R L ++ + + LS +KK Sbjct: 244 WQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADVVKPGLSEQALKKAI 302 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLFPLTGDDVVK 372 Y + ++ ++++ A D I ++L H+ P+FP+TG D++ Sbjct: 303 YRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDAPVFPITGGDLLA 362 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 GI G +G L + WI+S F L +E LLRKL Sbjct: 363 RGIEKGPGLGETLRSLETLWIDSCFSLDRE---ALLRKL 398 >gi|306843101|ref|ZP_07475723.1| polyA polymerase family protein [Brucella sp. BO2] gi|306286706|gb|EFM58259.1| polyA polymerase family protein [Brucella sp. BO2] Length = 423 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 153/408 (37%), Positives = 232/408 (56%), Gaps = 9/408 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ + Sbjct: 13 WLNAKPLQALFKALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGF 72 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 73 KPVPTGMEHGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALY 132 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 133 VTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 192 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + Sbjct: 193 ASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHG 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ + W+ D LLR L+ D + + K+ + R L ++ + + L Sbjct: 253 LVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVKPGL 311 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A D I ++L H+ P+F Sbjct: 312 SEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDAPVF 371 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG D++ GI G +G L + WI+S F L D LL KL Sbjct: 372 PVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSL---DRSALLDKL 416 >gi|90418300|ref|ZP_01226212.1| polynucleotide adenylyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90337972|gb|EAS51623.1| polynucleotide adenylyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 413 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 233/409 (56%), Gaps = 8/409 (1%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + ++ W L +L+ L+ +++ IVGGAVR+S++ V DIDIATT LPD +R Sbjct: 3 ATTIEADWLTTPGLQTLLATLSADGEEARIVGGAVRNSVLGHPVSDIDIATTTLPDETVR 62 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 ++ +PT I +GT+ ++ + +++TTLR D+ TDGR+A V F RDWKAD+ RRD Sbjct: 63 RVEAAGFRAVPTGIEHGTVTVVTPEHAYEVTTLRRDIETDGRHAAVHFGRDWKADAERRD 122 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTINALYA G ++D VGG+ DL ++ ++FIGD+ RI EDYLRILRFFRFFA YG+ Sbjct: 123 FTINALYARADGSIVDLVGGIEDLGSQALRFIGDSETRIREDYLRILRFFRFFAWYGKGR 182 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D+ G+ A+ + K GL LS ER+W+E+ KLL A +P A++ M G+ I + + Sbjct: 183 PDAAGIRAATRLKDGLDGLSVERVWTELKKLLAAPDPSRALLWMRQTGVLTRILPESERW 242 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +D + ++E+E F W D +LR ++ D + MA++ L R ++ F Sbjct: 243 GIDAIHSLVESEGAFGWAPDPMLRLAAIVP-PDPARLTQMAERLKLSNADRDRIVGFAIA 301 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIA---KLKIFLALHYNNLTHQDTCFILQV---LSDI 355 + S + Y +GD V IA +L + A + + I ++ L + Sbjct: 302 EPAKPEESDSAFRTRLY-FGDGVAIADGLRLAVASARGKAESSRETLDAIARLTGQLEIV 360 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + P FP++G+D+ GI PG ++G L ++ W +S F L +E L Sbjct: 361 ATFAPPAFPVSGEDLKSAGIAPGPEMGKTLDRLRKLWASSGFVLGRESL 409 >gi|163867932|ref|YP_001609136.1| poly(A) polymerase [Bartonella tribocorum CIP 105476] gi|161017583|emb|CAK01141.1| poly(A) polymerase [Bartonella tribocorum CIP 105476] Length = 417 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 161/411 (39%), Positives = 241/411 (58%), Gaps = 9/411 (2%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W SD+ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP +++ + Sbjct: 9 QVAWLQKSDIQTLLRVLSLEGEEARIVGGAVRNQLLGQPISDIDIATTCLPQQIITRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GTI ++ +++TTLRSD+ TDGR+AKV F RDWK D+ RRDFTIN Sbjct: 69 AGFKAIPTGIAFGTITVVAHSCAYEVTTLRSDIETDGRHAKVAFGRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D G + D VGGL+D+ ++T++FIG A +RI EDYLRILRFFRFFA YG D + Sbjct: 129 ALYCDAAGNLYDDVGGLSDIESQTVRFIGVAENRISEDYLRILRFFRFFAWYGVGRPDGE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A ++ K GL+ LSSERIW+E+ KLL A +P A++ M I IF + ++ +D Sbjct: 189 GLKACVRLKDGLQKLSSERIWAEMKKLLLASDPTRALLWMRQSRILSLIFPETEKWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++E EQ WK+D LR L+ D + MA++ + L + Sbjct: 249 IHALVETEQTLGWKVDPFLRLESLLP-PDPIRLHKMAQRLRFSHKETTRLKEWAELEIIS 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLAL-HYNNLTHQD----TCFILQVLSDIIHWKK 360 + S ++KL Y +G + ++ +L + +A H + L D T L++ + W+ Sbjct: 308 QNCSDHFVQKLIYFHGRQPVLDQLSLSIAASHVDTLEKGDALQKTEDYLKLYQLVQKWQI 367 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P FP+ G+D++K G G +G L + W+ S F + D H LL K+ Sbjct: 368 PTFPINGNDLIKKGFSKGILLGKKLKELEMIWVESGFLM---DRHALLEKI 415 >gi|240850137|ref|YP_002971530.1| tRNA nucleotidyltransferase [Bartonella grahamii as4aup] gi|240267260|gb|ACS50848.1| tRNA nucleotidyltransferase [Bartonella grahamii as4aup] Length = 418 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 164/414 (39%), Positives = 236/414 (57%), Gaps = 15/414 (3%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W D+ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP +V+ + Sbjct: 9 QVAWLQQKDIQTLLRVLSLEGEEARIVGGAVRNQLLGQPISDIDIATTCLPQQVIARVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GTI ++ +++TTLR D+ TDGR+AKV F RDWK D+ RRDFTIN Sbjct: 69 AGFKAIPTGIAFGTITVVAHSCSYEVTTLRCDIETDGRHAKVAFGRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D G + D VGGL+D+ +RT++FIG A RI EDYLRILRFFRFFA YG D Sbjct: 129 ALYCDAAGNLYDDVGGLSDIASRTVRFIGIAEDRICEDYLRILRFFRFFAWYGAGRPDVQ 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GLK LSSERIW+E+ KLL A +P A++ M I IF + + +D Sbjct: 189 GLKACVSLKHGLKKLSSERIWAEMKKLLAAFDPTRALLWMRQSRILALIFPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +++ EQ WK+D LLR L+ D + MA++ + L + Sbjct: 249 IHALVKTEQALGWKVDPLLRLESLLP-PDPIRLHEMAQRLHFSHKETTRLKEWAELEIIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLAL-HYNNLTHQDTCFILQVLSDII-------H 357 + S ++KL Y +G + ++ +L + +A H +NL D LQ D + Sbjct: 308 QNCSDHFVQKLIYFHGRQPVLDQLSLSVAASHLDNLEKSDA---LQKAEDYVKLYQLAKK 364 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 W+ P FP+ G+D++K G G +G L + W+ S F + D H LL K+ Sbjct: 365 WQIPTFPINGNDLIKKGFAKGVLLGKKLKELEMIWVESGFLM---DRHALLEKI 415 >gi|239832436|ref|ZP_04680765.1| CCA-adding enzyme [Ochrobactrum intermedium LMG 3301] gi|239824703|gb|EEQ96271.1| CCA-adding enzyme [Ochrobactrum intermedium LMG 3301] Length = 417 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 155/408 (37%), Positives = 232/408 (56%), Gaps = 9/408 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W L + LN+ + +VGGAVR++L+ V D+D+ATT +PD +R+ ++ + Sbjct: 11 WLKAKPLQALFKALNRDGGEVRVVGGAVRNTLLGTGVSDVDLATTHVPDETVRLATEAGF 70 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 71 KPVPTGIEHGTITVVVQGHPFEVTTLRQDIETNGRHAKVAFGTDWKADAERRDFTINALY 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 A G +ID VGGL D+ +RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 131 ATADGTIIDDVGGLADIESRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 190 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K GL LS+ER+WSE+ KLL A +P A++ M GG+ I + ++ +D + Sbjct: 191 ASARLKDGLSQLSAERVWSELKKLLSAPDPSRALLWMRQGGVLNLILPESEKWGIDAIHG 250 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ E W+ D LLR +I D + M K+ + R L ++ + + L Sbjct: 251 LVRTEADLGWQADPLLRLESIIP-PDSVRMEEMGKRLKMSNAERARLEAWARADAVKPEL 309 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A D + ++L + P+F Sbjct: 310 SEQALKKTIYRGSKQAVLDRIRLAYAAARAEAAGSDEAMVRAGGFARLLDTAERYDAPVF 369 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG D++ GI G +G L + WI+S F L D LL KL Sbjct: 370 PVTGGDLLALGIQKGPGLGEALRSLETFWIDSGFSL---DRTALLDKL 414 >gi|163761621|ref|ZP_02168692.1| poly(A) polymerase [Hoeflea phototrophica DFL-43] gi|162281217|gb|EDQ31517.1| poly(A) polymerase [Hoeflea phototrophica DFL-43] Length = 426 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 139/408 (34%), Positives = 241/408 (59%), Gaps = 8/408 (1%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ WF + L I ++ N+ ++ +VGGAVR++LM L V D+D+ATT P++V+ Sbjct: 16 SVAGEDWFANPALGRIFAVFNQDGEEIRVVGGAVRNALMGLPVSDVDLATTWAPEQVVAR 75 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +PT I +GT+ ++ + F+ITTLR D TDGR AKV F +DW+ D+ RRDF Sbjct: 76 AEAEGIRAVPTGIDHGTVTLVIDGQGFEITTLRHDAETDGRRAKVNFGQDWQVDAERRDF 135 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TINALYA+Q+G++ID +GGL D+ +RT++FIG A R+ EDYLR+LR+FRF+A YG Sbjct: 136 TINALYANQKGEIIDLIGGLEDIESRTVRFIGAADARVAEDYLRVLRYFRFYAGYGSGRP 195 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D+ L A +A+ L LS+ERIW E+ L A++P A++ M G+ + + ++ Sbjct: 196 DAAALKACTRARDRLSSLSAERIWKELKLLFAARDPGRALLWMRQTGVLTAVLPETEKWG 255 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 +D ++ +I E +W +D +LR + ++ D + + ++A + + R L ++ Sbjct: 256 IDSVAGLIATETALDWDVDPMLRLMAIVP-PDGERMKALAAQLKMSRAEAERLSAWAAAP 314 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV------LSDII 356 + T +I + +L Y +G + + ++++ + + DT + + L+ Sbjct: 315 VVKPTAAITVLDRLLYRHGVEPLCDRIRLSI-VSARTRVETDTAAMTEAAGFTRHLAHAS 373 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 W +P+FP++G D++ G+ PG ++G L + W++S+F LS++ L Sbjct: 374 GWTRPVFPVSGADLIAMGVEPGPEMGARLNALEDRWVDSNFALSKDAL 421 >gi|327188338|gb|EGE55555.1| poly(A) polymerase protein [Rhizobium etli CNPAF512] Length = 425 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/410 (39%), Positives = 236/410 (57%), Gaps = 14/410 (3%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSC--------IVGGAVRDSLMNLSVQDIDIAT 52 M + WF D L IL+LLN G +VGGAVR+SLM L V DIDIAT Sbjct: 1 MTGLADQAWFRDPALGRILALLNAGGGAGGGSDGGEGRVVGGAVRNSLMGLPVSDIDIAT 60 Query: 53 TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD 112 T+ P+ V+ + K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKVVF+ D Sbjct: 61 TLTPEIVIERAAAAGIKAVPTGLQHGTVTLVIDGKPFEVTTLRTDVETDGRHAKVVFSTD 120 Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 WKAD+ RRD TINALYAD +G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFR Sbjct: 121 WKADAERRDLTINALYADARGEVVDLVGGLADIEARNIRFIGDAATRIAEDHLRILRFFR 180 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 FFA+YG D++GL A A+ LK LS+ER+WSE+ KLL A +P A++ M + Sbjct: 181 FFAYYGSGRPDAEGLKACAAARSKLKTLSAERVWSELRKLLGAADPGRALLWMRQVAVLT 240 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 EI + + +D + ++ E+ W D LLR ++ D + ++A + L Sbjct: 241 EILPETERWGIDAIPALVATEKALGWAPDPLLRLAAIVP-PDAARLEALAARLKLSNAEA 299 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY----NNLTHQD-TCF 347 L ++ ++ ++L Y G + +LK+ L + +L+ + Sbjct: 300 AALKAWAMAAPIDDEITSAAFERLLYRNGADGITTRLKLALGVARAKAEGDLSEMARSAR 359 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + ++L + WKKP FP+ G DV+ GIP G +VG +L + +W+ +F Sbjct: 360 LGKLLDRAMTWKKPQFPVNGADVIAAGIPSGPRVGELLGSLENQWVEENF 409 >gi|49475914|ref|YP_033955.1| Poly(a) polymerase [Bartonella henselae str. Houston-1] gi|49238722|emb|CAF27976.1| Poly(a) polymerase [Bartonella henselae str. Houston-1] Length = 417 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 156/406 (38%), Positives = 237/406 (58%), Gaps = 10/406 (2%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W S + +L +L+ +++ IVGGAVR+ L+ + D+DIATT LP +++ + Sbjct: 9 QVDWLQHSHIQKLLHVLSLDGEEARIVGGAVRNQLLEQPISDVDIATTCLPQQIIVRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ + +++TTLRSD+ TDGR+AKV F RDW+ D+ RRDFT+N Sbjct: 69 AGFKAIPTGIAFGTVTVVSQSCSYEVTTLRSDIETDGRHAKVAFGRDWQKDAERRDFTMN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D G + D VGGL+D+ +RT++FIG A RI EDYLRILRFFRFFA YG D Sbjct: 129 ALYCDAAGNLYDAVGGLDDIASRTVRFIGIAEKRIREDYLRILRFFRFFAWYGAGRPDVQ 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL+ LSSERIW E+ KLL A NP+ A++ M GI IF + ++ +D Sbjct: 189 GLKACVCLKHGLQKLSSERIWGEMKKLLTAPNPIRALLWMRQSGILTLIFPETEKWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +++ EQ WK+D LLR L+ D + MA + L + + L + Sbjct: 249 IHSLVKTEQDLGWKVDPLLRLESLLP-PDPVRLYEMAHRLPLSHKEKTRLKEWAELEIIC 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-------W 358 + S ++KL Y +G + ++ +L + LA + ++ + LQ + D + W Sbjct: 308 QNCSDHFLQKLIYFHGRQPVLDQLSLSLAAAHVDVLKGNEA--LQKVEDYMRLYQFAQKW 365 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + P FP++G D++K G G +G L + WI S F + + L Sbjct: 366 QIPTFPISGKDLMKKGFSKGVLLGQKLKELETLWIESGFLIDRNSL 411 >gi|153008942|ref|YP_001370157.1| polynucleotide adenylyltransferase region [Ochrobactrum anthropi ATCC 49188] gi|151560830|gb|ABS14328.1| Polynucleotide adenylyltransferase region [Ochrobactrum anthropi ATCC 49188] Length = 415 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 152/401 (37%), Positives = 229/401 (57%), Gaps = 6/401 (1%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP +R+ ++ + Sbjct: 9 WLKAKPLQALFKALNRDGGEARVVGGAVRNTLLGTKVSDVDLATTHLPQDTVRLANEAGF 68 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY Sbjct: 69 KPVPTGIEHGTITVVVQGHPFEVTTLRQDIETNGRHAKVAFGTDWKADAERRDFTINALY 128 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G VID VGGL D+ +RT++FIGDA RI EDYLRILRFFRFFA YG +++GL Sbjct: 129 VTADGGVIDDVGGLGDIESRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLR 188 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 AS + K GL LS+ER+WSE+ KLL A +P A++ M G+ I + ++ +D + Sbjct: 189 ASARLKDGLTQLSAERVWSELKKLLSAPDPSRALLWMRQAGVLNLILPESEKWGIDAIHG 248 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ E W+ D LLR +I D + M K+ + R L ++ + + L Sbjct: 249 LVRTEADLGWQPDPLLRLESIIP-PDSVRMEEMGKRLKMSNAERARLEAWARADTVKPEL 307 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLF 363 S +KK Y + ++ ++++ A + D I ++L H+ P+F Sbjct: 308 SEQALKKTIYRGSKQAVLDRIRLAYAAARADAAGSDDAMIRAGGFARLLDAAEHYDAPVF 367 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P+TG D++ GI G +G L + WI+S F L + L Sbjct: 368 PVTGSDLLALGIEKGPGLGETLRSLETFWIDSGFSLDRATL 408 >gi|49474494|ref|YP_032536.1| Poly(A) polymerase [Bartonella quintana str. Toulouse] gi|49239998|emb|CAF26412.1| Poly(A) polymerase [Bartonella quintana str. Toulouse] Length = 417 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 159/396 (40%), Positives = 231/396 (58%), Gaps = 15/396 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++LSL GE+ IVGGAVR+ L+ + DID+ATT P +V+ + +K IPT I+ Sbjct: 23 HVLSL--DGEEAR-IVGGAVRNQLLEQPISDIDVATTCFPQQVIARVEEAGFKAIPTGIA 79 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 +GT+ ++ + +++TTLRSD+ TDGR+AKV F RDW+ D+ RRDFT+NALY D G + Sbjct: 80 FGTVTVVAQSCSYEVTTLRSDIETDGRHAKVAFDRDWQKDAERRDFTMNALYCDAAGNLY 139 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D VGGLND+ +RTI+FIG +RI EDYLRILRFFRFFA YG D GL A + K G Sbjct: 140 DAVGGLNDVASRTIRFIGIPENRIREDYLRILRFFRFFAWYGAGRPDVQGLKACVYLKHG 199 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L+ LSSERIW E+ KLL A NP A++ M GI IF + ++ +D + +++ EQ Sbjct: 200 LQKLSSERIWGEMKKLLAAPNPTRALLWMRQSGILTLIFPETEKWGIDAIHSLVKTEQAL 259 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 WK+D LLR L+ D + MA + L + L + + S ++KL Sbjct: 260 GWKVDPLLRLESLLP-PDPIRLHEMAHRLHLSYKETKRLKEWAELEIISQNCSENFVQKL 318 Query: 317 FYLYGDKVMIAKLKIFL-ALHYNNLTHQDTCFILQVLSDIIH-------WKKPLFPLTGD 368 Y YG + ++ +L + L A H + L + LQ + + W+ P FP++G Sbjct: 319 IYFYGRQPVLDQLSLSLVAAHVDALKGNEA---LQKAENYMRLYQFAQKWQIPTFPVSGK 375 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 D++K G+ G +G L ++ WI S F + + L Sbjct: 376 DLMKKGLAKGVLLGQKLKELERIWIESGFSIDRNSL 411 >gi|319403812|emb|CBI77396.1| poly(A) polymerase [Bartonella rochalimae ATCC BAA-1498] Length = 417 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 157/412 (38%), Positives = 243/412 (58%), Gaps = 11/412 (2%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W S++ +L +L+ +++ +VGGAVR+ L+ + DIDIATT LP ++++ + Sbjct: 9 QVAWLQSSNIQTLLRVLSMDGEEARVVGGAVRNQLLQQPISDIDIATTCLPQQIIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ +++TTLRSD+ TDGR+A+VVF+RDWK D+ RRDFTIN Sbjct: 69 VGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIQTDGRHAEVVFSRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY + G++ D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++ Sbjct: 129 ALYCNAAGEIYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL LS ERIW E+ KLL A +P A++ M GI I + + +D Sbjct: 189 GLKACTRLKHGLHKLSPERIWGEMKKLLTALDPTRALLWMRQSGILTFILPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I+ EQ F+W++D LR LI D + MA++ L + + L + Sbjct: 249 IHSLIKTEQAFDWEVDPFLRLESLIP-PDVMRLHDMARRLHLSNKEKIRLKEWAELELIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNNLTHQDTCFILQVLSDIIHWK 359 +++L Y YG + ++ +L + LA L + ++ C+I ++ W+ Sbjct: 308 YDCPDILMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKAVQKEECYI-RLYQLARKWQ 366 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P FP++G D+++ G+ GK +G L + W+ S F + D + LL K+ Sbjct: 367 IPTFPISGKDLLERGLVKGKFLGKKLKELESLWVESGFLI---DRNKLLEKI 415 >gi|304393674|ref|ZP_07375602.1| tRNA-nucleotidyltransferase 1 [Ahrensia sp. R2A130] gi|303294681|gb|EFL89053.1| tRNA-nucleotidyltransferase 1 [Ahrensia sp. R2A130] Length = 403 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 146/405 (36%), Positives = 238/405 (58%), Gaps = 7/405 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + W H L +L+LLN GE ++ I GGAVR+SL++ + D+D+ATT++P V+ Sbjct: 1 MAEHIDQPWLHRPQLQALLALLNDGEGEAKIAGGAVRNSLLDQPIADVDVATTLVPSEVV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 +K +PT I +GT+ I +++TTLR+D+ TDGR+A VVF DW+AD+ RR Sbjct: 61 ERLKSAGHKSVPTGIDHGTVTAIIDGDAYEVTTLRADVETDGRHATVVFGTDWEADARRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D T+NALY D G V D +GG+ D+ + FI DA RI EDYLRILRFFRFFA YG+ Sbjct: 121 DLTMNALYLDADGTVFDPLGGMQDVLAARVVFIDDATQRIREDYLRILRFFRFFAWYGKF 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL A + K GL+ LS+ER+W E++K+L A +P+ A++ M G+ +I + + Sbjct: 181 RPDADGLRACAREKDGLEGLSAERVWQELSKMLAAPDPVRAVLWMRQTGVLSKILPESEN 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +IE E+ +W+ D++LR + ++ +++ + S ++ LP +R L+++ Sbjct: 241 WGIDGIHPLIETEKERKWEPDAVLRLMAILPPMEER-VASATERLKLPNSVRDRLLAWAQ 299 Query: 301 CNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 KT + L+ D+ + +L++ +A + D + L + W+ Sbjct: 300 LELPAAKTKQEAFARFLYRTNNDQAVTDRLRLAIA-----TSDADAKKRRRQLKWLKRWQ 354 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 +P+ P+ G D++ G+ PG + L ++ WI+S F LS E+L Sbjct: 355 RPILPVRGADLIAAGMEPGPAISERLSKMEERWIDSDFALSSEEL 399 >gi|319406819|emb|CBI80452.1| poly(A) polymerase [Bartonella sp. 1-1C] Length = 417 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 157/412 (38%), Positives = 242/412 (58%), Gaps = 11/412 (2%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W S++ +L +L+ +++ +VGGAVR+ L+ + DIDIATT LP ++++ + Sbjct: 9 QAAWLQSSNIQTLLRVLSLDGEEARVVGGAVRNQLLKQPISDIDIATTCLPQQIIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ +++TTLRSD+ TDGR+A+VVF+RDWK D+ RRDFTIN Sbjct: 69 IGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIQTDGRHAEVVFSRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY + G++ D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++ Sbjct: 129 ALYCNAAGEIYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A K GL LS ERIW E+ KLL A +P A++ M GI I + + +D Sbjct: 189 GLKACTHLKHGLHKLSPERIWGEMKKLLTALDPTRALLWMRQSGILTFILPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I+ EQ F+W++D LR LI D + MA++ L + + L + Sbjct: 249 IHSLIKTEQAFDWEVDPFLRLESLIP-PDVMRLHDMARRLHLSNKEKIRLKEWAELELIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNNLTHQDTCFILQVLSDIIHWK 359 +++L Y YG + ++ +L + LA L + ++ C+I ++ W+ Sbjct: 308 YDCPDILMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKAVQKEECYI-RLYQLARKWQ 366 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P FP++G D+++ G+ GK +G L + W+ S F + D + LL K+ Sbjct: 367 IPTFPISGKDLLERGLVKGKFLGKKLKELESLWVESGFLI---DRNKLLEKI 415 >gi|190892793|ref|YP_001979335.1| poly(A) polymerase [Rhizobium etli CIAT 652] gi|190698072|gb|ACE92157.1| poly(A) polymerase protein [Rhizobium etli CIAT 652] Length = 377 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 216/377 (57%), Gaps = 6/377 (1%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT 100 M L V DIDIATT+ P+ V+ + K +PT + +GT+ ++ K F++TTLR+D+ T Sbjct: 1 MGLPVSDIDIATTLTPEIVIERAAAAGIKAVPTGLQHGTVTLVIDGKPFEVTTLRTDVET 60 Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 DGR+AKV F+ DWKAD+ RRD TINALYAD +G+V+D VGGL D+ R I+FIGDA RI Sbjct: 61 DGRHAKVAFSTDWKADAERRDLTINALYADARGEVVDLVGGLADIEARNIRFIGDAATRI 120 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED+LRILRFFRFFA+YG D++GL A A+ LK LS+ER+WSE+ KLL A +P Sbjct: 121 AEDHLRILRFFRFFAYYGSGRPDAEGLKACAAARSKLKTLSAERVWSELRKLLGAADPGR 180 Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 A++ M + EI + + +D + ++ E+ W D LLR ++ D + + Sbjct: 181 ALLWMRQVAVLTEILPETERWGIDAIPALVATEKALGWAPDPLLRLAAIVP-PDAARLEA 239 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 +A + L L ++ +S ++L Y G + +LK+ L + Sbjct: 240 LAARLKLSNAEAATLKAWAMAAPIDDEISSAAFERLLYRNGADGITTRLKLALGVARGKA 299 Query: 341 TH-----QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + + ++L + WKKP FP+ G DV+ GIP G +VG +L + +W+ Sbjct: 300 EGDLSEMARSARLGKLLDRAMTWKKPQFPVNGADVIAAGIPSGPRVGELLGSLENQWVEE 359 Query: 396 SFQLSQEDLHHLLRKLI 412 +F + +L L++ + Sbjct: 360 NFASDRAELLARLQERV 376 >gi|86358651|ref|YP_470543.1| poly(A) polymerase protein [Rhizobium etli CFN 42] gi|86282753|gb|ABC91816.1| poly(A) polymerase protein [Rhizobium etli CFN 42] Length = 377 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 215/381 (56%), Gaps = 9/381 (2%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT 100 M L V DIDIATT+ P V+ + K +PT + +GT+ ++ K F++TTLR+D+ T Sbjct: 1 MGLPVSDIDIATTLTPQIVLERAAAAGLKAVPTGLQHGTVTLVVDGKPFEVTTLRTDIET 60 Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 DGR+AKV F+ DWKAD+ RRD TINALYAD G+V+D VGGL D+ R I+FIGDA RI Sbjct: 61 DGRHAKVAFSTDWKADAERRDLTINALYADADGEVVDLVGGLADIEKRNIRFIGDASTRI 120 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED+LRILRFFRFFA+YG D++GL A A+ +K LS+ER+WSE+ KLL A +P Sbjct: 121 AEDHLRILRFFRFFAYYGSGRPDAEGLKACAAARSKIKTLSAERVWSELRKLLGAADPGR 180 Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 A++ M + EI + + +D + ++ E+ W D LLR ++ + + + Sbjct: 181 ALLWMRQVAVLTEILPESERWGIDAIPSLVATEKALGWAPDPLLRLAAIVP-PEAARLEA 239 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 +A + L L ++ +S ++L Y G ++ +LK+ LA+ Sbjct: 240 LAARLKLSNAEAATLKAWATAAPVNDEISPAAFERLLYRNGTDGIMTRLKLALAVARGKA 299 Query: 341 TH-----QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + + +++ +WKKP FPL G DV+ G+ G +VG +L + +W+ Sbjct: 300 EGDLGEMARSARLCKLMDRAANWKKPQFPLNGGDVLAAGVASGPRVGELLAVLENQWVEE 359 Query: 396 SFQLSQEDLHHLLRKLIASSQ 416 +F D LL +L +Q Sbjct: 360 NF---TSDRTALLARLKERAQ 377 >gi|154252684|ref|YP_001413508.1| polynucleotide adenylyltransferase region [Parvibaculum lavamentivorans DS-1] gi|154156634|gb|ABS63851.1| Polynucleotide adenylyltransferase region [Parvibaculum lavamentivorans DS-1] Length = 417 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/398 (37%), Positives = 221/398 (55%), Gaps = 9/398 (2%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ + W ++ D ++ L + VGGAVR+ LM V DIDIATT PD + Sbjct: 6 SLARAAWLNEPDTRAVMEALAAKGGTARFVGGAVRNQLMGEPVSDIDIATTETPDAAKAL 65 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 KV+PT I +GTI + ++F+ITTLR D+ TDGR A V FT DW AD+ RRDF Sbjct: 66 LEAKGIKVVPTGIDHGTITAVTPTRHFEITTLRVDVKTDGRRADVAFTEDWTADAGRRDF 125 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 T+NALY D G + D +GGL DL+ R ++FIGDAH RI EDYLRILRFFRF A YG+ Sbjct: 126 TMNALYGDADGTIHDPLGGLADLKARRVRFIGDAHERIREDYLRILRFFRFHAWYGKGEP 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D GL A+ + ++GL+ LS ER+ E+ K + A N A M GI + + + Sbjct: 186 DEAGLRAAAEEREGLRQLSGERVRDELFKTITADNAAAAFRQMAAAGILQIVLPEASR-- 243 Query: 243 LDQLSQV--IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 LD+ ++ IEA+Q+F K D +LR ++ DK + ++A + L R LI+ Sbjct: 244 LDRFEKLVEIEAQQLFVQKPDPVLRLGAMLDL-DKAGVEALAARLKLSNRDRDRLIAMLT 302 Query: 301 CNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 LS+ E+++ Y G + + K ++ L + H + +L+ W+ Sbjct: 303 DTTKIVCYLSMREVRRALYQMG--LQLFKDRVSLGWAEDRRGHNAFQW-RAMLAMADSWE 359 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 KP+ PLTG+ + G+P G ++G I ++ WI+S F Sbjct: 360 KPVLPLTGEMIKAAGVPEGPQIGRIRDEVEEWWIDSDF 397 >gi|114569280|ref|YP_755960.1| polynucleotide adenylyltransferase region [Maricaulis maris MCS10] gi|114339742|gb|ABI65022.1| Polynucleotide adenylyltransferase region [Maricaulis maris MCS10] Length = 419 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 218/411 (53%), Gaps = 12/411 (2%) Query: 5 VQHKWFHDSDLINILSLLNK-GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 +H W D + +++ L G+ +S VGG VR++L+ V DIDIAT + PD+V+ Sbjct: 15 ARHGWLTDPATVRVMAALAAAGQGESRFVGGCVRNALLGEPVADIDIATQLDPDQVIAAA 74 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 K +PT ++GTI ++C + F++T+LR D+ TDGR A V FTRDW D+ RRDF Sbjct: 75 KAAGLKPVPTGKAHGTITVVCDGQPFEVTSLRRDVATDGRRAVVSFTRDWAEDAKRRDFR 134 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +NALYAD G V D GGL D+ NR F+GD RI EDYLRILR FRF A YG D Sbjct: 135 LNALYADADGTVFDPTGGLKDVENRRFVFVGDPEMRIREDYLRILRLFRFEAWYGRGAPD 194 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + A +K ++GL LS ER+W+E+ KLL A++PL A+ M G+ ++ L V SL Sbjct: 195 EAAMAAVLKHREGLHKLSVERVWAELKKLLAAQDPLAAVTAMRESGLL-DMILGVNG-SL 252 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-- 301 LS +I + + DS+LRF L ++ I +MA K + + L N Sbjct: 253 RVLSGIIAQDVEYGLAPDSMLRFAALADGGPER-IRTMAAKMKMSKAEAGRLEGAVNPVA 311 Query: 302 --NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + + ++ G + ++++ A +D + Q + WK Sbjct: 312 REDVRKAWSDSAAAERAIMALGARAFEDQVRLEAAGEVAP-PPRDWTLLAQFARE---WK 367 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +P FP+ G D++ G PG +G+ L K WI F+ ++E+L L K Sbjct: 368 EPEFPVKGGDLILLGYEPGPMLGDALDELKALWIADRFEPTKEELIARLTK 418 >gi|254293106|ref|YP_003059129.1| polynucleotide adenylyltransferase region [Hirschia baltica ATCC 49814] gi|254041637|gb|ACT58432.1| Polynucleotide adenylyltransferase region [Hirschia baltica ATCC 49814] Length = 428 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 211/394 (53%), Gaps = 9/394 (2%) Query: 7 HKWFHDSDLINILSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 W ++ LN G D + VGG VR++L+ V DIDIAT PD V R K Sbjct: 12 QPWMQADGARRVMRALNAGAPDSARFVGGCVRNALLGQPVADIDIATKWEPDEVTRRLLK 71 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 V PT I +GT+ + + ++ITTLR D+ TDGR+A V FT DW D+ RRDF +N Sbjct: 72 ANVAVHPTGIEHGTVTAVANNQPYEITTLRRDVSTDGRHATVAFTTDWTEDAKRRDFHVN 131 Query: 126 ALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D G +ID G G++DLR + I FIGDA R+ EDYLRILRFFRF A YG +D Sbjct: 132 ALYCDLMGDLIDPTGRGISDLREQKIAFIGDADTRLKEDYLRILRFFRFNAWYGSGQLDV 191 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +GL A ++ + GL+ +S ERIWSE+ K+L A++P + M G+ + F+ + I LD Sbjct: 192 EGLSACLRHRAGLETISVERIWSELKKILAARDPRVVLEAMSQTGVLQ--FVLSEAIGLD 249 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFNCNF 303 + ++ E D LR + L +D I + K+ + E + L + + Sbjct: 250 LFNALVGLELEEHLAPDPYLRLLSLYP-KDIDVISADVKRLKMSNYEKKRLLATASDTTD 308 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 K S ++ Y G V A+ ++ A+ H+ + Q +++P+F Sbjct: 309 FSKEFSAKAFRRAIYKTGKDVFKARARLAWAVRGREANHRYWRVLTQSAE---KYERPVF 365 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 P++G+ ++ G+P GK VG +L +Q WI+ F Sbjct: 366 PISGEHIIAVGVPEGKPVGEVLQRAEQWWIDEDF 399 >gi|218673043|ref|ZP_03522712.1| poly(A) polymerase protein [Rhizobium etli GR56] Length = 365 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 127/344 (36%), Positives = 194/344 (56%), Gaps = 6/344 (1%) Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 + +GT+ ++ K F++TTLR+D+ TDGR AKV F+ DWKAD+ RRD TINALYAD +G Sbjct: 22 GLQHGTVTLVIDGKPFEVTTLRTDVETDGRRAKVAFSTDWKADAERRDLTINALYADAEG 81 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA+YG D++GL A A Sbjct: 82 EVVDLVGGLADIETRNIRFIGDAATRIAEDHLRILRFFRFFAYYGSGRPDAEGLKACAAA 141 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + LK LS+ER+WSE+ KLL A +P A++ M + EI + + +D + ++ E Sbjct: 142 RSKLKTLSAERVWSELRKLLGADDPGRALLWMRQVAVLTEILPESERWGIDAIPSLVATE 201 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 + W D LLR ++ D + ++A + L L ++ L+ Sbjct: 202 KALGWAPDPLLRLAAIVP-PDAARLEALAARLKLSNAEAATLKAWAITAPVNDELTSAAF 260 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKKPLFPLTGD 368 ++L Y G + +LK+ L + + + ++L + WKKP FP+ G Sbjct: 261 ERLLYRNGADGITTRLKLALGVARGKAESDLDEMARSARLGKLLDQAMTWKKPQFPVNGA 320 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 DV+ G P G +VG +L + +W+ +F + L L++L+ Sbjct: 321 DVIAAGTPSGPRVGELLAVLENQWVEENFASDRAALLARLQQLV 364 >gi|75676806|ref|YP_319227.1| polynucleotide adenylyltransferase region [Nitrobacter winogradskyi Nb-255] gi|74421676|gb|ABA05875.1| polynucleotide adenylyltransferase region [Nitrobacter winogradskyi Nb-255] Length = 418 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 214/416 (51%), Gaps = 16/416 (3%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ W + +LSLL +++ +VGGAVR++LM L V +IDIATT P+ VMR Sbjct: 6 SLCDAGWLKSGPAVRVLSLLGGNGEEARVVGGAVRNALMGLPVVEIDIATTAPPEEVMRR 65 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + R + IPT + +GT+ ++ K ++TTLR D+ T GR A+V F RDW D+ RRDF Sbjct: 66 AAAARIRSIPTGVEHGTVTLVVEGKPVEVTTLREDVETFGRKARVAFGRDWARDAQRRDF 125 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TIN L D G V D+VGGL+D+ R ++FIGD RI EDYLRILRFFR A YG Sbjct: 126 TINGLSVDSGGTVHDHVGGLDDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAYGAGEP 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D DG +A I+ + GL LS+ER+ +EI KLL A + A V M +GG+ +F V Sbjct: 186 DRDGYLACIRGRAGLATLSAERLRAEILKLLLADGAVEAAVAMEDGGLLLAVFGGVAYRG 245 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L+ ++ AE E D + R L + + +A++ L L S + Sbjct: 246 --PLAAMMAAESALELAPDPIRRLAAL-AVSVTEDARRLAQRLRLSNAEAKQLDSMGHRW 302 Query: 303 FNQKTLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + ++ ++ Y G D++M A K L D L V + Sbjct: 303 WRLGSMDEATARRRLYRLGATRFRDRLMQAWSKAGLG--------ADPAPWLNVATLPRR 354 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 W+ P FPL +D + GI G +G++L + W+ F L L + + +A Sbjct: 355 WQPPAFPLKAEDFIVRGIAEGPALGHVLTLAEDAWLAEDFPLDSARLSAIADQTVA 410 >gi|158425129|ref|YP_001526421.1| putative poly(A) polymerase [Azorhizobium caulinodans ORS 571] gi|158332018|dbj|BAF89503.1| putative poly(A) polymerase [Azorhizobium caulinodans ORS 571] Length = 413 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 136/402 (33%), Positives = 209/402 (51%), Gaps = 11/402 (2%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ + L +L+ LN +++ IVGGAVR+ L+ +V ++D+A+T LP+ V+R Sbjct: 5 SLAGAAFLAAPPLRAVLAALNGDGEETRIVGGAVRNGLLGEAVGEVDLASTCLPEEVVRR 64 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 K +PT I++GT+ ++ F++TTLR D+ TDGR+A V F RDW D+ RRDF Sbjct: 65 AEGAGLKSVPTGIAHGTVTVVSAGVPFEVTTLREDVETDGRHAVVRFGRDWARDAARRDF 124 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 T+NALYAD G V D VGGL DL R ++FIGDA RI ED+LRILR FRF A Y + + Sbjct: 125 TLNALYADADGLVFDPVGGLPDLMARRVRFIGDAETRIREDHLRILRLFRFHATYAKGPV 184 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++ L A+ + + GL LS ER+ +E+ KLL A+ + +V M + G+ I V ++S Sbjct: 185 DAEALRAAERLRAGLDQLSRERVRAELVKLLVARRAADTLVEMTDAGLLTRILAGVPDLS 244 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 +E E + + +R + ++ + + + + L L++ Sbjct: 245 GFAHLARLEPELGIQ---PAPMRRLAALAVRIPEDAERLRVRLRLANAEHARLLALAGAR 301 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 LS PE + L + G V L I A + + W P Sbjct: 302 AVGPGLSAPEARALIFALGADVFRDALLIAAARRGGDPSALLAL--------AAAWPVPE 353 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FPLT D++ G+ PG K+G L ++ W+ + F E L Sbjct: 354 FPLTARDLMALGLKPGPKLGAALASAREAWVAADFPHDAETL 395 >gi|85714277|ref|ZP_01045265.1| polynucleotide adenylyltransferase region protein [Nitrobacter sp. Nb-311A] gi|85698724|gb|EAQ36593.1| polynucleotide adenylyltransferase region protein [Nitrobacter sp. Nb-311A] Length = 418 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/412 (35%), Positives = 215/412 (52%), Gaps = 20/412 (4%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + +L+LLN +++ +VGGAVR++LM L V +ID+ATT P+ VMR + R Sbjct: 12 WLKSGPAVRVLALLNGNGEEARVVGGAVRNALMGLPVGEIDVATTAPPEEVMRRAASARI 71 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K IPT I +GT+ ++ + F+ITTLR D+ T GR AKV F RDW D+ RRDFTIN L Sbjct: 72 KSIPTGIEHGTVTLVVEGRPFEITTLREDVETFGRRAKVAFGRDWARDAERRDFTINGLS 131 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D G V D+VGGL+D+ + ++FIGD RI EDYLRILRFFR A YG D +G + Sbjct: 132 VDSDGTVHDHVGGLDDIAAKRVRFIGDPDRRIAEDYLRILRFFRIHAAYGAGEPDRNGHL 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A I+ + GL LS+ER+ +E+ KLL A+ + A+V M +GG+ + V L+ Sbjct: 192 ACIRGRAGLVTLSAERVRAEMLKLLVAEGAVEAVVAMEDGGLLLALLGGVS--YRGPLAA 249 Query: 249 VIEAEQVFEWKIDSLLRFIVLI--SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 ++ AE+ E D + R L +D + I A++ L L S + + Sbjct: 250 MMAAERALELAPDPIRRLAALAVSVTEDARRI---AQRLRLSNAEAKELDSMGHRWWRLG 306 Query: 307 TLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + ++ Y G D++M A + L D L V S W+ P Sbjct: 307 GMDEATARRRLYRLGATRFRDRLMQAWSRAGLG--------ADPAPWLNVASLPQRWQPP 358 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 FPL D V GI G +G++L + W+ F L L + + +A Sbjct: 359 AFPLKAGDFVARGIAEGPALGHVLTIAEDAWLAEDFPLDSARLSAIADQTVA 410 >gi|92118713|ref|YP_578442.1| polynucleotide adenylyltransferase region [Nitrobacter hamburgensis X14] gi|91801607|gb|ABE63982.1| Polynucleotide adenylyltransferase region [Nitrobacter hamburgensis X14] Length = 418 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 147/418 (35%), Positives = 218/418 (52%), Gaps = 20/418 (4%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ + W + +L+LL +++ +VGGAVR++LM L V +IDIATT LP+ V+R Sbjct: 6 SLSEAGWLKSGPAVRVLALLGGNGEEARVVGGAVRNALMGLPVGEIDIATTALPEEVIRR 65 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + R K IPT I +GT+ ++ + F+ITTLR D+ T GR A+V F RDW D+ RRDF Sbjct: 66 AAAARIKSIPTGIEHGTVTLVVDGRPFEITTLREDVETFGRKARVAFGRDWARDAERRDF 125 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TIN L G V D+VGGL+D+ R ++FIGD RI EDYLRILRFFR A YG Sbjct: 126 TINGLSVGSDGTVHDHVGGLDDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAYGAGEP 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D G +A I+ + GL LS+ER+ +E+ KLL A+ + A+V M +GG+ I V Sbjct: 186 DRAGYLACIRGRAGLATLSAERLRAEMLKLLVAEGAVEALVAMEDGGLLLAILGGVA--Y 243 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLI--SWQDKKSILSMAKKFSLPREIRYFLISFFN 300 L+ +I AE+ D + R L +D + + A++ L L S + Sbjct: 244 RGPLAAMIAAERALGLAPDPIRRLAALAVSVTEDARRV---AQRLRLSNAEAKQLDSMGH 300 Query: 301 CNFNQKTLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + ++ ++ Y G D++M A + L D L V + Sbjct: 301 RWWRLGSMDEATARRRLYRLGAPRFRDRLMQAWARAGLG--------ADPGLWLNVATLP 352 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 W+ P FPL +D V GI G +G++L + W+ + F L L + + +A Sbjct: 353 QRWQPPAFPLKAEDFVGRGIAAGPALGHVLTIAEDAWLAADFPLDSAQLSAIADQTVA 410 >gi|302383755|ref|YP_003819578.1| polynucleotide adenylyltransferase region [Brevundimonas subvibrioides ATCC 15264] gi|302194383|gb|ADL01955.1| Polynucleotide adenylyltransferase region [Brevundimonas subvibrioides ATCC 15264] Length = 402 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 136/402 (33%), Positives = 201/402 (50%), Gaps = 28/402 (6%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 +H W S I ++ L C VGG +R++L+ V DIDIAT + P+ M Sbjct: 7 RHDWLTSSATIAVMDALEAAGGPDCARFVGGCIRNALVGRPVDDIDIATRLKPEDAMAAL 66 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 KV+PT +++GT+ + ++ ++ITTLR D+ TDGR A V FT DW D+ RRDF Sbjct: 67 KAAGLKVVPTGLAHGTVTAVSERRPYEITTLRRDVETDGRRAVVAFTDDWAEDAARRDFR 126 Query: 124 INALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALYAD+ G + D G G+ D + F+GD RI EDYLRILRFFRFFA YG Sbjct: 127 LNALYADRTGAIFDPTGQGVEDALAGRVVFVGDPDRRIEEDYLRILRFFRFFAWYGRAAP 186 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A GL LS+ER+ E+ KLL A +P A+ M G+ Sbjct: 187 DAEGLAACAAHADGLARLSAERVSKELLKLLAAPDPRAAVAAMRTAGV------------ 234 Query: 243 LDQLSQVIEAEQVFEWKI----DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 L++L + + + FE + D +LR L+ D + + A+ LPR + L + Sbjct: 235 LERLVPTVPSARAFEAMVALSDDPVLRLSALLP-DDAVVVTAAAQALRLPRVMEARLGAA 293 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + T + ++ L Y G + ++ +L L D VL+ + W Sbjct: 294 AASPLDPAT-PVATLRALTYRLGRQAVLDRL-------IRGLAEADGQGDRSVLTTVADW 345 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 P P+ G D+ K G+ PG G IL + EW+ + F + Sbjct: 346 PVPRMPVGGRDLAKLGVEPGPDTGRILKAFEDEWVAADFPAT 387 >gi|254470240|ref|ZP_05083644.1| poly(A) polymerase protein [Pseudovibrio sp. JE062] gi|211960551|gb|EEA95747.1| poly(A) polymerase protein [Pseudovibrio sp. JE062] Length = 406 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 142/405 (35%), Positives = 224/405 (55%), Gaps = 13/405 (3%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + Q W S + +L + D + VGG VR+SL+ V D+DIA T LPD V+ Sbjct: 1 MTKLQQRGWLDSSAVQRAFDVLEQDGDVARAVGGTVRNSLLGEVVDDVDIACTALPDVVL 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K IPT + +GT+ ++ + ++T LR D+ T GR+A V F RDW D+ RR Sbjct: 61 ARADAAGVKAIPTGVDHGTVTLVIESQPIEVTCLREDVETHGRHATVKFGRDWVKDAQRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFT+NALY D+ G++ D +GGL+D NR ++FIGDA RI EDYLRILRFFRFFA YG+ Sbjct: 121 DFTMNALYVDRYGELFDPLGGLDDCLNRHLRFIGDARARIREDYLRILRFFRFFATYGQG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I++DG A ++ K+GL LS ERI E+ + L A L+A+ M G I + I ++ Sbjct: 181 EINADGYAACVELKEGLSHLSKERITKEVLRTLGAPRVLDALELMEQGVILQLIL--GED 238 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-LSMAKKFSLPREIRYFLISFF 299 + +L+++++ + + E + +LR + + + LS A+K + E+ + Sbjct: 239 AASARLARLLKLDGLPEAANEPVLRLGGVAGAAVSQHLRLSNAQKKRI--EVAAEIAKAL 296 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 +Q E+K L +G ++ + A +L QD + ++L+ +W+ Sbjct: 297 RVTGHQTQ----ELKALLVAHGANAVVD--GVLTAWMNGDL--QDEAVLRELLAFAQNWE 348 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P FPLTG ++ GIP G ++G + +Q W ++ +Q S E+L Sbjct: 349 IPSFPLTGKMMIAGGIPAGPEMGAAMKLAQQIWASADYQCSAEEL 393 >gi|254503107|ref|ZP_05115258.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Labrenzia alexandrii DFL-11] gi|222439178|gb|EEE45857.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Labrenzia alexandrii DFL-11] Length = 415 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 142/406 (34%), Positives = 220/406 (54%), Gaps = 12/406 (2%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + W + + S LN+ D + +VGGA+R++L+ V DIDIATT P VM+ Sbjct: 9 LAAANWLRSPGIQAVFSALNRDNDSARVVGGAIRNTLLGHPVPDIDIATTATPQDVMQRA 68 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + K I T I +GTI +I +++TTLR D+ T GR AKVVF RDWK D+LRRDFT Sbjct: 69 ADAGLKPIGTGIDHGTITVISDGFPYEVTTLREDVETYGRQAKVVFGRDWKKDALRRDFT 128 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +NALY D GK+ D +GGL D R ++FIGD R+ EDYLRILRFFR +A YG+ ++D Sbjct: 129 MNALYVDSLGKLYDPLGGLEDCLARRVRFIGDPDMRLREDYLRILRFFRIYAAYGDGDMD 188 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS- 242 ++GL A ++ + GL+ LS+ERI E+ +L+ A A+ MY+ G+++ + +I Sbjct: 189 AEGLGACLRQRDGLRHLSAERIGHEMRRLVSAPKAAVAVRMMYDCGLWEIATGGLAKIED 248 Query: 243 ---LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISF 298 L L + Q E + L F+ ++ + +A + L E + I + Sbjct: 249 FECLRHLDALAPETQDPEVGLTVLSGFV-------REDVDRVADRLRLSNAERKRMQICW 301 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 +++ +P++K L Y +G + I L + A D + + Sbjct: 302 EAYKTFRQSDQMPDLKTLLYTHGRQGAIDGLLAYWAAFEAQKRLGDQPDFEDAVLKLKSV 361 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + P+FPL G D++ G PG +VG +L ++ W + F LS++DL Sbjct: 362 EVPVFPLKGADMIALGHRPGPQVGKVLKTLEKIWCENGFALSKQDL 407 >gi|217976975|ref|YP_002361122.1| Polynucleotide adenylyltransferase region [Methylocella silvestris BL2] gi|217502351|gb|ACK49760.1| Polynucleotide adenylyltransferase region [Methylocella silvestris BL2] Length = 419 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 140/403 (34%), Positives = 223/403 (55%), Gaps = 29/403 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L I + ++ D++ IVGGAVR++L+ ++DID+ATT P V+ ++IPT Sbjct: 25 LQRIFAAIDIDGDETRIVGGAVRNALLGRKIEDIDLATTAAPPLVIERARAASLRIIPTG 84 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 + +GT+ ++ + F++T+LR D+ TDGR A V F RD+ AD+LRRDFTINAL+ D+ G+ Sbjct: 85 LDHGTVTLLVDGRAFEVTSLREDIETDGRRATVRFGRDFCADALRRDFTINALFLDKSGR 144 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D+VG L D+ R ++FIGD RI EDYLRILRFFRF A YGE ID DGL+A+++A+ Sbjct: 145 LFDFVGALADIEARRVRFIGDPETRIREDYLRILRFFRFSADYGEGPIDGDGLLAAMRAR 204 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 GL LS ER+ +E+ KL+ A+ A+ M G+ + + +L +++E Sbjct: 205 AGLAQLSRERVRAELLKLVAARRAPEAVEAMSGAGLLGPLIASAPNPA--RLRRLVEQ-- 260 Query: 255 VFEWKIDSLLRF--IVLISWQDKKSI-----LSMAKKFSLPREIRYFLISFFNCNFNQKT 307 + + D LLR I L + +D + I LS A++ L R R L + K Sbjct: 261 --DARADPLLRLAAICLETPEDAERIAERLRLSNAERDRLSRAARVMLA------LHGKP 312 Query: 308 LSIPE--IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 + P+ + L + +G + + + A+ ++ +D L+ +P P Sbjct: 313 VPPPKHFLNVLLFRHGRESALDGFTL-AAIGASSSGRRDAIDFLKT------APEPRLPF 365 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G D++ G G+ VG+ L ++ WI + F +E L LL Sbjct: 366 SGADLIARGF-SGRAVGDALAALRERWIEAEFSDDREKLDALL 407 >gi|94498681|ref|ZP_01305232.1| Polynucleotide adenylyltransferase region [Sphingomonas sp. SKA58] gi|94421844|gb|EAT06894.1| Polynucleotide adenylyltransferase region [Sphingomonas sp. SKA58] Length = 403 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 200/398 (50%), Gaps = 21/398 (5%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 VS+ W H L +LS L E + VGGAVRD L+ L V D+DIAT++ P VM Sbjct: 3 VSLPDAPWRHRGGLSALLSALGAAEGTARYVGGAVRDGLLGLPVNDLDIATSLPPVTVME 62 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K +PT I +GT+ + +ITTLR D+ TDGR A + +T DW+ D+ RRD Sbjct: 63 RLQGAGIKTVPTGIEHGTVTAVLADGPVEITTLRRDVSTDGRRATIAYTDDWREDAARRD 122 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINALYAD G + DY GG+ DL R ++FIG+A RI ED+LRILR+FRF A YG+ Sbjct: 123 FTINALYADPLTGAISDYFGGIADLEARRLRFIGEADARIAEDHLRILRYFRFLARYGDN 182 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++D+ A + A L LS ERI E+ KL+ P A+ M GGI + + +V Sbjct: 183 DVDNSAYAACVAAANSLMALSRERIADELLKLMAVAAPGQALRLMIEGGILRPVLPEVAM 242 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI-SFF 299 +D++ +IE E + R L+ D + + L + R L+ + Sbjct: 243 DGVDRVEALIEREAQAALPPSPVRRLAALLP-PDAAVADQVGARLKLSNKARKRLVLALG 301 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 ++ + L + G + I +L + D+ + +L +I W Sbjct: 302 QDGVGERP------RALAFRIGTEAAIDRLLL------------DSARPIDMLDQVIGWT 343 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 P P++G ++ G+ PG V L +Q W++ F Sbjct: 344 PPKLPISGGTLISRGLTPGPDVAKALRQVEQIWVDEDF 381 >gi|197106337|ref|YP_002131714.1| tRNA nucleotidyltransferase/poly(A) polymerase [Phenylobacterium zucineum HLK1] gi|196479757|gb|ACG79285.1| tRNA nucleotidyltransferase/poly(A) polymerase [Phenylobacterium zucineum HLK1] Length = 416 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 207/399 (51%), Gaps = 10/399 (2%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILPDRVM 60 ++ Q W + + ++ L C VGG VR++L+ V D+DIAT + PD V Sbjct: 4 TLGQPAWMTAPEAVAVMDALEAAGGADCARFVGGCVRNTLIGAPVDDVDIATRLTPDEVT 63 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + + +PT I +GT+ + + ++ITTLR D+ TDGR A V FT DW D+ RR Sbjct: 64 AALQAAKIRPVPTGIDHGTVTAVANHRPYEITTLRRDVSTDGRRATVAFTDDWMEDADRR 123 Query: 121 DFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N+LYA + G + D G G+ D + I F+G+ R+ EDYLRILRFFRF+A YG+ Sbjct: 124 DFTLNSLYARRDGTIFDPTGHGVADAKAGRIVFMGEPAQRLAEDYLRILRFFRFYAWYGK 183 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D+ + A AK ++ L++ERI E+ KLL A +P A+ M G+ I Sbjct: 184 GEPDAAAVAACAAAKDNIQSLAAERISKELLKLLAADDPRAAVRLMDGAGVLPLILGTAP 243 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 ++ + IE+EQ+FE +++LR L+ D+ + +A++ L R +++ Sbjct: 244 DLERFEGLVAIESEQLFE--TEAVLRLAALLP-ADQLAAAKLAERLRLSNADRDRIVAAL 300 Query: 300 NCNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + K+ P EI++ Y G + K+ A + ++ + W Sbjct: 301 ATSPALKSWMSPREIRRAVYREGQAAFRDRAKLAWARAPESAAASQWRGMIALAE---GW 357 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 P FPLTGDDV+K G P G VG +L + WI+ F Sbjct: 358 SPPAFPLTGDDVMKAGAPKGPMVGQVLREVEDWWIDHDF 396 >gi|299134641|ref|ZP_07027833.1| Polynucleotide adenylyltransferase region [Afipia sp. 1NLS2] gi|298590451|gb|EFI50654.1| Polynucleotide adenylyltransferase region [Afipia sp. 1NLS2] Length = 422 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/406 (33%), Positives = 211/406 (51%), Gaps = 22/406 (5%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + W LSLLN +++ IVGGAVR++L+NL V +ID+ATT LP+ V+R Sbjct: 9 TATIMAAWLTSGPAARALSLLNANGEEARIVGGAVRNALLNLPVGEIDVATTALPEEVVR 68 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 R K +PT + +GT+ ++ ++TTLR D+ T GR AKV F RDW D+ RRD Sbjct: 69 RARAARIKCVPTGLEHGTVTLVIEGTPIEVTTLREDIETFGRKAKVAFGRDWVRDAERRD 128 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTIN L G V D+VGGL D+ R ++FIGD RI ED+LRILRFFR A YG+ Sbjct: 129 FTINGLSLSADGIVHDHVGGLADIEARRVRFIGDPARRISEDFLRILRFFRIHAAYGQGE 188 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + A I A+ GL LS+ER+ E+ KL+ AK +A++ M +GG+ I V Sbjct: 189 PDRAAMEACIAARDGLASLSAERLRMEMLKLVVAKGAADALIEMEDGGLLGRITAGVSYH 248 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 + ++EAE++ + D++ R L ++ + LS+ + S R + Sbjct: 249 G--PFANMVEAERMLGFTADAIRRLGALTVATPEDAKRLSVRLRLSNAETKRLDSMGHRW 306 Query: 301 CNFNQKTLSIPEIKKLFYL----YGDKVMIAKLKI---FLALHYNNLTHQDTCFILQVLS 353 + I ++++ L Y ++VM+A + F A + L + Sbjct: 307 WRMREMDEEIAR-RRVYRLGPDRYTERVMLAWARAGQDFAAPRWRELA-----------T 354 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399 W P+FPL D + G+ G +G++L + W+ ++F L Sbjct: 355 LTRRWSAPVFPLKAADFIARGLKEGPALGHVLTLAEDAWLAANFPL 400 >gi|304570787|ref|YP_002515788.2| poly(A) polymerase/tRNA-nucleotidyltransferase [Caulobacter crescentus NA1000] Length = 417 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 211/418 (50%), Gaps = 15/418 (3%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 I W + +++ L C VGG VR++LM V DIDIATT+ PD V+ Sbjct: 6 IGNAPWIALPETKAVIAALEARGYAGCARFVGGCVRNTLMGKPVDDIDIATTLTPDLVID 65 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + IPT + +GTI + + ++ITTLR D+ TDGR A V FT+DW D+ RRD Sbjct: 66 ALEQAGLRAIPTGVDHGTITAVSGGRPYEITTLRKDVSTDGRRAVVAFTQDWNQDAERRD 125 Query: 122 FTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 F NALYAD G+V D G G+ D + F+GD RI EDYLRILRFFRF A YG Sbjct: 126 FRFNALYADTDGRVYDPTGEGIRDAHEGRVVFVGDPMTRIREDYLRILRFFRFQAWYGRG 185 Query: 181 NIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D GL A+ KA KG+ ++ER E+ K+L A +P A M + I V+ Sbjct: 186 EPDQKGL-AACKALKGMVSGRAAERTQKELMKMLAADDPRPAFRLMAATSVLSSILPSVK 244 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 ++ + IE EQ+FE D LR LI D K +A++ LP +R L+ Sbjct: 245 SLARFEALVGIETEQLFE--NDPDLRLAALIP-DDPKVAEQLAERLRLPNNVRDRLVEAV 301 Query: 300 NCNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 N + P E ++ Y G + ++K+ A + T +L + W Sbjct: 302 GKNPRVVSWMSPREARRAVYGLGTRTFCDRIKLAWAGSGRDSTAPQWRALLALAE---TW 358 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P FPL+G++V+K G+P G VG ++ + WI+ F ED + +L A +Q Sbjct: 359 NPPAFPLSGEEVMKAGVPKGPMVGEVMREIELWWIDQDF---IEDKFSAIERLKAVAQ 413 >gi|16124663|ref|NP_419227.1| poly A polymerase family protein [Caulobacter crescentus CB15] gi|13421569|gb|AAK22395.1| poly A polymerase family protein [Caulobacter crescentus CB15] gi|220962524|gb|ACL93880.1| poly(A) polymerase/tRNA-nucleotidyltransferase [Caulobacter crescentus NA1000] Length = 413 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 211/418 (50%), Gaps = 15/418 (3%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 I W + +++ L C VGG VR++LM V DIDIATT+ PD V+ Sbjct: 2 IGNAPWIALPETKAVIAALEARGYAGCARFVGGCVRNTLMGKPVDDIDIATTLTPDLVID 61 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + IPT + +GTI + + ++ITTLR D+ TDGR A V FT+DW D+ RRD Sbjct: 62 ALEQAGLRAIPTGVDHGTITAVSGGRPYEITTLRKDVSTDGRRAVVAFTQDWNQDAERRD 121 Query: 122 FTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 F NALYAD G+V D G G+ D + F+GD RI EDYLRILRFFRF A YG Sbjct: 122 FRFNALYADTDGRVYDPTGEGIRDAHEGRVVFVGDPMTRIREDYLRILRFFRFQAWYGRG 181 Query: 181 NIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D GL A+ KA KG+ ++ER E+ K+L A +P A M + I V+ Sbjct: 182 EPDQKGL-AACKALKGMVSGRAAERTQKELMKMLAADDPRPAFRLMAATSVLSSILPSVK 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 ++ + IE EQ+FE D LR LI D K +A++ LP +R L+ Sbjct: 241 SLARFEALVGIETEQLFE--NDPDLRLAALIP-DDPKVAEQLAERLRLPNNVRDRLVEAV 297 Query: 300 NCNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 N + P E ++ Y G + ++K+ A + T +L + W Sbjct: 298 GKNPRVVSWMSPREARRAVYGLGTRTFCDRIKLAWAGSGRDSTAPQWRALLALAE---TW 354 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P FPL+G++V+K G+P G VG ++ + WI+ F ED + +L A +Q Sbjct: 355 NPPAFPLSGEEVMKAGVPKGPMVGEVMREIELWWIDQDF---IEDKFSAIERLKAVAQ 409 >gi|209886120|ref|YP_002289977.1| polynucleotide adenylyltransferase region [Oligotropha carboxidovorans OM5] gi|209874316|gb|ACI94112.1| polynucleotide adenylyltransferase region [Oligotropha carboxidovorans OM5] Length = 422 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 137/413 (33%), Positives = 214/413 (51%), Gaps = 26/413 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +++ W +L+LLN +++ +VGGAVR++L+NL V +IDIATT LP+ V+R Sbjct: 9 AAVIAGAWLTSGPAARVLALLNTEGEEARVVGGAVRNALLNLPVGEIDIATTALPEEVVR 68 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 R K +PT + +GT+ ++ ++TTLR D+ T GR AKV F RDW D+ RRD Sbjct: 69 RARVARIKCVPTGLEHGTVTLVIEGTPVEVTTLREDIETFGRKAKVAFGRDWARDAERRD 128 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTIN L G V DYVGGL D+ R ++FIGD RI ED+LRILRFFR A YGE Sbjct: 129 FTINGLSLSTDGTVHDYVGGLPDIAARRVRFIGDPARRIGEDFLRILRFFRIHAAYGEGE 188 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D A I A+ GL +LS+ER+ E+ KL+ A+ +A+V M + G+ I V Sbjct: 189 PDQAARDACIAARDGLDLLSAERLRMEMLKLVVARGAADALVAMDDAGLLGRITAGVSYH 248 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRF--IVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + ++EAE++ + D + R + + + +D K ++ + L L S Sbjct: 249 G--PFAGMVEAERMLGFVADPIRRLGALTVATPEDAK---RLSTRLRLSNAETKRLDSMG 303 Query: 300 NCNFNQKTLSIPEIKKLFYLYG-----DKVMIAKLKI---FLALHYNNLTHQDTCFILQV 351 + + + + ++ Y G ++VM+A + F A + +L Sbjct: 304 HRWWRMRGMDEEVARRRVYRLGADRYTERVMLAWARSGQDFSAPRWRDLA---------- 353 Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + W P+FPL D + G+ G +G++L + W+ ++F L L Sbjct: 354 -TLTRRWTAPVFPLKAADFIARGLKEGPALGHVLTLAEDAWLAANFPLDAASL 405 >gi|260752500|ref|YP_003225393.1| polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551863|gb|ACV74809.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 406 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 148/401 (36%), Positives = 231/401 (57%), Gaps = 20/401 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + KW H L +++ L G+ VGG+VRD+L+ L V DID AT P++ M Sbjct: 3 VFLPDQKWQHQEGLSDLIKALG-GDSMIRFVGGSVRDTLLGLPVNDIDCATRHHPEKTME 61 Query: 62 IFSKTRYKVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + +K IPT I +GTI ++ K +IT+LR D+ TDGR+A + ++ +W+ D+ RR Sbjct: 62 LIRSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRR 121 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYA+ + G V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ Sbjct: 122 DFTINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQ 181 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 N D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++ Sbjct: 182 NNPDPEALAACIKRANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEIT 241 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+ Sbjct: 242 ADSILPLQRLVERERLYHLSGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALL 300 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 +K LS L + G + IA+ FL L+ +D + ++ + +W+ Sbjct: 301 TAE-EEKPLS------LAWAIGKEEAIAR---FL------LSDRDEATVNSAIALLKNWE 344 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 +P+FPL G D++ G+P G V IL + ++ W+ ++F S Sbjct: 345 RPVFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNS 385 >gi|56551952|ref|YP_162791.1| polynucleotide adenylyltransferase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543526|gb|AAV89680.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis ZM4] Length = 406 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 148/401 (36%), Positives = 231/401 (57%), Gaps = 20/401 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + KW H L +++ L G+ VGG+VRD+L+ L V DID AT P++ M Sbjct: 3 VFLPDQKWQHQEGLSDLIKALG-GDSMIRFVGGSVRDTLLGLPVNDIDCATRHHPEKTME 61 Query: 62 IFSKTRYKVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + +K IPT I +GTI ++ K +IT+LR D+ TDGR+A + ++ +W+ D+ RR Sbjct: 62 LIRSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRR 121 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYA+ + G V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ Sbjct: 122 DFTINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQ 181 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 N D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++ Sbjct: 182 NNPDPEALAACIKHANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEIT 241 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+ Sbjct: 242 ADSILPLQRLVERERLYHLSGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALL 300 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 +K LS L + G + IA+ FL L+ +D + ++ + +W+ Sbjct: 301 TAE-EEKPLS------LAWAIGKEEAIAR---FL------LSDRDEATVNSAIALLKNWE 344 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 +P+FPL G D++ G+P G V IL + ++ W+ ++F S Sbjct: 345 RPVFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNS 385 >gi|300024044|ref|YP_003756655.1| polynucleotide adenylyltransferase region [Hyphomicrobium denitrificans ATCC 51888] gi|299525865|gb|ADJ24334.1| Polynucleotide adenylyltransferase region [Hyphomicrobium denitrificans ATCC 51888] Length = 418 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 200/391 (51%), Gaps = 9/391 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W L N+ + + + + +VGGA+R++L++ V D+D+AT +PD V+ + + Sbjct: 15 WLDAKPLRNVFAAFDAAQAEVRVVGGAIRNTLIDRPVIDVDLATPAVPDAVIELARRAGL 74 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 PT I +GT+ ++ F++TTLR D+ TDGR+A V FT+ W D+ RRDFTINALY Sbjct: 75 GAHPTGIEHGTVTLVSDGVGFEVTTLRRDIETDGRHATVAFTQSWDEDAQRRDFTINALY 134 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G + D +GG+ DLR R ++FIGD RI EDYLRILRFFRF A YG+ ++D DGL Sbjct: 135 CAPDGAIYDPMGGIADLRRRRVRFIGDGEARIREDYLRILRFFRFSAEYGKGHLDVDGLA 194 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A+IK K+GL L++ERI +E KLL A + MY I + + ++L++ Sbjct: 195 AAIKLKQGLSKLAAERIRAEFLKLLAAPYAAEVVRAMYESEILALVLPGT--LHPERLAR 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF--FNCNFNQK 306 + E D + L + + +A++ L L S F+ + Sbjct: 253 LQAIEAGLGQPPDVICGLAAL-AVSGPGDVDELAQRLRLSNSEASALRSAASFDPGLDPA 311 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 PE LY + +A +N D + + L + W P P + Sbjct: 312 Q---PEAAACAALYRLGSEAFRRAAVVAWARSNAAATDAAWRKRALL-VDRWSPPKMPFS 367 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 G DV+ GIP G VG IL + WI ++F Sbjct: 368 GSDVLALGIPAGPSVGEILRAFETWWIAAAF 398 >gi|241761961|ref|ZP_04760046.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373641|gb|EER63213.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 406 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 148/401 (36%), Positives = 231/401 (57%), Gaps = 20/401 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + KW H L +++ L G+ VGG+VRD+L+ L V DID AT P++ M Sbjct: 3 VFLPDQKWQHQEGLSDLIKALG-GDSMIRFVGGSVRDTLLGLPVNDIDCATRHHPEKTME 61 Query: 62 IFSKTRYKVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + +K IPT I +GTI ++ K +IT+LR D+ TDGR+A + ++ +W+ D+ RR Sbjct: 62 LIRSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRR 121 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYA+ + G V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ Sbjct: 122 DFTINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQ 181 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 N D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++ Sbjct: 182 NNPDPEALAACIKRANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEIT 241 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+ Sbjct: 242 ADSILPLQRLVERERLYHISGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALL 300 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 +K LS L + G + IA+ FL L+ +D + ++ + +W+ Sbjct: 301 TAE-EEKPLS------LAWAIGKEEAIAR---FL------LSDRDEATVNSAIALLKNWE 344 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 +P+FPL G D++ G+P G V IL + ++ W+ ++F S Sbjct: 345 RPVFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNS 385 >gi|83859591|ref|ZP_00953111.1| probable poly(A) polymerase [Oceanicaulis alexandrii HTCC2633] gi|83851950|gb|EAP89804.1| probable poly(A) polymerase [Oceanicaulis alexandrii HTCC2633] Length = 408 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/405 (32%), Positives = 206/405 (50%), Gaps = 18/405 (4%) Query: 6 QHKWFHDSDLINILSLLNKGE-DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +H + D +L ++ GE D++ IVGGAVR++L V+D+DIAT + P + Sbjct: 7 EHAFLSAPDTRAVLDAISPGETDRARIVGGAVRNALQGAPVEDVDIATQLTPQETLDALK 66 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT + +GTI + + K F+ITTLR D+ TDGR A V FT DW D+ RRDF + Sbjct: 67 AAGIKAIPTGLDHGTITAVIKGKPFEITTLRKDVSTDGRRAVVAFTTDWAIDASRRDFRL 126 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NA+YA + G + D G+ D + FIG+A R+ ED LRILRF+RF A YG +D Sbjct: 127 NAIYARRDGSLFDPYDGVADALAHRVVFIGEADERLAEDVLRILRFYRFNAWYGSA-LDP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +G A ++A GLK L+ ER+W E+ LL A +P + M G +F+ ++ + + L+ Sbjct: 186 EGHAACVRAAPGLKALARERVWKELKTLLAAPDPGPVVKAMQEGHVFEPVW--PERLDLN 243 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 L +I A++ D+L+R L D ++ S+ + LI+ + Sbjct: 244 LLLSIINADRGKGRAPDTLIRAAALCG-GDVTTVRSLGHQMKASNAETDRLIAMCAPAAD 302 Query: 305 QKTLSIP-----EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 P ++ Y G + ++++ A L HW+ Sbjct: 303 GADSVRPGAEARARRRALYTLGAQTFSDRMRLAEARGEGEAD--------ADLDAAAHWR 354 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 KP P+TG D++ G PG ++G ++ + WI+S F L +E L Sbjct: 355 KPDLPVTGRDLIALGFEPGPQLGAVMKQLEARWIDSDFNLDRETL 399 >gi|316932733|ref|YP_004107715.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris DX-1] gi|315600447|gb|ADU42982.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris DX-1] Length = 418 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/403 (33%), Positives = 202/403 (50%), Gaps = 20/403 (4%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W H +L+LLN +++ +VGGAVR++L L + D+DIATT LPD V+R Sbjct: 12 WLHTGPAARVLALLNGDGEEARVVGGAVRNALFGLPIGDVDIATTALPDEVVRRAKAAGI 71 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+ RRDFTINAL Sbjct: 72 KAVPTGIEHGTVTLVLEGHGFEITTLREDVETFGRKAKVAFGRDWARDAQRRDFTINALS 131 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A YG + D D + Sbjct: 132 MSADGTVHDYVGGLADIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGAGSPDRDAYL 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A I+ + GL LS+ER+ E+ KL+ A ++V M + + + L + Sbjct: 192 ACIRGRDGLSTLSAERLRMEMLKLMVAGGAEASVVAMAD--GGLLLAVLGGVAYLGAFAA 249 Query: 249 VIEAEQVFEWKIDSLLRF--IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 +I AE+ + D + R + + +D K +A++ L L S + + Sbjct: 250 MIGAERALGLEADPVRRLGALAVAVTEDAK---RLAQRLRLSNAEAKRLDSMGHRWWRLA 306 Query: 307 TLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + ++ Y G D++M+A + D +++ W+ P Sbjct: 307 GMDEATARRRLYRLGEARFHDRMMLAWARAGRG--------ADPAPWHALIALPERWQAP 358 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FPL D + G G +G++L + W+ + F L L Sbjct: 359 AFPLKAADFLARGFAAGPALGHVLTLAEDAWLAADFPLEPAAL 401 >gi|167644663|ref|YP_001682326.1| polynucleotide adenylyltransferase region [Caulobacter sp. K31] gi|167347093|gb|ABZ69828.1| Polynucleotide adenylyltransferase region [Caulobacter sp. K31] Length = 417 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/388 (36%), Positives = 207/388 (53%), Gaps = 13/388 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR++LM + DIDIATT+ PD+V+ + + IPT + +GT+ + + ++I Sbjct: 36 VGGCVRNTLMGKPIDDIDIATTLTPDQVIEALGEAGLRAIPTGVDHGTVTALSGGRPYEI 95 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRNRTI 150 TTLR D+ TDGR A V FT+DW D+ RRDF NALY D QG++ D G G+ND R + Sbjct: 96 TTLRRDVETDGRRAVVSFTQDWDQDAERRDFRFNALYVDLQGRLYDPTGEGVNDAREGRV 155 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEI 209 F+GD RI EDYLRILRFFRF A YG+ D L A+ KA KG+ + ++ER E+ Sbjct: 156 VFVGDPMTRIREDYLRILRFFRFHAWYGKGEADQKAL-AACKALKGMVEGRAAERTQKEL 214 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 KLL A++P ++ M + I V+ ++ + IE EQ+FE D LR L Sbjct: 215 LKLLAAEDPRPSLRLMAATSVLSSILPFVKSLARFEGLMAIETEQLFE--NDPELRLAAL 272 Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP-EIKKLFYLYGDKVMIAK 328 I D K MA++ L ++ L+ + + P E ++ Y G K + Sbjct: 273 IP-DDPKIAEQMAERLRLSNALKERLVEAVGKSPRIVSWMSPRECRRAVYALGLKTFSDR 331 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 +K+ A T +L + W P FPLTG+D++K G+P G VG ++ Sbjct: 332 VKLAWAGAGRTATTPQWRGLLALGE---SWSPPAFPLTGEDILKAGVPKGPMVGEVMREV 388 Query: 389 KQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + WI+ F ED + +L A +Q Sbjct: 389 EIWWIDQDF---IEDKFSAIERLKAVAQ 413 >gi|307944158|ref|ZP_07659499.1| tRNA-nucleotidyltransferase 1 [Roseibium sp. TrichSKD4] gi|307772504|gb|EFO31724.1| tRNA-nucleotidyltransferase 1 [Roseibium sp. TrichSKD4] Length = 416 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 135/407 (33%), Positives = 217/407 (53%), Gaps = 9/407 (2%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + W H + L + L K ++ VGGAVR+SL+++ V D+DIATT P+ V+ Sbjct: 8 IDLSGQDWLHANGLQRLFDALEKAGAEARAVGGAVRNSLVSVPVVDVDIATTARPEDVIA 67 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + K IPT + +GT+ ++ + +++TTLR D+ T GR AKVVF DW D+ RRD Sbjct: 68 AVNAAGLKPIPTGVDHGTVTVLSEGEAYEVTTLRRDVETFGRQAKVVFGSDWIEDAKRRD 127 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NA+YAD+ G + D +GG+ D ++FIG+ RI EDYLRILRFFR A YG+ Sbjct: 128 FTLNAIYADRAGTLFDPLGGVPDCLAGRVRFIGNPEGRIREDYLRILRFFRIHATYGKGK 187 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D +GL A + ++GL+ LSSERI +E+ +LL A + + M GI ++ L Q+ Sbjct: 188 LDPEGLAACARLQEGLQTLSSERIGAEMKRLLPASGGSSVVPEMAQKGILHQVLL--QDA 245 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-REIRYFLISFFN 300 D ++ + I + LI + ++ +A++ L RE+ + L S Sbjct: 246 DTDVYCRLHGYAAIRNTPIPFTTYLVALIGLSE-STLRKVAERLRLSNRELDHML-SVAK 303 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH-YNNLTHQDTCFILQ--VLSDIIH 357 Q T S P I LY + + FL+ + +++ D Q LS + + Sbjct: 304 AAETQST-SNPPIDPRLQLYHFGAVASLQAAFLSFSAHEHVSSADGLSDCQEAFLSALEN 362 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + P+FP+ G D++ G+ PG ++G L + WI + + +L Sbjct: 363 EELPVFPIQGKDLISAGMAPGPEIGAALKKLENIWIAGGLKQGRSEL 409 >gi|312116357|ref|YP_004013953.1| polynucleotide adenylyltransferase region [Rhodomicrobium vannielii ATCC 17100] gi|311221486|gb|ADP72854.1| Polynucleotide adenylyltransferase region [Rhodomicrobium vannielii ATCC 17100] Length = 420 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 135/407 (33%), Positives = 218/407 (53%), Gaps = 7/407 (1%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V++ WF ++ + LN+ + VGGAVR++L+ V ++D ATT PD +R Sbjct: 7 VTVADAAWFRAPEVRAVFDCLNREGFEVRAVGGAVRNALLEEPVLEVDFATTAKPDDTLR 66 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + K +PT I +GTI ++ F++TTLR D+ TDGR A V F DW D+ RRD Sbjct: 67 LAAAAGIKTVPTGIDHGTITLVVDGVPFEVTTLRRDVDTDGRRATVAFGDDWAEDARRRD 126 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYAD G V D + GL DL R ++F+GDA RI EDYLRILRFFRF A Y + + Sbjct: 127 FTLNALYADATGAVHDPLDGLPDLLARRVRFVGDADTRIREDYLRILRFFRFSADYAKGD 186 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D+DGL A+I+ ++GLK LS+ER+ +E+ ++L +AI M G+ + + Sbjct: 187 FDADGLAAAIRERRGLKRLSAERVRAEMLRILVTVRAPDAIRIMDESGLLLIVLGGIARR 246 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN- 300 S + ++ E + D + R L + ++ + +A K L + R L+ + Sbjct: 247 S--RFDRIAAIEAQLKLMPDPMYRLAALSIFVEEDA-ERLAGKLRLSNDERNDLMGLASV 303 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + + L+ +++ L Y G + + + I A + F ++ + W++ Sbjct: 304 APWFRAPLAKRDLETLLYRIGARTYLGSVLIGWAASGAPIDDAAWRFAAELPRE---WQR 360 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 P FP+ G D++ G PG +G L + ++ +I S F L ++ L L Sbjct: 361 PKFPVNGADLLNEGWLPGPGLGAHLRYLEERFIASGFTLDRKTLLAL 407 >gi|90422439|ref|YP_530809.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisB18] gi|90104453|gb|ABD86490.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisB18] Length = 417 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 141/411 (34%), Positives = 207/411 (50%), Gaps = 34/411 (8%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L+LLN ++ +VGGAVR+ L+ L DIDIATT LPD VMR + K +PT I Sbjct: 19 RVLALLNGDGAEARVVGGAVRNLLIGLPTGDIDIATTALPDEVMRRAQQAGIKSVPTGIE 78 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 +GT+ ++ + F+ITTLR D+ T GR AKV F DW D+ RRDFT+NAL G + Sbjct: 79 HGTVTLVVDGEPFEITTLREDVETFGRKAKVAFGEDWAVDAQRRDFTMNALSVSLDGTLH 138 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 DYVGGL+D+ R ++FIGD RI EDYLRILRFFR A YGE D DG +A I+ + G Sbjct: 139 DYVGGLDDVEARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGEGAPDRDGSLACIRGRDG 198 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L LS+ER+ E+ KL+ A A+ M GG+ +F V + +I AE+ Sbjct: 199 LASLSAERMRMEMLKLMVAPGACAAVAAMGEGGLLLRVFGGVAFHG--PFAAMIAAERRL 256 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---------FNQKT 307 + D++ R L +A R + +S C + + Sbjct: 257 DLAPDAIRRL----------GALGVAVTEDARRLTQRLRLSNVECKRLDSMGHRWWRLRG 306 Query: 308 LSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + K+ Y G D++M+A + D L +++ W+ P Sbjct: 307 MDQATAKRRLYRLGQARYHDRMMLAWARAG--------QDADPTPWLDLVTLPQRWQAPA 358 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 FPL D + G+ G +G+I+ + W+ S F L + L+ + + +A Sbjct: 359 FPLKAADFIARGVAQGPALGHIIALAEDAWLASDFALDEAALNGIADQTVA 409 >gi|332186789|ref|ZP_08388531.1| poly A polymerase head domain protein [Sphingomonas sp. S17] gi|332013122|gb|EGI55185.1| poly A polymerase head domain protein [Sphingomonas sp. S17] Length = 383 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 136/391 (34%), Positives = 196/391 (50%), Gaps = 32/391 (8%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 W DLI + + L ++ VGGAVRDSL+ +V DID+AT + P+ V+ + Sbjct: 7 PWADRRDLIALAATL-----EARFVGGAVRDSLLGHAVADIDLATPLSPETVIARVRDSG 61 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 +K +PT I++GTI + ++TTLR D+ TDGR+A V FT DW+ D+ RRDFT+NAL Sbjct: 62 FKPVPTGIAHGTITAVLPDGPVEVTTLRRDVSTDGRHAVVAFTDDWREDAARRDFTMNAL 121 Query: 128 YADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 YAD + G + DY GGL+DL+ ++FIGD RI ED+LRILRFFRF A +G+ ID G Sbjct: 122 YADPETGALFDYFGGLDDLKAGRVRFIGDPLQRIAEDHLRILRFFRFHARFGQA-IDEAG 180 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A L LS ERI +E+ KLL A + I M GI + + ++ ++L Sbjct: 181 LAACTARANDLMALSRERIAAELLKLLVAPGAVPVIALMVERGILRAVLPEIDAAGAERL 240 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + + E EQ D + R L+ Q +++ + L R LI+ + Sbjct: 241 AMLAEREQAAGIAADPIRRLAALLPPQTAEAV---GARLKLSNVDRKRLIAATAGPGEEG 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + L Y G + I +L + + I W P PLT Sbjct: 298 P------RALAYRVGIEGAIDRL----------------LLAGETVEAIRDWTPPSLPLT 335 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 G +V GI G +V +L + WI F Sbjct: 336 GGALVARGIGKGPEVARLLRQVETRWIAEGF 366 >gi|295687827|ref|YP_003591520.1| Polynucleotide adenylyltransferase region [Caulobacter segnis ATCC 21756] gi|295429730|gb|ADG08902.1| Polynucleotide adenylyltransferase region [Caulobacter segnis ATCC 21756] Length = 416 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 206/419 (49%), Gaps = 14/419 (3%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILPDRV 59 VSI W S +++ L C VGG VR++LM V DIDIATT+ PD+ Sbjct: 4 VSIGAPPWMAASQTRAVIAALEAKGGVGCARFVGGCVRNTLMGKPVDDIDIATTLTPDQT 63 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 + + + +PT + +GT+ + + F++TTLR D+ TDGR A V FT DW D+ R Sbjct: 64 IEAIEQAGLRAVPTGVEHGTVTALSGGRPFEVTTLRRDVATDGRRAVVAFTHDWGEDAQR 123 Query: 120 RDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDF NALYAD +G V D VG G+ D R + F+GD RI EDYLRILRFFRF A YG Sbjct: 124 RDFRFNALYADAEGTVYDPVGQGVEDARAGRVVFVGDPMTRIREDYLRILRFFRFQAWYG 183 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 D++ L A K L ++ERI E+ K L A +P A M G+ I V Sbjct: 184 RLEPDAEALAACAALKDMLLGGTAERIQKELMKTLAADDPRPAFRLMAATGVLAAILPTV 243 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + ++ IE EQ+FE D +LR L D ++A++ L R ++ Sbjct: 244 ESLARFDALVAIETEQLFE--TDPVLRLAALTP--DDNGAKALAERLRLSNADRDRIVEA 299 Query: 299 FNCNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + P E ++ Y G ++K+ A T +L + Sbjct: 300 KTPGPTIVSWMSPREARRAIYALGSSAFRDQVKLAWAGAERASTASQWRALLALAE---T 356 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 W P PLTG++++K G+P G VG +L + WI+ F ED ++ +L A +Q Sbjct: 357 WTPPTLPLTGEEIMKAGVPKGPMVGKVLREVELWWIDQDF---IEDKFSVIERLKAVAQ 412 >gi|39934263|ref|NP_946539.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris CGA009] gi|39648111|emb|CAE26631.1| possible poly(A) polymerase [Rhodopseudomonas palustris CGA009] Length = 418 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 134/399 (33%), Positives = 200/399 (50%), Gaps = 10/399 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W H +L+LLN +++ +VGGAVR++L+ + D+DIATT LPD V+R Sbjct: 12 WLHTGPAARVLALLNGDGEEARVVGGAVRNALLGEPIGDVDIATTALPDEVIRRAKAGGI 71 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW+ D+ RRDFTINAL Sbjct: 72 KAVPTGIEHGTVTLVVEGHGFEITTLREDVETFGRKAKVAFGRDWERDAQRRDFTINALS 131 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A YG D D + Sbjct: 132 MSADGTVHDYVGGLVDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGAGEPDRDAYL 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A I+ + GL LS+ER E+ KL+ A ++V M + + + L + Sbjct: 192 ACIRGRGGLAALSAERQRMEMLKLMIADGAEASVVAMAD--GGLLLAVLGGVAYLGAFAA 249 Query: 249 VIEAEQVFEWKIDSLLRF--IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 +I AE+ + D + R + + +D K +A++ L L S + + Sbjct: 250 MIGAERALGLEADPVRRLGALAVAVTEDAK---RLAQRLRLSNVEAKRLDSMGHRWWRLA 306 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + ++ Y G+ ++ + A D Q+++ W+ P FPL Sbjct: 307 GMDEATARRRLYRLGESRFHDRMMLAWARAGRG---ADPAPWRQLIALPERWQAPTFPLK 363 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 D + G G +G++L + W+ + F L L Sbjct: 364 AADFLARGFAAGPALGHVLTLAEDAWLAADFPLDPAALR 402 >gi|148253774|ref|YP_001238359.1| putative poly(A) polymerase [Bradyrhizobium sp. BTAi1] gi|146405947|gb|ABQ34453.1| putative poly(A) polymerase [Bradyrhizobium sp. BTAi1] Length = 417 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 133/406 (32%), Positives = 201/406 (49%), Gaps = 12/406 (2%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V ++ W +L+LLN +++ +VGGAVR++L+ + + DIDIATT LP V+R Sbjct: 4 VRVLSAPWLSSGPAARVLALLNSDGEEARVVGGAVRNALLGIDIGDIDIATTALPAEVIR 63 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K +PT I +GT+ ++ F++TTLR D T GR AKV F RDW D+ RRD Sbjct: 64 RAKAASIKSVPTGIDHGTVTLVLEGHPFEVTTLREDTETFGRKAKVEFGRDWIGDAHRRD 123 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTINAL G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR + +G Sbjct: 124 FTINALSVGPDGVVHDHVGGLADIAARRVRFIGDPAQRIAEDYLRILRFFRIHSAFGHGV 183 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D DG +A I + GL LS+ER+ E+ KLL + + A+ M +GG+ I V Sbjct: 184 PDRDGYLACIAGRAGLATLSAERVRMEMLKLLVTEGAVGAVTAMTDGGLLTAILGGVA-- 241 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 L + +IE E+ S +R + ++ + + + L L + Sbjct: 242 YLGPFAAMIEIERTLALP-PSAVRRLAALAVAVTEDARRLGARLKLSNAETKALDGMGHR 300 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHW 358 + T ++L Y G+ V +L + A + Q + + Q + Sbjct: 301 WWRLATADEARARRLLYRLGETVYRDRLMLGWARAGRDHDAQRWRELALLPQ------RF 354 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P PL D + G+ G +G++L + W+ + F L + L Sbjct: 355 TPPKLPLKAADFIARGVAEGPLLGHVLTLAEDAWLAADFPLDEASL 400 >gi|192289790|ref|YP_001990395.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris TIE-1] gi|192283539|gb|ACE99919.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris TIE-1] Length = 418 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 134/398 (33%), Positives = 200/398 (50%), Gaps = 8/398 (2%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W H +L+LLN +++ +VGGAVR++L+ + D+DIATT LPD V+R Sbjct: 12 WLHTGPAARVLALLNGDGEEARVVGGAVRNALLGEPIGDVDIATTALPDEVIRRAKAGGI 71 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW+ D+ RRDFTINAL Sbjct: 72 KAVPTGIEHGTVTLVVEGHGFEITTLREDVETFGRKAKVAFGRDWERDAQRRDFTINALS 131 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A YG D D + Sbjct: 132 MSADGTVHDYVGGLVDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGAGEPDRDAYL 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A I+ + GL LS+ER E+ KL+ A ++V M + + + L + Sbjct: 192 ACIRGRGGLAALSAERQRMEMLKLMIAGGAEASVVAMAD--GGLLLAVLGGVAYLGAFAA 249 Query: 249 VIEAEQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 +I AE+ + D + R L ++ + L++ + S R L S + + Sbjct: 250 MIGAERALGLEADPVRRLGALAVAVTEDAKRLALRLRLSNVEAKR--LDSMGHRWWRLAG 307 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 + ++ Y G+ ++ + A D Q+++ W+ P FPL Sbjct: 308 MDEATARRRLYRLGEARFHDRMMLAWARAGRG---ADPAPWRQLIALPQRWQAPTFPLKA 364 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 D + G G +G++L + W+ + F L L Sbjct: 365 ADFLARGFAAGPALGHVLTLAEDAWLAADFPLDPAALR 402 >gi|154246887|ref|YP_001417845.1| polynucleotide adenylyltransferase region [Xanthobacter autotrophicus Py2] gi|154160972|gb|ABS68188.1| Polynucleotide adenylyltransferase region [Xanthobacter autotrophicus Py2] Length = 406 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 137/417 (32%), Positives = 218/417 (52%), Gaps = 17/417 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +SIV ++ L+ +L+ LN +++ +VGGAVR++L+ L V D+DIATT +P+ V Sbjct: 3 LSIVGAPFWRTPGLMAVLAALNADGEEARVVGGAVRNTLLGLPVSDVDIATTAVPEVVAE 62 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K K +PT + +GT+ ++ F++TTLR D+ TDGR A V F R W D+ RRD Sbjct: 63 RARKAGLKPVPTGVEHGTVTVVADHHAFEVTTLREDMETDGRRAVVRFGRSWLHDAERRD 122 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYA G V+D VGGL+DL R I+FIGD RI EDYLRILR FRF A YG Sbjct: 123 FTLNALYATADGAVVDLVGGLSDLTARRIRFIGDPQARIREDYLRILRLFRFHAAYGAGP 182 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D D +AS++ + GL LS ER+ +E+ KLL A + M + G+ + + + ++ Sbjct: 183 VDKDAFIASVRRRAGLLTLSRERVRTEMLKLLVAPGAAATLAVMSDAGLVQPLIAGIADV 242 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +++ E+ ++ K D++ R L + D + L + S R +S Sbjct: 243 G--AFTRLAALERDWQAKPDAIRRLAALAVRVSDDAARLRDRLRLSNAEARRLAALSATV 300 Query: 301 CNFNQKTLSIPEIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + +P+ + + +LY + V A LA + + +V + W Sbjct: 301 SD-------LPDAQAVRAFLYRNGVDAALDLALLAAAHGRDGME------RVAAMAASWT 347 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P P D++ G+ PG+ +G L + WI + F + + LL + + +S Sbjct: 348 TPRLPFAAADLMALGLIPGRALGAALARAEARWIAADFPTDPDVVAGLLAEAVKASS 404 >gi|118591958|ref|ZP_01549353.1| poly(A) polymerase [Stappia aggregata IAM 12614] gi|118435601|gb|EAV42247.1| poly(A) polymerase [Stappia aggregata IAM 12614] Length = 414 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 135/409 (33%), Positives = 222/409 (54%), Gaps = 23/409 (5%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W + + + + + D++ +VGGAVR++L+ V D+DIATT P+ VM+ Sbjct: 11 QADWLKSPGIQAVFAAIEQDGDEARVVGGAVRNTLLGHPVPDVDIATTASPEMVMKRARA 70 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 K I T I +GTI ++ +++TTLR D+ T GR A+VVF R+W D+ RRDFT+N Sbjct: 71 AGLKPIGTGIDHGTITVVSSGYPYEVTTLREDVETFGRQARVVFGRNWTRDAERRDFTLN 130 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D+ G++ D +GGL+D NR ++FIGD RI EDYLRILRFFR +A YG ++D+D Sbjct: 131 ALYVDRHGRLHDPLGGLDDCLNRHVRFIGDPDTRIREDYLRILRFFRIYAAYGAGDMDAD 190 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A ++ + GL+ LS+ERI E+ +LL A A+ + + G++ EI+ Sbjct: 191 GLGACLRQRDGLRHLSAERIGHEMRRLLRAPLAATALKLLNDCGLW--------EIATGG 242 Query: 246 LSQVIE--AEQVFEWK----IDSLLRFIVLISW--QDKKSILSMAKKFSLPREIRYFLIS 297 L+++ + A + E D L +VL + +D + + + + R+ + Sbjct: 243 LARIEDYLALRSLEGSASEVTDPELGLVVLTGFVREDVERVCDRLRLSNAERDRMRTAWA 302 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMI-AKLKIFLALHYNNLTHQDT-CFILQVLSDI 355 C ++ +PE + + Y +G + I L + L D +L L ++ Sbjct: 303 AMRC--LRQADKLPEAEDMVYQFGRQGAIDGLLGRWAGLRAQGKDPGDAFAGLLDRLREV 360 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P FP+ G D++ G PG+ +G+ L + +W +S F L++++L Sbjct: 361 ---PVPQFPIKGADLIAAGHAPGRALGDSLKALEADWRDSGFSLTRDEL 406 >gi|27377580|ref|NP_769109.1| poly(A) polymerase [Bradyrhizobium japonicum USDA 110] gi|27350724|dbj|BAC47734.1| poly(A) polymerase [Bradyrhizobium japonicum USDA 110] Length = 418 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/406 (32%), Positives = 198/406 (48%), Gaps = 16/406 (3%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + W +L LL +++ +VGGAVR++L+ L DIDIATT P+ V+R Sbjct: 7 LADAPWLISGGTARVLQLLGADGEEARVVGGAVRNALLGLVPGDIDIATTARPEEVVRRA 66 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 K +PT I +GT+ ++ +++TTLR D T GR AKV F RDW D+ RRDFT Sbjct: 67 KAAGIKSVPTGIDHGTVTLVIDGHPYEVTTLREDTETFGRKAKVAFGRDWVKDAERRDFT 126 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +N L D G V D+VGG+ D R R ++FIGD RI EDYLRILRFFR A +G D Sbjct: 127 MNGLSVDATGVVYDHVGGIADARARRVRFIGDPDQRIAEDYLRILRFFRIHAAFGAGEPD 186 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 DG +A I+ + GL LS+ER+ E+ KLL A A++ M GG+ + + V Sbjct: 187 RDGYLACIRGRAGLASLSAERVRMEMLKLLVAGGASAAVLAMAEGGLLQALIGGVAYTGP 246 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 IE E + L + + +D K + A + L L S + + Sbjct: 247 LASMVAIERELGLPASVTRRLAALTVAVTEDAKRV---ATRLRLSNAEAKALDSMGHRWW 303 Query: 304 NQKTLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 T ++L Y G D+V++ + +H + ++ + Q W Sbjct: 304 RFATKDEANARRLLYRLGAERYHDRVLLGWARAAGDVHSSRW--RELAELPQ------RW 355 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P FPL D + G+ G +G++L + W+ + F L + L Sbjct: 356 TAPKFPLRAADFIARGMAEGPALGHVLTLAEDAWLAADFPLEEAAL 401 >gi|254420680|ref|ZP_05034404.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Brevundimonas sp. BAL3] gi|196186857|gb|EDX81833.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Brevundimonas sp. BAL3] Length = 401 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/418 (33%), Positives = 197/418 (47%), Gaps = 26/418 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILPDRV 59 VS+ W +++ L C VGG VR+SL+ V DIDIAT + P+ Sbjct: 3 VSMRGQPWLEAKATRAVMAALQAAGGPDCARFVGGCVRNSLLGQPVDDIDIATRLRPEET 62 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 M K +PT + +GT+ + +K ++ITTLR D+ TDGR A V FT DW D+ R Sbjct: 63 MTALQAAGLKAVPTGLEHGTVTGVSERKPYEITTLRRDVETDGRRAVVAFTEDWAEDAAR 122 Query: 120 RDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDF +NALYAD G V D GGL D I F+G+A RI EDYLRILRFFRF A YG Sbjct: 123 RDFRLNALYADAAGTVFDPTGGGLADAAKGRIVFVGEAETRIREDYLRILRFFRFQAWYG 182 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 D+ GL A K G+ LS+ER+ E+ KLL A++P + + M G+ ++ + Sbjct: 183 RGQPDATGLAACAALKAGMAQLSAERVSKELMKLLAARDPRSTVRAMAETGVLGQVLPEA 242 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 Q ++L E + D +LR L+ D+ +++ +A L R L + Sbjct: 243 QPLNL--------FEAMCGLTGDPVLRLSALLP-ADEGAVVRIAGSLRLSNGTRDRLAAA 293 Query: 299 FNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 T ++ E + Y G +L L+ L+ Sbjct: 294 VAEGPVVATDMTEAEARAAIYRLGRDAFEDRL-------TRAEAAGGDGGALRRLA--AG 344 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH-LLRKLIAS 414 W P P+ G D+ + G+ PG + G +L + WI F D H LR +AS Sbjct: 345 WTPPKMPVGGRDLARLGLKPGPETGRVLKAFEAGWIADDF---PSDGHEGRLRAAMAS 399 >gi|307295583|ref|ZP_07575419.1| Polynucleotide adenylyltransferase region [Sphingobium chlorophenolicum L-1] gi|306878622|gb|EFN09842.1| Polynucleotide adenylyltransferase region [Sphingobium chlorophenolicum L-1] Length = 402 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 131/398 (32%), Positives = 192/398 (48%), Gaps = 19/398 (4%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ W H L +L L + VGGAVRD L+ L V D+DIAT P VM Sbjct: 1 MTSLPDADWRHRPGLDALLKALGAEQGLVRFVGGAVRDGLLGLPVNDLDIATVTEPQGVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GTI + +ITTLR D+ TDGR A + +T DW+ D+ RR Sbjct: 61 DRLKAAGIKAVPTGIDHGTITAVIHGWPVEITTLRRDVSTDGRRATIAYTDDWREDAARR 120 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYAD +V D+ GG+ DL ++FIGDA RI ED+LRILR+FRF A +G Sbjct: 121 DFTINALYADPITHEVTDFFGGVADLNAHRVRFIGDADARIAEDHLRILRYFRFLARFGH 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D A A L LS ERI E+ KLL PL ++ M GGI + + ++ Sbjct: 181 DEPDPQAYAACRAAANSLMALSRERIADELLKLLALPRPLASLRLMVEGGILRPVIPEID 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 L +LS +I+ E + ++ R L+ D ++ + + L + R +++ Sbjct: 241 GNGLARLSTLIDREAASNTALSAVRRLSALLP-PDPRTADQVGARLKLSNKARKRMMTAL 299 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + Q + L + G + I ++ I D L ++ + W Sbjct: 300 EGSGTQA-----PPRTLAFRIGVEGAIDRILI------------DPSAPLDGVAMLTDWT 342 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 P P++G ++ G+ PG V L ++ W+ F Sbjct: 343 PPRLPISGGALIARGLQPGPDVARALAQVQEIWVAEGF 380 >gi|146339019|ref|YP_001204067.1| putative poly(A) polymerase [Bradyrhizobium sp. ORS278] gi|146191825|emb|CAL75830.1| putative poly(A) polymerase [Bradyrhizobium sp. ORS278] Length = 417 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 131/411 (31%), Positives = 202/411 (49%), Gaps = 26/411 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 ++ W +L+LLN +++ +VGGAVR++L+ +++ DIDIATT LP V+R Sbjct: 6 VLSAPWLSSGPAARVLALLNCDGEEARVVGGAVRNALLGVAIGDIDIATTALPPEVIRRA 65 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 K +PT I +GTI ++ F++TTLR D T GR AKV F RDW D+ RRDFT Sbjct: 66 KAASIKSVPTGIDHGTITLVLDGHPFEVTTLREDTETFGRKAKVAFGRDWVGDAHRRDFT 125 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 INAL G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR + +G D Sbjct: 126 INALSVGADGVVHDHVGGLADIEARRVRFIGDPSQRIAEDYLRILRFFRIHSAFGHGEPD 185 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +G +A I + GL LS+ER+ E+ KLL + + A+ M +GG+ I V + Sbjct: 186 REGYLACIAGRGGLATLSAERVRMEMLKLLVTEGAVGAVTAMADGGLLTSILGGVAYVG- 244 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 + +I+ E+ S +R + ++ + + + L L + + Sbjct: 245 -PFAAMIDIERELSLP-PSPVRRLAALAVAVTEDARRLGARLKLSNAETKALDGMGHRWW 302 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK--- 360 + ++L Y G+ V +L + A + C D HW++ Sbjct: 303 RFASADEARGRRLLYRLGETVYRDRLMLGWA--------RSGC-----RRDAQHWRELAL 349 Query: 361 -------PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P PL D + G+ G +G++L + W+ + F L + L Sbjct: 350 LPQRFTPPKLPLKAADFIARGVAEGPLLGHVLTLAEDAWLAADFPLDEASL 400 >gi|328542784|ref|YP_004302893.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [polymorphum gilvum SL003B-26A1] gi|326412530|gb|ADZ69593.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Polymorphum gilvum SL003B-26A1] Length = 410 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 134/411 (32%), Positives = 210/411 (51%), Gaps = 13/411 (3%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ W + + L + D++ VGGAVR++L+ + V D+DIATT P VM Sbjct: 1 MRSLSDAPWLTAQSIQQVFEALEQDGDEARAVGGAVRNTLLGVPVADVDIATTAEPATVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT I +GT+ ++ +++TTLR D+ T GR+A V F RDW D+ RR Sbjct: 61 KRALAHGLKPVPTGIDHGTVTVVSSGIAYEVTTLREDVETFGRHAVVRFGRDWSHDARRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFT+NALY D+ G++ D +GG D R ++FIGDA RI EDYLRILRFFR A YG Sbjct: 121 DFTMNALYVDRHGRIDDPIGGYEDCLARRVRFIGDAAERIREDYLRILRFFRIHAAYGVG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D DGL A+I+A+ GL+ LS+ER+ E+ +L+ I M + GI + + V Sbjct: 181 QPDPDGLHAAIRARDGLRRLSAERVGMEVKRLVTTAGAPGVIRLMESCGILEIVTGGVGR 240 Query: 241 I----SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + +L +L +V Q + +L F+ ++ + + +F L R ++ Sbjct: 241 LVDFEALRRLDRVAPEAQEAPVCLVALSGFV-------EEDLDRLVSRFRLSNAERERMM 293 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 Q E L+ D A LA + D + +L Sbjct: 294 RAHRAA-AQLAHGADERGIRGVLFTDGRQPAIDGALLAWARSGGEAYDETW-KSLLGLAR 351 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +W P+FP+ G D++K G+ G +G +L + +++S + +++EDL L Sbjct: 352 NWPIPMFPVGGRDLLKQGVAAGPALGAVLARLRAAFMDSDYTMTREDLLRL 402 >gi|42520318|ref|NP_966233.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410056|gb|AAS14167.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 391 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 205/377 (54%), Gaps = 19/377 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++ V DID+AT +LP++ ++ K IPT + +GTI + ++ F+ Sbjct: 23 LVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLKHGTITAVLNQRSFE 82 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + DY GG+ DL+ R + Sbjct: 83 ITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKARRL 142 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 FIG+A RI EDYLRILR FRF A ++ + L K ++ LS ERI EI Sbjct: 143 NFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILSVCKKHSHMIQNLSGERIRDEIL 202 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 KLLE +P + M + ++I +E+ + LS + D+L++ +L+ Sbjct: 203 KLLECNDPFPTLKSMQESDVLQKII--PKEVKCEILSSPL------LLGTDALVKLALLL 254 Query: 271 SWQDKKSILSMAK---KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 K LS+ + KF + + F N + LS E KK L+G ++ Sbjct: 255 RATKKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGRELYCD 314 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 +KI N+ + +S + P FPL+GDD++ G PGK +G L Sbjct: 315 LVKICGVESGENVD--------EYISFANTFNIPKFPLSGDDLISIGHQPGKSLGRNLEL 366 Query: 388 CKQEWINSSFQLSQEDL 404 KQ W +SS+ L++E+L Sbjct: 367 LKQHWEDSSYTLTKEEL 383 >gi|225677338|ref|ZP_03788313.1| poly A polymerase family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590624|gb|EEH11876.1| poly A polymerase family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 390 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 138/376 (36%), Positives = 205/376 (54%), Gaps = 18/376 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++ V DID+AT +LP++ ++ K IPT + +GTI + ++ F+ Sbjct: 23 LVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLKHGTITAVLNQRSFE 82 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + DY GG+ DL+ R + Sbjct: 83 ITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKARRL 142 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 FIG+A RI EDYLRILR FRF A ++ + L K ++ LS ERI EI Sbjct: 143 NFIGNAEDRIKEDYLRILRAFRFHAKICAGDLSDEILSVCKKHSHMIQNLSGERIRDEIL 202 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 KLLE +P + M + ++I +E+ + LS + D+L++ +L+ Sbjct: 203 KLLECNDPFPTLKSMQESDVLQKII--PKEVKCEILSSSL------LLGTDALVKLALLL 254 Query: 271 --SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 + D+ S+ KF + + F N + LS E KK L+G ++ Sbjct: 255 RTTKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGRELYCDL 314 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 +KI N I + +S + P FPL+GDD++ G PGK +G L Sbjct: 315 IKICGVESGEN--------IDKYISFANTFNIPKFPLSGDDLISIGHQPGKSLGKNLELL 366 Query: 389 KQEWINSSFQLSQEDL 404 KQ W +SS+ L++E+L Sbjct: 367 KQHWEDSSYTLTKEEL 382 >gi|91975779|ref|YP_568438.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisB5] gi|91682235|gb|ABE38537.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisB5] Length = 417 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/404 (32%), Positives = 203/404 (50%), Gaps = 20/404 (4%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W H +L+LL+ +++ +VGGAVR++L+ L + D+DIATT LP+ V+R Sbjct: 11 WLHVGPAAQVLALLDGHGEEARVVGGAVRNALLKLPIGDVDIATTALPEEVVRRARAAGI 70 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+ RRDFTIN L Sbjct: 71 KAVPTGIEHGTVTLVLDGHGFEITTLREDVETFGRKAKVAFGRDWVRDAQRRDFTINGLS 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR A YG + DG + Sbjct: 131 VSADGVVHDHVGGLADIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGVGAPERDGYL 190 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A I+ + GL LS+ER+ E+ KL+ A ++V M + + + I + Sbjct: 191 ACIRGRGGLSTLSAERMRMEMLKLMVAGGAAESVVAMAD--GGLLLGVLGGVIYPGAFAA 248 Query: 249 VIEAEQVFEWKIDSLLRF--IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 ++EAE+ D + R + + +D K + ++ L L S + + Sbjct: 249 MVEAERALGLDADPVRRLGALAVAVTEDAK---RLTQRLRLSNAESKRLDSMGHRWWRLA 305 Query: 307 TLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + ++ Y G D++M+A + + +D + Q W+ P Sbjct: 306 RMDEATARRRLYRLGEPRFHDRMMLAWARA--GREADPAPWRDLIALPQ------RWRAP 357 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FPL D + G G +G++L + W+ + F + + L Sbjct: 358 AFPLKAADFIARGFAEGPALGHVLTLAEDAWLAADFPVDDQRLQ 401 >gi|103487591|ref|YP_617152.1| polynucleotide adenylyltransferase region [Sphingopyxis alaskensis RB2256] gi|98977668|gb|ABF53819.1| Polynucleotide adenylyltransferase region [Sphingopyxis alaskensis RB2256] Length = 398 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/401 (34%), Positives = 202/401 (50%), Gaps = 26/401 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + W L I++ L +VGGAVRD+L+ L V D+D+AT ++P V Sbjct: 1 MTRLPDAAWRDRPGLRRIVAALADDGGAVKVVGGAVRDTLLGLDVTDVDLATPLVPGEVT 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R KVIPT I++GT+ I + +ITTLR D+ TDGR A V F DW+ D+ RR Sbjct: 61 RRLEAAGIKVIPTGIAHGTVTAIASGDHHEITTLRRDVATDGRRATVAFADDWREDAARR 120 Query: 121 DFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYAD + G + D+ GGL DL + FIGDA RI ED+LRILRF+RF A +G Sbjct: 121 DFTINALYADPRTGAIDDWFGGLADLDRGRVAFIGDAASRIAEDHLRILRFYRFAARFGR 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++D A + A++ LK LS ERI E+ K+L +P + M+ GI + ++ Sbjct: 181 GDLDPASHAAVVAARQSLKSLSRERIADELAKILALPDPRAIVAQMHADGILAVLLPELD 240 Query: 240 ---EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 +LD+L A + + + LR + + D +A + L R L Sbjct: 241 AGFAAALDRLF----ANEAVAGAVPAALRRLAALLPADVAIAEQVASRLRLSTRQRKHLA 296 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + ++ ++ P +++L Y G A +L D L+ LSD Sbjct: 297 AL---GGHRHDVARP-VRQLAYAIG----------IEAARDVHLLAGDPA-ALRTLSD-- 339 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 W+ P+ P+ G D+V GI G +V IL + W+ F Sbjct: 340 -WQVPMLPVKGGDIVARGIAAGPEVARILKAVEAAWVAEDF 379 >gi|225630119|ref|YP_002726910.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia sp. wRi] gi|225592100|gb|ACN95119.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia sp. wRi] Length = 390 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/376 (36%), Positives = 207/376 (55%), Gaps = 18/376 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++ V DID+AT +LP++ ++ K IPT +++GTI I ++ F+ Sbjct: 23 LVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLNHGTITAILNQRSFE 82 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + DY GG+ DL+ R + Sbjct: 83 ITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKVRRL 142 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 FIG+A RI EDYLRILR FRF A ++ + L K ++ LS ERI EI Sbjct: 143 NFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCKKHSHMIQNLSGERIRDEIL 202 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 KLLE +P + M + ++I +E+ + LS + + D+L++ +L+ Sbjct: 203 KLLECNDPFPTLKSMQESDVLQKII--PKEVKCEILSSSL------LFGTDALVKLALLL 254 Query: 271 --SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 + D+ S+ KF + + F N + LS E KK L+G ++ Sbjct: 255 RTTKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGRELYCDL 314 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 +KI N+ + +S + P FPL+GDD++ G PGK +G L Sbjct: 315 VKICGVESGENVD--------EYISFANTFNIPKFPLSGDDLISIGHQPGKSLGRNLELL 366 Query: 389 KQEWINSSFQLSQEDL 404 KQ W +SS+ L++E+L Sbjct: 367 KQHWEDSSYTLTKEEL 382 >gi|87199043|ref|YP_496300.1| polynucleotide adenylyltransferase region [Novosphingobium aromaticivorans DSM 12444] gi|87134724|gb|ABD25466.1| Polynucleotide adenylyltransferase region [Novosphingobium aromaticivorans DSM 12444] Length = 400 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/401 (32%), Positives = 197/401 (49%), Gaps = 34/401 (8%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCI-VGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 + + W DL +++ L+ +C VGG VRD+++ L +DID+ATT+ PD Sbjct: 5 LPKADWTARDDLAALVAALDPDSQGNCRWVGGVVRDTILGLPAKDIDMATTLPPDETAAR 64 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 S K +PT I++GT+ + +ITTLR D+ TDGR+A V F+ DW+ D+ RRDF Sbjct: 65 LSTAGIKSVPTGIAHGTVTAVLPGGPVEITTLRRDVSTDGRHATVSFSTDWRDDAARRDF 124 Query: 123 TINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINALYAD + +V DY GGL DL R ++FIGDA RI EDYLRILR+FRF A +G Sbjct: 125 TINALYADPRTLEVFDYHGGLADLAARRVRFIGDARQRIREDYLRILRYFRFQARFGSIP 184 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D++ A + GLK LS ER+ E+ LL +P + M G+ ++ + Sbjct: 185 ADTEAESAVSELAAGLKGLSRERVGWELMNLLGLPDPAPTMRRMAELGVLAQVLPETAAD 244 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 LD L +I EQ ++ R L+ D+ +A + L R L + Sbjct: 245 GLDALEALIGNEQSARADAVAIRRLAALLP-ADRHLAELVAARLRLSAAQRKRLATVAAP 303 Query: 302 NFNQKTLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + + + L Y G D+++IA + + + Sbjct: 304 SGADG-----DARALAYRIGIEEARDRLLIAGRPV---------------------AALD 337 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 W+ P PL G ++V G+ G +V L + +WI+ F Sbjct: 338 GWQAPALPLKGGEIVARGVTAGPEVARTLRAVEDQWISEGF 378 >gi|86748321|ref|YP_484817.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris HaA2] gi|86571349|gb|ABD05906.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris HaA2] Length = 418 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 132/406 (32%), Positives = 200/406 (49%), Gaps = 18/406 (4%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 W H +L+LLN +++ +VGGAVR++L+ L + D+DIATT LPD V+R Sbjct: 11 PWLHAGPAAQVLALLNHDGEEARVVGGAVRNALLKLPIGDVDIATTALPDEVVRRARAAG 70 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K +PT + +GT+ ++ F++TTLR D+ T GR AKV F RDW D+ RRDFTIN L Sbjct: 71 IKAVPTGVEHGTVTLVLDGHGFEVTTLREDVETFGRKAKVAFGRDWLRDAQRRDFTINGL 130 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 G V DYVGGL+D+ R ++FIGD RI EDYLRILRFFR A YG G Sbjct: 131 SVSPDGVVHDYVGGLDDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGVGPPQRAGT 190 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 +A I+ + GL LS+ER+ E+ KL+ A L ++ M + + + + Sbjct: 191 LACIRGRAGLATLSAERMRMEMLKLMVADGALASVEAMAD--GGLLLAVLGGVTYPGPFA 248 Query: 248 QVIEAEQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 +I AEQ D + R L ++ + LS + S R L S + + Sbjct: 249 AMIGAEQALGLDPDPVRRLGALAVAVTEDAKRLSQRLRLSNAEAKR--LDSMGHRWWRLA 306 Query: 307 TLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + ++ Y G D++M+A + D +++ W+ P Sbjct: 307 GMDEATARRRLYRLGEPRFHDRMMLAWARAG--------RQADPAPWRNLVALPQRWRPP 358 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 FPL D + G G +G++L + W+ + F + + L + Sbjct: 359 GFPLKAADFIARGFAAGPALGHVLTLAEDAWLAADFPVEEGRLQAI 404 >gi|326388402|ref|ZP_08209998.1| polynucleotide adenylyltransferase region [Novosphingobium nitrogenifigens DSM 19370] gi|326207134|gb|EGD57955.1| polynucleotide adenylyltransferase region [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 141/413 (34%), Positives = 205/413 (49%), Gaps = 28/413 (6%) Query: 3 SIVQHKWFHDSDLINI-LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 S+ W DL + L+L GE VGGAVRD+L+ ++V+DID+AT +LP+ + Sbjct: 4 SLPAAPWTRREDLAEVVLALDPDGEGLCRWVGGAVRDTLVGIAVKDIDMATRLLPEETLA 63 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K IPT +++GT+ + +ITTLR D+ TDGR+A V F+ DW+ D+ RRD Sbjct: 64 RLKAAGIKAIPTGLAHGTVTALTAGGPVEITTLRRDVETDGRHATVAFSTDWREDAARRD 123 Query: 122 FTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINALYAD + ++ DY GG DL ++FIGDA RI EDYLRILR+FRF A +G Sbjct: 124 FTINALYADPRTLEISDYFGGQADLAAHRVRFIGDAETRIREDYLRILRYFRFHARFGSL 183 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++ A + GLK LS ER+ E+ +LL +P + M G+ +I E Sbjct: 184 PADAEAEEACARLAPGLKGLSRERVGWELLRLLGHPDPAPTLRRMAELGVLAQIL---PE 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 + L ++ AE DSL R ++ D +A + L + L Sbjct: 241 ADPEALPPLVAAEACENVAPDSLRRLAAILP-PDPPLAEQVAARLRLSTAQKKRL----- 294 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 +T E + L Y G + A ++ LA Q L+ + W Sbjct: 295 ATAAARTSETGEPRALAYRLG--MTEASDRLLLA--------------GQSLAPLAGWSP 338 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P FPL G +V GI G V +L + WI+ F +E + +L++ IA Sbjct: 339 PTFPLKGGAIVARGIGAGPMVARLLRTVENRWIDEGFP-DEERIEAMLQEEIA 390 >gi|220925023|ref|YP_002500325.1| polynucleotide adenylyltransferase region [Methylobacterium nodulans ORS 2060] gi|219949630|gb|ACL60022.1| Polynucleotide adenylyltransferase region [Methylobacterium nodulans ORS 2060] Length = 417 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 201/372 (54%), Gaps = 13/372 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L +L+ L +++ +VGGAVRD+L+ V D+D+ATT+LP+ V+R+ +K K +PT Sbjct: 19 LRRVLAALEAPGEETRLVGGAVRDALLGRRVADVDLATTLLPEEVVRLAAKAGLKPVPTG 78 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 I +GT+ ++ + F++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL AD G+ Sbjct: 79 IDHGTVTVVAEGEPFEVTTLREDIETDGRHAVVRFGRDFARDAERRDFTINALSADPAGR 138 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D VGG DL + ++FIG A RI EDYLR+LRFFRF A YG +D +GL ASI A+ Sbjct: 139 LHDTVGGAADLASGRVRFIGAAAQRIREDYLRVLRFFRFHARYGRGALDPEGLAASIAAR 198 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 +GL LS ER+ E+ KLL A A + G+ + + + + L +L+++ +E Sbjct: 199 EGLATLSRERVRVELLKLLAAPGAAQATAILSGTGLLQRLIGGIGD--LGRLARLAASEA 256 Query: 255 VFEWKIDSLLRFIVL--ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN--QKTLSI 310 V D L R L +S D L A + S R + + + Q + + Sbjct: 257 V----PDPLRRLAALAVLSGPDADR-LRDALRLSKAEHARLAAYAEASAALHGAQAPVDV 311 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 EI++ L G + + + + LT + + S P P++G + Sbjct: 312 AEIRRRVALSGVQAVSDAILVLTGEPTPVLTEEAARALAAFASGA--EPVPALPISGALL 369 Query: 371 VKYGIPPGKKVG 382 V G PG +G Sbjct: 370 VSRGAKPGPSLG 381 >gi|298292458|ref|YP_003694397.1| polynucleotide adenylyltransferase region [Starkeya novella DSM 506] gi|296928969|gb|ADH89778.1| Polynucleotide adenylyltransferase region [Starkeya novella DSM 506] Length = 408 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 135/401 (33%), Positives = 207/401 (51%), Gaps = 22/401 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKVIPT 73 L +L+ L+ +++ IVGGAVRD L+ V+ DIDIATT P+ V R K +PT Sbjct: 16 LARVLAALDGEGEEARIVGGAVRDWLIGRGVRFDIDIATTATPEEVTRRALAAGLKAVPT 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 + +GT+ +I + +++TTLR D+ TDGR A+VVF R+W D+ RRDFT+NALY + G Sbjct: 76 GVEHGTVTVIAEGEPYEVTTLREDVETDGRRARVVFGRNWAHDAQRRDFTMNALYLTRAG 135 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID VGG D R ++FIGDA RI EDYLRILR FRF A YG+ +D D L A+++ Sbjct: 136 ELIDLVGGEADARAGRVRFIGDADVRIREDYLRILRLFRFHAAYGKGALDEDALAAAVRN 195 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEA 252 ++GL LS ER+ +E+ KLL A + M G+ + + + + +LS+V Sbjct: 196 REGLDRLSRERVRAEMMKLLVAPRAAETLAQMEAAGLLEPVLGRAGDARTFVRLSEV--- 252 Query: 253 EQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFN-----CNFNQK 306 E D++ R L + ++ L + S R ++ C QK Sbjct: 253 EASLAMVPDAVRRLGALAVRSEEDAEALREGLRLSNAEATRLAALAGPAPTPGMCEKGQK 312 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 Y G + + + +A ++ + +D + + S W P+FPL Sbjct: 313 A--------FLYRMGREAF--QDRALIAFAHSGASLEDEGW-RALASLAAGWPIPVFPLK 361 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 D + GI PG +G L ++ WI + F + DL + Sbjct: 362 AADFIARGIQPGPALGAALKRAEEAWIEAGFPMGAGDLERI 402 >gi|115522969|ref|YP_779880.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisA53] gi|115516916|gb|ABJ04900.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisA53] Length = 418 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 136/406 (33%), Positives = 207/406 (50%), Gaps = 8/406 (1%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W L+LLN +++ ++GGAVR++L+ ++ D+DIATT PD V R R Sbjct: 12 WLRAGPAARALALLNGDGEEARVIGGAVRNALLGIATGDVDIATTARPDEVTRRAQVARI 71 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+ RRDFTIN L Sbjct: 72 KCVPTGIEHGTVTLVIEGTPFEITTLREDVETFGRKAKVEFGRDWVRDAQRRDFTINGLS 131 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR A YG+ +D + + Sbjct: 132 VSADGTVHDHVGGLEDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAYGQGAVDREAYL 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A I+ + GL LS+ERI E+ KL+ + L A + M + G+ + V L+ Sbjct: 192 ACIRGRDGLATLSAERIRMEMLKLMVTREALGAAMAMADAGLLLRVLGGVSYHG--PLAA 249 Query: 249 VIEAEQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 +I AE+ + D++ R L ++ + LS + S R L S + + Sbjct: 250 MIAAERALGLEPDAVRRLGALGVAVTEDARRLSQRLRLSNAETKR--LDSMGHRWWRLPG 307 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 + K+ Y G ++ + +A + T Q+++ W+ P FPL Sbjct: 308 MDEATAKRRLYRLGAPRYHDRMMLAIARAGGDAT---AVPWRQLIALPQRWQAPAFPLKA 364 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 D + G+ G +G+I+ + W+ S F L L + + +A Sbjct: 365 ADFIARGVAQGPALGHIIALAEDAWLASDFALDPPTLSAIADQTVA 410 >gi|323136281|ref|ZP_08071363.1| Polynucleotide adenylyltransferase region [Methylocystis sp. ATCC 49242] gi|322398355|gb|EFY00875.1| Polynucleotide adenylyltransferase region [Methylocystis sp. ATCC 49242] Length = 411 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 133/419 (31%), Positives = 213/419 (50%), Gaps = 23/419 (5%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D L + + L K ++ +VGGAVRD+L L +ID+ATT LP+ V+ Sbjct: 3 LAQRLLDDPRLATLFAALAKTGGETRVVGGAVRDALFGLPPHEIDLATTALPEDVLAAAR 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GT+ I+ F++TTLR D+ TDGR+AKV F D+ D+ RRDFT+ Sbjct: 63 DAGLKGVPTGIEHGTVTIVVAGTPFEVTTLREDVETDGRFAKVRFGGDFDQDARRRDFTV 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NAL G++ D GG+ DL R I+FIGDA RI EDYLR+LRFFRF A +GE D Sbjct: 123 NALSLTPDGELHDPTGGIADLEARRIRFIGDAATRIREDYLRVLRFFRFNASHGEGAFDR 182 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +GL SI A++ L LS ER+ +E+ KLL A+ + M G+ + I L+ Sbjct: 183 EGLHESIIARENLARLSRERVRAELVKLLPARRAPEVVRAMSQAGVIEVILGMGYPARLE 242 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 +L+ EA Q K D++LR ++L++ L +R + + Sbjct: 243 RLA-AFEAAQ--GKKPDAVLRLAAF-------AVLTVEDAERLRDRLRLSNDEWSRLSAA 292 Query: 305 QKTLS----------IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 +TL+ + ++++ ++ G + L + + D L+ Sbjct: 293 ARTLAALHGIERPPPVSHLREMLFICGARAAADALAL---AFAESAAAPDDPQWLEAAKY 349 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + P FP+ G D++ G+ PG+++G +L + +WI + F + + LL + + Sbjct: 350 LDENPAPAFPIRGADLIARGVAPGRELGAVLKSLQAQWIRAGFPRDPQAVMQLLEEAVG 408 >gi|148553037|ref|YP_001260619.1| polynucleotide adenylyltransferase region [Sphingomonas wittichii RW1] gi|148498227|gb|ABQ66481.1| Polynucleotide adenylyltransferase region [Sphingomonas wittichii RW1] Length = 401 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 134/399 (33%), Positives = 194/399 (48%), Gaps = 22/399 (5%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + W H L +L L E VGGAVRD+L+ L V+DID AT +LP+ Sbjct: 1 MTLLPDAAWRHLPGLDRLLDALGAAEGDVRFVGGAVRDTLLGLPVKDIDCATRLLPEESS 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R + +K IPT I++GT+ + ++TTLR D+ TDGR A V FT +W+ D+ RR Sbjct: 61 RRIAAAGFKAIPTGIAHGTVTALLPSGPVEVTTLRRDVATDGRRAVVAFTDEWREDAARR 120 Query: 121 DFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINAL AD G V DY GG DL ++FIGD RI ED+LRILR FRF A +G Sbjct: 121 DFTINALSADPSTGAVHDYFGGRADLDAGLVRFIGDPLRRIAEDHLRILRLFRFHARFGR 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D+ L A I L LS ER+ E+ KLL +P + M++ GIF+ I ++ Sbjct: 181 GTPDAAALDACIARANDLMALSRERVADELLKLLGVADPAPTVRLMHDSGIFRPIIPEID 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + +L ++I E + D+L R L+ D ++A++ L + Sbjct: 241 GDGVARLDRLIAREAIAGTAADALRRLGALLP-PDPVIAAAIAQRLKLSKAA-------- 291 Query: 300 NCNFNQKTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Q I + + L Y +G +V L L + L L + W Sbjct: 292 TRRLEQAASGIDDAPRALAYRFGAEVAADLL----------LRGERPAEALG-LDTLDGW 340 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 ++P P+ G +++ G+ G V L ++ WI F Sbjct: 341 ERPRLPIGGGELIAMGLKAGPVVAATLQAIERRWIAEGF 379 >gi|190570623|ref|YP_001974981.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019125|ref|ZP_03334932.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356895|emb|CAQ54272.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995234|gb|EEB55875.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 408 Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 143/401 (35%), Positives = 214/401 (53%), Gaps = 24/401 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ + K ++ +VGG VRDS++ + DID+AT +LP++ ++ K IPT + + Sbjct: 10 IIEAIEKFGGEARLVGGCVRDSILQRDIHDIDLATNLLPNQAVKALKLRNIKTIPTGLKH 69 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GTI I K+ F+ITTLR D+ DGR+AKV FT DW+AD+ RRDFT NALYAD+ G + D Sbjct: 70 GTITAILNKRSFEITTLRHDVKCDGRHAKVEFTNDWQADASRRDFTFNALYADKYGHIYD 129 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 Y GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L K + Sbjct: 130 YFGGIQDLKARKLNFIGNAEDRIKEDYLRILRAFRFHAKICIGDLSDEILDVCKKHSHMI 189 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI------- 250 + LS ERI EI KLLE +P + M + ++I +E+ + LS + Sbjct: 190 QNLSGERIREEIFKLLECNDPAPTLKSMQKSDVLQKII--PKEVKCEILSSPLLINTKPP 247 Query: 251 ------EAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 + ID+L + +LI + +D+ S+ KF + + F N Sbjct: 248 TKPSAYGHTPFLDPTIDALTKLALLIRTAEDRVSLGEEVSKFLRLSNKQKKKLLFLLSND 307 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 + LS E KK L+G ++ +KI + T+ D + +I P F Sbjct: 308 IKTELSEKEQKKYISLFGKELYCDLMKI---CGIESGTNVDEYISFAHIFNI-----PKF 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 PL+GDD++ G PGK +G L +Q W +SS+ L++E+L Sbjct: 360 PLSGDDLIIIGHQPGKNLGRNLELLRQHWEDSSYTLTKEEL 400 >gi|182679758|ref|YP_001833904.1| polynucleotide adenylyltransferase region [Beijerinckia indica subsp. indica ATCC 9039] gi|182635641|gb|ACB96415.1| Polynucleotide adenylyltransferase region [Beijerinckia indica subsp. indica ATCC 9039] Length = 417 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/432 (32%), Positives = 210/432 (48%), Gaps = 44/432 (10%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +++ HK I ++ N +++ IVGG+VR++L V + D ATT LP+ + Sbjct: 12 TALLAHKGVE-----RIFAIFNGAGEETRIVGGSVRNALAGQHVHEFDFATTALPEIIQA 66 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K IPT I +GTI I+ + F+ITTLR D+ TDGR A V F RD++ D+ RRD Sbjct: 67 RAEAAGLKYIPTGIEHGTITILAGGESFEITTLRKDVETDGRRAIVRFGRDFEEDAHRRD 126 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTINAL DQ G + DY GGL DL ++FIG A RI EDYLRILR FRF A + Sbjct: 127 FTINALSMDQHGTLYDYTGGLADLAAGRVRFIGAARQRIREDYLRILRLFRFSADFAGGR 186 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D++GL A+I+ ++GL+ LS+ERI +E+ KL+ K + G+F + V + Sbjct: 187 LDAEGLDAAIREREGLRRLSTERIRAELLKLMGGKRVAEVAYEIAEAGLFTPLLPLVPQP 246 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE----IRYFLIS 297 S L RFI + + + +L +A F++ RE +R L S Sbjct: 247 S-------------------RLNRFITIETEATQDPLLRLAALFTMVRENVTALRVHL-S 286 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL----- 352 N + ++ L L A + LH ++ T D + Q Sbjct: 287 LSNAETTRLDHAVTLASSLHALAEPPSEPAMRALL--LHRSHQTLDDAFVLTQAGAPAAL 344 Query: 353 --------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + + KP P +G D++ GI PG +G L ++ WI + F E L Sbjct: 345 GAAWASARARLRTLPKPKLPFSGADLIARGISPGPGMGEALQRLEKAWIAAGFPEDSESL 404 Query: 405 HHLLRKLIASSQ 416 LL ++ + + Sbjct: 405 AALLDRIAPARR 416 >gi|260576142|ref|ZP_05844135.1| Polynucleotide adenylyltransferase region [Rhodobacter sp. SW2] gi|259021622|gb|EEW24925.1| Polynucleotide adenylyltransferase region [Rhodobacter sp. SW2] Length = 380 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/408 (34%), Positives = 202/408 (49%), Gaps = 40/408 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + + + L ++ VGG VR++L+ L+V DIDIAT +P+ V + Sbjct: 3 ISGPWMQAAPTQAVCAALTGAGFRALFVGGCVRNALLGLAVADIDIATDAVPETVTNLAE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I +ITT R D+ T GR+A V F+ D D+ RRD T+ Sbjct: 63 NAGFKVVPTGIDHGTVTVIAAGIAHEITTFRRDIETHGRHATVAFSTDIADDATRRDLTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 NALYA G+V+D +GGL DL R ++F+GDA+ RI EDYLRILRFFRF A YG+ N I Sbjct: 123 NALYATPDGEVVDPMGGLADLMARQVRFVGDANARITEDYLRILRFFRFHAIYGDPNGGI 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A G++ LS ERI +E+ KLL A NP A+ M G+ + + + Sbjct: 183 DAEGLAACAANSAGIETLSCERITAEMRKLLSADNPGPAVAAMARSGVLNAVLPGADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L +E + W L R VL + +FS R +F + Sbjct: 243 LAPLVH-LEGDTPPHW----LRRLAVLGGLAQTAHL-----RFS-----RAETTTFGHIR 287 Query: 303 FNQKTLSIPEIKKLFYLYG----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 TL +L Y G V++A+ +F N QD D I Sbjct: 288 DEIATLK--PASELGYRLGVALAKDVILARAALFETPPPN--AWQD---------DAIRG 334 Query: 359 KKPLFPLTGDDVVKYGIPP--GKKVGNILVHCKQEWINSSFQLSQEDL 404 FPL D+ +P G +G+ L +Q WI+S F L++ L Sbjct: 335 AAAKFPLRAADL----MPALHGPALGDRLRVLEQAWIDSGFSLTRAQL 378 >gi|326404402|ref|YP_004284484.1| CCA-adding enzyme [Acidiphilium multivorum AIU301] gi|325051264|dbj|BAJ81602.1| CCA-adding enzyme [Acidiphilium multivorum AIU301] Length = 403 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/390 (33%), Positives = 196/390 (50%), Gaps = 26/390 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L + DID+A+ + P+ V +K + +PT + +GTI + + Sbjct: 31 EARVVGGAVRDRLAGRPISDIDLASPLPPEAVATRLAKAGIRAVPTGLDHGTITAVLDGR 90 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 +F+ITTLR DL TDGR+A V FT DW+ D+ RRDFTINA+ + G + DY GG +DL Sbjct: 91 HFEITTLRRDLETDGRHAVVAFTDDWREDAARRDFTINAMSMARDGTIHDYFGGRDDLAA 150 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIW 206 ++F+GD RI ED+LRILRFFRF A Y E VA+I+A K GL LS+ER+W Sbjct: 151 GIVRFVGDPTTRIQEDFLRILRFFRFHARY-EAGPPDQAAVAAIRALKGGLARLSAERVW 209 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 EI ++L A +PL A+ M G+ + + + I Q Q A D LLR Sbjct: 210 QEIKRILAAPDPLAALNLMAETGVLQVVLPEAAGIMALQRLQTRGA------PADPLLRV 263 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 LI ++ +A++ L R L + L G+ V+ Sbjct: 264 AALIG----GAVRPLARRLRLAEAERARLEAIGTA------------PDLAADAGEAVLR 307 Query: 327 AKLKIFLA--LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 L + A L + D + + + ++P+FPL G D V G+ PG +G Sbjct: 308 HALADWPAETLIDRSWLAADDADRSALRARLATMERPVFPLKGRDAVAIGVAPGPAIGAA 367 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 L ++ W+ + LR+ +AS Sbjct: 368 LAAVRRWWMAHDCLPDGDACRAELRRHLAS 397 >gi|148261002|ref|YP_001235129.1| polynucleotide adenylyltransferase region [Acidiphilium cryptum JF-5] gi|146402683|gb|ABQ31210.1| Polynucleotide adenylyltransferase region [Acidiphilium cryptum JF-5] Length = 389 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/390 (33%), Positives = 196/390 (50%), Gaps = 26/390 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L + DID+A+ + P+ V +K + +PT + +GTI + + Sbjct: 17 EARVVGGAVRDRLAGRPISDIDLASPLPPEAVATRLAKAGIRAVPTGLDHGTITAVLDGR 76 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 +F+ITTLR DL TDGR+A V FT DW+ D+ RRDFTINA+ + G + DY GG +DL Sbjct: 77 HFEITTLRRDLETDGRHAVVAFTDDWREDAARRDFTINAMSMARDGTIHDYFGGRDDLAA 136 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIW 206 ++F+GD RI ED+LRILRFFRF A Y E VA+I+A K GL LS+ER+W Sbjct: 137 GIVRFVGDPTTRIQEDFLRILRFFRFHARY-EAGPPDQAAVAAIRALKGGLARLSAERVW 195 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 EI ++L A +PL A+ M G+ + + + I Q Q A D LLR Sbjct: 196 QEIKRILAAPDPLAALNLMAETGVLQVVLPEAAGIMALQRLQTRGA------PADPLLRV 249 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 LI ++ +A++ L R L + L G+ V+ Sbjct: 250 AALIG----GAVRPLARRLRLAEAERARLEAIATA------------PDLAADAGEAVLR 293 Query: 327 AKLKIFLA--LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 L + A L + D + + + ++P+FPL G D V G+ PG +G Sbjct: 294 HALADWPAETLIDRSWLAADDADRSALRARLATMERPVFPLKGRDAVAIGVAPGPAIGAA 353 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 L ++ W+ + LR+ +AS Sbjct: 354 LAAVRRWWMAHDCLPDGDACRAELRRHLAS 383 >gi|188580718|ref|YP_001924163.1| polynucleotide adenylyltransferase [Methylobacterium populi BJ001] gi|179344216|gb|ACB79628.1| Polynucleotide adenylyltransferase region [Methylobacterium populi BJ001] Length = 421 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/401 (32%), Positives = 209/401 (52%), Gaps = 13/401 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ + + +VGG VRD+L+ V DID+ATT+LP+ VM K +PT I +G Sbjct: 28 LAALDAPGEATRLVGGCVRDALLGSIVSDIDLATTLLPEAVMERAGAAGIKAVPTGIEHG 87 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 TI ++ R + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D +G++ D Sbjct: 88 TITLVVRGEPHEVTTLREDVETDGRHAVVRFGRDFSRDAERRDFTINALSLDARGRLHDT 147 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL A+I A+ L Sbjct: 148 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGRGAPDAEGLAAAIAARGSLD 207 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A + A+ + G+ I E L +L++ AE Sbjct: 208 RLSRERVRAEFLKLLLAPRAVAAVATLSETGLLLRILGGTGE--LGRLARAAGAEPA--- 262 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF---FNCNFNQKTLSIPEIKK 315 +D+ RF L + + + + + L R L + ++ ++ + Sbjct: 263 -LDATARFAAL-AVRTSEDADRLQARLRLSRAEHARLTDYAAALAALHDRPDIAAEAVPA 320 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L ++G + + L +T + + ++ +P+FP+TG D+V G+ Sbjct: 321 LVAIHGAEPLREALIALDGEPRPRVTAEARAALDRMAR---AGTRPVFPVTGADLVARGL 377 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PPG+ VG L ++ W+ E L+ + + +++ Sbjct: 378 PPGRGVGLGLKAARELWLAEGCPDDAEARERLIARALEAAK 418 >gi|91204980|ref|YP_537335.1| Poly(A) polymerase [Rickettsia bellii RML369-C] gi|157827690|ref|YP_001496754.1| Poly(A) polymerase [Rickettsia bellii OSU 85-389] gi|91068524|gb|ABE04246.1| Poly(A) polymerase [Rickettsia bellii RML369-C] gi|157802994|gb|ABV79717.1| Poly(A) polymerase [Rickettsia bellii OSU 85-389] Length = 398 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 151/402 (37%), Positives = 229/402 (56%), Gaps = 26/402 (6%) Query: 18 ILSLLNK-GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ILSLLNK GE + ++GG+VRD+L+ DIDIAT +LP+ V I S+ + K IPT + Sbjct: 18 ILSLLNKKGEAR--LIGGSVRDALLGKESYDIDIATNLLPNEVTSILSQAKIKTIPTGLK 75 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKV 135 +GTI I K+ F ITTLR D+ +GR+AKVVFT D+ D+ RRDFTINAL Y +GK+ Sbjct: 76 FGTITAILEKEQFQITTLRKDIECNGRHAKVVFTNDFAEDAERRDFTINALSYCPFKGKI 135 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 DY G DL+ R + FI AH RI EDYLRILRFFRF ++Y + ++ +G A + K Sbjct: 136 YDYFNGFEDLKQRKVVFIRAAHQRIKEDYLRILRFFRFSSYYANR-LNPEGFKACDELKS 194 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQVIEAEQ 254 GL LS ERI SE ++++ + N + M+ GI IF + EI + AEQ Sbjct: 195 GLMSLSRERIKSEFDRIIVSSNSPEVLKAMFEIGILALIFSIQNYEIKI--------AEQ 246 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAK-KFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 + ++ R+ +L+ +Q ++ + KFS I+ I F ++ ++ +I Sbjct: 247 AKSFNLELSTRYALLLYYQKDLNLKNFLDWKFSKHETIQILSILDF---IHKNIITEFDI 303 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 KK++ + + K +L L N L D I + ++ ++P FP+ G+D++ Sbjct: 304 KKIWLEHKN------YKEYL-LTANILGKIDYSQITKFINIYDSLERPKFPINGNDLLNM 356 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 I K++G L + K+ WI+ F+LS+ +L LRK +S+ Sbjct: 357 NIEQ-KEIGKKLNYLKKIWIDQDFKLSKLELVSFLRKQESSN 397 >gi|294011466|ref|YP_003544926.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Sphingobium japonicum UT26S] gi|292674796|dbj|BAI96314.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Sphingobium japonicum UT26S] Length = 402 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/390 (34%), Positives = 190/390 (48%), Gaps = 20/390 (5%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W H L +L L + + VGGAVRD L+ L V D+DIAT + P V+ Sbjct: 10 WRHRPGLDALLRALGAEQGLARFVGGAVRDGLLGLPVNDLDIATVLEPQSVIDRLKAAGI 69 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GTI + +ITTLR D+ TDGR A + +T DW+ D+ RRDFTINALY Sbjct: 70 KAVPTGIDHGTITAVINGWPVEITTLRRDVSTDGRRATIAYTDDWRKDAARRDFTINALY 129 Query: 129 ADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 AD I D+ GG+ DLR ++FIGDA RI ED+LRILR+FRF A +G D + Sbjct: 130 ADPLTHAITDFFGGVADLRAHRVRFIGDAGARIAEDHLRILRYFRFLARFGHDEPDDEAY 189 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A +A L LS ERI E+ KLL PL ++ M +GGI + +V L +LS Sbjct: 190 AACREAANSLMALSRERIADELLKLLALPRPLASLRLMVDGGILLPVLPEVDHGGLARLS 249 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 +I+ E + LR + + D + + + L + R L + + Sbjct: 250 ALIDREAA-SGTAPAALRRLAALLPPDPRVADQVGARLKLSNKARKRLATAL-----EGA 303 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 S P + L + G + I ++ I D L + ++ W P PL G Sbjct: 304 ASAPP-RALAFRIGVEGAIDRMLI------------DPSAPLNDMKLLVGWTPPRLPLGG 350 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 +++ G+ PG V L + W+ F Sbjct: 351 GALIERGLQPGPDVAKALAEVQDIWVAEGF 380 >gi|85707865|ref|ZP_01038931.1| tRNA nucleotidyltransferase [Erythrobacter sp. NAP1] gi|85689399|gb|EAQ29402.1| tRNA nucleotidyltransferase [Erythrobacter sp. NAP1] Length = 396 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 192/367 (52%), Gaps = 23/367 (6%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD+L+ ++V D+D ATT PD+V+ + + + +PT I +GT+ I + ++ Sbjct: 31 VGGAVRDTLLGVAVHDVDCATTHTPDQVIDLCADAGIRTVPTGIEHGTVTAILKDGPVEV 90 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTI 150 TTLR D+ TDGR A V F +W+ D+ RRDFTINALYA + +V DY GGL+DL R + Sbjct: 91 TTLRRDVATDGRRATVAFATEWREDAARRDFTINALYAHPETLEVSDYFGGLDDLAKRRV 150 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 +FIGDA RI ED+LRILR++RF A +G + +D + A + LK LS ER+ E+ Sbjct: 151 RFIGDARQRIAEDHLRILRYYRFQARFGAE-LDPEAEDACSELSATLKGLSRERVADELL 209 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 KLL +P I M++ + + I + ++QL ++IE E + D + R L+ Sbjct: 210 KLLSLPDPGATIERMFDRAVLRVILPETALRHVEQLRELIEREAEQGFAPDPIRRLATLL 269 Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330 +A + L + R L+S +S P + L Y G+ I +L Sbjct: 270 P-PSPDVAEGVAARLRLSKAQRAQLVS--ASERLGHDVSNPRV--LAYELGNAFAIDRL- 323 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 + + + I W+ P FPL G +V G+ G V IL ++ Sbjct: 324 ---------------LLLGEDAAAIAGWQAPTFPLKGGAIVARGVAAGPDVARILQLVEK 368 Query: 391 EWINSSF 397 W++ F Sbjct: 369 RWVSEGF 375 >gi|163850893|ref|YP_001638936.1| polynucleotide adenylyltransferase region [Methylobacterium extorquens PA1] gi|163662498|gb|ABY29865.1| Polynucleotide adenylyltransferase region [Methylobacterium extorquens PA1] Length = 424 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 204/393 (51%), Gaps = 13/393 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K K + T I +G Sbjct: 32 LTALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARKAGIKAVGTGIEHG 91 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ ++ + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D G++ D Sbjct: 92 TVTLVVGGEPHEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSLDAGGRLHDT 151 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL ASI A+ L Sbjct: 152 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAASIAARDSLD 211 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A ++A+ + G+ I V E L +L++ EAE Sbjct: 212 RLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGE--LGRLARCAEAEP---- 265 Query: 259 KIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRY--FLISFFNCNFNQKTLSIPEIKK 315 ++D+ RF L + + L + + S R + I+ + ++ + + Sbjct: 266 RLDATARFAALAVRTIEDADRLQASLRLSRAEHARLTGYAIALAALH-DRPVIEADAVPA 324 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L YG + L +T + + ++ + +P+ P+TG D+V G+ Sbjct: 325 LVATYGAGPLRELLIALDGEPRPRVTPEARTKLDRMEA---AGTRPVLPVTGADLVARGV 381 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PG+ VG L + W+ S E L+ Sbjct: 382 APGRAVGAGLRAARDLWLASGCPDDAETRERLI 414 >gi|296446273|ref|ZP_06888219.1| Polynucleotide adenylyltransferase region [Methylosinus trichosporium OB3b] gi|296256174|gb|EFH03255.1| Polynucleotide adenylyltransferase region [Methylosinus trichosporium OB3b] Length = 409 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/393 (33%), Positives = 203/393 (51%), Gaps = 9/393 (2%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + D + + + L ++ IVGGAVRDSLM ++D+ATT LP+ VM + Sbjct: 4 RLLADPKIRRLFAALAATGGETRIVGGAVRDSLMGRRPHEVDLATTALPEAVMAAAAAAG 63 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K PT I +GT+ I+ F++TTLR D+ T GR+AKV F D++AD+LRRDFTINAL Sbjct: 64 LKCAPTGIEHGTVTIVVEGTPFEVTTLREDVETFGRHAKVRFGDDFEADALRRDFTINAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + G + DY GGL DL R I+FIGD RI ED+LR+LRFFRF A +G +D GL Sbjct: 124 SLSEDGALHDYTGGLADLEARHIRFIGDPATRIAEDHLRVLRFFRFHASFGAGALDPAGL 183 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A+I A+ L+ LS+ER+ +E KLL A+ + + GI + + L++L+ Sbjct: 184 HAAILARHSLQKLSAERLRAETLKLLAARGAVAVAREVSQAGILEIVVGATFPARLERLA 243 Query: 248 QVIEAEQVFEWKIDSLLRFIVL--ISWQDKKSILSMAKKFSLP-REIRYFLISFFNCNFN 304 + +A F +D LLR I L I +D + + ++ + + Sbjct: 244 AIEDALGRF---VDPLLRLIALCVIVEEDADRLRERLRLSNIEHKRAASAARLLAKLHGA 300 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + S ++ +L ++ G L + H N D L+ + P FP Sbjct: 301 ETAPSELDLTRLLFVEGRDAARDALAL---AHAENRAPVDDDGFLRAARFLAEAPAPDFP 357 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + D++ G+ PG+ +G +L + +WI + F Sbjct: 358 VKAADLMARGLLPGRALGAVLKELQAKWIRAGF 390 >gi|240138023|ref|YP_002962495.1| putative nucleotidyl transferase/polymerase [Methylobacterium extorquens AM1] gi|240007992|gb|ACS39218.1| putative nucleotidyl transferase/polymerase [Methylobacterium extorquens AM1] Length = 424 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 200/393 (50%), Gaps = 13/393 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K + T I +G Sbjct: 32 LAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARTAGIKAVGTGIEHG 91 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ ++ + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D +G++ D Sbjct: 92 TVTLVVGGEPHEVTTLREDVETDGRHAVVRFGRDFARDAERRDFTINALSLDAEGRLHDT 151 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL ASI A+ L Sbjct: 152 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAASIAARDSLD 211 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A ++A+ + G+ I V E L +LS+ E Sbjct: 212 RLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGE--LGRLSRC----ATTEL 265 Query: 259 KIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRY--FLISFFNCNFNQKTLSIPEIKK 315 +D+ RF L + + L + + S R + I+ + ++ + + Sbjct: 266 GVDATARFAALAVRTSEDADRLQASLRLSRAEHARLTGYAIALAALH-DRPVIEADAVPA 324 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L YG + L +T + ++ + +P+ P+TG D+V G+ Sbjct: 325 LVATYGAGPLRELLIALDGEPRPRVTPAARAMLDRMEA---AGTRPVLPVTGADLVARGV 381 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PG+ VG L + W+ S E L+ Sbjct: 382 APGRAVGAGLRAARDLWLASGCPDDAEARERLI 414 >gi|260429133|ref|ZP_05783110.1| tRNA-nucleotidyltransferase 1 [Citreicella sp. SE45] gi|260419756|gb|EEX13009.1| tRNA-nucleotidyltransferase 1 [Citreicella sp. SE45] Length = 382 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 133/403 (33%), Positives = 209/403 (51%), Gaps = 29/403 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W ++L++L G ++ +VGG VR++LMN++V D+DIAT P+RV+ + Sbjct: 4 VSGDWLSCDSTQHVLAMLEAGGHEAYVVGGCVRNALMNVAVGDVDIATNARPERVVLLAE 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GT+ ++ ++TT R+D+ TDGR A V + D D+ RRDFT+ Sbjct: 64 SAGLKAVPTGIEHGTVTVVADGVGHEVTTYRADVETDGRRAVVRYADDVAEDAARRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYAD +G+++D +GGL DL R ++FIGDA RI EDYLRILRFFRF A YG+ + + Sbjct: 124 NALYADARGRMLDPLGGLPDLEARRVRFIGDAGERIREDYLRILRFFRFIAWYGDPAEGV 183 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++ L GL+ LS+ER+ E+ +LL A P AI M G+ ++ ++ Sbjct: 184 DAEALAGIAANLDGLQKLSAERVGHEMVRLLRAPEPGIAICVMAQSGVLDKVLPGASILA 243 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + L + EQV + + R L + LS ++ L Sbjct: 244 IQPL---VALEQVHGVTPEPMRRLAGLGYYDGASLRLSRGQQKRL--------------G 286 Query: 303 FNQKTLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 Q LS E I + + +G A++ + +A+ Q +Q +I Sbjct: 287 LYQSLLSSDEPIAETAWRHG-----AEIALDVAILRAASLGQPVAPFVQ--DEIAKGAGA 339 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+ D++ G+ G ++G L ++ WI S F LS++DL Sbjct: 340 TFPVKPRDLMP-GV-QGPELGEALRRLERRWIASGFMLSRDDL 380 >gi|296284409|ref|ZP_06862407.1| tRNA nucleotidyltransferase [Citromicrobium bathyomarinum JL354] Length = 390 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 127/395 (32%), Positives = 192/395 (48%), Gaps = 26/395 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + Q +W +DL ++ + G + VGGAVRD+L+ V+DID AT + P++V+ Sbjct: 1 MPQAQWTQRADLAALVEAIGPGNIR--WVGGAVRDTLLGAPVKDIDAATPLRPEQVVEAC 58 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + +PT I +GTI ++ ++TTLR D+ TDGR A V F DW+ D+ RRDFT Sbjct: 59 KAAGIRTVPTGIDHGTITVLTDGGPVEVTTLREDVSTDGRRATVAFASDWREDAARRDFT 118 Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INALYAD ++ DY GGL DL R ++FIGDA RI ED+LRILR++RF A +G + Sbjct: 119 INALYADPATLELFDYFGGLQDLEARRVRFIGDARQRIREDHLRILRYYRFQARFG-AAL 177 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + A + LK LS ER+ E+ +L +P I M+ G+ I + Sbjct: 178 DGEAEEACAELAPMLKGLSRERVAMELTAILALPDPAPTIARMHEHGVLPVILPEAGAEQ 237 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + L +++ E + D ++R L+ D + ++A + L R+ R L+ C Sbjct: 238 IAALQRLVATEAACDTAPDPIVRLSALLP-ADGSTAETVAARLRLSRKHRDLLV----CL 292 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 ++ K L Y G +L L D I W P Sbjct: 293 AAREASDAEAPKALAYTQGSACAAGRLL---------LGGSDPRV-------IAGWDIPQ 336 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 PL G ++V G+ G +V L + W+ F Sbjct: 337 LPLKGGEIVARGL-SGAEVSKTLRAVEARWVAEDF 370 >gi|254487550|ref|ZP_05100755.1| tRNA nucleotidyltransferase [Roseobacter sp. GAI101] gi|214044419|gb|EEB85057.1| tRNA nucleotidyltransferase [Roseobacter sp. GAI101] Length = 394 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 201/400 (50%), Gaps = 28/400 (7%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 +W D+D + + G VGG VR++L+ L D+D++T LP+RVM + + Sbjct: 14 RWLADADAQAVCDAVQDGGHTIYFVGGCVRNALLGLPDSDVDMSTDALPERVMALAKRAG 73 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K +PT + +GT+ ++ K F++TT R D+ TDGR A V F+ + D+ RRDFTINAL Sbjct: 74 LKTVPTGVEHGTVTVVSGGKGFEVTTFRRDVQTDGRRAVVAFSNNIDDDARRRDFTINAL 133 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185 YAD +G+VID + GL DLR R ++FI DA RI EDYLR LR+FRF A Y + K D D Sbjct: 134 YADAEGRVIDPLEGLPDLRARRVRFIEDAEARIREDYLRTLRYFRFHAWYADPAKGFDPD 193 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L A GL+ LS+ERI +E+ KLL A +P A+ M G+ I + Sbjct: 194 ALSAIASNTAGLETLSAERIGAEMQKLLSAPDPAPALAGMRQTGVLNAILPGADD---RW 250 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 +S ++ E + + + R L D + L ++K L + F Sbjct: 251 ISMLVHFEALLGMRAHWIWRLAAL-GGDDAVTRLRLSKADG------RMLEQIRDAAFEG 303 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 TLS ++ Y +G +MIA+ + L +T + VL I + FP+ Sbjct: 304 NTLS-----EIAYRHG--IMIAQGAMLL-----RACLAETPPDIAVLETIDAATQAKFPV 351 Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 D++ Y G +G L + WI S F +++ L Sbjct: 352 AAKDLMPAYA---GPALGARLAQLEAAWIASDFSATRDTL 388 >gi|85373276|ref|YP_457338.1| tRNA nucleotidyltransferase [Erythrobacter litoralis HTCC2594] gi|84786359|gb|ABC62541.1| tRNA nucleotidyltransferase [Erythrobacter litoralis HTCC2594] Length = 395 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 195/391 (49%), Gaps = 25/391 (6%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 W DL +++ +L G D VGGAVRD+L+ +V+D+D AT +LP+ VM + Sbjct: 9 PWTQRDDLASLVGVL--GADNLRWVGGAVRDTLLGDAVKDVDAATPLLPEDVMERLAAAD 66 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + +PT I +GT+ I +ITTLR D+ TDGR A V F +W+ D+ RRDFTINAL Sbjct: 67 IRTVPTGIDHGTVTAILPGGPVEITTLRKDVSTDGRRATVAFAGEWRDDAARRDFTINAL 126 Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 YAD + I D+ GGL DL R ++FIGDA RI ED+LRILR+FRF A +G + + Sbjct: 127 YADPKTLAISDFFGGLEDLEARRVRFIGDARERIREDHLRILRYFRFQARFGAELDEEAE 186 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 + A+ LK LS ER+ E+ LL +P I M G+ I + + + +L Sbjct: 187 EACAELAET-LKGLSRERVAMELLSLLALPDPAPTIARMRERGVLPVILSEAGKAEVARL 245 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 +I +E + D L R L+ + S+A + L R R L+S + Sbjct: 246 QALIASEARYSIAPDPLRRLAALLPPVATLA-ESVAARLRLSRAQRDRLVSLARRQPEDE 304 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 T + P Y + + A+ ++ LA + QD W P FPL Sbjct: 305 TRARP------LAYEEGLDNARDRLLLA-GADPAPLQD-------------WHVPQFPLK 344 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 G +V G+ G +V IL + W+ F Sbjct: 345 GGAIVARGVGAGPEVARILQGIEARWVEEGF 375 >gi|163795185|ref|ZP_02189153.1| poly A polymerase family protein [alpha proteobacterium BAL199] gi|159179583|gb|EDP64112.1| poly A polymerase family protein [alpha proteobacterium BAL199] Length = 413 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 182/365 (49%), Gaps = 15/365 (4%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD+++ L + D+D+ T P+RVM + K +PT I +GT+ ++ ++ Sbjct: 35 VGGCVRDAVLGLPIGDLDVCTPARPERVMALVRAAGLKAVPTGIEHGTVTVVADHIPVEV 94 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRNRTI 150 TTLR D+ TDGR A V FT DW D+ RRD T+NALY D G + D G GL D R I Sbjct: 95 TTLRRDVETDGRRAVVAFTDDWAEDAARRDLTLNALYLDPDGTIYDPTGQGLVDARAGRI 154 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 +F+GDA RI ED LRILRFFRF+A +GE+ D GL A + LS ER+W+E+ Sbjct: 155 RFVGDAETRIREDVLRILRFFRFWARFGEEPPDPVGLAACAALASRVPSLSGERVWAELA 214 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 KL+ A A+ M G+ ++ +++ + VIE EQ K D++ R +I Sbjct: 215 KLVVACRAAEALSAMAAAGVAACLWPGSADVA--RAVTVIEIEQSLGLKADAVRRLAAMI 272 Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330 ++ + L R + F + S PE + Y G + + Sbjct: 273 G--AVGNVEPAVSRLRLSRSEADRVRRAFRTEGGPAS-SGPERRARIYRAGSQAYLDARV 329 Query: 331 IFLALHYNNLT--HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 ++ A + QD+ W P+FP+ G+DV G+PPG G +L Sbjct: 330 LYTAAEREPVEALAQDSALAQ-------AWTPPVFPIGGNDVAALGVPPGPTTGRLLRLV 382 Query: 389 KQEWI 393 + WI Sbjct: 383 EDAWI 387 >gi|329850304|ref|ZP_08265149.1| tRNA-nucleotidyltransferase 1 [Asticcacaulis biprosthecum C19] gi|328840619|gb|EGF90190.1| tRNA-nucleotidyltransferase 1 [Asticcacaulis biprosthecum C19] Length = 401 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 139/410 (33%), Positives = 206/410 (50%), Gaps = 27/410 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILPDR 58 M IV S + + L K C+ VGG VR+ L+ + D+D++T + PD Sbjct: 1 MTRIVLTDAMKASGTRAVFAALEARGGKGCVRFVGGCVRNVLLGVPGSDLDLSTQLTPDE 60 Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 S + +PT YGTI + + ++IT+LR D+ TDGR A V +T W D+ Sbjct: 61 TEAALSAAGMRHVPTGKDYGTITAVVDGEPYEITSLREDVETDGRRAVVSYTTVWAKDAQ 120 Query: 119 RRDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDF +NALYAD +G V D G GL D+ R ++FIG+A RI EDYLRILRFFRF A Y Sbjct: 121 RRDFYVNALYADIEGLVYDPTGHGLADIAERRVRFIGEAQMRIREDYLRILRFFRFTAGY 180 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI--- 234 ++D D L A I + G+ LS ER++ E K L NPL A M +GGI I Sbjct: 181 A-LSVDPDSLQACIALQAGIDGLSGERLFGETMKTLSLANPLLAFEAMQSGGILSRIVPG 239 Query: 235 FLDVQEISLDQLSQVI----EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 ++ V E L +L +I +AE+ +DS L V I S + + Sbjct: 240 WILVGE-GLPELRAMITHSDDAERRLMALVDSGLGLGV-------NEIKSAQARLKFSQA 291 Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350 I +I+ + + +I +L Y +G + + + A+H + H+ +L+ Sbjct: 292 IGERMIAAGDVVTRLEAAEAGDIARLIYRHGRQA-VEDAVLLAAVHGDGQPHE----LLR 346 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 +++DI P FPL G D++ G+ G +VG L + EW+ + F S Sbjct: 347 LMADI---DVPKFPLKGSDLIARGMTAGPEVGQRLKQIEAEWLAADFAQS 393 >gi|114769866|ref|ZP_01447476.1| Poly A polymerase family protein [alpha proteobacterium HTCC2255] gi|114549571|gb|EAU52453.1| Poly A polymerase family protein [alpha proteobacterium HTCC2255] Length = 383 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/403 (33%), Positives = 210/403 (52%), Gaps = 31/403 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + ++W D I ++ L ++ VGG VR+SL+ L + DIDI+T PD ++ + Sbjct: 3 INNRWLKSKDTIKVMDALKCRNNQVLFVGGCVRNSLLGLPITDIDISTNARPDEIINLAK 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K K IPT I++GTI II K F++T+ R D+ TDGR+A V ++ + D+ RRDFTI Sbjct: 63 KAGLKSIPTGINHGTITIISNNKAFEVTSFRKDIKTDGRHATVAYSDKIEDDAERRDFTI 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 NA+Y G +ID + G+ DL+ R ++FI D + RI+EDYLRILRFFRF A YG+ + I Sbjct: 123 NAIYMTTDGIIIDPLNGMKDLKKRHVRFIKDPNKRIIEDYLRILRFFRFTAEYGDPDLGI 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A G+ +L+ ER+ SEI K+L+ +NP + + M GI I + Sbjct: 183 DAEGLSACAANIDGIALLAKERVGSEIRKILKTQNPSSVLAAMEISGILSNILPGTACKN 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + L +E + W + R IVL D + L ++ K E + + + N Sbjct: 243 MPTLIH-LENKNTINW----ITRLIVL-GGADPTNSLRLSNK-----ENKEYKSTLKAIN 291 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +K +I + +G+ + + AL + + LSD I + Sbjct: 292 MGEKPSAIS------FKFGEIIAYSYSLAIAALTETSPPND--------LSDQIAKGSSV 337 Query: 363 -FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+ D+ GK++G++L K WI S F L+ +DL Sbjct: 338 KFPIKPQDLHNL---EGKQLGDMLKKLKSIWIKSDFTLTNKDL 377 >gi|218529716|ref|YP_002420532.1| polynucleotide adenylyltransferase region [Methylobacterium chloromethanicum CM4] gi|218522019|gb|ACK82604.1| Polynucleotide adenylyltransferase region [Methylobacterium chloromethanicum CM4] Length = 428 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 200/381 (52%), Gaps = 13/381 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K + T I +G Sbjct: 36 LAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARTAGLKAVGTGIEHG 95 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ ++ + +++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D +G++ D Sbjct: 96 TVTLVVSGEPYEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSLDAEGRLHDT 155 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL ASI A+ L Sbjct: 156 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAASIAARDSLD 215 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A ++A+ + G+ I V E L +L++ AE Sbjct: 216 RLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGE--LGRLARCAAAEP---- 269 Query: 259 KIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRY--FLISFFNCNFNQKTLSIPEIKK 315 ++D+ RF L + + L + + S R + I+ + ++ + + Sbjct: 270 RLDATARFAALAVRTLEDTDRLQASLRLSRAEHARLTGYAIALAALH-DRPVIEADAVPA 328 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L +G + +L I L D +L + + + P+TG D+V G+ Sbjct: 329 LVATHGAGPL-RELLIALDGEPRPRATPDARAVLDRME--AAGTRLVLPVTGADLVARGV 385 Query: 376 PPGKKVGNILVHCKQEWINSS 396 PG+ VG L + W+ S Sbjct: 386 APGRAVGAGLRAARDLWLASG 406 >gi|254560584|ref|YP_003067679.1| nucleotidyl transferase/polymerase [Methylobacterium extorquens DM4] gi|254267862|emb|CAX23728.1| putative nucleotidyl transferase/polymerase [Methylobacterium extorquens DM4] Length = 424 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 199/381 (52%), Gaps = 13/381 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM + K + T I +G Sbjct: 32 LAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACAREAGLKAVGTGIEHG 91 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 TI +I + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D +G++ D Sbjct: 92 TITLIVGGEPHEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSLDAEGRLHDT 151 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL ASI A+ L Sbjct: 152 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAASIAARDSLD 211 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A ++A+ + G+ I V E L +L++ AE Sbjct: 212 RLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGE--LGRLARCAAAEP---- 265 Query: 259 KIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRY--FLISFFNCNFNQKTLSIPEIKK 315 +D+ RF L + + L + + S R + I+ + ++ + + Sbjct: 266 HLDATARFAALAVRTIEDADRLQASLRLSRAEHARLTGYAIALAALH-DRPVIEADAVPA 324 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L Y + + +L I L +L + +P+ P+TG D+V G+ Sbjct: 325 LVATY-EASPLRELLIALDGEPRPRVTPAARAVLDRME--AAGTRPVLPVTGADLVARGV 381 Query: 376 PPGKKVGNILVHCKQEWINSS 396 PG+ VG L + W+ S Sbjct: 382 APGRTVGAGLRAARDLWLASG 402 >gi|58584420|ref|YP_197993.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418736|gb|AAW70751.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 399 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 133/377 (35%), Positives = 205/377 (54%), Gaps = 19/377 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++ V DID+AT +LP +V+ K IPT + +GTI + ++ F+ Sbjct: 31 LVGGCVRDSILQRKVHDIDLATNLLPSQVIEALKFHNIKAIPTGLKHGTITAVLNQRSFE 90 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYA++ G + DY GG DL+ R + Sbjct: 91 ITTLRHDVKCDGRHAKVEFTDNWRADASRRDFTFNALYANKYGHIYDYFGGTQDLKARRL 150 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 FIG+A RI EDYLRILR FRF A ++ L K + LS ERI E+ Sbjct: 151 NFIGNAEDRIKEDYLRILRAFRFHAKICIGDMSDKILNVCKKHAHKIYNLSGERIRDEMF 210 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 KLLE P+ + M + ++I +E+ + LS F + D+L++ +L+ Sbjct: 211 KLLEYDAPVPTLKSMQKSDVLQKII--PKEVKCEILS------SAFLFGTDALVKLALLL 262 Query: 271 SWQDKKSILSMAK---KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 +K LS+ + KF + + F N + L+ E +K L G ++ Sbjct: 263 RTTEKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNNIKTELTEKEQRKYISLLGKELYCD 322 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 +K+ N+ + L+ +++ +K FPL+GDD++ G PGK +G L Sbjct: 323 LVKVCGVESGANVDEYIS------LAQVLNIQK--FPLSGDDLINIGYQPGKNLGRNLKL 374 Query: 388 CKQEWINSSFQLSQEDL 404 +Q W +SS+ L++++L Sbjct: 375 LRQHWEDSSYTLTKKEL 391 >gi|330993897|ref|ZP_08317828.1| tRNA-nucleotidyltransferase 1 [Gluconacetobacter sp. SXCC-1] gi|329759028|gb|EGG75541.1| tRNA-nucleotidyltransferase 1 [Gluconacetobacter sp. SXCC-1] Length = 397 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 195/385 (50%), Gaps = 20/385 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L V DID+AT PD V KV+PT +++GT+ + + F+ Sbjct: 17 LVGGAVRDLLCGRGVADIDLATPHAPDVVTARLKDAGIKVVPTGLAHGTVTAVLDGRPFE 76 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D TDGR+A V +T DW+ D+ RRDFTINA+ D G V DY GG DL + Sbjct: 77 ITTLRRDEETDGRHATVAWTHDWREDAARRDFTINAMSCDSAGVVHDYFGGRADLAAGRV 136 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEI 209 +F+G+A RI+ED LRILRFFRF A YG+ D++ + A+I A GL LS ERIWSE+ Sbjct: 137 RFVGEARTRIVEDALRILRFFRFQARYGQSTPDAEAM-AAITALAGLIDRLSVERIWSEL 195 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 ++L + + + M G+ + I L L+++I D++LR + Sbjct: 196 RRILAGPHVIVTLEQMAGCGVLAHVLPPPWNIGL--LARLIACGA----PEDAVLRLAAM 249 Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG--DKVMIA 327 + + + ++A+ L R L + + +I +L +G D + A Sbjct: 250 L----EGDVQAVARHLRLSRADGAALAQARATPVPRPGMDKADIARLLADHGLRDLLWRA 305 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 L A+ + +L + KP+FPLTG D++ G PG +G +L Sbjct: 306 WLGQAAAVGAPDPAWDALRGVLVATA------KPVFPLTGRDLLAAGCVPGAAMGQVLAQ 359 Query: 388 CKQEWINSSFQLSQEDLHHLLRKLI 412 ++ W+ + + +R ++ Sbjct: 360 VRRWWLENGCTPTHAACQAHMRAVL 384 >gi|85706914|ref|ZP_01038004.1| Poly A polymerase family protein [Roseovarius sp. 217] gi|85668525|gb|EAQ23396.1| Poly A polymerase family protein [Roseovarius sp. 217] Length = 381 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/403 (33%), Positives = 200/403 (49%), Gaps = 28/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W + +L+ ++ VGG VR++L+ +V DIDIAT P+ VM + + Sbjct: 3 VSGAWIEAEATQAVCRMLSGAGHQALFVGGCVRNALLGETVADIDIATDARPEVVMDLAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GTI ++ ++TT R D+ T GR+A V F+ D +D+ RRDFT+ Sbjct: 63 AAGLKPVPTGIEHGTITVVSSHIPHEVTTFREDVETFGRHAVVAFSMDIHSDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G VID + GL DLR R ++FI +A RI EDYLRILRFFRF A YG E + Sbjct: 123 NALYAQADGTVIDPLAGLEDLRARRVRFIENADQRIREDYLRILRFFRFHAWYGDPEGGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D+DGL A GL LS ER+ +E+ KLL A +P ++ M G+ + Sbjct: 183 DADGLAACAANLDGLARLSRERVGAEMCKLLGAPDPARSVAAMQAAGVLNAVLPGA---G 239 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L+ ++ E D++LR L S+A++ L + L + Sbjct: 240 ARPLALLVHQETETNTAPDAILRLAALGGE-------SVAERLRLSKSDTRRL-----AH 287 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +K + + +L Y YG + + + L L L +T + D+ Sbjct: 288 LQEKAAGLMQAAELGYRYG----VEEGQAILLLRGAWL---ETLVSPETAEDLKMGAAAR 340 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+ D++ Y G +G L ++ WI+S F LS++DL Sbjct: 341 FPVAATDLMPDYS---GPALGARLQALERRWIDSRFALSRDDL 380 >gi|149204355|ref|ZP_01881322.1| Poly A polymerase family protein [Roseovarius sp. TM1035] gi|149142240|gb|EDM30287.1| Poly A polymerase family protein [Roseovarius sp. TM1035] Length = 381 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/403 (33%), Positives = 200/403 (49%), Gaps = 28/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W D + ++L + ++ VGG VR++L+ + V DIDIAT P+ VM + Sbjct: 3 VSGAWIEDKATQAVCAMLTEAGYQALFVGGCVRNALLEMPVGDIDIATDARPEMVMELAH 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +PT + +GTI ++ ++TT R D+ T GR+A V F D + D+ RRDFT+ Sbjct: 63 AAGLRPVPTGLEHGTITVVSGHIGHEVTTFREDVQTFGRHAVVAFANDLRTDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G V+D +GGL DLR R ++FI DA RI EDYLRILRFFRF A YG E + Sbjct: 123 NALYAQTDGAVVDPLGGLEDLRARRVRFIEDADQRIREDYLRILRFFRFHAWYGDPEGGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + Sbjct: 183 DAEGLAACAGNVEGIVGLSRERVGAEMRKLLAAPDPAPSVAAMQATGVLAVVLPGSDARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + E D++LR L ++A++ L R L S Sbjct: 243 LPLL---VHLESETNTAPDAILRLAALGGE-------AVAERLRLSRAEARRLDSLRGAA 292 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + +L Y +G A L + AL N +D D+ K Sbjct: 293 ADMM-----HAAELGYRHGIAEGRAILLLRAALLENTWQARDA-------EDLAKGAKAR 340 Query: 363 FPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+T D++ +Y G +G L ++ WI S F L+++DL Sbjct: 341 FPVTAADLMPEY---TGPALGERLHALERRWIESGFALTRDDL 380 >gi|156397420|ref|XP_001637889.1| predicted protein [Nematostella vectensis] gi|156225005|gb|EDO45826.1| predicted protein [Nematostella vectensis] Length = 414 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 138/413 (33%), Positives = 212/413 (51%), Gaps = 22/413 (5%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K H +L+ + S+ K + IVGGAVRD LM +DID+ T P++++++F Sbjct: 14 KAIHTPELLRLSSVFTKHGYELRIVGGAVRDLLMGKLPKDIDLCTNATPEQMIKMFKDEE 73 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + I T + +GT+ K F++TTLR D+ TDGR+AKV FT DW+ D+ RRD T NA+ Sbjct: 74 IRCIETGLQHGTLTAHINKTDFEVTTLRIDVETDGRHAKVKFTNDWQLDAERRDLTFNAM 133 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSD 185 D G + DY G DLR ++F+GDA RI EDYLRILR+FRF+ + N D D Sbjct: 134 SVDLTGNLYDYFNGEIDLRKGHVRFVGDARLRIKEDYLRILRYFRFYGKIATEPDNHDPD 193 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-LD 244 L + +GL+I+S ERIW E++K+L + + + +Y+ GI I L + S + Sbjct: 194 TLAVIKELAEGLRIISVERIWLEVSKILIGNHAQHLLQMLYDLGIASNIGLPTYDASCMT 253 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 + + + Q+F + +LL L++ + IL+ K S I+ Sbjct: 254 EFHRAWKESQIFSLQPVTLL--CCLVNTACEAEILARHWKLSNAERNLGKFITEHRLPKE 311 Query: 305 QKTLSIPEIKKLFYLYGDKVMI---AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 +T P Y D +++ A+ K L H L H ++ I W P Sbjct: 312 HETPLKP--------YQDMLVVSPSAQSKETLRGHITELLHYQGRH--ELGEAIACWIIP 361 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRK 410 FP+TGD + G+ PG + G L KQ W S + ++EDL HH++++ Sbjct: 362 SFPVTGDHLKSIGLKPGPEFGRTLSQLKQMWRESYYVATKEDLLEKAHHMIKR 414 >gi|149185903|ref|ZP_01864218.1| tRNA nucleotidyltransferase [Erythrobacter sp. SD-21] gi|148830464|gb|EDL48900.1| tRNA nucleotidyltransferase [Erythrobacter sp. SD-21] Length = 391 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 131/415 (31%), Positives = 207/415 (49%), Gaps = 25/415 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M ++ W DL +++ L G D + VGGAVRD+L+ ++ D+D+AT +LP V+ Sbjct: 1 MATLPNADWTKREDLAQLIAAL--GADNARYVGGAVRDTLLGKAIHDVDLATPLLPHEVI 58 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + + +PT I +GT+ I + +ITTLR D+ +DGR A V F ++WK D+ RR Sbjct: 59 DRCREAGIRTVPTGIDHGTVTAILPEGPVEITTLRRDVSSDGRRATVAFAQEWKDDASRR 118 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYA ++ D+ GG+ DL ++FIG+A RI ED+LRILR+FRF A +G+ Sbjct: 119 DFTINALYAHPGSLEIEDFFGGVADLERGHVRFIGEAEERIREDHLRILRYFRFQARFGD 178 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + + A LK LS ER+ E+ +L P I M G+ + I + + Sbjct: 179 A-LDEEAVNACRDLAHTLKGLSRERVAMELLAILALPAPSPTIGLMKELGVLEVILPEAR 237 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + L+Q++EAE D++ R L+ K S+A + L R+ R L+ Sbjct: 238 DRETQCLAQLVEAEAREGVDGDAVRRLAALLP-PIKSVAESVAARLRLSRQQRARLV--- 293 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 C ++ + L Y G V A+ ++ L + ++ + W+ Sbjct: 294 -CAAERREEDAAAPRALAYFEG--VEGARDRLLLK--------------GESVAALRDWE 336 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P PL G ++V G+ G +V L + W+ F L L +L AS Sbjct: 337 VPQLPLKGGEIVARGVGAGPEVARTLRAVEARWVEEGFPDRSRVLELLEHELAAS 391 >gi|83950749|ref|ZP_00959482.1| Poly A polymerase family protein [Roseovarius nubinhibens ISM] gi|83838648|gb|EAP77944.1| Poly A polymerase family protein [Roseovarius nubinhibens ISM] Length = 378 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 132/405 (32%), Positives = 200/405 (49%), Gaps = 35/405 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 ++ W + L +L++L + IVGGAVR+++M L V D+DIAT P RVM + Sbjct: 3 IEGDWLDAAPLRAVLAMLEAAGHRGLIVGGAVRNAVMGLPVTDMDIATDARPKRVMALAE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +PT + +GT+ ++ ++ F+ITT R D DGR+AKV FT D D+ RRDFT+ Sbjct: 63 AAGLRAVPTGLDHGTVTVVSGEEPFEITTFRRDEEADGRHAKVAFTDDLAEDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NALYA G VID V G+ D R ++FI DA RI EDYLRILRFFRF A YG +D Sbjct: 123 NALYAQGDGTVIDPVDGVADARAGRVRFIEDAGRRIEEDYLRILRFFRFNAIYGRDGLDP 182 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEIS 242 + L A + GL+ L+ ER+ +E+ KLL A P ++ M G+ + DV + Sbjct: 183 EALAAIAEHLDGLERLARERVGAEMRKLLAAPEPSMSLAAMAQCGVLMRVLPGADVSAVP 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 V+ A + +R + LI ++ + L ++K + S Sbjct: 243 ------VLVALETHAGAPPEAMRRLALIGGEEVEDRLRLSKNET----------SVLR-R 285 Query: 303 FNQKTLSIPEIKKLFYLYGDKVM--IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + ++ + L Y +G + I L++ L L Q + Q I Sbjct: 286 YRDGIAAVDDPATLGYRHGAEAARDIVLLRMALGL------PQPEDWPAQ----IRRGAG 335 Query: 361 PLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P+T D++ +Y G +G L + WI S F ++EDL Sbjct: 336 ARCPVTARDLMPEY---EGAALGAKLKEIEARWIASGFTKTKEDL 377 >gi|84685765|ref|ZP_01013661.1| polyA polymerase family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665858|gb|EAQ12332.1| polyA polymerase family protein [Rhodobacterales bacterium HTCC2654] Length = 387 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/404 (32%), Positives = 203/404 (50%), Gaps = 30/404 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W +D ++ ++L ++ VGG VR++L+ V D+DI+T P+ V ++ Sbjct: 6 ITETWLYDPVAQSVCAMLTSAGYQAHFVGGCVRNALIGAPVTDLDISTNAHPETVSKLAR 65 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K + +PT I +GT+ ++ F++TT R D+ TDGR A V F + D+ RRDFT+ Sbjct: 66 KAGFHAVPTGIDHGTVTVVADGHPFEVTTWRKDVETDGRRAVVAFADRLEDDARRRDFTM 125 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 NALYA G++ID +GGL DL R ++FI DAH RI EDYLRILRFFRF+A YG+ + + Sbjct: 126 NALYAAPDGQIIDPLGGLQDLLARKVRFIDDAHDRIREDYLRILRFFRFYAWYGDADAGL 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A + +G+ LS ER+ SE+ KLL A +P ++ M G+ I D+ + Sbjct: 186 DPDALTAISELSEGIDTLSRERVGSEVVKLLAAPDPAPSVAAMAASGVLARIMPDLNPKA 245 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + EQ D++ R VL D K L ++ + R + L Sbjct: 246 LPIL---VHFEQDRGVAPDAMRRLAVL-GGCDHKDALRLSNLDA--RRLDTLL------- 292 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKK 360 + S + L Y G V + + AL D C Sbjct: 293 --EHRGSTEKPAALGYRLGADVARDAVLVNAALMETPPPDDFIDACSA---------GSH 341 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + P+T +D++ G ++G L + EWI+S F+L++E L Sbjct: 342 AVLPVTANDLMPRFQ--GAELGARLKALETEWIDSGFKLTREQL 383 >gi|296116685|ref|ZP_06835295.1| putative tRNA nucleotidyltransferase [Gluconacetobacter hansenii ATCC 23769] gi|295976897|gb|EFG83665.1| putative tRNA nucleotidyltransferase [Gluconacetobacter hansenii ATCC 23769] Length = 434 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 194/374 (51%), Gaps = 24/374 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L +V D+D+AT + P VM +V+PT +++GT+ + + ++ Sbjct: 59 LVGGAVRDLLCGRTVSDMDMATALPPQDVMARLGAAGIRVVPTGLAHGTVTAVLEGRPYE 118 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D TDGR+A+V +T DW+ D+ RRDFTINA+ D+ G V D GG DL + Sbjct: 119 ITTLRRDEQTDGRHAQVAWTDDWREDAARRDFTINAMSCDRAGVVHDPFGGRADLAAGRV 178 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 +F+GDAH RI ED LRILRFFRF A YG D+D + A+ ++ LS ERIWSE+ Sbjct: 179 RFVGDAHARITEDALRILRFFRFNARYGGDVPDADAMAAATALAPMVERLSVERIWSELR 238 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 ++L + M +GG+ I + ++S +L +++ D+LLR L Sbjct: 239 RILSGPRVAATLALMEHGGVLARILPEGYDLS--RLGRLLACYG----PADALLRCAALF 292 Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKV 324 + +A++ L R F+ + + + ++ EI ++ + Sbjct: 293 V----GDMQVVAQRLRLSRADERFVRAVHDGALHGGGDGLHPGMTGAEIARMLVADPTDI 348 Query: 325 MIAK--LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382 +IA+ L+ L ++ D I I +P+F L G DVV G PPG +VG Sbjct: 349 LIARTWLRQGEVLGRPDVGWDDLRAI------ITRCPRPVFTLAGRDVVAAGCPPGPRVG 402 Query: 383 NILVHCKQEWINSS 396 IL + W++ Sbjct: 403 AILAQVRDWWLSGG 416 >gi|83591706|ref|YP_425458.1| polynucleotide adenylyltransferase region [Rhodospirillum rubrum ATCC 11170] gi|83574620|gb|ABC21171.1| Polynucleotide adenylyltransferase region [Rhodospirillum rubrum ATCC 11170] Length = 525 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/426 (28%), Positives = 203/426 (47%), Gaps = 31/426 (7%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMN---LSVQDIDIATTILPDRVMRIFSK 65 W D + +++ L ++ VGG VRDSL+ L DIDIATT P+RV+ + Sbjct: 76 WLVDPRTVAVMTALTAEGGEARFVGGCVRDSLLRRDPLRPMDIDIATTERPERVIALIEA 135 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 K +PT +++GT+ ++ K F++TTLR D DGR+A+V FT ++ D+ RRDFTIN Sbjct: 136 AGLKAVPTGLAHGTLTVVAGGKPFEVTTLRRDTACDGRHAEVAFTTSFREDAGRRDFTIN 195 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 AL AD++G+V DY G++DL ++FIG RI EDYLRILRFFRF A +G D D Sbjct: 196 ALSADREGRVFDYFDGISDLHAGWVRFIGRPMDRIAEDYLRILRFFRFHARFGRPPADPD 255 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L A GL LS+ER+ SE+ K+L+ +P ++ M + + + + +++ + Sbjct: 256 ALSACAAQAAGLDRLSAERVRSELLKILDTADPAGVLMAMRGVHVLERVLPEAGDVTNLR 315 Query: 246 LSQVIEAEQVF--EWKIDSLLRFIVLI-------------------SWQDKKSILSMAKK 284 + ++E + D L R ++ S + S ++ + Sbjct: 316 MLTLLETRGLMLPGLGADPLRRLACVVGPPALSAGSGPPALSAVAGSDPSRDSGAALGAR 375 Query: 285 FSLPREIRYFLISFFNCNFNQ---KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 L R L + + +++L G ++I + + A Sbjct: 376 LRLSRAETARLTGMLDAPAGRWPDPDAGEGALRRLLDGEGKDLVIDRALLRWAAERGKGP 435 Query: 342 H---QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 + + T ++ + W P FPL G D + G+ G VG L + W+ Q Sbjct: 436 YPRAERTARWRALIETALGWTAPTFPLGGRDALACGL-KGPAVGEALAALRGRWLEGGCQ 494 Query: 399 LSQEDL 404 ++++ Sbjct: 495 AGRDEM 500 >gi|304322137|ref|YP_003855780.1| putative poly(A) polymerase [Parvularcula bermudensis HTCC2503] gi|303301039|gb|ADM10638.1| possible poly(A) polymerase [Parvularcula bermudensis HTCC2503] Length = 398 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/417 (31%), Positives = 199/417 (47%), Gaps = 38/417 (9%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV-----QDIDIATTILPDRVMRIF 63 W D +L++LN+ E ++ VGG +RDSL+ DIDIATT+LP+ +++ Sbjct: 8 WARSGDAAKLLAILNE-EGEARFVGGCIRDSLLGQPPGAAGHTDIDIATTLLPEETLKLL 66 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + +VIPT + +GT+ + F+ITTLR D+ TDGR+A V FT DW+ D+ RRDFT Sbjct: 67 GRHGIRVIPTGLEHGTVTAVLSAVPFEITTLRCDVATDGRHATVSFTEDWEKDAARRDFT 126 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 INAL D++G++ DY G DL R ++FIG RI EDYLRILRF RF A +G +D Sbjct: 127 INALSLDKEGRLYDYHDGRADLMARRVRFIGRPAQRIKEDYLRILRFMRFSARFG-GTLD 185 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 G AS GL LS ERIWSE+++L A + G I I +++ Sbjct: 186 VAGWQASEALAGGLLHLSKERIWSEVSRLFCAAGAPTVLSEAAKGPILDAII----QVAP 241 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 D +S F + + ++ + P R L S F Sbjct: 242 DPVS------------------FARIHAAREGAPSAGLCLAALWPTATRSMLQSAFKPPT 283 Query: 304 N--QKTLSIPEIKKLFYLYGDKVMI----AKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + L++PEI K++ + + L L+ I++ L+ Sbjct: 284 SVLAHALTLPEIAKVWEAGATPREVLFSYGRPAAEEGLALCRLSAAAKAEIVRALTTA-- 341 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P+ P+ G D + G+ G VGN L + W ++F + L +++A+ Sbjct: 342 -PVPVLPVRGADFIAAGLTAGPMVGNALKDFTERWAQANFPEDPAIVRSLFDEVMAA 397 >gi|84500746|ref|ZP_00998995.1| polyA polymerase family protein [Oceanicola batsensis HTCC2597] gi|84391699|gb|EAQ04031.1| polyA polymerase family protein [Oceanicola batsensis HTCC2597] Length = 386 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/400 (31%), Positives = 198/400 (49%), Gaps = 30/400 (7%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + + ++L ++ VGG VRD+L+ V DIDIAT P +VM + Sbjct: 7 WLDHPGTVAVCAMLTAAGYRALFVGGCVRDALLGRPVGDIDIATDARPMQVMDLAEAAGI 66 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT +GT+ ++ ++TT R D+ TDGR+A V ++ D D+ RRDFT+NALY Sbjct: 67 KAVPTGFDHGTVTLVSHGLEHEVTTFRRDVETDGRHALVHYSDDPAEDAARRDFTMNALY 126 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG 186 A +G+++D +GGL DLR R ++F+G+ RI+EDYLRILRFFRFFA YG+ + +D + Sbjct: 127 ATPEGEIVDPLGGLPDLRARRLRFVGEPAARIIEDYLRILRFFRFFAWYGDPSQGMDPEA 186 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A GL LS ER+ E+ KLL A +P A+ M G + + +L L Sbjct: 187 LAAIAGHVDGLSRLSRERVGHEMRKLLMAPDPSFAVAAMRQAGALSAVLPGSDDRALGPL 246 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + EQ + D + R + ++ D L +++ S + Sbjct: 247 ---VHHEQALDVPPDPIRR-LAAVTGDDPGPALRLSRAESR-----------RHATLRDA 291 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +L Y +G+ A L I L L + L H + + + +FP+ Sbjct: 292 VGGTEGAAELGYRFGEA---AALDILL-LRWALLEHPGDP---RQVEQVRRGAAAVFPVR 344 Query: 367 GDDVVKYGIP--PGKKVGNILVHCKQEWINSSFQLSQEDL 404 +D+ +P G +G+ L ++ WI S F L+++ L Sbjct: 345 AEDL----MPDLSGAALGDRLKQLERRWIRSGFALTRDQL 380 >gi|297717904|gb|ADI50095.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13] Length = 379 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/377 (34%), Positives = 195/377 (51%), Gaps = 29/377 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD+L+ L+ DID+A+ + P++ + + + Y VIPT + +GT ++ K ++I Sbjct: 25 VGGCVRDTLLGLTPNDIDLASPLPPEQGLALLAAQGYTVIPTGMEHGTFTLVIDKVPYEI 84 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 TTLR D+ TDGR A + +T W+ D+ RRDFTINALY D G + DY G DL+ T++ Sbjct: 85 TTLRRDVATDGRRATIAYTDKWEEDAARRDFTINALYMDFDGTIYDYANGQQDLKKGTVR 144 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINK 211 FIG A RI EDYLRILRFFRF + ++ + + K +K LS+ERI E Sbjct: 145 FIGQAADRIQEDYLRILRFFRFHQRFSKQPVSCELKAIFQKFSPQIKTLSAERITKEFLL 204 Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271 LLE+ NPL + M I + FL+ E LD L +++ E +L RF L Sbjct: 205 LLESSNPLLELSIMDECQILPQ-FLESYE--LDNLKLLLDMEMSVSAAPSALRRFHALKC 261 Query: 272 WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 + + + K+ N + +S + L Y YG + L I Sbjct: 262 SSHQLRLSNKQSKY------------LAALNLLEAEMSSHSLFYLAYKYG---LPEILDI 306 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 F L Q++ L+ S +I P FPL G D++ GI PG ++G L + + Sbjct: 307 F-------LVRQESKRWLEFKSLVI----PPFPLNGQDLITIGIKPGARLGKALNDAEYQ 355 Query: 392 WINSSFQLSQEDLHHLL 408 W S ++L++E+L L Sbjct: 356 WAASEYKLTKENLLQYL 372 >gi|163745090|ref|ZP_02152450.1| polyA polymerase family protein, putative [Oceanibulbus indolifex HEL-45] gi|161381908|gb|EDQ06317.1| polyA polymerase family protein, putative [Oceanibulbus indolifex HEL-45] Length = 386 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/402 (33%), Positives = 202/402 (50%), Gaps = 32/402 (7%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 +W HD D + ++ G + VGG VRD+L+ L D+D++T P+ VM + Sbjct: 7 RWLHDEDAQQVCRVVQDGGYRIYFVGGCVRDALLGLPDSDVDLSTDAPPETVMALARAAG 66 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K +PT I +GT+ ++ K F+ITT R D+ TDGR A V F+ D D+ RRDFT+NAL Sbjct: 67 VKAVPTGIDHGTVTLVAGGKPFEITTFRRDVETDGRRAVVAFSSDIAEDARRRDFTMNAL 126 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSD 185 YA G+V+D +GGL DL R ++FI +A RI EDYLR LR+FRF A YG + + D Sbjct: 127 YATPDGQVLDPLGGLPDLHARRLRFIENAEQRIREDYLRTLRYFRFMAWYGSPQVGPEPD 186 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L A GL+ LS+ER+ E KLL A +P A+ M G + S D+ Sbjct: 187 ALDAIASNLDGLETLSAERVGQEFRKLLRASDPAPALALMRQTGALPVLLPG----SDDR 242 Query: 246 -LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 +S ++ E D L+R L + L ++K E++ + Sbjct: 243 WISMLVHFEHALGLTPDWLVRLAAL-GGEGLTDRLRLSKV-----EVKRLAL------LQ 290 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-DTCFILQVLSDIIHWKKPLF 363 + + P + +L Y +G +V A AL + Q +L+ +S + F Sbjct: 291 EHGFAGPPLSELAYRHGAEVAQAA-----ALLRGCMAEQMPENAVLETISRTAQAR---F 342 Query: 364 PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P++ D++ K+ G ++G L +Q WI S F LS+ +L Sbjct: 343 PVSAKDLMPKFK---GPELGCELARLEQLWIASGFTLSRAEL 381 >gi|126730078|ref|ZP_01745890.1| polyA polymerase family protein [Sagittula stellata E-37] gi|126709458|gb|EBA08512.1| polyA polymerase family protein [Sagittula stellata E-37] Length = 387 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 134/403 (33%), Positives = 196/403 (48%), Gaps = 29/403 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W +L++L G ++ VGG VR++L+ V D+D++T P+RV+ + Sbjct: 4 VTGDWLTAPGAQAVLTMLEAGGHRAYAVGGCVRNALLGEPVADVDVSTDARPERVIELAR 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +PT I +GT+ I+ +++TT R+D+ TDGR A V F D D++RRDFT+ Sbjct: 64 AAGLRAVPTGIDHGTVTIVANGTGYEVTTFRADIETDGRRAVVRFADDVAEDAVRRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALY D+ G++ D +GGL DL R ++FI DA RI EDYLRILRFFRF+A YG + + Sbjct: 124 NALYVDRHGEITDPLGGLPDLMARRLRFIEDADRRIREDYLRILRFFRFYAWYGDPQAGV 183 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D+D L A GL+ LS ER+ E+ KL A +PL A M G+ + + E Sbjct: 184 DADALAAIAANLDGLETLSRERVGQELLKLFAAPDPLAATAVMARAGVLQAVLPGASETP 243 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L +E E + D L R + ++ + S +K L E LIS Sbjct: 244 LGPL---LEHETTLDLPPDPLRRLAAIGAFDGEALRFSKVQKKRL--EQYQGLIS----- 293 Query: 303 FNQKTLSIPEIKKLFYL-YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + +PE+ F V++ + F A DT L I K Sbjct: 294 ---DPIPLPEVAYRFTADMARDVLVLRAATFGA-------PLDTS----ALPRIKRAAKA 339 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+ D+ G +G L + EWI S F L + L Sbjct: 340 RFPVAASDLKDRFQ--GPALGEALRRLEAEWIASDFALDKATL 380 >gi|114328297|ref|YP_745454.1| poly(A) polymerase [Granulibacter bethesdensis CGDNIH1] gi|114316471|gb|ABI62531.1| poly(A) polymerase [Granulibacter bethesdensis CGDNIH1] Length = 413 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/409 (29%), Positives = 215/409 (52%), Gaps = 28/409 (6%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W D L ++L++L + VGG VRD+L V DID+A + P++ ++ + Sbjct: 12 WLDDPALQDVLAVLPQARP----VGGCVRDALAGRPVADIDLAVPMPPEQTLQRLEQAGL 67 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 IPT +S+GT+ + R ++F+IT+LR DL TDGR+A+V FT DW+ D+ RRDFTINA+ Sbjct: 68 HSIPTGLSHGTVTAVSRGQHFEITSLRRDLATDGRHAEVSFTDDWQEDAARRDFTINAMS 127 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD- 185 G + DY GGL+DLR ++F+G A R+ ED LR LRFFRF A YG E+ + D Sbjct: 128 LSPDGTLHDYFGGLDDLRAGRVRFVGQAGRRVAEDRLRALRFFRFQARYGRWEQGTEPDA 187 Query: 186 GLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-- 242 + +I A G L LS+ER+WSE+ ++L + + M G+ +F + + Sbjct: 188 AAMQAITAMAGELTQLSAERVWSELRRILTGPHLAAILAAMEQTGVLPVLFPAGYDPAPL 247 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 ++ ++ + E + E +++ R +L+ K+ ++A++ L + L + + + Sbjct: 248 VEAVANGMPGEGLAE---EAIPRLALLVG--AKEPPRALAERLRLSGQEAGRLTTCLDGS 302 Query: 303 FN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + +++L + +I + + L + + ++L+ + + Sbjct: 303 VPVWDGAADMVSLRRLLADDPAQALIDRAWVM-------LRDERAAHLTRLLTPL---SR 352 Query: 361 PLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P FPL G D++ G+ PG +G++L + EW+ + +E+ LL Sbjct: 353 PNFPLAGRDLLAAGLAVPGPALGHLLDTLRTEWLRRGCREGEEEKAALL 401 >gi|288958320|ref|YP_003448661.1| poly(A) polymerase [Azospirillum sp. B510] gi|288910628|dbj|BAI72117.1| poly(A) polymerase [Azospirillum sp. B510] Length = 430 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/428 (31%), Positives = 203/428 (47%), Gaps = 34/428 (7%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + W + + L G + VGG VRD+ + V+DIDIAT P+RVM + Sbjct: 18 LSPQPWMTAPESRALFDALASGGADARFVGGCVRDAWLGRPVKDIDIATHAPPERVMELL 77 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 +VIPT +++GT+ +C K ++ITTLR D+ + GR+A+V FT DW D+ RRD T Sbjct: 78 EAEGIRVIPTGLAHGTVTALCGGKPYEITTLRRDVESFGRHARVEFTDDWIEDAARRDLT 137 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +NA+ G + D GGL DL ++F+G+A RI ED LR+LRFFRF AHYG + D Sbjct: 138 MNAMSCTPDGDLFDPFGGLADLAAGRVRFVGEARRRIAEDVLRLLRFFRFHAHYGRGDPD 197 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV--HMYNGGIFKEIFLDVQEI 241 ++ L A L LS ER+ E+ +LL A P A V M GI + L + + Sbjct: 198 AEALAACRDLAPRLPTLSGERVRGELLRLLTA--PCAAAVWRLMMGQGIM--VHLLPEAM 253 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN- 300 D+L ++I E+ D + R + D+ A+ L R L++ Sbjct: 254 DTDRLERLITVERDLGETPDPIRRLATTLD-GDRPGAQKAAEALRLSNHERDRLLALVEP 312 Query: 301 ------CNFNQKTLSIPEIKKLFY------LYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 C +K+L ++ Y LYGD ++IA A H L Sbjct: 313 PVALAPCE-ERKSL-----RQALYRVGDAGLYGDLLLIAA-----ARHDGPLELMALRGA 361 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 L V D+ + P+ G D+++ +P G VG L + WI F+ +++ + Sbjct: 362 LAVAGDLPGLR---LPIAGRDLLELDLPRGPAVGAALKRVEAWWIAEDFRPTRDACLEMA 418 Query: 409 RKLIASSQ 416 R + + Sbjct: 419 RAVAGQAS 426 >gi|73667505|ref|YP_303521.1| polynucleotide adenylyl transferase [Ehrlichia canis str. Jake] gi|72394646|gb|AAZ68923.1| Polynucleotide adenylyl transferase [Ehrlichia canis str. Jake] Length = 396 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 143/402 (35%), Positives = 213/402 (52%), Gaps = 16/402 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + D+++I++ + K + + +VGG VRD+++ DID ATT+LP++++ + K I Sbjct: 8 NDDILSIINAIKKFQGEIRLVGGCVRDNMLKRQTTDIDFATTLLPNQIVESLTTANIKTI 67 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 PT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NALY D+ Sbjct: 68 PTGIKHGTITAIVNNTAYEITTLRSDINCDGRHAEVKFTNNWRQDASRRDFTFNALYCDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV-AS 190 QG V DY G+ DL + + FIGD RI EDYLRILR FRF+ KN SD ++ Sbjct: 128 QGIVYDYFSGIEDLEKKQLNFIGDPEIRIKEDYLRILRAFRFYTSICSKNTLSDQIIYCC 187 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K + LS ERI E KLL N N + M + ++I +I+ D +S I Sbjct: 188 TKYSSCINKLSKERIRDEFFKLLSYANLTNTLKIMQKCQVLEKII--PFDITPDIMSSDI 245 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + K+ +LLR +K S+ ++ L + L N N + LSI Sbjct: 246 LSNTDPLTKLAALLR-------TNKCSLDTIKVSLCLSNHDQKILALLLN-NNLELPLSI 297 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E +K G KV +KI A NL H D ++Q + + P FP++G D+ Sbjct: 298 IEQQKYINKLGKKVYCNLMKIRHAEL--NLNHHD---LVQYIEYADKFIIPEFPISGKDL 352 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 G GK +G L K W +SS+QL++ L + ++L+ Sbjct: 353 FNIGYQEGKNLGKTLKKIKDLWEDSSYQLTKSQLLNHAKELL 394 >gi|89067444|ref|ZP_01154957.1| polyA polymerase family protein [Oceanicola granulosus HTCC2516] gi|89047013|gb|EAR53067.1| polyA polymerase family protein [Oceanicola granulosus HTCC2516] Length = 383 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/407 (32%), Positives = 199/407 (48%), Gaps = 36/407 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 ++ +W + +LL ++ VGG VR++L+ V D+D+AT P+RV+ + Sbjct: 4 LEAEWLTRPASRVVCNLLTDAGYQAWFVGGCVRNALIGAPVSDLDLATNAHPERVLALAE 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT I++GT+ ++ +++TT R D+ TDGR A V F + D+ RRDFT+ Sbjct: 64 AAGLKAIPTGIAHGTVTLVVEGAPYEVTTFRRDVETDGRRAVVAFADSLEEDARRRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G + D +GGL DLR R ++FIGDA RI EDYLRILRFFRF A YG+ + Sbjct: 124 NALYAAPDGTIADPIGGLPDLRRRQVRFIGDAEARIREDYLRILRFFRFHAWYGDAGAGL 183 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D+DGL A + +G+ LS ERI E+ +LL A +P A+ M G ++ Sbjct: 184 DADGLAACAQHVEGVAGLSRERIGHEMLRLLAAPDPAPAVAAMEACGALAQVLPGA---G 240 Query: 243 LDQLSQVIEAEQ----VFEWKIDSLLRFIVLISWQDKKSILSMAK-KFSLPREIRYFLIS 297 QL+ +++ E+ W R + + QD + L ++K + R +R L S Sbjct: 241 AGQLAVLVDLEERAGLAPGWP-----RRLAALGGQDADTALRLSKDEAKRLRTLREALGS 295 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +L Y G V + L + A+ + +D H Sbjct: 296 EAGPG------------ELGYRLGAAVALDVLALRGAMEVRPVAPEDA-------DATRH 336 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 K FPLT D++ G +G L + WI S F L +E L Sbjct: 337 GAKQTFPLTAADLIDR--HQGPALGQALRDAEARWIASGFALGREAL 381 >gi|83313257|ref|YP_423521.1| tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum magneticum AMB-1] gi|82948098|dbj|BAE52962.1| tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum magneticum AMB-1] Length = 435 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/419 (28%), Positives = 212/419 (50%), Gaps = 18/419 (4%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W ++ +++ L + VGG VRD+L+ ++D+DIAT P+RV+ + Sbjct: 22 WMDAAETRAVVAALQAEGARVRFVGGCVRDALLKRPIKDVDIATPDPPERVLALLDDAGI 81 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 IPT I +GT+ + K +++ITTLR D+ + GR+A++ +T DW+AD+ RRDFT+NAL Sbjct: 82 HAIPTGIDHGTVTAVIGKAHYEITTLRVDVESFGRHARIEYTDDWRADASRRDFTMNALS 141 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGL 187 AD +G V D G+ D+ ++F+G+ RI ED LR+LRFFRF AHYG +++ L Sbjct: 142 ADPEGNVYDPFDGIADMAAGRVRFVGEPEKRIEEDALRLLRFFRFHAHYGRGIAMETRAL 201 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A + LK LS ER+ E+ +LL A +P +++ M++ GI I + +E + Sbjct: 202 NACRRMADRLKGLSGERVAGELVRLLLADDPTPSLLVMHSHGILAHILPEAKEFGRLRTL 261 Query: 248 QVIEAEQVF--EWKIDSLLRFIVLISWQDKKSILSMAKKFSL----PREIRYFLISFFNC 301 +E + E + DS+ R L++ D+ L + ++ L + + + Sbjct: 262 AWLERRGLARPEIRPDSMRRLAALLA-TDRAGALDLGERLKLSGVQAKRVAAMAAPRVHV 320 Query: 302 NFNQKTLSIPEIKKLFYLYG-----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 F + P ++ G D VM+A + + C+ +L Sbjct: 321 GF---AMDGPATRRALRKVGGDEFRDLVMVA-WAARRSTEARPDAAESRCWT-ALLDAAR 375 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 W+ P+ G D+++ G+P G ++G++L + W + ++ + LR L+A+ Sbjct: 376 DWQPVELPVKGRDLLELGVPHGPRIGSLLAAVEAWWEDLDYRPDRSQCLDRLRGLMAAG 434 >gi|157423165|gb|AAI53772.1| LOC398421 protein [Xenopus laevis] Length = 419 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 205/386 (53%), Gaps = 31/386 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L D+D ATT P+++ +F K ++I ++GT+ + F Sbjct: 46 IAGGAVRDLLSGKQPHDVDFATTATPEQMKDMFLKDGVRLINNKGETHGTVTARINDQNF 105 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR DL TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+NR Sbjct: 106 EITTLRVDLHTDGRHAEVEFTTDWEIDAERRDLTINSMFLGFDGTLYDYFNGYEDLKNRC 165 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAK-KGLKILSSERIWS 207 ++F+GD RI EDYLRILR+ RF+ E++ + G + +++ GL+ +S ERIW Sbjct: 166 VRFVGDPSQRIQEDYLRILRYLRFYGRISERSGAHTSGTLDAVRENASGLRGISGERIWV 225 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+LE + + I +Y+ G+ + L ++ +L++ ++V E + K +LL Sbjct: 226 ELKKILEGNHVNHLIQIIYDLGVAPHVGL-PEDGNLEEFARVCERSRRMSPKPMTLL--T 282 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 L S D L + K S +K L++ +++ L ++ A Sbjct: 283 ALFSNTDHVQKLDLRLKISK----------------EEKNLALFLLQQRRELTAERTDAA 326 Query: 328 KLKIFLALHYNNL---THQDTCFIL------QVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 LK F ++ TH+ C +L Q ++ W P FP++G D+ + GI G Sbjct: 327 PLKPFKDYVVDSREPDTHRKICELLKYQGEEQFFREMEGWTLPRFPVSGHDLRRMGISSG 386 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDL 404 K++G IL K+ W S FQ S+E+L Sbjct: 387 KEIGRILQELKEHWKGSGFQTSKEEL 412 >gi|259417404|ref|ZP_05741323.1| polynucleotide adenylyltransferase region [Silicibacter sp. TrichCH4B] gi|259346310|gb|EEW58124.1| polynucleotide adenylyltransferase region [Silicibacter sp. TrichCH4B] Length = 386 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/403 (32%), Positives = 200/403 (49%), Gaps = 30/403 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + + L + VGG VR++L+ V D+D++T + P+RV+ + Sbjct: 3 IDQPWLTSASTRAVCDALIAARAEIYFVGGCVRNALLQEPVSDLDLSTNVEPERVVEAAT 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT I +GT+ ++ F+ITT R D+ TDGR A V F D D+ RRDFT+ Sbjct: 63 IAGLKAIPTGIDHGTVTVVAGGIPFEITTFRKDVATDGRRAVVAFATDIAEDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G+V+D +GGL+DLR R ++FIGDA RI EDYLRILR+FRF + YG+ + Sbjct: 123 NALYARPNGEVVDPLGGLDDLRARRVRFIGDATQRIREDYLRILRYFRFHSWYGDAAEGF 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + L A + ++GL LS ER+ SE+ KLL A +P +I M G+ + + + Sbjct: 183 DPEALGAIAETQEGLDHLSRERVGSEMIKLLSAADPAPSIATMRQIGVLAHVLPGADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL-SMAKKFSLPREIRYFLISFFNC 301 L+ +I E K ++ L + QD + S A + L R++ + Sbjct: 243 ---LAPLIHLEAGMPIKAETRLAALGGDRIQDTLRLSKSTAARVRLLRQLAEGMAGG--- 296 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 +L Y + L + AL L+ Q+ DI Sbjct: 297 ------------AELAYRHDVDTARRALMLRSALLEMPLSP-------QLEPDIALGASA 337 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP++ D++ + G +G+ L + EWI S FQ+ ++DL Sbjct: 338 KFPISAQDLMPF--VQGAALGHALKTLEAEWIASGFQIDKQDL 378 >gi|163732986|ref|ZP_02140430.1| polyA polymerase family protein, putative [Roseobacter litoralis Och 149] gi|161393521|gb|EDQ17846.1| polyA polymerase family protein, putative [Roseobacter litoralis Och 149] Length = 392 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 133/403 (33%), Positives = 203/403 (50%), Gaps = 30/403 (7%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W HD+D + + L+ VGG VRD+L+ ++ D+D+AT P+ VMR+ + Sbjct: 15 WLHDADAQAVCAALSSEGGAVYFVGGCVRDALLGIAGSDVDLATDQTPENVMRLANAAGL 74 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + +PT + +GT+ I+ F++TT RSD TDGRYA V F+ D + D+ RRDFT+NALY Sbjct: 75 RAVPTGLDHGTVTIVSGGTGFEVTTFRSDTSTDGRYAVVCFSTDIREDARRRDFTMNALY 134 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDG 186 A G+++D + G+ D NR ++FI D RI EDYLRILRFFRF A Y + + D D Sbjct: 135 AAPAGQLVDPLHGMQDCLNRRVRFIEDPQKRIREDYLRILRFFRFHAWYADPDAGFDPDA 194 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245 L A + L LS+ERI +E+ KLL A +P ++ M G + S DQ Sbjct: 195 LDAIAQNTARLAQLSAERIGAEMMKLLRAPDPAPSVAVMRQTGCLGIVL----PGSDDQF 250 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-LSMAKKFSLPREIRYFLISFFNCNFN 304 L V+ E D +LR L + S+ LS A+ L ++++ F F Sbjct: 251 LGPVVHLEAAMGHGPDPVLRLSALGGDTAEDSLRLSRAEARKL-KQLQAF-------GFG 302 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +S+ EI Y + +A+ L + + L +I FP Sbjct: 303 --PMSLAEIA-----YRENADLARGAAILRAAFASQP-----VPASTLDEISKGADAKFP 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + D++ GK +G+ + +Q+WI S F L+++ L L Sbjct: 351 VKAADLMP--TYQGKALGDRVRLLEQQWIASGFSLTRDALLAL 391 >gi|110677804|ref|YP_680811.1| polyA polymerase family protein, putative [Roseobacter denitrificans OCh 114] gi|109453920|gb|ABG30125.1| polyA polymerase family protein, putative [Roseobacter denitrificans OCh 114] Length = 392 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/406 (31%), Positives = 204/406 (50%), Gaps = 36/406 (8%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W HD+D + + L+ VGG VRD+L+ ++ D+D+AT P+ VMR+ Sbjct: 15 WLHDADALAVCDALSCAGGAVYFVGGCVRDALLGIARSDVDLATDQTPENVMRLAEAAGL 74 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + +PT + +GT+ ++ F++TT R D TDGR+A V F+ D + D+ RRDFT+NALY Sbjct: 75 RAVPTGLDHGTVTVVSGGTGFEVTTFRRDTSTDGRHAVVSFSTDIREDARRRDFTMNALY 134 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDG 186 A G+++D + G+ D NR ++FI D RI EDYLRILRFFRF A Y + D D Sbjct: 135 AASDGRLVDPLNGVQDCLNRRVRFIEDPQKRIREDYLRILRFFRFHAWYADPAAGFDPDA 194 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245 L A + GL LS+ERI +E+ KLL A +P ++ M G + S D+ Sbjct: 195 LDAIAQNTAGLAQLSAERIGTEMMKLLRAPDPAPSVAAMRQTGCLARVL----PGSDDRF 250 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 L+ V+ E D +LR L + +L +++ + R+++ + F Sbjct: 251 LAPVVHLEGSMGHGPDPVLRLSAL-GGDMAEDVLRLSRAEA--RKLKQLQV------FGF 301 Query: 306 KTLSIPEIKKLFYLYGDKVMIAK----LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 +S+ EI Y + +A+ L+ A + QD +I + Sbjct: 302 GPMSLAEIT-----YRENADLARGAAILRAAFASQPVPASAQD---------EISKGAQA 347 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 FP+ D++ GK +G+ + +Q+WI S F L+++ L L Sbjct: 348 EFPIKASDLMP--TYQGKALGDRVRLLEQQWIASGFSLTRDALLAL 391 >gi|196005311|ref|XP_002112522.1| hypothetical protein TRIADDRAFT_25022 [Trichoplax adhaerens] gi|190584563|gb|EDV24632.1| hypothetical protein TRIADDRAFT_25022 [Trichoplax adhaerens] Length = 400 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/398 (31%), Positives = 213/398 (53%), Gaps = 19/398 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 +L ++ L + + +VGG VRD L++ +DID+AT PD+++ I K K + T Sbjct: 17 ELKRVIQLFQENNYQIRLVGGVVRDVLLDKVAKDIDLATDATPDQMIEILKKNEIKYVET 76 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 + +GTI +I K F+ITTLR D ITDGR+A+V FT DW+ D+ RRD TINA+ G Sbjct: 77 GLQHGTITVIINKAIFEITTLRIDAITDGRHAQVQFTNDWRIDAERRDLTINAMSLSIDG 136 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASI 191 + DY G DL NR I F+G+ RI EDYLRILR+FRF+ + D D L Sbjct: 137 TLFDYFNGREDLINRRIIFVGNTRKRIQEDYLRILRYFRFYGRIAANADSHDPDILQEIR 196 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 GL+ ++SERIW E++K+L + + MY+ G+ I L ++ ++++ + + Sbjct: 197 HTAAGLEKIASERIWMEMSKILVGNFAPDLLRLMYDLGVASHINLP-KDGNVEEFQAIWD 255 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + ++ + LL +V S ++A+ + L + FL+ F + Sbjct: 256 RMRNYKPQPAVLLASLV----NSVSSAEALARTWKLS-NVERFLMKFITGKRQNHYTILK 310 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + + L + DK +++ I ++YN + Q++ DI +W P FP+ G+D+ Sbjct: 311 QYQDLLF---DKETMSRDHIIQLMYYNGHS--------QLVDDINNWVIPKFPIGGNDLK 359 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G PG + L K+ W++++++ ++E+L L++ Sbjct: 360 SLGHKPGPQFKRTLDMLKKHWMDTNYKTTKEELLMLIQ 397 >gi|329890224|ref|ZP_08268567.1| tRNA-nucleotidyltransferase 1 [Brevundimonas diminuta ATCC 11568] gi|328845525|gb|EGF95089.1| tRNA-nucleotidyltransferase 1 [Brevundimonas diminuta ATCC 11568] Length = 364 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 114/363 (31%), Positives = 183/363 (50%), Gaps = 17/363 (4%) Query: 36 VRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR 95 +R++++ + D+DIAT + P+ V++ K +PT + +GT+ I ++ F+ITTLR Sbjct: 1 MRNAVLGAPIDDVDIATVLTPEAVVKALKAAGLKSVPTGMEHGTVTAISERQPFEITTLR 60 Query: 96 SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIG 154 D+ TDGR A V FT DW D+ RRDF +NALYAD G ++D G G D I F+G Sbjct: 61 RDVSTDGRRATVAFTDDWAEDAARRDFRLNALYADADGLILDPTGAGYEDALAGRIVFVG 120 Query: 155 DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 + RI EDYLRILRF+RFFA YG D + A +G++ LS+ER+ ++ KLL Sbjct: 121 EPEQRIREDYLRILRFYRFFAWYGRGAPDVAAVEACAALAEGVEQLSAERVSKDLLKLLA 180 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 A +P A+ M G+ + + ++L + I A D +LR L+ + Sbjct: 181 APDPRAAVRLMDQAGVLGRVAPQPESLTLFEAMVGISA--------DPVLRLSALLP-DE 231 Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 +++ + A K L R L+ + +S E + + G + + + Sbjct: 232 AEAVRAAALKLRLSNAQRDRLVEAVAERID-PAMSEAETRAAIWRAGRQAVEDR------ 284 Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 L+ + D + +L+ W P P+ G D+ + G+ PG + G +L +Q WI Sbjct: 285 LYRAWASGADAGVVQHLLALATAWTPPKLPVGGKDLARLGLSPGPETGRLLKAFEQSWIA 344 Query: 395 SSF 397 F Sbjct: 345 DDF 347 >gi|114799278|ref|YP_759076.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Hyphomonas neptunium ATCC 15444] gi|114739452|gb|ABI77577.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Hyphomonas neptunium ATCC 15444] Length = 381 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 124/380 (32%), Positives = 197/380 (51%), Gaps = 15/380 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VR++L L +D+DIAT +LP +VIPT I +GT+ + +I Sbjct: 15 VGGSVRNTLRGLKAEDVDIATQLLPQETAAALEAAGIRVIPTGIEHGTVTAFYKGVPIEI 74 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV-GGLNDLRNRTI 150 TTLR D+ TDGR A V FT+DW D+ RRDF +NA+YA +G++ + + G ++D + Sbjct: 75 TTLRRDVETDGRRAVVAFTQDWAEDAARRDFRMNAIYAGAEGELYEVIPGSIDDAIAGRV 134 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 FIG+ R++EDYLRILRF+RF A YG ID DG A + ++GL+ +++ERIW E+ Sbjct: 135 IFIGEGDQRLIEDYLRILRFYRFNAWYG-AGIDEDGQGACARQREGLRKIAAERIWKELK 193 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 + L A +P A+ M G+ EI L +L L + E D + R + L+ Sbjct: 194 RTLAAPDPAPAMAAMEEAGVL-EILLPGASAAL--LPGLAAVEAANGLAPDPMQRLMALL 250 Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKL 329 + ++ + A L + L ++ + L ++ Y + + ++ + Sbjct: 251 P-RRQRDVTDAANALRLSNQEAARLQAWADPALGHVLALGPAPRREACYRFTPQAVLDRA 309 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 I A + +L + HW +P+FP+ G D + G+ G +G L + Sbjct: 310 LIEAASGGEG-------SLTPLLQEKAHWMRPVFPIGGQDALAAGL-KGPDIGKRLYTLE 361 Query: 390 QEWINSSFQLSQEDLHHLLR 409 Q WI S F+LS+EDL L+ Sbjct: 362 QAWIASGFRLSREDLLSRLK 381 >gi|254449556|ref|ZP_05062993.1| tRNA-nucleotidyltransferase 1 [Octadecabacter antarcticus 238] gi|198263962|gb|EDY88232.1| tRNA-nucleotidyltransferase 1 [Octadecabacter antarcticus 238] Length = 384 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 131/377 (34%), Positives = 193/377 (51%), Gaps = 30/377 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR++L+++ V D+D+AT PD VM++ R KVI T I +GT+ ++ + F+I Sbjct: 30 VGGCVRNALVDMPVADLDLATNARPDVVMQLAKDARLKVIATGIDHGTVTVVADHRPFEI 89 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 TT R+D+ TDGR+A V F+ + D++RRDFT+NALY G VID VGG+ DL R ++ Sbjct: 90 TTFRNDVETDGRHAVVAFSNTLQEDAVRRDFTMNALYCAPDGTVIDPVGGIPDLHARHVR 149 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 FI DA RI EDYLRILRFFRF+A +G ++ ID+DG A GL+ L+ ER+ +E+ Sbjct: 150 FINDADLRIREDYLRILRFFRFYAWFGDPDQGIDADGFAACAANLDGLEGLAKERVRTEL 209 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 K L A NP A+ M G + + L+ +I ++ + L + Sbjct: 210 LKTLLAPNPAPAMASMAMCGALGRLLAGAD---VSALAPLIHLQEKL-GRPAHLHTRLAA 265 Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 I+ D S L ++K +L F LS+ + L Y G ++ I L Sbjct: 266 INPGDVTSQLRLSKADTL---------EF--TRIRDGALSVIDAAPLGYNLGSELAIEAL 314 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL-FPLTGDDVVK-YGIPPGKKVGNILVH 387 + AL T D D + +P+T D++ Y G +G L Sbjct: 315 MLRAALSGGTFTKIDM--------DAAQFGGAQNYPVTAKDLMPTYA---GPALGARLKQ 363 Query: 388 CKQEWINSSFQLSQEDL 404 + WI S F L + DL Sbjct: 364 LETAWIASGFTLVKSDL 380 >gi|170742595|ref|YP_001771250.1| polynucleotide adenylyltransferase region [Methylobacterium sp. 4-46] gi|168196869|gb|ACA18816.1| Polynucleotide adenylyltransferase region [Methylobacterium sp. 4-46] Length = 418 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 101/226 (44%), Positives = 145/226 (64%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L L +++ +VGGAVRD+L+ +V D+D+ATT+LP+ VMR + + K +PT IS Sbjct: 20 KVLDALALPGEETRLVGGAVRDALLGRAVADVDLATTLLPETVMRRAAASGLKPVPTGIS 79 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 +GT+ ++ + F++TTLR D+ TDGR+A V + RD+ D+ RRDFTINAL+AD G + Sbjct: 80 HGTVTVVAHGEPFEVTTLREDVETDGRHAVVRYGRDFGRDAARRDFTINALFADAGGHLH 139 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D VGGL DL ++FIGD RI EDYLRILRFFRF A YG +D GL A+I A+ G Sbjct: 140 DPVGGLPDLAAGRVRFIGDPAQRIREDYLRILRFFRFHARYGRGPLDPAGLAAAIAARDG 199 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 L LS ER+ E+ KL+ A + M G+ + + + ++ Sbjct: 200 LATLSRERVRVEMLKLVAAPGAPEVVAVMSATGLLQRLLGGIGDLG 245 >gi|258542072|ref|YP_003187505.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01] gi|256633150|dbj|BAH99125.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01] gi|256636207|dbj|BAI02176.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-03] gi|256639262|dbj|BAI05224.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-07] gi|256642316|dbj|BAI08271.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-22] gi|256645371|dbj|BAI11319.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-26] gi|256648426|dbj|BAI14367.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-32] gi|256651479|dbj|BAI17413.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654470|dbj|BAI20397.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-12] Length = 397 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 185/362 (51%), Gaps = 17/362 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD ++ S+ DID+A P+ VM+ V+PT +++GT+ + ++ Sbjct: 29 LVGGAVRDLMVGRSIADIDLAVPQPPEEVMQRLKAQGMTVVPTGLAHGTVTAVIDSAPYE 88 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D+ TDGR+A V +T +W+ D+ RRDFTINA+ D G V DY G +DL N ++ Sbjct: 89 ITTLRRDVETDGRHAVVCWTDNWQEDAARRDFTINAMSCDSTGTVHDYFDGQHDLANGSV 148 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 +F+GDA RI ED LRILRFFRF+ YG D+ + A + L LS ERIWSE+ Sbjct: 149 RFVGDATLRIQEDALRILRFFRFWGRYGRGQADAQAMHAITTQAELLNGLSVERIWSELK 208 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 ++L L+ + M GI + L + + V Q+ + + + Sbjct: 209 RILAGPKALDVVYMMQQAGILP--------VLLPEGAHVPVFAQLMAFNSPADALLRLAA 260 Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330 DK + MA++ R L + + +S +++ L ++ A+ Sbjct: 261 LVPDKSA--DMARRLKFSRAEAARLKAMQDEPVPLPDMSDAQLRHLLADTSPDILAARSW 318 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 ++ A H + L + + Q L+ + + P+FPL G D++ G PG VG +L + Sbjct: 319 LYQARHADVLGTE----LRQRLARL---EIPVFPLAGRDLLDAGCQPGPHVGQVLKDVRN 371 Query: 391 EW 392 W Sbjct: 372 WW 373 >gi|149912910|ref|ZP_01901444.1| polyA polymerase family protein [Roseobacter sp. AzwK-3b] gi|149813316|gb|EDM73142.1| polyA polymerase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 198/380 (52%), Gaps = 28/380 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VR+SL+N V DIDIAT P+ V+R+ K +PT + +GT+ ++ Sbjct: 8 QALFVGGCVRNSLLNKPVSDIDIATDAHPETVIRLAEAAGLKPVPTGLDHGTVTVVSDHV 67 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++TT R D+ T GR+A V ++ D D+ RRDFT+NALYA G ++D +GGL+DL+ Sbjct: 68 PHEVTTFREDVETYGRHAVVAYSDDVMQDARRRDFTMNALYARPDGMLVDPLGGLSDLKA 127 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKILSSERI 205 R ++FI D + RI EDYLRILRFFRF A YG+ + +D+DGL A + GL LS ER Sbjct: 128 RRVRFIDDPNQRIREDYLRILRFFRFHAWYGDPDMGLDADGLAAVSEHVDGLAGLSRERT 187 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 SEI KLL A +P ++ M G+ + + + L+ ++ EQ+ + + + R Sbjct: 188 GSEIVKLLTAPDPAPSVAAMRACGVLAAVLPGSDDRA---LAPLVHLEQIAGLEPEPMRR 244 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L +++ + S + R L+ +L Y YG + Sbjct: 245 LSSL-----GGDMVASRLRLSKAQSKRLDLLLAEAALAKPPM-------ELGYRYG---I 289 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNI 384 L I + H + D+ + Q++ H K FP+T D++ +Y G +G Sbjct: 290 DPGLDIVVLRHALLESPFDSA-VRQIMEQASHAK---FPVTPHDLMSEYS---GPALGRR 342 Query: 385 LVHCKQEWINSSFQLSQEDL 404 L +Q WI S F L +EDL Sbjct: 343 LSELEQRWIESGFSLGREDL 362 >gi|147900819|ref|NP_001089848.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus laevis] gi|80477591|gb|AAI08538.1| MGC130991 protein [Xenopus laevis] Length = 419 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 199/384 (51%), Gaps = 27/384 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L D+D ATT PD++ +F K ++I +GT+ ++ F Sbjct: 46 IAGGAVRDLLSGKQPHDVDFATTATPDQMKDMFIKEGVRMINNKGEKHGTVTARINEQNF 105 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR DL TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+ R Sbjct: 106 EITTLRVDLHTDGRHAEVEFTTDWETDAERRDLTINSMFLGFDGTLYDYFNGYEDLKKRC 165 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAK-KGLKILSSERIWS 207 ++F+GD RI EDYLRILR+ RF+ E+ + + G + +I+ GL+ +S ERIW Sbjct: 166 VRFVGDPSQRIQEDYLRILRYLRFYGRISERTSAHTSGTLDAIRENASGLRGISGERIWV 225 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+LE + + I +Y G+ + L ++ +L++ ++V E K +LL Sbjct: 226 ELKKILEGNHVNHLIQIIYELGVAPHVGL-PEDGNLEEFARVCEHSHRMSPKPMTLL--T 282 Query: 268 VLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 L+S D L + K S + + FL+ + K+L D+ + Sbjct: 283 ALLSNMDHVQKLDLRLKISKEEKNLALFLLQ--------------QRKELTAERTDEAPL 328 Query: 327 AKLKIFLALHYNNLTHQDTCFIL------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKK 380 K ++ H+ C +L Q ++ W P FP++G D+ + GI GK Sbjct: 329 KPFKDYVVDSREPDAHRKICELLKYQGEEQFFREMEAWTLPRFPVSGHDLRRMGISSGKD 388 Query: 381 VGNILVHCKQEWINSSFQLSQEDL 404 +G IL ++ W S +Q S+E+L Sbjct: 389 IGRILQELREHWKESGYQASKEEL 412 >gi|254460336|ref|ZP_05073752.1| tRNA-nucleotidyltransferase 1 [Rhodobacterales bacterium HTCC2083] gi|206676925|gb|EDZ41412.1| tRNA-nucleotidyltransferase 1 [Rhodobacteraceae bacterium HTCC2083] Length = 381 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 138/406 (33%), Positives = 196/406 (48%), Gaps = 35/406 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 VQ W D+ + L ++ VGG VR++L+ + V DIDIAT P+ V+ Sbjct: 3 VQGAWIEDAATQVVCDALTSQGFQTLFVGGCVRNALLGVDVSDIDIATDATPEDVVECAR 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT I +GTI ++ ++TT RSD TDGR+AKV F++ D+ RRDFT+ Sbjct: 63 LAGLKSIPTGIDHGTITVVSAGIPHELTTFRSDTETDGRHAKVRFSKSILEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NI 182 NA+YAD G V+D + G+ DL R ++FIGDA RI EDYLR LRFFRF A YG+ I Sbjct: 123 NAIYADPAGFVVDPLNGMPDLNARHVRFIGDAEARIREDYLRSLRFFRFTAWYGDPGLGI 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D DGL A GL+ LS ER+ SE+ KL+ A NP A+ M + G+ + + + Sbjct: 183 DPDGLAAVAANLDGLEGLSRERVGSELKKLMTAANPAMAVAAMRSSGVLHAVLPSADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFNC 301 L L I EQ D + R L + AKK L + E + + + Sbjct: 243 LGPL---IHLEQRLNIAPDPIRRLSALTTSD-------AAKKLRLSKLESKRWAV----- 287 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + L YL+G L FL + N + + + Sbjct: 288 -LRDEVETTKPAAHLGYLHGSNTAKDVLLLRSAFLEMPINE----------EAIQESNKG 336 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + LFP+ D+ G +G L +Q WI S F LS+++L Sbjct: 337 ETALFPIKAKDLPHLS---GCALGEALTTLEQRWIASGFTLSRDEL 379 >gi|159046029|ref|YP_001534823.1| CCA-adding enzyme [Dinoroseobacter shibae DFL 12] gi|157913789|gb|ABV95222.1| CCA-adding enzyme [Dinoroseobacter shibae DFL 12] Length = 382 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 133/408 (32%), Positives = 193/408 (47%), Gaps = 35/408 (8%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +S++ + H ++L +L + VGG VR++L+ V D DIAT LP +V Sbjct: 1 MSVLASRLSHPG-AQHVLGVLTGAGHAAYFVGGTVRNALIGAPVTDFDIATAALPQQVQT 59 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + KV+ T I +GT+ ++ K F++TT R D+ TDGR A V F +D D+ RRD Sbjct: 60 LAEDAGIKVVATGIDHGTLTLVLDKTPFEVTTFRRDVATDGRRATVAFAKDVAEDARRRD 119 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-- 179 FT+NALYA G+V+D +GGL DL R ++FI D RI EDYLRILRFFRF A YG+ Sbjct: 120 FTMNALYATAAGEVVDPLGGLPDLEARKVRFIDDPEARIREDYLRILRFFRFTAWYGDPA 179 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 K ID++GL A GL+ LS+ER+ +E+ KLL A +P A+ M GI + Sbjct: 180 KGIDAEGLTACAALADGLQTLSTERVTAELLKLLAAPDPAPAVASMGQSGILSRVLPGAA 239 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + + L+ ++ E + D L R L L ++K + R+ Sbjct: 240 DTA---LAPLVHLEPTLDLAPDGLRRLAAL---GGDAGGLRLSKV-----QARHLATLRS 288 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 N L + G ++ LAL +L SDI Sbjct: 289 ESGGNDTALHL----------GQRLGPETAAEVLALRAASLGQP---IPPNARSDIARGA 335 Query: 360 KPLFPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+ D +P G +G L + W S F+L +E L Sbjct: 336 AATFPVRAAD-----LPADLEGPAIGAALGILEAAWRASDFRLDREAL 378 >gi|254439635|ref|ZP_05053129.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Octadecabacter antarcticus 307] gi|198255081|gb|EDY79395.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Octadecabacter antarcticus 307] Length = 384 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 134/381 (35%), Positives = 197/381 (51%), Gaps = 38/381 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR++L+++ V D+D+AT PD VM++ + KV+PT I +GT+ ++ + ++I Sbjct: 30 VGGCVRNALVDMHVADLDLATNARPDVVMKLATDAGLKVVPTGIDHGTVTVVADHRPYEI 89 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 TT R D+ TDGR A V F+ + D++RRDFT+NALY G VID VGG++DL R ++ Sbjct: 90 TTFRKDVETDGRRAVVAFSDGLEDDAVRRDFTMNALYCAPDGTVIDPVGGISDLHARHVR 149 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 FI DA RI EDYLRILRFFRF+A +G E+ +D+DGL A GL+ L+ ER+ +EI Sbjct: 150 FINDADMRIREDYLRILRFFRFYAWFGDPEQGLDADGLAACAGNLDGLEGLAKERVQTEI 209 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 K L A NP A+ M G+ + +L L + EQ+ + L + Sbjct: 210 LKTLLAPNPAPAMASMAICGVLLRLLPGADVSALAPLVHL--QEQL--GRPAHLHTRLAA 265 Query: 270 ISWQDKKSILSMAK----KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 I+ D + L ++K KFS R+ I + L Y G + Sbjct: 266 INPGDVTAQLRLSKADTTKFSRIRDGASSGI---------------KAAPLGYALGADLA 310 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-LFPLTGDDVVK-YGIPPGKKVGN 383 I L + +AL LT D D + +P+ D++ Y G +G Sbjct: 311 IEALMLRVALSGGILTKIDI--------DAAQFGGAQTYPVKAKDLMSAYA---GAALGA 359 Query: 384 ILVHCKQEWINSSFQLSQEDL 404 L + EWI S F L++ DL Sbjct: 360 RLKQLESEWIASGFTLTKPDL 380 >gi|68171795|ref|ZP_00545137.1| Polynucleotide adenylyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|88657671|ref|YP_507900.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Ehrlichia chaffeensis str. Arkansas] gi|67998786|gb|EAM85496.1| Polynucleotide adenylyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|88599128|gb|ABD44597.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Ehrlichia chaffeensis str. Arkansas] Length = 401 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 138/409 (33%), Positives = 203/409 (49%), Gaps = 38/409 (9%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 + ++ +++ I++ + K + +VGG VRDSL+ DID ATT+LP++ + + Sbjct: 5 FINNENILLIINAIKKFQGDIRLVGGCVRDSLLKRQTIDIDFATTLLPNQTINALTAAHI 64 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K IPT I +GTI + ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NALY Sbjct: 65 KAIPTGIKHGTITALVNNTAYEITTLRSDISCDGRHAEVKFTNNWQQDASRRDFTFNALY 124 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D++G V DY G+ DL + + FIGD RI EDYLRILR FRF+A +N SD +V Sbjct: 125 CDEKGIVYDYFSGIQDLEKKHLNFIGDPEIRIQEDYLRILRAFRFYASICSQNKLSDEIV 184 Query: 189 ASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 S K + LS ERI E KLL N N + M + +I I + + Sbjct: 185 HSCTKYSSYINNLSRERIRDEFFKLLLCPNLSNTLKIMQKCHVLDKI------IPFEVIP 238 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 ++ +E + D L + L+ + L K S N++QKT Sbjct: 239 DIMSSETL--SNTDPLTKLAALLRTNNNNHSLDKIKA------------SLCLSNYSQKT 284 Query: 308 ------------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 LS K G ++ L+I A NL + D ++Q + Sbjct: 285 LVSLLNNNLELPLSTTAQHKHINKLGKEIYCNLLRIIHAEL--NLNYHD---LMQYIEYA 339 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P FP++G D++ G PGK +G L K W NSS+QL++ L Sbjct: 340 DQLIIPEFPISGKDLLNIGYQPGKNLGITLEKIKDLWENSSYQLTKTQL 388 >gi|315498160|ref|YP_004086964.1| polynucleotide adenylyltransferase region [Asticcacaulis excentricus CB 48] gi|315416172|gb|ADU12813.1| Polynucleotide adenylyltransferase region [Asticcacaulis excentricus CB 48] Length = 409 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 188/377 (49%), Gaps = 26/377 (6%) Query: 30 CI--VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 C+ VGG VRD +M + D+D++T + PD S + +PT ++GTI + + Sbjct: 29 CVRFVGGCVRDVVMGRTPGDLDLSTQLTPDATEAALSAASIRHVPTGKAFGTITAVIDGQ 88 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLR 146 F+IT+LR D+ TDGR A V +T DW D+ RRD +NALYAD +G+V D G G +D R Sbjct: 89 PFEITSLREDVETDGRRAVVSYTTDWSRDAQRRDLYLNALYADIRGEVFDPTGQGFDDAR 148 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 ++ IGDA RI EDYLRILRFFRF A +G +D+ L A + + G+ LS ERI Sbjct: 149 AARVRLIGDAETRIREDYLRILRFFRFSASHG-TGLDAASLSACVALRAGIDSLSGERIQ 207 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV---FEWKIDSL 263 E+ KLL +P+N + M G+ + + AE+V F D + Sbjct: 208 QELFKLLGIADPVNVVRRMTETGVMAHVVPGAS----------VNAERVEAGFPLTSDPI 257 Query: 264 LRFIVLI---SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 R I+L+ W + + L + + S R + C T S+ +++ Y Y Sbjct: 258 QRLIILVGGQGWGETLTALILRLRLS-SRMADRLSAAAVACAEVDITASLAALRRGLYRY 316 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKK 380 G + L + A L+ + + Q L I + P+FPL ++ G+ PG + Sbjct: 317 GRHAISDGLVLRGA--EAGLSPEAWKALDQNLKKI---EVPVFPLKSARLISIGLAPGPE 371 Query: 381 VGNILVHCKQEWINSSF 397 +G L + EWI F Sbjct: 372 LGQTLRRIEAEWIAHDF 388 >gi|83953100|ref|ZP_00961822.1| polyA polymerase family protein [Sulfitobacter sp. NAS-14.1] gi|83842068|gb|EAP81236.1| polyA polymerase family protein [Sulfitobacter sp. NAS-14.1] Length = 388 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 134/408 (32%), Positives = 205/408 (50%), Gaps = 30/408 (7%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +W D D + + G VGG VR++L+ ++ D+D++T LP+RVM Sbjct: 1 MTLPASTRWLSDPDAQAVCDAVTDGGHAIYFVGGCVRNALLGVADSDVDMSTNALPERVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + ++ K +PT + +GT+ ++ K F++TT R D+ TDGR A V F+ D+LRR Sbjct: 61 ALAARAGLKAVPTGVEHGTVTVVSGGKGFEVTTFRRDVETDGRRAVVAFSDSILDDALRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE- 179 DFT+NALYAD QG+VID + GL DLR R ++FI DA RI EDYLR LR+FRF A Y + Sbjct: 121 DFTMNALYADAQGRVIDPLEGLVDLRARRVRFIEDAAQRIREDYLRTLRYFRFCAWYADP 180 Query: 180 -KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + D + L A GL+ LS+ERI +E+ KLL A +P A+ M G+ I Sbjct: 181 VEGFDPEALAAIAAHIDGLERLSAERIGAELTKLLTAPDPAPAVAAMRQTGVLGAILPG- 239 Query: 239 QEISLDQ-LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 S D+ L V+ EQ+ + +D R L +D L ++K + +L Sbjct: 240 ---SDDRWLGMVVHFEQLLQMSVDWRRRLAAL-GGEDIDQRLRLSKADA------KYLHR 289 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + +T++ + D +A+ + L + T D VL I Sbjct: 290 LKEAAYGAETVAA-------IAHTDGGDMARAVVVLRACLSE-TPPDAA----VLDRIAQ 337 Query: 358 WKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + +FP+ D++ +Y G +G L K WI S F +++ L Sbjct: 338 AEAAVFPVQAADLMPEY---TGPALGRRLAELKALWIASGFAATRDSL 382 >gi|99082731|ref|YP_614885.1| polynucleotide adenylyltransferase region [Ruegeria sp. TM1040] gi|99039011|gb|ABF65623.1| Polynucleotide adenylyltransferase region [Ruegeria sp. TM1040] Length = 386 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 130/406 (32%), Positives = 193/406 (47%), Gaps = 36/406 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W H + L + VGG VR++L+ V D+D++T+ P V Sbjct: 3 IDEPWLHSPATRKLCDALTSAGAEIYFVGGCVRNALLGEPVSDLDLSTSATPQYVTEAAE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + KVIPT I +GT+ ++ F+ITT R D+ TDGR A V F + D+ RRDFT+ Sbjct: 63 QAGLKVIPTGIEHGTVTVVVDGDPFEITTFRRDVATDGRRAVVAFATEILEDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G+++D + G DLR R ++FIGDA RI EDYLRILR+FRF + YG E Sbjct: 123 NALYARPTGEIVDPLSGFEDLRARRVRFIGDATRRIQEDYLRILRYFRFHSWYGDAEAGF 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + L A ++GL LS ER+ +EI KLL + NP ++ M G+ + + + Sbjct: 183 DPEALAAIAATQEGLDHLSRERVGAEIMKLLSSSNPAPSVATMRQIGVLAHVLPGADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L +EA+ E + + + +D ++ L ++K + R L+ Sbjct: 243 LAPLIH-LEADLPAEAETR-----LAALGGEDLQNTLRLSKASA----ARVTLLRTLATG 292 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL----SDIIHW 358 EI Y V AK + L + F + VL SDI Sbjct: 293 TATAA----EIA-----YRQGVDTAKRAMML---------RSALFEMPVLPDLESDIALG 334 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP++ D++ + G +G L + EWI S FQ +E L Sbjct: 335 AVAEFPISAKDLMPH--VQGAALGRALRTLEAEWIRSGFQSDRETL 378 >gi|126336363|ref|XP_001374161.1| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1 [Monodelphis domestica] Length = 436 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 132/400 (33%), Positives = 211/400 (52%), Gaps = 15/400 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L N+ L +K + + I GGAVRD L QD+D ATT P ++ +F ++I Sbjct: 47 LKNLAELFSKEKYELRIAGGAVRDLLNGTKPQDVDFATTATPAQMKEMFQAAGIRLINNK 106 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F+ITTLR D+ITDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 107 GEKHGTITARLHEENFEITTLRIDVITDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 166 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASI 191 + D+ G DL+N+ ++F+GD RI EDYLRILR+FRF+ ++ DS L A Sbjct: 167 TLFDFFNGYEDLKNKKVRFVGDPKERIQEDYLRILRYFRFYGRIADRPGTHDSKTLEAIK 226 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQVI 250 + KGL +S ERIW E+ K+L N N +VH MY+ + + L SL++ + V Sbjct: 227 ENAKGLAGISGERIWVELKKIL-VGNHANHLVHLMYDLDVAHYLGLPAAG-SLEEFNTVS 284 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + K +LL L QD L + + + +E + + F + + Sbjct: 285 KNVETLSPKPMTLL--ASLFKVQDDVKNLDL--RLKIAKEEKN--LGLFIVKHRKDLIKA 338 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + Y D V+ ++ L L +Q + +L ++ W P FP++G DV Sbjct: 339 ADSSEPLKPYQDFVLDSREPDTLGRICELLKYQGE---VDLLKEMQQWSIPPFPVSGHDV 395 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K GI GK++G IL +++W S +++ +E+L ++K Sbjct: 396 RKVGISSGKEIGLILQQLREQWKKSGYKMDKEELLSFVKK 435 >gi|157803201|ref|YP_001491750.1| poly(A) polymerase [Rickettsia canadensis str. McKiel] gi|157784464|gb|ABV72965.1| poly(A) polymerase [Rickettsia canadensis str. McKiel] Length = 403 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 145/403 (35%), Positives = 219/403 (54%), Gaps = 41/403 (10%) Query: 18 ILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ILSLLN KG+ + ++GG VRD+L+ DIDI TT++P V+ I S+ + K IPT + Sbjct: 18 ILSLLNEKGQAR--LIGGCVRDALLKKDSYDIDIDTTLIPSEVINILSRAKIKTIPTGLK 75 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKV 135 +GTI I K+ F+ITTLR D+ +GR+AK+VFT D+ D+ RRDFTINAL Y + K+ Sbjct: 76 FGTITAILDKEKFEITTLRKDIECNGRHAKLVFTNDFAEDAARRDFTINALSYCPFKNKI 135 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 DY G DL+ + FIG+A +RI EDYLRILRFFRF ++Y + +D +GL A K Sbjct: 136 YDYFDGFKDLQQEKVVFIGEALNRIKEDYLRILRFFRFSSYYANQ-LDHEGLKACKVLKY 194 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 GLK LS ERI SE+NK++ +K + M+ GI + IF +Q + EQ Sbjct: 195 GLKTLSRERIKSEMNKIIVSKRAAQILEAMFEIGILELIF-SIQNYKIKFF------EQA 247 Query: 256 FEWKIDSLLRFIVLISWQDKKSI-LSMAKKFSLPREIRYFLISFF----NCNFNQKTLSI 310 ++K++ R+ +L+ Q ++ + + KFS ++ I+ F CN + L Sbjct: 248 NDFKLELATRYALLLYNQKDLNLKVFLDWKFSKYEAMQILSITNFLNDTECNMKKIWLEK 307 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK---KPLFPLTG 367 K+ YL + I KL LQV I + +P F + G Sbjct: 308 NNYKE--YLLAASI-IGKLD-----------------YLQVKEFIRKYDAVLRPKFQVNG 347 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++++ I K++G L + K WI F+ S+ +L ++ + Sbjct: 348 NNLLNMNIEK-KEIGAKLEYLKNFWIEHDFKPSKLELLRVISR 389 >gi|126724604|ref|ZP_01740447.1| polyA polymerase family protein [Rhodobacterales bacterium HTCC2150] gi|126705768|gb|EBA04858.1| polyA polymerase family protein [Rhodobacterales bacterium HTCC2150] Length = 394 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 139/410 (33%), Positives = 209/410 (50%), Gaps = 37/410 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 VQ W D I SLL ++ VGG VR++L++ V D+DIAT P++V+ + Sbjct: 8 VQGDWLSDPAAQKIFSLLLDAGYQAYAVGGCVRNALLDCPVNDVDIATNARPEQVVALAK 67 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT I +GT+ ++ F++TT R D+ TDGR A V F + D+ RRDFT+ Sbjct: 68 AAGVKSIPTGIDHGTVTLLKNSTPFEVTTYRRDVETDGRRAVVAFADTIEEDARRRDFTM 127 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NI 182 NALYA G ++D +GGL D +R + FI +A R+ EDYLRILRFFRF A YG+ + Sbjct: 128 NALYASADGTLVDPLGGLQDCMDRRVVFIENAEARVREDYLRILRFFRFHAWYGDPAAGL 187 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D DGL A + +GL LS ER+ SEI KLL A +P A+ M GI + S Sbjct: 188 DPDGLAACAELAQGLDGLSRERVTSEILKLLAAPDPAPAVAVMDQAGILTRVLPGATAKS 247 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-REIRYFLISFFNC 301 L+ ++ E E S +R + + D S +++K +E R L + + Sbjct: 248 ---LAPLVHLEDGLE---PSAIRRLATLGG-DAISTFRLSRKEERAIKERRDALENMTSL 300 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 N S+ ++K F + D V + + IF +T +++I + + Sbjct: 301 N------SVAQLKG-FDVARD-VALMRAAIF-----------ETPMGENWINEIENAARQ 341 Query: 362 LFPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 FP++ + +P G +G L K+ W++S F LS++DL LL Sbjct: 342 TFPVSAAN-----LPSELQGAAIGKALAQLKKAWVDSGFNLSKQDLLRLL 386 >gi|224066641|ref|XP_002186976.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1 [Taeniopygia guttata] Length = 517 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/413 (31%), Positives = 211/413 (51%), Gaps = 22/413 (5%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q + L ++ L K + I GGAVRD L ++ QDID ATT P + +F+ Sbjct: 120 QFQALFTPGLRSVAELFEKKNYELRIAGGAVRDLLSGVTPQDIDFATTATPAEMKEMFTA 179 Query: 66 TRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 ++I +GTI ++ F+ITTLR D++TDGR+A+V FT DW D+ RRD T+ Sbjct: 180 AGVRLINNKGEKHGTITARLHEQNFEITTLRIDVVTDGRHAEVEFTTDWHKDAERRDLTV 239 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID- 183 N+++ G + D+ G DL N+ I+F+G A RI EDYLRILR+FRF+ EK D Sbjct: 240 NSMFLGLDGTLYDFFNGYEDLINKKIRFVGKAAERIQEDYLRILRYFRFYGRIAEKPGDH 299 Query: 184 -SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + L A + KGL +S ERIW E+ K+L + + I MY I + I L + + + Sbjct: 300 EPNTLQAIKENAKGLAGISGERIWVELKKILLGNHVNHLIQLMYELDIAQYIGLPL-DGN 358 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L++ ++V + Q K ++L + ++ K + ++ + + +E + + F Sbjct: 359 LEEFARVSKNIQNLSPKPMTVLTSL----FKGKDDVTNLDLRLKISKEEKN--LGLFLIK 412 Query: 303 FNQKTLSIPEIKKLF----YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Q+ P + L +L + KIF L Y Q+L ++ W Sbjct: 413 HRQELTKGPGPEPLRPYQDFLMDSREANTNSKIFELLKYQGEE--------QLLKEMQEW 464 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P FP++G D+ K G+ GK++G L + EW S + + +E+L L+KL Sbjct: 465 TVPSFPVSGHDLRKMGMSSGKEIGTALQQLRDEWKKSGYHMDKEELLSCLKKL 517 >gi|254796995|ref|YP_003081832.1| poly A polymerase family protein [Neorickettsia risticii str. Illinois] gi|254590230|gb|ACT69592.1| poly A polymerase family protein [Neorickettsia risticii str. Illinois] Length = 392 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/401 (32%), Positives = 211/401 (52%), Gaps = 22/401 (5%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V+ W DL ++ ++ ++ VGG VRD L+ + DID+ATT+ P++ +R Sbjct: 3 VETSW--TEDLRTLVQIIRNNGGEARFVGGCVRDQLLGRKISDIDLATTLKPEKAIRALK 60 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 IPT + +GT ++ + +ITTLR DL DGR+A V FT WK D+ RRDFT Sbjct: 61 INGLVTIPTGLKHGTFTVLVNSRAIEITTLRQDLQCDGRHATVSFTDSWKKDAQRRDFTF 120 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NA+Y D +G + DY GL DL+NR +KF+G+ H RI EDYLRILR FRF A + + Sbjct: 121 NAMYMDIEGNIYDYFSGLEDLQNRRLKFVGEPHQRIEEDYLRILRAFRFQASICKTPLSE 180 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + L A K +K + LS ERI E+ KLL N L+ + M I E+ ++S Sbjct: 181 EILHACTKYRKKISSLSGERIQGEMFKLLSYVNFLSTVFTMQEAKIIDEVL--GAKVSFS 238 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 L E ++ + I +L +++ + + ++ + ++ + +++ + IS Sbjct: 239 GLD--YEKSRLIQDHIAALT--LLIRNTESSYNLQWLYSRWRISKKV-HQAISIL---LE 290 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSDIIHWKKPLF 363 +K + P KK G+++ +KI A N LT+ Q F+L + + ++P+F Sbjct: 291 EKEMHCP--KKTLAKLGNELTRKLIKILYA--ENKLTNTQHKNFMLVINNS----ERPIF 342 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P+ G D++ G G ++G L + W SS LS+ +L Sbjct: 343 PVMGRDLIPLGY-TGPEIGKKLKQLEYLWRESSCALSKNEL 382 >gi|109035906|ref|XP_001100764.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial isoform 2 [Macaca mulatta] Length = 439 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/395 (32%), Positives = 206/395 (52%), Gaps = 17/395 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L N+ L K + I GGAVRD L + QD+D ATT P ++ +F ++I Sbjct: 45 LKNLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNK 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 105 GEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 164 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASI 191 + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K D D L A Sbjct: 165 TLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDAETLEAIA 224 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVI 250 + KGL +S ERIW E+ K+L N +N ++H+ Y+ + I L SL++ +V Sbjct: 225 ENAKGLAGISGERIWVELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVS 282 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLS 309 + + F K +LL L QD + L + K + + + F++ S Sbjct: 283 KNVEGFSPKPMTLL--ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSS 340 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P ++ + A ++ L Y + C +L ++ W P FP++G D Sbjct: 341 DPLKPYQDFIIDSREPDATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHD 392 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + K GI GK++G +L +++W S +Q+ +++L Sbjct: 393 IRKVGISSGKEIGALLQQLREQWKKSGYQMEKDEL 427 >gi|58617624|ref|YP_196823.1| Poly(A) polymerase [Ehrlichia ruminantium str. Gardel] gi|58417236|emb|CAI28349.1| Poly(A) polymerase [Ehrlichia ruminantium str. Gardel] Length = 397 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 142/424 (33%), Positives = 220/424 (51%), Gaps = 48/424 (11%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 + + +++D++ I + + K + +VGG VRD+++ DID ATT+LP +++ + Sbjct: 3 NNFANNNDILLITNAIKKHQGDIRLVGGCVRDNILKRQTVDIDFATTLLPYQIIEALNIA 62 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 K IPT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NA Sbjct: 63 HIKSIPTGIKHGTITAIVNNTAYEITTLRSDIYCDGRHAEVKFTNNWQQDASRRDFTFNA 122 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 LY D++G V DY G+ DL+N+ + FIGD RI EDYLRILR FRF A +N SD Sbjct: 123 LYCDEKGIVYDYFSGIQDLKNKQLNFIGDPETRIQEDYLRILRAFRFHAAICSQNKLSDI 182 Query: 187 LVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++ S K + LS ERI E KLL N +N + M + ++I I + Sbjct: 183 IIQSCTKYASCISKLSRERIRDEFFKLLSCINLVNTLKIMQKCNVLQKI------IPFEV 236 Query: 246 LSQVIEAEQVFEW----KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 L VI + + K+ +LLR + +FS+ + IR S + Sbjct: 237 LPNVISSSVISHTEPIVKLAALLR--------------TNKNEFSIDK-IRD---SLYLS 278 Query: 302 NFNQK------------TLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNNLTHQDTCFI 348 N ++K LSI + +K +G K+ +KI A L NN H + Sbjct: 279 NSDKKLLLSLVNNNLELPLSIMDQQKYINKFGKKIYCYLIKIRHAELTLNN--HD----L 332 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +Q + + P FPL+G D + G G+ +G++L + W +S++QL++ L Sbjct: 333 VQYIEYADKFVIPEFPLSGKDFLAIGYQEGRHLGDVLKKLRNLWEDSAYQLTRHQLLEHG 392 Query: 409 RKLI 412 +KL+ Sbjct: 393 KKLL 396 >gi|33859692|ref|NP_081572.1| CCA tRNA nucleotidyltransferase 1, mitochondrial [Mus musculus] gi|37537798|sp|Q8K1J6|TRNT1_MOUSE RecName: Full=CCA tRNA nucleotidyltransferase 1, mitochondrial; AltName: Full=mitochondrial tRNA nucleotidyl transferase, CCA-adding; Short=mt CCA-adding enzyme; Short=mt tRNA CCA-diphosphorylase; Short=mt tRNA CCA-pyrophosphorylase; Short=mt tRNA adenylyltransferase; Flags: Precursor gi|21619331|gb|AAH31764.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Mus musculus] gi|74177896|dbj|BAE39032.1| unnamed protein product [Mus musculus] gi|74220479|dbj|BAE31459.1| unnamed protein product [Mus musculus] gi|148666980|gb|EDK99396.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_a [Mus musculus] Length = 434 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/400 (32%), Positives = 213/400 (53%), Gaps = 15/400 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L ++ L K + I GGAVRD L + QD+D ATT P ++ +F ++I Sbjct: 45 LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNK 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 105 GEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 164 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASI 191 + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ ++ D D L A Sbjct: 165 TLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHETLEAIA 224 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVI 250 + KGL +S ERIW E+ K+L + +N ++H+ Y+ G+ I L +L++ ++V Sbjct: 225 ENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPAN-ANLEEFNKVS 282 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + F K +LL L QD + L + K S + I + + T S Sbjct: 283 KNVEGFSPKPMTLL--ASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKATDSS 340 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 +K Y D V+ ++ A L +Q +L+ ++ W P FP++G D+ Sbjct: 341 EPLKP----YQDFVIDSREPDATARVCELLKYQGEHGLLK---EMQQWSVPPFPVSGHDI 393 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K GI GK++G +L +++W S +++ +++L ++K Sbjct: 394 RKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 433 >gi|148666981|gb|EDK99397.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Mus musculus] Length = 440 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 130/400 (32%), Positives = 213/400 (53%), Gaps = 15/400 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L ++ L K + I GGAVRD L + QD+D ATT P ++ +F ++I Sbjct: 51 LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNK 110 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 111 GEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 170 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASI 191 + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ ++ D D L A Sbjct: 171 TLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHETLEAIA 230 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVI 250 + KGL +S ERIW E+ K+L + +N ++H+ Y+ G+ I L +L++ ++V Sbjct: 231 ENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPAN-ANLEEFNKVS 288 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + F K +LL L QD + L + K S + I + + T S Sbjct: 289 KNVEGFSPKPMTLL--ASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKATDSS 346 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 +K Y D V+ ++ A L +Q +L+ ++ W P FP++G D+ Sbjct: 347 EPLKP----YQDFVIDSREPDATARVCELLKYQGEHGLLK---EMQQWSVPPFPVSGHDI 399 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K GI GK++G +L +++W S +++ +++L ++K Sbjct: 400 RKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 439 >gi|51473228|ref|YP_066985.1| NTP polymerase. [Rickettsia typhi str. Wilmington] gi|51459540|gb|AAU03503.1| NTP polymerase [Rickettsia typhi str. Wilmington] Length = 387 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 104/219 (47%), Positives = 143/219 (65%), Gaps = 3/219 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+LLNK + +S ++GG VRD+L+ DIDIAT ++P V+ I SK K+IPT + + Sbjct: 18 ILNLLNK-KGQSRLIGGCVRDALLEKDTYDIDIATNLIPSEVINILSKANIKIIPTGLKF 76 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVI 136 GTI I + F+ITTLR D+ +GR+AKV+FT+D+ D+ RRDFTINAL Y + ++ Sbjct: 77 GTITAILNNEKFEITTLRKDIECNGRHAKVIFTKDFAEDAARRDFTINALSYCPFKNEIY 136 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 DY G DL+ + FIG A +RI EDYLRILRFFRF ++Y + +D D A K G Sbjct: 137 DYFNGFKDLQQAKVVFIGKAFNRIKEDYLRILRFFRFSSYYANQ-LDDDSFKACKALKNG 195 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 LK LS ERI SEI+K++ +K + M+ GI + IF Sbjct: 196 LKTLSRERIKSEIDKIIVSKRVTQILEAMFEIGILELIF 234 >gi|45360665|ref|NP_989006.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus (Silurana) tropicalis] gi|38174205|gb|AAH61356.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus (Silurana) tropicalis] Length = 405 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 198/379 (52%), Gaps = 17/379 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L D+D ATT PD++ +F K ++I +GT+ + F Sbjct: 32 IAGGAVRDLLSGKQPHDVDFATTATPDQMKDMFLKQGVRLINNKGEKHGTVTARINDQNF 91 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N Sbjct: 92 EITTLRVDVQTDGRHAEVEFTTDWETDAERRDLTINSMFLGFDGTLYDYFNGYEDLKNHC 151 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAK-KGLKILSSERIWS 207 +KF+GD+ RI EDYLRILR+ RF+ +++ + G + +IK GL+ +S ERIW Sbjct: 152 VKFVGDSSQRIQEDYLRILRYLRFYGRISKRSGAHTSGTLDAIKENASGLRGISGERIWV 211 Query: 208 EINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+LE N +N ++ +Y G+ + L + +L++ ++V E K +LL Sbjct: 212 ELKKILEG-NHVNHLMQIIYELGVAPHVGL-PKGGNLEEFAKVCERSHRMSPKPMTLL-- 267 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L S D L + K S + + FL+ ++T + P Y+ + Sbjct: 268 TALFSNTDHVQNLDLRLKISKEEKNLALFLLQQRRELTAERTDAAPLKPFKDYVVDSREP 327 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A KI L Y Q+ ++ W P FP++G D+ + GI GK +G IL Sbjct: 328 DAHKKISELLKYQGEE--------QLFREMEGWTLPRFPVSGHDLRRMGISSGKDIGRIL 379 Query: 386 VHCKQEWINSSFQLSQEDL 404 ++ W S +Q S+E+L Sbjct: 380 QELREHWKESGYQASKEEL 398 >gi|189182930|ref|YP_001936715.1| poly(A) polymerase [Orientia tsutsugamushi str. Ikeda] gi|189179701|dbj|BAG39481.1| poly(A) polymerase [Orientia tsutsugamushi str. Ikeda] Length = 402 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 135/405 (33%), Positives = 222/405 (54%), Gaps = 18/405 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F ++ +L +L + I+GGA+R+ ++ V DIDIAT +LP++VM + K Sbjct: 10 FPSQNIEKLLLMLASSIKSARIIGGAIRNIILGHPVNDIDIATPLLPEQVMNLLKLNNIK 69 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-Y 128 T I +GT+ + +++ F+ITTLR D+ GRYAKV F+ D+ D+ RRDFTINAL Y Sbjct: 70 CYATGIKFGTVTAVIKQEKFEITTLRQDIQCYGRYAKVEFSNDYFEDAKRRDFTINALSY 129 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + +Q + DY GL DL++R + FIGD+ RI ED LRILRFFRF ++Y ++ID +G Sbjct: 130 SFEQSLLYDYFNGLQDLKDRRVIFIGDSDTRIQEDVLRILRFFRFSSYYA-RSIDQEGYQ 188 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 + K K L ILS ER+ E++K++ + N +V M I I L ++ ++L Sbjct: 189 SCAKYAKSLSILSKERVVQELSKIIISPNAYETLVKMAEINITYYIGLRLK-LNLSVFKN 247 Query: 249 VIEAEQVFEWKIDSLLRFIVLIS---WQDKKSILSMAK-KFSLPREIRYFLISFFNCNFN 304 V + ++ ++ + VL+S QD K ILS + ++ R+I + C Sbjct: 248 VTTIAKKKSILLNVIVLYSVLLSSNDVQDLKEILSNLRFSKAMIRKIVRLCLFLSEC--- 304 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 Q +I I+K + D + I LAL ++ ++ + Q + ++I P P Sbjct: 305 QSKNAIFLIRKYWLTRADNI---DDYINLALLLGCISDEEANMLKQQVYELI----PKLP 357 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++G D+ + G + + +L++ WINS F L++++L LL+ Sbjct: 358 VSGSDLKELGFKK-QAIQEVLLYLNHAWINSDFTLNKQELIDLLK 401 >gi|297670810|ref|XP_002813548.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like isoform 1 [Pongo abelii] gi|297670812|ref|XP_002813549.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like isoform 2 [Pongo abelii] Length = 434 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 204/385 (52%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + + F K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNVEGFSPKPMTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-YLYGDKVM 325 L QD + L + K + + I + + T S +K ++ + Sbjct: 297 ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNKKDLIKATDSSEPLKPYQDFIIDSREP 356 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 357 DAPTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 409 QQLREQWKKSGYQMEKDELLSYIKK 433 >gi|86136787|ref|ZP_01055365.1| polyA polymerase family protein [Roseobacter sp. MED193] gi|85826111|gb|EAQ46308.1| polyA polymerase family protein [Roseobacter sp. MED193] Length = 389 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 131/413 (31%), Positives = 205/413 (49%), Gaps = 29/413 (7%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +++ W D+ N+ S L ++ VGG VR++LM + V DIDIAT P V+ Sbjct: 1 MALAGETWIRDAATQNVCSALTAQGAEALFVGGCVRNALMGVPVSDIDIATDASPQEVLA 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + K IPT I +GT+ ++ + ++TT R D+ TDGR A V F++D D+ RRD Sbjct: 61 LAKSAGIKAIPTGIEHGTVTLVKDQIPHEVTTFRKDVATDGRRAVVAFSKDIAEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NA+YA G ++D +GG+ DL R ++FIG A +RI EDYLR LR+FRF A YG+K+ Sbjct: 121 FTMNAIYARPDGSIVDPLGGMADLAARRVRFIGTAENRIREDYLRTLRYFRFHAWYGDKD 180 Query: 182 I--DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D + L A +GL LS ER+ SE+ KLL A +P AI M G+ +I Sbjct: 181 AGFDPEALAAIAANLEGLSQLSLERVTSEVLKLLAAPDPAPAIAAMRQIGVLNQILPGAD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-LSMAKKFSLPREIRYFLISF 298 + SL L + + +D + R L + ++++ LS A E R + Sbjct: 241 DRSLAPLIHLQAHHPDRDISLDPVCRLAALGGSELQENLRLSKA-------EARLLV--- 290 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + + +L Y G + + + AL ++ + SD+ Sbjct: 291 ---HLREAATGVILPAELSYRLGRDIALQASVLRSALLEEPVSP-------NLGSDLARG 340 Query: 359 KKPLFPLTGDDVVKYGIP--PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + +FPL D+ +P G +G L + WI S F L++ +L L+ Sbjct: 341 SEAVFPLKAADL----MPDLSGSALGAALKKLESAWIQSGFTLNRNELLQKLK 389 >gi|67458411|ref|YP_246035.1| Poly(A) polymerase [Rickettsia felis URRWXCal2] gi|67003944|gb|AAY60870.1| Poly(A) polymerase [Rickettsia felis URRWXCal2] Length = 385 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 145/394 (36%), Positives = 218/394 (55%), Gaps = 37/394 (9%) Query: 18 ILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ILSLLN KG + ++GG VRD+L+ DIDIAT + PD V+ I SK + K IPT + Sbjct: 18 ILSLLNEKGHAR--LIGGCVRDALLEKDSYDIDIATNLTPDEVINILSKAKIKTIPTGLK 75 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKV 135 +GTI I ++ F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL Y + ++ Sbjct: 76 FGTITAILNEEKFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEI 135 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-K 194 DY G DL+ + FIG+A RI EDYLRILRFFRF ++Y N +DG + KA K Sbjct: 136 YDYFEGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYYA--NQLNDGSFKACKALK 193 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 GLK LS ERI SE++K++ +K + M + GI + IF +Q + Q E E Sbjct: 194 DGLKTLSRERIKSEMDKIIVSKKAAQILEAMSHIGILELIF-SIQNYEIKFFEQSKELEL 252 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF-LISFFNCNFNQKTLSIPEI 313 + ++L + ++ S L + KFS ++ +++F N S + Sbjct: 253 ATNYA-------LLLYNLKNINSKLLLDWKFSRQEAMQILSILNFLND-------SKDSM 298 Query: 314 KKLFYLYGD--KVMIAKLKIFLALHYNNLTH-QDTCFILQVLSDIIHWKKPLFPLTGDDV 370 KK+++ + + ++A KI L H Q FI + D++ +P F + G+D+ Sbjct: 299 KKIWFEKKNYKEYLLAACKI------GKLNHSQVKEFIYKY--DVLL--RPKFQVNGNDL 348 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + I K++G L + K WI F+ S+ +L Sbjct: 349 LNMNIEK-KEIGTKLEYLKNFWIEQDFKPSKLEL 381 >gi|332231563|ref|XP_003264964.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial [Nomascus leucogenys] Length = 434 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 203/385 (52%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDVDFATTATPSQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + + F K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNVEGFSPKPMTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L QD + L + K + + + F++ S P ++ + Sbjct: 297 ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREP 356 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 357 DATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 409 QQLREQWKKSGYQMEKDELLSYIKK 433 >gi|170055265|ref|XP_001863506.1| CCA-adding enzyme [Culex quinquefasciatus] gi|167875250|gb|EDS38633.1| CCA-adding enzyme [Culex quinquefasciatus] Length = 430 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 134/413 (32%), Positives = 211/413 (51%), Gaps = 49/413 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP- 72 +L +++ L + + + + GGAVRD LM L +DIDIATT P + IF+K +++ Sbjct: 28 ELEDLIELFRRYDHEIRVAGGAVRDILMGLCPKDIDIATTATPTEMKEIFTKENIRMVNM 87 Query: 73 TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GTI I ++ F+ITTLR D +TDGR+A+V+ T+DW D+ RRD TIN+++ Sbjct: 88 NGEKHGTITPRINDRENFEITTLRIDAVTDGRHAEVIHTKDWLLDANRRDLTINSMFLGF 147 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVA 189 G V DY G +DL+ R + F+GD RI EDYLRILR+FRF+ E+ N D + L Sbjct: 148 DGSVYDYFYGYDDLQKRRVAFVGDPDLRIKEDYLRILRYFRFYGRIAERIDNHDKETLRI 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K GL +S ERIW E K++ + V M N + I L ++ ++++ +V Sbjct: 208 IAKNASGLAKISGERIWQEWKKIMAGNFGCDLTVKMINSDLSASIGLP-EKPNVEEFVRV 266 Query: 250 IEA-EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLI----SFFNCN- 302 + E V I + L+ + L++ KF++ RE+ YFL F + N Sbjct: 267 FKNIESVQGGDIQPITPLSALLHTPEDAITLNLRLKFTVFERELAYFLTQNRDEFESVNE 326 Query: 303 ---FNQ---KTLSIPEIKKLFYL-----YGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351 F Q TL ++KK + L +G + + A+LK Sbjct: 327 LLPFQQLSLHTLGSAKLKKEYVLELLRYHGKRELYAQLK--------------------- 365 Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 W+ P FP+ G+ ++++G P G K+G ++ K W + F +S+ DL Sbjct: 366 -----EWQIPAFPIKGNVLIEHGAPKGPKLGLVMNELKMVWAANQFDMSEPDL 413 >gi|144897232|emb|CAM74096.1| Polynucleotide adenylyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 413 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 125/396 (31%), Positives = 202/396 (51%), Gaps = 8/396 (2%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 W ++ ++ L + VGG VRDS++ +++DIDIAT PDRVM + + Sbjct: 17 QAWMQAAETQAVIKALTADGAEVRFVGGCVRDSVLKRAIKDIDIATHDPPDRVMALLERA 76 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 +VIPT +++GT+ + K +++ITTLR D+ T GR+A+V FT DW AD+ RRDFT+NA Sbjct: 77 HIRVIPTGLAHGTVTAVVGKAHYEITTLREDVETFGRHARVSFTDDWTADAARRDFTMNA 136 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 ++AD QG++ D GGL DL ++F+GD RI ED LR+LRFFRFFAHYG +++S Sbjct: 137 MFADPQGRIYDPFGGLADLGAGHVRFVGDPFRRIEEDLLRLLRFFRFFAHYGRTSLESQA 196 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 + A K L LS ER+ E+ +LL+A +P ++ M GI + + EI ++ Sbjct: 197 MAACRKLAPRLVELSGERVAGELIRLLQAPDPALVLMVMKTNGILAHVLPEAVEIGRLKV 256 Query: 247 SQVIEAEQVFEWKI--DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 +E+ + I D L R ++S D I + ++ L ++S + Sbjct: 257 LTWLESRAMVRDTIHPDPLRRLAAMLS-ADAAGIAVLGERLKLSAAQTGRILSIVCPQVD 315 Query: 305 -QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN---LTHQDTCFILQVLSDIIHWKK 360 + + ++ G + + A H + L +++ +L HW+ Sbjct: 316 VRMDMDRRAARRALRRVGADTFRDLVLVAWAEHRSCSGLLDSRESRMWQDLLDQADHWQP 375 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 P+ G D + G+P G +G L + W Sbjct: 376 VELPVRGADCLDLGVPRGPAIGQALARV-EAWCEGG 410 >gi|296225724|ref|XP_002758621.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial [Callithrix jacchus] Length = 434 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 206/385 (53%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDVDFATTATPIQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 I+F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 IRFVGQAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + + F K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVASYIGLPAN-ASLEEFDKVSKNVEGFSPKPMTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 L QD + L + + + +E + + F + + + + Y D ++ Sbjct: 297 ASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIVKNRKDLIKAADTSEPLKPYQDCIID 352 Query: 327 AKLKIFLALHYNNLTHQ-DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 ++ L +Q + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 353 SREPDATTRVCELLKYQGEHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 409 QQLREQWKKSGYQMEKDELLSYIKK 433 >gi|157825180|ref|YP_001492900.1| Poly(A) polymerase [Rickettsia akari str. Hartford] gi|157799138|gb|ABV74392.1| Poly(A) polymerase [Rickettsia akari str. Hartford] Length = 385 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 144/398 (36%), Positives = 216/398 (54%), Gaps = 45/398 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ILSLLNK + ++ ++GG VRD+L+ S DIDIAT ++PD V I K K I T + + Sbjct: 18 ILSLLNK-KGQARLIGGCVRDALLEKSSYDIDIATNLIPDEVTNILLKANIKTIQTGLKF 76 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVI 136 GTI I + F+ITTLR D+ +GR+AKVVFT D+ D+ RRDFTINAL Y + ++ Sbjct: 77 GTITAILNNEQFEITTLRKDIECNGRHAKVVFTDDFAEDAARRDFTINALSYCPFKNEIY 136 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KK 195 DY G DLR + FIG+A RI EDYLRILRFFRF ++Y N DG+ + KA K Sbjct: 137 DYFEGFKDLRQEKVVFIGEALDRIKEDYLRILRFFRFSSYYT--NQLDDGIFKACKALKD 194 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQVIEAEQ 254 GLK LS ERI SE++K++ +K + M+ GI + IF + EI + S+ +E Sbjct: 195 GLKTLSRERIKSEMDKIIVSKRAEQILKAMFEIGILELIFSIQNYEIKFFEQSKALELAT 254 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF-LISFFNCNFNQKTLSIPEI 313 + ++L + ++ S L + KF+ I+ +I+F N + +I Sbjct: 255 NYA---------LLLYNLKNINSKLLLDWKFTKQEVIQILSIINFLNN-------AECDI 298 Query: 314 KKLFYL---YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLT 366 KK+++ Y + ++ A + L H + + IH PL F + Sbjct: 299 KKIWFEKKNYKEYLLAASI-------IGKLNHSQ-------VKEFIHKYDPLLRPKFQVN 344 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 G+D++ I K++G L + K WI+ F+ S+ +L Sbjct: 345 GNDLLNMNIEK-KEIGAKLEYLKNFWIDQDFKPSKSEL 381 >gi|281346452|gb|EFB22036.1| hypothetical protein PANDA_004022 [Ailuropoda melanoleuca] Length = 434 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 208/386 (53%), Gaps = 19/386 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGIKPQDVDFATTATPAQMKDMFQSAGIRMINNKGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFSGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + + L SL++ ++V + F K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVAPYLGLPTN-ASLEEFNKVSKNVDGFSPKPMTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYGDKV 324 L QD + L + K S + + F++ N+K L + + Y D + Sbjct: 297 ASLFKVQDDVTKLDLRLKISKEEKNLGIFIVK------NRKDLVKAADSSEPLKPYQDFI 350 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 + ++ + L +Q +LQ + W P FP++G D+ K GI GK++G + Sbjct: 351 IDSRESEAMTRVCELLKYQGEHGLLQQMQ---QWCIPPFPVSGHDIRKVGISSGKEIGAL 407 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRK 410 L +++W S +Q+ +++L ++K Sbjct: 408 LQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|149728339|ref|XP_001496927.1| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 1 [Equus caballus] Length = 434 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 204/385 (52%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDVDFATTATPAQMKEMFQSAGIRMINNKGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLQNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K + D + L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKLGDHDPETLEAIAENAKGLAAISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + + K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNVEGLSPKPMTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-YLYGDKVM 325 L QD + L + K S + I + + T S +K ++ + Sbjct: 297 ASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKATDSSEPLKPYQDFIIDSRES 356 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 357 DATTRVCELLKYQG----EQC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 ++ W S +Q+ +++L ++K Sbjct: 409 QQLRERWKKSGYQMEKDELLSYIKK 433 >gi|30750040|pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme gi|30750041|pdb|1OU5|B Chain B, Crystal Structure Of Human Cca-Adding Enzyme Length = 448 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID ATT P ++ +F ++I +GTI ++ F Sbjct: 75 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 134 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 135 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 194 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 195 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 254 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + F K +LL Sbjct: 255 ELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNVDGFSPKPVTLL-- 310 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L QD + L + K + + + F++ S P ++ + Sbjct: 311 ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREP 370 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 371 DATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 422 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 423 QQLREQWKKSGYQMEKDELLSYIKK 447 >gi|195107325|ref|XP_001998264.1| GI23728 [Drosophila mojavensis] gi|193914858|gb|EDW13725.1| GI23728 [Drosophila mojavensis] Length = 450 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 137/412 (33%), Positives = 214/412 (51%), Gaps = 26/412 (6%) Query: 10 FHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 FH +L ++++ K + + I GGAVRD LMN+ +DID ATT P+++ +F K Sbjct: 42 FHSIFTPELEALVAMFKKYDYELRIAGGAVRDILMNIKPKDIDFATTATPEQMKEMFGKE 101 Query: 67 RYKVI-PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 ++I +GTI I K+ F++TTLR D+ TDGR+A VVFT DW+ D+ RRD TI Sbjct: 102 EVRLINAKGEKHGTITPRIHNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANRRDLTI 161 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NID 183 N+++ G V DY G DL+ R + F+GDA RI EDYLRILR+FRF+ E+ + Sbjct: 162 NSMFLGFDGTVYDYFYGYEDLQQRRVVFVGDADVRIKEDYLRILRYFRFYGRIAERPDCH 221 Query: 184 SDGLVASIKAKK-GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 +A+IKA GL +S ERIW+E+ K++ I+ M N G+ ++ L + + Sbjct: 222 DKATLAAIKANAVGLARISGERIWAELQKIVVGNFNRELILEMNNCGLLQQCGLPIHP-N 280 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L++ +V + F +L I L+ ++ L K S I+ Sbjct: 281 LEEFERVCVDLKRFHEPHYPILYLIGLLHSSEQAMKLHERLKLSAYERDLALFITQQRER 340 Query: 303 FNQKTLSIPEIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 N + + + + +KL Y + + +L L Y N L++ + + W+ P Sbjct: 341 VNSEYVCLRDYQKLCLQPYAKRDYVEQL-----LKYANK--------LELYAQLKEWQMP 387 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P+ G+ + YG+ GK+VG +L + W +S F LS E LL K+ A Sbjct: 388 SLPINGNTLKPYGL-AGKQVGVVLNELRLLWADSDFTLSAE---QLLEKMPA 435 >gi|301760376|ref|XP_002915988.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 436 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 208/386 (53%), Gaps = 19/386 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGIKPQDVDFATTATPAQMKDMFQSAGIRMINNKGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFSGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + + L SL++ ++V + F K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVAPYLGLPTN-ASLEEFNKVSKNVDGFSPKPMTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYGDKV 324 L QD + L + K S + + F++ N+K L + + Y D + Sbjct: 297 ASLFKVQDDVTKLDLRLKISKEEKNLGIFIVK------NRKDLVKAADSSEPLKPYQDFI 350 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 + ++ + L +Q +LQ + W P FP++G D+ K GI GK++G + Sbjct: 351 IDSRESEAMTRVCELLKYQGEHGLLQQMQ---QWCIPPFPVSGHDIRKVGISSGKEIGAL 407 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRK 410 L +++W S +Q+ +++L ++K Sbjct: 408 LQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|4929563|gb|AAD34042.1|AF151805_1 CGI-47 protein [Homo sapiens] gi|15214805|gb|AAH12537.1| TRNT1 protein [Homo sapiens] Length = 405 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID ATT P ++ +F ++I +GTI ++ F Sbjct: 32 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 91 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 92 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 151 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 152 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 211 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + F K +LL Sbjct: 212 ELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNVDGFSPKPVTLL-- 267 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L QD + L + K + + + F++ S P ++ + Sbjct: 268 ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREP 327 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 328 DATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 379 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 380 QQLREQWKKSGYQMEKDELLSYIKK 404 >gi|328707317|ref|XP_003243360.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like [Acyrthosiphon pisum] Length = 458 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/412 (31%), Positives = 215/412 (52%), Gaps = 23/412 (5%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q+ + L +L + +K + + + GGAVRD L+ + D+D ATT PD ++ + Sbjct: 48 QYGFIFSPQLTTVLQVFDKYKYEIRLCGGAVRDILLRKTPTDLDFATTATPDEMVEMMEN 107 Query: 66 TRYKVI-PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +++ + +GT+ F++TTLR D++TDGR+A V +T+DW D+ RRD T+ Sbjct: 108 ENIRIVNKGGLKHGTVTTHVDGVNFELTTLRIDVVTDGRHADVEYTKDWLLDAGRRDLTV 167 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNID 183 N+++ G + DY GG DL+ R IKF+GD RI EDYLRILR+FRF+ N+ Sbjct: 168 NSMFLGMDGTIYDYFGGYEDLKKRQIKFVGDPKLRITEDYLRILRYFRFYGRLATAPNLH 227 Query: 184 SDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + ++ +I+ K GLK +S ERIWSE+ K+LE + I + N G+ I L + Sbjct: 228 DEYILEAIREKGSGLKNISGERIWSELYKILEGNYASDIIKTLLNLGLGPYIGLP-DHPN 286 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISW-QDKKSILSMAKKFS---LPREIRYFLISF 298 +D+ +VI + + LL +L + +D + ++ + + R++ FLI Sbjct: 287 IDEFDKVINRSKGLK-----LLPITMLTPFLKDVQDMIELNNRLKFRVFDRDLGLFLIES 341 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + T+ +IK + VM K+ I L YNN D +L + W Sbjct: 342 RDEKWTPDTIKTNKIKIIQNPTKQGVM--KVYIEQLLMYNN----DRI----ILEEFQKW 391 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP+TG+ + +G+ GKK+G IL + W + FQ E+L +L+ K Sbjct: 392 TPLKFPITGNMIKNHGVQDGKKIGIILRKLIEYWADDDFQTDIEELLNLIPK 443 >gi|254466149|ref|ZP_05079560.1| polyA polymerase family protein [Rhodobacterales bacterium Y4I] gi|206687057|gb|EDZ47539.1| polyA polymerase family protein [Rhodobacterales bacterium Y4I] Length = 383 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/410 (30%), Positives = 195/410 (47%), Gaps = 34/410 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W +D + + + VGG VR++L+ V D+DIAT P++VM + + Sbjct: 3 IDQPWLNDKATQAVCEAVTADGAQVLFVGGCVRNALLCEPVSDMDIATDARPEQVMELAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + K +PT I +GT+ ++ +ITT R D+ TDGR A V F+ D D+ RRDFT+ Sbjct: 63 RAGIKAVPTGIDHGTVTLVKNGIPHEITTFRKDVATDGRRAVVAFSTDIAEDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NI 182 NA+YA G+++D +GGL DL R ++FIG A HRI EDYLR LR+FRF A YG++ Sbjct: 123 NAIYARPDGEIVDPLGGLADLTKRRVRFIGTAEHRIREDYLRSLRYFRFHAWYGDQAEGF 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A GL LS ER+ +E+ KLL A +P ++ M G+ I + + Sbjct: 183 DPDALAAISANLDGLASLSKERVGAELVKLLAAPDPAPSVAAMRQAGVLALILPGADDRT 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L +EA + S +R + + + + L ++K + Sbjct: 243 LAPLIH-LEA-----GRAASGIRRLAALGGEGLQEALRLSKAQ-----------ASHLAA 285 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + +L Y G A+ + L L Q L++ DI + + Sbjct: 286 IRKAAAGTSQAGELGYRLG-----AQKALDALLLRAALLEQPLPLDLEI--DITQGARAV 338 Query: 363 FPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 FP+ D + P G +G + + WI S F L +E+L LR Sbjct: 339 FPVKARD-----LQPDLTGPDLGAAMKKMEANWIASGFTLCREELLDSLR 383 >gi|155030240|ref|NP_886552.2| CCA tRNA nucleotidyltransferase 1, mitochondrial [Homo sapiens] gi|16416451|dbj|BAB70662.1| tRNA-nucleotidyltransferase [Homo sapiens] gi|119584290|gb|EAW63886.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Homo sapiens] gi|119584293|gb|EAW63889.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Homo sapiens] gi|158261845|dbj|BAF83100.1| unnamed protein product [Homo sapiens] gi|168278132|dbj|BAG11044.1| tRNA-nucleotidyltransferase 1 [synthetic construct] gi|190690285|gb|ACE86917.1| tRNA nucleotidyl transferase, CCA-adding, 1 protein [synthetic construct] gi|190691659|gb|ACE87604.1| tRNA nucleotidyl transferase, CCA-adding, 1 protein [synthetic construct] Length = 434 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + F K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNVDGFSPKPVTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L QD + L + K + + + F++ S P ++ + Sbjct: 297 ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREP 356 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 357 DATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 409 QQLREQWKKSGYQMEKDELLSYIKK 433 >gi|296452848|sp|Q96Q11|TRNT1_HUMAN RecName: Full=CCA tRNA nucleotidyltransferase 1, mitochondrial; AltName: Full=Mitochondrial tRNA nucleotidyl transferase, CCA-adding; AltName: Full=mt CCA-adding enzyme; AltName: Full=mt tRNA CCA-diphosphorylase; AltName: Full=mt tRNA CCA-pyrophosphorylase; AltName: Full=mt tRNA adenylyltransferase; Flags: Precursor Length = 434 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + F K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNVDGFSPKPVTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L QD + L + K + + + F++ S P ++ + Sbjct: 297 ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREP 356 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 357 DATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 409 QQLREQWKKSGYQMEKDELLSYIKK 433 >gi|291408736|ref|XP_002720670.1| PREDICTED: CG2100-like [Oryctolagus cuniculus] Length = 431 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 127/386 (32%), Positives = 206/386 (53%), Gaps = 19/386 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ ++F ++I +GT+ ++ F Sbjct: 56 IAGGAVRDLLAGVKPQDVDFATTATPAQMKQMFQAAGVRMINNKGEKHGTVTARLHEENF 115 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 116 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 175 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ EK D + L A + GL +S ERIW Sbjct: 176 VRFVGQAKQRIQEDYLRILRYFRFYGRVVEKPGEHDPETLEAIAENAHGLAGISGERIWV 235 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L ++ ++ +VH+ Y+ + I L SL++ ++V + + F K ++L Sbjct: 236 ELKKILTGRH-VHHLVHLIYDLHVAPHIGLPAS-ASLEEFNKVTKNVEGFSPKPMTVL-- 291 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTL-SIPEIKKLFYLYGDKV 324 L QD + L + K S + + F++ N+K L + + Y D V Sbjct: 292 ASLFKAQDDVTKLDLRLKISKEEKNLGLFIVK------NRKDLVRAADSSESLRPYQDFV 345 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 + + A L +Q +L+ + W P FP++G D+ K G+ G+++G + Sbjct: 346 IDCREPDAAARVCELLKYQGEHGLLEQMRG---WSVPPFPVSGHDLRKEGVSSGREIGAL 402 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRK 410 L + W S +Q+ +E+L +RK Sbjct: 403 LQQLRARWKKSGYQMDKEELLSSIRK 428 >gi|194745490|ref|XP_001955221.1| GF18651 [Drosophila ananassae] gi|190628258|gb|EDV43782.1| GF18651 [Drosophila ananassae] Length = 487 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 136/405 (33%), Positives = 219/405 (54%), Gaps = 20/405 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-P 72 +L +++SL K + + I GGAVRD LMN+ +DID+ATT P ++ +F K ++I Sbjct: 80 ELESLVSLFKKYDYELRIAGGAVRDILMNMEPKDIDLATTATPSQMKEMFEKEEVRMINA 139 Query: 73 TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GTI I K+ F++TTLR D+ TDGR+A+VV+T DW+ D+ RRD TIN+++ Sbjct: 140 NGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVVYTTDWQLDANRRDLTINSMFLGL 199 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVA 189 G V DY G +DL+ R + F+GDA RI EDYLRILR+FRF+ + K D LVA Sbjct: 200 DGTVYDYFYGYDDLQERRVVFVGDADIRIKEDYLRILRYFRFYGRIAKDAKRHDEATLVA 259 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 GL +S ERIW+E+ K++ + ++ M +F+ I L + +L++ ++ Sbjct: 260 VKDNAAGLSRISGERIWTELQKIVVGNFGSDLLLEMNRCHLFEHIGLPGKP-NLEEFDRL 318 Query: 250 IEAEQVFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 +A + FE +L +L S D ++ + K + R++ F I+ + Sbjct: 319 CKALEKFEKPHYPILYMSGMLNSVNDAMAMHNRLKLSAYERDLALF-ITQHREKVDTDYK 377 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 SI + +KL + + + + L Y+N L + + W KP FP+ G Sbjct: 378 SIRDYQKLCI----QPNVNRDYVEQLLKYSN--------KLVLYQQLKSWSKPNFPVNGH 425 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + G+ GKKVG ++ K W +S F+ + EDL L+ +++A Sbjct: 426 SLSSLGL-KGKKVGQVMNELKLHWADSDFKSTSEDLLKLVPEIVA 469 >gi|16416453|dbj|BAB70663.1| tRNA-nucleotidyltransferase [Mus musculus] Length = 434 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/400 (32%), Positives = 212/400 (53%), Gaps = 15/400 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L ++ L K + I GGAVRD L + QD+D ATT P ++ +F ++I Sbjct: 45 LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNK 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 105 GEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 164 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASI 191 + DY G DL+N+ ++F+G A RI EDYLRILR+ RF+ ++ D D L A Sbjct: 165 TLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYIRFYGRIVDRPGDHDHETLEAIA 224 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVI 250 + KGL +S ERIW E+ K+L + +N ++H+ Y+ G+ I L +L++ ++V Sbjct: 225 ENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPAN-ANLEEFNKVS 282 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + F K +LL L QD + L + K S + I + + T S Sbjct: 283 KNVEGFSPKPMTLL--ASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKATDSS 340 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 +K Y D V+ ++ A L +Q +L+ ++ W P FP++G D+ Sbjct: 341 EPLKP----YQDFVIDSREPDATARVCELLKYQGEHGLLK---EMQQWSVPPFPVSGHDI 393 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K GI GK++G +L +++W S +++ +++L ++K Sbjct: 394 RKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 433 >gi|66730382|ref|NP_001019432.1| tRNA-nucleotidyltransferase 1, mitochondrial [Rattus norvegicus] gi|66267368|gb|AAH95841.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Rattus norvegicus] gi|111493965|gb|AAI05613.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Rattus norvegicus] Length = 434 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 130/400 (32%), Positives = 211/400 (52%), Gaps = 15/400 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L ++ L K + I GGAVRD L + QD+D ATT P + +F ++I Sbjct: 45 LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTEMKEMFQAAGIRMINNK 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 105 GEKHGTITARLHEENFEVTTLRIDVSTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 164 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASI 191 + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K D D L A Sbjct: 165 TLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDRETLEAIA 224 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVI 250 + KGL +S ERIW E+ K+L + +N ++H+ Y+ + I L +L++ ++V Sbjct: 225 ENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLDVASHIGLPAN-ANLEEFNKVS 282 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + F K ++L L QD + L + K S + I + + T S Sbjct: 283 KNVEGFSPKPMTVL--ASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKATDSS 340 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 +K Y D V+ ++ A L +Q +L+ ++ W P FP++G D+ Sbjct: 341 EPLKP----YQDFVIDSREPDATARVCELLKYQGEHALLK---EMQQWSVPPFPVSGHDI 393 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 394 RKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|83942051|ref|ZP_00954513.1| polyA polymerase family protein [Sulfitobacter sp. EE-36] gi|83847871|gb|EAP85746.1| polyA polymerase family protein [Sulfitobacter sp. EE-36] Length = 367 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 197/377 (52%), Gaps = 30/377 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR++L+ ++ D+D++T LP+RVM + ++ K +PT + +GT+ ++ K F++ Sbjct: 11 VGGCVRNALLGVADSDVDMSTNALPERVMALAARAGLKAVPTGVEHGTVTVVSGGKGFEV 70 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 TT R D+ TDGR A V F+ D+LRRDFT+NALYAD QG+VID + GL DLR R ++ Sbjct: 71 TTFRRDVETDGRRAVVAFSDSILDDALRRDFTMNALYADSQGRVIDPLEGLVDLRARRVR 130 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEI 209 FI DA RI EDYLR LR+FRF A Y + + D + L A GL+ LS+ERI +E+ Sbjct: 131 FIEDAAQRIREDYLRTLRYFRFCAWYADPIEGFDPEALAAIAAHTDGLESLSAERIGAEL 190 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-LSQVIEAEQVFEWKIDSLLRFIV 268 KLL A +P A+ M G+ I S D+ L V+ EQ+ + +D R Sbjct: 191 TKLLTAPDPAPAVAAMRQTGVLGTILPG----SDDRWLGMVVHFEQLLQMSVDWRTRLAA 246 Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 L +D L ++K + +L + +T + + ++ G + A Sbjct: 247 L-GGEDIDQRLRLSKADA------KYLHRLKEAAYGGET-----VAAIAHIDGGDMARAV 294 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVH 387 + + L +T VL I + +FP+ D++ +Y G +G L Sbjct: 295 VVLRACL-------SETPPDATVLDRIAQAETAVFPVQAADLMPEY---TGPALGRRLAE 344 Query: 388 CKQEWINSSFQLSQEDL 404 + WI S F +++ L Sbjct: 345 LRAHWIASGFAATRDSL 361 >gi|23016115|ref|ZP_00055875.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum magnetotacticum MS-1] Length = 435 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/416 (28%), Positives = 207/416 (49%), Gaps = 23/416 (5%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W ++ +L+ L + VGG VRD+L+ ++DIDIAT P+RV+ + Sbjct: 22 WMDAAETRAVLAALQADGAQVRFVGGCVRDALLKRPIKDIDIATPDPPERVLALLDDAGI 81 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 IPT I +GT+ + K +++ITTLR D+ + GR+A++ +T DW+ D+ RRDFT+NAL Sbjct: 82 HAIPTGIDHGTVTAVIGKAHYEITTLRVDVESFGRHARIQYTDDWRVDASRRDFTMNALS 141 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGL 187 AD +G V D G+ D+ ++F+G+ RI ED LR+LR+FRF AHYG +++ L Sbjct: 142 ADPEGNVYDPFDGIADMAAGRVRFVGEPEKRIEEDALRLLRYFRFHAHYGRGTAMEARAL 201 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A + LK LS ER+ E+ +LL A +P +++ M++ GI + + +E + Sbjct: 202 HACRRMAGRLKNLSGERVAGELVRLLLADDPTPSLLVMHSRGILAHVLPEAKEFGRLRTL 261 Query: 248 QVIEAEQV--FEWKIDSLLRFIVLISWQDKKSILSMAKKFSL----PREIRYFLISFFNC 301 +E + E + D++ R LI+ D+ +++ ++ L + + Sbjct: 262 AWLERRGLARAEIRPDAMRRLAALIA-TDRNGAMALGERLKLSGVQAKRVAAMAAPRVTV 320 Query: 302 NFNQKTLSIPEIKKLFYLYG-----DKVMIA-KLKIFLALHYNNLTHQDTCFILQVLSDI 355 +F T+ ++ G D ++A + L + + +L D Sbjct: 321 DF---TMDAQAARRALRKVGSDEFRDLTLVAWAGRRSLEARPDAAESERWIALLDAARD- 376 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 W P+ G D+++ G+P G ++G +L + W + + D + L KL Sbjct: 377 --WVPVELPVKGRDLMERGVPHGPRIGGLLAALEDWWEERDY---RPDRNQCLEKL 427 >gi|114585219|ref|XP_001140761.1| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 1 [Pan troglodytes] gi|114585221|ref|XP_001140902.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial isoform 3 [Pan troglodytes] Length = 434 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 202/385 (52%), Gaps = 17/385 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID A+T P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDIDFASTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L N +N ++H+ Y+ + I L SL++ +V + F K +LL Sbjct: 241 ELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNVDGFSPKPMTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L QD + L + K + + + F++ S P ++ + Sbjct: 297 ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREP 356 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 357 DATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 409 QQLREQWKKSGYQMEKDELLSYIKK 433 >gi|209154746|gb|ACI33605.1| tRNA-nucleotidyltransferase 1, mitochondrial precursor Mitochondrial [Salmo salar] Length = 430 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 125/401 (31%), Positives = 210/401 (52%), Gaps = 24/401 (5%) Query: 13 SDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 SD +N I + K + + I GGAVRD L +D+D ATT P+ + +F K ++I Sbjct: 38 SDGLNGIAEIFEKHKFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQKAGIRMI 97 Query: 72 PT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI + F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 98 NNKGEKHGTITARLHNENFEVTTLRVDVETDGRHAEVEFTTDWQKDAERRDLTINSMFLG 157 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLV 188 G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ K + D L Sbjct: 158 LDGTLYDYFQGYEDLKNRKVRFVGSAEQRIQEDYLRILRYFRFYGRVSVKAAEHDPATLE 217 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A + +GL +S ERIW E+ K++ + + + MY G+ Q I L Sbjct: 218 AIRENARGLAAISGERIWVELKKMVVGNHAAHLLKVMYELGL-------AQYIGLPAEGD 270 Query: 249 VIEAEQVFEWKIDSLLRFIVLIS--WQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-Q 305 V E +Q+++ D + + ++S ++ + + M + + RE + + + Sbjct: 271 VEELKQIWQHVKDHSPKPVTVLSALFRCSQDVEKMDLRLKVSREEKNLGLFLVKHRRDLH 330 Query: 306 KTLSIPEIKKLF--YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 K+ P+ K + ++ + + A+ K+ L Y +D ++L+++ W P F Sbjct: 331 KSQDDPDSLKPYTDFIIDSREVDAQSKVCELLKYQG---ED-----KLLAEMSRWSIPRF 382 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P++G D+ K GI GK++G L + + W S +Q+ +++L Sbjct: 383 PVSGHDLRKMGITSGKEIGTTLQNLRDVWKRSRYQMDKDEL 423 >gi|149412778|ref|XP_001506360.1| PREDICTED: similar to tRNA-nucleotidyltransferase, partial [Ornithorhynchus anatinus] Length = 433 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 118/382 (30%), Positives = 207/382 (54%), Gaps = 13/382 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTIKIICRKKYF 89 I GGAVRD L D+D ATT PD++ +F ++I ++GTI ++ F Sbjct: 61 IAGGAVRDLLSGTPPHDVDFATTATPDQMKMMFKAAGVRLINHKGENHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVMTDGRHAEVEFTTDWEKDAGRRDLTINSMFLGFDGTLYDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSERIWS 207 ++F+G + RI EDYLRILR+FRFF E + D D L A KGL +S ERIW Sbjct: 181 VRFVGLPNKRIQEDYLRILRYFRFFGKIAENPDDHDPDTLKAIKGNAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+L + + + MY + I L +++L++L +V + + S + F+ Sbjct: 241 ELKKILVGNHVEHLVRLMYELDVAYYIGLPT-DVNLEELDKVYKNTRNLSA---SPITFL 296 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 + ++D+ + + + + ++ + ++ F + + + + + D ++ + Sbjct: 297 TSL-FRDQDDVTKLDFRLKISKQEKN--LALFLLKHRKDLIKAADSSEPLKPFQDFILDS 353 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + Y L +Q +L+ + + W PLFP+TG D+ K GI GK++G ++ Sbjct: 354 RDPGTTDRIYELLKYQGEGALLKEMQN---WSIPLFPVTGHDIRKMGISSGKEIGTVIQQ 410 Query: 388 CKQEWINSSFQLSQEDLHHLLR 409 +++W S +Q+ +++L L++ Sbjct: 411 LREQWKKSGYQMDKDELLCLIK 432 >gi|209966674|ref|YP_002299589.1| polyA polymerase family protein [Rhodospirillum centenum SW] gi|209960140|gb|ACJ00777.1| polyA polymerase family protein [Rhodospirillum centenum SW] Length = 424 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 131/407 (32%), Positives = 196/407 (48%), Gaps = 21/407 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L + ++ VGG VRD+++ D+DIAT + PD VMR + +V+PT I + Sbjct: 21 VLQALMRTGQEARFVGGCVRDAVLGQEADDVDIATPLPPDEVMRRLKQDGIRVVPTGIRH 80 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GT+ I F+ITTLR D+ T GR+A+V FT DW D+ RRDFT NAL +G + D Sbjct: 81 GTVTAIRDGHAFEITTLRRDVETYGRHARVEFTDDWLEDARRRDFTFNALSLSSEGDLYD 140 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL DL ++F+GDA RI ED LRILR+FRF A +G+ +D D + A L Sbjct: 141 PFGGLADLSAGRVRFVGDAEARIREDVLRILRYFRFHARFGKGGLDDDAIAACAAQAPLL 200 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 LS ER+ E+ +L + M GI + + Q +D L+ A E Sbjct: 201 PTLSGERVREELLRLFATDRAVETWRLMLERGIIQHLL--PQATRIDTLA----ALDRLE 254 Query: 258 WKI---DSLLRFIVLI---SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSI 310 W + L + L+ + + + L++A + L R L+ L + Sbjct: 255 WMVGEAGPLTQLAALLPRGGEEGRAAALAVADRMRLSNAQRDRLLVLCAPPLAVDAGLDV 314 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-ILQVLSDIIHWKKPLFPLTGDD 369 ++ G ++ + L L + T F IL+ L++ W+ FPL G D Sbjct: 315 RGRRRALQTVGPEL----FRDLLLL--DTATRGIPAFEILESLAEAAAWRVIPFPLKGQD 368 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED-LHHLLRKLIASS 415 V G+P G VG +L + W ++ +ED L L R+L A Sbjct: 369 AVDRGVPQGPAVGRLLEAVEGWWAGRDYRPGREDCLAELERRLAAPP 415 >gi|221111472|ref|XP_002167859.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1 [Hydra magnipapillata] Length = 297 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 101/242 (41%), Positives = 152/242 (62%), Gaps = 3/242 (1%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 +N + K+ +VGG VRD++ + +D+DI TT+LP+ + R+F + +KVIPT I Sbjct: 6 LNSFKTIKSKNHKARLVGGVVRDAIFGIESKDVDIITTMLPEEITRVFEELGHKVIPTGI 65 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGK 134 +GT+ I+ + F+ITTLR D+ +DGR+++V FT D+ D+LRRDFTINAL Y + Sbjct: 66 KHGTVSILYNNELFEITTLRKDISSDGRHSEVEFTGDFHVDALRRDFTINALSYCPFEET 125 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 V DY G+ L+ +KFIG+ RI EDYLRILRFFRF+ +G K ID D L A IK + Sbjct: 126 VYDYFNGIEHLKLGCVKFIGNPESRIQEDYLRILRFFRFYGKFG-KIIDKDSLDACIKYR 184 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 +K LS ERI SE++ +L N + I M + I +E+F + I +++ ++ + Sbjct: 185 SSIKKLSRERIKSELDSILNLPNYFDVIRLMNDHSILQEVF-PISTIDIEKFTKANDIAN 243 Query: 255 VF 256 +F Sbjct: 244 IF 245 >gi|316966728|gb|EFV51271.1| poly(A) polymerase [Trichinella spiralis] Length = 750 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 127/413 (30%), Positives = 218/413 (52%), Gaps = 35/413 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PT 73 L+ I L K + I GGAVRD L+N+ DID+ATT P+ + ++F + +V+ Sbjct: 50 LMEIKQLFEKKGYEIRIAGGAVRDLLLNIIPVDIDLATTARPEEMNQLFLENSIRVLNKG 109 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ +++ F+ITTLR D GR+A+V FT DW D+ RRD T+N+++ D G Sbjct: 110 GEKHGTVTCRIQEQNFEITTLRVDKFCHGRHAEVEFTTDWFLDASRRDLTVNSMFMDFDG 169 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIK 192 V DY GG++DL+ R I F+GD + RI EDYLRILR+FRF+ +K+ + D +++IK Sbjct: 170 TVYDYFGGVDDLKKRRILFVGDPNQRIQEDYLRILRYFRFYGRLSDKSDEHDLSTLSAIK 229 Query: 193 AK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 +GL +S ERIW E+ +++ + + I M++ GI+ I L + ++ ++V Sbjct: 230 HNAEGLSSISGERIWLELKRIVVGRYGHSVIATMFDCGIYPYIGLP-KNPPIENFAEVFI 288 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F+ +++ ++ ++++ I + + L E R +I F + I Sbjct: 289 TAEAFKPLSITMISALL----ENEQQICDLNSRLKLSTEER--VICEFIVGKRDEAKKIT 342 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLT-------HQDTCFILQ------VLSDIIHW 358 +++ + K F + YN T ++ +C +++ L I W Sbjct: 343 DLQH------------QTKYFKNVCYNAYTRSCTPDSYKRSCELMKYHGFGDALKIIESW 390 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K P FP+TG + I PG + IL Q+W+NS FQ++ +L +++L Sbjct: 391 KPPKFPVTGHMLAHLNIKPGPVMTVILTRLFQKWMNSEFQMTAGELIDAVKEL 443 >gi|158290773|ref|XP_312336.4| AGAP002600-PA [Anopheles gambiae str. PEST] gi|157018058|gb|EAA08067.4| AGAP002600-PA [Anopheles gambiae str. PEST] Length = 437 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 132/401 (32%), Positives = 209/401 (52%), Gaps = 17/401 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L ++++L + + + GGAVRD LMN++ +D+DIATT P + IF+K +++ Sbjct: 36 QELKDLIALFERYNFEIRVAGGAVRDILMNMNPKDVDIATTATPTEMKEIFTKENIRMVN 95 Query: 73 -TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI I ++ F+ITTLR D ITDGR+A+V+ T DW D+ RRD TIN+++ Sbjct: 96 MNGEKHGTITPRINDRENFEITTLRIDAITDGRHAEVIHTTDWLLDANRRDLTINSMFLG 155 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLV 188 G + DY G DL+ R + F+GD RI EDYLRILR+FRF+ E++ D + L Sbjct: 156 FDGTLYDYFYGYEDLQKRRVAFVGDPDMRIKEDYLRILRYFRFYGRIAEESNRHDEETLR 215 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 K +GL +S ERIW E K+L + M N + + L ++ + + Sbjct: 216 IITKNAEGLARISGERIWQEWKKILSGNFGIELTEAMINCQLAPHMGLP-DAPNVPEFLR 274 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFFNCNFNQKT 307 V + + F+ K+ + L++ + L+M KF++ RE+ YF+ ++T Sbjct: 275 VAKQVRSFDPKLQPITVLSALLNTPEDAVNLNMRLKFTVYERELCYFI-----TQNREET 329 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 +I E+ L + KLK L L + + Q L D W P FP+ G Sbjct: 330 ATIDELLPFQQLCLQTISSVKLKKEYVLEL--LKYHGKRELYQQLLD---WPIPQFPIKG 384 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED-LHHL 407 + ++ G P G K+G +L K W N+ + ++QE L HL Sbjct: 385 NVLIANGAPKGPKLGVVLDRLKIIWSNNQYNMTQEQLLEHL 425 >gi|57239582|ref|YP_180718.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden] gi|58579571|ref|YP_197783.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden] gi|57161661|emb|CAH58591.1| putative nucleic acid independent RNA polymerase [Ehrlichia ruminantium str. Welgevonden] gi|58418197|emb|CAI27401.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden] Length = 397 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 141/424 (33%), Positives = 219/424 (51%), Gaps = 48/424 (11%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 + + +++D++ I + + K + +VGG VRD+++ DID ATT+LP +++ + Sbjct: 3 NNFANNNDILLITNAIKKYQGDIRLVGGCVRDNILKRQTVDIDFATTLLPYQIIEALNIA 62 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 K IPT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NA Sbjct: 63 HIKSIPTGIKHGTITAIVNNTAYEITTLRSDIYCDGRHAEVKFTNNWQQDASRRDFTFNA 122 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 LY D++G V DY G+ DL+N+ + FIGD RI EDYLRILR FRF A ++ SD Sbjct: 123 LYCDEKGIVYDYFSGIQDLKNKQLNFIGDPETRIQEDYLRILRAFRFHAAICSQDKLSDI 182 Query: 187 LVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++ S K + LS ERI E KLL N +N + M + ++I I + Sbjct: 183 IIQSCTKYASCISKLSRERIRDEFFKLLSCINLVNTLKIMQKCNVLQKI------IPFEV 236 Query: 246 LSQVIEAEQVFEW----KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 L VI + + K+ +LLR + +FS+ + IR S + Sbjct: 237 LPNVISSTVISHTEPIVKLAALLR--------------TNKNEFSIDK-IRD---SLYLS 278 Query: 302 NFNQK------------TLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNNLTHQDTCFI 348 N ++K LSI + +K G K+ +KI A L NN H + Sbjct: 279 NSDKKLLLSLVNNNLELPLSIMDQQKYINKLGKKIYCYLIKIRHAELTLNN--HD----L 332 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +Q + + P FPL+G D + G G+ +G++L + W +S++QL++ L Sbjct: 333 VQYIEYADKFVIPEFPLSGKDFLAIGYQEGRHLGDVLKKLRNLWEDSAYQLTRHQLLEHG 392 Query: 409 RKLI 412 +KL+ Sbjct: 393 KKLL 396 >gi|310817143|ref|YP_003965107.1| polyA polymerase family protein [Ketogulonicigenium vulgare Y25] gi|308755878|gb|ADO43807.1| polyA polymerase family protein [Ketogulonicigenium vulgare Y25] Length = 373 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 132/397 (33%), Positives = 194/397 (48%), Gaps = 33/397 (8%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W H S L +I + L ++ VGG VR++++ D+D+AT P +V S R Sbjct: 7 WLHHSALQDICATLTGAGHQAWFVGGCVRNAVIGGGATDVDMATDATPAQVKAALSGLR- 65 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + T I +GTI ++ + +ITT R D+ TDGR+A+VVF D D+ RRDFT+NALY Sbjct: 66 -TVDTGIDHGTITVLTAQGPVEITTFRRDVETDGRHARVVFGTDLAEDAARRDFTMNALY 124 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGL 187 A G + D VGGL D + T++FIGDA RI EDYLRILRFFRF A YGE ID+DGL Sbjct: 125 AAPDGTLADPVGGLPDALSGTVRFIGDAPTRIREDYLRILRFFRFHAWYGEAGAIDADGL 184 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A + G++ LS ER+ +E+ KLL A +P AI M G+ I L L Sbjct: 185 AACAELADGIEGLSRERVGAEMRKLLSAPDPAPAIAAMAQSGVLLRIL---PGAGLGTLP 241 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 ++ E + + +R + I +D +L ++ E R L N Sbjct: 242 ALVHIEGLMALP-PAPMRRLAAIGGEDAARLLRLSNA-----EAR-VLAQMQNPQ----- 289 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 + + Y YG + + + + + + D L+ + +K FPL Sbjct: 290 ----PLHEAAYRYGADIAL-DMAVITYASLSQMPPAD----LRARAGWAAAQK--FPLKS 338 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 D+ G +G L + WI S F L +++L Sbjct: 339 SDLPLS----GPALGQALRAAEARWIASDFSLGKDEL 371 >gi|21357337|ref|NP_649578.1| CG2100, isoform A [Drosophila melanogaster] gi|281360112|ref|NP_001163512.1| CG2100, isoform B [Drosophila melanogaster] gi|7296685|gb|AAF51964.1| CG2100, isoform A [Drosophila melanogaster] gi|16183624|gb|AAL13714.1| GM13341p [Drosophila melanogaster] gi|220944702|gb|ACL84894.1| CG2100-PA [synthetic construct] gi|220954638|gb|ACL89862.1| CG2100-PA [synthetic construct] gi|272476817|gb|ACZ94811.1| CG2100, isoform B [Drosophila melanogaster] Length = 477 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 133/408 (32%), Positives = 216/408 (52%), Gaps = 20/408 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V+ + K +L ++++L K + + I GGAVRD LM + +DID+ATT PD++ + Sbjct: 63 VATPEFKSIFTPELNDLVALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPDQMKQ 122 Query: 62 IFSKTRYKVI-PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F K ++I +GTI I K+ F++TTLR D+ TDGR+A+V++T DW+ D+ R Sbjct: 123 MFEKEEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANR 182 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 RD TIN+++ G V DY G +DL+ R + F+G+A RI ED+LRILR+FRF+ Sbjct: 183 RDLTINSMFLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIAS 242 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 E N D L A + KGL +S ERIWSE+ K++ + M+ +F+ I L Sbjct: 243 EENNHDKATLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIGLP 302 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLI 296 +E LD+ ++ +A FE +L +L S +D + K + R++ F+ Sbjct: 303 -KEPYLDEFDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKLSAYERDLARFIT 361 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 +Q T K Y + + +L L Y+ L++ + + Sbjct: 362 QEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQL-----LKYSG--------KLELYNQLK 408 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 W KP FP+ G+ + + G+ G ++G ++ K W +S FQL+ +DL Sbjct: 409 SWVKPDFPIRGNALAQRGL-NGMRLGLVMDELKLLWADSDFQLTHDDL 455 >gi|126463626|ref|YP_001044740.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides ATCC 17029] gi|126105290|gb|ABN77968.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides ATCC 17029] Length = 380 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 103/267 (38%), Positives = 152/267 (56%), Gaps = 7/267 (2%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W + ++L + ++ VGG VR++L+ V DID+AT +P V + S Sbjct: 3 VSGDWLVQPATQRLCAVLAEAGHRALFVGGCVRNALLGRPVSDIDLATDAVPAAVSALAS 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG ++ + Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + + Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPARSVASMECAGVLAVVLPGAEARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVL 269 L L +E + +W LLR L Sbjct: 243 LPVLVH-LEEGRAPDW----LLRLASL 264 >gi|115640822|ref|XP_787015.2| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1 [Strongylocentrotus purpuratus] gi|115929252|ref|XP_001177380.1| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1 [Strongylocentrotus purpuratus] Length = 411 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 128/403 (31%), Positives = 209/403 (51%), Gaps = 18/403 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-P 72 +L + L K + + I GGAVRD L +S QD+D AT PD++ +F+K ++I Sbjct: 15 ELKQLAELFEKYQYELRIAGGAVRDLLTKVSPQDVDFATIATPDQMKEMFTKEGIRMINA 74 Query: 73 TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GTI I K+ F+ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 75 KGEKHGTITARINDKENFEITTLRIDRVTDGRHAEVEFTTDWRTDAERRDLTINSMFLGL 134 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 G + D+ G L + F+G+A RI EDYLRILR+FRF+ E N + + + Sbjct: 135 DGTLYDFFNGKEALERCHVAFVGNAATRIQEDYLRILRYFRFYGRIARESNKHTPETLQA 194 Query: 191 IKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I+ GL +S ERIW E+ K+L + I MY+ + + I L E L +L +V Sbjct: 195 IRENGHGLAGISGERIWMEVRKILTGNFAADLIHCMYDLDLARHIGLP-PEADLQELHKV 253 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + Q ++L + ++D+ +L+M ++ + E R + + K Sbjct: 254 YQRSQSLHPHPVTVLSAL----FKDENDVLTMEQRMRISAEERKTAL-YVIAERGDKPHK 308 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P Y D V+ +K K + L ++ Q+L D W FPL+G D Sbjct: 309 NP-----LKPYQDIVVCSKEKNIIKYVSEVLKYRGES---QMLVDFRSWDVAKFPLSGKD 360 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++ G+P G+ +G ++ +Q W++S F+ ++E+L L++ + Sbjct: 361 LLAAGVPKGRGLGGVMETVRQWWMDSDFKATKEELLERLQETM 403 >gi|332559679|ref|ZP_08414001.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides WS8N] gi|332277391|gb|EGJ22706.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides WS8N] Length = 380 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/267 (38%), Positives = 152/267 (56%), Gaps = 7/267 (2%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + ++L + ++ VGG VR++L+ V DID+AT +P V + S Sbjct: 3 ISGDWLVQPATQRLCAVLTEAGHRALFVGGCVRNALLGRPVSDIDLATDAVPAAVSALAS 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG ++ + Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + + Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPAPSVASMECAGVLAVVLPGAEARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVL 269 L L +E + +W LLR L Sbjct: 243 LPVLVH-LEEGRAPDW----LLRLASL 264 >gi|114326216|ref|NP_001039341.1| tRNA-nucleotidyltransferase 1, mitochondrial [Bos taurus] gi|92096972|gb|AAI14832.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Bos taurus] gi|296474963|gb|DAA17078.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Bos taurus] Length = 434 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 202/384 (52%), Gaps = 15/384 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLSGVKPQDVDFATTATPAQMKELFQSVGIRMINNKGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVATDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ + D D L A + KGL +S ERIW Sbjct: 181 VRFVGQAKQRIQEDYLRILRYFRFYGKIVDTPGDHDPETLEAIAENAKGLAGVSGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L + +N ++H+ Y + I L SL++ ++V + + F K +LL Sbjct: 241 ELKKILTGDH-VNHLIHLIYELDVAPYIGLPAN-ASLEEFNKVSKNVEGFSPKPMTLL-- 296 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 L QD + L + K S + + F + + + + Y D ++ Sbjct: 297 TSLFKVQDDVTKLDLRLKISKEEKN----LGLFIVKNRKDLIKAVDSSEPLKPYQDFIID 352 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 ++ A L +Q +L+ + W P FP++G D+ K GI GK++G +L Sbjct: 353 SREADATARVCELLKYQGEHGLLKQMQ---QWSIPPFPVSGHDIRKVGISSGKEIGVLLQ 409 Query: 387 HCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +QL +++L ++K Sbjct: 410 QLREQWKKSGYQLEKDELLSYIKK 433 >gi|114762223|ref|ZP_01441691.1| polyA polymerase family protein [Pelagibaca bermudensis HTCC2601] gi|114545247|gb|EAU48250.1| polyA polymerase family protein [Roseovarius sp. HTCC2601] Length = 363 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 191/388 (49%), Gaps = 31/388 (7%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +L + + VGG VR++L V D+DIAT PD V+ + K +PT I +GT+ Sbjct: 1 MLEQAGHAAYAVGGCVRNALFGAPVADVDIATDARPDTVVALAVAAGLKPVPTGIDHGTV 60 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 ++ ++TT R+D+ TDGR A V ++ D D+ RRDFT+NALYAD +G+V+D + Sbjct: 61 TVVAEGIGHEVTTFRADVETDGRRAVVRYSDDIAEDAARRDFTMNALYADARGEVLDPLN 120 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLK 198 GL DL R ++FI DA RI EDYLRILRFFRF A YG+ + +D + L GL Sbjct: 121 GLPDLEARRVRFIRDAGERIREDYLRILRFFRFHAWYGDPDAGVDEEALAGIATNLDGLA 180 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS+ER+ EI +LL A +P ++ M G+ + + L+ ++ EQ Sbjct: 181 ALSAERVGHEITRLLSASDPAPSVAVMEQVGVLARVLPGA---TSRMLAPLVALEQSAAL 237 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 D + R VL + + LS A++ L E LIS + + + Y Sbjct: 238 PPDPMRRLAVLGYFDARSLRLSKARQRHL--EAYQSLIS-AGTGYTE----------IAY 284 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP-- 376 +G+ A + AL +L + + I P+ D+ +P Sbjct: 285 RHGE----AMARDVAALRSASLGQP---MPEDLEAQIATGAGATLPIRPRDL----MPEF 333 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDL 404 G +G+ L ++ WI S F L++ DL Sbjct: 334 EGPALGDELRARERRWIESGFTLTKADL 361 >gi|148284259|ref|YP_001248349.1| polyA polymerase [Orientia tsutsugamushi str. Boryong] gi|146739698|emb|CAM79508.1| polyA polymerase [Orientia tsutsugamushi str. Boryong] Length = 402 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 134/405 (33%), Positives = 222/405 (54%), Gaps = 18/405 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F ++ +L +L + I+GG++R+ ++ V DIDIAT +LP++VM + K Sbjct: 10 FPSQNIEKLLLMLATPIKSARIIGGSIRNIILGQPVNDIDIATPLLPEQVMDLLKLNNIK 69 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-Y 128 T I +GT+ + +++ F+ITTLR D+ GR+AKV F+ D+ D+ RRDFTINAL Y Sbjct: 70 CYATGIKFGTVTAVIKREKFEITTLRQDVQCYGRHAKVEFSNDYFEDARRRDFTINALSY 129 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + +Q + DY GL DL++R + FIGD+ RI ED LRILRFFRF ++Y ++ID +G Sbjct: 130 SFEQSLLYDYFNGLQDLKDRRVIFIGDSDTRIQEDVLRILRFFRFSSYYA-RSIDQEGYQ 188 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 + K K L ILS ER+ E++K++ + N +V M I I L ++ ++L Sbjct: 189 SCAKHAKSLTILSKERVIQELSKIIISPNAYETLVKMAEINITYYIGLRLK-LNLPVFKN 247 Query: 249 VIEAEQVFEWKIDSLLRFIVLIS---WQDKKSILSMAK-KFSLPREIRYFLISFFNCNFN 304 V + + ++ + VL+S QD K ILS + ++ R+I I F C Sbjct: 248 VTTIAKKKSILPNVIVLYSVLLSSNDVQDLKEILSNLRFSKAMIRKIVRLCIFFSEC--- 304 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 Q ++ I+K + D + + LAL ++ ++ Q + ++I P P Sbjct: 305 QSKNALFLIRKYWLTRVDNI---DDYVNLALLLGCISDEEANMFKQQVYELI----PKLP 357 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++G D+ + G + + +L++ K WINS F L++++L LL+ Sbjct: 358 VSGSDLKELGF-KKQAIQEVLLYLKHAWINSDFTLNKQELIDLLK 401 >gi|320170043|gb|EFW46942.1| tRNA nucleotidyl transferase [Capsaspora owczarzaki ATCC 30864] Length = 516 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 137/446 (30%), Positives = 217/446 (48%), Gaps = 84/446 (18%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII------- 83 IVGGAVRD LMN+ +D+D+AT LPD + +F + +VIPT + +GT+ ++ Sbjct: 50 IVGGAVRDLLMNIQPKDVDLATEALPDVLQHMFEEAGIRVIPTGLKHGTVTVVFERPPSA 109 Query: 84 --------------------------CRKKY--FDITTLRSDLITDGRYAKVVFTRDWKA 115 RK Y +++TTLR D ITDGR+A+V FT DW Sbjct: 110 AEQQQVVDNGTDPVAAAAATTAAAGNPRKLYDQYEVTTLRVDKITDGRHAEVEFTSDWSL 169 Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D+ RRD N++ D G V DY GG+ DL+N I F+G A RI EDYLRILRFFRF+ Sbjct: 170 DAQRRDLRFNSMSIDFNGTVYDYFGGVQDLQNNHIAFVGTADLRIKEDYLRILRFFRFYG 229 Query: 176 HY------GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 G +++ L + L +S+ERIW E +K+L+ ++ + + M G Sbjct: 230 RMCDSLGQGNVSVEPGTLECIAENAPNLSGISAERIWLECSKILQQRSCPHTLEVMTRCG 289 Query: 230 IFKEIFLD-------------VQEISLD---------QLSQVIEAEQVFEWKIDSLLRFI 267 + I L +Q++ + QL A++ E ++R Sbjct: 290 VANIIGLADLHQSVASSEIRLLQQLEMAVRHTTELALQLPPTDVADRWKEHAYIEMIRLS 349 Query: 268 VLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 ++ +D + L++ K S R++ FL+ FN+ ++ P+ L D +++ Sbjct: 350 NIVKNEDSAAELALRWKLSNQQRDLLLFLV------FNRHLVNEPDSAFARRLALD-MLV 402 Query: 327 AKLKI--FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 K+ AL + ++ Q+ F P+FPL+GD + K G+P GK +G + Sbjct: 403 DKVHPDWVAALVFPYVSPQEIYFA----------NIPVFPLSGDVLAKSGVPKGKTMGLV 452 Query: 385 LVHCKQEWINSSFQLSQEDL-HHLLR 409 L +Q W N+ FQ+S+ +L H L+ Sbjct: 453 LASTRQLWKNAGFQVSENELVQHALQ 478 >gi|88608101|ref|YP_506524.1| polyA polymerase family protein [Neorickettsia sennetsu str. Miyayama] gi|88600270|gb|ABD45738.1| polyA polymerase family protein [Neorickettsia sennetsu str. Miyayama] Length = 392 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 133/417 (31%), Positives = 201/417 (48%), Gaps = 54/417 (12%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V+ W DL ++ ++ ++ VGG VRD L+ + DID+ATT+ P+ +R Sbjct: 3 VETSW--TEDLRTLVQIIRNNGGEARFVGGCVRDQLLGRKISDIDLATTLKPEEAIRALK 60 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 IPT + +GT ++ + +ITTLR DL DGR+A V FT WK D+ RRDFT Sbjct: 61 TNGLVTIPTGLKHGTFTVLVNSRPIEITTLRQDLHCDGRHATVSFTDSWKEDAQRRDFTF 120 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NA+Y D +G + DY GL DL+NR +KF+G+ H RI EDYLRILR FRF A + + Sbjct: 121 NAMYIDIEGNIHDYFSGLEDLQNRRLKFVGEPHQRIEEDYLRILRAFRFQASICKTPLSE 180 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--------L 236 + L A K +K + LS ERI E+ KLL N L+ + M I E+ L Sbjct: 181 EILHACTKYRKKISSLSGERIQGEMFKLLSYVNFLSTVFTMQEAKIIDEVLGAKVSFSGL 240 Query: 237 DVQEISLDQ--------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 D ++ L Q L + E +W R+ + Q SILS K+ P Sbjct: 241 DYEKSRLIQDHIAALTLLIRNTENSYNLQWLYS---RWRISKKVQKAISILSEEKEMHCP 297 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNNLTHQDTCF 347 ++ ++ +K ++I LY + K+ + K F+ + N+ Sbjct: 298 KKT----LAKLGNELTRKLINI--------LYAENKLSDIQRKDFMLVTNNS-------- 337 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++P+FP+ G D++ G G ++G L + W SS LS+ +L Sbjct: 338 -----------ERPIFPVMGRDLIPLGY-TGPEIGKKLKQLEYLWRESSCVLSKNEL 382 >gi|254510915|ref|ZP_05122982.1| polyA polymerase family protein [Rhodobacteraceae bacterium KLH11] gi|221534626|gb|EEE37614.1| polyA polymerase family protein [Rhodobacteraceae bacterium KLH11] Length = 384 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 125/409 (30%), Positives = 197/409 (48%), Gaps = 40/409 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + ++ + L G ++ VGG VR++L+ V DIDIAT P V+ + Sbjct: 4 ITEDWITANATQDVCAALTAGGAQALFVGGCVRNALLRAPVSDIDIATDARPGHVIELAQ 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K K IPT I +GT+ I+ ++TT R D+ TDGR A V F+ + D+ RRDFT+ Sbjct: 64 KAGLKPIPTGIDHGTVTIVSGGTPHEVTTFRRDVETDGRRAVVAFSDKVEEDAARRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNID 183 NALYA G ++D + GL DL+ R ++FIG+A RI EDYLR LR+FRF A Y Sbjct: 124 NALYARPDGTILDPLDGLRDLQARRVRFIGEAEKRIREDYLRSLRYFRFHAWYGDADAGF 183 Query: 184 SDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + +I A GL+ LS ER+ +E+ KLL A +P ++ M + G+ ++ + + Sbjct: 184 DADALGAIAANLDGLETLSRERVGAEMLKLLAAPDPAPSVAAMRSAGVLAQLLPGADDTA 243 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-LSMAKKFSLPREIRYFLISFFNC 301 L+ +++ EQ + + R + + K++ LS A+ L R Sbjct: 244 ---LAILVKLEQDAGATPEPIRRLAAVAPVEVAKTLRLSRAQLQRLTR------------ 288 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-----LSDII 356 + ++ + +L Y YG + LH L C L+ L+D + Sbjct: 289 -MRDEAMATTSVAELGYRYGAEG---------GLHETLL----RCAFLEQPWSNDLADAL 334 Query: 357 -HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 H FP+ D++ G +G L + WI S F L +E+L Sbjct: 335 EHGAAASFPIKATDLIPAFT--GPALGAKLAELEARWIASDFALGREEL 381 >gi|58699739|ref|ZP_00374391.1| polynucleotide adenylyltransferase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533745|gb|EAL58092.1| polynucleotide adenylyltransferase [Wolbachia endosymbiont of Drosophila ananassae] Length = 246 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 130/204 (63%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++ V DID+AT +LP++ ++ K IPT +++GTI I ++ F+ Sbjct: 23 LVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLNHGTITAILNQRSFE 82 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + DY GG+ DL+ R + Sbjct: 83 ITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKARRL 142 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 FIG+A RI EDYLRILR FRF A ++ + L K ++ LS ERI EI Sbjct: 143 NFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCKKHSHMIQNLSGERIRDEIL 202 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEI 234 KLLE +P + M + ++I Sbjct: 203 KLLECNDPFPTLKSMQESDVLQKI 226 >gi|195568543|ref|XP_002102273.1| GD19587 [Drosophila simulans] gi|194198200|gb|EDX11776.1| GD19587 [Drosophila simulans] Length = 476 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 134/417 (32%), Positives = 219/417 (52%), Gaps = 38/417 (9%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V+ + + +L ++L+L K + + I GGAVRD LM + +DID+ATT PD++ + Sbjct: 62 VATPEFQSIFTPELNDLLALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPDQMKQ 121 Query: 62 IFSKTRYKVI-PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F K ++I +GTI I K+ F++TTLR D+ TDGR+A+V++T DW+ D+ R Sbjct: 122 MFEKEEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANR 181 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 RD TIN+++ G V DY G +DL+ R + F+G+A RI ED+LRILR+FRF+ Sbjct: 182 RDLTINSMFLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIAS 241 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 E N D L A + KGL +S ERIWSE+ K++ + M+ +F+ I L Sbjct: 242 EENNHDKATLAAIKENAKGLARISGERIWSELQKIVAGNFGPALFLEMHCCNLFEYIGLP 301 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLI 296 +E +LD+ ++ +A F+ +L +L S +D + K + R++ F+ Sbjct: 302 -KEPNLDEFDRLCKALDQFDKPHHPILYLAGMLHSVEDAMEMHKRLKLSAYERDLARFIT 360 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL---- 352 E +K+ Y L+ F L +D F+ Q+L Sbjct: 361 Q--------------EREKVGLHY------TTLRDFQKLCLQKYIQRD--FVEQLLKYSG 398 Query: 353 -----SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + + W KP FP+ G+ + ++G+ G ++G ++ K W +S FQL+ +DL Sbjct: 399 KLELYNQLKSWVKPDFPIRGNALAQHGL-NGVRIGLVMDELKLLWADSDFQLTHDDL 454 >gi|327266138|ref|XP_003217863.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 499 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 200/384 (52%), Gaps = 15/384 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D AT+ P ++ +F T ++I +GTI + F Sbjct: 126 IAGGAVRDLLSGMKPQDVDFATSATPTQMKEMFQATGVRMINNRGERHGTITARLHDENF 185 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR DL+TDGR+A+V FT DW+ D+ RRD TIN+++ G + D+ G +DL+N+ Sbjct: 186 EITTLRIDLVTDGRHAEVEFTTDWEKDAERRDLTINSMFLGLDGTLYDFFNGYDDLKNKK 245 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG-LVASIKAK-KGLKILSSERIWS 207 ++F+G A+ RI EDYLRILR+FRF+ EK D + + +IKA KGL +S ERIW Sbjct: 246 VRFVGQANQRIQEDYLRILRYFRFYGRIAEKPGDHEPKTLEAIKANAKGLAGISGERIWM 305 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+L + + I MY + I L V +L + V + Q K ++L Sbjct: 306 ELKKILVGNHANHLIRLMYELDVANYIGLPVNG-NLQEFDTVCKNVQNLFPKPMTVL--T 362 Query: 268 VLISWQDKKSILSMAKKFSL-PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 L+ D S L + K S + + FL+ + P ++ + + Sbjct: 363 SLLKVPDDISKLDLRLKISKDEKSLGLFLLKHRRDLVKAIDTTEPLKPYQDFIIDSREVD 422 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 A +I L Y +L ++ W P FP++G D+ + GI GK++G +L Sbjct: 423 ATSRICELLKYQGEEG--------LLHEMQQWSVPTFPVSGHDIRRTGISSGKEIGVLLQ 474 Query: 387 HCKQEWINSSFQLSQEDLHHLLRK 410 + +W S +++ +E+L ++K Sbjct: 475 ELRDQWKKSGYRMEKEELLSYVKK 498 >gi|294675746|ref|YP_003576361.1| CCA-adding enzyme [Rhodobacter capsulatus SB 1003] gi|294474566|gb|ADE83954.1| CCA-adding enzyme [Rhodobacter capsulatus SB 1003] Length = 384 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 128/400 (32%), Positives = 197/400 (49%), Gaps = 31/400 (7%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + +L++L+ G ++ +VGG VR++ + V DIDIAT P+RVM + Sbjct: 7 WLTAGHVQKVLAMLSDGGHQALLVGGCVRNAALFQPVSDIDIATDAPPERVMALAKAAGL 66 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K +PT I +GT+ ++ ++TT R D+ T GR+A V F+ D + D+ RRDFT+NALY Sbjct: 67 KPVPTGIEHGTVTVVADHVGHEVTTFRRDVETFGRHAIVAFSTDLREDAARRDFTMNALY 126 Query: 129 ADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSD 185 A G VID +G GL DL R ++F+GD RI EDYLRILRFFRF A YG ++ +D++ Sbjct: 127 ARADGTVIDPLGEGLADLSARRLRFVGDPAQRITEDYLRILRFFRFTAWYGDPDQGMDAE 186 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A G++ LS ERI E+ KLL A +P A+ M G+ ++ + L Sbjct: 187 GLAACAAFSAGIETLSRERIGHEMRKLLSAPDPAPAVAAMAASGVLAQVLPGAEARFLAP 246 Query: 246 LSQVIEAEQVFEWKIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 L + E + + LR + + +D L ++K + R + + + + Sbjct: 247 LVHL-------EGSVPADPLRRLACLGGEDPADRLRLSKAEA--RRLERLREALGDPGSD 297 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +L Y YG + L I A + + + FP Sbjct: 298 ---------AELGYRYGAETGRDALLIRCASLGQEIPESSR-------NRVAFGAAQRFP 341 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 +T D++ G +G L ++ WI S F LS+E L Sbjct: 342 VTAADLMPKHQ--GPALGAKLKELERRWIASGFSLSREAL 379 >gi|15603895|ref|NP_220410.1| poly(A) polymerase (pcnB) [Rickettsia prowazekii str. Madrid E] gi|3860586|emb|CAA14487.1| POLY(A) POLYMERASE (pcnB) [Rickettsia prowazekii] gi|292571611|gb|ADE29526.1| Poly(A) polymerase [Rickettsia prowazekii Rp22] Length = 387 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 101/219 (46%), Positives = 142/219 (64%), Gaps = 3/219 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ILSLLNK + +S ++GG VRD+L++ DIDIAT ++P + I S K+IPT + + Sbjct: 18 ILSLLNK-KGQSRLIGGCVRDALLDKDTYDIDIATNLMPGEAINILSSANIKIIPTGLKF 76 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVI 136 GTI I + F+ITTLR D+ +GR+AKV+F++D+ D+ RRDFTINAL Y + ++ Sbjct: 77 GTITAILNNEKFEITTLRKDIECNGRHAKVIFSKDFAEDAARRDFTINALSYCPFKNEIY 136 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 DY G DL+ + FIG A +RI EDYLRILRFFRF ++Y + +D + A K G Sbjct: 137 DYFDGFKDLQRAKVVFIGKAFNRIKEDYLRILRFFRFSSYYANQ-LDYESFKACDTLKYG 195 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 LK LS ERI SEI+K++ +K + M+ GI + IF Sbjct: 196 LKTLSRERIKSEIDKIIVSKRATQILEAMFKIGILELIF 234 >gi|317418942|emb|CBN80980.1| 'tRNA-nucleotidyltransferase 1, mitochondrial' [Dicentrarchus labrax] Length = 427 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 121/405 (29%), Positives = 209/405 (51%), Gaps = 28/405 (6%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F+D L + + K + + I GGAVRD L +D+D ATT P+ + R+F + Sbjct: 35 FNDG-LNGLAEVFEKHQHELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKRMFQSAGIR 93 Query: 70 VIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I +GTI + F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 94 MINNKGEKHGTITARLHNENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 153 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--SDG 186 G + DY G +DL+NR ++F+G A RI EDYLRILR+FRF+ + D + Sbjct: 154 LGLDGTLYDYFKGYDDLQNRKVRFVGSAEQRIQEDYLRILRYFRFYGRVALEPDDHEPET 213 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + +GL +S ERIW EI K++ + + + MY+ + Q I + Sbjct: 214 LAAIRENGRGLAAISGERIWVEIKKMVVGNHAAHLLELMYSLEL-------AQYIGIPPD 266 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLIS--WQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 V E ++V++ D + + +++ + + + M + + RE + ++ F F Sbjct: 267 GNVEEMKRVWQNAKDHSPKPMTILAALFHCPEEVEKMDLRLKVSREEKN--LALFLVKFR 324 Query: 305 ---QKTLSIPEIKKLF--YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 +K+ P+ K F ++ ++ + ++ K+ L Y ++L ++ W Sbjct: 325 RELRKSQDDPDSLKPFTDFIIDNRELDSQSKVCELLKYQGEE--------KLLKELCRWS 376 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P FP+ G D+ + GI GK++G L + W S +Q+ +++L Sbjct: 377 TPRFPVNGHDLRRMGITSGKEIGATLQKLRDIWKTSRYQMDKDEL 421 >gi|84514898|ref|ZP_01002261.1| polyA polymerase family protein [Loktanella vestfoldensis SKA53] gi|84511057|gb|EAQ07511.1| polyA polymerase family protein [Loktanella vestfoldensis SKA53] Length = 380 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 138/259 (53%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W D + LL ++ VGG VR++L+ V D+D+ T PD V +I Sbjct: 4 VTGAWLADPAAQLVCRLLTDAGYQAWFVGGCVRNALLGAPVADLDLTTDARPDGVTQIAK 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 KVIPT I +GT+ II + F++TT R D+ TDGR A V F D+ RRDFT+ Sbjct: 64 AAGLKVIPTGIDHGTVTIIAKNTPFEVTTFRRDVATDGRRAVVAFADTMLEDARRRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NALYA G V+D +GGL DL R ++FI DA RI EDYLRILRFFRF A YG ID Sbjct: 124 NALYAGPDGMVVDPLGGLPDLFARRVRFIEDAEQRIREDYLRILRFFRFHAWYGADGIDP 183 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D L A GL LS ER+ +E+ KLL A +P A+ M G+ +I L Sbjct: 184 DALAACAANTDGLASLSRERVTAEMLKLLAAPDPAPAVASMAAAGVLGQILPGADAAPLA 243 Query: 245 QLSQVIEAEQVFEWKIDSL 263 L + A + I L Sbjct: 244 VLVHIEAAVGLLPSPIRRL 262 >gi|221131830|ref|XP_002154568.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 436 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 128/402 (31%), Positives = 216/402 (53%), Gaps = 23/402 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D++ + ++ K + IVGGAVRD L+ +DID++TT P +++ +FS+ + + I Sbjct: 38 DDDVVGLCNIFIKKGFEIRIVGGAVRDVLLGNPAKDIDLSTTATPQQMVEVFSENKIRFI 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T +++GT+ + F +TTLR D+ TDGR+AKV FT DWK D+ RRD T N++ D Sbjct: 98 ETGLAHGTLTAHYNGRDFQVTTLRYDIETDGRHAKVEFTNDWKLDAERRDLTFNSMSMDV 157 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS--DGLVA 189 + DY G NDL+ ++F+G+ +RI EDYLRILR+FRF+ NI S + + Sbjct: 158 NAVLYDYFNGENDLKQGVVRFVGNVENRIREDYLRILRYFRFYGRIA-PNIHSHDEKTLN 216 Query: 190 SIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 +IK +GLK L+ ERIW E++K+L + ++ M + + I I L+ + Sbjct: 217 TIKTLSEGLKNLAVERIWLEVSKILTGPLAPHLLLLMQQLNVTESIGF---PIVLEDNLK 273 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNC-NFN 304 + E +D +++ +++K + K+ L + R F+IS + N++ Sbjct: 274 LFETVWTQTRNVDVSPVTLLVTLLENEKIMEDFGSKWKLSNKERIMGLFIISHRSLRNYS 333 Query: 305 QKTLSIP--EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +K P ++ L GD + +++ L ++ +T ++ W P+ Sbjct: 334 EKCPLKPYQDLIVLNSNKGDASVRERVRQ-LMFYHGKITES---------FELDKWDIPI 383 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+TG D+ GI G + G IL+ K+ W+NS + S+EDL Sbjct: 384 FPITGLDLKNCGIKQGPEFGKILIKLKKIWMNSYYCDSKEDL 425 >gi|289741975|gb|ADD19735.1| tRNA nucleotidyltransferase/poly polymerase A [Glossina morsitans morsitans] Length = 474 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 212/396 (53%), Gaps = 19/396 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-P 72 +L ++S+ +K + + GGAVRD LM ++ +D+D ATT P+++ +F+ + ++I P Sbjct: 66 ELKTLVSIFSKYNYELRVAGGAVRDILMEITPKDVDFATTATPEQMKEMFTLEKIRMINP 125 Query: 73 TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GTI + I K+ F++TTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 126 KGEKHGTITVRIGDKENFEVTTLRIDVVTDGRHAEVQFTTDWQLDANRRDLTINSMFLGF 185 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VAS 190 G + DY G DL+ R +KF+GDA+ RI ED+LRILR+FRF+ + D L + + Sbjct: 186 DGTLYDYFYGYEDLQQRRVKFVGDANTRIKEDFLRILRYFRFYGRIAPEADRHDELTLKA 245 Query: 191 IKAKK-GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I+A GL +S ERIW E+ K+L ++ M N G+ L ++ L + ++ Sbjct: 246 IRANAHGLAKISGERIWGELQKMLLGNYSEEIMLEMINSGLVVYCGLPLRPNVL-EFKRL 304 Query: 250 IEAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 A + FE +L I L+ S +D + K + R++ +F+ Q+ Sbjct: 305 CLALKDFEKPHKPILFMISLVHSVEDAIKMHERLKFSAFERDLAFFI--------TQQRE 356 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E Y + A ++ H+ ++ ++ W+ P FP+ G+ Sbjct: 357 KVDECYVSLRDYQKLCLQAYIRRDFVEELLKYKHKR-----ELYDNLRSWEVPPFPVNGN 411 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + P +K+G +L K W +++FQLS+E+L Sbjct: 412 ILKDRASIPTRKIGLVLAQLKLIWADNNFQLSREEL 447 >gi|163742637|ref|ZP_02150023.1| polyA polymerase family protein [Phaeobacter gallaeciensis 2.10] gi|161384222|gb|EDQ08605.1| polyA polymerase family protein [Phaeobacter gallaeciensis 2.10] Length = 384 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/416 (32%), Positives = 208/416 (50%), Gaps = 43/416 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +Q KW D + ++ +L KG + VGG VR++L+ + V D+D++T + P RVM + Sbjct: 4 IQAKWLEDPAVQHVCDVLTKGGAEVYFVGGCVRNALLGVPVSDLDLSTNVPPQRVMALAE 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + K IPT I +GT+ ++ R ++ITT R D++TDGR A V F+ + D+ RRDFT+ Sbjct: 64 EAGIKAIPTGIDHGTVTLVYRGTPYEITTFRRDVVTDGRRAVVAFSDRIEEDAARRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G ++D + GL DLR R ++FIG + RI EDYLR LR+FRF + YG + Sbjct: 124 NALYARPDGGLVDPLNGLPDLRARLVRFIGSSAQRIREDYLRSLRYFRFHSWYGNPDAGF 183 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A + G+ LS ER+ SE+ KLL A +P AI M G+ I + + Sbjct: 184 DPDALSAIAENLDGIGSLSRERVGSEVLKLLAAPDPAPAIAVMRQVGLLSLILPGSDDRA 243 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVL---ISWQDKKSILSMAKKFSLPREIRYFLISFF 299 L L +E + E L R L SW+ L ++K + ++R + Sbjct: 244 LGPLVH-LEGGRPAE----PLCRLAALGGDASWE----ALRLSKTQAA--DVRLLRAAAE 292 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + +L Y +G + + AL +T + ++I Sbjct: 293 GTDGP---------AELAYHHGVSTARNVMLLRSALLEMPITP-------DLEAEITKGA 336 Query: 360 KPLFPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +FPL+ D++ P G +G L +++WI S F L D LL++L+ Sbjct: 337 GAVFPLSAKDLM-----PDLQGAALGAALKSLQKDWIRSGFML---DRDALLKRLL 384 >gi|329114174|ref|ZP_08242936.1| CCA-adding enzyme [Acetobacter pomorum DM001] gi|326696250|gb|EGE47929.1| CCA-adding enzyme [Acetobacter pomorum DM001] Length = 413 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 181/362 (50%), Gaps = 17/362 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD ++ ++ D+D+A P+ VM+ V+PT +++GT+ + ++ Sbjct: 45 LVGGVVRDLMVGRAIADVDLAVPQPPEEVMQGLKAQGITVVPTGLAHGTVTAVIDSAPYE 104 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D+ TDGR+A V +T +W+ D+ RRDFTINA+ D G V DY GG DL T+ Sbjct: 105 ITTLRRDVETDGRHAVVCWTDNWQEDAARRDFTINAMSCDSTGAVHDYFGGQQDLAEGTV 164 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 +F+GDA RI ED LRILRFFRF+ YG+ D+ + A L LS ER+WSE+ Sbjct: 165 RFVGDATLRIQEDALRILRFFRFWGRYGQGRADAQAMQAITAQAALLNGLSVERVWSELK 224 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 ++L + + M GI + + + L ++ + + + Sbjct: 225 RILAGPKAQDVVYLMQQAGILPVLLPEGANVPL--------FARLMAFNPPADALLRLAA 276 Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330 +K + ++ KFS R + + +S +++ L ++ A+ Sbjct: 277 LVPNKSADMARRLKFSRAEAARLKAMQAEPVPLPK--MSDAQLRHLLADTPPDILAARSW 334 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 + A + + L + + Q L+ + + P+FP+ G D+++ G PG VG +L + Sbjct: 335 LHQARYSDVLGEE----LRQRLARL---EIPVFPIAGRDLLEAGCQPGPHVGQVLKDVRN 387 Query: 391 EW 392 W Sbjct: 388 WW 389 >gi|163737967|ref|ZP_02145383.1| Polynucleotide adenylyltransferase region [Phaeobacter gallaeciensis BS107] gi|161388583|gb|EDQ12936.1| Polynucleotide adenylyltransferase region [Phaeobacter gallaeciensis BS107] Length = 384 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 138/420 (32%), Positives = 202/420 (48%), Gaps = 51/420 (12%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V+ KW D + ++ +L KG + VGG VR++L+ + V D+D++T + P RVM + Sbjct: 4 VKAKWLEDPAVQHVCEVLTKGGAEVYFVGGCVRNALLGVPVSDLDLSTNVAPQRVMALAE 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + K IPT I +GT+ ++ R ++ITT R D+ TDGR A V F + D+ RRDFT+ Sbjct: 64 EAGIKAIPTGIDHGTVTLVYRGTPYEITTFRRDVATDGRRAVVAFADRIEEDAARRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G ++D + GL DL R ++FIG A RI EDYLR LR+FRF A YG + Sbjct: 124 NALYARPDGVLVDPLNGLPDLHARAVRFIGSAAQRIREDYLRSLRYFRFHAWYGNSDAGF 183 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A + G+ LS ER+ SE+ KLL A +P AI M G+ I + + Sbjct: 184 DPDALSAIAENLDGIGRLSRERVGSEVLKLLAAPDPAPAIAVMRQVGLLSLILPGSDDRA 243 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVL---ISWQDKKSILSMAKKFSLPREIRYFLISFF 299 L L I E + D L R L W+ + S A L L + Sbjct: 244 LGPL---IHLEG--DISADPLCRLAALGGDAPWEALRLSKSQAADVRL-------LRAGA 291 Query: 300 NCNFNQKTLSIPEIKKLFYLYG----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 TL+ Y +G VM+ + +F + V ++I Sbjct: 292 EGTDGPATLA--------YHHGVSTARNVMLLRSALF-----------EAPIAPDVETEI 332 Query: 356 IHWKKPLFPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +FPL+ D++ P G +G L +++WI S F L D LL++L+ Sbjct: 333 TKGAAAVFPLSAKDLM-----PDLQGPALGAALKTLQKDWIRSGFML---DRDALLKRLL 384 >gi|119385302|ref|YP_916358.1| polynucleotide adenylyltransferase region [Paracoccus denitrificans PD1222] gi|119375069|gb|ABL70662.1| Polynucleotide adenylyltransferase region [Paracoccus denitrificans PD1222] Length = 388 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/256 (38%), Positives = 151/256 (58%), Gaps = 9/256 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGGAVR++L+ V D+DI+T+ P+ +R+ + +PT I +GT+ +I + F+ Sbjct: 30 IVGGAVRNALLGEPVADVDISTSARPEDTVRLAEAAGLRSVPTGIEHGTVTVIADGRGFE 89 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 +T+ R D+ T GR A V ++ + D+ RRDFT+NALYA G+V+D VGGL DL R + Sbjct: 90 VTSFRRDVETFGRRAVVAYSDRIEDDAHRRDFTMNALYATASGEVLDPVGGLPDLAARRL 149 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 +F+G+ H RI EDYLRILRFFR A YG + + L A + ++GL +S ERI EI Sbjct: 150 RFVGNPHARIAEDYLRILRFFRLLAWYG-REAELQALAACRELREGLTGISRERIGHEIR 208 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL---LRFI 267 KLL+A +P A+ M G+ + L L +E E+ E+ +L R + Sbjct: 209 KLLDAPDPSRAVALMAEAGVLPLVLPGADAGDLPDL---VEVER--EYGTGALPCWPRRL 263 Query: 268 VLISWQDKKSILSMAK 283 L++ QD + L +++ Sbjct: 264 ALLAPQDAEGALRLSR 279 >gi|324511430|gb|ADY44759.1| tRNA-nucleotidyltransferase 1 [Ascaris suum] Length = 494 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 128/395 (32%), Positives = 203/395 (51%), Gaps = 24/395 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICR---K 86 + GGAVRD LM L DID A+ P ++ +F++ +++ +GTI CR K Sbjct: 73 MAGGAVRDLLMGLRPADIDFASDATPSQMKELFTREGIRMLNKNGEEHGTI--TCRIDDK 130 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + F+ITTLR D++ DGR AKV FT DW+ D+ RRD TIN+L+ + G VIDY GG+ DLR Sbjct: 131 ENFEITTLRIDVVCDGRRAKVEFTTDWQLDANRRDLTINSLFLELDGTVIDYFGGIEDLR 190 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFF---AHYGEKNIDSDGLVASIKAKKGLKILSSE 203 R + F+GDA RI EDYLRILR+FRFF A G+ + + L A I K+GL +S E Sbjct: 191 ARRVAFVGDATQRIQEDYLRILRYFRFFGRIAKSGDAH-EQTTLDAIINNKQGLMNISGE 249 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 RIWSE+ K+ + + + M + + + L + V ++F + D Sbjct: 250 RIWSELKKICVGRFGGDVLTTMVSRCGLASL------LGLPEDCDVATCREIFNYNSDRS 303 Query: 264 LRFIVLIS--WQDKKSILSMAKKFSLP---REIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 L + ++S +++++ I K+ L + + F++ + S K L Sbjct: 304 LEPMTVLSALFKNQQDIDVFHKRCKLSNAEKSLAEFIVEKRD-EARSNIDSTKYFKDLIL 362 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 Y K KI L C +++ +I WK P FP++G D++ G+ G Sbjct: 363 DYEKAPGRDKKKINGRDMVRELAKY-VCASAEIIEEIGVWKMPEFPVSGKDLIGTGVKTG 421 Query: 379 KKVGNILVHCKQEWINSSFQLSQED-LHHLLRKLI 412 + +L H + W S ++ +++ L H+ +L+ Sbjct: 422 PIMRRVLTHLFELWKKSEYKAERDELLSHITPELV 456 >gi|332029561|gb|EGI69450.1| tRNA-nucleotidyltransferase 1, mitochondrial [Acromyrmex echinatior] Length = 463 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 214/409 (52%), Gaps = 20/409 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI- 71 +L + SL K K I GGAVRD LM +D+D AT P ++ +F+ ++I Sbjct: 48 PELEKLASLFKKYSYKLRIAGGAVRDILMGKQPKDLDFATDATPQQMKDMFTSEEIRMIN 107 Query: 72 PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI I + F++TTLR D++T+GR+A+V FT+DWK D+ RRD TIN+++ D Sbjct: 108 EKGEKHGTITARINDMENFEVTTLRIDVLTNGRHAQVEFTKDWKLDANRRDLTINSMFLD 167 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-YGEKNIDSDGLVA 189 G+V DY G +DL+ + + F+G A RI EDYLRILR+FRF+ N + + Sbjct: 168 LDGRVYDYFYGYDDLKKKRVVFVGKASIRIQEDYLRILRYFRFYGRIMDSPNQHDEATII 227 Query: 190 SIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 ++K GL+ +S ERIWSE NK+L L + + G + I L +E ++ + Sbjct: 228 ALKENIGGLEQISGERIWSEWNKILSGTFALELTLKLLECGSSRYIGLP-EEPDVENFRK 286 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCNFNQ 305 + E Q + + + ++ +D+ ++ + ++ L R++ FL+ C + Sbjct: 287 IYERAQSNNVTLKPISLIVSML--KDEYEVIKLHERLKLSNSDRDLAIFLVQNRECKPCE 344 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 K L Y V++ ++K + L + +Q+L + W P FP+ Sbjct: 345 KPLKP---------YQQLVLLQQIKRYDVLKEDVKELLRYRGAIQLLDEFEQWVIPKFPI 395 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 G+ ++KY + K +G++L+ K+ WI++ F+L+ E L + +++ Sbjct: 396 NGNMLIKY-VTMKKMIGSVLIELKRIWIDTDFKLTNEQLMEHVSSIVSE 443 >gi|307199467|gb|EFN80080.1| tRNA-nucleotidyltransferase 1, mitochondrial [Harpegnathos saltator] Length = 433 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/401 (31%), Positives = 213/401 (53%), Gaps = 22/401 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S+L +++L K + + I GGAVRD LMN +D+D ATT PD++ +F K +++ Sbjct: 29 SELNILVNLFQKYDYELRIAGGAVRDILMNKYPKDLDFATTATPDQMKEMFEKEEIRILN 88 Query: 73 T-SISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI I K+ F++TTLR D ITDGR+A+V FT+DWK D+ RRD TIN+++ D Sbjct: 89 VKGEKHGTITARINDKENFEVTTLRIDNITDGRHAEVEFTKDWKLDACRRDLTINSMFLD 148 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 GK+ DY G +DL+N+ + F+G+ + RI EDYLRILR+FRF+ + D A+ Sbjct: 149 FNGKLYDYFYGYDDLKNKKVIFVGNVNTRICEDYLRILRYFRFYGKIMDSPDQHDE--AT 206 Query: 191 IKAKK----GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 IKA K GL+++S ERIWSE K+L K L + M G K + L + +++ Sbjct: 207 IKAIKDNVNGLQLISGERIWSEWYKILTGKFALELTLKMLECGCGKYMGLP-ENPNIENF 265 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCNF 303 V + + + + ++ +D++ ++ + + L R++ FL+ + C Sbjct: 266 QIVCRRASSNDVALKPISMIVPML--KDEQEVMDVHGRLKLSNADRDLALFLVRYRECTH 323 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 + ++L + + ++ L +Q +++L + W P F Sbjct: 324 IPCERPLKPYQQLVFTQ----QTNRYDVYREYVKEILKYQGA---MELLDEFEKWVIPKF 376 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P+ G ++K +P K +G ++ K+ WIN F+ + +L Sbjct: 377 PING-IMLKDLVPHPKMIGKVITELKKIWINDDFKNTNSEL 416 >gi|268554488|ref|XP_002635231.1| Hypothetical protein CBG11474 [Caenorhabditis briggsae] Length = 462 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 126/402 (31%), Positives = 207/402 (51%), Gaps = 25/402 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PT 73 L+ + L K + I GGAVRD LMN+ D+D A+T P ++ +F + +++ Sbjct: 53 LLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATPTQMKEMFEQENIRMLHKR 112 Query: 74 SISYGTIKIICR---KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI CR K+ F+ITTLR D++ DGR AKV +T DW+ D+ RRD TIN+L+ D Sbjct: 113 GEEHGTI--TCRIDEKENFEITTLRIDVVCDGRRAKVEYTTDWQLDANRRDLTINSLFLD 170 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-YGEKNIDSDGLVA 189 G V+DY GG+ D+ R + F+GDA RI EDYLRILR+FRFF + ++D + A Sbjct: 171 LHGNVVDYFGGIGDIETRRVAFVGDARQRIQEDYLRILRYFRFFGRISNSPDHEADTIQA 230 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I K G+ +S+ERIW+E+ K++ + + + M ++ +E ++ + Q+ Sbjct: 231 IIDNKDGMSGISAERIWTELKKIVIGRMADDVVKAMIEQCELQKYLGLPEECNITRFRQI 290 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY---FLISFFNC---NF 303 + F ++ + L + K I K L + R+ F++ N Sbjct: 291 FKR---FPKSVEPMTMVASLC--EGVKQIAQFHKITKLSNDERFLGEFILREREAALENM 345 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNNLTHQDTCFILQVLSDIIHWKKPL 362 N I + L G + + +L++ L L + L + +LQ + P Sbjct: 346 NNDDWWIDRMVDLEVRPGHENLPDRLRLRLVQLARSVLADDERIEMLQKFT------PPQ 399 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+TG D+++ G+ G V N+L++ + W S F ++E+L Sbjct: 400 FPITGRDLMEAGVRKGPGVKNVLIYLYELWKTSRFTSTKEEL 441 >gi|77464784|ref|YP_354288.1| Poly A polymerase family protein [Rhodobacter sphaeroides 2.4.1] gi|77389202|gb|ABA80387.1| Poly A polymerase family protein [Rhodobacter sphaeroides 2.4.1] Length = 380 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 101/267 (37%), Positives = 153/267 (57%), Gaps = 7/267 (2%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + ++L + ++ VGG VR++L+ +V DID+AT +P V + + Sbjct: 3 ISGDWLVRPTTQRLCAVLTEAGHRALFVGGCVRNALLGRAVSDIDLATDAVPAAVSALAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG ++ + Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + + Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPARSVASMECAGVLAVVLPGAEARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVL 269 L L +E + +W LLR L Sbjct: 243 LPVLVH-LEEGRAPDW----LLRLASL 264 >gi|221640701|ref|YP_002526963.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides KD131] gi|221161482|gb|ACM02462.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides KD131] Length = 380 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 101/267 (37%), Positives = 153/267 (57%), Gaps = 7/267 (2%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + ++L + ++ VGG VR++L+ +V DID+AT +P V + + Sbjct: 3 ISGDWLVQPATQRLCAVLAEAGHRALFVGGCVRNALLGRAVSDIDLATDAVPAAVSALAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG ++ + Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + + Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPAPSVASMECAGVLAVVLPGAEARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVL 269 L L +E + +W LLR L Sbjct: 243 LPVLVH-LEEGRAPDW----LLRLASL 264 >gi|309360831|emb|CAP30493.2| hypothetical protein CBG_11474 [Caenorhabditis briggsae AF16] Length = 433 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 202/386 (52%), Gaps = 25/386 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICR---K 86 I GGAVRD LMN+ D+D A+T P ++ +F + +++ +GTI CR K Sbjct: 40 IAGGAVRDLLMNIRPADVDFASTATPTQMKEMFEQENIRMLHKRGEEHGTI--TCRIDEK 97 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + F+ITTLR D++ DGR AKV +T DW+ D+ RRD TIN+L+ D G V+DY GG+ D+ Sbjct: 98 ENFEITTLRIDVVCDGRRAKVEYTTDWQLDANRRDLTINSLFLDLHGNVVDYFGGIGDIE 157 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAH-YGEKNIDSDGLVASIKAKKGLKILSSERI 205 R + F+GDA RI EDYLRILR+FRFF + ++D + A I K G+ +S+ERI Sbjct: 158 TRRVAFVGDARQRIQEDYLRILRYFRFFGRISNSPDHEADTIQAIIDNKDGMSGISAERI 217 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W+E+ K++ + + + M ++ +E ++ + Q+ + F ++ + Sbjct: 218 WTELKKIVIGRMADDVVKAMIEQCELQKYLGLPEECNITRFRQIFKR---FPKSVEPMT- 273 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRY---FLISFFNC---NFNQKTLSIPEIKKLFYL 319 +V + K I K L + R+ F++ N N I + L Sbjct: 274 -MVASLCEGVKQIAQFHKITKLSNDERFLGEFILREREAALENMNNDDWWIDRMVDLEVR 332 Query: 320 YGDKVMIAKLKIFLA-LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 G + + +L++ L L + L + +LQ + P FP+TG D+++ G+ G Sbjct: 333 PGHENLPDRLRLRLVQLARSVLADDERIEMLQ------KFTPPQFPITGRDLMEAGVRKG 386 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDL 404 V N+L++ + W S F ++E+L Sbjct: 387 PGVKNVLIYLYELWKTSRFTSTKEEL 412 >gi|254475356|ref|ZP_05088742.1| polyA polymerase family protein [Ruegeria sp. R11] gi|214029599|gb|EEB70434.1| polyA polymerase family protein [Ruegeria sp. R11] Length = 383 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 126/408 (30%), Positives = 198/408 (48%), Gaps = 34/408 (8%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +++++ W D D ++ +L G VGG VR++L+ D+D+ T + P+RV+ Sbjct: 1 MTVLRTDWLEDPDTQHVCKVLKDGGADVYFVGGCVRNALLGAGASDLDLCTNMRPERVID 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + IPT I +GT+ ++ + ++ITT R D+ TDGR A V F+ K D+ RRD Sbjct: 61 VAGAAGIRAIPTGIDHGTVTLVHKSVPYEITTFRRDVATDGRRAVVAFSDCIKEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYA G+V+D + GL DL R ++FIG A +RI EDYLR LR+FRF A YG + Sbjct: 121 FTMNALYARPDGEVVDPLDGLPDLVARRVRFIGTAENRIREDYLRSLRYFRFHAWYGNPD 180 Query: 182 I--DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + D D L A G+ LS ER+ E+ KLL A +P A+ M G+ I Sbjct: 181 LGFDPDALSAIAGNLDGIPSLSRERVGQELVKLLAAPDPAPAVAVMRQIGLLSVILPGSD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + +L L +EA E +R + + +D + L ++K + ++ Sbjct: 241 DRALAPLIH-LEAGMPPEP-----MRRLAALGGEDPRDALRLSKA-------QANMVQLL 287 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 T L Y+Y V + + AL L + +++ Sbjct: 288 RTEATGSTAP----AALAYMYDQSVARDAMLLRSALLEMPLPP-------MLETELNAGA 336 Query: 360 KPLFPLTGDDVVKYGIPP---GKKVGNILVHCKQEWINSSFQLSQEDL 404 + +FPLT D++ P G +G L K +WI S F L ++ L Sbjct: 337 QAVFPLTAQDLM-----PDLQGPALGVALKRLKSDWIASGFSLDKDTL 379 >gi|56694954|ref|YP_165299.1| polyA polymerase family protein [Ruegeria pomeroyi DSS-3] gi|56676691|gb|AAV93357.1| polyA polymerase family protein [Ruegeria pomeroyi DSS-3] Length = 384 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 137/244 (56%), Gaps = 2/244 (0%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + + L +G ++ VGG VR++L+ V DIDI T P+RVM + + Sbjct: 4 IDEAWLTEPATQQVCRALTEGGAQALFVGGCVRNALLGAPVSDIDITTDAHPERVMALAA 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I++GT+ ++ ++TT R D+ TDGR A V F+ D+ RRDFT+ Sbjct: 64 AAGIKAVPTGIAHGTVTLVANSIPHEVTTFRRDVETDGRRAVVAFSDSIHEDAARRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G V+D + GL DL+ R ++FIGDA RI EDYLR LR+FRF A YG E Sbjct: 124 NALYARPDGTVLDPLDGLPDLQARRVRFIGDATDRIREDYLRSLRYFRFHAWYGDAEAGF 183 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++ L A GL LS ER+ +E+ KL A +P ++ M G+ ++ + + Sbjct: 184 DAEALAAIAGNLDGLSRLSRERVGAEMLKLFAAPDPAPSVAAMRAAGVLAQLLPGADDRA 243 Query: 243 LDQL 246 L L Sbjct: 244 LAPL 247 >gi|117645344|emb|CAL38138.1| hypothetical protein [synthetic construct] Length = 414 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 193/384 (50%), Gaps = 35/384 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+L P NA SL++ +V + F K +LL Sbjct: 241 ELKKIL-VGLPANA--------------------SLEEFDKVSKNVDGFSPKPVTLL--A 277 Query: 268 VLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 L QD + L + K + + + F++ S P ++ + Sbjct: 278 SLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPD 337 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 338 ATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQ 389 Query: 387 HCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 390 QLREQWKKSGYQMEKDELLSYIKK 413 >gi|21740087|emb|CAD39059.1| hypothetical protein [Homo sapiens] gi|117646864|emb|CAL37547.1| hypothetical protein [synthetic construct] gi|119584291|gb|EAW63887.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_c [Homo sapiens] Length = 414 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 193/384 (50%), Gaps = 35/384 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+L P NA SL++ +V + F K +LL Sbjct: 241 ELKKIL-VGLPANA--------------------SLEEFDKVSKNVDGFSPKPVTLL--A 277 Query: 268 VLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 L QD + L + K + + + F++ S P ++ + Sbjct: 278 SLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPD 337 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 338 ATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQ 389 Query: 387 HCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 390 QLREQWKKSGYQMEKDELLSYIKK 413 >gi|46204034|ref|ZP_00050593.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum magnetotacticum MS-1] Length = 311 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 108/263 (41%), Positives = 152/263 (57%), Gaps = 7/263 (2%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H D + +L +GE+ +VGG VRD+L+ V DID+ TT+ P+ VM Sbjct: 17 HLLARDGVRACLAALRVEGEETR-LVGGCVRDALLGQIVSDIDLTTTLRPEAVMDRARAA 75 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 K +PT +++GT+ ++ ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINA Sbjct: 76 GIKAVPTGVAHGTVTLVVDGVPHEVTTLREDVETDGRHAVVRFGRDFARDAERRDFTINA 135 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 L D QG + D GG+ DL ++FIGDA RI ED LR+LRFFRF A YG D++G Sbjct: 136 LSLDGQGGLHDTTGGVADLAAGRVRFIGDAATRIREDALRLLRFFRFHARYGRGAPDAEG 195 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A+I A+ GL LS ER+ +E KLL A + A+ + G+ I V E L +L Sbjct: 196 LAAAIAARDGLDRLSRERVRAEFLKLLLAPRVVAAVTILSETGLLPRIVGGVGE--LGRL 253 Query: 247 SQVIEAEQVFEWKIDSLLRFIVL 269 ++ AE ++DS +R L Sbjct: 254 ARCAAAEP----RLDSTVRLAAL 272 >gi|126738475|ref|ZP_01754180.1| polyA polymerase family protein [Roseobacter sp. SK209-2-6] gi|126720274|gb|EBA16980.1| polyA polymerase family protein [Roseobacter sp. SK209-2-6] Length = 384 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 132/217 (60%), Gaps = 2/217 (0%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR++LM + V DIDIAT P+ V+ + K IPT I +GT+ ++ ++ Sbjct: 31 VGGCVRNALMGVPVSDIDIATDATPEEVLELARAAGIKAIPTGIDHGTVTLVEGHIPHEV 90 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 TT R D+ TDGR A V F++D D+ RRDFT+NALYA G ++D + GL DL +R ++ Sbjct: 91 TTFRRDVATDGRRAVVAFSKDIAEDAARRDFTMNALYARPDGALVDPLKGLPDLEHRRVR 150 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 FIGDA RI ED+LR LR+FRF A YG + D + L A + +GL LS ERI SE+ Sbjct: 151 FIGDAGARIREDHLRTLRYFRFHAWYGNHDAGFDPEALAAIAENLEGLAKLSKERITSEL 210 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 KLL A++P A+ M G+ +I + +L L Sbjct: 211 LKLLAAEDPAPALAIMRQTGLLGQILPGADDRALAPL 247 >gi|270009743|gb|EFA06191.1| hypothetical protein TcasGA2_TC009040 [Tribolium castaneum] Length = 425 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 130/407 (31%), Positives = 209/407 (51%), Gaps = 30/407 (7%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H F D +L + S+ + + I GGAVRD L L D+D ATT P ++ +F+ Sbjct: 21 HSLFTD-ELKTLASMFKRYGYEIRIAGGAVRDLLSGLRPTDLDFATTATPVQMKEMFTAE 79 Query: 67 RYKVIP-TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 ++I +GTI I K+ F++TTLR D++TDGR A+V FT DW D+LRRD TI Sbjct: 80 NVRMINMNGEKHGTITPRINDKENFEVTTLRIDVVTDGRRAEVQFTTDWLLDALRRDLTI 139 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNID 183 N+++ D +G V DY G DL+ ++F+GDA RI EDYLRILR+FRF+ E + Sbjct: 140 NSMFLDFEGAVYDYFYGYEDLKVHKVQFVGDAATRIKEDYLRILRYFRFYGRIAKEADKH 199 Query: 184 SDGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 +G + +I+ K+GL +S ERIW E+ K+LE + ++ + + G+ I L + + Sbjct: 200 EEGTLNAIRENKEGLGNISGERIWMELRKILEGNFAGDLLIKIIDCGLSSYIGLP-ERPN 258 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFFNC 301 +++L +V + K+ + + QD L+ K S+ R++ F+ Sbjct: 259 VEELKKVW--QNCGHLKLHPITLLCATLRNQDDAVALNSRLKLSVFERDLALFI------ 310 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL----ALHYNNLTHQDTCFILQVLSDIIH 357 + P +K L + I +F L Y N H L + + Sbjct: 311 --TEHRAPKPHVKPLMPYQQLVLKINNKNVFQYVVEVLKYINSPH---------LEEFQN 359 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 W P FP+TG+ + + G+ G+K+G +L + W + +++S EDL Sbjct: 360 WTIPKFPVTGNMLKEVGVESGRKMGLVLTELRNYWADQEYKISAEDL 406 >gi|296537169|ref|ZP_06899104.1| possible tRNA adenylyltransferase [Roseomonas cervicalis ATCC 49957] gi|296262504|gb|EFH09194.1| possible tRNA adenylyltransferase [Roseomonas cervicalis ATCC 49957] Length = 264 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 9/255 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD+L V D+D+A P + KV T + +GT+ + + ++ Sbjct: 8 VGGVVRDALAGRPVHDVDVAAPYPPREIADRLLAAGLKVFETGLQHGTVTAVLDHEPVEV 67 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 T+LR DL TDGR+A+V +T DW+ D+ RRDFT NAL D +G + DY GG DL ++ Sbjct: 68 TSLRRDLATDGRHAEVAWTTDWREDAARRDFTFNALSMDAEGHIWDYFGGREDLAAGRVR 127 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINK 211 F+GD R+ EDYLR+LRFFRF A YG+ ++ L A A GL+ LS+ER+W E+ + Sbjct: 128 FVGDPATRLAEDYLRVLRFFRFHARYGQGAPEAVALAALRDAVPGLQRLSAERVWMELKR 187 Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271 LLE P A+ M G+ + + +++ L++ + D +LR +L+ Sbjct: 188 LLEGPRPAAALALMRETGVLGAVLPEAGDLA--PLAR-------LDGPADPVLRLSLLLP 238 Query: 272 WQDKKSILSMAKKFS 286 L+ +FS Sbjct: 239 QGTPPDGLTQRLRFS 253 >gi|294085752|ref|YP_003552512.1| putative poly(A) polymerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665327|gb|ADE40428.1| putative poly(A) polymerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 407 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 118/394 (29%), Positives = 194/394 (49%), Gaps = 25/394 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ I + K ++ IVGGAVRD L + V DID+A + +R + +VI T Sbjct: 29 VMRIFDIAQKAGGEARIVGGAVRDWLAGMEVGDIDMAVNMPIERFADTLEQEGLRVIHTG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +S+GT+ ++ K +IT R D+ TDGR+AKV + DW D+ RRDFTINA+Y D GK Sbjct: 89 LSHGTVTVVQDKTKIEITHTRLDIETDGRHAKVTHSPDWLEDARRRDFTINAIYMDAAGK 148 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D + G +DL+ ++F+GDA R+ ED LR+LR+ RF +G ID+D L A + Sbjct: 149 IFDPLNGQDDLQAGILRFVGDADRRVQEDALRMLRYCRFLHRFGRGQIDADALAAFRRNA 208 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK---EIFLDVQEISLDQLSQVIE 251 + LS ER+ +E+ +L A A M + G+ I +V ++ D Sbjct: 209 SLAQHLSGERVRTEMELILVADGAAKACTLMQDTGLATAACAIDFNVGCLAPDG------ 262 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFNCNFNQKTLSI 310 A W I L S + +S+AK+ L + E R + + L+ Sbjct: 263 APDRDNW-------LIGLASIMPPGTAISLAKRLRLSKIEARRLQAMDRDIDPALPNLAG 315 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + ++ + GD A++ F ++ +W P P+TG D+ Sbjct: 316 DKWQQAAWFLGDGSA--------AIYAVKTRRSQAQFSTTRWDELQNWTAPECPVTGADL 367 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + +G+ G G+IL++ +++W+ S F L++ L Sbjct: 368 LSHGVDNGPICGDILLNIQKQWVASGFTLTKPAL 401 >gi|291236943|ref|XP_002738398.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like [Saccoglossus kowalevskii] Length = 418 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 202/384 (52%), Gaps = 30/384 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKI-ICRKKY 88 I GGAVRD L ++ QD+D+ATT P+ + +F K +++ T +GTI I K+ Sbjct: 45 IAGGAVRDLLGHIMPQDVDLATTATPEEMKVMFEKEGVRMLNTKGEKHGTITARINDKEN 104 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 F++TTLR D +TDGR+A+V FT+DW+ D+ RRD TIN+++ G + D+ GG DL + Sbjct: 105 FEVTTLRIDKVTDGRHAEVEFTKDWELDAERRDLTINSMFLGLDGTLYDFFGGQQDLAEK 164 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA----KKGLKILSSER 204 ++F+G+A RI EDYLRILR+FRF+ + D + + ++KA GL +S ER Sbjct: 165 KVEFVGNAVSRIQEDYLRILRYFRFYGRISDS--DDNHNIHTLKAIEDNAAGLADISGER 222 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 IW E+ K+L + + + MY + + I L V + ++D+ V K S+ Sbjct: 223 IWMELKKILIGRLAPSTLRCMYQLRLPQYIGLPV-DGNVDEFKFVWNRSLSMNPK--SMT 279 Query: 265 RFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG-- 321 L + ++ IL K S+ R++ FL+S Q + E+K + G Sbjct: 280 VLCALFNKEEDVIILDKRVKLSVQERKLGLFLVS-----SRQDVMDTDELKPFKDMVGQT 334 Query: 322 -DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKK 380 DK + K+ L N +Q+ D W+ P FP++G D++ GI P KK Sbjct: 335 KDKQIFPKVLELLKYKGN----------IQLYQDFQKWEIPKFPVSGKDLINMGIQPNKK 384 Query: 381 VGNILVHCKQEWINSSFQLSQEDL 404 G + ++ W NS + ++E L Sbjct: 385 FGRYMDRLREVWKNSDYTCTKESL 408 >gi|114585223|ref|XP_001140831.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial isoform 2 [Pan troglodytes] Length = 414 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 194/384 (50%), Gaps = 35/384 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QDID A+T P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDIDFASTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+L P NA SL++ +V + F K +LL Sbjct: 241 ELKKIL-VGLPANA--------------------SLEEFDKVSKNVDGFSPKPMTLL--A 277 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-YLYGDKVMI 326 L QD + L + K + + I + + T S +K ++ + Sbjct: 278 SLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPD 337 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 A ++ L Y + C +L ++ W P FP++G D+ K GI GK++G +L Sbjct: 338 ATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQ 389 Query: 387 HCKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 390 QLREQWKKSGYQMEKDELLSYIKK 413 >gi|195389791|ref|XP_002053557.1| GJ23286 [Drosophila virilis] gi|194151643|gb|EDW67077.1| GJ23286 [Drosophila virilis] Length = 454 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 135/415 (32%), Positives = 219/415 (52%), Gaps = 37/415 (8%) Query: 5 VQHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + FH +L +++L K + I GGAVRD LMN+ +DID ATT PD++ Sbjct: 37 VDSEEFHSIFTPELKALVALFKKYNYELRIAGGAVRDILMNIKPKDIDFATTATPDQMKE 96 Query: 62 IFSKTRYKVI-PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F+K ++I +GTI I K+ F++TTLR D+ TDGR+A VVFT DW+ D+ R Sbjct: 97 MFTKEEVRMINAKGEKHGTITPRIHNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANR 156 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G V DY G +D++ R + F+GDA RI EDYLRILR+FRF YG Sbjct: 157 RDLTINSMFLGFDGTVYDYFYGYDDVQQRRVVFVGDADVRIKEDYLRILRYFRF---YGR 213 Query: 180 KNIDSDG----LVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + D+ +A+IKA GL +S ERIW+E+ K++ L ++ M+N + ++ Sbjct: 214 ISADAQSHDKPTLAAIKANAAGLSRISGERIWAELQKIVVGNFGLELMLEMHNCDLLEQC 273 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRY 293 L Q ++ + ++ + FE +L L+ ++ L K S R++ Sbjct: 274 GLPTQP-NIAEFKRLCGDLKRFEQPHYPILYLTALLHTVEQAMKLHERLKLSAYERDLAL 332 Query: 294 FLI---SFFNCNFNQKTLSIPEIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 F+ + ++N ++ + +KL Y + + +L L Y N L Sbjct: 333 FITQQRQRVDSDYN----TLRDYQKLCLQPYAKRDYVEQL-----LKYAN--------KL 375 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++ + + W+ P P+ G+ + YG+ GK++G +L + W +S F L+ E L Sbjct: 376 ELYNQLKAWQTPNLPINGNTLKGYGL-VGKRMGLVLSELRLLWADSDFTLTSEQL 429 >gi|73985053|ref|XP_533758.2| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1 isoform 2 [Canis familiaris] Length = 416 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 196/383 (51%), Gaps = 33/383 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLNGVKPQDVDFATTATPAQMKDMFQSAGIRMINNKGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 ++F+G+A RI EDYLRILR+FRF+ +K D D L A + KGL +S ERIW Sbjct: 181 VRFVGNAKQRIQEDYLRILRYFRFYGKIIDKPGDHDPETLEAIAENAKGLAGISGERIWV 240 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+L P N+ SL++ ++V + F K +LL Sbjct: 241 ELKKIL-VGLPTNS--------------------SLEEFNKVSKNVDGFSPKPMTLL--A 277 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 L QD + L + K S + I + + T S +K Y D ++ + Sbjct: 278 SLFKVQDDVTKLDLRLKISKEEKNLGIFIVKNRKDLVKATDSSEPLKP----YQDFIIDS 333 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + L +Q +L+ + W P FP++G D+ K GI GK++G +L Sbjct: 334 RESDATTRVCELLKYQGEHGLLEQMQ---QWCIPPFPVSGHDIRKVGISSGKEIGALLQQ 390 Query: 388 CKQEWINSSFQLSQEDLHHLLRK 410 +++W S +Q+ +++L ++K Sbjct: 391 LREQWKKSGYQMEKDELLSYIKK 413 >gi|126734430|ref|ZP_01750177.1| polyA polymerase family protein [Roseobacter sp. CCS2] gi|126717296|gb|EBA14160.1| polyA polymerase family protein [Roseobacter sp. CCS2] Length = 378 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 136/402 (33%), Positives = 201/402 (50%), Gaps = 31/402 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W D + LL ++ VGG VR+ L++ V D+D++T LP+ VM++ Sbjct: 4 ISAPWLDDDASQQVCKLLADAGYQAWFVGGCVRNELLDEPVADLDLSTDALPEFVMKLAK 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + K IPT I +GT+ +I F+ITT R D+ TDGR A V ++ + D+ RRDFT+ Sbjct: 64 AAKIKAIPTGIDHGTVTLIVDDVPFEITTFRRDVATDGRRATVAYSDNMTDDARRRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 NALYAD G++ D +GGL DL+ R I+FI DA RI EDYLRILRFFRF+A YG+ N Sbjct: 124 NALYADADGQIADPLGGLPDLKARRIRFIEDADRRIKEDYLRILRFFRFYAWYGDVNDGP 183 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D DGL A +GL+ LS ERI +E+ KLL A +P A+ M + G ++ + S Sbjct: 184 DVDGLAACADNIEGLQSLSVERITAEMLKLLAAPDPAPALASMTSTGALAQVLPGAEPGS 243 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L+ +I EQ + L R VL LS + +L Sbjct: 244 ---LAVLIHLEQSLTIAPNPLRRLAVLGGKPGDALRLSKTQMRTL--------------- 285 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + T + ++ Y +G +V + L + A ++ L I + K + Sbjct: 286 -DHLTSGLSPVEA-SYRHGVQVGLDVLLVQSASLGQDIDK-------TALKPIENAAKQV 336 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FPL D++ G +G+ L + WI S F L++ L Sbjct: 337 FPLKAADLMP--ALSGPALGSALKEAETRWIRSGFTLTKAQL 376 >gi|209545131|ref|YP_002277360.1| polynucleotide adenylyltransferase region [Gluconacetobacter diazotrophicus PAl 5] gi|209532808|gb|ACI52745.1| Polynucleotide adenylyltransferase region [Gluconacetobacter diazotrophicus PAl 5] Length = 420 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/398 (28%), Positives = 192/398 (48%), Gaps = 24/398 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD L V D+D+AT PD+V+ KV+ T +++GT+ + + Sbjct: 36 RARLVGGVVRDLLAGRPVSDLDLATPEPPDQVLAALEAAGIKVVATGLAHGTVTAVIAGR 95 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++ITTLR D TDGR+A V +T DW D+ RRDFTINA+ + G V D GG DL Sbjct: 96 PYEITTLRRDERTDGRHAVVAWTDDWAEDAARRDFTINAMSCGRDGVVHDAFGGRADLEA 155 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--SDGLVASIKAKKGLKILSSERI 205 ++F+GD RI ED LR+LRFFRF A YG+ D + +A A L LS+ER+ Sbjct: 156 GHVRFVGDPATRIREDALRVLRFFRFHARYGQGTPDAAAMAAIADAAAAGALSRLSAERV 215 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 WSE+ ++L + ++ M G+ + + L L++++ A D++L Sbjct: 216 WSELRRILSGPAVMESLGLMERTGVLARLL--PEGYDLPALARLVAAGA----PPDAILF 269 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEI-------KKLF 317 VL + + +A + L R L S + +PE +++ Sbjct: 270 LGVLA----RATPGLLAARLRLSRAEAASLASLGVTADSAAPDPEVPEPGADDDARRRML 325 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 ++++ + A + + +D++ +P+FPL G DVV G+ Sbjct: 326 ANEAAEILVRRSWRVQAERVG----APSAAWDGLRADLLARARPVFPLAGRDVVAAGVAA 381 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G +VG +L + W+ + + L +++A + Sbjct: 382 GPRVGAVLERVRDWWMAGGCRAGRRACMAQLERMVADT 419 >gi|162149125|ref|YP_001603586.1| tRNA nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl 5] gi|161787702|emb|CAP57298.1| putative tRNA nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl 5] Length = 427 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/398 (28%), Positives = 192/398 (48%), Gaps = 24/398 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD L V D+D+AT PD+V+ KV+ T +++GT+ + + Sbjct: 43 RARLVGGVVRDLLAGRPVSDLDLATPEPPDQVLAALEAAGIKVVATGLAHGTVTAVIAGR 102 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++ITTLR D TDGR+A V +T DW D+ RRDFTINA+ + G V D GG DL Sbjct: 103 PYEITTLRRDERTDGRHAVVAWTDDWAEDAARRDFTINAMSCGRDGVVHDAFGGRADLEA 162 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--SDGLVASIKAKKGLKILSSERI 205 ++F+GD RI ED LR+LRFFRF A YG+ D + +A A L LS+ER+ Sbjct: 163 GHVRFVGDPATRIREDALRVLRFFRFHARYGQGTPDAAAMAAIADAAAAGALSRLSAERV 222 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 WSE+ ++L + ++ M G+ + + L L++++ A D++L Sbjct: 223 WSELRRILSGPAVMESLGLMERTGVLARLL--PEGYDLPALARLVAAGA----PPDAILF 276 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEI-------KKLF 317 VL + + +A + L R L S + +PE +++ Sbjct: 277 LGVLA----RATPGLLAARLRLSRAEAASLASLGVTADSAAPDPEVPEPGADDDARRRML 332 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 ++++ + A + + +D++ +P+FPL G DVV G+ Sbjct: 333 ANEAAEILVRRSWRVQAERVG----APSAAWDGLRADLLARARPVFPLAGRDVVAAGVAA 388 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G +VG +L + W+ + + L +++A + Sbjct: 389 GPRVGAVLERVRDWWMAGGCRAGRRACMAQLERMVADT 426 >gi|146278676|ref|YP_001168835.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides ATCC 17025] gi|145556917|gb|ABP71530.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides ATCC 17025] Length = 380 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 91/211 (43%), Positives = 132/211 (62%), Gaps = 2/211 (0%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 ++ W + + + L ++ VGG VR++L+ V DID+AT +PD V + + Sbjct: 3 IEGDWIAEPATQTLCAALAAAGHRALFVGGCVRNALLGRPVADIDLATDAVPDTVSAVAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIEHGTVTVIASGIPHEVTTFRRDIETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA+ G+VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG+ + + Sbjct: 123 NALYAEATGEVIDPLGGLPDLIARRVRFVGDPIQRIEEDYLRILRFFRFHAIYGDPSEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLL 213 D++GL A +GL LS ER+ +E+ KLL Sbjct: 183 DAEGLAACAARAEGLGQLSRERLGAEMRKLL 213 >gi|56417163|ref|YP_154237.1| poly (A) polymerase [Anaplasma marginale str. St. Maries] gi|222475528|ref|YP_002563945.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Florida] gi|56388395|gb|AAV86982.1| poly (A) polymerase [Anaplasma marginale str. St. Maries] gi|222419666|gb|ACM49689.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Florida] Length = 419 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 128/394 (32%), Positives = 193/394 (48%), Gaps = 26/394 (6%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K D ++ I+ + + +VGG VRDS++ DID+AT ++P+ V++ Sbjct: 4 KLVADPGVVRIVEAIEGARGNARLVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAG 63 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K IPT I +GT+ + ++ITTLR DL DGR+A V FT W D+ RRDFT NAL Sbjct: 64 IKTIPTGIKHGTVTAVVAGIPYEITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 Y D+ GK+ DY G+ DL NRT+ FIGDA RI ED+LRILR FRF A +K+ S+ + Sbjct: 124 YCDKSGKIYDYFSGMQDLENRTVVFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEI 183 Query: 188 V-ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 + K L LS ERI SE KLL N + + M G+ ++ + + +L Sbjct: 184 IFLCNKYADSLAKLSRERIRSEFFKLLACTNCASTLKIMEGCGVLHQVV--PYPVQIGRL 241 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 S A + K+ ++L+ L + S + + N F Sbjct: 242 SCTHLAGRAPITKLAAILKGYAHTDMSGTVEGLEALLRLSRKEKKLLETLLTTNLPF--- 298 Query: 307 TLSIPEIKKLFY-----LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK- 360 LS + +K +Y D V+++ FL+ ++T L + + K+ Sbjct: 299 PLSTTQQQKYLNDLGTDVYRDLVIVS----FLS--------KETLSASAFLEHLEYTKQF 346 Query: 361 -PL-FPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 PL P++G D+ K G GK +G+ L K+ W Sbjct: 347 APLSLPVSGKDLAKLGYKEGKLLGHTLKRLKETW 380 >gi|166158076|ref|NP_001107446.1| hypothetical protein LOC100135294 [Xenopus (Silurana) tropicalis] gi|156230028|gb|AAI52184.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Danio rerio] gi|163915741|gb|AAI57591.1| LOC100135294 protein [Xenopus (Silurana) tropicalis] Length = 405 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 202/400 (50%), Gaps = 27/400 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L+ + + K + + I GGAVRD L +D+D ATT P+ + +F ++I Sbjct: 16 LVGLAEIFQKSQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQTAGVRMINNK 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 76 GEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMFLGLDG 135 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASI 191 + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + + + L A Sbjct: 136 TLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPETLEAIR 195 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + +GL +S ERIW E+ K+L + + + +Y G+ Q L V E Sbjct: 196 ENARGLAGISGERIWVELKKMLVGNHAGHLLELVYELGL-------AQYTGLPADGDVEE 248 Query: 252 AEQVFEWK-IDSLLRFIVLIS-WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 +QV++ + S VL + ++ + + ++ ++ + RE + + F + + + Sbjct: 249 MKQVWQRAHVSSPKPMTVLAALFRKQADVENLDQRLKVSREEKN--LGLFLVKYRRDLIK 306 Query: 310 IPEIKKLFYLYGDKVMIAK-----LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + Y D + ++ K+ L Y ++L ++ W P FP Sbjct: 307 GHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN--------KLLDELRRWSIPRFP 358 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++G D+ K G GK++G IL + W S +Q+S+++L Sbjct: 359 VSGHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDEL 398 >gi|49618903|gb|AAT68036.1| tRNA nucleotidyl transferase-like [Danio rerio] Length = 405 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 202/400 (50%), Gaps = 27/400 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L+ + + K + + I GGAVRD L +D+D ATT P+ + +F ++I Sbjct: 16 LVGLAEIFQKNQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQTAGVRMINNK 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 76 GEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMFLGLDG 135 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASI 191 + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + + + L A Sbjct: 136 TLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPETLEAIR 195 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + +GL +S ERIW E+ K+L + + + +Y G+ Q L V E Sbjct: 196 ENARGLAGISGERIWVELKKMLVGNHAGHLLELVYELGL-------AQYTGLPADGDVEE 248 Query: 252 AEQVFEWK-IDSLLRFIVLIS-WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 +QV++ + S VL + ++ + + ++ ++ + RE + + F + + + Sbjct: 249 MKQVWQRAHVSSPKPMTVLAALFRKQADVENLDQRLKVSREEKN--LGLFLVKYRRDLVK 306 Query: 310 IPEIKKLFYLYGDKVMIAK-----LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + Y D + ++ K+ L Y ++L ++ W P FP Sbjct: 307 GHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN--------KLLDELRRWSIPRFP 358 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++G D+ K G GK++G IL + W S +Q+S+++L Sbjct: 359 VSGHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDEL 398 >gi|50344974|ref|NP_001002159.1| tRNA-nucleotidyltransferase 1, mitochondrial [Danio rerio] gi|47939337|gb|AAH71337.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Danio rerio] Length = 405 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 201/400 (50%), Gaps = 27/400 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L+ + + K + + I GGAVRD L +D+D ATT P+ + +F ++I Sbjct: 16 LVGLAEIFQKNQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKTMFQTAGVRMINNK 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 76 GEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMFLGLDG 135 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASI 191 + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + + + L A Sbjct: 136 TLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPETLEAIR 195 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + +GL +S ERIW E+ K+L + + + +Y G+ Q L V E Sbjct: 196 ENARGLAGISGERIWVELKKMLVGNHAGHLLELVYELGL-------AQYTGLPADGDVEE 248 Query: 252 AEQVFEWK-IDSLLRFIVLIS-WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 +QV++ + S VL + ++ + + + ++ + RE + + F + + + Sbjct: 249 MKQVWQRAHVSSPKPMTVLAALFRKQADVEKLDQRLKVSREEKN--LGLFLVKYRRDLIK 306 Query: 310 IPEIKKLFYLYGDKVMIAK-----LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + Y D + ++ K+ L Y ++L ++ W P FP Sbjct: 307 GHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN--------KLLDELRRWSIPRFP 358 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++G D+ K G GK++G IL + W S +Q+S+++L Sbjct: 359 VSGHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDEL 398 >gi|260431989|ref|ZP_05785960.1| poly A polymerase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415817|gb|EEX09076.1| poly A polymerase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 383 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 139/241 (57%), Gaps = 2/241 (0%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + N+ + L +G ++ VGG VR++L+ V D+DIAT P +VM + Sbjct: 3 ITEDWITNPATQNVCAALTEGGAQALFVGGCVRNALLGAPVSDLDIATDARPQQVMDLVE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K K +PT I +GT+ ++ +ITT R D+ TDGR A V F+ + D+ RRDFT+ Sbjct: 63 KAGLKAVPTGIDHGTVTVVSDGIPHEITTFRRDVETDGRRAVVAFSDQVEEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G ++D +GGL DLR R ++FIG A RI EDYLR LR+FRF A YG + + Sbjct: 123 NALYARPDGTILDPLGGLPDLRARRVRFIGTARDRIREDYLRSLRYFRFHAWYGDAQAGM 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A GL LS ER+ +E+ KLL A +P ++ M + G+ + + + Sbjct: 183 DPDALAAIAADLDGLDRLSRERVGAEMLKLLAAPDPAPSVAAMRSIGVLAHLLPGADDRA 242 Query: 243 L 243 L Sbjct: 243 L 243 >gi|198453059|ref|XP_001359047.2| GA15240 [Drosophila pseudoobscura pseudoobscura] gi|198132197|gb|EAL28190.2| GA15240 [Drosophila pseudoobscura pseudoobscura] Length = 450 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 131/405 (32%), Positives = 214/405 (52%), Gaps = 26/405 (6%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SI 75 +++SL K + + I GGAVRD +M + +DID ATT PD++ +F+K ++I + Sbjct: 48 SLVSLFKKYDYEIRIAGGAVRDIIMGIKPKDIDFATTATPDQMKDMFTKENVRMINSKGE 107 Query: 76 SYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTI I K+ F++TTLR D+ T+GR+A VVFT DW+ D+ RRD TIN+++ G Sbjct: 108 KHGTITPRINGKENFEVTTLRIDVRTNGRHADVVFTTDWQLDANRRDLTINSMFLGFDGT 167 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIK 192 V DY G +DL+ R + F+GDA RI EDYLRILR+FRF+ + ++ D L A K Sbjct: 168 VYDYFYGYDDLQQRRVVFVGDADIRINEDYLRILRYFRFYGRIAKDAESHDPSTLAAIKK 227 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 +GL +S ERIWSE+ K++ ++ M+ +F+ L V+ +L++ + E Sbjct: 228 NAEGLARISGERIWSELQKIIVGNYGNELVLEMHRCNLFQHCGLPVKP-NLNEFQILCET 286 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIP 311 +FE +L L+ ++ +L K S R++ F I+ + + ++ Sbjct: 287 LDIFEKPHYPILYMTGLLHSVEEAMMLHERLKLSAFERDLALF-ITQQRTRVDSEYTTLR 345 Query: 312 EIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + +KL Y + + +L L Y + + + + W P FPL G+ + Sbjct: 346 DYQKLCLQPYAKRDYVEQL-----LKYTRK--------VDLYNQLKAWSNPSFPLNGNIL 392 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQ----EDLHHLLRKL 411 +G+ GK +G L + W +S FQL+ E + +L KL Sbjct: 393 KDHGL-SGKNIGTGLSLLRLMWADSDFQLTSGQLLEKIPQILEKL 436 >gi|47227381|emb|CAF96930.1| unnamed protein product [Tetraodon nigroviridis] Length = 407 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 195/377 (51%), Gaps = 13/377 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L +D+D ATT P+ + R+F ++I T +GTI + F Sbjct: 35 IAGGAVRDLLSGRRPEDVDFATTATPEEMKRMFQSAGVRMINTKGEKHGTITARLHNENF 94 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 ++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+NR Sbjct: 95 EVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMFLGLDGTLYDYFQGYEDLQNRK 154 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++F+G A RI EDYLRILR+FRF+ + D + L A + GL +S ERIW Sbjct: 155 VRFVGSAVERIQEDYLRILRYFRFYGRVALEPDDHDPETLKAIRENGCGLASISGERIWV 214 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K++ + + + +Y+ + + + L + ++++ +V + K ++L + Sbjct: 215 ELKKMVVGDHAAHLLELIYSLELAQYMGLP-PDGDIEEMKRVWRNAKAHAPKPATMLASL 273 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 + + + M + + RE + ++ F + ++ P+ Y D ++ + Sbjct: 274 L----HSPEEVEKMDLRLKVSREEKN--LALFLVRYRRELQKSPDEPDSLRPYTDFIIDS 327 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + + L +Q +L LS W P FP++G D+ K GI GK++G L Sbjct: 328 READYQNKVCELLKYQGEPKLLAQLS---RWSIPRFPISGHDLRKMGITSGKEIGVALQQ 384 Query: 388 CKQEWINSSFQLSQEDL 404 + W S +++ +E+L Sbjct: 385 LRDVWKKSRYRMEKEEL 401 >gi|58038811|ref|YP_190775.1| Poly(A) polymerase/t-RNA nucleotidyltransferase [Gluconobacter oxydans 621H] gi|58001225|gb|AAW60119.1| Poly(A) polymerase/t-RNA nucleotidyltransferase [Gluconobacter oxydans 621H] Length = 396 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 114/367 (31%), Positives = 184/367 (50%), Gaps = 16/367 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGG+VRD L ++V D+D+AT PD V R + +VIPT +++GT+ + Sbjct: 26 KARLVGGSVRDLLAGVAVHDLDLATPEPPDDVQRRLEQAGIRVIPTGLAHGTVTALLDSV 85 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++ITTLR D TDGR+A V +T+DW D+ RRDFTINA+ D+ ++ DY GG D++N Sbjct: 86 PYEITTLRRDEETDGRHAIVAWTQDWAEDAARRDFTINAMSLDRHDRLHDYFGGREDIQN 145 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++F+GDA RI ED LR LRFFRF A YG D A + + LS+ER+ S Sbjct: 146 HRVRFVGDASRRIAEDALRALRFFRFDARYGHGVPDRKACQAVSEQLGLIGTLSAERVAS 205 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ ++L I M + G+ + + + + L++L E + SLLR Sbjct: 206 ELLRILSGPRLNETIGAMASVGLLQVLLPEPDQHFLNRL-------LACEAPVSSLLRLF 258 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMI 326 L ++ +A + L + ++ + LS ++++L L +++ Sbjct: 259 ALC----HRNSPELAGRLKLSNADGAKIEAWASAQPALHPELSDDDLRRLRVLQDLDLLV 314 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 + L L + S + +P FPL+G D + G+ PG +G L Sbjct: 315 ERSW----LQQARLVGAPDSVWDRFRSRLQAMPQPEFPLSGKDAIAQGVRPGPGMGQWLK 370 Query: 387 HCKQEWI 393 + W+ Sbjct: 371 TGRDWWM 377 >gi|321461613|gb|EFX72643.1| hypothetical protein DAPPUDRAFT_200873 [Daphnia pulex] Length = 418 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 124/404 (30%), Positives = 209/404 (51%), Gaps = 31/404 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP- 72 +L+ + + K + GG VRD LMN+ D+D ATT P ++ +F+ ++I Sbjct: 15 ELVQLQKIFEKHNYEIRFAGGPVRDLLMNIKPHDLDFATTATPQQMKDMFNSENIRMINL 74 Query: 73 TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T +GTI + I ++ F+ITTLR D++ GR+A+V FT+DW+ D+ RRD T+N+++ Sbjct: 75 TGEKHGTITVRINEQENFEITTLRIDVVNHGRHAEVEFTQDWELDANRRDLTVNSMFLGF 134 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 G V DY GG DL+ R + F+GDA R+ EDYLRILR+FRF A + N+ A+ Sbjct: 135 DGTVYDYCGGWEDLQKRRVAFVGDARTRMQEDYLRILRYFRFCARISPDPNLHEPDTEAA 194 Query: 191 IKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ++ +GL +S ERIW E+ ++L ++ + M GI I L + V Sbjct: 195 LRENMEGLSRISGERIWLELKQILSNRHAGPLLETMLRLGI-------APYIGLGEDPNV 247 Query: 250 IEAEQVFEWKIDS---LLRFIVLISWQDKK-SILSMAKKFSLP---REIRYFLISFFNCN 302 E + ++E ++ LL +L + D + + S+ + P +++ +F++ N Sbjct: 248 KEFKVIWERAKNNNVELLPITLLSALLDSEGAAASLHARLKYPNFDKDLSFFIVEHRNL- 306 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN--LTHQDTCFILQVLSDIIHWKK 360 +PE K Y V+ K K+ A+ L +Q ++ ++ W Sbjct: 307 -------LPEPFKPLRPYQMIVIDTKQKMKDAIFRGAELLRYQGKQ---ELANEFEKWVP 356 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P FP+ G D+ G+P GK + ++ + +W ++ FQ+S EDL Sbjct: 357 PRFPVGGADLKDKGVPGGKPMSMVIQKLRSKWKDNDFQISHEDL 400 >gi|194898865|ref|XP_001978983.1| GG10877 [Drosophila erecta] gi|190650686|gb|EDV47941.1| GG10877 [Drosophila erecta] Length = 477 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 131/425 (30%), Positives = 226/425 (53%), Gaps = 28/425 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V+ + + +L +++L K + + I GGAVRD LM + +DID+ATT P+++ + Sbjct: 63 VATPEFQSIFTPELNELVALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPEQMKQ 122 Query: 62 IFSKTRYKVI-PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F K ++I +GTI I K+ F++TTLR D+ TDGR+A+V++T DW+ D+ R Sbjct: 123 MFEKEEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANR 182 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 RD TIN+++ G V DY G +DL++R + F+G+A RI ED+LRILR+FRF+ Sbjct: 183 RDLTINSMFLGFDGTVYDYFYGYDDLQDRRVVFVGEADIRIKEDFLRILRYFRFYGRIAS 242 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 E D+ L A + KGL +S ERIWSE+ K++ + ++ +F+ I L Sbjct: 243 EEGKHDNATLSAIKENGKGLARISGERIWSELQKIVVGNFGSALFLELHRCNLFEYIGLP 302 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYF 294 +E L++ ++ +A FE +L ++ ++ + M K+ L R++ F Sbjct: 303 -EEPYLNEFDRLCKALDQFEKPHHPILYLTGML--HSVENAMEMHKRLKLSAYERDLARF 359 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 + +Q T K Y + + +L L Y+ L++ + Sbjct: 360 ITQEREKVDSQYTTLRDYQKLCLQKYIQRDFVEQL-----LKYSG--------KLELYNQ 406 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRK 410 + W KP FP+ G+ + ++G+ G ++G ++ K W +S FQL+ +DL ++L K Sbjct: 407 LKSWVKPDFPIKGNALAQHGL-NGMRLGLVMDELKLLWADSDFQLTHDDLLKKIPNVLEK 465 Query: 411 LIASS 415 + +SS Sbjct: 466 IPSSS 470 >gi|195502087|ref|XP_002098069.1| GE24143 [Drosophila yakuba] gi|194184170|gb|EDW97781.1| GE24143 [Drosophila yakuba] Length = 477 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 131/414 (31%), Positives = 220/414 (53%), Gaps = 28/414 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI- 71 +L +++L K + + I GGAVRD LM ++ +DID+ATT P+++ ++F K ++I Sbjct: 74 PELNELVALFKKYDYELRIAGGAVRDILMGIAPKDIDLATTATPEQMKQMFEKEEVRMIN 133 Query: 72 PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI I K+ F++TTLR D+ TDGR+A+V++T DW+ D+ RRD TIN+++ Sbjct: 134 ANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSMFLG 193 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLV 188 G V DY +DL+ R + F+G+A RI ED+LRILR+FRF+ E N D L Sbjct: 194 FDGTVYDYFYAYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEESNHDKATLE 253 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A + KGL +S ERIWSE+ K++ + M+ +F+ I L +E L++ + Sbjct: 254 AIKENAKGLTRISGERIWSELQKIVVGNFGPALFLQMHRCELFEYIGLP-KEPYLNEFDR 312 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCNFNQ 305 + +A FE +L ++ ++ + M K+ L R++ F+ +Q Sbjct: 313 LCKALDQFEKPHHPILYLTGML--HSVENAMEMHKRLKLSAYERDLARFITQEREKVDSQ 370 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 T K Y + + +L L Y+ L++ + + W KP FP+ Sbjct: 371 YTTLRHYQKLCLQKYIQRDFVEQL-----LKYSG--------KLELYNQLKSWVKPDFPI 417 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL----HHLLRKLIASS 415 G+ + ++G+ G ++G ++ K W +S FQL+ +DL ++L K+ SS Sbjct: 418 RGNALAQHGL-NGVRLGLVMDELKLLWADSDFQLTHDDLLKKIPNVLEKIPVSS 470 >gi|88607181|ref|YP_505747.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Anaplasma phagocytophilum HZ] gi|88598244|gb|ABD43714.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Anaplasma phagocytophilum HZ] Length = 409 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 196/393 (49%), Gaps = 29/393 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++ DID+AT +LP V+ K IPT + +GT+ + ++ Sbjct: 27 LVGGCVRDSIIQRETTDIDLATDLLPKTVLTSLKAAGIKAIPTGMQHGTVTAVVAGVPYE 86 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D DGR+A VVFT +W+AD+ RRDFT NALY D+ GK+ DY G+ DL++RT+ Sbjct: 87 ITTLRLDTKCDGRHASVVFTDNWEADASRRDFTFNALYCDKNGKIYDYFTGIRDLQSRTV 146 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKILSSERIWSE 208 FIGDA RI ED+LRILR FRF A + S+ + V S A+K L +LS ERI SE Sbjct: 147 AFIGDAEQRINEDFLRILRVFRFHASICSDSALSEEIINVCSKHARK-LALLSKERIRSE 205 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR--- 265 KLL +N + + M I +I I++ LS A + K+ +LL Sbjct: 206 FFKLLACRNCVGTLHIMERCDILAQII--PYHINVGVLSSPQIATRSPIAKLAALLHTEN 263 Query: 266 --FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 + V+ Q+ + L +++K E Q+ + + +Y D Sbjct: 264 PAYSVVEIAQNLTAALRLSRKEKNLLETLLLTKLELPLTVAQQQKYMNTLGT--EIYKDL 321 Query: 324 VMIAKLKIF----LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379 V+I LK LH + + +D + P++G D+++ G P G+ Sbjct: 322 VIINSLKSASLPESILHAHLASSED-------------FTPVTLPISGKDLIQLGYPTGR 368 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +G L + W +S++ L ++L+ Sbjct: 369 VLGQTLRTLQTMWEEDIRNVSRDQLLTTAKRLL 401 >gi|89052572|ref|YP_508023.1| polynucleotide adenylyltransferase protein [Jannaschia sp. CCS1] gi|88862121|gb|ABD52998.1| Polynucleotide adenylyltransferase protein [Jannaschia sp. CCS1] Length = 379 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 188/380 (49%), Gaps = 38/380 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR+ L+ L V DIDI T + P+RVM + K +PT I +GT+ ++ ++I Sbjct: 28 VGGCVRNGLLGLDVADIDICTNLRPERVMALAEAAGLKAVPTGIDHGTVTVVSGGLPYEI 87 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRNRTI 150 TTLR D+ TDGR+A V FT D+ RRDFT+NALYA + G+V+D G GL+DL R + Sbjct: 88 TTLRRDVETDGRHASVAFTDVLAEDAARRDFTMNALYATRGGEVLDPNGDGLSDLHARRV 147 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKILSSERIWSE 208 +FIGDA RI EDYLRILRFFRF A Y + + +D++ L A G+ LS ER+ +E Sbjct: 148 RFIGDADARIAEDYLRILRFFRFHAWYADPSGGLDAESLAACAAGLDGIAQLSRERVGAE 207 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 I LL A +P A+ M G+ + L L+ + D++ R Sbjct: 208 IKTLLRAPDPAPAVAAMDQTGVLAAVLPGASSRMLTLLTGLETG-----LTPDAVRRLAA 262 Query: 269 LISWQDKKSILSM----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 L D L + +K+ +L R + + ++ + +I L L ++ Sbjct: 263 L-GGDDVAERLRLSRSDSKRLTLYRTEMGAMTTPGALGYHHGLDAARDILVLRGLLSEQP 321 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 + A ALH L T FP+ D+ GK +G+ Sbjct: 322 VTAS-----ALHTAKLGATAT-----------------FPIRAADLPDL---HGKPLGDR 356 Query: 385 LVHCKQEWINSSFQLSQEDL 404 L + WI+S+F L++ +L Sbjct: 357 LKLLEARWIDSTFTLTKSEL 376 >gi|34581025|ref|ZP_00142505.1| poly(A) polymerase [Rickettsia sibirica 246] gi|28262410|gb|EAA25914.1| poly(A) polymerase [Rickettsia sibirica 246] Length = 418 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 199/374 (53%), Gaps = 33/374 (8%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96 RD L S DIDIAT + P V I S + K IPT + +GTI I + F+ITTLR Sbjct: 68 RDRLEKGSC-DIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITAILNNEKFEITTLRK 126 Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGD 155 D+ +GR+AKV+FT D+ D+ RRDFTINAL Y + ++ DY G DL+ + FIG+ Sbjct: 127 DIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGE 186 Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLE 214 A +RI EDYLRILRFFRF ++Y N DG + KA K GLK LS ERI SE++K++ Sbjct: 187 ALYRIKEDYLRILRFFRFSSYYA--NQLDDGNFKACKALKDGLKTLSRERIKSEMDKIIV 244 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 +K + M+ GI + IF +Q + EQ ++K++ + R+ +L+ Q Sbjct: 245 SKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRYALLLYCQK 297 Query: 275 KKSI-LSMAKKFSLPREIRYFLISFF--NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 ++ + + KFS ++ I+ F + FN K + + YL +++ Sbjct: 298 DLNLKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAARII------ 351 Query: 332 FLALHYNNLTH-QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 L H Q FIL+ + + +P F L G+D++ I KK+G L + K Sbjct: 352 ------GKLNHSQVKEFILKYDALL----RPKFQLNGNDLLNMNIEK-KKIGAKLEYLKN 400 Query: 391 EWINSSFQLSQEDL 404 WI F+ S+ +L Sbjct: 401 FWIEQDFKPSKLEL 414 >gi|255003514|ref|ZP_05278478.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Puerto Rico] Length = 405 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 185/371 (49%), Gaps = 26/371 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++ DID+AT ++P+ V++ K IPT I +GT+ + ++ Sbjct: 13 LVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAGIKTIPTGIKHGTVTAVVAGIPYE 72 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR DL DGR+A V FT W D+ RRDFT NALY D+ GK+ DY G+ DL NRT+ Sbjct: 73 ITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNALYCDKHGKIYDYFSGMQDLENRTV 132 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV-ASIKAKKGLKILSSERIWSEI 209 FIGDA RI ED+LRILR FRF A +K+ S+ ++ K L LS ERI SE Sbjct: 133 VFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEIIFLCNKYADSLAKLSRERIRSEF 192 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 KLL N + + M G+ ++ + + +LS A + K+ ++L+ Sbjct: 193 FKLLACTNCASTLKIMEGCGVLHQVV--PYPVQIGRLSCTHLAGRAPITKLAAILKGYAH 250 Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY-----LYGDKV 324 L + S + + N F LS + +K +Y D V Sbjct: 251 TDMSGTVEGLEALLRLSRKEKKLLETLLTTNLPF---PLSTTQQQKYLNDLGTDVYRDLV 307 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK--PL-FPLTGDDVVKYGIPPGKKV 381 +++ FL+ ++T L + + K+ PL P++G D+ K G GK + Sbjct: 308 IVS----FLS--------KETLSASAFLEHLEYTKQFAPLSLPVSGKDLAKLGYKEGKLL 355 Query: 382 GNILVHCKQEW 392 G+ L K+ W Sbjct: 356 GHTLKRLKETW 366 >gi|195055207|ref|XP_001994511.1| GH15807 [Drosophila grimshawi] gi|193892274|gb|EDV91140.1| GH15807 [Drosophila grimshawi] Length = 457 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 125/398 (31%), Positives = 209/398 (52%), Gaps = 21/398 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI- 71 +L +++L K + I GGAVRD LM + +D+D ATT P+++ +F+K ++I Sbjct: 47 PELETLVALFKKYNYELRIAGGAVRDILMKIKPKDVDFATTATPEQMKEMFTKEDVRMIN 106 Query: 72 PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI I + F++TTLR D+ TDGR+A VVFT +W+ D+ RRD TIN+++ Sbjct: 107 AKGEKHGTITPRINDMENFEVTTLRIDVRTDGRHADVVFTTNWQLDANRRDLTINSMFLG 166 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-YGEKNIDSDGLVA 189 G V DY G +D++ R I F+GDA RI EDYLRILR+FRF+ + N +A Sbjct: 167 LDGTVYDYFYGYDDVQRRRIIFVGDADVRIKEDYLRILRYFRFYGRIAADPNSHDPATLA 226 Query: 190 SIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 +IKA GL +SSER+W+E+ K++ ++ MYN G+ + L Q ++ + + Sbjct: 227 AIKANGAGLARISSERVWAELRKIIAGNFGRELVLEMYNCGLLEHCGLPAQP-NISEFER 285 Query: 249 VIEAEQVFEWKI-DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 + + + FE + +L L+ ++ L K S I+ + + Sbjct: 286 LCNSFKRFEEESHHPILYMCGLLHTTEQAMQLHERLKLSAYERDLALFITQQRHRIDNEY 345 Query: 308 LSIPEIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 S+ + +KL Y + + L L Y N L++ + W+ P FP+ Sbjct: 346 KSLRDCQKLCLQPYAKRDYVEHL-----LKYAN--------KLELYQQLKAWQIPNFPIK 392 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 G+ + YG+ +K+G +L + W++S ++L+ E+L Sbjct: 393 GNMLSSYGL-VHRKLGLVLNELRLLWVDSDYKLTAEEL 429 >gi|255004636|ref|ZP_05279437.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Virginia] Length = 405 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 185/371 (49%), Gaps = 26/371 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++ DID+AT ++P+ V++ K IPT I +GT+ + ++ Sbjct: 13 LVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAGIKTIPTGIKHGTVTAVVAGIPYE 72 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR DL DGR+A V FT W D+ RRDFT NALY D+ GK+ DY G+ DL NRT+ Sbjct: 73 ITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNALYCDKSGKIYDYFSGMQDLENRTV 132 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV-ASIKAKKGLKILSSERIWSEI 209 FIGDA RI ED+LRILR FRF A +K+ S+ ++ K L LS ERI SE Sbjct: 133 VFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEIIFLCNKYADSLAKLSRERIRSEF 192 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 KLL N + + M G+ ++ + + +LS A + K+ ++L+ Sbjct: 193 FKLLACTNCASTLKIMEGCGVLHQVV--PYPVQIGRLSCTHLAGRAPITKLAAILKGYAH 250 Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY-----LYGDKV 324 L + S + + N F LS + +K +Y D V Sbjct: 251 TDMSGTVEGLEALLRLSRKEKKLLETLLTTNLPF---PLSTTQQQKYLNDLGTDVYRDLV 307 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK--PL-FPLTGDDVVKYGIPPGKKV 381 +++ FL+ ++T L + + K+ PL P++G D+ K G GK + Sbjct: 308 IVS----FLS--------KETLSASAFLEHLEYTKQFAPLSLPVSGKDLAKLGYKEGKLL 355 Query: 382 GNILVHCKQEW 392 G+ L K+ W Sbjct: 356 GHTLKRLKETW 366 >gi|195452400|ref|XP_002073337.1| GK14077 [Drosophila willistoni] gi|194169422|gb|EDW84323.1| GK14077 [Drosophila willistoni] Length = 477 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 132/421 (31%), Positives = 215/421 (51%), Gaps = 25/421 (5%) Query: 5 VQHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V FH +L ++SL K + I GGAVRD LM++ +DID+ATT PD++ Sbjct: 64 VDSPEFHSIFTPELEQLVSLFKKYNFELRIAGGAVRDILMSIKPKDIDLATTATPDQMKE 123 Query: 62 IFSKTRYKVI-PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F+K ++I +GTI I K+ F++TTLR D+ TDGR+A VVFT DW+ D+ R Sbjct: 124 MFTKEDVRMINAKGEKHGTITPRINNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANR 183 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G V DY G DL+ R I+F+GDA+ RI EDYLR+LR+FRF+ Sbjct: 184 RDLTINSMFLGFDGTVYDYFYGYEDLQERRIRFVGDANIRIKEDYLRVLRYFRFYGRIAN 243 Query: 180 --KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + D++ L+A GL +S ERIWSE+ K++ ++ M + + L Sbjct: 244 DANSHDTETLLAVKDNAAGLGRISGERIWSELQKIVVGNYGRELLLEMNRCQLLEYCGLP 303 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREIRYFLI 296 L + ++ + FE +L L+ + +D + K + R++ F+ Sbjct: 304 SHP-ELQEFERLCGDLEQFEPPNHPILYMTGLLHTVEDAMKLHERLKLSAYERDLALFIT 362 Query: 297 SFFNCNFNQKTLSIPEIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + +++ + + +KL Y + + +L L Y+N L++ + Sbjct: 363 QQRD-RVDKEYSCLRDYQKLCLQPYAKRDYVEQL-----LKYSN--------KLELHRQL 408 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 W P FP+ G+ + G+ G+K+G L + W +S F+L+ E L L ++I Sbjct: 409 KSWATPSFPINGNTLKGSGL-VGQKLGLALTQLRLLWADSDFKLTSEQLMEKLPEIIDQL 467 Query: 416 Q 416 Q Sbjct: 468 Q 468 >gi|328793093|ref|XP_397254.4| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like, partial [Apis mellifera] Length = 400 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 130/408 (31%), Positives = 211/408 (51%), Gaps = 54/408 (13%) Query: 16 INILS-LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 +NIL+ L K + I GGAVRD LM++ D+D AT P+ + +F K ++I Sbjct: 31 LNILAELFKKYNYELKIAGGAVRDILMDIKPLDLDFATDATPEEMKTMFVKENVRMINNR 90 Query: 74 SISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI I K+ F+ITTLR D TDGRYAK+ FT+DWK D+LRRD TIN+++ D + Sbjct: 91 GERHGTITARINDKQNFEITTLRIDTHTDGRYAKIKFTKDWKLDALRRDLTINSMFLDFE 150 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASI 191 GK+ DY G +DL+ R + F+G+ HRI EDYLRILR+FRF+ E+ ++ + + +I Sbjct: 151 GKIYDYFFGYDDLQKRRVVFVGNPSHRIKEDYLRILRYFRFYGRIAEQPDVHDESTIIAI 210 Query: 192 KAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K GL+ +S ERIWSE +K+L + M I + + L + +++ V Sbjct: 211 KENIHGLQRISGERIWSEWSKILSGNYAKELTLKMLKCNIARYVGLP-ENPNIENFKIVY 269 Query: 251 EAEQVFEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLP---REIRYFLISFFNCNFNQK 306 + VF+ SL L + +D+ + + + L R++ FL + Sbjct: 270 D---VFKKNNISLQPITFLAVMLKDENEVFQLHNRLKLSAYDRDLALFLTRY-------- 318 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + DK I LK + + H N H +K FP++ Sbjct: 319 -------------WEDKPSIDLLKFYKSPHCN-----------------THPRK--FPVS 346 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 G +++K + GK +G ++ K W++ +F+++ E+L H + ++I+ Sbjct: 347 G-NMLKQHVKKGKMMGIVIKELKNIWLDKNFEMNAEELLHEVPRIISE 393 >gi|241674815|ref|XP_002400153.1| poly(A) polymerase, putative [Ixodes scapularis] gi|215504191|gb|EEC13685.1| poly(A) polymerase, putative [Ixodes scapularis] Length = 455 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 124/395 (31%), Positives = 197/395 (49%), Gaps = 29/395 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKI-ICRKKY 88 I GGAVRD LM+ + QD+D ATT P+++ +F ++I T +GT+ I K Sbjct: 70 IAGGAVRDLLMHKAPQDLDFATTATPNQMKSMFEDEGVRMINTKGEKHGTVTARINDKTN 129 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 F++TTLR D++TDGR+A+V FT DW+ D+ RRD T+NAL+ G V D+ G+ DL R Sbjct: 130 FEVTTLRIDVVTDGRHAEVEFTTDWETDANRRDLTVNALFLGLDGTVYDFFHGIEDLEKR 189 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG-----LVASIKAKKGLKILSSE 203 + F+GDA RI EDYLRILR+FRF YG ++ D L A + GL +S E Sbjct: 190 RVAFVGDAAQRIREDYLRILRYFRF---YGRIAVEPDSHEPEVLTAIRENVGGLGGISGE 246 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E+ K+L + + + G+ FL L + ++E E+V E Sbjct: 247 RLWVELKKILVGNFNRELVCRLVDLGV--SPFL-----GLPESPDLVEFEKVCERSKHLF 299 Query: 264 LRFIVLIS--WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS--IPEIKKLFYL 319 + L++ Q + +L+M + L R ++ ++K L + + L + Sbjct: 300 PQPTTLLAALLQTEAEVLNMHARLKLSAYERDLVLFVVKHRCDKKCLGDRLKPYQALLFT 359 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379 KV + I L Y ++L W P FP+ G+ +++ G+ G Sbjct: 360 TKGKVGDVQEWICEVLKYRADA--------ELLERFRCWDVPRFPVNGNMLLERGLRSGP 411 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K +L K+ W S F ++ ++L L +++A Sbjct: 412 KFATVLGKLKEIWFESDFAMTSDELLQRLPEILAQ 446 >gi|71995920|ref|NP_001023976.1| hypothetical protein F55B12.4 [Caenorhabditis elegans] gi|13548403|emb|CAB02125.2| C. elegans protein F55B12.4, confirmed by transcript evidence [Caenorhabditis elegans] Length = 436 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 199/382 (52%), Gaps = 23/382 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICR---K 86 I GGAVRD LMN+ D+D A+T P ++ +F + + +++ +GTI CR Sbjct: 40 IAGGAVRDLLMNIRPADVDFASTATPTQMKEMFEEDKIRMLHKRGEEHGTI--TCRIDDC 97 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + F+ITTLR D++ DGR A+V +T DW+ D+ RRD TIN+L+ D G V+DY GG+ D+ Sbjct: 98 ENFEITTLRVDIVCDGRRAQVEYTTDWQLDANRRDLTINSLFLDLHGNVVDYFGGIRDIE 157 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILSSERI 205 R I F+GDA RI EDYLRILR+FRFF + + D + A ++ K G+ +S+ERI Sbjct: 158 TRRIAFVGDARQRIQEDYLRILRYFRFFGRISDCTEHEHDTIQAIVENKDGMAGISAERI 217 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W+E+ K++ + + M ++ +E +L++ V F ++ + Sbjct: 218 WTELKKIVVGRMADEVLKAMIEQCELQKYLGLPKECNLERFHTVFNR---FSKTVEPMTM 274 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L +D+ I + L + R L F +++ ++ +K + + D+++ Sbjct: 275 IACLC--EDEHQIAEFHRITKLSNDER-LLGEFI---LSERQSAVENLKNDDW-WIDRIV 327 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSD------IIHWKKPLFPLTGDDVVKYGIPPGK 379 +++ + L + VL+D I +++ P FP+TG D+++ G+ G Sbjct: 328 DLEVRPGHENQQDRLRQRLVQLAKSVLADEERIQMIENFEAPKFPITGRDLMEAGVRKGP 387 Query: 380 KVGNILVHCKQEWINSSFQLSQ 401 V N+L + W S F S+ Sbjct: 388 HVRNVLYYLYNLWKESRFTESK 409 >gi|157964083|ref|YP_001498907.1| Poly(A) polymerase [Rickettsia massiliae MTU5] gi|157843859|gb|ABV84360.1| Poly(A) polymerase [Rickettsia massiliae MTU5] Length = 418 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 139/423 (32%), Positives = 212/423 (50%), Gaps = 63/423 (14%) Query: 18 ILSLLN-KGEDKSCIVGGAVRDSLMNL------------------------------SVQ 46 ILSLLN KG+ + ++GG VRD+L++L Sbjct: 19 ILSLLNEKGQAR--LIGGCVRDTLLDLLHNKTNKEEFAGSTYKLPLEASYPRDRLEKGSY 76 Query: 47 DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK 106 DIDIAT + P V I S + K IPT + +GTI + F+ITTLR D+ +GR+AK Sbjct: 77 DIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNEKFEITTLRKDIECNGRHAK 136 Query: 107 VVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 V+FT D+ D+ RRDFTINAL Y + ++ DY G DL+ + FIG+A RI EDYL Sbjct: 137 VIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGEALDRIKEDYL 196 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 RILRFFRF ++Y + +D A K GLK LS ERI SE++K++ +K + M Sbjct: 197 RILRFFRFSSYYANQ-LDDGNFKACKALKDGLKTLSRERIKSEMDKIIVSKRAAQILKAM 255 Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-LSMAKK 284 + GI + IF +Q + EQ ++K++ + R+ +L+ Q ++ + + K Sbjct: 256 FEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRYALLLYCQKDFNLKVFLDWK 308 Query: 285 FSLPREIRYFLISFF--NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 FS ++ I+ F + FN K + + YL ++ L H Sbjct: 309 FSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAASII------------GKLNH 356 Query: 343 -QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 Q FIL+ + + +P F + G+D++ I K++G L + K WI F+ S+ Sbjct: 357 SQVKEFILKYDALL----RPKFQVNGNDLLNMNIEK-KEIGIKLEYLKNFWIEQDFKPSK 411 Query: 402 EDL 404 +L Sbjct: 412 LEL 414 >gi|269958436|ref|YP_003328223.1| poly (A) polymerase [Anaplasma centrale str. Israel] gi|269848265|gb|ACZ48909.1| poly (A) polymerase [Anaplasma centrale str. Israel] Length = 425 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 122/401 (30%), Positives = 200/401 (49%), Gaps = 26/401 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + K D ++ I+ ++ +VGG VRDS++ + +DID+AT ++P+ VM Sbjct: 1 MAQTMLSKLLDDPGVVRIVGVIEGARGSVRLVGGCVRDSVLGRNTKDIDLATDLVPESVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT + +GT+ + ++ITTLR D+ DGR+A V FT W D+ RR Sbjct: 61 QALGGAGIKTVPTGVKHGTVTAVVEGIPYEITTLRRDVECDGRHAAVAFTNSWMEDASRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFT NALY D+ GK+ DY G+ DL NRT+ FIG+A RI ED+LRILR FRF A Sbjct: 121 DFTFNALYCDKHGKIYDYFSGIRDLGNRTVAFIGNAEARINEDFLRILRVFRFHASICNT 180 Query: 181 NIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + S+ ++ S+ K I LS ER+ SE KLL + + + M G+ ++ Sbjct: 181 SPLSEEII-SLCGKYAWSIAKLSKERVRSEFFKLLACTHCTSTLEIMERCGVLCQVV--P 237 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW----QDKKSILSMAKKFSLPREIRYF 294 + + +LS V ++ K+ ++L+ + + +L +++K Sbjct: 238 YPVQIGRLSCVHLVDRTPITKLAAMLKGHAYTDMAGVVEGLEGLLCLSRKEKKLLATLLT 297 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 F Q+ + ++ +Y D ++++ FL+ QDT L Sbjct: 298 TDLPFPLPIAQQQKYLNDLGA--DVYRDLIIVS----FLS--------QDTLSENAFLEH 343 Query: 355 IIHWKK--PL-FPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 + + K+ PL P++G D+ K G GK +G+ L K+ W Sbjct: 344 LEYTKQFAPLVLPVSGKDLAKLGYKEGKLLGHTLKRLKEAW 384 >gi|307166915|gb|EFN60819.1| tRNA-nucleotidyltransferase 1, mitochondrial [Camponotus floridanus] Length = 478 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 128/401 (31%), Positives = 209/401 (52%), Gaps = 24/401 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI- 71 +L + +L K + I GGAVRD LM+ +D+D AT P ++ +F+K ++I Sbjct: 68 PELQTLANLFKKYNYELRIAGGAVRDILMSKQPKDLDFATDATPQQMKEMFTKEEIRMIN 127 Query: 72 PTSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI I K+ F+ITTLR D++T+GR+A+V FT+DWK D+ RRD TIN+++ D Sbjct: 128 EKGEKHGTITARINDKENFEITTLRIDVLTNGRHAQVEFTKDWKLDANRRDLTINSMFLD 187 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G + DY G +DL+ + + F+GDA RI EDYLRILR+FRF+ + D A+ Sbjct: 188 LDGTLYDYFYGYDDLQRKRVVFVGDADTRIREDYLRILRYFRFYGRIMDSPDKHDE--AT 245 Query: 191 IKAKK----GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 IKA K GL +S ERIWSE NK+L L + + G K I L +E ++ Sbjct: 246 IKALKENIDGLSQISGERIWSEWNKILMGNFALELTLKLLECGASKHIGLP-EEPVVENF 304 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCNF 303 V + + + + ++ +D+ ++++ + L R++ +FL+ Sbjct: 305 RIVYQRALSNNVTLKPISLIVSMLRNEDE--VMTVHNRLKLSNSDRDLAFFLMQHREYIP 362 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 +K L P + + + I + + L Y +++L ++ WK P F Sbjct: 363 CEKPLK-PYQQLILIQSTGRYEIYREYVKEVLRYRG--------AMELLDEVEQWKIPKF 413 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P+ G +++K + K +G +L KQ WI+ F+L+ E L Sbjct: 414 PING-NMMKEHVSNPKIIGLVLKKLKQIWIDEDFKLTSEHL 453 >gi|254456611|ref|ZP_05070040.1| poly(A) Polymerase [Candidatus Pelagibacter sp. HTCC7211] gi|207083613|gb|EDZ61039.1| poly(A) Polymerase [Candidatus Pelagibacter sp. HTCC7211] Length = 424 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/384 (30%), Positives = 195/384 (50%), Gaps = 16/384 (4%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR + ++ DID+AT + P+ V K + T I +GTI + K+ ++I Sbjct: 50 VGGCVRKIIKKEAIDDIDLATNLKPNEVCEALKKNKIDYYETGIEHGTITALIDKQKYEI 109 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 T+LR D++TDGR+AK+ F+ DWK D+ RRDF+IN++Y+D+ G + D G DL I Sbjct: 110 TSLRKDILTDGRHAKIEFSSDWKEDAERRDFSINSIYSDKNGNLFDPNNGKKDLEEGLIN 169 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINK 211 FIGD +RI EDYLRILR+ RFF +Y + + + G+ LSSER+ E K Sbjct: 170 FIGDTENRIKEDYLRILRYVRFFINYSNHKHRPEIIKIIKRNIDGISKLSSERLLDEFKK 229 Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271 + +KN L + + IF + + + +F LL +V+ Sbjct: 230 ITNSKNFLKLFEDDLSLELLYLIFPQFKNLENFKKLNSYAKNNIFNIDFIFLLSLMVIDG 289 Query: 272 WQDKKSILSMAKKFSLPR--EIRYFLI-SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA- 327 + + L KF++ + + R +I SF+N N K + + K Y G++ +I Sbjct: 290 TDNTEYFLY---KFNISKIDQKRLKMINSFYNEGINIKKFTKKNLNKYLYYNGNEAVIDI 346 Query: 328 -KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 KIF + N + +L+ D + P+ P+T ++ + IP GK +GN Sbjct: 347 INFKIFKS----NKVEKKLINLLEYYKDKVI---PIIPITAKTLMNDFNIPEGKTLGNKF 399 Query: 386 VHCKQEWINSSFQLSQEDLHHLLR 409 ++ W+N+ F++S + + +++ Sbjct: 400 KSIEEIWVNNGFKISDKQVQKVIK 423 >gi|157827883|ref|YP_001494125.1| poly(A) polymerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932572|ref|YP_001649361.1| poly(A) polymerase [Rickettsia rickettsii str. Iowa] gi|157800364|gb|ABV75617.1| poly(A) polymerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907659|gb|ABY71955.1| poly(A) polymerase [Rickettsia rickettsii str. Iowa] Length = 436 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 198/374 (52%), Gaps = 33/374 (8%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96 RD L S +DIDIAT + P V I S + K IPT + +GTI + F+ITTLR Sbjct: 86 RDRLEKGS-RDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNEKFEITTLRK 144 Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGD 155 D+ +GR+AKV+FT D+ D+ RRDFTINAL Y + ++ DY G DL+ + FIG+ Sbjct: 145 DIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGE 204 Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLE 214 A RI EDYLRILRFFRF ++Y N DG + KA K GLK LS ERI SE++K++ Sbjct: 205 ALDRIKEDYLRILRFFRFSSYYA--NQLDDGSFKACKALKDGLKTLSRERIKSEMDKIIV 262 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 +K + M+ GI + IF +Q + EQ ++K++ + R+ +L+ Q Sbjct: 263 SKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRYALLLYCQK 315 Query: 275 KKSI-LSMAKKFSLPREIRYFLISFF--NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 ++ + + KFS ++ I+ F + FN K + + YL +++ Sbjct: 316 DLNLKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAARII------ 369 Query: 332 FLALHYNNLTH-QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 L H Q FIL+ + + +P F + G+D++ I KK+G L + K Sbjct: 370 ------GKLNHSQVKEFILKYDALL----RPKFQVNGNDLLNMNIEK-KKIGAKLEYLKN 418 Query: 391 EWINSSFQLSQEDL 404 WI F+ S+ +L Sbjct: 419 FWIEQDFKPSKLEL 432 >gi|229586245|ref|YP_002844746.1| Poly(A) polymerase [Rickettsia africae ESF-5] gi|228021295|gb|ACP53003.1| Poly(A) polymerase [Rickettsia africae ESF-5] Length = 436 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 197/374 (52%), Gaps = 33/374 (8%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96 RD L S DIDIAT + P V I S + K IPT + +GTI + F+ITTLR Sbjct: 86 RDRLEKGSC-DIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNEKFEITTLRK 144 Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGD 155 D+ +GR+AKV+FT D+ D+ RRDFTINAL Y + ++ DY G DL+ + FIG+ Sbjct: 145 DIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGE 204 Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLE 214 A RI EDYLRILRFFRF ++Y N DG + KA K GLK LS ERI SE++K++ Sbjct: 205 ALDRIKEDYLRILRFFRFSSYYA--NQLDDGNFKACKALKDGLKTLSRERIKSEMDKIIV 262 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 +K + M+ GI + IF +Q + EQ ++K++ + R+ +L+ Q Sbjct: 263 SKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRYALLLYCQK 315 Query: 275 KKSI-LSMAKKFSLPREIRYFLISFF--NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 ++ + + KFS ++ I+ F + FN K + + YL +++ Sbjct: 316 DLNLKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAARII------ 369 Query: 332 FLALHYNNLTH-QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 L H Q FIL+ + + +P F + G+D++ I KK+G L + K Sbjct: 370 ------GKLNHSQVKEFILKYDALL----RPKFQVNGNDLLNMNIEK-KKIGAKLEYLKN 418 Query: 391 EWINSSFQLSQEDL 404 WI F+ S+ +L Sbjct: 419 FWIEQDFKPSKLEL 432 >gi|15891938|ref|NP_359652.1| poly(A) polymerase [Rickettsia conorii str. Malish 7] gi|15619048|gb|AAL02553.1| poly(A) polymerase [Rickettsia conorii str. Malish 7] Length = 436 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 197/374 (52%), Gaps = 33/374 (8%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96 RD L S DIDIAT + P V I S + K IPT + +GTI + F+ITTLR Sbjct: 86 RDRLEKGSC-DIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNEKFEITTLRK 144 Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGD 155 D+ +GR+AKV+FT D+ D+ RRDFTINAL Y + ++ DY G DL+ + FIG+ Sbjct: 145 DIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGE 204 Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLE 214 A RI EDYLRILRFFRF ++Y N DG + KA K GLK LS ERI SE++K++ Sbjct: 205 ALDRIKEDYLRILRFFRFSSYYA--NQLDDGNFKACKALKDGLKTLSRERIKSEMDKIIV 262 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 +K + M+ GI + IF +Q + EQ ++K++ + R+ +L+ Q Sbjct: 263 SKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRYALLLYCQK 315 Query: 275 KKSI-LSMAKKFSLPREIRYFLISFF--NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 ++ + + KFS ++ I+ F + FN K + + YL +++ Sbjct: 316 DLNLKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAARII------ 369 Query: 332 FLALHYNNLTH-QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 L H Q FIL+ + + +P F + G+D++ I KK+G L + K Sbjct: 370 ------GKLNHSQVKEFILKYDALL----RPKFQVNGNDLLNMNIEK-KKIGAKLEYLKN 418 Query: 391 EWINSSFQLSQEDL 404 WI F+ S+ +L Sbjct: 419 FWIEQDFKPSKLEL 432 >gi|239948431|ref|ZP_04700184.1| poly(A) polymerase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922707|gb|EER22731.1| poly(A) polymerase [Rickettsia endosymbiont of Ixodes scapularis] Length = 436 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 195/364 (53%), Gaps = 32/364 (8%) Query: 47 DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK 106 DIDIAT ++P V I S + K IPT + +GTI I + F+ITTLR D+ +GR+AK Sbjct: 95 DIDIATNLIPSEVTNILSGAKIKTIPTGLKFGTITAILNNEKFEITTLRKDIECNGRHAK 154 Query: 107 VVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 VVFT D+ D+ RRDFTINAL Y + ++ DY G DL+ + FIG+A RI EDYL Sbjct: 155 VVFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGEALDRIKEDYL 214 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 RILRFFRF ++Y N DG + KA K GLK LS ERI SE++K++ +K + Sbjct: 215 RILRFFRFSSYYA--NQLDDGSFKACKALKDGLKTLSRERIKSEMDKIIVSKRAAQILKA 272 Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-LSMAK 283 M+ GI + IF +Q + EQ ++K++ R+ +L+ Q ++ + + Sbjct: 273 MFEIGILELIF-SIQNYEIKFF------EQANDFKLELATRYALLLYCQKDLNLKVFLDW 325 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEI--KKLFYLYGDKVMIAKLKIFLALHYNNLT 341 KFS ++ I+ F N+ +I +I KK Y K + A L Sbjct: 326 KFSRHEAMQILSITNF---LNEAKFNIKKIWFKKKNY---------KEYLLAASIIGKLN 373 Query: 342 H-QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 H Q FIL+ + + +P F + G+D++ I K++G L + K WI F+ S Sbjct: 374 HSQAKEFILKYDALL----RPKFQVNGNDLLNMNIEK-KEIGAKLEYLKNFWIEQDFKPS 428 Query: 401 QEDL 404 + +L Sbjct: 429 KLEL 432 >gi|148235405|ref|NP_001082356.1| ATP(CTP):tRNA nucleotidyltransferase precursor [Xenopus laevis] gi|24753797|gb|AAN64029.1|AF466151_1 ATP(CTP):tRNA nucleotidyltransferase precursor [Xenopus laevis] Length = 428 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 195/386 (50%), Gaps = 32/386 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L D+D ATT P+++ +F K ++I ++GT+ F Sbjct: 56 IAGGAVRDLLSGKQPHDVDFATTATPEQMKDMFLKDGVRLINNKGETHGTVTARDNVSEF 115 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D G + R + D+ RRD TIN+++ G + DY G DL+NR Sbjct: 116 EITTLRVDCTQMGDMLSGIHDR-LEIDAERRDLTINSMFLGFDGTLYDYFNGYEDLKNRC 174 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAK-KGLKILSSERIWS 207 ++F+GD RI EDYLRILR+FRF+ E++ + G + +++ GL+ +S ERIW Sbjct: 175 VRFVGDPSQRIQEDYLRILRYFRFYGRISERSGAHTSGTLDAVRENASGLRGISGERIWV 234 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ K+LE + + I +Y+ G+ + L ++ +L++ ++V E + K +LL Sbjct: 235 ELKKILEGNHVNHLIQIIYDLGVAPHVGL-PEDGNLEEFARVCERSRRMSPKPMTLL--T 291 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 L S D L + K S +K L++ +++ L ++ A Sbjct: 292 ALFSNTDHVQKLDLRLKISK----------------EEKNLALFLLQQRRELTAERTDAA 335 Query: 328 KLKIFLALHYNNL---THQDTCFIL------QVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 LK F ++ TH+ C +L Q ++ W P FP++G D+ + GI G Sbjct: 336 PLKPFKDYVVDSREPDTHRKICELLKYQGEEQFFREMEGWTLPRFPVSGHDLRRMGISSG 395 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDL 404 K++G IL K+ W S FQ S+E+L Sbjct: 396 KEIGRILQELKEHWKGSGFQTSKEEL 421 >gi|326435446|gb|EGD81016.1| CCA-adding enzyme [Salpingoeca sp. ATCC 50818] Length = 455 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 119/394 (30%), Positives = 189/394 (47%), Gaps = 41/394 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ +D D ATT LP + ++ +V+ T + +GT+ + ++ Sbjct: 91 LVGGAVRDILLERWPKDYDFATTALPQQTQQLLESRGVRVVLTGLQHGTVTAVIDNVPYE 150 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 +TTLR D V FT DWK D+ RRD TINA+ D G + DY G + L I Sbjct: 151 VTTLRLDHEGAEGTGPVCFTDDWKLDAERRDLTINAMSMDLDGHIFDYFDGRDHLAQEKI 210 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-KGLKILSSERIWSEI 209 F+GD RI ED+LRILR+FRF N + +I +GL+ +S ERIW E+ Sbjct: 211 VFVGDPAQRIQEDFLRILRYFRFHGKVCRHNNHEPAQIQAITDNVQGLESVSGERIWMEM 270 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFL-DVQEISLDQLSQV----IEAEQVFEWKIDSLL 264 +K+L+ + M G+ I L +V++ L +L V +E +D + Sbjct: 271 SKILKTARAPELVECMQACGVLPHIQLANVEQHHLQRLRHVHRYELEPATALTALVDDVQ 330 Query: 265 RFI-VLISWQDKKSILSMAKKFSLPREIRYFLISFFN---CNFNQKTLSIPEIKKLFYLY 320 +F V +W+ LS A+ R++ F+I + C + + L + I + + Sbjct: 331 QFEGVAAAWR-----LSNAE-----RKLGLFIIQHRDVDVCMNSAQDLLVDGINRTY--- 377 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKK 380 + +L + H D +Q W P FP+TG ++++G+ PG Sbjct: 378 -----VTQLCRYQG-------HLDIAVAMQ------DWAVPEFPITGKKLIQHGLKPGPN 419 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +G +L K W S FQL +E+L + ++AS Sbjct: 420 MGRVLAALKDNWKQSRFQLGEEELLAQMDSVVAS 453 >gi|170594816|ref|XP_001902140.1| polyA polymerase family protein [Brugia malayi] gi|158590356|gb|EDP29010.1| polyA polymerase family protein [Brugia malayi] Length = 480 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 138/439 (31%), Positives = 210/439 (47%), Gaps = 59/439 (13%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + Q K +LI + L K + + + GGAVRD LM + DID AT P+++ Sbjct: 38 IDTPQFKALFTPELIKLNDLFKKNDFQLRMAGGAVRDLLMGIKPCDIDFATNATPEKMKE 97 Query: 62 IFSKTRYKVI-PTSISYGTIKIICR---KKYFDITTLRS------------DLITDGRYA 105 +F + +++ +GTI CR K+ F+ITTLR D + DGR A Sbjct: 98 LFLREGIRMLNKNGEEHGTI--TCRIDDKENFEITTLRHVNFCYIIHFEQIDTVCDGRRA 155 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 K+ FT +W+ D+ RRD T+N+L+ D G VIDY GG+ DL R I F+GDA+ RI EDYL Sbjct: 156 KIEFTTNWQLDANRRDLTVNSLFLDLDGTVIDYFGGIKDLEERKIVFVGDANQRIQEDYL 215 Query: 166 RILRFFRFFAHY---GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 RILR+FRF+ GE + D L A I + GLK +S ERIW E+ K+ Sbjct: 216 RILRYFRFYGRLAIDGEMH-DKATLDAIISNRNGLKDISGERIWMELKKI---------C 265 Query: 223 VHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK--------------IDSLLRFIV 268 V G + + SL L + +A+ V+ K + SL + Sbjct: 266 VGRLGGAVLTTMLKRCNLASLLGLPE--KADTVYFCKLHKRYYPKIEAMTLLSSLFTEMG 323 Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---FNQKTLSIPEIKKLFYLYGDKVM 325 I ++ LS A+K + + + N N F + L I E +L K+ Sbjct: 324 QIEIFHRRCKLSYAEKTLTEFIVEHRDEAEKNVNSILFFKNILLIEE--RLHKFTRKKIQ 381 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 ++ K+ Y + ++++++ W+ P FP+ G D++ I PG V IL Sbjct: 382 TSREKVIELAKYAMVND-------ELINELSIWEMPTFPIGGIDLMHNNISPGPHVKQIL 434 Query: 386 VHCKQEWINSSFQLSQEDL 404 + Q WI S + +S+E+L Sbjct: 435 DYLFQIWIESEWMISKEEL 453 >gi|242010004|ref|XP_002425767.1| tRNA-nucleotidyltransferase 1, putative [Pediculus humanus corporis] gi|212509693|gb|EEB13029.1| tRNA-nucleotidyltransferase 1, putative [Pediculus humanus corporis] Length = 469 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 123/380 (32%), Positives = 198/380 (52%), Gaps = 34/380 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS-YGTIKIICRKKYF 89 IVGGAVRD L+ +D+D ATT PD + ++F + ++I + +GTI + +K + Sbjct: 91 IVGGAVRDLLLGKKPEDLDFATTATPDEMKKMFESNKVRMINMNGERHGTITVRLNEKNY 150 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D ITDGR+A+V FT++W D+ RRD TINA+Y D G + DY+ T Sbjct: 151 EITTLRIDTITDGRHAEVEFTKNWFCDANRRDLTINAMYLDFNGTLYDYL---------T 201 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAK-KGLKILSSERIWS 207 F+G+A RI EDYLRILR+FRF+ E + + ++ SIK KGL +S ERIW+ Sbjct: 202 STFVGEASLRIQEDYLRILRYFRFYGKIAKEPDNHEEEILQSIKENAKGLVTISGERIWT 261 Query: 208 EINKLLEAK--NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 EI+K+L K + + + M N G + +L +L +V E + FE+ + Sbjct: 262 EISKILMGKFVYEILSKIQMLNVGSYIGF---PSSCNLSELKRVTENLKKFEFSAKPMTI 318 Query: 266 FIVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 F L Q++ + + K S +++ YF+I N Q+++ + + L + Sbjct: 319 FSSLFHTQEEITDFYLKIKASTFDKQLGYFIILNRNDKKEQESIKVYQRYILTEQNSRQA 378 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 + L++ L YN +++ ++ +W+ P FPL G+ + G+ G + Sbjct: 379 LTFSLEL---LKYNG--------NVELHKELENWRIPKFPLNGNMLKSKGVN-----GKV 422 Query: 385 LVHCKQEWINSSFQLSQEDL 404 L K+ WI F + L Sbjct: 423 LSELKEIWIKEDFNIDNNKL 442 >gi|262276836|ref|ZP_06054629.1| tRNA-nucleotidyltransferase 1 [alpha proteobacterium HIMB114] gi|262223939|gb|EEY74398.1| tRNA-nucleotidyltransferase 1 [alpha proteobacterium HIMB114] Length = 414 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 119/389 (30%), Positives = 200/389 (51%), Gaps = 24/389 (6%) Query: 26 EDKSCI-VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 ED C+ VGG VRD L + DID AT++ P++V +K+ T YG+IK+ Sbjct: 32 EDVVCLFVGGCVRDLLFGKELSDIDFATSLEPEQVKNKLNKSNITYDDTFEKYGSIKVFI 91 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 K+F++ TLR D DGR+A V+FT+DW+ D+LRRD TIN++Y D G+V D G++D Sbjct: 92 NNKFFEVNTLRKDFNEDGRHASVMFTKDWRQDALRRDLTINSIYCDLDGRVYDPFKGVDD 151 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++N IKFIGD RI EDYLR LR+FRF + + + + L + + ++ LS ER Sbjct: 152 IKNGHIKFIGDPAKRIKEDYLRALRYFRFHIQFSKHDHEEYILKYISQNQDNIENLSKER 211 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 + E++K+L + + ++ +F ++ ++ ++ + + +++ + ++D Sbjct: 212 LIDEMSKILISGLGYKLFSNNFSKDLFLSVYKGIKYLTRLEFKR---KKRILKKEVD--- 265 Query: 265 RFIVLISW---QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS----IPEIKKLF 317 ++VLIS ++ K F+L EI+ L + F KT I +KK Sbjct: 266 -WVVLISLLLIDQTRNFERFVKDFNLSNEIKSRLNN-LQLQFTFKTTDTIEKIENLKKAV 323 Query: 318 YLYGDKVMIAKLKIFLALHY--NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 YG +A + F+ Y N H D L I K P F + ++K G Sbjct: 324 LKYG----VASVIDFIHFQYLVNEKYHYD--LYESNLKVIKETKPPEFKFDANILIKKGF 377 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDL 404 +GN + KQ W+ +++++ +D+ Sbjct: 378 KEDANLGNAINFLKQRWVANNYEIRDKDI 406 >gi|71082812|ref|YP_265531.1| Poly(A) polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1062] gi|71061925|gb|AAZ20928.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1062] Length = 424 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 122/383 (31%), Positives = 193/383 (50%), Gaps = 16/383 (4%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR + + DID+A + P V +K K + I +GTI + F+I Sbjct: 50 VGGCVRKIINKEAYDDIDLAVNLNPKEVCEALTKKDIKYYESGIEHGTITALINDIKFEI 109 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 T+LR D+ TDGR+AKV F+ WK D+ RRDFTIN++YAD +G + D G DL I Sbjct: 110 TSLRKDIDTDGRHAKVEFSDSWKEDASRRDFTINSIYADIEGSLFDPFDGKKDLERGKIN 169 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINK 211 FIG+ RI EDYLR+LR+ RFF Y + + D + A K G+ +SSER+ E K Sbjct: 170 FIGNVETRIKEDYLRVLRYVRFFLSYSKHSHDPQVIKAIKKNLSGVSSISSERLIDEFQK 229 Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271 LL++ L I IF ++ ISL + E LL +++I Sbjct: 230 LLKSNGFLKLTKDKDCLEIINLIFPQIKNISLFNKMNSFAKKNFLEMDFIFLLS-LMIID 288 Query: 272 WQDKKSILSMAKKFSLPR--EIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAK 328 D ++ KF+L + + R ++ FN N +T S + K+FY G + ++ Sbjct: 289 GTD--NVDYFIYKFNLSKKDQKRLIFLNKFNLEKNTNQTFSEKNLNKIFYFNGREALLDV 346 Query: 329 L--KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNIL 385 L KIF + +N +++++ + P+ P ++ KY IP GK++G L Sbjct: 347 LYFKIFKSKKVDNK-------LIKMIEIFKKKEMPVMPFKASTLMEKYKIPEGKELGQKL 399 Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408 ++ W ++ F++S ++L ++ Sbjct: 400 KAIEEVWTSNDFKISDKELQKIV 422 >gi|91762765|ref|ZP_01264730.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1002] gi|91718567|gb|EAS85217.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1002] Length = 424 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 194/383 (50%), Gaps = 16/383 (4%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR + + DID+A + P V +K K + I +GTI + F+I Sbjct: 50 VGGCVRKIINKEAYDDIDLAVNLNPKEVCEALTKKDIKYYASGIEHGTITALINDIKFEI 109 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 T+LR D+ TDGR+AKV F+ WK D+ RRDFTIN++YAD +G + D G DL + I Sbjct: 110 TSLRKDIDTDGRHAKVEFSDSWKEDASRRDFTINSIYADIEGSLFDPFDGKKDLESGKIN 169 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINK 211 FIG+ RI EDYLR+LR+ RFF Y + + D + A K G+ +SSER+ E K Sbjct: 170 FIGNVETRIKEDYLRVLRYVRFFLSYSKHSHDPQVIKAIKKNLSGVSSISSERLIDEFQK 229 Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271 LL++ L I IF ++ ISL + E LL +++I Sbjct: 230 LLKSNGFLKLTKDKDCLEIINLIFPQIKNISLFNKMNSFAKKNFLEMDFIFLLS-LMIID 288 Query: 272 WQDKKSILSMAKKFSLPR--EIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAK 328 D ++ KF+L + + R ++ FN N +T S + K+FY G + ++ Sbjct: 289 GTD--NVDYFIYKFNLSKKDQKRLIFLNKFNLEKNTNQTFSEKNLNKIFYFNGREALLDV 346 Query: 329 L--KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNIL 385 L KIF + +N +++++ + P+ P ++ KY IP G+++G L Sbjct: 347 LYFKIFKSKKVDNK-------LIKMIEIFKKKEMPVMPFKASTLMEKYQIPEGRELGQKL 399 Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408 ++ W ++ F++S ++L ++ Sbjct: 400 KAIEEVWTSNDFKISDKELQKIV 422 >gi|170747035|ref|YP_001753295.1| polynucleotide adenylyltransferase region [Methylobacterium radiotolerans JCM 2831] gi|170653557|gb|ACB22612.1| Polynucleotide adenylyltransferase region [Methylobacterium radiotolerans JCM 2831] Length = 412 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 121/389 (31%), Positives = 180/389 (46%), Gaps = 30/389 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPTSI 75 +L+ L+ ++ +VGG VRD+L+ DID+ATT P+ VMR + K +PT I Sbjct: 21 RVLAALDAPGAETRLVGGCVRDALLGAQTADIDMATTHRPEAVMRAAQRAHGLKAVPTGI 80 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 +GT+ ++ ++TTLR D+ TDGR+A V F D+ D+ RRDFT+NAL G + Sbjct: 81 EHGTVTLVTEDGPIEVTTLREDVETDGRHAVVRFGTDFLRDAERRDFTVNALSLGADGSL 140 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D VGG DL ++FIGD RI ED LRILRFFRF A +G D+ L A + A+ Sbjct: 141 HDPVGGRPDLAAGRVRFIGDPATRIREDALRILRFFRFHARFGAGAPDAAALAACVAARD 200 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L LS ER+ +E KLL A + + G+ I V E L +L++ A Sbjct: 201 SLDRLSRERVRAEFLKLLAAPGGPALVTTLSATGLLARITGGVGE--LGRLARAAGAGLP 258 Query: 256 FEWKIDSL----------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 ++ +L LR + +S + +L A+ L C Sbjct: 259 PVKRLAALAVGARHDADRLRERLRLSKSEHGHLLGYAE----------VLADLHGCAV-- 306 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 L + L +G + L I +T + + + P FPL Sbjct: 307 --LDAVAARALAARHGLSCLADTLAILAGEPRPAVTEAARAALRALEGE---GASPAFPL 361 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 G D+V G+ PG +G L ++ W+ Sbjct: 362 AGADLVAAGVAPGPGIGRGLAAARKVWLE 390 >gi|198422855|ref|XP_002122885.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1 [Ciona intestinalis] Length = 488 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 188/387 (48%), Gaps = 30/387 (7%) Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKKYFDI 91 GGAVRD L+ + D+D+ATT P ++ +F K ++I S+GT+ ++ F+I Sbjct: 111 GGAVRDLLLGKAPHDLDLATTATPTEMIEMFRKNDVRLICENGWSHGTVTCRVEEQNFEI 170 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 TTLR D +TDGR A V +T+DW D+ RRD T N+L+ G VIDY G++D++++ ++ Sbjct: 171 TTLRIDRVTDGRRALVEYTKDWYLDASRRDLTCNSLFLTMSGNVIDYFNGISDVKDKKVR 230 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILSSERIWSEI 209 F+GD RI EDYLRILR+FRFF E+ D L K GL ++ ER W E Sbjct: 231 FVGDPALRIQEDYLRILRYFRFFGRLKEEPAIPDESTLQEITKYGSGLGGVAGERKWVEF 290 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 +L + + + MY GI K++ L +++ L++ V + F +LL I L Sbjct: 291 TMILNGRLLVLIMKMMYRCGILKQLGLP-EQVDLEEFENVYNRSKHFSPNHMTLLTSI-L 348 Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 D +S+ K + F+I + L P DK MI+ Sbjct: 349 KDKTDLDHFMSVIKCSRYEYNVAKFIIE-------HRALYRP----------DKDMISVY 391 Query: 330 KIFLALHYN------NLTHQDTCFILQ--VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 L Y N+ + +I Q ++ H+ P FPL G + + GK V Sbjct: 392 VDLLVDSYKQDKNLVNVFMELMKYIGQADIMDYFTHFNIPTFPLKGGILKERFGMKGKPV 451 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLL 408 G + Q+W S ++L E L L+ Sbjct: 452 GIAINFAFQKWKESRYKLDSEALLQLI 478 >gi|238650332|ref|YP_002916184.1| poly(A) polymerase [Rickettsia peacockii str. Rustic] gi|238624430|gb|ACR47136.1| poly(A) polymerase [Rickettsia peacockii str. Rustic] Length = 408 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 141/239 (58%), Gaps = 12/239 (5%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96 RD L S +DIDIAT + P V I S + K IPT + +GTI + F+ITTLR Sbjct: 86 RDRLEKGS-RDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNEKFEITTLRK 144 Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGD 155 D+ +GR+AKV+FT D+ D+ RRDFTINAL Y + ++ DY G DL+ + FIG+ Sbjct: 145 DIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGE 204 Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLE 214 A RI EDYLRILRFFRF ++Y N DG + KA K GLK LS ERI SE++K++ Sbjct: 205 ALDRIKEDYLRILRFFRFSSYYA--NQLDDGSFKACKALKDGLKTLSRERIKSEMDKIIV 262 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273 +K + M+ GI + IF +Q + EQ ++K++ + R+ +L+ Q Sbjct: 263 SKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRYALLLYCQ 314 >gi|156552292|ref|XP_001600496.1| PREDICTED: similar to ENSANGP00000010598 [Nasonia vitripennis] Length = 575 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 124/394 (31%), Positives = 197/394 (50%), Gaps = 26/394 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS-YGTIKI-ICRKKY 88 + GGAVRD LM +D+D ATT P + +F+K ++I + +GTI I K+ Sbjct: 39 VAGGAVRDILMGKHPKDLDFATTATPVEMKEMFTKEEVRMINCNGEKHGTITSRINDKEN 98 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 F++TTLR D++TDGR+A VVFT DW D+ RRD TIN+++ D GKV DY G +DL R Sbjct: 99 FEVTTLRVDVVTDGRHADVVFTTDWLLDASRRDLTINSMFLDLDGKVYDYFYGYDDLMKR 158 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIW 206 + F+G+ RI ED+LRI R+FRF+ + N D + A + KGL+I+S ERIW Sbjct: 159 RVAFVGEPAQRICEDFLRIFRYFRFYGRIADVPDNHDEKTITAIKENVKGLEIISGERIW 218 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 SE +K+L + + G K + L + ++L+ +++ Q K + LR Sbjct: 219 SEWSKILAGNFHRELTLKLIECGCSKYMGLP-ENLNLEHFNKICLNAQ----KNNVKLRP 273 Query: 267 IVLIS--WQDKKSILSMAKKFSLP---REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 I LI+ ++ +L + + P R + F++ + L P + + G Sbjct: 274 ISLIAALLHTEEEVLQLFMRLRFPNFDRNLALFIVQHREEKLCENPLK-PYQRVVLKTIG 332 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 KV + + L Y L +L + W FP+ G V Y P K + Sbjct: 333 -KVSDVREFVSELLRYKG--------SLDLLEEFEKWDS-RFPINGGMVKPYVENP-KVI 381 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G ++ K W++S+ ++ E L + + A + Sbjct: 382 GEVINRLKDIWLDSNCEMPVEKLQKHIPDIAAEA 415 >gi|114585225|ref|XP_526118.2| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 4 [Pan troglodytes] Length = 346 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 110/338 (32%), Positives = 178/338 (52%), Gaps = 16/338 (4%) Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + Sbjct: 20 HGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLF 79 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAK 194 DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K D D L A + Sbjct: 80 DYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENA 139 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQVIEAE 253 KGL +S ERIW E+ K+L N +N ++H+ Y+ + I L SL++ +V + Sbjct: 140 KGLAGISGERIWVELKKIL-VGNHVNHLIHLIYDLDVAPYIGLPAN-ASLEEFDKVSKNV 197 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPE 312 F K +LL L QD + L + K + + + F++ S P Sbjct: 198 DGFSPKPMTLL--ASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPL 255 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 ++ + A ++ L Y + C +L ++ W P FP++G D+ K Sbjct: 256 KPYQDFIIDSREPDATTRVCELLKYQG----EHC----LLKEMQQWSIPPFPVSGHDIRK 307 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 308 VGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 345 >gi|74177543|dbj|BAB27827.3| unnamed protein product [Mus musculus] Length = 290 Score = 162 bits (410), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 141/239 (58%), Gaps = 6/239 (2%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L ++ L K + I GGAVRD L + QD+D ATT P ++ +F ++I Sbjct: 45 LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNK 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 105 GEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 164 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASI 191 + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ ++ D D L A Sbjct: 165 TLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHETLEAIA 224 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQV 249 + KGL +S ERIW E+ K+L + +N ++H+ Y+ G+ I L +L++ ++V Sbjct: 225 ENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPAN-ANLEEFNKV 281 >gi|148666982|gb|EDK99398.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_c [Mus musculus] Length = 296 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 141/239 (58%), Gaps = 6/239 (2%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L ++ L K + I GGAVRD L + QD+D ATT P ++ +F ++I Sbjct: 51 LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNK 110 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 111 GEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 170 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASI 191 + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ ++ D D L A Sbjct: 171 TLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHETLEAIA 230 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM-YNGGIFKEIFLDVQEISLDQLSQV 249 + KGL +S ERIW E+ K+L + +N ++H+ Y+ G+ I L +L++ ++V Sbjct: 231 ENAKGLAGISGERIWVELKKILTGDH-VNHLIHLIYDLGVAPHIGLPAN-ANLEEFNKV 287 >gi|312075805|ref|XP_003140580.1| hypothetical protein LOAG_04995 [Loa loa] gi|307764256|gb|EFO23490.1| hypothetical protein LOAG_04995 [Loa loa] Length = 438 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 129/416 (31%), Positives = 201/416 (48%), Gaps = 30/416 (7%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + Q K +LI + L + + + GGAVRD LM + DID AT P+ + Sbjct: 13 IDTPQFKALFTPELIKLNDLFKRNNFQLRMAGGAVRDLLMGIKPSDIDFATNATPEEMKE 72 Query: 62 IFSKTRYKVI-PTSISYGTIKIICR---KKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 +F + +++ +GTI CR K+ F+ITTLR D++ DGR AK+ FT W+ D+ Sbjct: 73 LFIREGIRMLNKNGEEHGTI--TCRIDDKENFEITTLRIDIVCDGRRAKIEFTTSWQLDA 130 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRD T+N+L+ D G V DY GG+ DL R I F+GDA+ RI + + I FF A Sbjct: 131 NRRDLTVNSLFLDLDGTVFDYFGGIKDLEKRRIVFVGDANQRIQD--ITIFPFFGRLALD 188 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 GE + + L A I GLK +S ERIW+E+ K+ + + M + Sbjct: 189 GEAH-EKATLDAIISNGHGLKDISGERIWTELKKICVGRLGDAVLTTMLKRCNLASLLGL 247 Query: 238 VQEISL-------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 + + + Q IEA + + SL + I K+ LS A+K Sbjct: 248 PENPDIAYFCKLHKRYYQKIEAMTL----LSSLFTEMKHIELFHKRCKLSYAEKTLAEFI 303 Query: 291 IRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 + + + N N N K + + E ++L KV ++ K+ Y T Sbjct: 304 VEHRDEAKKNANSNLFFKNMLLNE-ERLHKFTRKKVQTSREKVIELAKY-------TMVD 355 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 +++S++ WK P+FP+ G D++ +PPG V IL H + WI S + +S+E+L Sbjct: 356 DELISELNAWKTPVFPVGGIDLMYNNVPPGSHVKQILDHLFKIWIESQWMMSKEEL 411 >gi|326928160|ref|XP_003210249.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like [Meleagris gallopavo] Length = 385 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/342 (33%), Positives = 186/342 (54%), Gaps = 27/342 (7%) Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GT K+ ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ G + D Sbjct: 63 GTSKL--HEQNFEITTLRIDVVTDGRHAEVEFTTDWEKDAERRDLTINSMFLGLDGMLYD 120 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--SDGLVASIKAKK 195 + G DL+++ I+F+G A RI EDYLRILR+FRF+ EK D S L A + K Sbjct: 121 FFNGYEDLKSKKIRFVGKATARIQEDYLRILRYFRFYGRIAEKPGDHESSTLQAIKENAK 180 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 GL +S ERIW E+ K+L K+ + + +Y+ + + I L V +LD+L +V + + Sbjct: 181 GLAGISGERIWVELKKILIGKHVNHLVRLLYDLDVAQYIGLPVNG-NLDELDRVSKNTEN 239 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIK 314 K ++L L +D + L + K S + + +FL+ +++ L+ Sbjct: 240 LCPKPMTVL--TSLFKVKDDVTNLDLRLKISKEEKNLGFFLLK------HREELTKATGP 291 Query: 315 KLFYLYGDKVMIAK-----LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + Y D +M ++ KI L Y Q+L ++ W P FP++G D Sbjct: 292 EPLKPYQDFIMDSREANTISKILELLKYQGEE--------QLLKEMQQWTVPTFPVSGHD 343 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + K GI GK++G+ L ++EW S + + +E+L ++K+ Sbjct: 344 LRKMGITCGKEIGSALQQLREEWKKSGYCMDKEELLSCMKKV 385 >gi|58697619|ref|ZP_00372820.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila simulans] gi|58535877|gb|EAL59663.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila simulans] Length = 303 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 163/310 (52%), Gaps = 18/310 (5%) Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDA 156 D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + DY GG+ DL+ R + FIG+A Sbjct: 2 DVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKVRRLNFIGNA 61 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 RI EDYLRILR FRF A ++ + L K ++ LS ERI EI KLLE Sbjct: 62 EDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCKKHSHMIQNLSGERIRDEILKLLECN 121 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI--SWQD 274 +P + M + ++I +E+ + LS + + D+L++ +L+ + D Sbjct: 122 DPFPTLKSMQESDVLQKII--PKEVKCEILSSSL------LFGTDALVKLALLLRTTKND 173 Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 + S+ KF + + F N + LS E KK L+G ++ +KI Sbjct: 174 RLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGRELYCDLVKICGV 233 Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 N+ + +S + P FPL+GDD++ G PGK +G L KQ W + Sbjct: 234 ESGENVD--------EYISFANTFNIPKFPLSGDDLISIGHQPGKSLGRNLELLKQHWED 285 Query: 395 SSFQLSQEDL 404 SS+ L++E+L Sbjct: 286 SSYTLTKEEL 295 >gi|308496537|ref|XP_003110456.1| hypothetical protein CRE_05412 [Caenorhabditis remanei] gi|308243797|gb|EFO87749.1| hypothetical protein CRE_05412 [Caenorhabditis remanei] Length = 479 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 117/399 (29%), Positives = 199/399 (49%), Gaps = 36/399 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICR---K 86 I GGAVRD LMN+ D+D A+T P ++ +F + +++ +GTI CR Sbjct: 69 IAGGAVRDLLMNIHPADVDFASTATPTQMKEMFEEENIRMLHKRGEEHGTI--TCRIDEA 126 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + F+ITTLR D++ DGR A+V +T DW+ D+ RRD TIN+L+ D G V+DY GG+ D+ Sbjct: 127 ENFEITTLRIDVVCDGRRAEVKYTTDWQQDANRRDLTINSLFLDLHGNVVDYFGGIADIE 186 Query: 147 NRTIKFIGDAHHRILEDYLRILRF-----------FRFFAHYGE----KNIDSDGLVASI 191 +R + F+GDA RI EDYLRILR+ FR+F +G ++D + A I Sbjct: 187 SRRVAFVGDARQRIQEDYLRILRYESQQFLIGSNSFRYFRFFGRISNTPEHEADTIQAII 246 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K G+ +S+ERIW+E+ K++ + + M ++ + +L++ +V Sbjct: 247 DNKDGMAGISAERIWTELKKIVVGRMADIVVKSMIEQCQLQKYLGLPENCNLNRFQKVFT 306 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFFNC---NFNQKT 307 F ++ + L +++ ++ K S R + F++ N N + Sbjct: 307 R---FPKCVEPMTMIACLCEEEEQIALFHKITKLSNDERLLGEFILRERNAAIENLDNND 363 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 I I +L G + + +L++ L L + L ++ +Q++ + P FP+T Sbjct: 364 WWIDRIVELEVRPGHENQLDRLRLRLVQLARSVLADEER---IQMIEKFV---APQFPIT 417 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 D++ + G V N+L + W S F ++E L Sbjct: 418 AQDLIDLQKVRRGPHVRNVLFYLLDLWKASRFTETRETL 456 >gi|255261768|ref|ZP_05341110.1| poly A polymerase family protein [Thalassiobium sp. R2A62] gi|255104103|gb|EET46777.1| poly A polymerase family protein [Thalassiobium sp. R2A62] Length = 383 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 142/254 (55%), Gaps = 6/254 (2%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VR+++++L + D+D+++ P++ +I S KVI T +GTI ++ +I Sbjct: 31 VGGCVRNAVLDLPIHDVDLSSNATPEQGTKIASAAGLKVISTGYDHGTITVVSDGTPLEI 90 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 T+ R D+ T GR A V +++ D+ RRDFT+NALYA G+V+D +GGL DL R ++ Sbjct: 91 TSFRRDVETYGRRAVVAYSQSIDDDARRRDFTMNALYARATGEVVDPLGGLLDLYARRLR 150 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILSSERIWSEI 209 FI +A RI ED+LR LRFFRF A Y ++ + + + + A GL+ L ERI +E+ Sbjct: 151 FIENADQRIQEDFLRSLRFFRFHALYADQTLGFEPEAIAAISGNLDGLETLPKERIGAEM 210 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 KLL A +P AI M G+ + +L L V EA V I R + + Sbjct: 211 VKLLAATDPAPAIATMGQCGVLMRVLPGAAAAALAVLVHVEEAYSVAPNAI----RRLCV 266 Query: 270 ISWQDKKSILSMAK 283 + +D L ++K Sbjct: 267 VGGEDPVRDLRLSK 280 >gi|115640845|ref|XP_784774.2| PREDICTED: similar to Chain A, Crystal Structure Of Human Cca-Adding Enzyme, partial [Strongylocentrotus purpuratus] Length = 386 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 146/266 (54%), Gaps = 9/266 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKI-ICRKKY 88 I GGAVRD L QD+D AT PD++ +F+K ++I +GTI I K+ Sbjct: 98 IAGGAVRDLLTKKQPQDVDFATIATPDQMKEMFTKEGIRMINAKGEKHGTITARINDKEN 157 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 F+ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN+++ G + D+ G L Sbjct: 158 FEITTLRIDRVTDGRHAEVEFTTDWRTDAERRDLTINSMFLGLDGTLYDFFNGKEALERC 217 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAK-KGLKILSSERIW 206 I F+G+A RI EDYLRILR+FRF+ E N + + SI+ GL +S ERIW Sbjct: 218 HIAFVGNAATRIQEDYLRILRYFRFYGRIARESNKHTPETLQSIRENGHGLAGISGERIW 277 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L + I MY+ + + I + E L +L +V + Q ++L Sbjct: 278 MEVRKILTGNFAADLIHCMYDLDLARHIGIP-PEADLQELHKVYQRSQSLHPHPVTILSA 336 Query: 267 IVLISWQDKKSILSMAKKFSLPREIR 292 + ++D+ +L+M ++ + E R Sbjct: 337 L----FKDENDVLTMEQRMRISAEER 358 >gi|115929256|ref|XP_001187735.1| PREDICTED: similar to Chain A, Crystal Structure Of Human Cca-Adding Enzyme [Strongylocentrotus purpuratus] Length = 407 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 146/266 (54%), Gaps = 9/266 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKI-ICRKKY 88 I GGAVRD L QD+D AT PD++ +F+K ++I +GTI I K+ Sbjct: 98 IAGGAVRDLLTKKQPQDVDFATIATPDQMKEMFTKEGIRMINAKGEKHGTITARINDKEN 157 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 F+ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN+++ G + D+ G L Sbjct: 158 FEITTLRIDRVTDGRHAEVEFTTDWRTDAERRDLTINSMFLGLDGTLYDFFNGKEALERC 217 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAK-KGLKILSSERIW 206 I F+G+A RI EDYLRILR+FRF+ E N + + SI+ GL +S ERIW Sbjct: 218 HIAFVGNAATRIQEDYLRILRYFRFYGRIARESNKHTPETLQSIRENGHGLAGISGERIW 277 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ K+L + I MY+ + + I + E L +L +V + Q ++L Sbjct: 278 MEVRKILTGNFAADLIHCMYDLDLARHIGIP-PEADLQELHKVYQRSQSLHPHPVTILSA 336 Query: 267 IVLISWQDKKSILSMAKKFSLPREIR 292 + ++D+ +L+M ++ + E R Sbjct: 337 L----FKDENDVLTMEQRMRISAEER 358 >gi|313244235|emb|CBY15063.1| unnamed protein product [Oikopleura dioica] Length = 246 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 123/209 (58%), Gaps = 3/209 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKKYF 89 I GGA RD L+ DID+ATT PD ++ + K + I I +GT+ + + Sbjct: 33 IAGGAPRDLLLGKIPSDIDLATTATPDEMIEMLKKEKIDTINANGIKHGTVTAHIDEVNY 92 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN+++ G+VIDY G DL+ R Sbjct: 93 EITTLRIDKVTDGRHAEVQFTTDWRIDANRRDLTINSMFLTFDGEVIDYFNGQEDLKARK 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--SDGLVASIKAKKGLKILSSERIWS 207 I+F+G RI ED+LRILR+FRF++ +K + L+A + GL +S ERIWS Sbjct: 153 IQFVGHPEERIQEDFLRILRYFRFYSRISDKEDAHCKEHLLAIKENAAGLAGISGERIWS 212 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 EI K+L + ++Y G + IF Sbjct: 213 EIVKILNQPFDRFFVRYLYELGRVRIIFF 241 >gi|157110831|ref|XP_001651265.1| poly(a) polymerase [Aedes aegypti] gi|108883866|gb|EAT48091.1| poly(a) polymerase [Aedes aegypti] Length = 267 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 99/261 (37%), Positives = 142/261 (54%), Gaps = 7/261 (2%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTIKI-ICRKKYFDITTLRSDL 98 M +DIDIATT P + IF+K +++ +GTI I K+ F+ITTLR D Sbjct: 1 MGKCPKDIDIATTATPTEMKEIFNKENIRMVNMNGEKHGTITPRINDKENFEITTLRIDA 60 Query: 99 ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158 +TDGR+A+V+ T DW D+ RRD TIN+++ GKV DY G DL+ R + F+GD Sbjct: 61 VTDGRHAEVIHTTDWLLDANRRDLTINSMFLGFDGKVYDYFYGYEDLQKRRVAFVGDPDL 120 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKILSSERIWSEINKLLEAK 216 RI EDYLRILR+FRF+ E + + D I AK GL +S ERIW E K+L Sbjct: 121 RIKEDYLRILRYFRFYGRIAENDDNHDEETLRIIAKNAAGLAKISGERIWQEWKKILTGN 180 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDK 275 + + M N G+ + L Q + D+ V + E V + +I + L+ + Sbjct: 181 FGCDLTIRMINCGLAPHMGLPDQP-NTDEFKAVFKRVEAVHKDEIQPITVLSALLLVPED 239 Query: 276 KSILSMAKKFSL-PREIRYFL 295 L++ KF++ RE+ YFL Sbjct: 240 AITLNLRLKFTVFERELSYFL 260 >gi|331270840|ref|YP_004397277.1| PolyA polymerase family protein [Clostridium botulinum BKT015925] gi|329127558|gb|AEB77501.1| PolyA polymerase family protein [Clostridium botulinum BKT015925] Length = 440 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 15/241 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRDSL+ + D DI T+ LP++V+ IF YK+IPT + +GT+ I+ ++++ Sbjct: 25 IVGGCVRDSLLKKTPNDWDITTSALPNKVVDIFQNLGYKIIPTGLKHGTVTIVINNEHYE 84 Query: 91 ITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 +TT R D D R+ KV FTR+ K D RRDFTIN++ + + ++DY NDL + Sbjct: 85 VTTYRIDGEYEDNRHPKKVEFTRNLKEDLSRRDFTINSMAYNDKDGLVDYFNSKNDLESG 144 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 +K +GD R ED LRILR +RF A G I+ + L A+++ K LK +S ERI E Sbjct: 145 IVKSVGDPMKRFSEDALRILRAYRFAAQLGFV-IEDETLSATMQVKDNLKSISIERIRDE 203 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 I+K+L A N IF E+ V E+ L +L Q EQ + + ++ I Sbjct: 204 IDKMLLA-----------NSSIFFELSKFGVLEVILPELYQCFNVEQNNPYHVKNVFNHI 252 Query: 268 V 268 + Sbjct: 253 I 253 >gi|116491042|ref|YP_810586.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oenococcus oeni PSU-1] gi|116091767|gb|ABJ56921.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oenococcus oeni PSU-1] Length = 399 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 135/235 (57%), Gaps = 10/235 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVIP 72 + I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF + Y Sbjct: 11 EAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNY---- 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT + K +++TT R D D R+ K V FT++ K D RRDFTINA + Sbjct: 67 AGEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q+GK+ DY GLNDL+ + I+ +GDA R ED LRILR FRF + K I+ + L AS Sbjct: 127 QEGKLFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQLDFK-IEEETLRAS 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 K+ L +++ERI+ E +KLL KNP ++ MY+ GI FL E+ DQ Sbjct: 186 QMIKENLNDIATERIFVEFSKLLAGKNPQRSLRQMYDLGIVD--FLPGHELITDQ 238 >gi|253771292|ref|YP_003034142.1| poly A polymerase family protein [Clostridium botulinum D str. 1873] gi|253721444|gb|ACT33736.1| poly A polymerase family protein [Clostridium botulinum D str. 1873] Length = 470 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 137/239 (57%), Gaps = 5/239 (2%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRDSL+ D DI T+ LP+ V+ IF Y ++PT + +GT+ I+ + Sbjct: 52 EAYIVGGCVRDSLLEKKPNDWDITTSALPNEVINIFKNLGYTILPTGLKHGTVTIVINNE 111 Query: 88 YFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++++TT R D D R+ +V FTR+ K D RRDFTIN++ + + +IDY NDL Sbjct: 112 HYEVTTYRIDGEYEDNRHPNEVEFTRNLKEDLNRRDFTINSMAYNHKDGLIDYFNSKNDL 171 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +R IK +GD R ED LRILR +RF A K I++ L A+ + K LK +S ERI Sbjct: 172 DSRIIKCVGDPVKRFSEDALRILRAYRFAAQLDFK-IENKTLNATRQLKGNLKNISIERI 230 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 EINK+L + + +Y GI K IF ++ + + + + +F I+S+L Sbjct: 231 RDEINKILLTDSTI--FFQLYKFGILKIIFPELHQCHNVEQNSPYHMKNLFNHIINSVL 287 >gi|290890522|ref|ZP_06553597.1| hypothetical protein AWRIB429_0987 [Oenococcus oeni AWRIB429] gi|290479918|gb|EFD88567.1| hypothetical protein AWRIB429_0987 [Oenococcus oeni AWRIB429] Length = 399 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 135/235 (57%), Gaps = 10/235 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVIP 72 + I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF + Y Sbjct: 11 EAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNY---- 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT + K +++TT R D D R+ K V FT++ K D RRDFTINA + Sbjct: 67 AGEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q+G++ DY GLNDL+ + I+ +GDA R ED LRILR FRF + K I+ + L AS Sbjct: 127 QEGELFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQLDFK-IEEETLRAS 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 K+ L +++ERI+ E +KLL KNP ++ MY+ GI FL E+ DQ Sbjct: 186 QMIKENLNDIATERIFVEFSKLLAGKNPQRSLRQMYDLGIVD--FLPGHELITDQ 238 >gi|118586879|ref|ZP_01544313.1| polynucleotide adenylyltransferase [Oenococcus oeni ATCC BAA-1163] gi|118432711|gb|EAV39443.1| polynucleotide adenylyltransferase [Oenococcus oeni ATCC BAA-1163] Length = 399 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 129/220 (58%), Gaps = 8/220 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVIP 72 + I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF + Y Sbjct: 11 EAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNY---- 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT + K +++TT R D D R+ K V FT++ K D RRDFTINA + Sbjct: 67 AGEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q+G++ DY GLNDL+ + I+ +GDA R ED LRILR FRF + K I+ + L AS Sbjct: 127 QEGELFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQLDFK-IEEETLRAS 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 K+ L +++ERI+ E +KLL KNP ++ MY+ GI Sbjct: 186 QMIKENLNDIATERIFVEFSKLLAGKNPQRSLRQMYDLGI 225 >gi|195146334|ref|XP_002014141.1| GL23016 [Drosophila persimilis] gi|194103084|gb|EDW25127.1| GL23016 [Drosophila persimilis] Length = 351 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/198 (41%), Positives = 119/198 (60%), Gaps = 2/198 (1%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SI 75 ++LSL K + + I GGAVRD +M + +DID ATT PD++ +F+K ++I + Sbjct: 48 SLLSLFKKYDYEIRIAGGAVRDIIMGIKPKDIDFATTATPDQMKDMFTKENVRMINSKGE 107 Query: 76 SYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTI I K+ F++TTLR D+ T+GR+A VVFT DW+ D+ RRD TIN+++ G Sbjct: 108 KHGTITPRINGKENFEVTTLRIDVRTNGRHADVVFTTDWQLDANRRDLTINSMFLGFDGT 167 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 V DY G +DL+ R + F+GDA RI EDYLRILR+FRF+ + D + Sbjct: 168 VYDYFYGYDDLQQRRVVFVGDADIRINEDYLRILRYFRFYGRIAKDAESHDPQHLGRHQE 227 Query: 195 KGLKILSSERIWSEINKL 212 K LK+ + SE L Sbjct: 228 KTLKVWQGSAVDSEYTTL 245 >gi|158321388|ref|YP_001513895.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alkaliphilus oremlandii OhILAs] gi|158141587|gb|ABW19899.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alkaliphilus oremlandii OhILAs] Length = 450 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 122/399 (30%), Positives = 190/399 (47%), Gaps = 51/399 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRDS++N S QD DI T P+++M + S +KVIPT + +GT+ ++ ++ Sbjct: 31 IVGGCVRDSILNKSPQDWDICTNCTPEKMMELLSG--FKVIPTGLKHGTVTVVIDHVGYE 88 Query: 91 ITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 +TT R D DGR+ KV FT + D RRDFTINA+ + +IDY GG+ DL NR Sbjct: 89 VTTYRVDGDYRDGRHPEKVQFTASLREDLKRRDFTINAMAYHHKDGLIDYHGGMEDLWNR 148 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDGLVASIKAKKGLKILSSERIW 206 IK +G+ R EDYLR+LR RF A Y + G+ A + +S+ERI Sbjct: 149 KIKTVGNPLERFSEDYLRMLRAVRFSAQLDYTLEERTFQGIRA---LSHNIGKISTERIR 205 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQ-------------LSQVIEA 252 E+NK+L + P +V +++ + K I +++ + +Q LS V + Sbjct: 206 EELNKILMTEVPSRGLVLLHDTDLLKYILPELEVCVGFNQHSPHHDKDVFNHILSVVDQT 265 Query: 253 EQVFEWKIDSLLRFIV-------------------LISWQDKKSILSMAKKFSLPREIRY 293 E+ ++ +LL I + SW+ + I+ K + R I Sbjct: 266 EKDLILRLAALLHDIGKPETFSLDESGIGHFYRHHVASWKTAQKIMRRLKYDN--RTIDQ 323 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-- 351 L + LS IK+L M K+ +A + D +L + Sbjct: 324 VLALVKEHMTRYEKLSDKAIKRLISRVNPSNMHRLFKLQIADIGGSSKRNDISDVLDLKR 383 Query: 352 -LSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNIL 385 I+H K+PL ++G +++ G+P GKK+G IL Sbjct: 384 RAERILHEKQPLSIKDLEISGHHLMELGVPEGKKIGRIL 422 >gi|330813685|ref|YP_004357924.1| tRNA nucleotidyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327486780|gb|AEA81185.1| tRNA nucleotidyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 252 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 10/211 (4%) Query: 13 SDLINILSLLNK-GEDKSC---IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 + + I LLN G +++ VGG VRD ++ ++DID+AT+ P ++++I Sbjct: 9 PEAVKIYKLLNPLGSEENTPTKFVGGCVRDLILGHKIKDIDLATSFPPQKIVKILENENI 68 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K+ +I++G + F+ITTLR D + DGRYAK+ FT+DWK DS RRDFTINA+Y Sbjct: 69 KINIKAINFGVVTAYINNYLFEITTLRKDFLQDGRYAKIEFTKDWKLDSQRRDFTINAIY 128 Query: 129 ------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +++ ++ D G DL N IKFI +A I EDY+R LR+ RFF Y Sbjct: 129 CELNTKSNESFQLFDPHNGKEDLINGKIKFIKNAKTSINEDYVRALRYLRFFYSYSNYEH 188 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLL 213 D L + K +K LS R+ +E+ K++ Sbjct: 189 DPYVLEQIFENKNNIKNLSQNRLKTELKKII 219 >gi|146297248|ref|YP_001181019.1| tRNA adenylyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410824|gb|ABP67828.1| tRNA adenylyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 394 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 110/372 (29%), Positives = 185/372 (49%), Gaps = 20/372 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + ++ LN+ K+ +VGG +RD L+ + QD DIAT P+ VM++F KT IPT I Sbjct: 9 LQVIKRLNQHNFKAYLVGGCLRDYLLGTTPQDFDIATDAKPEDVMKLFEKT----IPTGI 64 Query: 76 SYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ +I ++TT R + R+ V FT D RRDFTINAL Sbjct: 65 KHGTVTVIINNVKIEVTTFRIEKEYQNHRWPTVEFTDSLYEDLKRRDFTINALAYHPDEG 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +IDY GL+DL+N+ ++ +G+ H R ED LRILR RF +ID + K Sbjct: 125 LIDYFNGLDDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLN-FSIDEKTFEGVVLLK 183 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 LK +S ERI +E++K+L +KN L I +Y G+ + + + I + E + Sbjct: 184 DLLKKISKERINAELSKILRSKNSLYGIKLLYESGVGETVIPEY--IKIYSFLHSTEFDL 241 Query: 255 VF-EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 + E+KI + ++D K + + + + + +++ CN+ + + Sbjct: 242 ILSEFKIPAF-----FACFRDPKKVEDIMRDLRFDK--KNIILATKLCNYLNSEYATEYL 294 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 K Y +K M + L++ + T + L+ + ++ K + GDD++K Sbjct: 295 VKKVYFEEEK-MPEGIISTLSILKKDKTLMELFSTLKAQNKLVSKKD--VKIKGDDLLKL 351 Query: 374 GIPPGKKVGNIL 385 G+ GK++GN+L Sbjct: 352 GL-KGKELGNVL 362 >gi|325971141|ref|YP_004247332.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta sp. Buddy] gi|324026379|gb|ADY13138.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta sp. Buddy] Length = 452 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 124/213 (58%), Gaps = 8/213 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGGAVRD L+ L ++D D T LPD+VM +F VIPT I +GT+ + K+ F+ Sbjct: 26 IVGGAVRDHLLGLKIEDYDFTTDALPDQVMHLFK----TVIPTGIEHGTVTVHFEKQSFE 81 Query: 91 ITTLRSDL-ITDGRY-AKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 +TT RS+ DGR+ + V F + + D RRDFTINA AD G ++D+ GG DL+N Sbjct: 82 VTTFRSEAEYLDGRHPSSVSFIPNLEEDLKRRDFTINAFAADCTNGHILDFHGGKEDLKN 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +TI+ IG+ R ED LRILR R A +ID + A + KK L +S+ERI Sbjct: 142 KTIRAIGNPIQRFEEDALRILRAARIAAKL-NFSIDDQTVSAMQEMKKNLSKVSAERIRD 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 E+ KL+ + +P + ++ GI I + ++ Sbjct: 201 ELFKLVLSNHPATGLTYLRTQGILTLIIPEFKQ 233 >gi|195343785|ref|XP_002038471.1| GM10595 [Drosophila sechellia] gi|194133492|gb|EDW55008.1| GM10595 [Drosophila sechellia] Length = 254 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 112/165 (67%), Gaps = 2/165 (1%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-P 72 +L ++L+L K + + I GGAVRD LM +S +DID+ATT PD++ ++F K ++I Sbjct: 75 ELNDLLALFKKYDYELRIAGGAVRDILMGISPKDIDLATTATPDQMKQMFEKEEVRMINA 134 Query: 73 TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GTI I K+ F++TTLR D+ TDGR+A+V++T DW+ D+ RRD TIN+++ Sbjct: 135 NGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSMFLGF 194 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 G V D+ G +DL+ R + F+G+A RI ED+LRILR+FRF+ Sbjct: 195 DGTVYDFFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGR 239 >gi|167747291|ref|ZP_02419418.1| hypothetical protein ANACAC_02005 [Anaerostipes caccae DSM 14662] gi|167653269|gb|EDR97398.1| hypothetical protein ANACAC_02005 [Anaerostipes caccae DSM 14662] Length = 449 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 125/450 (27%), Positives = 206/450 (45%), Gaps = 73/450 (16%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I++ L + ++ +VGG VRD ++ D DI T+ P +V IFS T I T I+ Sbjct: 12 QIINQLEQAGYEAYVVGGPVRDCILGKCPTDWDITTSASPYQVKEIFSYT----IDTGIA 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINALYAD 130 +GT+ ++ K+ F++TT R DG Y +V FT+ K D LRRDFTINA+ + Sbjct: 68 HGTVTVMMGKEPFEVTTYR----VDGEYRDHRRPEEVCFTKSLKEDLLRRDFTINAMAYN 123 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + + DY GG+ DL+ +TI+ +GDA R ED LRILR RF A G I+ + A Sbjct: 124 DRDGLTDYYGGVEDLKKKTIRCVGDARRRFDEDALRILRALRFQAQLG-FVIEEETKQAI 182 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248 K K LK +S+ERI +E+ KLL + +P I+ Y+ G+ K + + + + Sbjct: 183 QKQAKFLKDISAERIQTELTKLLLSDHP-ETILDAYDLGVTKVVLPEFDRMMETPQNNPH 241 Query: 249 ------VIEAEQVFEWKIDSLLRFIVLI----------------SWQDKKSILSMAKKFS 286 V E + + D +LR+ +L+ S+Q +I + Sbjct: 242 HCYNVGVHTVEALKNTEPDHILRWTMLLHDVGKPEARVEGKIKDSFQGHNTIGEEVSRKI 301 Query: 287 LPREIRYFLISFFNCNFNQKTL----------SIPEI-KKLFYLYGDKVMIAKLKIFLAL 335 L R + F N Q T S+ E+ KK + ++ + + L + Sbjct: 302 LKR------LKFDNQTIKQVTRLVYWHDVRFGSLDEVSKKTVRRWASRISVPLFEKLLKV 355 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLF---------------PLTGDDVVKYGIPPGKK 380 +++ Q T F+ + I+ + LF L G D++ G+ PG++ Sbjct: 356 QQADISAQST-FMQEEKQQILDRTRLLFEEIKEEEDCLQVKDLALDGKDLISLGMKPGRE 414 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +G +L + + + +E L +RK Sbjct: 415 IGEMLAGLLELVLEDPAKNKREVLEQAVRK 444 >gi|291295024|ref|YP_003506422.1| Polynucleotide adenylyltransferase region [Meiothermus ruber DSM 1279] gi|290469983|gb|ADD27402.1| Polynucleotide adenylyltransferase region [Meiothermus ruber DSM 1279] Length = 427 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 118/213 (55%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ + +D+D AT+ P+ VMR+ + IPT + +GT+ I+ ++ Sbjct: 19 LVGGAVRDILLGETPEDLDFATSAPPEVVMRLAKAQGLEAIPTGLEHGTVTILIDHHPYE 78 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 +TT R D+ T GR A+V + + + D RRDFTI A+ D G+VID GG DL + Sbjct: 79 VTTFRRDVETYGRKARVAWGQSIEEDLARRDFTIGAIAMDAAGRVIDPYGGQQDLEAGVL 138 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 + +GD R EDYLR++R RF A YG + A A + L ++ ER+ +E + Sbjct: 139 RAVGDPAQRFREDYLRVIRAGRFAARYGFEIEPRTLQAARAAAPEVLSHVAIERVTAEFD 198 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 K + P + ++Y+ I + + + ++ L Sbjct: 199 KAFQNGTPSRFLRYLYDLEILQRLIPEFEDTHL 231 >gi|320528618|ref|ZP_08029771.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Solobacterium moorei F0204] gi|320130984|gb|EFW23561.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Solobacterium moorei F0204] Length = 393 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/212 (38%), Positives = 130/212 (61%), Gaps = 6/212 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ LLN+ + +VGGA+R++L+ L + D D+ T PD ++++FS ++V+ T I + Sbjct: 12 LIDLLNQNHYSAYVVGGAIRNALLELPIHDYDLTTDATPDEMLQVFSS--HRVLKTGIQH 69 Query: 78 GTIKIICRKKYFDITTLRSDLI-TDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI ++ + + +ITT RS+ + D R+ + V+F+ + K D RRDFTINAL + + Sbjct: 70 GTITVLSKGQPVEITTFRSENVYEDHRHPSGVLFSDNIKEDCKRRDFTINALCYNNNEGL 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D+ GG+NDL N+ I+ IG+A+ RI ED LRILR RF I+ + A K K Sbjct: 130 LDFFGGVNDLSNKIIRCIGNANERIDEDALRILRALRFAGRLS-FTIEENTATAIHKQKD 188 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 L +S ERI SE +LE N L++I+ Y+ Sbjct: 189 LLHYISEERIHSEWIGILET-NALSSILTEYS 219 >gi|312381951|gb|EFR27559.1| hypothetical protein AND_05670 [Anopheles darlingi] Length = 350 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 146/287 (50%), Gaps = 17/287 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP- 72 +L ++++L + + I GGA D+DIATT P ++ IF+ +++ Sbjct: 62 ELKDLIALFKRYNYEIRIAGGA-----------DVDIATTATPTQMKDIFTTENIRMVNM 110 Query: 73 TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GTI I K+ F+ITTLR D++TDGR+A+VV T DW D+ RRD TIN+++ Sbjct: 111 NGEKHGTITPRINDKECFEITTLRLDVVTDGRHAEVVHTTDWLLDANRRDLTINSMFLGF 170 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVA 189 G + DY G DL+ R + F+GD RI EDYLRILR+FRF+ E D++ L Sbjct: 171 DGTLYDYFYGYEDLQKRRVAFVGDPDTRIKEDYLRILRYFRFYGRIAECANRHDAETLRI 230 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 GL +S ERIW E K+L M + L + ++D+ V Sbjct: 231 ITNNATGLAKISGERIWQEWKKILTGNFGTELTTEMIKCNLAVHCGLP-ESPNVDEFIHV 289 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFL 295 E + F K++ + L+ Q+ L+ + ++ RE+ YF+ Sbjct: 290 SENVRAFSGKLEPMTLVAALLHTQEDAIKLNSRLRLTVFERELIYFI 336 >gi|329767023|ref|ZP_08258551.1| hypothetical protein HMPREF0428_00248 [Gemella haemolysans M341] gi|328837748|gb|EGF87373.1| hypothetical protein HMPREF0428_00248 [Gemella haemolysans M341] Length = 386 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 115/203 (56%), Gaps = 7/203 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 INIL N+ ++ VGG VRD L+N DIDI T LP+ V +IF K+ I T I Sbjct: 14 INILEKFNEAGYEAYFVGGCVRDYLLNDEFSDIDITTNALPEEVKQIFRKS----IDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ I+ + F++TT R+ D I KV F D K D RRDFTINA+ D G Sbjct: 70 QHGTVTILVDEDSFEVTTFRTEDDYIDHRTPEKVEFVSDLKEDLDRRDFTINAMALDSNG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 K+ DY G DLRN+ IK + + + R ED LR+LR FRF + G + I+ + L A Sbjct: 130 KLYDYHCGERDLRNKVIKTVNNPNERFFEDALRMLRSFRFSSKLGFE-IEENTLKAIKNN 188 Query: 194 KKGLKILSSERIWSEINKLLEAK 216 + +K +S ERI +E KLL + Sbjct: 189 AELIKFVSIERIVNEFRKLLTGR 211 >gi|302871533|ref|YP_003840169.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor obsidiansis OB47] gi|302574392|gb|ADL42183.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor obsidiansis OB47] Length = 394 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 111/382 (29%), Positives = 192/382 (50%), Gaps = 34/382 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ +LN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F KT IP Sbjct: 6 NEPMKVIRILNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDAKPEDVIHLFEKT----IP 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 62 TGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF ID++ A Sbjct: 122 DEGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IDNETFEALK 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEISLD 244 K LK +S ERI E++K LE+KN + +Y + F +I+L + ++ D Sbjct: 181 SLKDLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSVIIPEFLQIYLYLSQVEFD 240 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 + + F D+ L ++ + + +S+A K CN+ Sbjct: 241 FIPTKFKVPAFFACLKDNTLIEKLMRDLKFDRRNISLAIKL---------------CNYL 285 Query: 305 QKTLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 ++ + E IK++F + ++ + + +++ N+ +T IL+ + +I K Sbjct: 286 KRHYNTEELIKRIF--FEEEENVEDIIFTMSILKNDTKITETFDILKKQNRLIRKKD--V 341 Query: 364 PLTGDDVVKYGIPPGKKVGNIL 385 + G+D++K G+ GK++G L Sbjct: 342 KINGNDLLKLGL-KGKEIGKTL 362 >gi|323339898|ref|ZP_08080167.1| poly A polymerase [Lactobacillus ruminis ATCC 25644] gi|323092771|gb|EFZ35374.1| poly A polymerase [Lactobacillus ruminis ATCC 25644] Length = 400 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 47/396 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D I+ + + ++ VGG+VRD+L+ L + D+DIAT+ P + +IF KT + T Sbjct: 12 DAKPIIETIKQAGFEAYFVGGSVRDTLLGLPIHDVDIATSAYPREIKKIFKKT----VDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R++ R V F R + D RRD TINA D+ Sbjct: 68 GIQHGTVMVLDHGEGYEITTFRTESTYQDFRRPDHVTFVRSLEEDLKRRDLTINAFAMDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGL 187 G+VID GL+DL+N+ +K +GDAH R ED LR++R RF + EK + G Sbjct: 128 TGRVIDMFDGLSDLQNKRLKAVGDAHERFHEDALRMMRTIRFASQLDFKIEEKTFQALGE 187 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK---------EIFLDV 238 A++ L+ ++ ERI E KLL KNP + Y +++ E F ++ Sbjct: 188 NAAL-----LEKIAVERIHVEWIKLLMGKNPGCGLSAFYETKLYQHCPMFSKYGETFNEL 242 Query: 239 QEISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + L ++ IEA + + K+D +L +W+ ++ +K E Sbjct: 243 SKRKL-EIQDEIEAWTLLSYCLKMDGKDSAKLLRAWKSSNETIAQTEKAVAALE------ 295 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-NLTHQDTCFILQVLSDI 355 S + + TL Y G+ LK LA+ +T + I + Sbjct: 296 SIADRRVTRFTL---------YNAGE----TGLKTALAVAKQMEITVDEDKLIHDYRTLP 342 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 I KK L GD + + GI PG K+G IL + ++E Sbjct: 343 IKSKKDLKANGGDLIKEAGIKPGPKMGEILDYLEEE 378 >gi|46445774|ref|YP_007139.1| putative poly A polymerase [Candidatus Protochlamydia amoebophila UWE25] gi|46399415|emb|CAF22864.1| putative poly A polymerase [Candidatus Protochlamydia amoebophila UWE25] Length = 412 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 110/410 (26%), Positives = 205/410 (50%), Gaps = 25/410 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L K + GG VRD +M +DIDIAT P ++M IF T + +++ Sbjct: 10 IVTKLVKAGHTAYFAGGWVRDYVMGHPSEDIDIATDATPAQIMDIFPNT----LLVGLAF 65 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 G + ++ F++ T R DL DGR+ + + D+LRRDFTIN ++ D +VI Sbjct: 66 GVVIVVWEGHQFEVATFRKDLDYVDGRHPSGIVLSTAREDALRRDFTINGMFYDPLKEVI 125 Query: 137 -DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAK 194 D+V G D+R I+ IG+ H R ED LR+LR FRF A +G +++ + A+ Sbjct: 126 YDFVNGQEDIRRHLIRAIGNPHERFQEDRLRMLRAFRFSARFGFAIELETQQAIFE-NAE 184 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + ++ ERIW E K+ AIV M+ + IF +++ + +++L ++EA + Sbjct: 185 QLFPAVAIERIWQEFKKMAMYPCFDQAIVEMHRLTLLDVIFPELKGLPINELRHLVEAYK 244 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQ-----KTL 308 F ++ IVL+ +++ + +AK+ + R+++ L+ +F + NQ K Sbjct: 245 RFPKNCATIFYLIVLMPRLNREEKIEVAKRLKVTNRDLK--LLHYFE-DLNQLIKKEKEN 301 Query: 309 SIPEIKKLFYLYGDK---VMIAKLKIFLALHYNN---LTHQDTCFILQVLSDIIHWKKPL 362 + ++ + + +++ + L+ N + ++ L+ + I K PL Sbjct: 302 GLEDLYPWAHALANPDFSIVVEVIAATFPLNKGNELLIQLKNRFEKLKSHIERIQQKTPL 361 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++ + GI GK++G +L ++ IN+ +Q SQ L+ L + ++ Sbjct: 362 --ISSALLQANGISAGKQMGILLTEAEKLAINNDYQDSQTVLNALKQTML 409 >gi|302875215|ref|YP_003843848.1| Polynucleotide adenylyltransferase region [Clostridium cellulovorans 743B] gi|307688896|ref|ZP_07631342.1| Polynucleotide adenylyltransferase region [Clostridium cellulovorans 743B] gi|302578072|gb|ADL52084.1| Polynucleotide adenylyltransferase region [Clostridium cellulovorans 743B] Length = 454 Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 111/421 (26%), Positives = 200/421 (47%), Gaps = 67/421 (15%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ +L + ++ IVGG VRDS++ + +D DI T+ P+ ++ +F+ +PT I + Sbjct: 16 IVGILYRSNHEAFIVGGCVRDSILGIKPKDWDITTSAEPEEIIELFNSEGCTTVPTGIKH 75 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI ++ K+ F+ITT R D D R+ ++V FT+ + D RRD+TINA+ + + + Sbjct: 76 GTITVVIEKEPFEITTYRIDGEYKDSRHPSEVKFTKSLEEDLKRRDYTINAMAYNDKVGL 135 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY G D+ + I+ +G+ R+ ED LR+LR RF A G K I+ + A Sbjct: 136 VDYFNGQEDIDKKLIRAVGEPKKRLEEDALRMLRAHRFSAQLGFK-IEKETSEAIKALSV 194 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------------Q 239 ++ +S ERI E NK+L + N L + +Y G+ + F ++ Sbjct: 195 NIRQVSIERIREEFNKILLSNN-LVQLFQLYENGLLQHFFGELANCFERSKKKGDISIYS 253 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + L +L Q IE E W I L+ +I S+ + +++ P + +Y S Sbjct: 254 HVYLIELLQSIEKELSLRWAI--LINYINEFSYNLEDTLVK-------PNQCKYSTTS-Q 303 Query: 300 NCNFN------------QKTLSIPEIKKLFYLYGDKVMIAKL---------KIFLALHYN 338 +C N ++ L + + +++ + DKV I ++ K + + Sbjct: 304 DCASNILKRMKYDNKTIERVLVLAKYQEV--IISDKVAIKRILNTTGIENFKALVEIKEA 361 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPL--------------TGDDVVKYGIPPGKKVGNI 384 + Q I + + +I+ K+ + + G+D++K G+ PGK +G I Sbjct: 362 KIKLQSENDINEGMKEIVRIKEEFYEIISSNQCFTIKDLAVKGEDIIKLGVKPGKFIGEI 421 Query: 385 L 385 L Sbjct: 422 L 422 >gi|317471034|ref|ZP_07930409.1| poly A polymerase head domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901475|gb|EFV23414.1| poly A polymerase head domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 449 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 125/450 (27%), Positives = 206/450 (45%), Gaps = 73/450 (16%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I++ L + ++ +VGG VRD ++ D DI T+ P +V IFS T I T I+ Sbjct: 12 QIINQLEQAGYEAYVVGGPVRDCILGKCPTDWDITTSASPYQVKEIFSYT----IDTGIA 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINALYAD 130 +GT+ ++ K+ F++TT R DG Y +V FT+ K D LRRDFTINA+ + Sbjct: 68 HGTVTVMMGKEPFEVTTYR----VDGEYRDHRRPEEVCFTKSLKEDLLRRDFTINAMAYN 123 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +IDY GG DL+ +TI+ +GDA R ED LRILR RF A G I+ + A Sbjct: 124 DRDGLIDYYGGAEDLKKKTIRCVGDARRRFDEDALRILRALRFQAQLG-FVIEEETKQAI 182 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248 K K LK +S+ERI +E+ KLL + +P I+ ++ G+ K + + + + Sbjct: 183 QKQAKFLKDISAERIQTELTKLLLSDHP-ETILDAFDLGVTKVVLPEFDRMMETPQNNPH 241 Query: 249 ------VIEAEQVFEWKIDSLLRFIVLI----------------SWQDKKSILSMAKKFS 286 V E + + D +LR+ +L+ S+Q +I + Sbjct: 242 HCYNVGVHTVEALKNTEPDHILRWTMLLHDVGKPEARVEGKIKDSFQGHNTIGEEVSRKI 301 Query: 287 LPREIRYFLISFFNCNFNQKTL----------SIPEI-KKLFYLYGDKVMIAKLKIFLAL 335 L R + F N Q T S+ E+ KK + ++ + + L + Sbjct: 302 LKR------LKFDNQTIKQVTRLVYWHDVRFGSLDEVSKKTVRRWVSRISVPLFEKLLKV 355 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLF---------------PLTGDDVVKYGIPPGKK 380 +++ Q T F+ + I+ + LF L G D++ G+ PG++ Sbjct: 356 QQADISAQST-FMQEEKQQILDRTRLLFEEIKEEKDCLQVKDLALDGKDLISLGMKPGRE 414 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +G +L + + + +E L +RK Sbjct: 415 IGEMLAGLLELVLEDPAKNKREVLEQAVRK 444 >gi|255525052|ref|ZP_05391998.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium carboxidivorans P7] gi|296187402|ref|ZP_06855797.1| uncharacterized domain HDIG containing protein [Clostridium carboxidivorans P7] gi|255511308|gb|EET87602.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium carboxidivorans P7] gi|296047924|gb|EFG87363.1| uncharacterized domain HDIG containing protein [Clostridium carboxidivorans P7] Length = 460 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 132/235 (56%), Gaps = 4/235 (1%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 HK F D +I+ +L +S +VGG VRDSL+N +D D+ T LP++ + IF Sbjct: 4 HKIFIPQDTKHIMKILKNKGYESYVVGGCVRDSLINREPKDWDLTTNALPEQTLEIFKTE 63 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTI 124 ++VI T I +GT+ I+ +++TT R D D R+ V FT K D RRDFTI Sbjct: 64 GFRVIETGIKHGTVTILMNGNPYEVTTYRVDGEYLDNRHPDNVTFTTSLKEDLSRRDFTI 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 N++ ++ +IDY G++DL+++ I+ +G+A R ED LR+LR RF + E +D Sbjct: 124 NSMAYNEDKGLIDYFNGISDLKSKIIRCVGNADERFNEDALRMLRAVRFSSEL-EFKLDF 182 Query: 185 DGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +G ++IK L + +S ERI E K+L + P N ++ + + + I ++ Sbjct: 183 EGTFSAIKKNCNLIRNISVERIREEFCKILISHKPSNGVLALKETNLLEYILPEI 237 >gi|313902546|ref|ZP_07835947.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermaerobacter subterraneus DSM 13965] gi|313467232|gb|EFR62745.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermaerobacter subterraneus DSM 13965] Length = 610 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 131/243 (53%), Gaps = 8/243 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL L++ + +VGG VRD LM +D D+AT PD V R+F +T IPT I Sbjct: 161 EILQRLDQHGYGAFLVGGCVRDLLMARPPKDWDVATAARPDEVRRLFPRT----IPTGIE 216 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ + R ++TT R + +D R+ +V FTRD +AD RRD TINA+ D QG+ Sbjct: 217 HGTVTVRLRGMSVEVTTFRQEAGYSDHRHPDRVEFTRDLRADLERRDLTINAMALDHQGR 276 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D +GGL+DL ++ +GD R ED LR+LR RF A G + ++ A + Sbjct: 277 LHDPLGGLDDLEQGLVRAVGDPEERFREDALRLLRVVRFAARLGYR-VEPRTGAALARCA 335 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 ++ +S ERI E+ LL + P + + G+ + I+ ++ E +D V A Sbjct: 336 SLIRHVSWERIREEMAGLLTSPRPAWGLELLRTSGLLEPIWPELLE-GVDVPQNVHHAYT 394 Query: 255 VFE 257 V+E Sbjct: 395 VWE 397 >gi|257065886|ref|YP_003152142.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Anaerococcus prevotii DSM 20548] gi|256797766|gb|ACV28421.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Anaerococcus prevotii DSM 20548] Length = 450 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 128/415 (30%), Positives = 194/415 (46%), Gaps = 61/415 (14%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 NI+ L + KS VGGAVRDSL++ V DIDI T P+ + +F +K+I Sbjct: 11 NIIERLKEAGFKSFPVGGAVRDSLLSREVSDIDITTDARPEEIEEVFRD--FKLIDIGKR 68 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTIK+I + F+ITT R + DGR+ +V F+ + D RRDFTINA+ DQ G+ Sbjct: 69 FGTIKVIIEGEAFEITTFRKESAYRDGRHPTEVRFSDNLIDDLERRDFTINAMAFDQ-GE 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG +DL + I+ +GDA RI ED LR LR RF G +S L +I+ Sbjct: 128 IIDPFGGRDDLSMKVIRAVGDARERIDEDLLRSLRAVRFANRLGFTIEES--LKEAIREN 185 Query: 195 KG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVIEA 252 + +S ERI SE++++L + P + I M G+ EIF +V+ + DQ S + Sbjct: 186 ANKINSISQERIASELSEILTSATPSSGIRLMDEVGLLAEIFPEVKRTVGFDQHSSY-HS 244 Query: 253 EQVFEWKI--------DSLLRFIVLIS--------WQDKKSILSMAKKFSLPREI---RY 293 + V+ + D +RF L + D++ +L E+ R Sbjct: 245 DDVYNHSLKVLDKSPADLAVRFSALYHDVGKVYTFFLDERGEGRFFGHQNLSEEMLRKRL 304 Query: 294 FLISFFN---------------CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + F N C+ T + I+KL G+ L+ L Sbjct: 305 KELKFSNKFIDDATSLVKRHMDCS---NTYTKKSIRKLLRRLGE----GNLRQLFDLQRA 357 Query: 339 NL---THQDTCFI-------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 ++ H DT I +VL D I K+ + G+D++ G P GK +G+ Sbjct: 358 DILSTKHPDTSNIDLGEEILTEVLKDNIPKKRSELAIDGNDLISMGYPQGKIIGD 412 >gi|74189230|dbj|BAE22664.1| unnamed protein product [Mus musculus] Length = 215 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/159 (42%), Positives = 98/159 (61%), Gaps = 1/159 (0%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L ++ L K + I GGAVRD L + QD+D ATT P ++ +F ++I Sbjct: 45 LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNK 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G Sbjct: 105 GEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDG 164 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + DY G DL+N+ ++F+G A RI EDYLRILR+FR Sbjct: 165 TLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFR 203 >gi|329770481|ref|ZP_08261859.1| hypothetical protein HMPREF0433_01623 [Gemella sanguinis M325] gi|328836230|gb|EGF85899.1| hypothetical protein HMPREF0433_01623 [Gemella sanguinis M325] Length = 413 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 120/202 (59%), Gaps = 7/202 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L ++NK +S VGG VRD ++N + DIDI T LP+ + IFSKT I T I Sbjct: 44 IEVLEIINKAGFESYFVGGCVRDYILNKNFSDIDITTNALPEEIKEIFSKT----IDTGI 99 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R+ D ++ R KV F + K D RRDFTINA+ D +G Sbjct: 100 QHGTVTVLYKNNSYEITTFRTEDNYSNHRSPDKVEFVNNLKDDLDRRDFTINAMALDIKG 159 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D+ G+ND+ N+ IK + + + R ED LR++R FRF + G +I+++ A K Sbjct: 160 YIYDFHSGVNDITNKIIKTVNNPNERFFEDALRMIRAFRFSSKLG-FSIENNTFNAICKN 218 Query: 194 KKGLKILSSERIWSEINKLLEA 215 K ++ +S ERI +E KL E Sbjct: 219 SKLIEYVSIERIITEFKKLFEG 240 >gi|312135461|ref|YP_004002799.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor owensensis OL] gi|311775512|gb|ADQ04999.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor owensensis OL] Length = 394 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 190/378 (50%), Gaps = 32/378 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I ++ LN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F KT IPT I Sbjct: 9 IKVIRTLNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDARPEDVIHLFEKT----IPTGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 65 KHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHPDEG 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +IDY GG+ DL+++ ++ +G+ + R ED LRILR RF I+++ A K Sbjct: 125 LIDYFGGIEDLKSKIVRCVGNPNERFFEDALRILRCIRFATQLSFV-IENETFEALKSLK 183 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEISLDQLS 247 LK +S ERI E++K LE+KN + +Y G+ F +I+L + ++ D + Sbjct: 184 DLLKKISKERINIELSKTLESKNSSYGLELLYESGVGSIIIPEFSQIYLYLSQVGFDFIP 243 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 + F D LL ++ + + +S+A K L ++ ++N + Sbjct: 244 TKFKVPAFFACLKDGLLVEKLMRDLKFDRRNISLAIK----------LCNYLKMHYNAEE 293 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 L IK++F + ++ + + +++ N+ +T IL+ + +I K + G Sbjct: 294 L----IKRIF--FEEEENVEDIIFTMSILKNDTKITETFDILKKQNRLIRKKD--VKING 345 Query: 368 DDVVKYGIPPGKKVGNIL 385 D++K G+ G+++G L Sbjct: 346 KDLLKMGL-KGEEIGKTL 362 >gi|309808110|ref|ZP_07702026.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus iners LactinV 01V1-a] gi|308168646|gb|EFO70748.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus iners LactinV 01V1-a] Length = 397 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 115/381 (30%), Positives = 187/381 (49%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 16 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 72 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 132 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 191 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 250 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 251 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 303 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYESLPLKNESELVIDGNY 355 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G ILV K+ Sbjct: 356 LLKKGIPAGPRIGEILVEIKK 376 >gi|194041294|ref|XP_001925304.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like, partial [Sus scrofa] Length = 202 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 65/142 (45%), Positives = 91/142 (64%), Gaps = 1/142 (0%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 61 IAGGAVRDLLSGVKPQDVDFATTATPVQMKELFQSVGIRMINNKGEKHGTITARLHEENF 120 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + DY G DL+N+ Sbjct: 121 EITTLRVDVATDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180 Query: 150 IKFIGDAHHRILEDYLRILRFF 171 ++F+G A RI EDYLRILR+F Sbjct: 181 VRFVGQAKQRIQEDYLRILRYF 202 >gi|317120984|ref|YP_004100987.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermaerobacter marianensis DSM 12885] gi|315590964|gb|ADU50260.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermaerobacter marianensis DSM 12885] Length = 610 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L+ L + + +VGG VRD LM +D D+AT+ P+ V RIF +T IPT I Sbjct: 156 EVLTRLGEHGHAAYLVGGCVRDLLMARPPKDWDVATSARPEEVRRIFPRT----IPTGIE 211 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ + R ++TT R + +D R+ +V FTRD +AD RRD TINA+ D +G+ Sbjct: 212 HGTVTVRARGLSVEVTTFRQESGYSDFRHPDRVEFTRDLRADLERRDLTINAMALDAEGR 271 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D +GGL DL ++ +GD R ED LR+LR RF A +G + ++ A + Sbjct: 272 LHDPLGGLADLEAGVVRAVGDPDERFREDALRLLRVVRFAARFGYR-VEPRTEAALARCA 330 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ +S ERI E++ LL + P + + G+ + I+ ++ E Sbjct: 331 PLIRHVSWERIREEMSGLLVSPRPAWGLELLRTSGLLEPIWPELLE 376 >gi|304406910|ref|ZP_07388564.1| Polynucleotide adenylyltransferase region [Paenibacillus curdlanolyticus YK9] gi|304343897|gb|EFM09737.1| Polynucleotide adenylyltransferase region [Paenibacillus curdlanolyticus YK9] Length = 451 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 116/205 (56%), Gaps = 7/205 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG VRD + S+ DIDIAT LPD VM +F +T +PT + Sbjct: 16 LPVLHTLEHAGYEAVFVGGCVRDVIAGRSITDIDIATAALPDVVMSLFERT----VPTGL 71 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ +I ++ +++TT RS+ + R V F + + D LRRDFTINA+ G Sbjct: 72 QHGTVTVIVDERTYEVTTYRSEADYEDYRRPTDVAFIAELEGDLLRRDFTINAMALRSNG 131 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D GGL DLR I+ +G A R ED LR++R RF + +G I A ++ Sbjct: 132 TLVDPYGGLTDLRRGRIRCVGQAEERFREDALRMVRAVRFASTFG-YAIAPSAWRALLRN 190 Query: 194 KKGLKILSSERIWSEINKLLEAKNP 218 ++ L+ ++ ERI +E++K++ P Sbjct: 191 RELLRYVAMERIGAELDKMIGGAGP 215 >gi|330836490|ref|YP_004411131.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta coccoides DSM 17374] gi|329748393|gb|AEC01749.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta coccoides DSM 17374] Length = 475 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 111/191 (58%), Gaps = 8/191 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGGAVRD L+ + +D D AT +P+ VM F +KVIPT I +GT+ ++ RK+ ++ Sbjct: 42 IVGGAVRDWLLGIRNEDFDFATDAMPEEVMDTF----HKVIPTGIKHGTVTVLFRKQQYE 97 Query: 91 ITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 +TT R D +DGR+ V F R+ + D RRDFTINAL + G + D G+ DL+ Sbjct: 98 VTTFRVDGDYSDGRHPDSVAFVRNLEQDLARRDFTINALAVNAYTGVLTDLHDGIGDLKR 157 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IGD R+ ED LRI+R RF G I+ A K GL+ +S ERI Sbjct: 158 KVIRAIGDPEARLSEDALRIVRACRFAGKLG-FAIEDKTFTAMKKLSPGLEAVSGERIHE 216 Query: 208 EINKLLEAKNP 218 E++++L P Sbjct: 217 ELSRMLLGARP 227 >gi|154484258|ref|ZP_02026706.1| hypothetical protein EUBVEN_01970 [Eubacterium ventriosum ATCC 27560] gi|149734735|gb|EDM50652.1| hypothetical protein EUBVEN_01970 [Eubacterium ventriosum ATCC 27560] Length = 457 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 135/239 (56%), Gaps = 16/239 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ +L ++ VGG VRD++++ QD DI T+ LP++V +F++T + T I + Sbjct: 21 IIDVLENNGYEAFAVGGCVRDTILDREPQDWDITTSALPEQVKELFNRT----LDTGIQH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT R D D R+ + V FT + D RRDFTINA+ +++ + Sbjct: 77 GTVTVMIKHVGYEVTTYRIDGEYNDSRHPESVEFTSNLIEDLKRRDFTINAMAYNEREGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ND+ N+ I+ +G+ R ED LRILR RF A G +ID + A K Sbjct: 137 VDAFDGINDINNKIIRCVGEPEERFGEDALRILRAVRFSAQLG-FDIDEKTMEAIKKLAP 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L+ +S+ERI +E+ KL+ +KNP I YN GI K I L + ++E EQ Sbjct: 196 TLENISAERIKTELEKLIISKNPCKLIT-AYNAGITKVI--------LPEFDAMMECEQ 245 >gi|332977064|gb|EGK13868.1| polyA polymerase family protein [Desmospora sp. 8437] Length = 411 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGG VRD L+ D D+ T P +V +F+KT + T I Sbjct: 9 LQVLERLEEAGFQAYWVGGCVRDELLGREPTDYDVTTDAPPGKVQSLFAKT----VATGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++ ++TT R + D R+ +V F + + D RRDFTINA+ D++G Sbjct: 65 RHGTVTVLIQRQAVEVTTFREETGYEDHRHPGQVQFVKRLEMDLARRDFTINAMARDRRG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GG DLR++ ++ +G+A R ED LR++R RF A G + +D A I+ Sbjct: 125 RLIDPFGGRKDLRSQVVRAVGEAEERFREDALRMVRALRFCAQLGFR-LDEQTEAALIRQ 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K L+ L+ ER+ E+ KL P I ++ G+F + Sbjct: 184 KSLLRHLAVERVTQELEKLWATDKPSQGIRPLWEMGLFPHL 224 >gi|312622082|ref|YP_004023695.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor kronotskyensis 2002] gi|312202549|gb|ADQ45876.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor kronotskyensis 2002] Length = 394 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 130/238 (54%), Gaps = 7/238 (2%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ LLN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F KT IP Sbjct: 6 NEPMKVIKLLNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDAKPEDVIHLFEKT----IP 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 62 TGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++ A Sbjct: 122 DEGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IENKTFEALK 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK +S ERI E++K LE+KN + +Y + I + +I L LSQV Sbjct: 181 SLKHLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYL-YLSQV 237 >gi|327470124|gb|EGF15588.1| polyA polymerase family protein [Streptococcus sanguinis SK330] Length = 399 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 113/377 (29%), Positives = 189/377 (50%), Gaps = 49/377 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ S+ D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRSIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R FRF A + +++ D VA L+ +S ERI Sbjct: 142 ENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEAK---NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 + E +KLL A L A+ + +G I E D++E S +L ++ + F + Sbjct: 201 FIEFDKLLLAPFWHKGLEAL--LTSGAI--EFLPDLKE-SRAKLERLFDLASDFRFSASE 255 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI--------- 313 +L++ D +++ KK+ RE F +K + EI Sbjct: 256 QAWSAILLAL-DVQNVKGFLKKWKTSRE------------FAKKVEDLIEIAVIRSERDL 302 Query: 314 -KKLFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 K+ Y Y +++ ++ L++ ++ + + D IH K+ + G Sbjct: 303 TKRDCYDYDIDLLLQAEELREAQGLSVDFSAIQNLDASL-------TIHSKQEMVVNGGM 355 Query: 369 DVVKYGIPPGKKVGNIL 385 + ++G PG K+G IL Sbjct: 356 LMREFGFEPGPKLGQIL 372 >gi|309805741|ref|ZP_07699781.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 09V1-c] gi|308164994|gb|EFO67237.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 09V1-c] Length = 397 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 114/381 (29%), Positives = 187/381 (49%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 16 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 72 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 132 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 191 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 250 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 251 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 303 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +LV K+ Sbjct: 356 LLKQGIPAGPRIGELLVEIKK 376 >gi|312871384|ref|ZP_07731479.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 3008A-a] gi|311093037|gb|EFQ51386.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 3008A-a] Length = 397 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 188/381 (49%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 16 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 72 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 132 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L+ +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 191 LLRKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 250 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 251 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 303 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +L+ K+ Sbjct: 356 LLKKGIPAGPRIGELLIEIKK 376 >gi|312872366|ref|ZP_07732436.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2062A-h1] gi|312874002|ref|ZP_07734038.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2052A-d] gi|329921299|ref|ZP_08277737.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 1401G] gi|311090551|gb|EFQ48959.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2052A-d] gi|311092189|gb|EFQ50563.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2062A-h1] gi|328934591|gb|EGG31095.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 1401G] Length = 397 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 114/381 (29%), Positives = 187/381 (49%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 16 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 72 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 132 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 191 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 250 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 251 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 303 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +LV K+ Sbjct: 356 LLKKGIPAGPRIGELLVEIKK 376 >gi|327474160|gb|EGF19570.1| polyA polymerase family protein [Streptococcus sanguinis SK408] Length = 399 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 138/236 (58%), Gaps = 15/236 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ ++ Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENRR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGHVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +NR ++ +G A R ED LRI+R FRF A + +++ D VA L+ +S ERI Sbjct: 142 KNRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA---KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 + E +KLL A + L A+ + +G I E D++E S +L ++ E + F + Sbjct: 201 FIEFDKLLLAPFWRKGLEAL--LTSGAI--EFLPDLKE-SRAKLERLFELDSEFRF 251 >gi|331087228|ref|ZP_08336298.1| hypothetical protein HMPREF0987_02601 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408914|gb|EGG88375.1| hypothetical protein HMPREF0987_02601 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 444 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 119/422 (28%), Positives = 201/422 (47%), Gaps = 70/422 (16%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L + ++ VGG VRDSL+ D DI T+ PD ++F++T + T I Sbjct: 11 TIIQTLQEHGYEAYAVGGCVRDSLLGREPGDWDITTSASPDETKKLFART----VDTGIE 66 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINAL-YA 129 +GT+ ++ K+ F++TT R DG+Y +V+FTR+ + D LRRDFTINA+ Y Sbjct: 67 HGTVTVLLGKEGFEVTTYR----IDGKYEDSRHPTEVIFTRNLREDLLRRDFTINAMAYN 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D +G ++D GG++DL+ + I+ +G+A R ED LRI+R RF A G +++ + A Sbjct: 123 DTEG-IVDIFGGMDDLKRKIIRCVGNARERFGEDALRIMRGVRFAAQLG-FSLEKETKEA 180 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEIS 242 + L+ +S+ERI +E+ KLL + +P I Y+ GI F E+ QE Sbjct: 181 MTELAPTLEKISAERIQTELVKLLVSDSP-ELIREAYHLGITAVILPEFDEMMRTGQETK 239 Query: 243 ---LDQLSQVIEAEQVFEWKIDSLLRFIVL---ISWQDKKSILSMAKKFSLPREIR---- 292 D ++A V D +LR +L ++ + K++ + +IR Sbjct: 240 YHRYDVGEHTVQA--VCNVPPDKVLRLTMLLHDVAKPEMKTVDADGTAHFKGHDIRGEQK 297 Query: 293 ----YFLISFFNCNFNQKT-------LSIPEIKK------------LFYLYGDKVMIAKL 329 + F N ++ T +P KK LF +Y +++ + Sbjct: 298 AKEILRRLKFDNDTIHKVTKLVRWHDYRMPAEKKNVRKAMSKISAELFPMY---LLVKRA 354 Query: 330 KIFLALHY------NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 I Y NL+ C+ ++++D +TG D++ G+ PGK++G Sbjct: 355 DILAHSMYRREEELENLSGLQKCY-EEIVADHECVSLKQLAVTGTDLIGIGMKPGKQIGE 413 Query: 384 IL 385 +L Sbjct: 414 VL 415 >gi|251796453|ref|YP_003011184.1| polynucleotide adenylyltransferase region [Paenibacillus sp. JDR-2] gi|247544079|gb|ACT01098.1| Polynucleotide adenylyltransferase region [Paenibacillus sp. JDR-2] Length = 417 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 122/209 (58%), Gaps = 7/209 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L + ++ VGG VRD+ M L ++D+DIAT+ P++VM IF + IPT + Sbjct: 15 IPVLEALVQQGFEAVFVGGCVRDTAMGLPIKDVDIATSARPEQVMSIFPR----CIPTGL 70 Query: 76 SYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++TT R S+ R +V F D LRRD TINA+ + G Sbjct: 71 QHGTVTVLHDGGSYEVTTFRTESEYEKHRRPLQVEFIDRLDGDLLRRDLTINAMAMNAAG 130 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ D GLNDL+NRTI+ +GDA R ED LR+LR RF + + E I A ++ Sbjct: 131 ELYDPFRGLNDLKNRTIRCVGDADARFQEDALRMLRTIRFASQF-EFTIAHTTWRALVRH 189 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAI 222 ++ L+ ++ ER+ +E+++++ +P A+ Sbjct: 190 RELLRHIAMERVHAELDRMIGGAHPGRAL 218 >gi|312127262|ref|YP_003992136.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor hydrothermalis 108] gi|311777281|gb|ADQ06767.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor hydrothermalis 108] Length = 394 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 126/235 (53%), Gaps = 7/235 (2%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + ++ LN+ K+ +VGG VRD L+ QD DIAT P+ V+ +F KT IPT I Sbjct: 9 MKVIRTLNQHGFKAYLVGGCVRDYLLGKEPQDFDIATDAKPEDVIHLFEKT----IPTGI 64 Query: 76 SYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ +I ++TT R + R+ KV F D RRDFTINA+ Sbjct: 65 KHGTVTVIINGVKIEVTTFRIEKEYKNHRWPKVEFINSLFEDLRRRDFTINAMAYHPDEG 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I+++ A K Sbjct: 125 LIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFVTQLSFV-IENETFEALKSLK 183 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 LK +S ERI E++K LE+KN + +Y G+ I + +I L LSQV Sbjct: 184 DLLKKISKERINIELSKTLESKNSSYGLKLLYESGVGSIIISEYSQIYL-YLSQV 237 >gi|325663707|ref|ZP_08152111.1| hypothetical protein HMPREF0490_02852 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470200|gb|EGC73433.1| hypothetical protein HMPREF0490_02852 [Lachnospiraceae bacterium 4_1_37FAA] Length = 444 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 119/422 (28%), Positives = 201/422 (47%), Gaps = 70/422 (16%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L + ++ VGG VRDSL+ D DI T+ PD ++F++T + T I Sbjct: 11 TIIQTLQEHGYEAYAVGGCVRDSLLGREPGDWDITTSASPDETKKLFART----VDTGIE 66 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINAL-YA 129 +GT+ ++ K+ F++TT R DG+Y +V+FTR+ + D LRRDFTINA+ Y Sbjct: 67 HGTVTVLLGKEGFEVTTYR----IDGKYEDSRHPTEVIFTRNLREDLLRRDFTINAMAYN 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D +G ++D GG++DL+ + I+ +G+A R ED LRI+R RF A G +++ + A Sbjct: 123 DTEG-IVDIFGGMDDLKRKIIRCVGNARERFGEDALRIMRGVRFAAQLG-FSLEKETKEA 180 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEIS 242 + L+ +S+ERI +E+ KLL + +P I Y+ GI F E+ QE Sbjct: 181 MAELAPTLEKISAERIQTELVKLLVSDSP-ELIREAYHLGITAVILPEFDEMMRTGQETK 239 Query: 243 ---LDQLSQVIEAEQVFEWKIDSLLRFIVL---ISWQDKKSILSMAKKFSLPREIR---- 292 D ++A V D +LR +L ++ + K++ + +IR Sbjct: 240 YHRYDVGEHTVQA--VCNVPPDKVLRLTMLLHDVAKPEMKTVDADGTAHFKGHDIRGEQK 297 Query: 293 ----YFLISFFNCNFNQKT-------LSIPEIKK------------LFYLYGDKVMIAKL 329 + F N ++ T +P KK LF +Y +++ + Sbjct: 298 AKEILRRLKFDNDTIHKVTKLVRWHDYRMPAEKKNVRKAMSKISAELFPMY---LLVKRA 354 Query: 330 KIFLALHY------NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 I Y NL+ C+ ++++D +TG D++ G+ PGK++G Sbjct: 355 DILAHSMYRREEELENLSGLQKCY-EEIVADHECVSLKQLAVTGTDLIGIGMKPGKQIGE 413 Query: 384 IL 385 +L Sbjct: 414 VL 415 >gi|315653514|ref|ZP_07906435.1| poly A polymerase [Lactobacillus iners ATCC 55195] gi|315489205|gb|EFU78846.1| poly A polymerase [Lactobacillus iners ATCC 55195] Length = 458 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 187/381 (49%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 77 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 132 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 133 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 192 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 193 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 251 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 252 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 311 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 312 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 363 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 364 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYESLPLKNESELVIDGNY 416 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +L+ K+ Sbjct: 417 LLKKGIPAGPRIGELLIEIKK 437 >gi|259500651|ref|ZP_05743553.1| poly A polymerase [Lactobacillus iners DSM 13335] gi|259168035|gb|EEW52530.1| poly A polymerase [Lactobacillus iners DSM 13335] Length = 433 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 187/381 (49%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 52 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 107 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 108 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 167 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 168 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 226 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 227 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 286 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 287 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 338 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 339 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 391 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +L+ K+ Sbjct: 392 LLKKGIPAGPRIGELLIEIKK 412 >gi|251782231|ref|YP_002996533.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390860|dbj|BAH81319.1| poly(A) polymerase/tRNA nucleotidyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127083|gb|ADX24380.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 402 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 115/384 (29%), Positives = 190/384 (49%), Gaps = 29/384 (7%) Query: 13 SDLINILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 S+ L +LNK ++ ++ VGG+VRD L+ + D+DIAT+ P+ IF++T Sbjct: 8 SEFQKALPILNKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFNRT--- 64 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 + I +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL Sbjct: 65 -VDVGIEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D+ G+VID GL DL + ++ +G+A R ED LRI+R FRF A ++D D Sbjct: 124 ALDENGQVIDKFTGLQDLEQKRLRAVGEAADRFEEDALRIMRGFRFAA-----SLDFDIE 178 Query: 188 VASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEIS 242 A+ +A K +L S ER + E +KLL A + I+ M + + L QEI+ Sbjct: 179 SATFEAMKSHSLLLAKISVERSFIEFDKLLMAPHWRKGILAMIACQAYDYLPGLGQQEIA 238 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L QL+ + + F + I+ +S Q+ K L K + + L++ ++ Sbjct: 239 LKQLTVSLADDFTFSDHHQAWAYLIISLSIQNPKPFLKAWKTSNDFQRCVAQLVTLYHIR 298 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + P K Y YG K+ ++ +L D +I Q+ + K Sbjct: 299 QER-----PFEKLDIYQYGKKLA----RLIESLRQAMGQDVDMAYIEQLDQALAIHDKHD 349 Query: 363 FPLTGDDVVK-YGIPPGKKVGNIL 385 + G ++K +G+ PG ++G IL Sbjct: 350 IVVNGSHLIKNFGLKPGPELGVIL 373 >gi|203288136|ref|YP_002223151.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia recurrentis A1] gi|201085356|gb|ACH94930.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia recurrentis A1] Length = 432 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + D+I I + N + +VGGA+RD L+ D D T P +M++F K Sbjct: 31 NTKDIIKISQIFNNHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPKEIMKLFPKN---- 86 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALY 128 I T I +GTI II KK F+ITT R D+ + + + ++ FT++ K D RRDFTINA+ Sbjct: 87 IQTGIKHGTISIIFNKKIFEITTYRIDIDYENKRSPKQIKFTKNLKEDLKRRDFTINAIA 146 Query: 129 ADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 ++IDY G DL + IK IG+ + R ED LRILR R FA ID + L Sbjct: 147 MHTLNFEIIDYYNGQQDLNKKIIKCIGNPNKRFEEDALRILRAAR-FASTLNFTIDKNTL 205 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ K + LS ERI +E KLLE +NP I ++ FK F Sbjct: 206 ISMKYKKNNILFLSKERINNEFIKLLEGENPTKGIKYLQKINFFKYFF 253 >gi|203284602|ref|YP_002222342.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia duttonii Ly] gi|201084045|gb|ACH93636.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia duttonii Ly] Length = 432 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + D+I I + N + +VGGA+RD L+ D D T P +M++F K Sbjct: 31 NTKDIIKISQIFNNHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPKEIMKLFPKN---- 86 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALY 128 I T I +GTI II KK F+ITT R D+ + + + ++ FT++ K D RRDFTINA+ Sbjct: 87 IQTGIKHGTISIIFNKKIFEITTYRIDIDYENKRSPKQIKFTKNLKEDLKRRDFTINAIA 146 Query: 129 ADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 ++IDY G DL + IK IG+ + R ED LRILR R FA ID + L Sbjct: 147 MHTLNFEIIDYYNGQQDLNKKIIKCIGNPNKRFEEDALRILRAAR-FASTLNFTIDKNTL 205 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ K + LS ERI +E KLLE +NP I ++ FK F Sbjct: 206 ISMKYKKNNILFLSKERINNEFIKLLEGENPTKGIKYLQKINFFKYFF 253 >gi|331092511|ref|ZP_08341333.1| hypothetical protein HMPREF9477_01976 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400732|gb|EGG80335.1| hypothetical protein HMPREF9477_01976 [Lachnospiraceae bacterium 2_1_46FAA] Length = 444 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 110/398 (27%), Positives = 181/398 (45%), Gaps = 52/398 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++ +D DI T+ LP+ +F +T T I +GTI ++ K+ F++ Sbjct: 26 VGGCVRDSILGREPEDWDITTSALPEETKALFERT----FDTGIEHGTITVLMGKEGFEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FTR + D LRRDFTINA+ +++ ++D GG+ DL+ Sbjct: 82 TTYRIDGKYEDNRHPKQVTFTRCLREDLLRRDFTINAMAYNEEEGIVDIFGGMEDLKEGV 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G+A R ED LRILR RF A G +I+ + + L+ +S+ERI E+ Sbjct: 142 IRCVGNAKERFGEDALRILRAVRFSAQLG-FSIEEETKAGIVALAPTLQQISAERIQVEL 200 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI--------D 261 K+L + NP I Y GI K I + E+ + V E I D Sbjct: 201 VKMLVSPNP-ERIRLAYELGITKVILPEFDEMMNTEQETPHHMYTVGEHTIKALTIIRAD 259 Query: 262 SLLRFIVLI----------------------SWQDKKSILSMAKKFSLPREIRYFLISFF 299 +LR +L+ + +K + ++ K+ + + Sbjct: 260 KILRLTMLLHDVGKPMMKTVDRDGVAHFKYHDVEGEKIVRNILKRLKFDNDTLRKVAKLV 319 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----------CF- 347 + + +++ L G+ + LK+ +A +Q T CF Sbjct: 320 KYHDYRMPARTKNVRRAVNLIGEDLFPFYLKVRMADTLAQSEYQRTEKLANLDGIRDCFE 379 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 +Q + K +TG+D+++ G+ PGK++G +L Sbjct: 380 EIQEKGQCVSLKT--LAVTGNDLIQLGMKPGKEIGEML 415 >gi|327460441|gb|EGF06778.1| polyA polymerase family protein [Streptococcus sanguinis SK1057] Length = 399 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 116/190 (61%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +NR ++ +G A R ED LRI+R FRF A + +++ D VA L+ +S ERI Sbjct: 142 KNRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|302191340|ref|ZP_07267594.1| tRNA CCA-pyrophosphorylase [Lactobacillus iners AB-1] gi|309809261|ref|ZP_07703130.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 2503V10-D] gi|325911998|ref|ZP_08174400.1| tRNA adenylyltransferase [Lactobacillus iners UPII 143-D] gi|308170374|gb|EFO72398.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 2503V10-D] gi|325476183|gb|EGC79347.1| tRNA adenylyltransferase [Lactobacillus iners UPII 143-D] Length = 397 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 187/381 (49%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 16 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 72 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 132 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 191 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 250 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 251 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 303 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +L+ K+ Sbjct: 356 LLKKGIPAGPRIGELLIEIKK 376 >gi|325479731|gb|EGC82821.1| tRNA adenylyltransferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 451 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 119/426 (27%), Positives = 195/426 (45%), Gaps = 59/426 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++ ++DID+ T PD + +FS K+I +GTIK+I + + F+I Sbjct: 27 VGGCVRDSILGRKIKDIDLTTLARPDEIKEVFSNE--KLIDIGRKFGTIKVISKGEEFEI 84 Query: 92 TTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT RSD DGR+ ++ F+ + D RRDFTINA+ A ++GK+ID G DL + Sbjct: 85 TTFRSDGKYLDGRHPDEISFSDNLIDDLKRRDFTINAM-AYEKGKIIDPFSGRCDLEKKV 143 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ +G+ + RI EDYLR LR RF G + ID D A + + ++S ERI EI Sbjct: 144 VRAVGNPYERIEEDYLRSLRAVRFATRLGFE-IDRDLKKAIRENSTNINLISKERIRDEI 202 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWKIDSLLRFIV 268 +K+L P I + + +IF ++ DQ S +D + Sbjct: 203 SKILIEDKPSRGIRLLDELCLLDKIFPELARTKGFDQHSS--------HHNLDVYEHSLK 254 Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLIS-------FFNCNFNQKTLS------------ 309 ++ D + MA + ++ F + F + N ++K L Sbjct: 255 VVDRTDSDLVTRMAALYHDVGKVGTFFLDENGEGRFFGHQNLSEKLLEKRLKDLRFPKKF 314 Query: 310 IPEIKKLFYLYGD---------------KVMIAKLKIFLALHYNNL---THQDTCFI--- 348 I + K L + D ++ A L+ L ++ H+DT I Sbjct: 315 IEDAKSLVKRHMDCSNTYTKKSIRKLLRRIGEANLRRLFNLQRADILATVHRDTSNIDLG 374 Query: 349 ----LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 +VL D K+ + G+D++ G GK +G+IL ++ I+ + ++ED+ Sbjct: 375 ESILEEVLEDNTPKKRSDLAINGNDLIDLGYHEGKIIGDILNKIEEAIIDDKLENNREDI 434 Query: 405 HHLLRK 410 +RK Sbjct: 435 LAFVRK 440 >gi|328946152|gb|EGG40297.1| polyA polymerase family protein [Streptococcus sanguinis SK1087] Length = 399 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 120/201 (59%), Gaps = 10/201 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFERT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 ENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA---KNPLNAIV 223 + E +KLL A +N L A++ Sbjct: 201 FIEFDKLLLAPFWRNGLEALL 221 >gi|289550762|ref|YP_003471666.1| tRNA nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315658258|ref|ZP_07911130.1| polyA polymerase family protein [Staphylococcus lugdunensis M23590] gi|289180294|gb|ADC87539.1| tRNA nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315496587|gb|EFU84910.1| polyA polymerase family protein [Staphylococcus lugdunensis M23590] Length = 400 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 128/240 (53%), Gaps = 12/240 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD +M + DIDI T+ PD + IF T IP ++GTI ++ + Sbjct: 22 EAYFVGGSVRDYIMGRDIHDIDITTSATPDEIETIFQHT----IPIGKAHGTINVVYGQH 77 Query: 88 YFDITTLRSDL-ITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ TD R ++V F R+ D RRDFT+NA+ D+ ++ DY GG D+ Sbjct: 78 NYEVTTFRAEEEYTDHRRPSEVTFVRNLYQDVERRDFTMNAIAMDKSYQIYDYFGGQADI 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + I+ +G+ H R ED LRILR RF A G ID+ +A + LS ERI Sbjct: 138 KQHIIRTVGEPHERFEEDALRILRGLRFEAQLG-FTIDTTTFLAMQQRVADTAYLSIERI 196 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 E+ KL++ ++ HM G+F I F + S+D ++ FE I SLL Sbjct: 197 IVELKKLIQGHYVSSSYKHMIQLGLFNHIPFFE----SIDMNKFIVTEPMSFELWIASLL 252 >gi|319400808|gb|EFV89027.1| poly A polymerase head domain protein [Staphylococcus epidermidis FRI909] Length = 400 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 115/214 (53%), Gaps = 8/214 (3%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 NKG K+ VGG+VRD +M + D+DI T+ +PD + IF KT IP +GTI + Sbjct: 18 NKGF-KAYFVGGSVRDYIMQRPIHDVDITTSAMPDEIESIFDKT----IPVGKEHGTINV 72 Query: 83 ICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + + ++ITT RS+ I R ++V F RD D RRDFT+NA+ D ++ DY Sbjct: 73 VFQNDNYEITTFRSEDEYINHRRPSEVYFVRDLYQDVQRRDFTMNAIAMDLNYQLYDYFN 132 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G D++NR I+ +G R ED LRI+R RF + + IDSD L A ++ L Sbjct: 133 GQQDIKNRVIRTVGVPSERFAEDALRIIRGLRFQSQLNFQ-IDSDTLHAMSSHISDIQYL 191 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 S ER+ E+ KL+ N + M N F I Sbjct: 192 SVERVVVELKKLIMGNNVKQSFEVMQNMKAFNYI 225 >gi|229552186|ref|ZP_04440911.1| tRNA adenylyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258539600|ref|YP_003174099.1| tRNA nucleotidyltransferase CCA-adding enzyme [Lactobacillus rhamnosus Lc 705] gi|229314488|gb|EEN80461.1| tRNA adenylyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151276|emb|CAR90248.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus rhamnosus Lc 705] Length = 398 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 111/200 (55%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL + K+ VGG+VRD+L+ L + D+DIA++ P+ + RIF +T + T I Sbjct: 14 IPILKKIEAAGYKAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRT----VDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++TT R++ R V F R D RRDFTINAL G Sbjct: 70 EHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID GL DL+NR ++ +GD H R ED LR++R RF + G +I++ A Sbjct: 130 TIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLG-FHIEATTKAAIAAN 188 Query: 194 KKGLKILSSERIWSEINKLL 213 LK +S ERI +E N+LL Sbjct: 189 APLLKHISVERIAAEFNRLL 208 >gi|332360707|gb|EGJ38516.1| polyA polymerase family protein [Streptococcus sanguinis SK49] Length = 399 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GLNDL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFHGLNDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 ENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|312875453|ref|ZP_07735456.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2053A-b] gi|311088964|gb|EFQ47405.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2053A-b] Length = 397 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 114/381 (29%), Positives = 186/381 (48%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 16 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D GK+ Sbjct: 72 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDADGKI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 132 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 191 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 250 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 251 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 303 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +LV K+ Sbjct: 356 LLKKGIPAGPRIGELLVEIKK 376 >gi|256544465|ref|ZP_05471838.1| poly A polymerase [Anaerococcus vaginalis ATCC 51170] gi|256399790|gb|EEU13394.1| poly A polymerase [Anaerococcus vaginalis ATCC 51170] Length = 226 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 130/214 (60%), Gaps = 6/214 (2%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGA+RD L+ + DID+ T P+++M+IFS K+I +GTIK+I + + Sbjct: 16 ETYLVGGALRDKLLGEKIHDIDLTTRARPEQIMKIFSDM--KLIDIGKKFGTIKVIYKSE 73 Query: 88 YFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 F+IT+ R++ D R+ K+ F+ + D RRDFTINA+ A++ GK+ID G DL Sbjct: 74 EFEITSFRAESFYKDKRHPDKISFSNTIEEDLKRRDFTINAM-AERNGKIIDLFDGKKDL 132 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +N+ I+ +G+ + RI EDYLR LR R FA + I+ + A K ++ +S ERI Sbjct: 133 KNKIIRAVGNPYERIEEDYLRALRAVR-FATVLDFEIEKNLKNAIKNKKNNIEEISKERI 191 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 EI+K+L +KNP I + N + + IF +V+ Sbjct: 192 RDEIDKILLSKNPSRGIRLLENLDLLEYIFPEVK 225 >gi|309806747|ref|ZP_07700741.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus iners LactinV 03V1-b] gi|308166862|gb|EFO69047.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus iners LactinV 03V1-b] Length = 397 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 186/381 (48%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 16 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 72 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A + Sbjct: 132 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FGLDLDTKKAIFDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 191 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 250 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 251 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G+ Sbjct: 303 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGNY 355 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +L+ K+ Sbjct: 356 LLKKGIPAGPRIGELLIEIKK 376 >gi|283798454|ref|ZP_06347607.1| poly A polymerase [Clostridium sp. M62/1] gi|291073859|gb|EFE11223.1| poly A polymerase [Clostridium sp. M62/1] Length = 430 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 181/369 (49%), Gaps = 28/369 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD+++N D DI T+ P V +F KT + T + +GT+ +I ++I Sbjct: 34 VGGCVRDTILNRIPGDWDITTSAKPVEVKAVFGKT----VDTGLQHGTVTVIRDHVGYEI 89 Query: 92 TTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D DGR+ + V FT D + D RRDFTINA+ + ++D GG+ DL+NRT Sbjct: 90 TTYRIDGEYEDGRHPREVEFTSDLREDLRRRDFTINAMAYSPETGLVDIFGGMEDLKNRT 149 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G+A R ED LRI+R RF + + +I+ + A L +S ERI E+ Sbjct: 150 IRCVGNAVERFGEDALRIMRAVRFASQL-DFSIEEETYRALSGIAPNLAHVSKERIQVEL 208 Query: 210 NKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 K L + P +V M + G+ F IF +E ++ ++ + + + K Sbjct: 209 TKTLLSGRPQGVLV-MEDTGMCPYMTAGFPGIFSKARESGINLEERLKRSALLPQEKS-- 265 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI--PEIKKLFYLY 320 LR+ V + +K ++ ++ L + + + F ++TL P ++++ Sbjct: 266 -LRYAVFLGHLGEKGACTILRELKLDNDTIRRVKTLV--RFMEETLPEDGPALRRMMSQM 322 Query: 321 G----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376 D +++ + +F + L + C ++ D I K +TG+D++ G+ Sbjct: 323 EDSLFDSLLLMRKTVFPEQMEDVLKTESRCRRVRERGDCIRLKD--LAVTGNDLIAAGMK 380 Query: 377 PGKKVGNIL 385 PGK++G L Sbjct: 381 PGKEMGERL 389 >gi|324995700|gb|EGC27612.1| polyA polymerase family protein [Streptococcus sanguinis SK678] Length = 399 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 115/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDIYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R FRF A + +++ D VA L+ +S ERI Sbjct: 142 ENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|295090763|emb|CBK76870.1| tRNA nucleotidyltransferase/poly(A) polymerase [Clostridium cf. saccharolyticum K10] Length = 430 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 181/369 (49%), Gaps = 28/369 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD+++N D DI T+ P V +F KT + T + +GT+ +I ++I Sbjct: 34 VGGCVRDTILNRIPGDWDITTSAKPVEVKAVFGKT----VDTGLQHGTVTVIRDHVGYEI 89 Query: 92 TTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D DGR+ + V FT D + D RRDFTINA+ + ++D GG+ DL+NRT Sbjct: 90 TTYRIDGEYEDGRHPREVEFTSDLREDLRRRDFTINAMAYSPETGLVDIFGGMEDLKNRT 149 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G+A R ED LRI+R RF + + +I+ + A L +S ERI E+ Sbjct: 150 IRCVGNAVERFGEDALRIMRAVRFASQL-DFSIEEETYRALSGIAPNLAHVSKERIQVEL 208 Query: 210 NKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 K L + P +V M + G+ F IF +E ++ ++ + + + K Sbjct: 209 TKTLLSGRPQGVLV-MEDTGMCPYMTAGFPGIFSKARESGINLEERLKRSALLPQEKS-- 265 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI--PEIKKLFYLY 320 LR+ V + +K ++ ++ L + + + F ++TL P ++++ Sbjct: 266 -LRYAVFLGHLGEKGACTILRELKLDNDTIRRVKTLV--RFMEETLPEDGPALRRMMSQM 322 Query: 321 G----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376 D +++ + +F + L + C ++ D I K +TG+D++ G+ Sbjct: 323 EDSLFDSLLLMRKTVFPEQMEDVLKTESRCRRVRERGDCIRLKD--LAVTGNDLIAAGMK 380 Query: 377 PGKKVGNIL 385 PGK++G L Sbjct: 381 PGKEMGERL 389 >gi|317497212|ref|ZP_07955536.1| poly A polymerase head domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895457|gb|EFV17615.1| poly A polymerase head domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 448 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 18/215 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRDS++ + D DI T+ P V IF T + T I +GT+ ++ + Sbjct: 22 EAYIVGGCVRDSILGRTPGDWDITTSASPQEVKEIFDHT----VDTGIEHGTVTVLMNHE 77 Query: 88 YFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVG 140 +++TT R DG+Y +V FT+ + D LRRDFTINA+ Y D +G +ID Sbjct: 78 PYEVTTYR----VDGKYEDHRRPNEVHFTKSLREDLLRRDFTINAMAYNDSEG-IIDMYD 132 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G+ DL+N+TI+ +G+A R ED LRILR RF A G + I+ A K LK + Sbjct: 133 GMTDLKNQTIRCVGEAKKRFDEDALRILRALRFQAQLGFQ-IEEKTEEAIKNQAKFLKDI 191 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S+ERI E+ KL+ + +P +V+ Y G+ K IF Sbjct: 192 SAERIQVELEKLITSAHP-EVLVNAYKLGVTKIIF 225 >gi|167537598|ref|XP_001750467.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771007|gb|EDQ84681.1| predicted protein [Monosiga brevicollis MX1] Length = 241 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/185 (39%), Positives = 102/185 (55%), Gaps = 25/185 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 + GGAVRD L LS +D+D+ATT P+ I +V+ T + +GT+ + + F+ Sbjct: 32 LAGGAVRDLLRGLSPKDLDLATTATPEESKAILLAAHVRVVETGLQHGTVTAVIDGEPFE 91 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ITTLR D TDGR A VV+T DW D+ RRD TINA++ D L+D Sbjct: 92 ITTLRIDEQTDGRRAMVVYTDDWHLDAQRRDLTINAMFMD-----------LHD------ 134 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-KGLKILSSERIWSEI 209 RI EDYLRI+R+FRF N +++I+A GL+ +S ER+W E+ Sbjct: 135 -------ERIKEDYLRIMRYFRFHGRIALNNEHEAAQLSAIRANAAGLEQISGERVWMEL 187 Query: 210 NKLLE 214 K+LE Sbjct: 188 AKILE 192 >gi|223982596|ref|ZP_03632831.1| hypothetical protein HOLDEFILI_00105 [Holdemania filiformis DSM 12042] gi|223965433|gb|EEF69710.1| hypothetical protein HOLDEFILI_00105 [Holdemania filiformis DSM 12042] Length = 416 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/200 (38%), Positives = 113/200 (56%), Gaps = 3/200 (1%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + L LN+ ++ VGG VRD+L+ VQD+D+ T+ LP++ + F Y VIPT + Sbjct: 10 LTCLKCLNEAGYEAWWVGGCVRDTLLGRPVQDVDVTTSALPEQTIVCFRNAGYPVIPTGL 69 Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++TT RSD D R+ + V FTR D RRDFTINAL Sbjct: 70 KHGTVTVMIQDIPIEVTTYRSDSDYQDHRHPESVRFTRSLWEDCARRDFTINALCWHPDL 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + DY G DL+N+ I IG+ + R ED LRILR RF + G +D A Sbjct: 130 GLRDYFHGQRDLKNKVIACIGNPYQRFDEDALRILRALRFASTLGFA-LDLGTRQALFHQ 188 Query: 194 KKGLKILSSERIWSEINKLL 213 ++ L++LS+ERI E+ K++ Sbjct: 189 EELLRVLSAERIAREMEKMV 208 >gi|317495207|ref|ZP_07953577.1| poly A polymerase head domain-containing protein [Gemella moribillum M424] gi|316914629|gb|EFV36105.1| poly A polymerase head domain-containing protein [Gemella moribillum M424] Length = 382 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 10/236 (4%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +I + K+ I+IL ++ K ++ VGG VRD L+++ DID+ T LP++V Sbjct: 1 MQNIFEQKF---GKAIDILKIIEKNGYEAYFVGGCVRDYLLDVDFSDIDVTTNALPEQVK 57 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSL 118 IF KT I T + +GT+ +I + + ++ITT R++ A KV F R+ K D Sbjct: 58 EIFGKT----IDTGLQHGTVTVIFKGEAYEITTFRTESDYSNHRAPDKVEFVRNLKEDLD 113 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFTINA+ D +G + D+ G+ DL+N I+ + + R ED LR+LR FRF + Sbjct: 114 RRDFTINAMAMDSRGVIYDFHNGVTDLKNGVIRTVNNPSERFYEDSLRMLRAFRFSSKLN 173 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + I+ A K K ++ +S ERI SE KLL N++ + + I K I Sbjct: 174 FE-IEESTFFAIKKNAKLIEFVSVERIVSEFKKLLVGVGCKNSLEKLISSEIHKYI 228 >gi|330719089|ref|ZP_08313689.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc fallax KCTC 3537] Length = 342 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL LN+ ++ VGG+VRD+L+ + D+DIAT+ P+ V RIF+ T + T I + Sbjct: 6 ILKKLNEAHFEAYFVGGSVRDTLLGQPIHDVDIATSAFPEEVKRIFTHT----VDTGIQH 61 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ + ++ITT R++ TD R V F R D RRDFTINAL ++G+V Sbjct: 62 GTVMILDHGEGYEITTFRTESGYTDFRRPDHVRFVRSLSEDLKRRDFTINALAMTREGEV 121 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GLNDL I+ +GD R ED LR++R RF A G I+ A Sbjct: 122 IDLFDGLNDLNAGIIRAVGDPTERFGEDALRMMRALRFSAQLG-FTIEEQTCHALATLVP 180 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ ++ ERI E KL+ KN +AI Sbjct: 181 NLEKIAVERIQVEFEKLMMGKNAAHAI 207 >gi|242242738|ref|ZP_04797183.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis W23144] gi|242233874|gb|EES36186.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis W23144] Length = 400 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 112/209 (53%), Gaps = 7/209 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ VGG+VRD +M + D+DI T+ +PD + IF KT IP +GTI ++ + Sbjct: 22 KAYFVGGSVRDYIMQRPIHDVDITTSAMPDEIESIFDKT----IPVGKEHGTINVVFQND 77 Query: 88 YFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ITT RS+ I R ++V F RD D RRDFT+NA+ D ++ DY G D+ Sbjct: 78 NYEITTFRSEDEYINHRRPSEVYFVRDLYQDVQRRDFTMNAIAMDLNYQLYDYFNGQQDI 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +NR I+ +G R ED LRI+R RF + + IDSD L A ++ LS ER+ Sbjct: 138 KNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLQAMSSHISDIQYLSVERV 196 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 E+ KL+ N + M N F I Sbjct: 197 VVELKKLIMGNNVKQSFEVMQNMKAFNYI 225 >gi|260495614|ref|ZP_05815738.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_33] gi|260196797|gb|EEW94320.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_33] Length = 442 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 124/221 (56%), Gaps = 14/221 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D AT + + + +FS+ Y T Sbjct: 14 IKILNKLNKC-GKGYIVGGAIRDILLELKPKDVDFATNLSYETLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 S+G ++I ++I R D+ G+ KV F D K D RRDFTINA+ +Q+ + Sbjct: 71 SFGVLRIRINNIDYEIAKFREDIY--GKEKKVSFVDDIKNDLARRDFTINAMAYNQKEGI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIK 192 ID G D+ NR I FIG+A RI+ED LR+LR FRF + +D S+ + +IK Sbjct: 129 IDLYNGQKDIENRIINFIGNAEERIIEDPLRVLRAFRFMSR-----LDFSLSENTIEAIK 183 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +K LK + ERI E +KLL +N N + M + G+ + Sbjct: 184 KQKDLLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLE 224 >gi|87311632|ref|ZP_01093749.1| poly A polymerase [Blastopirellula marina DSM 3645] gi|87285635|gb|EAQ77552.1| poly A polymerase [Blastopirellula marina DSM 3645] Length = 426 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 184/382 (48%), Gaps = 41/382 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 GG VRD L+ QD D+AT P+RV +IF + R I S T++ ++ ++ Sbjct: 30 AGGCVRDMLLGRDPQDFDVATDAPPERVRQIFGEKRTLAIGASFGVITVQGGKKRGQIEV 89 Query: 92 TTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRT 149 T R D+ +DGR V + D+ RRDFTIN ++ D I D+VGG DLR+R Sbjct: 90 ATFRQDVGYSDGRRPDEVRFTSAEEDAKRRDFTINGIFYDPDASAIYDFVGGQIDLRDRL 149 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ IGD + R ED LR+LR RF + + + +++ + + A + + + ++S+ER+ E+ Sbjct: 150 VRAIGDPNQRFAEDKLRMLRAIRFSSTF-QFDLEMNTMRAIQRHSRNIAVVSAERVAVEM 208 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV--------FEWKID 261 K+L + + A+V + + +F + +V + +D + E + F + Sbjct: 209 RKMLCSPRRVEAVVLLRDSWLFPTVLPEVITV-IDHAPRWTETLRTLQFLSGNDFATALA 267 Query: 262 SLLRFIV---LISWQDKKSI---LSMAKKFSL----PREIRYFLISFFNCNFN------- 304 +LLRF L S +K I + + +++ L R++++ L Sbjct: 268 ALLRFSTARELASGDPRKPIPLLVEVCRRWKLTNDETRDVQWLLRQVHVLQTAKDQSWPR 327 Query: 305 -QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 Q+ L P I+KL L IAK ++ +L H D F+ + L + P Sbjct: 328 LQRVLVDPRIEKLADLAS---AIAKARM------ESLEHLD--FVRERLGWAVERLNPSP 376 Query: 364 PLTGDDVVKYGIPPGKKVGNIL 385 TGDD+++ G+ PG+ +L Sbjct: 377 VATGDDLIRAGLKPGRHFQGLL 398 >gi|309804150|ref|ZP_07698228.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 11V1-d] gi|325912841|ref|ZP_08175219.1| tRNA adenylyltransferase [Lactobacillus iners UPII 60-B] gi|308163733|gb|EFO66002.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 11V1-d] gi|325477834|gb|EGC80968.1| tRNA adenylyltransferase [Lactobacillus iners UPII 60-B] Length = 397 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 186/381 (48%), Gaps = 28/381 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I T I + Sbjct: 16 ILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R KV F ++ D RRDFTINAL D +GK+ Sbjct: 72 GTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMDAEGKI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GLNDL IK +G A +R ED LR++R RF + G + +D D A + Sbjct: 132 IDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLGFE-LDLDTKKAIFDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV---IE 251 L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 191 LLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKLNFSPV 250 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E+ F I LL+ + + + K + Y +++FF+ + IP Sbjct: 251 TEETFWATIIILLK----LPNNEIAKFMRAWKNSNAMEHCVYDIVTFFDL----LSYRIP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGDD 369 +LF D +M L +N+ Q ++ I+ + + + G Sbjct: 303 SNYELFSTNLDTIM-------QTLDLSNILGQPVNSQAIIDRYEALPLKNESELVIDGHY 355 Query: 370 VVKYGIPPGKKVGNILVHCKQ 390 ++K GIP G ++G +L+ K+ Sbjct: 356 LLKKGIPAGPRIGELLIEIKK 376 >gi|313891805|ref|ZP_07825410.1| putative tRNA adenylyltransferase [Dialister microaerophilus UPII 345-E] gi|313119799|gb|EFR42986.1| putative tRNA adenylyltransferase [Dialister microaerophilus UPII 345-E] Length = 490 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 +DS+ + +L ++ K ++ +GG VRD L+N D DI T+ +PD+++ I K Sbjct: 17 YDSNAVFLLEIIEKSGYEAYFIGGCVRDLLLNKKPSDWDITTSAMPDKIVEILHNFNVKT 76 Query: 71 IPTS-ISYGTIKIICRKKYFDITTLRSDLITDGRY--AKVVFTRDWKADSLRRDFTINAL 127 + + YGT+ I +K ++ITT R D+ + KV+FT + K D RRDFTINA+ Sbjct: 77 FDNAGMKYGTVSAIINEKIYEITTFRRDIYGQNSHLPDKVLFTENLKEDLSRRDFTINAM 136 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +D+ G + DY GG +DLR + +K +GD+ ED LR+ R RF G+ N + D Sbjct: 137 ASDRNGNIYDYFGGQSDLRRKILKTVGDSEKSFCEDALRLFRACRFL---GQLNFEPDND 193 Query: 188 VASIKAKKGLKI--LSSERIWSEINKLL 213 + S ++ LS ER+ EINKLL Sbjct: 194 LISAMPYAFYRVSGLSLERVKREINKLL 221 >gi|257437855|ref|ZP_05613610.1| metal dependent phosphohydrolase [Faecalibacterium prausnitzii A2-165] gi|257199515|gb|EEU97799.1| metal dependent phosphohydrolase [Faecalibacterium prausnitzii A2-165] Length = 464 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 129/243 (53%), Gaps = 7/243 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L L+ + VGG VRDSL+ L D D+ T+ P++VM +F + K I Sbjct: 7 DPGAALLLDALHGAGHAAYAVGGCVRDSLLGLDPHDWDLCTSARPEQVMALFGE--EKCI 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINAL-Y 128 PT + +GT+ + + ++ TT R++ +DGR+ V F + + D RRDFTINA+ Y Sbjct: 65 PTGLQHGTVTVKQGGRLYETTTFRTEGAYSDGRHPDAVCFVPEVREDLARRDFTINAMAY 124 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + ++G +ID GG +DL ++ +G+ R ED LRILR +RF A +G ID V Sbjct: 125 SAEEG-LIDPFGGRDDLAAHRVRAVGEPERRFEEDALRILRLYRFAARFG-FAIDPATGV 182 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A+ L +S+ERI E+ KLL A P + + I E+ + Q +L + Sbjct: 183 AARALGPHLDCVSAERIQEELLKLLAAPRPGSYLEPAVLAVILPELEPEKQPERFAELCR 242 Query: 249 VIE 251 I+ Sbjct: 243 TID 245 >gi|52080753|ref|YP_079544.1| tRNA CCA-pyrophosphorylase [Bacillus licheniformis ATCC 14580] gi|52786124|ref|YP_091953.1| tRNA CCA-pyrophosphorylase [Bacillus licheniformis ATCC 14580] gi|319645289|ref|ZP_07999522.1| CCA-adding enzyme [Bacillus sp. BT1B_CT2] gi|73619750|sp|Q65I54|CCA_BACLD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|52003964|gb|AAU23906.1| tRNA nucleotidyltransferase [Bacillus licheniformis ATCC 14580] gi|52348626|gb|AAU41260.1| Cca [Bacillus licheniformis ATCC 14580] gi|317393098|gb|EFV73892.1| CCA-adding enzyme [Bacillus sp. BT1B_CT2] Length = 397 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L K ++ VGGAVRD+ MN V DIDIAT P+ + IF KT + Sbjct: 9 LPLLRELKKHGWQAYFVGGAVRDAQMNRDVGDIDIATDASPEEIEAIFPKT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ + +++TT R++L + R + V F + K D RRD TINA+ D++G Sbjct: 65 EHGTIIVLFEGESYEVTTFRAELEYEDYRRPSGVQFIKSLKEDLKRRDLTINAMAMDEEG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++IDY GGL D+R R I+ +GD R ED LR+LR RF + E + + A + Sbjct: 125 RLIDYFGGLRDIRERLIQTVGDPAERFHEDALRMLRALRFMSQL-EFELSPNTKKAICEN 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + L +S+ER E KLL+ K A+ G++KE+ Sbjct: 184 RPLLAHISTERKTVEFEKLLKGKAAGRALEAAAETGLYKEL 224 >gi|222529695|ref|YP_002573577.1| tRNA adenylyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456542|gb|ACM60804.1| tRNA adenylyltransferase [Caldicellulosiruptor bescii DSM 6725] Length = 394 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 145/282 (51%), Gaps = 13/282 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F KT IP Sbjct: 6 NEPMKVIRTLNQHGFKAYLVGGCLRDYLLSKEPKDFDIATDAKPEDVIHLFEKT----IP 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 62 TGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +IDY GG+ DLRN+ ++ +G+ H R ED LRILR RF I++ A Sbjct: 122 DEGLIDYFGGIEDLRNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IENKTFEALK 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEISLD 244 K LK +S ERI E++K LE+KN + +Y + + +I+L + ++ D Sbjct: 181 SLKHLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYLYLSQVDFD 240 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 + + F D +L ++ + +K ++ A K S Sbjct: 241 FIPTKFKVPAFFACLKDGILVEKLMRDLKFEKKKINAAVKLS 282 >gi|258508389|ref|YP_003171140.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus rhamnosus GG] gi|257148316|emb|CAR87289.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus rhamnosus GG] gi|259649703|dbj|BAI41865.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus rhamnosus GG] Length = 398 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL + ++ VGG+VRD+L+ L + D+DIA++ P+ + RIF +T + T I Sbjct: 14 IPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRT----VDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++TT R++ R V F R D RRDFTINAL G Sbjct: 70 EHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID GL DL+NR ++ +GD H R ED LR++R RF + G +I++ A Sbjct: 130 TIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLG-FHIEATTKAAIAAN 188 Query: 194 KKGLKILSSERIWSEINKLL 213 LK +S ERI +E N+LL Sbjct: 189 APLLKHISVERIAAEFNRLL 208 >gi|332366640|gb|EGJ44383.1| polyA polymerase family protein [Streptococcus sanguinis SK1059] Length = 399 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFERT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 ENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|199598698|ref|ZP_03212112.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus rhamnosus HN001] gi|199590386|gb|EDY98478.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus rhamnosus HN001] Length = 398 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL + ++ VGG+VRD+L+ L + D+DIA++ P+ + RIF +T + T I Sbjct: 14 IPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRT----VDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++TT R++ R V F R D RRDFTINAL G Sbjct: 70 EHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID GL DL+NR ++ +GD H R ED LR++R RF + G +I++ A Sbjct: 130 TIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLG-FHIEATTKAAIAAN 188 Query: 194 KKGLKILSSERIWSEINKLL 213 LK +S ERI +E N+LL Sbjct: 189 APLLKHISVERIAAEFNRLL 208 >gi|332360748|gb|EGJ38556.1| polyA polymerase family protein [Streptococcus sanguinis SK355] Length = 399 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 115/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +NR ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 KNRILQAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCASLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|317133125|ref|YP_004092439.1| Polynucleotide adenylyltransferase region [Ethanoligenens harbinense YUAN-3] gi|315471104|gb|ADU27708.1| Polynucleotide adenylyltransferase region [Ethanoligenens harbinense YUAN-3] Length = 396 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 126/244 (51%), Gaps = 8/244 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L++ + ++ +VGG VRD L+ + DIDIAT PD+V +F+KT PT + Sbjct: 11 EMLAVFGRAGIEAWLVGGCVRDGLLGRTPNDIDIATAATPDQVQALFAKT----APTGVQ 66 Query: 77 YGTIKIICRKKYFDITTLRSDLIT-DGRY-AKVVFTRDWKADSLRRDFTINALYADQQGK 134 YGT+ + C ++TT RS+ T D R+ A+VVF + D RRDFTINA+ + Sbjct: 67 YGTVTVFCGGAQAEVTTFRSESGTRDTRHPARVVFGASLRDDLARRDFTINAMAWYPERG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D GG DL+ ++ +G+ R ED LR+LR +RF A G ++ A+++A Sbjct: 127 LYDPFGGEADLKAGLVRAVGEPCLRFAEDALRVLRAYRFAAQLG-FTVEPRTRAAAVEAM 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 LS ER+ E KLL + P+ A + G++ + L V+ + + A Sbjct: 186 PLAAALSGERVREEWEKLLCSPCPVLAFLPEL-AGVWCAVGLPVKPMRPPAGLADVPARA 244 Query: 255 VFEW 258 W Sbjct: 245 AQRW 248 >gi|262282317|ref|ZP_06060085.1| tRNA CCA-pyrophosphorylase [Streptococcus sp. 2_1_36FAA] gi|262261608|gb|EEY80306.1| tRNA CCA-pyrophosphorylase [Streptococcus sp. 2_1_36FAA] Length = 399 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLKRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R D RRDFTINAL D+ G+VID GLNDL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLVEDLKRRDFTINALALDENGQVIDLFQGLNDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R FRF A + +++ D +A L+ +S ERI Sbjct: 142 ENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFLAMKNCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|299538590|ref|ZP_07051873.1| CCA-adding enzyme [Lysinibacillus fusiformis ZC1] gi|298726177|gb|EFI66769.1| CCA-adding enzyme [Lysinibacillus fusiformis ZC1] Length = 390 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L + ++ IVGGAVRD+L++ D+D+AT LP+ V +F KT + I + Sbjct: 13 VIEQLEQAGFEAVIVGGAVRDALLDRPAHDVDVATNALPEEVKTVFQKT----VDIGIQH 68 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ +I ++TT R+D TD R + V F R K D RRDFT+NA+ + G Sbjct: 69 GTVLVIVPAGPVEVTTYRTDGEYTDHRRPQNVHFVRSLKEDLQRRDFTMNAIAMRRDGSF 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GG D+ R I+ +G+A R ED LR+LR RF A + I+++ L A + Sbjct: 129 VDYYGGQQDIEKRVIRAVGEAEKRFAEDALRMLRAIRFSAQL-DFTIEANTLAAIQQRAG 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L ++ ERI +E++KL + I + + G+ + D Q Sbjct: 188 DLSFIAKERIKAELDKLWVGQTVFGGIQKLEDSGLTAYLTGDFQ 231 >gi|313887921|ref|ZP_07821600.1| putative tRNA adenylyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846087|gb|EFR33469.1| putative tRNA adenylyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 440 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 132/232 (56%), Gaps = 16/232 (6%) Query: 17 NILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 N+L +LNK + ++ IVGG+VRD LM + D DI T+ P+ + ++F YK + Sbjct: 4 NVLFILNKLRENGFEAYIVGGSVRDKLMGIEPHDYDITTSARPEEIKKVFQA--YKTVLI 61 Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GT+ I+ +++TT R D I + + KV+F+++ D RRDFTINA+ D Sbjct: 62 GEDFGTVGILLDNTLYEVTTFRIDGAYINNRKPEKVIFSKNLTEDLKRRDFTINAMAMDG 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGL 187 G + D G +D++N+ I+ +GD + RI ED LR++R RF + E+ D+ L Sbjct: 122 DGNLYDPFNGQDDIKNKIIRAVGDPNERIREDALRMMRAIRFAGRFRFFIEEELFDAISL 181 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 AS+ LK ++ ERI+ E +K++ ++P + ++ M G+ IF +++ Sbjct: 182 NASL-----LKKIAPERIFDEFSKMITGESPSHYLLLMEETGMLDVIFPELK 228 >gi|332361335|gb|EGJ39139.1| polyA polymerase family protein [Streptococcus sanguinis SK1056] Length = 399 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFERT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 ENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|312877400|ref|ZP_07737365.1| tRNA adenylyltransferase [Caldicellulosiruptor lactoaceticus 6A] gi|311795874|gb|EFR12238.1| tRNA adenylyltransferase [Caldicellulosiruptor lactoaceticus 6A] Length = 394 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 129/238 (54%), Gaps = 7/238 (2%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F KT IP Sbjct: 6 NEPMKVIKTLNQHGFKAYLVGGCLRDYLLSKEPEDFDIATDAKPEDVIHLFEKT----IP 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 62 TGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++ A Sbjct: 122 DEGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IENKTFEALK 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK +S ERI E++K LE+KN + +Y + I + +I L LSQV Sbjct: 181 SLKDLLKKISQERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYL-YLSQV 237 >gi|254520365|ref|ZP_05132421.1| polyA polymerase [Clostridium sp. 7_2_43FAA] gi|226914114|gb|EEH99315.1| polyA polymerase [Clostridium sp. 7_2_43FAA] Length = 448 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 7/213 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRDS++N S +D DI T+ P+ + +F KT IPT I +GT+ ++ ++ Sbjct: 25 MVGGCVRDSILNNSPKDYDITTSAKPEDTLSLFEKT----IPTGIKHGTVTVLINNNSYE 80 Query: 91 ITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 +TT R++ + + R + V F D + D RRDFTINAL ++ ++DY G++D++N Sbjct: 81 VTTYRTEGNYLDNRRPSSVNFVSDIRDDLSRRDFTINALAYNKSAGLVDYFNGISDIKNS 140 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +GDA R ED LR+LR RF +I+ + A + K + +S ERI E Sbjct: 141 IIRCVGDADKRFKEDALRMLRAVRFSCQLN-FDIEEETYNAILNNNKLISNISFERIRDE 199 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + K+L + NP ++ + + G+ I ++ + Sbjct: 200 LCKILISDNPSKGLILLKDTGLLGAILPEINNL 232 >gi|225571166|ref|ZP_03780164.1| hypothetical protein CLOHYLEM_07254 [Clostridium hylemonae DSM 15053] gi|225159997|gb|EEG72616.1| hypothetical protein CLOHYLEM_07254 [Clostridium hylemonae DSM 15053] Length = 457 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 133/240 (55%), Gaps = 16/240 (6%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I++ L ++ VGG VRDS++ + +D DI T+ +P++ +F +T T I Sbjct: 27 DIITTLQAHGFEAYAVGGCVRDSVLGRTPEDWDITTSAMPEQTKSLFPRT----FDTGIE 82 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + F++TT R D D R+ K V FTR K D LRRDFTINA+ +++ Sbjct: 83 HGTVTVLLEHEGFEVTTYRIDGKYEDNRHPKEVTFTRSLKEDLLRRDFTINAMAYNEKDG 142 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D GG+ DL + I+ +GDA R ED LRILR RF A G +I+ + K Sbjct: 143 LTDIFGGMKDLESGLIRCVGDAKERFSEDALRILRGVRFAAQLG-FDIEDETKEGMRKLA 201 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 LK +S+ERI +E+ K++ +K P ++ Y GI + + L + +++E EQ Sbjct: 202 YTLKNISAERIQTELVKMVTSKRP-QLLMTAYELGITR--------VFLPEFDRMMETEQ 252 >gi|331083670|ref|ZP_08332781.1| hypothetical protein HMPREF0992_01705 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403881|gb|EGG83433.1| hypothetical protein HMPREF0992_01705 [Lachnospiraceae bacterium 6_1_63FAA] Length = 415 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 179/389 (46%), Gaps = 54/389 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDSL+ S D DI T+ P V IF +T + T + +GT+ ++ K+ F++ Sbjct: 26 VGGCVRDSLLFRSPADWDITTSAKPLEVKEIFKRT----VDTGLQHGTVTVLIEKEGFEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V+FT + + D RRDFTINA+ + ++D GG DL+++ Sbjct: 82 TTYRIDGEYEDSRHPKEVIFTGNLEEDLKRRDFTINAMAYNDAVGLVDVFGGRQDLQDKI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSERI 205 ++ +G+ R ED LRILR RF A G EK ++ ++A LK +S+ERI Sbjct: 142 VRCVGNPQERFTEDALRILRAVRFSAQLGFSIEEKTKEAAKVLAPT-----LKNISAERI 196 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW----KID 261 +E+ KLL +KNP + + + GI K + + D L + E+ + D Sbjct: 197 QTELLKLLVSKNP-HYLKTAWELGITKIVLPE-----FDVLMETSMGEKTLKAFAYTSAD 250 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRY---------FLISFFNCNFNQKTLSIPE 312 R VL + +K S ++ R +R+ L+ + C + Sbjct: 251 KAERLAVLFANMEKTPEKSRDLAKNILRRLRFDNDTINKVSELVFWHTCPWEC------- 303 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC-------------FILQVLSDIIHWK 359 KK + + A + L +H L ++ F +++ Sbjct: 304 TKKAVRIVLSQCTPALFPVLLNVHRAELLAEEKPDKENLEFLEKSGEFYREIMEKKECIS 363 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + ++G D ++ GI PGKK+G +L C Sbjct: 364 IKMLAVSGKDFIEMGIEPGKKIGELLSSC 392 >gi|283768261|ref|ZP_06341174.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bulleidia extructa W1219] gi|283105138|gb|EFC06509.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bulleidia extructa W1219] Length = 404 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 125/242 (51%), Gaps = 17/242 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I L N G + + +VGGA+R+ L+ ++D D+ T P+ +MR F Y IPT I + Sbjct: 13 IHELQNHGYE-AYLVGGAIRNHLLGYPIKDYDLTTNATPEEMMRFFQN--YPTIPTGIQH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +ITT R D D R+ +V F+ K D RRDFTINAL QQ + Sbjct: 70 GTLTVLSQGHPIEITTYRVDGEYQDHRHPNQVQFSSSLKEDCARRDFTINALCYHQQEGL 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D+ G DL R I+ IG A R ED LRILR RF A + I+ + A K K Sbjct: 130 VDFFQGQRDLEKRLIRCIGKAEDRFEEDALRILRALRFAARLNFE-IEKETAQAMFKKKD 188 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L +S ERI SEI +L G F E + D+ ++ LSQ I+ E V Sbjct: 189 LLAFISKERIHSEIIQLFSYP----------KSGQFLEPYFDIFISAIPSLSQ-IQKEVV 237 Query: 256 FE 257 F+ Sbjct: 238 FK 239 >gi|322411575|gb|EFY02483.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 402 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 114/384 (29%), Positives = 189/384 (49%), Gaps = 29/384 (7%) Query: 13 SDLINILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 S+ L +LNK ++ ++ VGG+VRD L+ + D+DIAT+ P+ IF++T Sbjct: 8 SEFQKALPILNKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFNRT--- 64 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 + I +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL Sbjct: 65 -VDVGIEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D+ G+VID GL DL + ++ +G+A R ED LRI+R FRF A ++D D Sbjct: 124 ALDENGQVIDKFTGLQDLEQKRLRAVGEAADRFEEDALRIMRGFRFAA-----SLDFDIE 178 Query: 188 VASIKAKKG----LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEIS 242 A+ +A K L +S ER + E +KLL A + I+ M + + L QEI+ Sbjct: 179 FATFEAMKSHSPLLAKISVERSFIEFDKLLMAPHWRKGILAMIACQAYDYLPGLGQQEIA 238 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L QL+ + F + I+ +S Q+ K L K + + L++ ++ Sbjct: 239 LKQLTVSLADGFTFSDHHQAWAYLIISLSIQNPKPFLKAWKTSNDFQRCVAQLVTLYHIR 298 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + P K Y YG K+ ++ +L D +I Q+ + K Sbjct: 299 QER-----PFEKLDIYQYGKKLT----RLIESLRQAMGQDVDMAYIEQLDQALAIHDKHD 349 Query: 363 FPLTGDDVVK-YGIPPGKKVGNIL 385 + G ++K +G+ PG ++G +L Sbjct: 350 IVVNGSHLIKNFGLKPGPELGVML 373 >gi|324991235|gb|EGC23169.1| polyA polymerase family protein [Streptococcus sanguinis SK353] gi|325687387|gb|EGD29408.1| polyA polymerase family protein [Streptococcus sanguinis SK72] Length = 399 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 115/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A + +++ D VA L+ +S ERI Sbjct: 142 ENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|149198773|ref|ZP_01875816.1| putative poly(A) polymerase [Lentisphaera araneosa HTCC2155] gi|149138209|gb|EDM26619.1| putative poly(A) polymerase [Lentisphaera araneosa HTCC2155] Length = 385 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 118/367 (32%), Positives = 175/367 (47%), Gaps = 29/367 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGGAVRD L+ + V DIDIA+ I P + YK T I +GT+ ++ K ++ Sbjct: 15 IVGGAVRDRLLGIDVVDIDIASAIHPYDFKDLSKSLGYKTFDTGIEHGTVTVLIDGKPYE 74 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 TT R+D+ DGR A V F++ + D RRDFTINA+ A K+ID G NDL+N+ + Sbjct: 75 HTTFRTDVSCDGRNANVSFSKTIEEDLSRRDFTINAI-ALLGKKIIDPFNGQNDLKNKIL 133 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK-AKKGLKILSSERIWSEI 209 K +G A R EDYLRI+R RF + + +ID+D L+A+ + A K + +S ERI E Sbjct: 134 KTVGTAEERFSEDYLRIIRAARFASRL-KMSIDTDLLIAAKELAPKITQHVSVERISDEF 192 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL--SQVIEAEQVFEWKIDSLLRFI 267 K +++ N I +F ++ ++L +V A Q D F Sbjct: 193 KKAQGHAEEFLKVLYSMN--ILDVLFDSTKDHYANELWWEEVGRAAQY-----DGETYFA 245 Query: 268 VLISWQ-DKKSILSMAKKFSLPREIRYFLISFFN--CNFNQKTLSIPEIKKLFYLYGDKV 324 L+ DK + S+ +++ L R I F FN S+ + ++ GD Sbjct: 246 ALVRPSGDKNKVESICREYKLSRSIIRFSCQLVEHLAYFNTGEFSLEKSYQILKSCGDNS 305 Query: 325 MIAKLKIFLALHYNNLTHQDTCF-----ILQVLSDIIHW-KKPLFPLTGDDVVKYGIPPG 378 ++ LH N+ Q L L DI K PL + G D+ I PG Sbjct: 306 S----RLLNYLH--NVIEQTEPRPALEQTLNQLDDIDQAIKNPL--INGGDLHTMNIKPG 357 Query: 379 KKVGNIL 385 + +IL Sbjct: 358 PEFRHIL 364 >gi|260587369|ref|ZP_05853282.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Blautia hansenii DSM 20583] gi|260542236|gb|EEX22805.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Blautia hansenii DSM 20583] Length = 415 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 113/391 (28%), Positives = 182/391 (46%), Gaps = 58/391 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDSL+ S D DI T+ P V IF +T + T + +GT+ ++ K+ F++ Sbjct: 26 VGGCVRDSLLFRSPADWDITTSAKPLEVKEIFKRT----VDTGLQHGTVTVLIEKEGFEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V+FT + + D RRDFTINA+ + ++D GG DL+++ Sbjct: 82 TTYRIDGEYEDSRHPKEVIFTGNLEEDLKRRDFTINAMAYNDAVGLVDVFGGRQDLQDKI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSERI 205 ++ +G+ R ED LRILR RF A G EK ++ ++A LK +S+ERI Sbjct: 142 VRCVGNPQERFTEDALRILRAVRFSAQLGFSIEEKTKEAAKVLAPT-----LKNISAERI 196 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW----KID 261 +E+ KLL +KNP + + + GI K + + D L + E+ + D Sbjct: 197 QTELLKLLVSKNP-HYLKTAWELGITKIVLPE-----FDVLMETSMGEKTLKAFAYTSAD 250 Query: 262 SLLRFIVLISWQDKKSILS--MAKKFSLPREIRY---------FLISFFNCNFNQKTLSI 310 R VL + +K S +AKK + R +R+ L+ + C + Sbjct: 251 KAERLAVLFANMEKTPEKSRDLAKK--ILRRLRFDNDTINKVSELVFWHTCPWEC----- 303 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC-------------FILQVLSDIIH 357 KK + + A + L +H L ++ F +++ Sbjct: 304 --TKKAVRIVLSQCTPALFPVLLNVHRAELLAEEKPDKENLEFLEKSGEFYREIMEKKEC 361 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + ++G D ++ GI PGKK+G +L C Sbjct: 362 ISIKMLAVSGKDFIEMGIEPGKKIGELLSSC 392 >gi|241889742|ref|ZP_04777040.1| CCA-adding enzyme [Gemella haemolysans ATCC 10379] gi|241863364|gb|EER67748.1| CCA-adding enzyme [Gemella haemolysans ATCC 10379] Length = 386 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 119/209 (56%), Gaps = 7/209 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I+IL + N+ ++ VGG VRD L+ DIDI T LPD+V ++F K+ I T I Sbjct: 14 IDILKIFNQNGYEAYFVGGCVRDYLLGEDFSDIDITTNALPDQVKKVFRKS----IDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ I+ +++TT R+ D KV F + + D RRDFTINA+ D G Sbjct: 70 QHGTVTILVNGDSYEVTTFRTEEDYANHRSPEKVEFVSNLREDLDRRDFTINAMALDYNG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 K+ DY G +DL ++ I+ + + + R ED LR+LR FRF + G + I+++ L A K Sbjct: 130 KLFDYHNGDSDLSSKIIRTVNNPNERFYEDALRMLRAFRFSSKLGFE-IENNTLNAIKKN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAI 222 + +K +S ERI +E KLL K L ++ Sbjct: 189 AELIKFVSIERIVNEFKKLLAGKGNLRSL 217 >gi|327489640|gb|EGF21432.1| polyA polymerase family protein [Streptococcus sanguinis SK1058] Length = 399 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GLNDL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLNDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 ENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|312793903|ref|YP_004026826.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181043|gb|ADQ41213.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor kristjanssonii 177R1B] Length = 394 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 129/240 (53%), Gaps = 13/240 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F KT IP Sbjct: 6 NEPMKVIKTLNQHGFKAYLVGGCLRDYLLSKEPEDFDIATDAKPEDVIHLFEKT----IP 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 62 TGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++ A Sbjct: 122 DEGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLSFV-IENKTFEALK 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEISLD 244 K LK +S ERI E++K LE+KN + +Y + + +I+L + +I D Sbjct: 181 SLKDLLKKISQERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYLYLSQIDFD 240 >gi|210613802|ref|ZP_03289916.1| hypothetical protein CLONEX_02127 [Clostridium nexile DSM 1787] gi|210151011|gb|EEA82019.1| hypothetical protein CLONEX_02127 [Clostridium nexile DSM 1787] Length = 465 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 8/239 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V K F + I++ L + ++ VGG VRDS++ D DI T+ P+ +F Sbjct: 17 VHMKIFLPEKVNFIINKLKENGYEAYAVGGCVRDSVLGRVPDDWDITTSATPNETKALFR 76 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDF 122 +T T I +GTI ++ K+ F++TT R D D R+ + VVFTR K D LRRDF Sbjct: 77 RT----FDTGIEHGTITVLVDKEAFEVTTYRVDGEYEDSRHPREVVFTRSLKEDLLRRDF 132 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TINA+ +++ ++D GG+ DL+ + I+ +G+A R ED LRILR RF A G + I Sbjct: 133 TINAMAYNEEEGLVDIFGGIEDLQRKMIRCVGNARERFGEDALRILRAVRFAAQLGFR-I 191 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + + K L +S+ERI E+ K+L + NP + Y GI K + + E+ Sbjct: 192 EDETMEGIRKLAPTLANISAERIQVELVKMLVSPNP-GLLALSYELGITKVVLPEFDEM 249 >gi|325847164|ref|ZP_08169963.1| HDIG domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480944|gb|EGC83990.1| HDIG domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 441 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 134/224 (59%), Gaps = 9/224 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ + DID+ T P+ +M IFS K+I +GTIK+I + K Sbjct: 16 ETYLVGGAVRDKLLGKEIHDIDLTTRARPNDIMNIFSD--LKLIDIGKKFGTIKVIYKSK 73 Query: 88 YFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ITT R++ D R+ ++ F+ + D RRDFTINA+ A ++G +ID GG DL Sbjct: 74 EYEITTFRAESSYKDKRHPDEISFSNTIEEDLKRRDFTINAM-AIRKGNLIDLFGGKKDL 132 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 + I+ +G+ + RI EDYLR LR R FA + +I+ D L A+IK G ++ +S ER Sbjct: 133 ERKIIRAVGNPYERIEEDYLRALRAVR-FATVLDFSIE-DNLKAAIKNMAGHIEEISKER 190 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLS 247 I E++K+L AKNP I + + IF +V++ + DQ S Sbjct: 191 IRDEVDKILLAKNPSRGIRLLDELNLLAYIFPEVKKMVGFDQHS 234 >gi|170760612|ref|YP_001787688.1| polyA polymerase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407601|gb|ACA56012.1| polyA polymerase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 450 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 3/207 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P VM IF YK+IPT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVMNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R K V FT + K D RRD TINA+ + + ++ Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKTRL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +GD+ R ED LR+LR RF + +S L + + Sbjct: 137 VDYFHGLEDLNNKIIRCVGDSKDRFNEDSLRMLRCIRFASQLNFHMEESTKLNIR-ELSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 + +S ERI E+ K+L + P+ I Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGI 222 >gi|327462287|gb|EGF08614.1| polyA polymerase family protein [Streptococcus sanguinis SK1] Length = 399 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 115/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A + +++ D VA L+ +S ERI Sbjct: 142 ENQILRAVGTAAERFNEDALRIMRGFRFQATL-DFDLEQDTFVAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|295102217|emb|CBK99762.1| tRNA nucleotidyltransferase/poly(A) polymerase [Faecalibacterium prausnitzii L2-6] Length = 403 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 112/203 (55%), Gaps = 5/203 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L++ + VGG VRDSL+ L+ D D+ T P++VM +F + + IPT + + Sbjct: 12 LLDALHRAGFAAYAVGGCVRDSLLGLAPHDWDLCTAARPEQVMELFGEK--QCIPTGLQH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + + ++ITT R++ +DGR+ V F D + D RRDFTINA+ + + Sbjct: 70 GTVTVKRDGRLYEITTFRTEGSYSDGRHPDSVAFVPDVREDLARRDFTINAMAYSAEEGL 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D GG DL ++ +G+ R ED LRILR +RF A +G ID A+ + Sbjct: 130 CDPFGGQEDLARGVVRAVGEPLRRFEEDALRILRLYRFAARFG-FVIDETTEAAAKQLAA 188 Query: 196 GLKILSSERIWSEINKLLEAKNP 218 L +S ERI E+NKLL A P Sbjct: 189 HLDCVSVERIEEELNKLLSAPKP 211 >gi|315222652|ref|ZP_07864541.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus anginosus F0211] gi|315188338|gb|EFU22064.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus anginosus F0211] Length = 399 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIA++ P+ RIF +T I I +GT+ ++ Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIASSSYPEETKRIFERT----IDVGIEHGTVLVLEDNH 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R K D RRDFTINAL D+ G VID GL+DL Sbjct: 82 EYEVTTFRTEDIYVDYRRPSHVTFVRSLKEDLKRRDFTINALALDEAGNVIDLFEGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + + ++ +G R ED LRI+R FRF A G ++D+D A LK +S ER Sbjct: 142 KQQILRAVGTPSERFNEDALRIMRGFRFQASLG-FSLDTDTFQAMKMCAPLLKKISVERT 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLTA 210 >gi|168183936|ref|ZP_02618600.1| polyA polymerase family protein [Clostridium botulinum Bf] gi|237795817|ref|YP_002863369.1| polyA polymerase family protein [Clostridium botulinum Ba4 str. 657] gi|182672935|gb|EDT84896.1| polyA polymerase family protein [Clostridium botulinum Bf] gi|229261764|gb|ACQ52797.1| polyA polymerase family protein [Clostridium botulinum Ba4 str. 657] Length = 450 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 5/208 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R K V FT + K D RRD TINA+ + + ++ Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKTRL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-K 194 +DY GL DL N+ I+ +GD+ R+ ED LR+LR RF + +S L SI+ Sbjct: 137 VDYFHGLEDLNNKIIRCVGDSKDRLNEDSLRMLRCIRFASQLNFHMEESTKL--SIRELS 194 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAI 222 + + +S ERI E+ K+L + P+ I Sbjct: 195 RNIANVSMERIRDELCKILVSSQPVYGI 222 >gi|157150439|ref|YP_001450406.1| tRNA CCA-pyrophosphorylase [Streptococcus gordonii str. Challis substr. CH1] gi|189081882|sp|A8AX96|CCA_STRGC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|157075233|gb|ABV09916.1| polynucleotide adenylyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 399 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 49/377 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G++ID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQLIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G R ED LRI+R FRF A +++ D L A L+ +S ERI Sbjct: 142 ENRILRAVGTPAERFNEDALRIMRGFRFQATLN-FDLEQDTLSAMTDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA---KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 + E +KLL A + L A+ + +G I E D + EQ+FE D Sbjct: 201 FIEFDKLLLAPFWRKGLEAL--LTSGAI---------EFLPDLKGSRAKLEQLFELDSD- 248 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI--------- 313 F S Q ++L K + R +R + S F ++ I EI Sbjct: 249 ---FCFSASEQAWAALLLALKTQEVQRFLRIWKTS---REFAKRVADIVEIVTIRSERDL 302 Query: 314 -KKLFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 K+ Y Y +++ ++ LA+ ++ + + D IH K+ + G Sbjct: 303 TKRDCYDYDIDLLLQAEELRQAQGLAVDFSAIHNLDASLT-------IHSKQEMVVNGGM 355 Query: 369 DVVKYGIPPGKKVGNIL 385 + +G PG K+G IL Sbjct: 356 LMRDFGFEPGPKLGQIL 372 >gi|27468063|ref|NP_764700.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis ATCC 12228] gi|57866965|ref|YP_188604.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis RP62A] gi|282876109|ref|ZP_06284976.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis SK135] gi|293366574|ref|ZP_06613251.1| polyA polymerase [Staphylococcus epidermidis M23864:W2(grey)] gi|73619863|sp|Q8CP70|CCA_STAES RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619864|sp|Q5HP86|CCA_STAEQ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|27315608|gb|AAO04742.1|AE016747_239 putative poly(A) polymerase [Staphylococcus epidermidis ATCC 12228] gi|57637623|gb|AAW54411.1| polyA polymerase [Staphylococcus epidermidis RP62A] gi|281295134|gb|EFA87661.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis SK135] gi|291319343|gb|EFE59712.1| polyA polymerase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735392|gb|EGG71684.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis VCU045] gi|329737267|gb|EGG73521.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis VCU028] Length = 400 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 113/214 (52%), Gaps = 8/214 (3%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 NKG K+ VGG+VRD +M + D+DI T+ PD + IF KT IP +GTI + Sbjct: 18 NKGF-KAYFVGGSVRDYIMQRPIHDVDITTSATPDEIESIFDKT----IPVGKEHGTINV 72 Query: 83 ICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + + ++ITT RS+ I R ++V F RD D RRDFT+NA+ D ++ DY Sbjct: 73 VFQNDNYEITTFRSEDEYIDHRRPSEVYFVRDLYQDVQRRDFTMNAIAMDLNYRLYDYFN 132 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G D+ NR I+ +G R ED LRI+R RF + + IDSD L A ++ L Sbjct: 133 GQQDINNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLHAMSSQISDIQYL 191 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 S ER+ E+ KL+ N + M N F I Sbjct: 192 SVERVVVELKKLIMGNNVKQSFEVMQNMKAFNYI 225 >gi|291460610|ref|ZP_06600000.1| CCA-adding enzyme [Oribacterium sp. oral taxon 078 str. F0262] gi|291416801|gb|EFE90520.1| CCA-adding enzyme [Oribacterium sp. oral taxon 078 str. F0262] Length = 441 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 111/395 (28%), Positives = 179/395 (45%), Gaps = 40/395 (10%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L ++ VGG VRDSL+ + +D DI ++ P+ + R+F +T + T I Sbjct: 30 RIIGRLESAGFEAYAVGGCVRDSLLGRTPEDWDITSSARPEELKRLFKRT----VDTGIQ 85 Query: 77 YGTIKIIC-------RKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINAL 127 +GT+ ++ R + F++T+ R D DGR+ + V FT D RRDFTINA+ Sbjct: 86 HGTVTVLIGGGEGGKRAQAFEVTSYRVDGEYKDGRHPESVRFTPSLSEDLSRRDFTINAM 145 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +++ ++D G+ DL R I+ +G+A R ED LR+LR RF A I L Sbjct: 146 AYNEKSGIVDLFQGMEDLERREIRAVGEAELRFREDALRMLRALRFSAQL-RFRIAPGTL 204 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP--LNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A +GL +S ERI E+ KLL + +P + + E F ++ SL + Sbjct: 205 EAVRSLARGLSRVSKERIRGELTKLLLSDSPEQMELVFQTGLAPYVSEHFPEIASPSLPE 264 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 LS +E E W + LLR Q K IL ++ + R S + + Sbjct: 265 LSGDMEREAFLRWGM--LLRG----REQLAKRIL---RELKMDRATIDRAGSIAALHGER 315 Query: 306 KTLSIPEIKKLFYLYGDKVMIA--KLKIFLALHYNNLTH--------QDTCFILQVLSDI 355 PE ++L YG+++ + ++ LALH+ Q + L + Sbjct: 316 IPEEAPEARRLLSRYGEELFFSWLSMEEALALHFPREREAPLPGERSQGKIRRARALGEE 375 Query: 356 IHWKKPLFPLT-----GDDVVKYGIPPGKKVGNIL 385 I L+ G+D+ + GIP G + +L Sbjct: 376 ILKNGDCLSLSALMINGEDLAELGIPRGPEYSAVL 410 >gi|329725402|gb|EGG61885.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis VCU144] Length = 400 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 113/214 (52%), Gaps = 8/214 (3%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 NKG K+ VGG+VRD +M + D+DI T+ PD + IF KT IP +GTI + Sbjct: 18 NKGF-KAYFVGGSVRDYIMQRPIHDVDITTSATPDEIESIFDKT----IPVGKEHGTINV 72 Query: 83 ICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + + ++ITT RS+ I R ++V F RD D RRDFT+NA+ D ++ DY Sbjct: 73 VFQNDNYEITTFRSEDEYIDHRRPSEVYFVRDLYQDVQRRDFTMNAIAMDLNYRLYDYFN 132 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G D+ NR I+ +G R ED LRI+R RF + + IDSD L A ++ L Sbjct: 133 GQQDINNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLHAMSSQISDIQYL 191 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 S ER+ E+ KL+ N + M N F I Sbjct: 192 SVERVVVELKKLIMGNNVKQSFEVMQNMKAFNYI 225 >gi|268610303|ref|ZP_06144030.1| poly A polymerase family protein [Ruminococcus flavefaciens FD-1] Length = 439 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 111/202 (54%), Gaps = 5/202 (2%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D+ IL L ++ VGG VRD++M S D DI T LP++V+ F YKVIPT Sbjct: 5 DVDEILERLESCGFEAYTVGGCVRDTIMGRSAHDTDITTNALPEQVIAAFDG--YKVIPT 62 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQ 131 + +GT+ I+ ++ITT R D D R + V FT D RRDFT+NA+ D+ Sbjct: 63 GLKHGTVTILKNSVPYEITTYRIDGEYKDSRRPETVEFTASITEDLARRDFTMNAIAMDR 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G + D GG D+ N I+ +GD R ED LRI+R RF A G +I+ A Sbjct: 123 HGNIADPFGGKEDIENGIIRCVGDPVQRFTEDALRIMRAVRFAAQLG-FSIEEKTAEAVH 181 Query: 192 KAKKGLKILSSERIWSEINKLL 213 K+ LK +S ERI SE++K+L Sbjct: 182 SMKERLKNISMERIRSELDKIL 203 >gi|224476578|ref|YP_002634184.1| tRNA CCA-pyrophosphorylase [Staphylococcus carnosus subsp. carnosus TM300] gi|254813699|sp|B9DNX1|CCA_STACT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|222421185|emb|CAL27999.1| putative poly(A) polymerase [Staphylococcus carnosus subsp. carnosus TM300] Length = 400 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 7/186 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD LM+ + DIDI T+ PD + IF+ T IP +GTI ++ + +++ Sbjct: 26 VGGAVRDYLMDRPIHDIDITTSASPDEIEGIFTNT----IPIGKEHGTINVVYNHENYEV 81 Query: 92 TTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ + R ++V+F RD D RRDFTINA+ D Q + DY G +D++N+ Sbjct: 82 TTFRAEGEYEDHRRPSEVIFVRDLYKDVERRDFTINAIAMDNQFNIKDYFNGYSDIQNKL 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 IK +G+ + R ED LRILR RF + IDSD A + + LS ERI E+ Sbjct: 142 IKTVGNPYERFNEDALRILRGLRFKSQL-RFEIDSDTYKAMQEKIADTEYLSIERIIIEL 200 Query: 210 NKLLEA 215 KLLE Sbjct: 201 RKLLEG 206 >gi|227486244|ref|ZP_03916560.1| possible tRNA adenylyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227235780|gb|EEI85795.1| possible tRNA adenylyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 449 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 9/224 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 KS +VGG VRD LM D+DIAT PD + +F YK + ++GTIK++ + Sbjct: 21 KSYLVGGFVRDKLMGKPPSDVDIATKAFPDEIKEVFKD--YKTLDVGKAFGTIKLVADDR 78 Query: 88 YFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ITT R D R V+F + D RRDFTINA+ A + ++ID GG DL Sbjct: 79 DYEITTFRKDFSYKDKRRPGSVIFADTIEEDLKRRDFTINAM-ALSKDELIDPYGGQADL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-KGLKILSSER 204 + I+ +G+ + RI EDYLR LR RF A+ G +I++D L +I++K K L +S ER Sbjct: 138 EAKIIRAVGNPYERINEDYLRALRAVRFAANLG-FDIEND-LKEAIRSKVKNLAYISVER 195 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLS 247 +EI+K+L +P + + G+ IF +V+ + DQ S Sbjct: 196 QTAEIDKILLGPDPARGLRLLDETGLLGGIFPEVKAMVGFDQHS 239 >gi|182419878|ref|ZP_02951116.1| cca-adding enzyme [Clostridium butyricum 5521] gi|237668756|ref|ZP_04528740.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376247|gb|EDT73831.1| cca-adding enzyme [Clostridium butyricum 5521] gi|237657104|gb|EEP54660.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 438 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 126/428 (29%), Positives = 202/428 (47%), Gaps = 74/428 (17%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 SD+ I+++L + + +VGG VRD L+N D DI T P+ V R+F K VI Sbjct: 9 SDVQYIINVLIENGYEGYMVGGCVRDLLINREPNDYDITTNAKPEVVARLFDK----VIL 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ K +++TT R D D R+ + V F D K D RRDFTINA+ + Sbjct: 65 TGLKHGTVTVVINKVQYEVTTYREDGEYKDSRHPENVKFVTDIKNDLSRRDFTINAMAYN 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ +IDY GL+DL+N+ I+ +G+ R ED LR+LR RF K +S ++ S Sbjct: 125 KEKGLIDYFDGLSDLKNKVIRTVGNPEKRFTEDSLRMLRAVRFAVQLDFKIEES--IIQS 182 Query: 191 IKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 IK K L+ +S ERI E NK++ KNP N + ++ I K + D+ + ++ Sbjct: 183 IKILNKNLEFISKERIREEFNKII-LKNP-NGLKLLHECSILKYVADDLDKAYDYYINDK 240 Query: 250 IEAEQVFEW--------KIDSLLRFIVLI-------SWQDKKS------ILSMAKKFSLP 288 I ++E K D LR +L W +K I S + Sbjct: 241 INCYNLYEHLILSSCNIKKDLSLRLTMLFHDLGKLKDWNNKLEKVDNIFIESACIAEKIL 300 Query: 289 REIRY---------FLISFFNCNFNQKTLSIPEIKKLF-----YLYGDKVMIAKLKI--- 331 R ++Y LI++ + + K IKKL L+ D + + K I Sbjct: 301 RSLKYDNGTIKKVKTLITYMHSDLEDKV----SIKKLLNIIDVELFEDLIKVKKAHIMSE 356 Query: 332 ------FLALH--YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 FL + Y ++ ++ CF ++ + + G+D++K G+ GK VG Sbjct: 357 NIEEVKFLNIEKLYCDIIEKNECFRIRDMR-----------INGEDIIKIGVKKGKDVGI 405 Query: 384 ILVH--CK 389 +L + CK Sbjct: 406 MLNYLLCK 413 >gi|167765977|ref|ZP_02438030.1| hypothetical protein CLOSS21_00468 [Clostridium sp. SS2/1] gi|167712334|gb|EDS22913.1| hypothetical protein CLOSS21_00468 [Clostridium sp. SS2/1] gi|291558771|emb|CBL37571.1| uncharacterized domain HDIG [butyrate-producing bacterium SSC/2] Length = 448 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 122/215 (56%), Gaps = 18/215 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRDS++ + D DI T+ P V IF T + T I +GT+ ++ + Sbjct: 22 EAYIVGGCVRDSILGRTPGDWDITTSASPQEVKEIFDHT----VDTGIEHGTVTVLMNHE 77 Query: 88 YFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVG 140 +++TT R DG+Y +V FT+ + D LRRDFTINA+ Y D +G +ID Sbjct: 78 PYEVTTYR----VDGKYEDHRRPKEVHFTKSLREDLLRRDFTINAMAYNDSEG-IIDMYD 132 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G+ DL+N+ I+ +G+A R ED LRILR RF A G + I+ A K LK + Sbjct: 133 GMTDLKNQIIRCVGEAKKRFDEDALRILRALRFQAQLGFQ-IEEKTEEAIKNQAKFLKDI 191 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S+ERI E+ KL+ + +P +V+ Y G+ K IF Sbjct: 192 SAERIQVELEKLITSAHP-EVLVNAYKLGVTKIIF 225 >gi|323351652|ref|ZP_08087306.1| polyA polymerase family protein [Streptococcus sanguinis VMC66] gi|322122138|gb|EFX93864.1| polyA polymerase family protein [Streptococcus sanguinis VMC66] Length = 399 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 109/374 (29%), Positives = 180/374 (48%), Gaps = 43/374 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNH 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 ENRILQAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 + E +KLL A + + G + FL + S +L ++ + F + Sbjct: 201 FIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFDLASDFRFSASEQAW 258 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI----------KK 315 +L++ D +++ KK+ RE F +K + EI K+ Sbjct: 259 SALLLAL-DVQNVKGFLKKWKTSRE------------FAKKVEDLVEIAAIRSERDLTKR 305 Query: 316 LFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 Y Y ++I ++ LA+ ++ + + D IH K+ + G + Sbjct: 306 DCYDYDIDLLIQAEELREAQGLAVDFSAIQNLDASL-------TIHSKQEMVVNGGMLMQ 358 Query: 372 KYGIPPGKKVGNIL 385 +G PG K+G IL Sbjct: 359 DFGFKPGPKLGQIL 372 >gi|293402195|ref|ZP_06646333.1| polyA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304302|gb|EFE45553.1| polyA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 452 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 126/248 (50%), Gaps = 12/248 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I I+++L + ++ VGG VRD LM D DI T LP M+IF+ Y+VIPT Sbjct: 9 MIKIVTILKEAGYEAYFVGGCVRDMLMQRKTHDYDITTNALPQETMQIFAAKGYQVIPTG 68 Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQ 132 I +GTI ++ K+ +ITT R D R+ + ++FT+D K D RRDFT+NA+ D Sbjct: 69 IKHGTITVLVNKEPVEITTYRIEQTYHDHRHPSTIIFTKDLKEDLKRRDFTMNAIAYDPT 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G D+ + I+ +GDA R ED LR+LR RF + +D A + Sbjct: 129 YGLYDPFHGAQDIAQKRIRCVGDATTRFQEDALRMLRALRFSC-VLDFTLDEACGKAIQQ 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ERI E N+LL + N + +Y+ + EI L S + Sbjct: 188 NHNLLRYVSKERIREEFNRLLMGEKA-NTLQLLYDFHVLDEI--------LPGYSALYGH 238 Query: 253 EQVFEWKI 260 EQ W I Sbjct: 239 EQKTPWHI 246 >gi|125717916|ref|YP_001035049.1| tRNA CCA-pyrophosphorylase [Streptococcus sanguinis SK36] gi|166233887|sp|A3CMU4|CCA_STRSV RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|125497833|gb|ABN44499.1| TRNA nucleotidyltransferase, putative [Streptococcus sanguinis SK36] Length = 399 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/190 (38%), Positives = 114/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 ENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|325694589|gb|EGD36498.1| polyA polymerase family protein [Streptococcus sanguinis SK150] Length = 399 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/190 (38%), Positives = 114/190 (60%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A + +++ D A L+ +S ERI Sbjct: 142 ENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLLA 210 >gi|42523306|ref|NP_968686.1| poly A polymerase [Bdellovibrio bacteriovorus HD100] gi|39575512|emb|CAE79679.1| poly A polymerase [Bdellovibrio bacteriovorus HD100] Length = 397 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 + GG VRD+L+ + D+D+AT P++V +FSKT + S+G ++++ + Sbjct: 30 LAGGCVRDALLGVQAHDLDLATNATPEKVESLFSKT----VNVGKSFGVMRVLVEGADIE 85 Query: 91 ITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 + T R+D +DGR + V + D+ RRDFT+NAL+ D +V+DYV G DL+ R Sbjct: 86 VATFRNDGTYSDGRRPENVVFSSPQEDAQRRDFTVNALFYDLATAQVLDYVEGQKDLKAR 145 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +GDA R ED+LR+LR RF A + ++ A K + +K +S ERI E Sbjct: 146 VLRTVGDAERRFEEDHLRLLRAARFSAQLNFE-LEPVSFAAVKKMAEKVKSVSGERIREE 204 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIF 235 + KLL+ ++ + + M + G+ K +F Sbjct: 205 MTKLLKTEHADHGLQVMKDSGLMKVLF 231 >gi|282882323|ref|ZP_06290953.1| tRNA adenylyltransferase [Peptoniphilus lacrimalis 315-B] gi|281297830|gb|EFA90296.1| tRNA adenylyltransferase [Peptoniphilus lacrimalis 315-B] Length = 445 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 6/237 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D+ ++L L+ KS IVGG +RD L+ + D DI T P +V +F + YK+ Sbjct: 2 DKDVFDLLEKLDNHGYKSYIVGGCLRDILLGIRPNDFDITTNARPSQVKEVFRE--YKIF 59 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I YGTI + R + ++ITT RS+ +D R +V+F D RRDFTINA+ Sbjct: 60 HYGIKYGTITVEYRDRLYEITTFRSEGTYSDNRRPDRVLFLDSIDDDLARRDFTINAMAM 119 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D+ + D G+ DL+N+ I+ GDA+ RI ED LRILR RF + + +D + A Sbjct: 120 DKSYNIYDPFNGIRDLKNKIIRACGDANKRIEEDALRILRAIRFATRF-KFYLDEELFDA 178 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQ 245 + LK ++ ERI+SEI K++ NP + M GI +F +++ + DQ Sbjct: 179 ISLNRNLLKNIARERIFSEICKIITYDNPSYGFLLMEETGILDILFPSLRKTVGFDQ 235 >gi|291548183|emb|CBL21291.1| uncharacterized domain HDIG [Ruminococcus sp. SR1/5] Length = 446 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 7/204 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL +LN+ ++ +VGG VRDS+++ D DI T+ LP++V +F +T + T I Sbjct: 11 QILHILNEAGYEAYVVGGCVRDSILDRVPGDWDITTSALPEQVKELFHRT----VDTGIQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ K+ F++TT R D DGR+ V FTR + D RRDFTINA+ Sbjct: 67 HGTVTVMMGKEGFEVTTYRVDGEYHDGRHPDAVTFTRSLEEDLKRRDFTINAMAYHPGHG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG+ D+ + I+ +GD R ED LR+LR RF A G ++ + A + Sbjct: 127 LVDLFGGMEDINRKIIRCVGDPVERFTEDALRMLRAVRFSAQLG-FTVEENTKAALARMS 185 Query: 195 KGLKILSSERIWSEINKLLEAKNP 218 L+ +S+ERI +E+ KLL + +P Sbjct: 186 GNLEHVSAERIQTELVKLLVSDHP 209 >gi|116333429|ref|YP_794956.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus brevis ATCC 367] gi|122269884|sp|Q03S97|CCA_LACBA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116098776|gb|ABJ63925.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus brevis ATCC 367] Length = 397 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 105/384 (27%), Positives = 180/384 (46%), Gaps = 43/384 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L + + ++ VGG+VRD+++ + D+DIAT+ PD + +F +T + T I + Sbjct: 16 VLQTIEQAGYEAYFVGGSVRDTILGKEIHDVDIATSAYPDEIKHLFKRT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ ++ TT RS+ TD R +V F R D RRDFTINAL + G V Sbjct: 72 GTVMILDHGTGYETTTFRSESTYTDFRRPDQVTFVRSLAEDLKRRDFTINALAMKEDGTV 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GL DL++R I+ +GD R ED LR++R RF + I + L A + Sbjct: 132 IDLFDGLADLKHRQIRAVGDPQERFHEDALRMMRAVRFASQLN-FTIVPETLAAMTSHAE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI------FKEIFLDVQEISLDQLSQV 249 L+ ++ ER E+ KLL + P + + G+ F + +D++ ++ QL Q Sbjct: 191 LLRKIAVERTQVELLKLLTGQAPQQGLTDLLTTGLWQYCPDFADHKVDLERLTA-QLHQG 249 Query: 250 IEAE--------QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + F + +++ F L W+ +S + + + Sbjct: 250 ASTDLTAWTLLTTSFGLETNAITTF--LKHWKTANQTISAVQ-----------MTTKMAQ 296 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + Q +LS ++ + D++MIA + T + + Q + I KK Sbjct: 297 HLLQGSLSTWQV---YQCGEDQLMIANEAAVVL----GATDRSRELVAQWQNLPIQTKKA 349 Query: 362 LFPLTGDDVVKYGIPPGKKVGNIL 385 L +TG D+++ G+ PG ++G IL Sbjct: 350 L-AVTGRDLMQAGVQPGPQLGAIL 372 >gi|116328419|ref|YP_798139.1| poly A polymerase family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121163|gb|ABJ79206.1| Poly A polymerase family of protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 432 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 124/213 (58%), Gaps = 8/213 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+I I + K + ++GG+VRD L++ + D+ T++LPD+++ +F +T +P Sbjct: 19 EDIIRITQNIRKEGGECYLIGGSVRDLLLSKIPDEFDLTTSLLPDKILTLFKRT----VP 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + + ++ITT R D+ DGR + V F D RRDFT+NAL D Sbjct: 75 TGIKHGTVTVLIQDRSYEITTFRKDVDYIDGRRPEAVEFGVSLSEDLKRRDFTMNALALD 134 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + K +ID GL D++N+ I+ IGD R ED LR +R RF + G ++S+ A Sbjct: 135 LEAKRLIDEHSGLEDIQNKIIRTIGDPIERFTEDGLRPIRAIRFVSSLGFA-LESETAKA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 I+ + +S ER+ E+NK L++KNP ++ Sbjct: 194 IIQCRNITAKISKERVHDELNKTLKSKNPAPSL 226 >gi|116331148|ref|YP_800866.1| poly A polymerase family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124837|gb|ABJ76108.1| Poly A polymerase family of protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 432 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 124/213 (58%), Gaps = 8/213 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+I I + K + ++GG+VRD L++ + D+ T++LPD+++ +F +T +P Sbjct: 19 EDIIRITQNIRKEGGECYLIGGSVRDLLLSKIPDEFDLTTSLLPDKILTLFKRT----VP 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + + ++ITT R D+ DGR + V F D RRDFT+NAL D Sbjct: 75 TGIKHGTVTVLIQDRSYEITTFRKDVDYIDGRRPEAVKFGVSLSEDLKRRDFTMNALALD 134 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + K +ID GL D++N+ I+ IGD R ED LR +R RF + G ++S+ A Sbjct: 135 LEAKRLIDEHSGLEDIQNKIIRTIGDPIERFTEDGLRPIRAIRFVSSLGFA-LESETAKA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 I+ + +S ER+ E+NK L++KNP ++ Sbjct: 194 IIQCRNITAKISKERVHDELNKTLKSKNPAPSL 226 >gi|212696602|ref|ZP_03304730.1| hypothetical protein ANHYDRO_01142 [Anaerococcus hydrogenalis DSM 7454] gi|212676333|gb|EEB35940.1| hypothetical protein ANHYDRO_01142 [Anaerococcus hydrogenalis DSM 7454] Length = 371 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 9/224 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ + DID+ T P+ +MRIFS K+I +GTIK+I + K Sbjct: 16 ETYLVGGAVRDRLLGKEIHDIDLTTRARPNDIMRIFSD--LKLIDIGKKFGTIKVIYKSK 73 Query: 88 YFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++IT+ R++ D R+ ++ F+ + D RRDFTINA+ A ++G ID GG DL Sbjct: 74 EYEITSFRAESSYKDKRHPDQISFSNTIEEDLKRRDFTINAM-AQRKGDFIDLFGGKKDL 132 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 + I+ +G+ + RI EDYLR LR R FA + +I+ D L +IK G + +S ER Sbjct: 133 ERKIIRAVGNPYERIEEDYLRALRAVR-FATVLDFSIE-DNLKDAIKNMAGHIDEISKER 190 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLS 247 I E++K+L AKNP I + + IF +V++ + DQ S Sbjct: 191 IRDEVDKILLAKNPSRGIRLLDELNLLAYIFPEVKKMVGFDQHS 234 >gi|302384827|ref|YP_003820649.1| Polynucleotide adenylyltransferase region [Clostridium saccharolyticum WM1] gi|302195455|gb|ADL03026.1| Polynucleotide adenylyltransferase region [Clostridium saccharolyticum WM1] Length = 406 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 185/377 (49%), Gaps = 23/377 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ LN ++ +VGG VRDSL+ +D DI T+ P++V IF +T + T I + Sbjct: 13 IIEQLNTNGFEAYVVGGCVRDSLLGRMPEDWDITTSAKPEQVKEIFKRT----VDTGIQH 68 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINAL-YADQQGK 134 GT+ ++ + +++TT R D DGR+ K V FT D RRDFTINA+ Y+D++G Sbjct: 69 GTVTVLIDHEGYEVTTYRIDGEYEDGRHPKSVEFTGSLLEDLKRRDFTINAMAYSDREG- 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG DL RTI+ +G++ R ED LRILR RF A + ++ D A Sbjct: 128 LVDAFGGEMDLERRTIRCVGNSLDRFTEDALRILRAIRFSAQL-DFTLEEDTRAAISLMA 186 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + +S ERI E+ KLL + +P I +Y+ GI I +E ++ E E+ Sbjct: 187 PNMGKVSKERIQVELTKLLLSGHP-ERIKAVYDNGIAPYISPHFKEAG----RRLKETEK 241 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY---FLISFFNCNFNQKTLSIP 311 + + +R+ + ++ + + + K+ L + + L+SF+ +I Sbjct: 242 IGNLPLKKHMRWSGFLRQEEPQDAVRILKELKLDNDTIHQTKTLVSFWKMEIPADKPAIR 301 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYN---NLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + ++ K+F Y + Q + IL+ D I K +TG Sbjct: 302 HVMSGLSQELFEDLLCFQKVFCPNPYQAQLTVVEQFSEEILRA-GDCIRLKD--MAVTGR 358 Query: 369 DVVKYGIPPGKKVGNIL 385 +++ G+ PG ++G +L Sbjct: 359 ELMDAGMKPGPEMGAVL 375 >gi|256028296|ref|ZP_05442130.1| Poly(A) polymerase [Fusobacterium sp. D11] gi|289766225|ref|ZP_06525603.1| poly(A) polymerase [Fusobacterium sp. D11] gi|289717780|gb|EFD81792.1| poly(A) polymerase [Fusobacterium sp. D11] Length = 442 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 123/219 (56%), Gaps = 10/219 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LN+ K IVGGA+RD L+ L +D+D AT + + + +FS+ Y T Sbjct: 14 IKILNKLNEY-GKGYIVGGAIRDILLGLKPKDVDFATNLSYETLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 S+G ++I ++I R D+ G+ KV F D + D RRDFTINA+ +Q+ + Sbjct: 71 SFGVLRIRINNIDYEIAKFREDIY--GKEKKVSFVDDIRNDLARRDFTINAMAYNQKEGI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAK 194 ID G D+ NR I FIG+A RI+ED LR+LR FRF + N S+ + +IK + Sbjct: 129 IDLYNGQKDIENRIINFIGNAEERIIEDPLRVLRSFRFMSRL---NFSLSENTIEAIKKQ 185 Query: 195 KG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 K LK + ERI E +KLL +N N + M + G+ + Sbjct: 186 KDLLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLE 224 >gi|253581048|ref|ZP_04858309.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847711|gb|EES75680.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 441 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 22/228 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL +L K ++ +VGG VRDS++ S D DI T+ P++V +F +T + T + Sbjct: 11 TILHILEKAGYEAYVVGGCVRDSILGRSPDDWDITTSAKPEQVKALFHRT----VDTGLQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ K+ +++TT R D DGR+ K V FT K D RRDFTINA+ + Sbjct: 67 HGTVTVLMEKEGYEVTTYRVDGEYEDGRHPKEVTFTASLKEDLKRRDFTINAMAYNPSSG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GGL D+ + I+ +GD R ED LRI+R RF A G + + Sbjct: 127 LVDLFGGLEDIERKIIRCVGDPLERFTEDALRIMRAVRFSAQL--------GFAIEEETR 178 Query: 195 KGLKIL-------SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K LK+L S+ERI E+ KLL + +P + + Y GI E Sbjct: 179 KALKVLAPNLKHVSAERIQVELVKLLMSPHP-DYLRVAYEAGITAEFL 225 >gi|266620762|ref|ZP_06113697.1| poly A polymerase [Clostridium hathewayi DSM 13479] gi|288867623|gb|EFC99921.1| poly A polymerase [Clostridium hathewayi DSM 13479] Length = 410 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 7/208 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +D I+ LN+ ++ +VGG VRDSL+ +D DI T+ P V IFS+T I Sbjct: 9 ADAEQIIEKLNEHGFEAYVVGGCVRDSLLGKEPEDWDITTSARPGEVKSIFSRT----ID 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ ++ +++TT R D DGR+ K V FT D RRDFTINA+ + Sbjct: 65 TGIQHGTVTVMLNRQGYEVTTYRVDGEYEDGRHPKSVDFTTSLLEDLKRRDFTINAMAYN 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D GG+ DL NR I+ +G A +R ED LRILR RF A + D S Sbjct: 125 SREGLVDAFGGIEDLENRVIRCVGSAVNRFTEDALRILRAVRFSAQLDFRIEDETYEAIS 184 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNP 218 I A L+ +S ERI +E+ KLL + +P Sbjct: 185 IIAPN-LEKVSKERIATELTKLLLSSHP 211 >gi|315169724|gb|EFU13741.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1342] Length = 406 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID + G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLLDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|308069476|ref|YP_003871081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681] gi|305858755|gb|ADM70543.1| tRNA nucleotidyltransferase (tRNA adenylyltransferase) [Paenibacillus polymyxa E681] Length = 440 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 136/259 (52%), Gaps = 12/259 (4%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q H ++I+ L+ ++ VGG VRD L+ ++ D+D+ T+ P++V+ +F Sbjct: 11 QEMVLHGREVIHTLTAAGH---EAYWVGGCVRDELLGRAIHDMDLTTSAEPEQVIALFPH 67 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFT 123 VIPT I +GT+ ++ F++TT R S R +V F +D + D +RRDFT Sbjct: 68 ----VIPTGIQHGTVTVMQGGHAFEVTTFRTESGYADHRRPTEVAFVKDIREDLMRRDFT 123 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +NA+ + G+ +D GG DLR ++ +G A R ED LR+LR RF + + + Sbjct: 124 MNAIAMAEHGERVDPFGGEADLRAALVRCVGRAEERFEEDGLRMLRCIRFASVF-RFRVA 182 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF--KEIFLDVQEI 241 + I+ ++GL+ ++ ER+ E+ K+L +PL + + G+ ++ + ++ Sbjct: 183 YNTWKGMIRRREGLRYIAMERVRVELEKMLVGPDPLRGLEMLSRSGLLGCTKVPVPWEQC 242 Query: 242 SLDQLSQVIEAEQVFEWKI 260 + L +++ ++ W + Sbjct: 243 EVGALKGIVQLQEELRWGL 261 >gi|184155361|ref|YP_001843701.1| tRNA CCA-pyrophosphorylase [Lactobacillus fermentum IFO 3956] gi|226702069|sp|B2GC39|CCA_LACF3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|183226705|dbj|BAG27221.1| putative poly(A) polymerase [Lactobacillus fermentum IFO 3956] Length = 400 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 113/408 (27%), Positives = 177/408 (43%), Gaps = 68/408 (16%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS+T + T I + Sbjct: 16 ILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFSRT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG-----RYAKVVFTRDWKADSLRRDFTINALYADQQ 132 GT+ I+ ++ TT R++ G R V F R K D RRDFTINAL + Sbjct: 72 GTVMILDHGTGYETTTFRTE---SGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L + Sbjct: 129 GTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGMSQ 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF------KE-----IFLDVQEI 241 L+ ++ ERI E KLL K N + M + ++ KE +L Q + Sbjct: 188 NAALLEKIAVERIQVEFEKLLLGKAVQNGLAAMLDTKLYLHCPGLKEGGQGLQYLAQQPL 247 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS--FF 299 +L+ +Q +W L + K ++R FL Sbjct: 248 TLNNATQ----------------------AWGALAICLGLDKN-----QLRPFLKGWKLS 280 Query: 300 NCNFNQKTLSIPEIKKL---------FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350 N + ++P ++KL Y G + + + I N+L Q +Q Sbjct: 281 NGLITAVSRAVPLVEKLTTKTAGASDLYQAGQQAVADAVVI-----ANSLGGQVDPQAVQ 335 Query: 351 VLSDIIHWKKP-LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + K+ L G D++K G+ PG +G L ++ + Sbjct: 336 AAYQALPIKESGELALNGGDLIKAGVKPGPAMGKALTTLTKQVVEGQL 383 >gi|167462324|ref|ZP_02327413.1| tRNA CCA-pyrophosphorylase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381850|ref|ZP_08055804.1| tRNA CCA-pyrophosphorylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154238|gb|EFX46560.1| tRNA CCA-pyrophosphorylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 455 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 8/234 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L++ ++ VGG VRD L+ V+D DIAT LP++VM F K VIPT + Sbjct: 12 SVIQQLHRHGYEAYFVGGCVRDELLGRPVKDFDIATAALPEQVMGCFEK----VIPTGLQ 67 Query: 77 YGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ I+ F++TT R S+ R +V + D D RRDFT+NA+ G+ Sbjct: 68 HGTVTILAEGFAFEVTTFRKESEYEQFRRPKEVCYITDLNEDLRRRDFTMNAMAIGLDGR 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG DL ++ +G R ED LR+LR RF + Y + I+ A + A Sbjct: 128 IIDPFGGQEDLAKGLLRCVGQPDERYREDALRMLRAIRFASTYALR-IEECSWQALLSAA 186 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 L+ ++ ER+ +E+ +++ P +A+ + G++ E F D +SL+ L + Sbjct: 187 PLLRHIAMERVRTELERMVAGPAPEHAVDLLLKSGLW-EHFKDPLHVSLNMLGE 239 >gi|239827472|ref|YP_002950096.1| tRNA CCA-pyrophosphorylase [Geobacillus sp. WCH70] gi|259585843|sp|C5D3B5|CCA_GEOSW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|239807765|gb|ACS24830.1| Polynucleotide adenylyltransferase region [Geobacillus sp. WCH70] Length = 404 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 122/414 (29%), Positives = 193/414 (46%), Gaps = 40/414 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I+ L + ++ VGGAVRD L+N + DIDIAT+ LPD VM++F KT I Sbjct: 9 LGIIQTLQQHGYEAYFVGGAVRDLLLNREIGDIDIATSALPDEVMQLFPKT----IDIGS 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++TT R++ + R V F R D RRDFT+NA+ D +G Sbjct: 65 QHGTVVVVHNGISYEVTTFRTESEYEDYRRPGAVTFVRSLYEDLQRRDFTMNAIAMDAEG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 K+ID GG + NR I +GD R ED LR++R RF G ++D + A I+ Sbjct: 125 KLIDPFGGQEAIANRIICTVGDPKARFSEDALRMMRAIRFVGQLG-FSLDEETKQAIIEN 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L +S ER+ E KLLE A+ + G+F ++L + L ++A Sbjct: 184 AALLAHISVERMTMEFEKLLEGPFASRALSLLVETGLF--LYLPM----LRDKENELQAA 237 Query: 254 QVFEWK-IDS------LLRFIVLISWQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQ 305 + W+ +DS L +I+ I S + + LP R I+ ++ + Sbjct: 238 ARYNWRLLDSRGQRWGFLCYILCID-----SAADFLRAWKLPNRLIKEVEMAL------R 286 Query: 306 KTLSIPE----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 +IP K+ + +G + IA I N+ +S I KK Sbjct: 287 ILQTIPSSSDWTKERLFEFGLEHAIAAETIRSVASGENVEEHRKKLNELFMSLPIKTKKE 346 Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL--RKLI 412 L ++G+D++K +G P G V IL ++ I+ +E +H L R LI Sbjct: 347 L-AVSGNDIMKWFGKPGGPWVKEILTLIERAVIHGEVDNHKERIHEWLIHRNLI 399 >gi|329121121|ref|ZP_08249752.1| poly A polymerase [Dialister micraerophilus DSM 19965] gi|327471283|gb|EGF16737.1| poly A polymerase [Dialister micraerophilus DSM 19965] Length = 301 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 8/208 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 +DS+ + +L ++ K ++ VGG VRD L+N D DI T+ +PD++ I K Sbjct: 17 YDSNAVFLLEIIEKSGYEAYFVGGCVRDLLLNKKPSDWDITTSAIPDKIAEILHNFNVKT 76 Query: 71 IPTS-ISYGTIKIICRKKYFDITTLRSDLITDGRY--AKVVFTRDWKADSLRRDFTINAL 127 + + YGT+ I +K ++ITT R D+ + KV FT + K D RRDFTINA+ Sbjct: 77 FDNAGMKYGTVSAIINEKIYEITTFRRDIYRQNSHLPDKVFFTENLKEDLSRRDFTINAM 136 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +D+ G + DY GG +DL+ + +K +GD+ ED LR+ R RF G+ N + D Sbjct: 137 ASDRNGNIYDYFGGQSDLQRKILKTVGDSEKSFCEDALRLFRACRFL---GQLNFEPDND 193 Query: 188 VASIKAKKGLKI--LSSERIWSEINKLL 213 + S ++ LS ER+ EINKL+ Sbjct: 194 LISAMPYAFYRVSGLSLERVKREINKLV 221 >gi|325689780|gb|EGD31784.1| polyA polymerase family protein [Streptococcus sanguinis SK115] gi|325696420|gb|EGD38310.1| polyA polymerase family protein [Streptococcus sanguinis SK160] Length = 399 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 136/236 (57%), Gaps = 15/236 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLKRPIHDVDIASSSYPEETKHIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A + +++ D VA L+ +S ERI Sbjct: 142 ENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEA---KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 + E +KLL A + L A+ + +G I E D++E S +L ++ E + F + Sbjct: 201 FIEFDKLLLAPFWRKGLEAL--LTSGAI--EFLPDLKE-SRAKLERLFELDSEFRF 251 >gi|300860482|ref|ZP_07106569.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TUSoD Ef11] gi|300849521|gb|EFK77271.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TUSoD Ef11] gi|315144420|gb|EFT88436.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX2141] gi|315160448|gb|EFU04465.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0645] Length = 406 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 111/404 (27%), Positives = 194/404 (48%), Gaps = 52/404 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLLEAKNPLNAIV-------HMY-------NGGIFKEIFLDVQEI--SLDQLSQV 249 E K+L N + + Y G+F+ + L ++I ++ + + Sbjct: 201 TIEFVKMLLGVNRQGGLAPFIETECYQYCPKLREQGAGLFRLMDLPARQIETEVEAWTLL 260 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 I++ + E +I S L+ +W+ ++ + L R +R F N + + + Sbjct: 261 IQSLNLPEAEIRSFLK-----AWKLSNQLIQNVSQ--LVRGLR------FRLNNDWQPM- 306 Query: 310 IPEIKKLFYLYGDK--VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 + Y G++ V++ +L L+Y Q V + IH + L +TG Sbjct: 307 ------MLYELGEESAVLVERL-----LYYYQQESQVQVTKELVKALPIHQRHEL-AITG 354 Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 D++ PGK +G ++ +Q + S + QE L +K Sbjct: 355 KDLLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKK 398 >gi|189220183|ref|YP_001940823.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum infernorum V4] gi|189187041|gb|ACD84226.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum infernorum V4] Length = 443 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 121/231 (52%), Gaps = 5/231 (2%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I I+ +L K + GG VRD L+ DIDIAT+ PD+V +F + +I Sbjct: 3 EEAIRIVRILQKAGFTAFFAGGCVRDILLKKEPHDIDIATSATPDQVQNLFKEKASGLI- 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQ 131 S+G I++ +F++ T R+D+ + G R+ K V K D+LRRDFTIN ++ D Sbjct: 62 -GKSFGVIRVKSGAHFFEVATFRTDIGSQGGRWPKAVQFSTPKEDALRRDFTINGIFYDP 120 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +IDYVGG D+ + I+ IGD R ED+LR+LR RF G +I+ A Sbjct: 121 LTGTIIDYVGGSEDIEKKRIRAIGDPKIRFEEDHLRLLRAIRFAVRLG-FSIEEKTWEAI 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + +S ERI E++K+ +P + + G+ + I ++ + Sbjct: 180 QSSAHKITQISPERIREELDKIFTGPDPAKGLELLDQSGLLRFILPEISNL 230 >gi|300173420|ref|YP_003772586.1| CCA-adding enzyme [Leuconostoc gasicomitatum LMG 18811] gi|299887799|emb|CBL91767.1| CCA-adding enzyme [Leuconostoc gasicomitatum LMG 18811] Length = 403 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/202 (39%), Positives = 112/202 (55%), Gaps = 7/202 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D +L L ++ VGGAVRD L+N + D+DIAT+ P+ V +F+KT I T Sbjct: 12 DAQPVLKTLENAGFEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEVKSLFNKT----IDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ + ++ITT R++ TD R KV F R K D RRDFTINAL + Sbjct: 68 GIQHGTVMALDHGAGYEITTFRTESTYTDFRRPDKVTFVRSLKEDLKRRDFTINALAMNY 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G ++D GL+DL+N ++ +GDA R ED LR++R RF A E ID + A Sbjct: 128 SGNIVDLFDGLSDLKNGIVRAVGDAEVRFTEDALRMMRALRFSAQL-EFAIDFNTQQALR 186 Query: 192 KAKKGLKILSSERIWSEINKLL 213 K L+ ++ ERI E K+L Sbjct: 187 KLAPNLEKIAVERIRVEFEKIL 208 >gi|116494870|ref|YP_806604.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei ATCC 334] gi|191638377|ref|YP_001987543.1| CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus casei BL23] gi|122263712|sp|Q039G0|CCA_LACC3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|226702068|sp|B3WE84|CCA_LACCB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116105020|gb|ABJ70162.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei ATCC 334] gi|190712679|emb|CAQ66685.1| CCA-adding enzyme (EC 2.7.7.25) (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus casei BL23] gi|327382405|gb|AEA53881.1| Poly A polymerase [Lactobacillus casei LC2W] Length = 398 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 175/404 (43%), Gaps = 60/404 (14%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T T I Sbjct: 14 IPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRT----ADTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYA 129 +GT+ ++ +++TT R T+ RY V F R D RRDFTINAL Sbjct: 70 EHGTVMVLDHGTGYEVTTFR----TESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAV 125 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A Sbjct: 126 RHDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAA 184 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK-EIFLDVQEISLDQLSQ 248 K L +S ER+ +E N+LL + + +F + E +L Q SQ Sbjct: 185 IADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQ 244 Query: 249 VIE----------AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-----SLPREIRY 293 + + A +F + L ++L +W+ ++++ + +P + Sbjct: 245 LPDTQLTSLASGWAALIFLLRTQPL---VMLKAWKQSNELITLVTQTVKLLQVMPNPTAW 301 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 L + E++KL D+ +A+ L Sbjct: 302 DLYQAGEAAVTTAS----EVQKLLTPDFDQQQLAEAYAALP------------------- 338 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 IH KK L LTG D++K G+ PG +G L +Q + + Sbjct: 339 --IHSKKEL-ALTGADLIKAGVRPGPAMGKALNQIEQRVVAGAL 379 >gi|307274965|ref|ZP_07556128.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX2134] gi|306508413|gb|EFM77520.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX2134] Length = 406 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|226949676|ref|YP_002804767.1| polyA polymerase family protein [Clostridium botulinum A2 str. Kyoto] gi|226844372|gb|ACO87038.1| polyA polymerase family protein [Clostridium botulinum A2 str. Kyoto] Length = 450 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 3/207 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+++L + ++CIVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINILQENGYEACIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R K V FT + K D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +S + K Sbjct: 137 VDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFHMEESTKFNIR-ELSK 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 + +S ER E+ K+L + P+ I Sbjct: 196 NIANVSMERTRDELCKILVSSQPVYGI 222 >gi|227515169|ref|ZP_03945218.1| tRNA adenylyltransferase [Lactobacillus fermentum ATCC 14931] gi|260662126|ref|ZP_05863022.1| polynucleotide adenylyltransferase region [Lactobacillus fermentum 28-3-CHN] gi|227086501|gb|EEI21813.1| tRNA adenylyltransferase [Lactobacillus fermentum ATCC 14931] gi|260553509|gb|EEX26401.1| polynucleotide adenylyltransferase region [Lactobacillus fermentum 28-3-CHN] Length = 400 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 114/215 (53%), Gaps = 13/215 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS+T + T I + Sbjct: 16 ILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFSRT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG-----RYAKVVFTRDWKADSLRRDFTINALYADQQ 132 GT+ I+ ++ TT R++ G R V F R K D RRDFTINAL + Sbjct: 72 GTVMILDHGTGYETTTFRTE---SGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L + Sbjct: 129 GTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGMSQ 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 L+ ++ ERI E KLL K N + M + Sbjct: 188 NAALLEKIAVERIQVEFEKLLLGKAVQNGLATMLD 222 >gi|257086747|ref|ZP_05581108.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis D6] gi|256994777|gb|EEU82079.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis D6] gi|315027269|gb|EFT39201.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX2137] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRSLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|168180739|ref|ZP_02615403.1| polyA polymerase family protein [Clostridium botulinum NCTC 2916] gi|182668524|gb|EDT80503.1| polyA polymerase family protein [Clostridium botulinum NCTC 2916] Length = 450 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 3/207 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+++L + ++CIVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINILQENGYEACIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R K V FT + K D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +S + K Sbjct: 137 VDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFHMEESTKFNIR-ELSK 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 + +S ER E+ K+L + P+ I Sbjct: 196 NIANVSMERTRDELCKILVSSQPVYGI 222 >gi|324992991|gb|EGC24911.1| polyA polymerase family protein [Streptococcus sanguinis SK405] Length = 399 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 182/373 (48%), Gaps = 41/373 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+ + D+DIA++ P+ IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLKRPIHDVDIASSSYPEETKHIFDRT----VDVGIEHGTVLVLENNR 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R +KV F R + D RRDFTINAL D+ G+VID GL+DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDENGQVIDLFQGLDDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A + +++ D VA L+ +S ERI Sbjct: 142 ENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMKDCAPLLEKISVERI 200 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 + E +KLL A + + G + FL + S +L ++ + F + Sbjct: 201 FIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFDLASDFRFSASEQAW 258 Query: 266 FIVLISW--QDKKSIL-------SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 +L+ QD K IL AKK EI F +++ LS K+ Sbjct: 259 AALLLDLDVQDVKGILKDWKTSREFAKKVEDLVEIAAFR--------SERDLS----KRD 306 Query: 317 FYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 Y Y +++ ++ LA+ ++ + + D IH K+ + G + + Sbjct: 307 CYDYDIDLLLQAEELRQAQGLAVDFSAIQNLDASL-------TIHSKQEMVVNGGMLMRE 359 Query: 373 YGIPPGKKVGNIL 385 +G PG K+G IL Sbjct: 360 FGFEPGPKLGQIL 372 >gi|293382998|ref|ZP_06628916.1| poly A polymerase [Enterococcus faecalis R712] gi|293389513|ref|ZP_06633970.1| poly A polymerase [Enterococcus faecalis S613] gi|312907531|ref|ZP_07766522.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis DAPTO 512] gi|312910149|ref|ZP_07768996.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis DAPTO 516] gi|291079663|gb|EFE17027.1| poly A polymerase [Enterococcus faecalis R712] gi|291081130|gb|EFE18093.1| poly A polymerase [Enterococcus faecalis S613] gi|310626559|gb|EFQ09842.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis DAPTO 512] gi|311289422|gb|EFQ67978.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis DAPTO 516] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|256961930|ref|ZP_05566101.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis Merz96] gi|256952426|gb|EEU69058.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis Merz96] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|255972800|ref|ZP_05423386.1| poly A polymerase [Enterococcus faecalis T1] gi|256762486|ref|ZP_05503066.1| poly A polymerase [Enterococcus faecalis T3] gi|255963818|gb|EET96294.1| poly A polymerase [Enterococcus faecalis T1] gi|256683737|gb|EEU23432.1| poly A polymerase [Enterococcus faecalis T3] Length = 404 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 24 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 79 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 80 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 139 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 140 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 198 Query: 206 WSEINKLL 213 E K+L Sbjct: 199 TIEFVKML 206 >gi|119953484|ref|YP_945693.1| poly(A) polymerase [Borrelia turicatae 91E135] gi|119862255|gb|AAX18023.1| poly(A) polymerase [Borrelia turicatae 91E135] Length = 407 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 8/228 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + D+I I + NK + +VGGA+RD L+ D D T P+ +M++F Sbjct: 6 NTKDIIKISKIFNKHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPEEIMQLFPNN---- 61 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALY 128 + T I +GTI II KK F++TT R D+ + + A + FT++ D RRDFTIN++ Sbjct: 62 VKTGIKHGTISIIFNKKIFEVTTYRIDIDYENKRAPKNIKFTKNLNEDLQRRDFTINSIA 121 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + ++ID G DL + I+ IGD + R ED LRILR R FA + ID + L Sbjct: 122 MNILNYEIIDCYKGKQDLNKKIIRCIGDPNKRFEEDALRILRAAR-FASTLDFTIDKNTL 180 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ K + LS ERI +E KLLE KNP+ I ++ FK F Sbjct: 181 ISMKYKKTNILFLSKERINNEFIKLLEGKNPIKGINYLQKINFFKYFF 228 >gi|29376121|ref|NP_815275.1| poly A polymerase [Enterococcus faecalis V583] gi|227518748|ref|ZP_03948797.1| tRNA adenylyltransferase [Enterococcus faecalis TX0104] gi|256958977|ref|ZP_05563148.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis DS5] gi|256965128|ref|ZP_05569299.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis HIP11704] gi|257079008|ref|ZP_05573369.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis JH1] gi|257082553|ref|ZP_05576914.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis E1Sol] gi|257085186|ref|ZP_05579547.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis Fly1] gi|257419293|ref|ZP_05596287.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis T11] gi|257422622|ref|ZP_05599612.1| poly(A) polymerase [Enterococcus faecalis X98] gi|294781648|ref|ZP_06746983.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis PC1.1] gi|307271021|ref|ZP_07552304.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX4248] gi|307273228|ref|ZP_07554474.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0855] gi|312900757|ref|ZP_07760054.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0470] gi|312951490|ref|ZP_07770386.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0102] gi|73619770|sp|Q834S5|CCA_ENTFA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|29343583|gb|AAO81345.1| poly A polymerase [Enterococcus faecalis V583] gi|227073801|gb|EEI11764.1| tRNA adenylyltransferase [Enterococcus faecalis TX0104] gi|256949473|gb|EEU66105.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis DS5] gi|256955624|gb|EEU72256.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis HIP11704] gi|256987038|gb|EEU74340.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis JH1] gi|256990583|gb|EEU77885.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis E1Sol] gi|256993216|gb|EEU80518.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis Fly1] gi|257161121|gb|EEU91081.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis T11] gi|257164446|gb|EEU94406.1| poly(A) polymerase [Enterococcus faecalis X98] gi|294451200|gb|EFG19667.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis PC1.1] gi|295112981|emb|CBL31618.1| tRNA nucleotidyltransferase/poly(A) polymerase [Enterococcus sp. 7L76] gi|306510213|gb|EFM79237.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0855] gi|306512519|gb|EFM81168.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX4248] gi|310630456|gb|EFQ13739.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0102] gi|311292238|gb|EFQ70794.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0470] gi|315033966|gb|EFT45898.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0017] gi|315036975|gb|EFT48907.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0027] gi|315147261|gb|EFT91277.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX4244] gi|315150540|gb|EFT94556.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0012] gi|315152487|gb|EFT96503.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0031] gi|315155765|gb|EFT99781.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0043] gi|315158068|gb|EFU02085.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0312] gi|315169038|gb|EFU13055.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1341] gi|315575870|gb|EFU88061.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0309B] gi|315580522|gb|EFU92713.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0309A] gi|323480720|gb|ADX80159.1| tRNA adenylyltransferase [Enterococcus faecalis 62] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|227535133|ref|ZP_03965182.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187178|gb|EEI67245.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 407 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 175/404 (43%), Gaps = 60/404 (14%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T T I Sbjct: 23 IPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRT----ADTGI 78 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYA 129 +GT+ ++ +++TT R T+ RY V F R D RRDFTINAL Sbjct: 79 EHGTVMVLDHGTGYEVTTFR----TESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAV 134 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A Sbjct: 135 RHDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK-EIFLDVQEISLDQLSQ 248 K L +S ER+ +E N+LL + + +F + E +L Q SQ Sbjct: 194 IADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQ 253 Query: 249 VIE----------AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-----SLPREIRY 293 + + A +F + L ++L +W+ ++++ + +P + Sbjct: 254 LPDTQLTSLASGWAALIFLLRTQPL---VMLKAWKQSNELITLVTQTVKLLQVMPNPTAW 310 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 L + E++KL D+ +A+ L Sbjct: 311 DLYQAGEAAVTTAS----EVQKLLTPDFDQQQLAEAYAALP------------------- 347 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 IH KK L LTG D++K G+ PG +G L +Q + + Sbjct: 348 --IHSKKEL-ALTGADLIKAGVRPGPAMGKALNQIEQRVVAGAL 388 >gi|256619060|ref|ZP_05475906.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 4200] gi|257089882|ref|ZP_05584243.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis CH188] gi|312903304|ref|ZP_07762484.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0635] gi|256598587|gb|EEU17763.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 4200] gi|256998694|gb|EEU85214.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis CH188] gi|310633180|gb|EFQ16463.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0635] gi|315577710|gb|EFU89901.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0630] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|307278077|ref|ZP_07559161.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0860] gi|306505474|gb|EFM74660.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0860] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|315172315|gb|EFU16332.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1346] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|257416090|ref|ZP_05593084.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis AR01/DG] gi|257157918|gb|EEU87878.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis ARO1/DG] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|256853122|ref|ZP_05558492.1| poly A polymerase [Enterococcus faecalis T8] gi|307291999|ref|ZP_07571868.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0411] gi|256711581|gb|EEU26619.1| poly A polymerase [Enterococcus faecalis T8] gi|306496997|gb|EFM66545.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0411] gi|315029388|gb|EFT41320.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX4000] Length = 406 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|228476094|ref|ZP_04060802.1| cca-adding enzyme [Staphylococcus hominis SK119] gi|314936408|ref|ZP_07843755.1| polyA polymerase [Staphylococcus hominis subsp. hominis C80] gi|228269917|gb|EEK11397.1| cca-adding enzyme [Staphylococcus hominis SK119] gi|313655027|gb|EFS18772.1| polyA polymerase [Staphylococcus hominis subsp. hominis C80] Length = 400 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ + K ++ VGGAVRD +M+ ++ DIDI T+ +PD + IF T IP + Sbjct: 12 ILNQIEKHHFEAYFVGGAVRDYIMHRTIHDIDITTSAMPDEIEDIFEHT----IPIGKEH 67 Query: 78 GTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI ++ + +++TT RS D + R ++V F R+ D RRDFTINA+ D+ K+ Sbjct: 68 GTINVVFNNENYEVTTFRSEGDYLDHRRPSEVNFVRNLYEDVQRRDFTINAIAMDKNYKI 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 DY GG D++++ I+ +G+ R ED LRI+R RF + +I ++ A Sbjct: 128 FDYFGGQKDIQSKLIRTVGNPSERFKEDALRIIRGLRFQSQLT-FDIHTETFEAMQLTCS 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQ 254 +K LS ERI E KL+ N + ++ + IF I F + +++ +++ +E EQ Sbjct: 187 DVKYLSIERIVVEFKKLILGSNVKQSYHNLLSLKIFNYIPFFNELDMTCVYINEPLEFEQ 246 >gi|299783194|gb|ADJ41192.1| Polynucleotide adenylyltransferase region [Lactobacillus fermentum CECT 5716] Length = 400 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 114/215 (53%), Gaps = 13/215 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS+T + T I + Sbjct: 16 ILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFSRT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG-----RYAKVVFTRDWKADSLRRDFTINALYADQQ 132 GT+ I+ ++ TT R++ G R V F R K D RRDFTINAL + Sbjct: 72 GTVMILDHGTGYETTTFRTE---SGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L + Sbjct: 129 GTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGMSQ 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 L+ ++ ERI E KLL K N + M + Sbjct: 188 NAALLEKIAVERIQVEFEKLLLGKAVQNGLATMLD 222 >gi|255975856|ref|ZP_05426442.1| poly A polymerase [Enterococcus faecalis T2] gi|255968728|gb|EET99350.1| poly A polymerase [Enterococcus faecalis T2] Length = 404 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 24 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 79 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 80 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 139 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 140 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 198 Query: 206 WSEINKLL 213 E K+L Sbjct: 199 TIEFVKML 206 >gi|300814961|ref|ZP_07095189.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300510931|gb|EFK38203.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 445 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 129/237 (54%), Gaps = 6/237 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D+ ++L L+ KS IVGG +RD L+ + D DI T P +V +F + YK+ Sbjct: 2 DKDVFDLLEKLDNHGYKSYIVGGCLRDILLGIRPNDFDITTNARPSQVKEVFRE--YKIF 59 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I YGTI + R + ++ITT RS+ +D R +V+F D RRDFTI+A+ Sbjct: 60 DYGIKYGTITVEYRDRLYEITTFRSEGTYSDNRRPDRVLFLDSIDDDLARRDFTISAMAM 119 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D+ + D G+ DL+N+ I+ GDA+ RI ED LRILR RF + + +D + A Sbjct: 120 DKSYNIYDPFNGIRDLKNKIIRACGDANKRIEEDALRILRAIRFATRF-KFYLDEELFDA 178 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQ 245 + LK ++ ERI+SEI K++ NP + M GI +F +++ + DQ Sbjct: 179 ISLNRNLLKNIARERIFSEICKIITYDNPSYGFLLMEETGILDILFPSLRKTVGFDQ 235 >gi|226227317|ref|YP_002761423.1| tRNA nucleotidyltransferase [Gemmatimonas aurantiaca T-27] gi|226090508|dbj|BAH38953.1| tRNA nucleotidyltransferase [Gemmatimonas aurantiaca T-27] Length = 446 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 114/420 (27%), Positives = 194/420 (46%), Gaps = 37/420 (8%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 +L + G C VGGAVRD+L+ ++ D D+AT P +V R+F +T IP I +GT Sbjct: 21 TLQDAGFPTWC-VGGAVRDALLGRALLDFDLATAATPAQVRRLFRRT----IPVGIEFGT 75 Query: 80 IKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-D 137 + ++ R + ++TT R D+ TDGR+A V F D RRDFTINA+ D + + D Sbjct: 76 VGVLDRDGRMHEVTTFRHDVKTDGRHAVVEFGASLDEDLARRDFTINAIAFDPIARRLHD 135 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 G DL ++ +G A R+ ED LR LR RF + +G + I+ + VA + L Sbjct: 136 PFRGREDLLAGVVRAVGVAEERMREDRLRALRAIRFASRFGFE-IERETWVAIEASAAHL 194 Query: 198 KILSSERIWSEINKLLEAKN-PLNAIVHMYNGGIFKEIFLDVQEI------SLDQLSQVI 250 LS ER+ EI+K LE + P A + G F + + ++ ++D+L + + Sbjct: 195 TRLSPERVKQEIDKTLEQVDAPSVAFARWRDAGAFAAVVPALAQVPDGTLAAIDRLPRAV 254 Query: 251 EAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREI----------RYFLISFF 299 + + LR L S + K++ ++ + +EI + F + Sbjct: 255 TPTR----PLRRTLRLATLFSSLEGKEATRALRALRASNQEISVVGALVDGWQRFGTALE 310 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-- 357 S P ++++ G ++ + L A H+ T + Q+ + H Sbjct: 311 AHLVAGSLPSDPALRRIAADVG-RLRVNALLRLGAAHWAGDTRIAPRLVRQLFRRLTHIA 369 Query: 358 WKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + P+ + GDD+ ++G+ G +G +L H + I + +E L L + IA Sbjct: 370 FHDPIEIADLAIDGDDLRQHGLRAGPALGRVLQHLRHLVIEDPSRNQREILLALAGEWIA 429 >gi|329115963|ref|ZP_08244680.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus parauberis NCFD 2020] gi|326906368|gb|EGE53282.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus parauberis NCFD 2020] Length = 403 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 116/420 (27%), Positives = 196/420 (46%), Gaps = 51/420 (12%) Query: 13 SDLINILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 S+ L +L K +D ++ VGG VRD L++ + D+DIAT+ P IF +T Sbjct: 8 SEFQKALPILKKIKDAGFQAYFVGGGVRDILLDRPIHDVDIATSSYPQETKNIFERT--- 64 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 + I +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL Sbjct: 65 -VDIGIEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D+ G++ID GL D++N+ ++ +G A R ED LRI+R FRF A + +I+ + Sbjct: 124 ALDETGQIIDAFTGLEDIKNKELRAVGKAEERFEEDALRIMRGFRFSATL-DFSIEKETF 182 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKN-------PLNAIVHMYNGGI------FKEI 234 VA L+ +S ER + E +KLL A +NA H+Y G+ + + Sbjct: 183 VAMCSHAPLLEKISVERSFIEFDKLLIADKWKRGLRLLINAKAHLYLPGLANKESELRNV 242 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 L+V + + S A + +++S F L SW+ + K +IR Sbjct: 243 LLEVADDFIYSNSPQAWANLILTLQVESPKEF--LKSWKTSNDFQKIVTKMINLYQIR-- 298 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKV--MIAKLKIF--LALHYNNLTHQDTCFILQ 350 + ++N+ T+ Y YG + + L+ L YN + D Sbjct: 299 ----LSSSYNKSTI---------YKYGKDLAYLCENLREAKGLEAEYNLIDEFDKEL--- 342 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 IIH K + G + ++G+ PG ++G++L + + S + D+ + K Sbjct: 343 ----IIHDKHEICVNGGTLIKEFGMKPGPQLGSLLKKIEIAIVEGSLANQKADILAFVAK 398 >gi|162449360|ref|YP_001611727.1| hypothetical protein sce1090 [Sorangium cellulosum 'So ce 56'] gi|161159942|emb|CAN91247.1| cca [Sorangium cellulosum 'So ce 56'] Length = 460 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 8/210 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D++ I L + + IVGG VRD L +D D+AT P+ V+ F K VIP Sbjct: 13 EDVLGICRRLRERGKRGWIVGGCVRDLLRGQDAKDWDVATDARPEEVVAAFRK----VIP 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ R +++TTLR D +DGR +V F D AD RRDFT+NA+ D Sbjct: 69 TGIQHGTVTVLVRGVPYEVTTLRGDGTYSDGRRPDRVEFVDDITADLARRDFTMNAIAID 128 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLV 188 G +ID GG +DL + I+ +GD R ED LR+LR RF A G + +++ + Sbjct: 129 PVDGHLIDPFGGRSDLEAKIIRAVGDPGERFAEDGLRVLRAARFAATLEGTLDPETERAM 188 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + ++ + + +S+ER+ E K + A+ P Sbjct: 189 GTARSHQTFRCVSAERVRDEWLKAMRARRP 218 >gi|300214483|gb|ADJ78899.1| CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus salivarius CECT 5713] Length = 404 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 114/203 (56%), Gaps = 7/203 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD+L+ L + D+DIA++ P+ + +IFSKT + T + +GT+ ++ ++I Sbjct: 30 VGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFSKT----VDTGVEHGTVMVLDHGTGYEI 85 Query: 92 TTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ R KV F R + D RRD TINAL D +GK+ID GL DL+N Sbjct: 86 TTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMDDKGKIIDLFDGLKDLKNGI 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G+ R ED LR++R RF + K ++ D A K L+ ++ ERI E Sbjct: 146 IRAVGNPEERFHEDALRMMRAVRFGSQLDFK-VELDTFNAIKKNSHLLEKIAIERIHVEW 204 Query: 210 NKLLEAKNPLNAIVHMYNGGIFK 232 KLL KNP + + ++K Sbjct: 205 VKLLLGKNPKQGLQEFLDTELYK 227 >gi|227890771|ref|ZP_04008576.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius ATCC 11741] gi|227867180|gb|EEJ74601.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius ATCC 11741] Length = 404 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 114/203 (56%), Gaps = 7/203 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD+L+ L + D+DIA++ P+ + +IFSKT + T + +GT+ ++ ++I Sbjct: 30 VGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFSKT----VDTGVEHGTVMVLDHGTGYEI 85 Query: 92 TTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ R KV F R + D RRD TINAL D +GK+ID GL DL+N Sbjct: 86 TTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMDDKGKIIDLFDGLKDLKNGI 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G+ R ED LR++R RF + K ++ D A K L+ ++ ERI E Sbjct: 146 IRAVGNPEERFHEDALRMMRAVRFGSQLDFK-VELDTFNAIKKNSHLLEKIAIERIHVEW 204 Query: 210 NKLLEAKNPLNAIVHMYNGGIFK 232 KLL KNP + + ++K Sbjct: 205 VKLLLGKNPKQGLQEFLDTELYK 227 >gi|223938798|ref|ZP_03630686.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [bacterium Ellin514] gi|223892496|gb|EEF58969.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [bacterium Ellin514] Length = 440 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 109/430 (25%), Positives = 190/430 (44%), Gaps = 67/430 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD + +D D+AT +P++V RIF +T IP +G + ++ + F I Sbjct: 24 VGGCVRDYFLGREPKDFDVATNAVPEQVERIFQRT----IPVGRKFGVLIVLEKGFEFQI 79 Query: 92 TTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRT 149 T R++ DGR+ + V D KAD+ RRDFTIN L+ D V+ D+VGG DL+ + Sbjct: 80 ATFRAESDYQDGRHPEQVTFGDPKADASRRDFTINGLFYDPVNDVLHDWVGGEVDLKAKV 139 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ IG+ R ED+LR+LR RF A + I++ A + +K +S+ERI E+ Sbjct: 140 LRTIGEPAERFAEDHLRLLRAVRFAAQLNFQ-IEAKTFAAMVANAPKIKTISAERIREEL 198 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL----LR 265 K+ + + + G+ +++ L +++ I EQ ++ + +R Sbjct: 199 MKVFRPPHAARGLDLLRESGLLEQV--------LPEIAATITCEQTPDYHPEGSVYNHVR 250 Query: 266 FIVLISWQDKKSILS-------MAKKFSLPREIRYFLISFFN---------------CNF 303 ++ +D L +AK + R+ I F+ F Sbjct: 251 LMLSQLPEDASPELPWAVLLHDVAKPVTASRDPETGSIHFYGHEKVGAEMAEVLLQRLKF 310 Query: 304 NQKTL--------------SIPEIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTH 342 +K +P ++K +M + LALH + L H Sbjct: 311 PRKETDEIVAAVLYHMQFKDVPNMRK--STLRRMIMRETFPLELALHRLDCLGSHRMLDH 368 Query: 343 QDTCFILQVLSDIIHWKKPLFP-LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 D F+++ ++ + L P L G+D++ G+ PG +G +L + + + + S Sbjct: 369 YD--FMVEQERELEKKPEILPPLLNGNDLMALGMQPGPAMGELLTELRDKQLQEELKTSD 426 Query: 402 EDLHHLLRKL 411 E +L KL Sbjct: 427 EAREWVLEKL 436 >gi|301066431|ref|YP_003788454.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei str. Zhang] gi|300438838|gb|ADK18604.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei str. Zhang] Length = 398 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 175/404 (43%), Gaps = 60/404 (14%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T T I Sbjct: 14 IPILKKIEVAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRT----ADTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYA 129 +GT+ ++ +++TT R T+ RY V F R D RRDFTINAL Sbjct: 70 EHGTVMVLDHGTGYEVTTFR----TESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAV 125 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A Sbjct: 126 RHDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAA 184 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK-EIFLDVQEISLDQLSQ 248 K L +S ER+ +E N+LL + + +F + E +L Q SQ Sbjct: 185 IADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQ 244 Query: 249 VIE----------AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-----SLPREIRY 293 + + A +F + L ++L +W+ ++++ + +P + Sbjct: 245 LPDTQLTSLASGWAALIFLLRTQPL---VMLKAWKQSNELITLVTQTVKLLQVMPNPTAW 301 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 L + E++KL D+ +A+ L Sbjct: 302 DLYQAGEAAVTTAS----EVQKLLTPDFDQQQLAEAYAALP------------------- 338 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 IH KK L LTG D++K G+ PG +G L +Q + + Sbjct: 339 --IHSKKEL-ALTGADLIKAGVRPGPAMGKALNQIEQRVVAGAL 379 >gi|90961683|ref|YP_535599.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius UCC118] gi|122449084|sp|Q1WU19|CCA_LACS1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|90820877|gb|ABD99516.1| Poly(A) polymerase / tRNA nucleotidyltransferase [Lactobacillus salivarius UCC118] Length = 404 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 114/203 (56%), Gaps = 7/203 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD+L+ L + D+DIA++ P+ + +IFSKT + T + +GT+ ++ ++I Sbjct: 30 VGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFSKT----VDTGVEHGTVMVLDHGTGYEI 85 Query: 92 TTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ R KV F R + D RRD TINAL D +GK+ID GL DL+N Sbjct: 86 TTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMDDKGKIIDLFDGLKDLKNGI 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G+ R ED LR++R RF + K ++ D A K L+ ++ ERI E Sbjct: 146 IRAVGNPEERFHEDALRMMRAVRFGSQLDFK-VELDTFNAIKKNSHLLEKIAIERIHVEW 204 Query: 210 NKLLEAKNPLNAIVHMYNGGIFK 232 KLL KNP + + ++K Sbjct: 205 VKLLLGKNPKQGLQEFLDTELYK 227 >gi|302672263|ref|YP_003832223.1| tRNA nucleotidyltransferase Cca [Butyrivibrio proteoclasticus B316] gi|302396736|gb|ADL35641.1| tRNA nucleotidyltransferase Cca [Butyrivibrio proteoclasticus B316] Length = 447 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 114/422 (27%), Positives = 185/422 (43%), Gaps = 70/422 (16%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL +++ ++ +VGG VRD+++ D DI T LP + ++F +T I T I Sbjct: 11 TILDTIHEAGFEAYVVGGCVRDAVLGRVPGDWDITTNALPQDIKKLFRRT----IDTGIE 66 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINALYAD 130 +GT+ ++ K+ +++TT R DG+Y ++V FT++ D RRDFTINA+ + Sbjct: 67 HGTVTVMMGKEGYEVTTYR----IDGKYEDNRHPSEVTFTKNLTEDMKRRDFTINAMAYN 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ +ID GGL D+ I+ +GD + R ED LRI+R RF A G D + Sbjct: 123 EEEGLIDRFGGLEDIEKGLIRCVGDPYERFSEDALRIMRAIRFSAQLG--YTIEDKTCEA 180 Query: 191 IKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 IK G L+ +S+ERI E+ KLL + +P + I Y GI + I + + + + Sbjct: 181 IKELSGTLEKISAERIQVELVKLLLSDHP-DKIRQAYELGITRVILPEFDACMETEQNNI 239 Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSMA------------KKFSLPR 289 A V E + D +LR +L+ K +++ K + R Sbjct: 240 HHAYSVGEHIIQTLLNIRADRVLRLTMLMHDMAKPVTMTVDEEGVSHFKGHDIKGVEMAR 299 Query: 290 EIRYFLISFFNCNFNQKTLS------------IPEIKKLFYLYGDKVMIAKLKIFLALHY 337 I F F++ T+ P + +KV +FL + Y Sbjct: 300 NI------FRRLKFDRDTMDKACNLIRYHDYRFPATARNVRRAMNKVGADAFPLFLEVRY 353 Query: 338 NNLTHQDTCFILQVLSDI---------IHWKKPLFPL-----TGDDVVKYGIPPGKKVGN 383 + Q + L I I K L G D++ G+ PGKK+G Sbjct: 354 ADTMAQSEYKREEKLRQIEETRLLYEEIKAKNECVTLGSLAVNGRDLISLGVAPGKKIGE 413 Query: 384 IL 385 +L Sbjct: 414 VL 415 >gi|229550019|ref|ZP_04438744.1| tRNA adenylyltransferase [Enterococcus faecalis ATCC 29200] gi|229304932|gb|EEN70928.1| tRNA adenylyltransferase [Enterococcus faecalis ATCC 29200] gi|327535129|gb|AEA93963.1| tRNA adenylyltransferase [Enterococcus faecalis OG1RF] Length = 424 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 44 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 99 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 100 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 159 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 160 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 218 Query: 206 WSEINKLL 213 E K+L Sbjct: 219 TIEFVKML 226 >gi|160944761|ref|ZP_02091988.1| hypothetical protein FAEPRAM212_02276 [Faecalibacterium prausnitzii M21/2] gi|158443945|gb|EDP20949.1| hypothetical protein FAEPRAM212_02276 [Faecalibacterium prausnitzii M21/2] Length = 444 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 105/185 (56%), Gaps = 5/185 (2%) Query: 36 VRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR 95 VRDSL+ + D D+ T+ LP +VM +F + IPT + +GT+ I + ++ TT R Sbjct: 30 VRDSLLGRTAHDWDLCTSALPQQVMELFGTE--QCIPTGLQHGTVTIKYGGQLYETTTFR 87 Query: 96 SD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFI 153 ++ TDGR+ V F D + D RRDFTINA+ + ++D GG DL+N ++ + Sbjct: 88 TEGSYTDGRHPDAVQFVPDVREDLARRDFTINAMAYNAAEGLVDPFGGQKDLQNGLLRAV 147 Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 G+ R ED LRILR +RF A +G +D+ A+ + L +S+ERI E+ KLL Sbjct: 148 GEPQQRFTEDALRILRLYRFAARFG-FTLDAATARAARQLAPHLDCISAERIQEELAKLL 206 Query: 214 EAKNP 218 A P Sbjct: 207 VAPQP 211 >gi|225026631|ref|ZP_03715823.1| hypothetical protein EUBHAL_00882 [Eubacterium hallii DSM 3353] gi|224956001|gb|EEG37210.1| hypothetical protein EUBHAL_00882 [Eubacterium hallii DSM 3353] Length = 450 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 124/212 (58%), Gaps = 14/212 (6%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H SD+I LS ++ +VGG VRDS++ D DI T+ LP++V +F +T Sbjct: 8 HASDIIKTLSAHGY---EAYVVGGCVRDSILGKEPADWDITTSALPEQVKALFPRT---- 60 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 I T + +GT+ I+ K +++TT R D + R +V FT D K D +RRDFTINA+ Sbjct: 61 IDTGLKHGTVTIMMDKVGYEVTTYRIDGTYEDHRRPNEVTFTSDLKEDLMRRDFTINAMA 120 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGL 187 +++ ++D GG+ DL +R I+ +G+ R ED LR+LR RF G+ N + Sbjct: 121 YNEEQGLVDLFGGIQDLTDRIIRCVGNPAERFDEDALRMLRAVRF---AGQLNFKIEENT 177 Query: 188 VASIKAKKG-LKILSSERIWSEINKLLEAKNP 218 A+I+A+ LK +S+ERI +E+ KLL + +P Sbjct: 178 KAAIEAQHTFLKDVSAERIQTELMKLLVSGHP 209 >gi|229545827|ref|ZP_04434552.1| tRNA adenylyltransferase [Enterococcus faecalis TX1322] gi|229309055|gb|EEN75042.1| tRNA adenylyltransferase [Enterococcus faecalis TX1322] Length = 424 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 44 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 99 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 100 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 159 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 160 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 218 Query: 206 WSEINKLL 213 E K+L Sbjct: 219 TIEFVKML 226 >gi|187918562|ref|YP_001884125.1| poly(A) polymerase [Borrelia hermsii DAH] gi|119861410|gb|AAX17205.1| poly(A) polymerase [Borrelia hermsii DAH] Length = 405 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + D++ I + N + +VGGA+RD L+ D D T P +MR+F Sbjct: 6 NTKDIMKISKIFNNNNYEFFLVGGALRDLLLKKIPDDFDFTTNATPKEIMRLFPNN---- 61 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALY 128 I T + +GTI II KK F++TT R D+ + + + +V FT+ D RRDFTIN++ Sbjct: 62 IQTGMKHGTISIIFNKKIFEVTTYRIDIDYENKRSPKEVKFTKSLNEDLQRRDFTINSIA 121 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + ++IDY G DL + IK IG+ + R ED LRILR R FA + ID + L Sbjct: 122 MNILNCEIIDYYNGKQDLNKKIIKCIGEPNKRFEEDALRILRAAR-FASTLDFTIDQNTL 180 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ K + +LS ERI +E KLLE KNP I ++ F+ F Sbjct: 181 ISMKYKKANILLLSKERINNEFIKLLEGKNPRKGIHYLQKINFFRYFF 228 >gi|306820496|ref|ZP_07454129.1| tRNA adenylyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551410|gb|EFM39368.1| tRNA adenylyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 443 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++S+L + IVGG +RD L+ DIDI T LP ++ +F + YKV+ T Y Sbjct: 12 VISMLESKGYNAYIVGGCLRDILLGRKSHDIDITTDALPKEIIDVFYDS-YKVVETGAKY 70 Query: 78 GTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI +I +ITT RS D I R + F +D KAD RRDFT+NA+ + + Sbjct: 71 GTITVIIDGSPVEITTFRSEQDYIDGRRPENISFEKDIKADLSRRDFTLNAMAYNDKDGF 130 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G DL ++ I+ +G+ R ED LR+LR RF A + K I+ + A + + Sbjct: 131 IDLFDGKEDLEDKIIRCVGNPRERFKEDKLRMLRAVRFAATFDFK-IEDETFEAIKEFSQ 189 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + +S ERI +E++K+L + P AI+ + G+ K I + E+ Sbjct: 190 DINEISIERINAELSKMLLVQRPSQAIILLKKTGLLKNILPVIDEM 235 >gi|149183107|ref|ZP_01861558.1| tRNA nucleotidyltransferase [Bacillus sp. SG-1] gi|148849184|gb|EDL63383.1| tRNA nucleotidyltransferase [Bacillus sp. SG-1] Length = 395 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 112/203 (55%), Gaps = 7/203 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGGAVRD L+N DIDIAT+ LP V +F KT I I Sbjct: 12 LPVLEKLEEAGYQAYFVGGAVRDLLLNRPTNDIDIATSALPQEVKGVFPKT----IDVGI 67 Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ +I + ++ITT RS+ R V F + K D RRDFTINA+ D+ G Sbjct: 68 EHGTVVVIYNETPYEITTFRSEEEYKDHRRPESVTFIKSLKEDLQRRDFTINAIAMDRSG 127 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D GG D++ +TI+ +G A R ED LR++R RF A G K +++D + + Sbjct: 128 TIHDPFGGEVDIKAKTIRTVGSADERFKEDALRMMRAVRFMAQLGFK-MENDTFESIKRN 186 Query: 194 KKGLKILSSERIWSEINKLLEAK 216 LK ++ ER+ +E KLL + Sbjct: 187 GNTLKYIAVERLSAEFEKLLGGR 209 >gi|291059673|gb|ADD72408.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum str. Chicago] Length = 494 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 115/215 (53%), Gaps = 10/215 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N S D D+AT P+RV +F +T +PT I +GT+ I+ R + Sbjct: 42 VVGGAVRDFLLNRSAHDWDLATDAPPERVRMLFRRT----VPTGIEHGTVTILFRGHSIE 97 Query: 91 ITTLR--SDLITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 TT R SD +D R+ V F + D RRDFT+NA A G++ID GG DLR Sbjct: 98 CTTFRVESDY-SDRRHPDSVCFAARIEDDLARRDFTVNAFAAALPSGEIIDVCGGYADLR 156 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 N I +GDAH R ED LR LR RF A +I++ A I + +S ER+ Sbjct: 157 NGLICSVGDAHARFSEDALRPLRAVRFAAQLS-FSIEARTREAIIALRAHTARISRERVR 215 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E++K+L P A+ M G+ +F + ++ Sbjct: 216 DELSKMLCTPRPSIALRLMEETGLLHTLFPALAQV 250 >gi|291542754|emb|CBL15864.1| tRNA nucleotidyltransferase/poly(A) polymerase [Ruminococcus bromii L2-63] Length = 448 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 6/204 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I L N+G + + IVGG VRD L+ L+ D DI T LP++ + F Y+ T I + Sbjct: 11 IRQLNNQGYE-AFIVGGCVRDYLLGLTPHDTDICTNALPEQTKKCFEA--YRTFDTGIKH 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI ++C + ++ITT R D +D R+ V FTR+ D RRDFT+NA+ + + + Sbjct: 68 GTISVVCGGEVYEITTYRIDGDYSDNRHPDSVSFTRNINEDLQRRDFTVNAMAYNAEYGL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG NDL+++ I+ +G+ R ED LRILR RF + YG +I+ + + K Sbjct: 128 VDPYGGKNDLKDKIIRCVGNPDTRFNEDALRILRALRFASVYG-FSIEENTSKSIFKNAD 186 Query: 196 GLKILSSERIWSEINKLLEAKNPL 219 LK +++ER+ SE KL+ K+ + Sbjct: 187 LLKNIATERVISEFLKLICGKDAV 210 >gi|126654221|ref|ZP_01726017.1| tRNA nucleotidyltransferase [Bacillus sp. B14905] gi|126589303|gb|EAZ83459.1| tRNA nucleotidyltransferase [Bacillus sp. B14905] Length = 392 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 15/220 (6%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L + ++ IVGGAVRD+L+N D+D+AT LP+ V +F +T + I Sbjct: 12 SVIEQLEQAGFEAVIVGGAVRDALLNRPAHDVDVATNALPEEVKTVFQRT----VDIGIQ 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYAD 130 +GT+ +I ++TT R TDG Y KV F R + D RRDFT+NA+ Sbjct: 68 HGTVLVIVPAGPVEVTTYR----TDGEYTDHRRPDKVQFVRSLQDDLQRRDFTMNAIAMR 123 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G +DY GG D+ R I+ +GDA R ED LR+LR RF A + I D L+A Sbjct: 124 RDGSFVDYYGGRQDIDLRIIRAVGDAQKRFAEDALRMLRAIRFSAQL-DFTIAEDTLMAI 182 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + ++ ERI +E++KL + + + G+ Sbjct: 183 QHRAADIAFIAKERIKAELDKLWLGTTVFSGLQKLEESGL 222 >gi|12724561|gb|AAK05657.1|AE006386_8 poly(A) polymerase [Lactococcus lactis subsp. lactis Il1403] Length = 411 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 108/391 (27%), Positives = 192/391 (49%), Gaps = 24/391 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK- 86 ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I I +GT+ ++ K Sbjct: 39 EAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFPYT----IDVGIEHGTVLVLAGKS 94 Query: 87 --KYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++++ITT R++ TD R V F RD + D RRDFTINA D G++ID GL Sbjct: 95 EAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTINAFACDVNGQIIDLFDGL 154 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ R + +G A R ED LRI+R RF A + I++ +A ++ L+ +S Sbjct: 155 TDLKERRLTAVGSALERFNEDALRIMRAMRFAATL-DFQIENKTFLAMCESAHLLEKISV 213 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ERI+ E +KLL ++ N + + G +K D+Q+ +L ++ + + F+ + Sbjct: 214 ERIFIEFDKLLLGQDWRNGLTLLLKSGAYK-YLPDLQDSALKKVLTDLSVDFHFQNSEQA 272 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + S D K+ L +K+ + E F+ + L ++ L++ + Sbjct: 273 WAALLTRFSNVDVKTFL---RKWKVSNEFAKFVADLVSAY----ELDSWDLMSLYHFGLE 325 Query: 323 KVMIA-KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 KV++ +LK+ L N LQ IH K + D + ++ + PG ++ Sbjct: 326 KVLLVDELKVAYGLKINREQAVTINNQLQ-----IHDKSEIVIAGKDLMEEFSLEPGPEL 380 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 G IL +++ + + + Q + ++K++ Sbjct: 381 GKILKIIEEKIVKNELKNEQAAIFAEVKKML 411 >gi|322385626|ref|ZP_08059270.1| polyA polymerase family protein [Streptococcus cristatus ATCC 51100] gi|321270364|gb|EFX53280.1| polyA polymerase family protein [Streptococcus cristatus ATCC 51100] Length = 401 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 122/206 (59%), Gaps = 11/206 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + + ++ VGG+VRD+L+N + D+DIA++ P+ + IFS+T + Sbjct: 12 EALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIASSAYPEEIKTIFSRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R+ D+ D R ++V F R + D RRD TINAL +Q Sbjct: 68 GIEHGTVLVLEGQGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDLTINALALNQ 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G+++D GL D++NRT++ +G A R ED LRI+R FRF A + D + L Sbjct: 128 EGEIVDLFNGLADMKNRTLRAVGVASERFNEDALRIMRGFRFQAGL---DFDLEDLTFQA 184 Query: 192 KAKKG--LKILSSERIWSEINKLLEA 215 A L+ +S ERI+ E +KLL A Sbjct: 185 MADCAPLLEKISVERIFIEFDKLLMA 210 >gi|281492122|ref|YP_003354102.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281375805|gb|ADA65302.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 398 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 107/391 (27%), Positives = 193/391 (49%), Gaps = 24/391 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK- 86 ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I I +GT+ ++ K Sbjct: 26 EAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFPYT----IDVGIEHGTVLVLAGKS 81 Query: 87 --KYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++++ITT R++ TD R V F RD + D RRDFT+NA D G++ID GL Sbjct: 82 EAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFACDVNGQIIDLFDGL 141 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ R + +G A R ED LRI+R RF A + I++ +A ++ L+ +S Sbjct: 142 TDLKERRLTAVGSALERFNEDALRIMRAMRFAATL-DFQIENKTFLAMCESAHLLEKISV 200 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ERI+ E +KLL ++ N + + G +K D+Q+ +L+++ + + F+ + Sbjct: 201 ERIFIEFDKLLLGQDWRNGLTLLLKSGAYK-YLPDLQDSALEKVLTDLSVDFHFQNSEQA 259 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + S D K+ L +K+ + E F+ + L ++ L++ + Sbjct: 260 WAALLTRFSNIDVKTFL---RKWKVSNEFAKFVADLVSAY----ELDSWDLMSLYHFGLE 312 Query: 323 KVMIA-KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 KV++ +LK+ L N LQ IH K + D + ++ + PG ++ Sbjct: 313 KVLLVDELKVAYGLKINREQAVTINNQLQ-----IHDKSEIVIAGKDLMEEFSLEPGPEL 367 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 G IL +++ + + + Q + ++K++ Sbjct: 368 GKILKIIEEKIVKNELKNEQAAIFAEVKKML 398 >gi|212638965|ref|YP_002315485.1| tRNA CCA-pyrophosphorylase [Anoxybacillus flavithermus WK1] gi|226702034|sp|B7GHS8|CCA_ANOFW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|212560445|gb|ACJ33500.1| tRNA nucleotidyltransferase [Anoxybacillus flavithermus WK1] Length = 397 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 15/204 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L + ++ VGGAVRD L+ + DIDIAT+ P VM IF +T +P I Sbjct: 9 LSVIETLKRHGHEAYFVGGAVRDYLLQRPIGDIDIATSAHPQEVMAIFPRT----VPVGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAK------VVFTRDWKADSLRRDFTINALYA 129 ++GT+ +I R +++TT R + GRY V F R D RRDFT+NA+ Sbjct: 65 AHGTVMVIERGISYEVTTFRKE----GRYEDYRRPKDVTFVRSLNEDLQRRDFTMNAIAM 120 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ G++ID GG+ L+ R I+ +GD R ED LR++R RF + G ++ ++ A Sbjct: 121 NEYGEIIDPFGGVEALKQRIIETVGDPAERFNEDALRMMRALRFVSQLG-FSLSTETKQA 179 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 I+ L+ ++ ERI E KLL Sbjct: 180 IIRYGHLLQHIAVERIAVEFEKLL 203 >gi|327385606|gb|AEA57080.1| Poly A polymerase [Lactobacillus casei BD-II] Length = 398 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 174/404 (43%), Gaps = 60/404 (14%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T T I Sbjct: 14 IPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRT----ADTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYA 129 +GT+ ++ +++TT R T+ RY V F R D RRDFTINAL Sbjct: 70 EHGTVMVLDHGTGYEVTTFR----TESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAV 125 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A Sbjct: 126 RHDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAA 184 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK-EIFLDVQEISLDQLSQ 248 K L +S ER+ +E N+LL + + +F + E +L Q SQ Sbjct: 185 IADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQ 244 Query: 249 VIE----------AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-----SLPREIRY 293 + + A +F + L ++L +W+ ++++ + +P + Sbjct: 245 LPDTQLTSLASGWAALIFLLRTQPL---VMLKAWKQSNELITLVTQTVKLLQVMPNPTAW 301 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 L + E++KL D+ +A+ L Sbjct: 302 DLYQAGEAAVTTAS----EVQKLLTPDFDQQQLAEAYAALP------------------- 338 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 IH KK L LTG D +K G+ PG +G L +Q + + Sbjct: 339 --IHSKKEL-ALTGADQIKAGVRPGPAMGKALNQIEQRVVAGAL 379 >gi|15639262|ref|NP_218711.1| polynucleotide adenylyltransferase (pcnA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025504|ref|YP_001933276.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum SS14] gi|3322543|gb|AAC65258.1| polynucleotide adenylyltransferase (pcnA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018079|gb|ACD70697.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum SS14] Length = 478 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 115/215 (53%), Gaps = 10/215 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N S D D+AT P+RV +F +T +PT I +GT+ I+ R + Sbjct: 26 VVGGAVRDFLLNRSAHDWDLATDAPPERVRMLFRRT----VPTGIEHGTVTILFRGHSIE 81 Query: 91 ITTLR--SDLITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 TT R SD +D R+ V F + D RRDFT+NA A G++ID GG DLR Sbjct: 82 CTTFRVESDY-SDRRHPDSVCFAARIEDDLARRDFTVNAFAAALPSGEIIDVCGGYADLR 140 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 N I +GDAH R ED LR LR RF A +I++ A I + +S ER+ Sbjct: 141 NGLICSVGDAHARFSEDALRPLRAVRFAAQLS-FSIEARTREAIIALRAHTARISRERVR 199 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E++K+L P A+ M G+ +F + ++ Sbjct: 200 DELSKMLCTPRPSIALRLMEETGLLHTLFPALAQV 234 >gi|223043110|ref|ZP_03613157.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus capitis SK14] gi|222443321|gb|EEE49419.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus capitis SK14] Length = 400 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 11/224 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD LM + DIDI T+ P+ + IF KT IP +GTI ++ + Sbjct: 22 EAYFVGGSVRDYLMGRDIHDIDITTSATPNEIEDIFEKT----IPIGKEHGTINVVYHHE 77 Query: 88 YFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D + R ++V F RD D RRDFT+NA+ D K DY G DL Sbjct: 78 NYEVTTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTVNAIAMDSNYKTYDYFEGERDL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + R I+ +G+ R ED LRI+R RF A K +D + A K ++ LS ERI Sbjct: 138 KERLIRTVGEPRERFEEDALRIIRGLRFQAQLNFKIVD-NTFDAMRKQIADIQYLSVERI 196 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI----FLDVQEISLDQ 245 E+ KL++ N + M FK I ++Q + +D+ Sbjct: 197 VIELKKLIKGINVAQSFNQMKEIDAFKHIPFFNSFNMQRVHIDE 240 >gi|223932104|ref|ZP_03624108.1| Polynucleotide adenylyltransferase region [Streptococcus suis 89/1591] gi|302023723|ref|ZP_07248934.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 05HAS68] gi|330832758|ref|YP_004401583.1| CCA-adding enzyme [Streptococcus suis ST3] gi|223899085|gb|EEF65442.1| Polynucleotide adenylyltransferase region [Streptococcus suis 89/1591] gi|329306981|gb|AEB81397.1| CCA-adding enzyme [Streptococcus suis ST3] Length = 403 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 116/204 (56%), Gaps = 7/204 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+++ + D+DIAT+ P +IFS+T I Sbjct: 12 EALPILEKIKAAGYEAYFVGGSVRDAILGRPIHDVDIATSSYPQETKQIFSRT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ KK ++ITT R++ + R ++V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + ++ID G+ DL NRT++ +G R ED LRI+R FRF A + I+ A + Sbjct: 128 EAQIIDLFEGMTDLENRTLRAVGIPAERFNEDALRIMRGFRFAATL-DFEIEPTTFEAMV 186 Query: 192 KAKKGLKILSSERIWSEINKLLEA 215 K L+ +S ER + E +KLL A Sbjct: 187 KTAPLLEKISVERSFIEFDKLLMA 210 >gi|154505528|ref|ZP_02042266.1| hypothetical protein RUMGNA_03065 [Ruminococcus gnavus ATCC 29149] gi|153794186|gb|EDN76606.1| hypothetical protein RUMGNA_03065 [Ruminococcus gnavus ATCC 29149] Length = 444 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 7/189 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++N +D DI T+ P++V RIF +T + T I +GT+ ++ K F++ Sbjct: 26 VGGCVRDSILNRKPEDWDITTSAKPEQVKRIFRRT----VDTGIEHGTVTVLIGKDGFEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D L DGR+ K V FT + D RRDFTINA+ + +++D GG+ DL Sbjct: 82 TTYRVDGLYEDGRHPKEVTFTSRLEEDLKRRDFTINAMAYNDDERLVDAFGGMRDLNYHL 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +GD R ED LRILR RF A I+ + A L+ +S+ERI +E+ Sbjct: 142 IRCVGDPKERFSEDALRILRAVRFSAQLAFP-IEPETAEAIKSLAPNLEKISAERIQAEL 200 Query: 210 NKLLEAKNP 218 KLL + +P Sbjct: 201 VKLLVSDHP 209 >gi|62185492|ref|YP_220277.1| putative poly A polymerase [Chlamydophila abortus S26/3] gi|62148559|emb|CAH64330.1| putative poly A polymerase [Chlamydophila abortus S26/3] Length = 410 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L N G ++ VGG VRD LM +++IDIAT+ P V IF T + ++ Sbjct: 13 LLKLRNAGY-QAYFVGGCVRDMLMGKPIEEIDIATSAPPVIVSTIFPDT----LAIGAAF 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 G I + + F++ T RSD TDGR+ + V K D+LRRDFTIN +Y D + K+ Sbjct: 68 GIIVVKENNRLFEVATFRSDENYTDGRHPERVIFSSMKEDALRRDFTINGMYYDPFEEKL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D V G DL R I+ IG R ED LRILR RF + G +D A IK Sbjct: 128 YDLVEGRRDLEKRVIRAIGHPKLRFSEDKLRILRAIRFSSSLG-FTLDPATERAIIKEAP 186 Query: 196 GLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 L +S ERIW E+ K+L+ KNP A+ + I IF ++++I Sbjct: 187 SLVCSVSPERIWQELKKMLK-KNPYEALSLLIQLKIMTIIFPELRDIP 233 >gi|30024049|ref|NP_267715.2| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. lactis Il1403] gi|73619785|sp|Q9CFC2|CCA_LACLA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|326407027|gb|ADZ64098.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 398 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 108/391 (27%), Positives = 192/391 (49%), Gaps = 24/391 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK- 86 ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I I +GT+ ++ K Sbjct: 26 EAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFPYT----IDVGIEHGTVLVLAGKS 81 Query: 87 --KYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++++ITT R++ TD R V F RD + D RRDFTINA D G++ID GL Sbjct: 82 EAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTINAFACDVNGQIIDLFDGL 141 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ R + +G A R ED LRI+R RF A + I++ +A ++ L+ +S Sbjct: 142 TDLKERRLTAVGSALERFNEDALRIMRAMRFAATL-DFQIENKTFLAMCESAHLLEKISV 200 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ERI+ E +KLL ++ N + + G +K D+Q+ +L ++ + + F+ + Sbjct: 201 ERIFIEFDKLLLGQDWRNGLTLLLKSGAYK-YLPDLQDSALKKVLTDLSVDFHFQNSEQA 259 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + S D K+ L +K+ + E F+ + L ++ L++ + Sbjct: 260 WAALLTRFSNVDVKTFL---RKWKVSNEFAKFVADLVSAY----ELDSWDLMSLYHFGLE 312 Query: 323 KVMIA-KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 KV++ +LK+ L N LQ IH K + D + ++ + PG ++ Sbjct: 313 KVLLVDELKVAYGLKINREQAVTINNQLQ-----IHDKSEIVIAGKDLMEEFSLEPGPEL 367 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 G IL +++ + + + Q + ++K++ Sbjct: 368 GKILKIIEEKIVKNELKNEQAAIFAEVKKML 398 >gi|328957360|ref|YP_004374746.1| tRNA CCA-pyrophosphorylase [Carnobacterium sp. 17-4] gi|328673684|gb|AEB29730.1| tRNA CCA-pyrophosphorylase [Carnobacterium sp. 17-4] Length = 401 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 114/207 (55%), Gaps = 10/207 (4%) Query: 12 DSDLINILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 D L +++K E+ K+ VGG+VRD+L+N + D+DIAT+ P+ + IF KT Sbjct: 5 DHQFKQALPIIDKIEEAGFKAYFVGGSVRDTLLNKPINDVDIATSAKPNEIKGIFPKT-- 62 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA 126 I I +GT+ ++ + ++ITT R++ R V F R K D RRDFTINA Sbjct: 63 --IDVGIEHGTVMVLWKDASYEITTFRTESTYQDFRRPDTVEFVRSLKEDLKRRDFTINA 120 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 L ++ G++IDY G DL N+ IK +G R ED LR++R RF + N+DS+ Sbjct: 121 LAMNRDGEIIDYFNGQKDLENKLIKAVGIPEERFFEDALRMMRGVRFVSQLN-FNMDSET 179 Query: 187 LVASIKAKKGLKILSSERIWSEINKLL 213 A K LK ++ ERI E KLL Sbjct: 180 EAAIQKNHPLLKKIAIERIQVEFVKLL 206 >gi|32267207|ref|NP_861239.1| poly(A) polymerase [Helicobacter hepaticus ATCC 51449] gi|32263260|gb|AAP78305.1| poly(A) polymerase [Helicobacter hepaticus ATCC 51449] Length = 468 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 128/436 (29%), Positives = 199/436 (45%), Gaps = 73/436 (16%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLS------VQDIDIATTILPDRVMRIFSKTR 67 +++ IL L ++ IVGG VRD L+ + + D DI T+ LP VM++F+ T Sbjct: 48 EVLYILESLQSAGYEAYIVGGCVRDMLLAQNSHIPYVINDYDITTSALPQEVMKLFAHT- 106 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRD 121 I T + YGTI ++ + +++TT R DG Y V FTR D RRD Sbjct: 107 ---IHTGLKYGTISVLIESQSYEVTTFR----IDGSYINARSPKNVTFTRSLAQDLQRRD 159 Query: 122 FTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-E 179 FTINAL YA G +ID VGGL DL+++ I +GDA R+ ED LRILR RF + G E Sbjct: 160 FTINALAYAPCSG-LIDEVGGLADLQHKRIVCVGDAFARLNEDILRILRALRFSSTLGFE 218 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-- 237 + + + S+ +K L ++ ERI E KLL G + ++ LD Sbjct: 219 IDFHTKEAIFSLSSKVCL--IAKERIRVEFTKLL--------------CGAWVKVVLDEF 262 Query: 238 ---VQEISLDQLSQVIEAEQVFEWKIDSL---------LRFIVLISWQDK---KSILSMA 282 + EI L Q+ ++I +++ + L L ++ + D+ + IL Sbjct: 263 RFVISEI-LSQMREIIANNTLWQHTLSILDNLTPRSHTLAWVAFLYHTDELKARDILQSL 321 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 K + ++ L+ + N ++ + L + G K A K L L + Sbjct: 322 KFDTYNKDYICSLLVYVKKPLNNNLTTLKTM--LVDMGGRKKGEAMFKDMLKLKVAVINA 379 Query: 343 QDTC----------FILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHC 388 QDT I +L ++ PL L G D++ G+P GK++G IL Sbjct: 380 QDTADKAQKLQMLDSIHSLLECVLASSVPLELKELCLNGRDLIYIGVPKGKRIGEILHFL 439 Query: 389 KQEWINSSFQLSQEDL 404 QE ++ ++E L Sbjct: 440 HQEVLHERVSNTKEAL 455 >gi|187779033|ref|ZP_02995506.1| hypothetical protein CLOSPO_02628 [Clostridium sporogenes ATCC 15579] gi|187772658|gb|EDU36460.1| hypothetical protein CLOSPO_02628 [Clostridium sporogenes ATCC 15579] Length = 450 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 5/208 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINTLQENNYEAYIVGGAVRDSLLERKVNDWDITTSADPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINAL-YADQQGK 134 GT+ I+ +++TT R D D R K V FT + K D RRD TINA+ Y D++G Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKKG- 135 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +IDY GL DL N+ I+ +G++ R ED LR+LR RF + +S + Sbjct: 136 LIDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFHMEESTKFNIR-ELS 194 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAI 222 K + +S ERI E+ K+L + P+ I Sbjct: 195 KNINNVSMERIRDELCKILVSSQPVYGI 222 >gi|162447078|ref|YP_001620210.1| poly(A) polymerase family protein [Acholeplasma laidlawii PG-8A] gi|161985185|gb|ABX80834.1| poly(A) polymerase family protein [Acholeplasma laidlawii PG-8A] Length = 382 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 121/218 (55%), Gaps = 8/218 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L K ++ +VGG VRD LM DIDI T+ P VM+ F K +PT I Sbjct: 8 NLIRDLKKHGYQAYLVGGVVRDFLMKAKFSDIDITTSAKPYEVMKHF-----KAVPTGIK 62 Query: 77 YGTIKIICRKKYFDITTLRSDLIT-DGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 YGTI I+ F++TT R+D T D R+ V+++ + D +RRDFT+N + D+ Sbjct: 63 YGTITIMYDNVSFEVTTFRTDGPTSDFRHPDSVIYSDNVNDDVMRRDFTMNGILMDEYQN 122 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + DYVGG D+ ++ I+ IGD + R ED LR+LR F F + G + I+ A Sbjct: 123 IYDYVGGQRDIEHKIIRAIGDPNERFKEDALRMLRAFYFQSKLGFE-IEPVTKQAIQDNA 181 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +K L+ ERI +E+ K+L+ K+ A+ M GI K Sbjct: 182 HLIKELAMERIHAELIKILKGKHLKTALNSMIETGIHK 219 >gi|322377862|ref|ZP_08052351.1| polyA polymerase [Streptococcus sp. M334] gi|321281285|gb|EFX58296.1| polyA polymerase [Streptococcus sp. M334] Length = 399 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 111/408 (27%), Positives = 195/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++S+ A Sbjct: 130 EIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELESETFKAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L+ +S ER + E +KLL A + M + +L S D+L+++ + E Sbjct: 189 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 246 Query: 254 QVFEWKID-----SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 F ++ +LL + + + Q +++F+ ++++ L TL Sbjct: 247 TNFTFESSEQAWAALLWALEIENAQPFLKAWKTSRQFA--KQVQDLLT----------TL 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSDI-----IHWKKPL 362 ++ E +L K + + L L NL Q Q +++I IH KK + Sbjct: 295 ALREKGEL-----SKRDCYRFDLDLLLQAENLRQAQGKPVNPQAITEIYQSLTIHDKKEI 349 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++ +H LR+ Sbjct: 350 QINGGILIKEYGYQPGPDLGEILTEIEYAIVDGELENDRQAIHTYLRE 397 >gi|329943259|ref|ZP_08292033.1| poly A polymerase head domain protein [Chlamydophila psittaci Cal10] gi|332287838|ref|YP_004422739.1| poly A polymerase [Chlamydophila psittaci 6BC] gi|313848410|emb|CBY17414.1| putative poly A polymerase [Chlamydophila psittaci RD1] gi|325506735|gb|ADZ18373.1| poly A polymerase [Chlamydophila psittaci 6BC] gi|328814806|gb|EGF84796.1| poly A polymerase head domain protein [Chlamydophila psittaci Cal10] gi|328915099|gb|AEB55932.1| polynucleotide adenylyltransferase [Chlamydophila psittaci 6BC] Length = 410 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 123/237 (51%), Gaps = 10/237 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L N G ++ VGG VRD LM +++IDIAT+ P V IF T + ++ Sbjct: 13 LLKLRNAGY-QAYFVGGCVRDMLMGKPIEEIDIATSAPPVIVSTIFPDT----LALGAAF 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 G I + + F++ T RSD DGR+ + V K D+LRRDFTIN +Y D + K+ Sbjct: 68 GIIVVKENNRLFEVATFRSDENYQDGRHPERVIFSSMKEDALRRDFTINGMYYDPFEEKL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D V G DL R I+ IG R ED LRILR RF + G +D A IK Sbjct: 128 FDLVEGRRDLEKRVIRAIGHPKLRFSEDKLRILRAIRFSSSLG-FTLDPATERAIIKEAP 186 Query: 196 GLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L+ KNP A+ + I IF ++++I L IE Sbjct: 187 SLVCSVSPERIWQELKKMLK-KNPYEALSLLIRLKIITVIFPELRDIPPSLLRTSIE 242 >gi|227513326|ref|ZP_03943375.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus buchneri ATCC 11577] gi|227524470|ref|ZP_03954519.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus hilgardii ATCC 8290] gi|227083199|gb|EEI18511.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus buchneri ATCC 11577] gi|227088340|gb|EEI23652.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus hilgardii ATCC 8290] Length = 405 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 177/366 (48%), Gaps = 28/366 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+++ + D+DIAT+ P V +F +T T I +GT+ I+ Sbjct: 31 EAYFVGGSVRDTILQRPIHDVDIATSAYPSEVKSLFKRT----ADTGIEHGTVMILDHGT 86 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R KV F R K D RRDFTINAL + GK+ D GGLND+ Sbjct: 87 GYEVTTFRTESGYQDYRRPDKVTFVRSLKEDLKRRDFTINALALSENGKITDLFGGLNDM 146 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + I+ +GD R ED LR++R RF + K I+ L + LK ++ ERI Sbjct: 147 SKKIIRAVGDPEERFNEDALRMMRAVRFASQLDFK-IEQQTLTGIYDHSELLKKIAVERI 205 Query: 206 WSEINKLL---EAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKI 260 SE K++ +AKN LN ++ +++ V + S L L +++ + ++ Sbjct: 206 HSEFVKMMLGVDAKNGLNLMIK-------SQLYQFVPDFSEHLTVLQKIVATHFDLDNEV 258 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 F + + ++ ++S K++ +I +I F K+ + ++ Y Sbjct: 259 QVWALFTSMFQF-NRDQVISFLKRWKTANKIINDVILTTELIFQIKSHKVGNLE--LYKA 315 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI-PPGK 379 G + + + I +N T D+ +++ + K +TG D++K GI PG Sbjct: 316 GKQNVQNAVAII-----SNYTDFDSAKLIKAYDQLPITTKKQLNVTGGDLIKRGILNPGP 370 Query: 380 KVGNIL 385 K+G L Sbjct: 371 KLGETL 376 >gi|314933641|ref|ZP_07841006.1| polyA polymerase [Staphylococcus caprae C87] gi|313653791|gb|EFS17548.1| polyA polymerase [Staphylococcus caprae C87] Length = 400 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 11/224 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD LM + DIDI T+ P+ + IF KT IP +GTI ++ + Sbjct: 22 EAYFVGGSVRDYLMGREIHDIDITTSATPNEIEDIFEKT----IPIGKEHGTINVVYHHE 77 Query: 88 YFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D + R ++V F RD D RRDFT+NA+ D K DY G DL Sbjct: 78 NYEVTTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTVNAIAMDSNYKTYDYFEGERDL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + R I+ +G+ R ED LRI+R RF A K +D + A K ++ LS ERI Sbjct: 138 KERLIRTVGEPRERFEEDALRIIRGLRFQAQLDFKIVD-NTFDAMRKQIADIQYLSIERI 196 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI----FLDVQEISLDQ 245 E+ KL++ N + M FK I ++Q + +D+ Sbjct: 197 VVELKKLIKGINVAQSFNQMKEIDAFKHIPFFNSFNMQRVHIDE 240 >gi|311068759|ref|YP_003973682.1| tRNA CCA-pyrophosphorylase [Bacillus atrophaeus 1942] gi|310869276|gb|ADP32751.1| tRNA CCA-pyrophosphorylase [Bacillus atrophaeus 1942] Length = 397 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L+ L + ++ VGGAVRDS M ++ D+DIAT P+ V R+F +T + Sbjct: 9 LPVLNTLIEAGHQAYFVGGAVRDSYMKRAIGDVDIATDAAPNEVERLFKRT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ + +++TT R SD R ++V F + D RRDFTINA+ G Sbjct: 65 EHGTIIVLWEDETYEVTTFRTESDYQDYRRPSEVHFITSLEEDLKRRDFTINAMAMKTDG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++IDY GG D+ ++ I+ +G R ED LR+LR RF + G S+ A+I+ Sbjct: 125 ELIDYFGGRQDIDHQLIRTVGKPEDRFQEDALRMLRAIRFMSQLG--FALSEETAATIER 182 Query: 194 KKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI--FLDVQE 240 + L+ +S ER E KLL+ K+ +A+ M G+F+E+ F D +E Sbjct: 183 SRSLLRYVSVERKTVEFEKLLQGKSCSSALRMMVKTGLFEELPGFSDKKE 232 >gi|227510319|ref|ZP_03940368.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189971|gb|EEI70038.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 405 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 177/366 (48%), Gaps = 28/366 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+++ + D+DIAT+ P V +F +T T I +GT+ I+ Sbjct: 31 EAYFVGGSVRDTILQRPIHDVDIATSAYPSEVKGLFKRT----ADTGIEHGTVMILDHGT 86 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R KV F R K D RRDFTINAL + GK+ D GGLND+ Sbjct: 87 GYEVTTFRTESGYQDYRRPDKVTFVRSLKEDLKRRDFTINALALSENGKITDLFGGLNDM 146 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + I+ +GD R ED LR++R RF + K I+ L + LK ++ ERI Sbjct: 147 SKKIIRAVGDPEERFNEDALRMMRAVRFASQLDFK-IEEQTLTGIYDHSELLKKIAVERI 205 Query: 206 WSEINKLL---EAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKI 260 SE K++ +AKN LN ++ +++ V + S L L +++ + ++ Sbjct: 206 HSEFVKMMLGVDAKNGLNLMIK-------SQLYQFVPDFSEHLTVLQKIVATHFDLDNEV 258 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 F + + ++ ++S K++ +I +I F K+ + ++ Y Sbjct: 259 QVWALFTSMFQF-NRDQVISFLKRWKTANKIINDVILTTELIFQIKSQKVGNLE--LYKA 315 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI-PPGK 379 G + + + I +N T D+ +++ + K +TG D++K GI PG Sbjct: 316 GKQNVKNAVTII-----SNYTDFDSAKLIKAYDQLPITTKKQLNVTGGDLIKRGILNPGP 370 Query: 380 KVGNIL 385 K+G L Sbjct: 371 KLGETL 376 >gi|310642529|ref|YP_003947287.1| polynucleotide adenylyltransferase region [Paenibacillus polymyxa SC2] gi|309247479|gb|ADO57046.1| Polynucleotide adenylyltransferase region [Paenibacillus polymyxa SC2] Length = 440 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L ++ VGG VRD L+ ++ D+D+ T+ P+ V+ +F VIPT I Sbjct: 19 DVIHTLTTAGHEAYWVGGCVRDELLGRAIHDMDLTTSAEPEEVLALFPH----VIPTGIQ 74 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ F++TT R++ TD R +V F +D + D +RRDFT+NA+ + G+ Sbjct: 75 HGTVTVMQDGHAFEVTTFRTESGYTDHRRPTEVSFVKDIREDLMRRDFTMNAIAMAEHGE 134 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GG DLR ++ +G A R ED LR+LR RF + + + + I+ + Sbjct: 135 RVDPFGGEADLRAALVRCVGRAEERFEEDGLRMLRCIRFASVF-RFRVAYNTWKGMIRRR 193 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF--KEIFLDVQEISLDQLSQVIEA 252 +GL+ ++ ER+ E+ K+L +PL + + G+ ++ + ++ L ++++ Sbjct: 194 EGLRHIAMERVRVELEKMLAGPDPLRGLEMLGRSGLLGCTKVPVPWEQCDAQALKEILQL 253 Query: 253 EQVFEWKI 260 W + Sbjct: 254 PAELRWGL 261 >gi|23099220|ref|NP_692686.1| poly(A)polymerase [Oceanobacillus iheyensis HTE831] gi|73619814|sp|Q8EQD6|CCA_OCEIH RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|22777449|dbj|BAC13721.1| poly(A)polymerase [Oceanobacillus iheyensis HTE831] Length = 400 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ L + VGG VRD L+ + DIDIAT+ P+ VM +F K VIP I + Sbjct: 12 ILTTLISNGYEGYFVGGCVRDLLLQKDIHDIDIATSATPNEVMHLFKK----VIPVGIEH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + + +++TT R D TD R V F + D RRDFTINAL D G++ Sbjct: 68 GTVIVRHGGESYEVTTYRQDGEYTDHRRPNDVRFVTNLAEDLRRRDFTINALAMDTSGQI 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G +DL+ + I+ +G+A R ED LRILR RF + G I D L A +K Sbjct: 128 TDLFHGQDDLKKKLIRTVGNAEERFTEDALRILRAVRFSSQLG-CTIQEDTLEAMFVIRK 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 ++ L+ ERI E+ KL + ++ AI Sbjct: 187 QIQHLAVERITIELTKLFQGQHVSKAI 213 >gi|227553358|ref|ZP_03983407.1| possible tRNA CCA-pyrophosphorylase [Enterococcus faecalis HH22] gi|227177509|gb|EEI58481.1| possible tRNA CCA-pyrophosphorylase [Enterococcus faecalis HH22] Length = 241 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 110/192 (57%), Gaps = 7/192 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLLEAKN 217 E K+L N Sbjct: 201 TIEFVKMLLGVN 212 >gi|315185643|gb|EFU19411.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta thermophila DSM 6578] Length = 461 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 120/216 (55%), Gaps = 9/216 (4%) Query: 29 SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 SC IVGGA+R+ + +D D+AT P VM++F + VIPT I +GT+ I+ R Sbjct: 30 SCYIVGGALRNLALGTPPEDYDLATDAPPREVMKLFRR----VIPTGIQHGTVTIVFRDH 85 Query: 88 YFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLND 144 +++TT R + +DGR+ +V FT + D RRDFTINA+ D G+ D G +D Sbjct: 86 CYEVTTFRVETSYSDGRHPDEVRFTTSLEEDLSRRDFTINAMALDPLTGEFFDPFDGYSD 145 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ R IK IG+ R ED LRILR RF +I+ + A + + L+ +S ER Sbjct: 146 IKRRLIKAIGNPEERFEEDALRILRAIRFATQLS-FSIEQETYTAIGRHVEHLRRISWER 204 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I E++K++EA P + M GI + ++++ Sbjct: 205 IRDELSKIMEAVRPSRGFLQMEETGILSIVLPELEK 240 >gi|225868453|ref|YP_002744401.1| CCA-adding enzyme [Streptococcus equi subsp. zooepidemicus] gi|225701729|emb|CAW99090.1| CCA-adding enzyme [Streptococcus equi subsp. zooepidemicus] Length = 404 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 138/255 (54%), Gaps = 8/255 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRDSL+N + D+DIA + P+ IF +T I I +GT+ ++ Sbjct: 27 EAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIFPRT----IDVGIEHGTVLVLENGS 82 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G+VID GL DL Sbjct: 83 EYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEDGQVIDIFNGLEDL 142 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +++ ++ +G R ED LRI+R FRF A + +I+++ A L+ +S ER Sbjct: 143 KHKLLRAVGRPQERFEEDALRIMRGFRFAASL-DFDIETETFEAMKSHAPLLEKISVERS 201 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 + E++KLL A I+ M F + L +E +L + + + A+ VF+ + Sbjct: 202 FIELDKLLMAPKWRKGILAMIACQAFNYLPGLVGKEEALQKYLKTLAADYVFQDNHQAWA 261 Query: 265 RFIVLISWQDKKSIL 279 +V++ K+ L Sbjct: 262 YLLVMLELDQPKAFL 276 >gi|225573952|ref|ZP_03782597.1| hypothetical protein RUMHYD_02046 [Blautia hydrogenotrophica DSM 10507] gi|225038790|gb|EEG49036.1| hypothetical protein RUMHYD_02046 [Blautia hydrogenotrophica DSM 10507] Length = 447 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 116/204 (56%), Gaps = 7/204 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL +L+ ++ +VGG VRDS++ + D DI T+ P+ V ++F +T + T + Sbjct: 11 EILDILHSHGYEAYVVGGCVRDSILARTPDDWDITTSAKPEEVKKLFRRT----VDTGLQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ +++TT R D D R+ K V FT + D RRDFTINA+ +Q+ Sbjct: 67 HGTVTVLLGNDGYEVTTYRLDGEYEDSRHPKEVTFTSSLEEDLKRRDFTINAMAYNQEEG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG+ DL+ + I+ +G+ R ED LRI+R RF A G ID A + Sbjct: 127 LVDLFGGMRDLQGKVIRAVGEPKERFTEDALRIMRAVRFSAQLG-FTIDEKTYEALAELS 185 Query: 195 KGLKILSSERIWSEINKLLEAKNP 218 LK +S+ERI E+ K+L +K+P Sbjct: 186 PNLKHISAERIQVELVKILTSKHP 209 >gi|169827541|ref|YP_001697699.1| CCA-adding enzyme [Lysinibacillus sphaericus C3-41] gi|168992029|gb|ACA39569.1| CCA-adding enzyme [Lysinibacillus sphaericus C3-41] Length = 392 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 15/220 (6%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L + ++ IVGGAVRD+L+N D+D+AT LP+ V +F +T + I Sbjct: 12 SVIEQLEQAGFEAVIVGGAVRDALLNRPAHDVDVATNALPEEVKSVFQRT----VDIGIQ 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYAD 130 +GT+ +I ++TT R TDG Y KV F R + D RRDFT+NA+ Sbjct: 68 HGTVLVIVPAGPVEVTTYR----TDGEYTDHRRPDKVQFVRSLQDDLQRRDFTMNAIAMR 123 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +DY GG D+ R I+ +GDA R ED LR+LR RF A + I D + A Sbjct: 124 HDGTFVDYYGGRQDIELRVIRAVGDADKRFAEDALRMLRAIRFSAQL-DFTIAKDTMTAI 182 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + ++ ERI +E++KL + + + + G+ Sbjct: 183 QNRAPDIAFIAKERIKAELDKLWLGTSVFSGLQKLEESGL 222 >gi|310657862|ref|YP_003935583.1| poly a polymerase family protein [Clostridium sticklandii DSM 519] gi|308824640|emb|CBH20678.1| Poly A polymerase family protein [Clostridium sticklandii] Length = 444 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I++++ + ++ IVGG++RDSL+ + +DIDIA++ P + RIF+ YK I T Sbjct: 9 EALEIINIIEESGYEAYIVGGSLRDSLLGMQPKDIDIASSASPTEIKRIFNS--YKTIDT 66 Query: 74 SISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ +I K +ITT RS+ + R V F ++ D RRDFTINA+ +Q Sbjct: 67 GIDFGTVTLIYNDKPVEITTFRSESVYLDSRRPDSVSFEKNVDEDLKRRDFTINAMAYNQ 126 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 K++D G DL N+ I+ +G R ED LR+LR R FA +I+ A Sbjct: 127 SKKLVDLFSGEEDLNNKLIRCVGSPDERFSEDALRMLRAVR-FACVLNFDIEKKTFEAIK 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 ++ +S ERI +E+NK+L + P I + + + I ++ +S Sbjct: 186 HNASRIEYISKERIQAELNKILMSSKPSRGIRLLLDSKLLDYILPEISRLS 236 >gi|295109530|emb|CBL23483.1| uncharacterized domain HDIG [Ruminococcus obeum A2-162] Length = 441 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 134/247 (54%), Gaps = 22/247 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S+ IL +L + ++ +VGG VRDS++ + D DI T+ P++V +F +T + Sbjct: 7 SNAEKILHILEENGYEAYVVGGCVRDSILGRAPDDWDITTSASPEQVKELFHRT----VD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ K+ +++TT R D DGR+ K V+FT + D RRDFTINA+ Sbjct: 63 TGLQHGTVTVLMDKEGYEVTTYRVDGDYEDGRHPKQVMFTSSLEEDLKRRDFTINAMAYH 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGL 187 ++D G+ D++ + I+ +GD R ED LRILR RF A G EK +G+ Sbjct: 123 PVRGLVDLFHGMEDMQAKIIRCVGDPMERFHEDALRILRAVRFSAQLGFTIEKET-KNGI 181 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A LK +S+ERI +E+ KLL + +P + + Y GI KE L + Sbjct: 182 RA---LAPNLKCVSAERIQTELVKLLASPHP-DYLRVAYETGITKEF--------LPEFD 229 Query: 248 QVIEAEQ 254 + +E EQ Sbjct: 230 RCMETEQ 236 >gi|331265998|ref|YP_004325628.1| tRNA nucleotidyltransferase [Streptococcus oralis Uo5] gi|326682670|emb|CBZ00287.1| tRNA nucleotidyltransferase [Streptococcus oralis Uo5] Length = 394 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 7/202 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL+N+ ++ +G A R ED LRI+R FRF A G K ++S+ VA Sbjct: 125 EIIDLFHGLEDLKNQVLRAVGVASERFNEDALRIMRGFRFQASLGFK-LESETFVAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 184 TPLLEKISVERTFVEFDKLLLA 205 >gi|313113897|ref|ZP_07799456.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623776|gb|EFQ07172.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 477 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 5/199 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L L++ + +VGG VRDSL+ L+ D D+ T+ LP +VM +F R I Sbjct: 6 DEGAAELLDTLHRAGYAAYVVGGCVRDSLLGLTPHDWDLCTSALPQQVMELFGAQR--CI 63 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 PT + +GT+ + ++ITT R++ TDGR+ +V F D + D RRD TINA+ Sbjct: 64 PTGLQHGTVTVKQSGALYEITTFRTEGTYTDGRHPDEVHFVPDVREDLARRDLTINAMAY 123 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++ +ID GG DL++ ++ +G R ED LRILR +RF A +G ID A Sbjct: 124 NEKEGLIDPFGGQADLQSGILRAVGVPRQRFTEDALRILRLYRFAARFG-FAIDPPTAQA 182 Query: 190 SIKAKKGLKILSSERIWSE 208 + + L +S ERI E Sbjct: 183 AQELCAHLDCVSVERIEEE 201 >gi|239636869|ref|ZP_04677868.1| cca-adding enzyme [Staphylococcus warneri L37603] gi|239597543|gb|EEQ80041.1| cca-adding enzyme [Staphylococcus warneri L37603] Length = 400 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 111/210 (52%), Gaps = 7/210 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ + + ++ VGG+VRD LM + DIDI T+ PD + IF T IP + Sbjct: 12 ILNQIQQHGYQAYFVGGSVRDYLMQRPIHDIDITTSATPDEIESIFDHT----IPIGKEH 67 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI ++ + +++TT R++ I R + V F RD D RRDFTINA+ D + Sbjct: 68 GTINVVYNHENYEVTTFRAEEEYIDHRRPSDVHFVRDLYEDVQRRDFTINAIAMDTDYQT 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 DY G +D++N I+ +G R ED LRILR RF + K I++ A + Sbjct: 128 FDYFNGEDDIKNGIIRTVGQPTERFEEDALRILRGLRFQSQLNFK-IENHTFKAMANQIE 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHM 225 +K LS ERI E+ KL+ +N + H+ Sbjct: 187 DIKYLSIERIIVELKKLISGRNVATSYHHL 216 >gi|166033172|ref|ZP_02236001.1| hypothetical protein DORFOR_02894 [Dorea formicigenerans ATCC 27755] gi|166027529|gb|EDR46286.1| hypothetical protein DORFOR_02894 [Dorea formicigenerans ATCC 27755] Length = 443 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 113/206 (54%), Gaps = 8/206 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++ QD DI T+ +P +F KT T I +GTI ++ + +++ Sbjct: 29 VGGCVRDSVLGRIPQDWDITTSAMPQETKTLFDKT----FDTGIEHGTITVLLDHEGYEV 84 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FTR K D LRRDFTINA+ + ++D GG+ DL+ Sbjct: 85 TTYRIDGKYEDNRHPKEVTFTRSLKEDLLRRDFTINAMAYNDADGLVDIFGGMEDLKKGV 144 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +GDA R ED LRILR RF A G + ID + +A + L+ +S+ERI E+ Sbjct: 145 IRCVGDATARFSEDALRILRGIRFAAQLGFE-IDDEARMAMKELAPTLRKISAERIQVEL 203 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIF 235 K L + P + + Y GI K+ Sbjct: 204 VKTLVSDRP-DMLRTAYELGITKQFL 228 >gi|160881945|ref|YP_001560913.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium phytofermentans ISDg] gi|160430611|gb|ABX44174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium phytofermentans ISDg] Length = 459 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 14/254 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDSL+ D DI T+ P V +IFS+T I T I +GT+ ++ K+ F++ Sbjct: 26 VGGCVRDSLLGRIPGDWDITTSANPCEVKQIFSRT----IDTGIKHGTVTVMLGKEGFEV 81 Query: 92 TTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V +T++ D RRDFTINA+ + + ++D GL DL+++ Sbjct: 82 TTYRLDGEYEDNRHPKQVEYTKNLIEDLKRRDFTINAMAYNAKDGLVDEFEGLKDLQDKK 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKK-GLKILSSERIWS 207 I+ +G A R ED LRILR RF A N D +A+I+ K LK +S+ERI Sbjct: 142 IRCVGSADQRFDEDALRILRAVRFSAQL---NFTIEDETLAAIRLKALNLKNISAERIRE 198 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+NKLL + +P I+ Y G+ + I + ++ +L + V E +++L F Sbjct: 199 ELNKLLLSSHP-KKIMIAYETGLTEVILPEFDQMLATKLQGPYQQSSVGEHTLEALRYFT 257 Query: 268 VLIS--WQDKKSIL 279 +S +DKK L Sbjct: 258 KNLSKDVEDKKQQL 271 >gi|70726456|ref|YP_253370.1| tRNA CCA-pyrophosphorylase [Staphylococcus haemolyticus JCSC1435] gi|123660233|sp|Q4L6G1|CCA_STAHJ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|68447180|dbj|BAE04764.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 400 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 7/192 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD LMN + DIDI T+ PD + IF KT IP +GTI ++ + Sbjct: 22 EAYFVGGSVRDYLMNRHIHDIDITTSATPDEIESIFEKT----IPIGREHGTINVVYQGT 77 Query: 88 YFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ + R ++V F RD K D RRDFTINA+ D+ + DY G L Sbjct: 78 NYEVTTFRAEAEYVDHRRPSEVYFVRDLKEDLQRRDFTINAIAMDKNFNIYDYFEGDVAL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 IK +GDA R ED LRILR RF + I+ D A ++ LS ERI Sbjct: 138 NQHIIKTVGDAKERFKEDALRILRGLRFQSQLN-FTIEGDTFEAMKHQIADVEHLSIERI 196 Query: 206 WSEINKLLEAKN 217 E+ KL++ +N Sbjct: 197 VVELKKLIKGQN 208 >gi|237745324|ref|ZP_04575805.1| poly(a) polymerase [Fusobacterium sp. 7_1] gi|229432553|gb|EEO42765.1| poly(a) polymerase [Fusobacterium sp. 7_1] Length = 442 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 121/219 (55%), Gaps = 10/219 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D T + + + +IFS+ Y T Sbjct: 14 IKILNKLNKC-GKGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKIFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 S+G ++I ++I R D+ G+ KV F D + D RRDFTINA+ ++ + Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDIY--GKEKKVSFVDDIRNDLARRDFTINAMAYNEIDGI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAK 194 ID GG D+ N+ I F+G+ RI+ED LR+LR FRF + N S+ + +IK + Sbjct: 129 IDLYGGQKDIENKIINFVGNVEERIIEDPLRVLRAFRFMSRL---NFSLSENTIEAIKNQ 185 Query: 195 KG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 K LK + ERI E +KLL N N + M + G+ + Sbjct: 186 KSLLKNIPEERINMEFSKLLLGDNIKNTLTLMKDTGVLE 224 >gi|307289102|ref|ZP_07569058.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0109] gi|306499811|gb|EFM69172.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0109] gi|315164011|gb|EFU08028.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1302] Length = 406 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 ++TI+ +G+ H R ED LR++R RF + K I+ L A + L+ +S ERI Sbjct: 142 TSQTIRAVGNPHERFHEDALRMMRGLRFASQLDFK-IEEKTLAAIAEFHPLLEKISVERI 200 Query: 206 WSEINKLL 213 E K+L Sbjct: 201 TIEFVKML 208 >gi|149036852|gb|EDL91470.1| rCG56075 [Rattus norvegicus] Length = 182 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 6/158 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT- 73 L ++ L K + I GGAVRD L + QD+D ATT P + +F ++I Sbjct: 16 LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTEMKEMFQAAGIRMINNK 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TI+ G Sbjct: 76 GEKHGTITARLHEENFEVTTLRIDVSTDGRHAEVEFTTDWQKDAERRDLTISF-----DG 130 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + DY G DL+N+ ++F+G A RI EDYLRILR+F Sbjct: 131 TLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYF 168 >gi|167759626|ref|ZP_02431753.1| hypothetical protein CLOSCI_01984 [Clostridium scindens ATCC 35704] gi|167662752|gb|EDS06882.1| hypothetical protein CLOSCI_01984 [Clostridium scindens ATCC 35704] Length = 447 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/189 (39%), Positives = 108/189 (57%), Gaps = 7/189 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG +RDS++ +D DI T+ +P+ +F KT T I +GTI ++ K+ F++ Sbjct: 34 VGGCIRDSILGREPEDWDITTSAMPEETKALFDKT----FDTGIQHGTITVLLEKEGFEV 89 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FTR+ + D LRRDFTINA+ ++ ++D GGL DL Sbjct: 90 TTYRIDGKYEDSRHPKEVTFTRNLREDLLRRDFTINAMAYNETDGLVDIFGGLEDLEAGM 149 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LRILR RF A G +I+ D + L+ +S+ERI E+ Sbjct: 150 IRCVGTAKERFKEDALRILRGVRFAAQLG-FDIEEDTRQGMKELAWTLQNISAERIQVEL 208 Query: 210 NKLLEAKNP 218 K++ +K P Sbjct: 209 VKMITSKRP 217 >gi|225386499|ref|ZP_03756263.1| hypothetical protein CLOSTASPAR_00246 [Clostridium asparagiforme DSM 15981] gi|225047418|gb|EEG57664.1| hypothetical protein CLOSTASPAR_00246 [Clostridium asparagiforme DSM 15981] Length = 401 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 126/230 (54%), Gaps = 21/230 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ LN+ ++ IVGG VRD L+N D DI T+ LP +V +F +T + T I + Sbjct: 12 IIGQLNEHGYEAYIVGGCVRDMLLNREPGDWDITTSALPGQVKELFHRT----VDTGIQH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K+ +++TT R D DGR+ K V FT + D RRDFTINA+ ++ Sbjct: 68 GTVTVMVGKEGYEVTTFRVDGEYEDGRHPKSVSFTPNLTEDLKRRDFTINAMAYNKATGF 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASI 191 +D GG+ DLR I+ +G+ R ED LRILR RF A G E+ ++ ++A Sbjct: 128 VDEFGGVEDLRRGIIRCVGEPMDRFTEDALRILRAIRFSAQLGFEIEERTQEAIRVIAPN 187 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLN-AIVH-----MYNGGIFKEIF 235 AK +S ER+ E+ KLL + +P A+V+ Y G F EI+ Sbjct: 188 LAK-----VSKERVQVELTKLLCSAHPERIALVYETGISRYVSGTFDEIY 232 >gi|229822936|ref|ZP_04449006.1| hypothetical protein GCWU000282_00228 [Catonella morbi ATCC 51271] gi|229787749|gb|EEP23863.1| hypothetical protein GCWU000282_00228 [Catonella morbi ATCC 51271] Length = 416 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 15/194 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRD+L+ + DIDIAT+ PD + IF T +GTI ++ +K+ Sbjct: 28 EAYFVGGCVRDALLGKEIHDIDIATSATPDEIQGIFPVT----FDVGKKHGTIVVVYKKE 83 Query: 88 YFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 ++ITT R T+G Y+ +V F R+ + D+LRRDFTINAL D+ G+V DY GG Sbjct: 84 NYEITTFR----TEGTYSDRRRPDQVNFVRNLREDTLRRDFTINALALDRLGRVYDYHGG 139 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL+ I+ +G A R ED LR++R RF + G + I+S A + L +S Sbjct: 140 EQDLQAGIIRAVGTAMERFDEDALRMMRALRFASQLGFE-IESQTFEAIGQLAPNLSYVS 198 Query: 202 SERIWSEINKLLEA 215 ERI E++KL++ Sbjct: 199 IERIRIELSKLMQG 212 >gi|325109887|ref|YP_004270955.1| polynucleotide adenylyltransferase region [Planctomyces brasiliensis DSM 5305] gi|324970155|gb|ADY60933.1| Polynucleotide adenylyltransferase region [Planctomyces brasiliensis DSM 5305] Length = 426 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 105/406 (25%), Positives = 187/406 (46%), Gaps = 29/406 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY--F 89 GG VRD L+ D D+AT PD+V ++F R + + S+G I ++ K+ Sbjct: 26 AGGCVRDFLLEGEPADFDVATDARPDQVRKLFG--RRRTLAVGESFGVIIVLGPKEAGQV 83 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRN 147 ++ T R+D +DGR + + D+LRRDFTIN ++ D + +IDYVGG +DL Sbjct: 84 EVATFRTDATYSDGRRPDAITFSTPQEDALRRDFTINGMFYDPLAEELIDYVGGQSDLEA 143 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ IGD H RI ED LR+LR RF A + + +D ++A ++++S ERI Sbjct: 144 RIVRAIGDPHARIEEDKLRMLRALRFAARF-DFVLDEATMLAIRTHGPQIEVVSQERITD 202 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-----QLSQVIEAEQVFEWKIDS 262 E K+L + + + G+ + ++ + D ++++ ++V +++ + Sbjct: 203 EFRKMLRHPSRARGMEMIAESGLLTHVLPEIIDCWGDGNYATNTLEMLQLQRVAGFQLAA 262 Query: 263 LLRFIVL-----ISWQDK---KSILSMAKKFSLPREIR---YFLISFFNCNFNQKTLSIP 311 + F L QD+ + + K+ L + +L + N + L++ Sbjct: 263 AIAFRCLSERVATGPQDRHRASELDVLGKRLRLSNQECDDISWLAGHYRQIQNAEALTLA 322 Query: 312 EIKKLFYLYGDKVMI--AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 E+K L +I A+L + H ++ Q +++ PL LTG D Sbjct: 323 ELKPLLADSRRDQLIEFARLADVVERHAPRGATYCEQYLQQTPQELLD-PPPL--LTGGD 379 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 ++ G PGK +L + +N + S E L +L+ S Sbjct: 380 LIAMGQRPGKHFATVLAEVRAAQLNERLE-SPEQAMALANELLKQS 424 >gi|29840677|ref|NP_829783.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC] gi|29835027|gb|AAP05661.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC] Length = 410 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 124/237 (52%), Gaps = 10/237 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L N G ++ VGG VRD LM ++DIDIAT P V IF+ T + ++ Sbjct: 13 LLKLRNSGY-QAYFVGGCVRDMLMGKPIEDIDIATNAPPVIVSTIFTDT----LSLGAAF 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 G I + + F++ T RSD DGR+ + V K D+LRRDFTIN +Y D + K+ Sbjct: 68 GIIVVKENNRLFEVATFRSDENYEDGRHPERVVFSSMKEDALRRDFTINGMYYDPFEEKL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D V G DL R ++ IG R ED LRILR RF + G ++D A IK Sbjct: 128 FDLVEGRRDLEKRVVRAIGHPKLRFSEDKLRILRAVRFSSSLG-FSLDPATERAIIKEAP 186 Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L+ KNP A+ + I IF +++++ L IE Sbjct: 187 TLVNSVSPERIWQELRKMLK-KNPYEALSLLIKLKIITVIFPELRDVPPSLLRVNIE 242 >gi|24214670|ref|NP_712151.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira interrogans serovar Lai str. 56601] gi|45657793|ref|YP_001879.1| polynucleotide adenyltransferase-like protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195655|gb|AAN49169.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira interrogans serovar Lai str. 56601] gi|45601033|gb|AAS70516.1| polynucleotide adenyltransferase-like protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 432 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 9/226 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+++I ++ K + +VGG+VRD ++ ++ D+ T++LP++++ +F +T IP Sbjct: 19 EDILHITQIIRKEGGECYLVGGSVRDLALSKIPKEFDLTTSLLPEKILSLFKRT----IP 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + + ++ITT R D DGR ++V F D RRDFT+NAL D Sbjct: 75 TGIKHGTVTVLIQDRAYEITTFRKDADYLDGRRPEIVEFGVSLSEDLKRRDFTMNALAFD 134 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + K +ID GL D++N+ I+ IG+ R ED LR +R RF + G +++ + A Sbjct: 135 LETKALIDEHSGLLDIQNKIIRTIGNPIERFTEDGLRPIRAIRFVSSLG-FHLEPNTAKA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I K +S ER+ E+NK+L++KNP ++ GI E+F Sbjct: 194 IILCKNVTAKVSRERVHDELNKILKSKNPTPSLKLFKEFGIL-ELF 238 >gi|153005214|ref|YP_001379539.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152028787|gb|ABS26555.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. Fw109-5] Length = 434 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 134/252 (53%), Gaps = 21/252 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70 + ++++L L +S +VGGAVRD L++ + D D+AT LP++V +F K V Sbjct: 14 APVLHVLRRLGDAGYRSWLVGGAVRDLLLHRARDANDFDVATPALPEQVAALFPK----V 69 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALY 128 IPT I +GT+ ++ + ++TT R + DGR + V F D +AD RRDFTINAL Sbjct: 70 IPTGIEHGTVTVLVGGEPIEVTTFRGEGEYKDGRRPESVTFHEDLEADLARRDFTINALA 129 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D G++ D GG DLR R I+ +GD R ED LR +R RF A G ++D Sbjct: 130 LDPLAGELRDPFGGEADLRRRLIRAVGDPVARFGEDGLRPMRAVRFAAQLG-YSLDP--- 185 Query: 188 VASIKAKKG----LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---QE 240 A+ +A +G ++ +S ERI E+ +L+ A + A+ M G+ + + E Sbjct: 186 -ATEEAIRGALPIVRKVSRERIADELTRLVVAPDAPRAVDLMRTTGLLATVLPALAGRPE 244 Query: 241 ISLDQLSQVIEA 252 LD V+ A Sbjct: 245 RELDHAVAVLAA 256 >gi|195978215|ref|YP_002123459.1| tRNA CCA-pyrophosphorylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974920|gb|ACG62446.1| CCA-adding enzyme, tRNA nucleotidyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 398 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 139/259 (53%), Gaps = 16/259 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRDSL+N + D+DIA + P+ IF +T I I +GT+ ++ Sbjct: 21 EAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIFPRT----IDVGIEHGTVLVLENGS 76 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G++ID GL DL Sbjct: 77 EYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEDGQIIDIFNGLEDL 136 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG----LKILS 201 +++ ++ +G R ED LRI+R FRF A ++D D + +A K L+ +S Sbjct: 137 KHKLLRAVGRPQERFEEDALRIMRGFRFAA-----SLDFDIEAETFEAMKSHAPLLEKIS 191 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEWKI 260 ER + E++KLL A I+ M F + L +E +L + + + A+ VF+ Sbjct: 192 VERSFIELDKLLMAPKWRKGILAMIACQAFNYLPGLVGKEEALQKYLKTLAADYVFQDNH 251 Query: 261 DSLLRFIVLISWQDKKSIL 279 + +V++ K+ L Sbjct: 252 QAWAYLLVMLELDQPKAFL 270 >gi|146318483|ref|YP_001198195.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 05ZYH33] gi|146320676|ref|YP_001200387.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 98HAH33] gi|253751610|ref|YP_003024751.1| CCA-adding enzyme [Streptococcus suis SC84] gi|253753512|ref|YP_003026653.1| CCA-adding enzyme [Streptococcus suis P1/7] gi|253755663|ref|YP_003028803.1| CCA-adding enzyme [Streptococcus suis BM407] gi|166233886|sp|A4W0U8|CCA_STRS2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233888|sp|A4VUK6|CCA_STRSY RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|145689289|gb|ABP89795.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus suis 05ZYH33] gi|145691482|gb|ABP91987.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus suis 98HAH33] gi|251815899|emb|CAZ51513.1| CCA-adding enzyme [Streptococcus suis SC84] gi|251818127|emb|CAZ55921.1| CCA-adding enzyme [Streptococcus suis BM407] gi|251819758|emb|CAR45646.1| CCA-adding enzyme [Streptococcus suis P1/7] gi|292558265|gb|ADE31266.1| Polynucleotide adenylyltransferase [Streptococcus suis GZ1] gi|319758048|gb|ADV69990.1| tRNA CCA-pyrophosphorylase [Streptococcus suis JS14] Length = 403 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 116/204 (56%), Gaps = 7/204 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+++ + D+DIAT+ P +IFS+T I Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDAILGRPIHDVDIATSSYPQETKQIFSRT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ KK ++ITT R++ + R ++V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +++D G+ DL NRT++ +G R ED LRI+R FRF A + I+ A + Sbjct: 128 EAQIVDLFDGMTDLENRTLRAVGIPAERFNEDALRIMRGFRFAATL-DFEIEPTTFEAMV 186 Query: 192 KAKKGLKILSSERIWSEINKLLEA 215 + L+ +S ER + E +KLL A Sbjct: 187 QTAPLLEKISVERSFIEFDKLLMA 210 >gi|251777768|ref|ZP_04820688.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082083|gb|EES47973.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 432 Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 114/403 (28%), Positives = 196/403 (48%), Gaps = 48/403 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL L ++ IVGG VRDS++N +D DI T P+ V+++F+K VI T + + Sbjct: 14 ILETLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVVKLFNK----VILTGVKH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT R D D R+ K V F + K D RRDFTINA+ +++ + Sbjct: 70 GTVTVLINSEGYEVTTYRMDGKYEDSRHPKQVKFVSNLKEDLARRDFTINAMAYNKEDGL 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 IDY G++DL+ + IK +G++ R ED LR+LR RF + + +I ++ L + + Sbjct: 130 IDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQL-DFSISNETLNSIKNLRY 188 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------------QEI 241 +K +S ERI E NK+L + I + G+ + IF ++ + Sbjct: 189 NIKNISKERIREEFNKILFSSTK--GIDILIETGLIEHIFPEIIKFCDFKADNMYYNDNL 246 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY-------- 293 + + E E K+ L ++ I+ +D + + K+F +E +Y Sbjct: 247 YAHTVRAIEEIESSLHLKLTMLFYNLIKINNEDIEYTILQVKEF--LKEFKYDNNTVNKV 304 Query: 294 -FLISFFNCNFNQKTLSIPEIKKLFY--LYGDKVMIAKLKIFLALHYNNLTHQDT-CFIL 349 LI + N + N K L I +I L L+ D + + + +I L N L ++ +L Sbjct: 305 TTLILYMNNDLNTK-LEIKQILNLINLDLFEDLLKVKEAEI---LSQNPLYKEERLSHLL 360 Query: 350 QVLSDI--IHWKKPLFPL-----TGDDVVKYGIPPGKKVGNIL 385 + ++ I K F L G D++ G+ GK +G +L Sbjct: 361 SIRENLKEILLNKECFNLKDLSINGKDLINLGLEKGKNIGEML 403 >gi|226324134|ref|ZP_03799652.1| hypothetical protein COPCOM_01912 [Coprococcus comes ATCC 27758] gi|225207683|gb|EEG90037.1| hypothetical protein COPCOM_01912 [Coprococcus comes ATCC 27758] Length = 450 Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 120/224 (53%), Gaps = 16/224 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L K ++ VGG VRDS + D DI T+ P+ +F++T T I + Sbjct: 14 IITTLQKHGFEAYAVGGCVRDSFLGRVPGDWDITTSAAPEETKSLFART----FDTGIEH 69 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINALYADQ 131 GTI ++ + F++TT R DG+Y +KV FTR D LRRDFTINA+ ++ Sbjct: 70 GTITVLLNGEGFEVTTYR----IDGKYEDNRHPSKVQFTRSLSEDLLRRDFTINAMAYNE 125 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 Q ++D G+ DL+ I+ +G+A R ED LRILR RF A G + I+ + A Sbjct: 126 QDGLVDLFHGMEDLKKGVIRCVGNAEARFSEDALRILRAIRFSAQLGFE-IEKETRQAIR 184 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K L +S+ERI +E+ KLL + +P I Y GI K I Sbjct: 185 KLAPNLSYISAERIQTELVKLLISDHP-EKIQDAYELGITKVIL 227 >gi|307706183|ref|ZP_07643001.1| RNA nucleotidyltransferase [Streptococcus mitis SK321] gi|307618443|gb|EFN97592.1| RNA nucleotidyltransferase [Streptococcus mitis SK321] Length = 394 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 111/403 (27%), Positives = 190/403 (47%), Gaps = 27/403 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL+DL + ++ +G A R ED LRI+R FRF A G ++S+ A Sbjct: 125 EIIDLFHGLDDLGKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELESETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L+ +S ER + E +KLL A + M + +L S D+L+++ E E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMAASQDKLNRLFELE 241 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 F ++ S + L+ D ++ K + R+ Q L+I + Sbjct: 242 TDFTFE-SSEQAWAALLWALDIENAQPFLKAWKTSRQF---------AKQVQDLLTILAL 291 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPLFPLTG 367 ++ L K + + L L NL Q QV+++ IH KK + G Sbjct: 292 REKGEL--SKRDCYRFDLDLLLQAENLRQAQGKPVNPQVITETYQSLTIHDKKEIQINGG 349 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +YG PG +G IL + ++ + ++ +H LR+ Sbjct: 350 ILIKEYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392 >gi|229826592|ref|ZP_04452661.1| hypothetical protein GCWU000182_01967 [Abiotrophia defectiva ATCC 49176] gi|229789462|gb|EEP25576.1| hypothetical protein GCWU000182_01967 [Abiotrophia defectiva ATCC 49176] Length = 403 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 113/394 (28%), Positives = 174/394 (44%), Gaps = 56/394 (14%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+S L K ++ VGG VRDS+++ +D DI T+ P+ V ++F T I T + + Sbjct: 12 IISRLEKNGYEAYAVGGCVRDSILDRIPEDWDITTSAKPEEVKKLFPAT----IDTGLQH 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K+ +++TT R D +DGR+ +V FT D RRDFTINA+ + + Sbjct: 68 GTVTVVIEKEGYEVTTFRLDGDYSDGRHPDRVAFTSSLTEDLKRRDFTINAMAYSEITGL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASI 191 ID G DL + I+ +GDA R ED LR+LR RF EK D A Sbjct: 128 IDRFDGEKDLEDGIIRAVGDAEERFSEDALRMLRAIRFAGQLNFDIAEKTFD-----AIK 182 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK-------------EIFLDV 238 K + +S ERI E+ KLL + NP I +Y GIF+ EI+ + Sbjct: 183 KLSPNISKVSVERIAKELEKLLLSGNP-EYIGLVYEAGIFEVIAPEIAALFDKGEIYNSI 241 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + +S + E Q+ R + + S + K+F L + + Sbjct: 242 KAVSCTSYPEKKELYQI---------RTALFLERLGADSAAKLLKRFKLDNDTINTVKKL 292 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMI-------AKLKIFLALHYNNLTHQDTCFILQV 351 + S E+++ G K+M AK + Y NL + C Sbjct: 293 IGLLQREVEASALEMRRTVKEAGHKIMPLLFEARRAKALTDSSKLYENLLVRGEC----- 347 Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 +DI K + G D+++ GIP G +G L Sbjct: 348 -TDIAGLK-----VNGKDLMEAGIPKGIMIGQTL 375 >gi|28210893|ref|NP_781837.1| poly(A) polymerase [Clostridium tetani E88] gi|28203332|gb|AAO35774.1| poly(A) polymerase [Clostridium tetani E88] Length = 451 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 114/202 (56%), Gaps = 3/202 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ +L + ++ VGG +RDSL+N D DI T ++V++IF + V+ T I Y Sbjct: 17 IIDILEEHGYEAYAVGGCIRDSLLNRIPHDWDITTDAKGEQVIKIFKSLDFNVVKTGIRY 76 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ +I ++ITT R D DGR+ KV FT + K D RRDFT+NA+ + + + Sbjct: 77 GTVTLIINSIGYEITTYRIDGNYLDGRHPEKVEFTNNLKEDLSRRDFTVNAMAYNHKKGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 DY G DL+N+ IK +GD R ED LR++R RF A + NI+ + A K Sbjct: 137 ADYYNGREDLKNKIIKSVGDPLKRFSEDALRMIRGVRFSAQL-DFNIEENTKEAIKKLSS 195 Query: 196 GLKILSSERIWSEINKLLEAKN 217 +K +S ERI E NK+L + N Sbjct: 196 NIKNVSVERIREEFNKILLSSN 217 >gi|283779836|ref|YP_003370591.1| tRNA adenylyltransferase [Pirellula staleyi DSM 6068] gi|283438289|gb|ADB16731.1| tRNA adenylyltransferase [Pirellula staleyi DSM 6068] Length = 419 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 7/202 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I+++ L ++ GG VRD L+ +D D+AT+ LPD V ++F R I Sbjct: 14 ISVVRQLRAAGYQALWAGGCVRDQLLGQRPKDYDVATSALPDEVRKLFGHKRTLAI--GA 71 Query: 76 SYGTIKIICRKKY--FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQ- 131 ++G I ++ ++ D+ T R+D +DGR+ + + D+ RRDFTIN L+ D Sbjct: 72 AFGVITVLGPREAGQLDVATFRTDATYSDGRHPDAITFSTPEHDAQRRDFTINGLFFDPI 131 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +VIDYVGG DL R ++ I D RI ED LR+LR RF A G +I++ L A Sbjct: 132 EERVIDYVGGEADLAARVVRAIRDPAERIEEDKLRMLRAVRFAARLG-FSIEAQTLAAIE 190 Query: 192 KAKKGLKILSSERIWSEINKLL 213 + L+++S+ERI +E+ K+L Sbjct: 191 QRADQLQVVSAERIAAEMEKIL 212 >gi|153812524|ref|ZP_01965192.1| hypothetical protein RUMOBE_02923 [Ruminococcus obeum ATCC 29174] gi|149831449|gb|EDM86537.1| hypothetical protein RUMOBE_02923 [Ruminococcus obeum ATCC 29174] Length = 443 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 18/245 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S+ IL +L + ++ +VGG VRDS++ + D DI T+ P +V +F +T + Sbjct: 7 SNAEKILHILEENGYEAYVVGGCVRDSILGRNPNDWDITTSASPQQVKELFQRT----VD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ K+ +++TT R D DGR+ K V+FT + D RRDFTINA+ Sbjct: 63 TGLQHGTVTVLMDKEGYEVTTYRVDGDYEDGRHPKQVMFTSSLEEDLKRRDFTINAMAYH 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D G+ D+ ++ ++ +GD R ED LRILR RF A G + A Sbjct: 123 PERGLVDLFHGMEDMEHKIVRCVGDPMERFHEDALRILRAVRFSAQLG--FTIEEKTKAG 180 Query: 191 IKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I+A LK +S+ERI +E+ KLL + +P + + Y GI +E L + Sbjct: 181 IQALAPNLKCVSAERIQTELVKLLVSPHP-DYLRVAYETGITREF--------LPEFDAC 231 Query: 250 IEAEQ 254 +E EQ Sbjct: 232 METEQ 236 >gi|319938896|ref|ZP_08013260.1| CCA-adding enzyme [Streptococcus anginosus 1_2_62CV] gi|319811946|gb|EFW08212.1| CCA-adding enzyme [Streptococcus anginosus 1_2_62CV] Length = 399 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 109/190 (57%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIA++ P+ RIF +T I I +GT+ ++ Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIASSSYPEETKRIFERT----IDVGIEHGTVLVLEDNH 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R K D RRDFTINAL D+ VID GL DL Sbjct: 82 EYEVTTFRTEDIYVDYRRPSHVTFVRSLKEDLKRRDFTINALALDEARNVIDLFEGLADL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G R ED LRI+R FRF A G ++D+D A L+ +S ER Sbjct: 142 ENQILRAVGIPSERFNEDALRIMRGFRFQAALG-FDLDTDTFQAMKLCAPLLEKISVERT 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLTA 210 >gi|301300784|ref|ZP_07206968.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851634|gb|EFK79334.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 404 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/203 (36%), Positives = 113/203 (55%), Gaps = 7/203 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD+L+ L + D+DIA++ P+ + +IFSKT + T + +GT+ ++ ++I Sbjct: 30 VGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFSKT----VDTGVEHGTVMVLDHGTGYEI 85 Query: 92 TTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ R KV F R + D RRD TINAL D +GK+ID GL DL+N Sbjct: 86 TTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMDDKGKIIDLFDGLKDLKNGI 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G+ R ED LR++R RF + K ++ D A K L+ ++ ERI E Sbjct: 146 IRAVGNPEERFHEDALRMMRAVRFGSQLDFK-VELDTFNAIKKNSHLLEKIAIERIHVEW 204 Query: 210 NKLLEAKNPLNAIVHMYNGGIFK 232 KLL K P + + ++K Sbjct: 205 VKLLLGKKPKQGLQEFLDTELYK 227 >gi|329929733|ref|ZP_08283409.1| putative tRNA adenylyltransferase [Paenibacillus sp. HGF5] gi|328935711|gb|EGG32172.1| putative tRNA adenylyltransferase [Paenibacillus sp. HGF5] Length = 432 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 101/347 (29%), Positives = 159/347 (45%), Gaps = 25/347 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I +LL G + + VGG VRD M V D+DI T+ LP+ +F K VIPT I + Sbjct: 25 IRTLLRHGHE-AYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFPK----VIPTGIKH 79 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R + D R+ +V F + K D RRDFT+NA+ G Sbjct: 80 GTVTVLMEGQSFEVTTYRVESGYEDHRHPTEVAFVGEVKEDLRRRDFTMNAMARGIDGSW 139 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG D+ + I+ +GDA R ED LR++R RF + +G +I + + Sbjct: 140 VDPFGGREDIDRKVIRCVGDARLRFREDALRMVRCIRFASVFG-FSIALRTWRGILSERD 198 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L ++ ERI SE K+L +PL + G+ + + D+ + IEA + Sbjct: 199 TLGWIAMERIRSEFEKILAGPSPLRGLEMFVRSGLHSRMKAPFPYTTHDR--KTIEAMER 256 Query: 256 FE-------WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 E W SLL I+ Q+ + +L + RE L+S Q Sbjct: 257 IEPDHAMIRW---SLLLLACGITAQEAEELLRSWTFSNKQRESIVKLLSLHESYLQQPNA 313 Query: 309 SIPEIKKLFYL-----YGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350 E +L ++ +G + L++ ALH+ + FI Q Sbjct: 314 GDAESSRLKWIGLVLAHGVEAAQGWLEMQTALHHTGASSAPLTFIRQ 360 >gi|225870622|ref|YP_002746569.1| CCA-adding enzyme [Streptococcus equi subsp. equi 4047] gi|225700026|emb|CAW94050.1| CCA-adding enzyme [Streptococcus equi subsp. equi 4047] Length = 404 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 139/259 (53%), Gaps = 16/259 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRDSL+N + D+DIA + P+ IF +T I I +GT+ ++ Sbjct: 27 EAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIFLRT----IDVGIEHGTVLVLENGS 82 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G+VID GL DL Sbjct: 83 EYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEDGQVIDIFNGLEDL 142 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG----LKILS 201 +++ ++ +G R ED LRI+R FRF A ++D D + +A K L+ +S Sbjct: 143 KHKLLRAVGRPQERFEEDALRIMRGFRFAA-----SLDFDIEAETFEAMKSHAPLLEKIS 197 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEWKI 260 ER + E++KLL A I+ M F + L +E +L + + + A+ VF+ Sbjct: 198 IERSFIELDKLLMAPKWRKGILAMVACQAFNYLPGLVGKEEALQKYLKTLAADYVFQDNH 257 Query: 261 DSLLRFIVLISWQDKKSIL 279 + +V++ K+ L Sbjct: 258 QAWAYLLVMLELDQPKAFL 276 >gi|227529198|ref|ZP_03959247.1| tRNA adenylyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350873|gb|EEJ41164.1| tRNA adenylyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 403 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 160/323 (49%), Gaps = 31/323 (9%) Query: 20 SLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L K ED ++ VGG VRD+++ S+ DIDIAT+ P + IF++T + T I Sbjct: 15 PVLQKIEDAGFEAYFVGGCVRDTILGDSIHDIDIATSAYPSEIKAIFNRT----VDTGIE 70 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ I+ ++ TT R++ R KV F R D RRDFTINAL + G+ Sbjct: 71 HGTVMILDHGTGYETTTFRTESGYQDFRRPDKVTFVRSLSEDLKRRDFTINALALKENGE 130 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 VID GL+DL++ IK +GD + R ED LR++R RF + + I ++ L + Sbjct: 131 VIDLFNGLDDLKHHLIKAVGDPNERFHEDALRMMRAVRFASKL-DFVIAAETLAGIKQNA 189 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLS-----Q 248 L+ ++ ERI E KLL +NP+ + G+++ L ++ L L Q Sbjct: 190 ALLEKIAVERIRVEFEKLLMGQNPVAGLNEFLQTGLYQYCPGLVGKQTELSGLLLLNNWQ 249 Query: 249 VIEAEQ-----VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-----REIRYFLISF 298 + AEQ V + +DS L SW+ +++ KK +P R + ++F Sbjct: 250 LRNAEQAWAVIVTQLGLDSRDASKFLRSWKTSNELITNVKKM-IPVIQGLRSKKLSPLTF 308 Query: 299 FNCNFNQKTLSIPEIKKLFYLYG 321 F N ++ + ++ LYG Sbjct: 309 FTAGRN----AVQDANQVAKLYG 327 >gi|283770530|ref|ZP_06343422.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus H19] gi|283460677|gb|EFC07767.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus H19] Length = 411 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMCTQMADIKFLSIERIVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEESFNHL 227 >gi|227500200|ref|ZP_03930269.1| possible tRNA adenylyltransferase [Anaerococcus tetradius ATCC 35098] gi|227217722|gb|EEI83026.1| possible tRNA adenylyltransferase [Anaerococcus tetradius ATCC 35098] Length = 451 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 118/398 (29%), Positives = 184/398 (46%), Gaps = 53/398 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDSL++L + D+DI + P+ + ++FS + K+I +GTIKII F++ Sbjct: 27 VGGCVRDSLLDLEISDVDITSNARPEEIEKVFSSS--KLIDIGKKFGTIKIIDFGYEFEV 84 Query: 92 TTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ D R+ K+ F + D RRDFTINA+ D+ G++ID GG DL + Sbjct: 85 TTFRAESAYRDRRHPEKISFADNIYDDLKRRDFTINAMAFDR-GELIDPFGGRLDLEKKI 143 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK-GLKILSSERIWSE 208 I+ +GDA RI ED LR +R RF + G +S L+ +I+AK + ++S ERI E Sbjct: 144 IRAVGDAKERIDEDLLRSMRAVRFASRLGFTIEES--LMEAIRAKACEINLISKERIGEE 201 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIF-----------------LDVQEISLDQLSQ--- 248 ++K+L + P I + GI EI DV E SL L+ Sbjct: 202 LSKILISDRPSYGIRLLDVAGILSEILPELYKTKGFDQHSSYHQYDVYEHSLHVLANTSK 261 Query: 249 --VIEAEQVFE--WKIDSLL-------RFIVLISWQD---KKSILSMAKKFSLPREIRYF 294 V ++ KID+ RF D KK + ++ + Sbjct: 262 DLVTRFAALYHDVGKIDTFFLDERGEGRFFGHQKLSDQMLKKRLRALKFSNKFIEDASML 321 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC-------F 347 + +C+ + S I+KL G+ V + +L H DT Sbjct: 322 VARHMDCS---NSYSKKSIRKLLRRMGE-VNLRRLFDLQRADIRATNHPDTSNIDLGEEL 377 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 + +VL+D + K+ + G D++ G P GK +G +L Sbjct: 378 LCEVLADDLPKKRSDLAINGSDLLALGYPQGKIIGELL 415 >gi|282916724|ref|ZP_06324482.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus D139] gi|282319211|gb|EFB49563.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus D139] Length = 411 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMCTQMADIKFLSIERIVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEESFNHL 227 >gi|56808914|ref|ZP_00366623.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus pyogenes M49 591] Length = 402 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 110/385 (28%), Positives = 190/385 (49%), Gaps = 40/385 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I Sbjct: 14 LPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL+ + ++ +G A R ED LRI+R FRF A ++D D + +A Sbjct: 130 QVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEATTFEA 184 Query: 194 KKG----LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248 + L+ +S ER ++E +KLL A + I M + + L QE L+ L Sbjct: 185 MRSHSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIV 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ F + ++ ++ +D KS L K + + LI+ + +++ Sbjct: 245 SLKDNFTFSDHHQAWTYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIR-QERSF 303 Query: 309 SIPEIKKLFYLYGDKV--MIAKLKIFLAL-----HYNNLTHQDTCFILQVLSDIIHWKKP 361 +I Y YG K+ ++ L+ +L H N L D ++ DI+ Sbjct: 304 EKLDI----YQYGKKMASLVEDLRKAQSLSVDMDHINTL---DQALVIHDKHDIV----- 351 Query: 362 LFPLTGDDVVK-YGIPPGKKVGNIL 385 L G ++K +G+ PG ++G +L Sbjct: 352 ---LNGSHLIKDFGMKPGPQLGLML 373 >gi|302333068|gb|ADL23261.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus JKD6159] Length = 400 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRTQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGNNVEESFNHL 216 >gi|148380252|ref|YP_001254793.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC 3502] gi|153930928|ref|YP_001384558.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC 19397] gi|153936961|ref|YP_001388074.1| polyA polymerase family protein [Clostridium botulinum A str. Hall] gi|148289736|emb|CAL83842.1| Poly A polymerase family protein [Clostridium botulinum A str. ATCC 3502] gi|152926972|gb|ABS32472.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC 19397] gi|152932875|gb|ABS38374.1| polyA polymerase family protein [Clostridium botulinum A str. Hall] Length = 450 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 3/207 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R+ K V FT + + D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +S L K + Sbjct: 137 VDYFYGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFCMEESIKLNIR-KLSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 + +S ERI E+ K+L + P+ I Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGI 222 >gi|160941553|ref|ZP_02088885.1| hypothetical protein CLOBOL_06451 [Clostridium bolteae ATCC BAA-613] gi|158435518|gb|EDP13285.1| hypothetical protein CLOBOL_06451 [Clostridium bolteae ATCC BAA-613] Length = 442 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 111/412 (26%), Positives = 184/412 (44%), Gaps = 56/412 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I++ LN+ ++ +VGG VRD L+ D DI T+ LP++V +F +T + T I Sbjct: 17 EIINKLNEHGYEAYVVGGCVRDMLLGREPGDWDITTSALPEQVKEVFRRT----VDTGIQ 72 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ K+ +++TT R D +DGR+ V FT D D RRDFTINA+ + Sbjct: 73 HGTVTVMMGKEGYEVTTYRIDGEYSDGRHPNSVEFTPDLVEDLKRRDFTINAMAYNSHTG 132 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVAS 190 +D GG+ DL I+ +G+ R ED LRILR RF A G E+ ++ ++A Sbjct: 133 FVDKFGGVEDLEKGIIRCVGEPMDRFTEDALRILRAIRFSAQLGFSIEERTYEAIKVIAP 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI---FKEIF-----LDVQEIS 242 + +S ERI E+ KLL + +P + I +Y GI E F D + + Sbjct: 193 -----NMVHVSKERIQVELTKLLLSSHP-DYISLVYETGISPFVSEKFHGAYAADSGDWA 246 Query: 243 LDQLSQVIEAEQVFEWKI---------------------DSLLRFIVLISWQDKKSILSM 281 + + + A + W D+ R L+ WQ KK Sbjct: 247 VPSIPAGVPAVKHMRWAAFLRECSASQAAGILKDLKLDNDTSYRVRTLVEWQGKKVGAED 306 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 +K L + Q S I++ ++ L + + L + Sbjct: 307 GEKDCLKHGKEEGMKEI----AKQPEPSRASIRRAMSQMEPELFDDLLTLKMCLSEDASD 362 Query: 342 HQDTCFILQV--LSDIIHWKKPLFPL-----TGDDVVKYGIPPGKKVGNILV 386 +++ ++ QV L++ I + L +G D++ G+ PG++VGN L Sbjct: 363 DRESQWLCQVRDLTEEIRSNRDCISLKTLAVSGHDIMGAGVKPGREVGNTLA 414 >gi|94990240|ref|YP_598340.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10270] gi|166233883|sp|Q1JHE0|CCA_STRPD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|94543748|gb|ABF33796.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS10270] Length = 402 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 110/385 (28%), Positives = 190/385 (49%), Gaps = 40/385 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I Sbjct: 14 LPILTKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFNRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL+ + ++ +G A R ED LRI+R FRF A ++D D + +A Sbjct: 130 QVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEATTFEA 184 Query: 194 KKG----LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248 + L+ +S ER ++E +KLL A + I M + + L QE L+ L Sbjct: 185 MRSHSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIV 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ F + ++ ++ +D KS L K + + LI+ + +++ Sbjct: 245 SLKDNFTFSDHHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIR-QERSF 303 Query: 309 SIPEIKKLFYLYGDKV--MIAKLKIFLAL-----HYNNLTHQDTCFILQVLSDIIHWKKP 361 +I Y YG K+ ++ L+ +L H N L D ++ DI+ Sbjct: 304 EKLDI----YQYGKKMASLVEDLRKAQSLSVDMDHINTL---DQALVIHDKHDIV----- 351 Query: 362 LFPLTGDDVVK-YGIPPGKKVGNIL 385 L G ++K +G+ PG ++G +L Sbjct: 352 ---LNGSHLIKDFGMKPGPQLGLML 373 >gi|170755697|ref|YP_001781925.1| polyA polymerase family protein [Clostridium botulinum B1 str. Okra] gi|169120909|gb|ACA44745.1| polyA polymerase family protein [Clostridium botulinum B1 str. Okra] Length = 450 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 116/207 (56%), Gaps = 3/207 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R+ K V FT + + D RRD TINA+ + + + Sbjct: 77 GTVTILISSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +S L + + Sbjct: 137 VDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFHMEESIKLNIR-ELSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 + +S ERI E+ K+L + P+ I Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGI 222 >gi|326201312|ref|ZP_08191184.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium papyrosolvens DSM 2782] gi|325988880|gb|EGD49704.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium papyrosolvens DSM 2782] Length = 448 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 130/254 (51%), Gaps = 32/254 (12%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++++ LN+ ++ VGG VRDS++ + D DI T LP + ++F KT T I Sbjct: 15 HVINKLNEAGYEAYFVGGCVRDSILCKAPYDWDITTNALPADIKQLFDKT----YDTGIK 70 Query: 77 YGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + ++TT R D R KV FT K D RRDFTINA+ + Sbjct: 71 HGTVTVLSGEMSLEVTTYRIDGDYKDFRRPEKVEFTSSLKEDLARRDFTINAMAYHPEHG 130 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--------EKNIDSDG 186 ++D+ GGL DL+ R IK +GD R ED LR+LR RF A G E ++ Sbjct: 131 LVDFFGGLKDLKKRVIKAVGDPKQRFREDALRMLRAIRFSAQLGFSIEEATFEAIKNNSA 190 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L+A+I SSER+ E+NK L +++PL+ +++ GI I L + Sbjct: 191 LIANI---------SSERVRDELNKTLVSQHPLH-FNYLHQTGILPYI--------LPEF 232 Query: 247 SQVIEAEQVFEWKI 260 + + EQV + + Sbjct: 233 ERCYKTEQVNPYHV 246 >gi|257425523|ref|ZP_05601948.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 55/2053] gi|257428182|ref|ZP_05604580.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 65-1322] gi|257430812|ref|ZP_05607194.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 68-397] gi|257433570|ref|ZP_05609928.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus E1410] gi|257436412|ref|ZP_05612459.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus M876] gi|282904040|ref|ZP_06311928.1| polyA polymerase [Staphylococcus aureus subsp. aureus C160] gi|282905805|ref|ZP_06313660.1| tRNA nucleotidyltransferase CCA-adding enzyme [Staphylococcus aureus subsp. aureus Btn1260] gi|282908775|ref|ZP_06316593.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911036|ref|ZP_06318838.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914248|ref|ZP_06322035.1| polyA polymerase [Staphylococcus aureus subsp. aureus M899] gi|282919171|ref|ZP_06326906.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282924355|ref|ZP_06332029.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus subsp. aureus C101] gi|283958222|ref|ZP_06375673.1| polyA polymerase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501274|ref|ZP_06667125.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus 58-424] gi|293510235|ref|ZP_06668943.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus subsp. aureus M809] gi|293526830|ref|ZP_06671514.1| polyA polymerase [Staphylococcus aureus subsp. aureus M1015] gi|297591063|ref|ZP_06949701.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|257271980|gb|EEV04118.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 55/2053] gi|257275023|gb|EEV06510.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 65-1322] gi|257278940|gb|EEV09559.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 68-397] gi|257281663|gb|EEV11800.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus E1410] gi|257284694|gb|EEV14814.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus M876] gi|282313742|gb|EFB44135.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus subsp. aureus C101] gi|282316981|gb|EFB47355.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282322316|gb|EFB52640.1| polyA polymerase [Staphylococcus aureus subsp. aureus M899] gi|282324731|gb|EFB55041.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327039|gb|EFB57334.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331097|gb|EFB60611.1| tRNA nucleotidyltransferase CCA-adding enzyme [Staphylococcus aureus subsp. aureus Btn1260] gi|282595658|gb|EFC00622.1| polyA polymerase [Staphylococcus aureus subsp. aureus C160] gi|283790371|gb|EFC29188.1| polyA polymerase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920388|gb|EFD97452.1| polyA polymerase [Staphylococcus aureus subsp. aureus M1015] gi|291096279|gb|EFE26540.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus 58-424] gi|291467179|gb|EFF09697.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus subsp. aureus M809] gi|297575949|gb|EFH94665.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438138|gb|ADQ77209.1| polyA polymerase family protein [Staphylococcus aureus subsp. aureus TCH60] Length = 411 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTANKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRTQMADIKFLSIERIVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEKSFNHL 227 >gi|49483646|ref|YP_040870.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus MRSA252] gi|295427967|ref|ZP_06820599.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|73619857|sp|Q6GGV2|CCA_STAAR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|49241775|emb|CAG40466.1| poly A polymerase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|295128325|gb|EFG57959.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315195355|gb|EFU25742.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus CGS00] Length = 400 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTANKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRTQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEKSFNHL 216 >gi|321311714|ref|YP_004204001.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis BSn5] gi|320017988|gb|ADV92974.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis BSn5] Length = 397 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 9 LPVLRILIEAGHQAYFVGGAVRDSYMKRAIGDVDIATDAAPDQVERLFQRT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ + +++TT R SD + R ++V F + D RRD TINA+ G Sbjct: 65 EHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTADG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 KV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K Sbjct: 125 KVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSPETEEAIAKE 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K L +S ER E KLL+ + A+ + ++KE+ Sbjct: 184 KSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYKEL 224 >gi|299143658|ref|ZP_07036738.1| polyA polymerase family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518143|gb|EFI41882.1| polyA polymerase family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 440 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 125/440 (28%), Positives = 204/440 (46%), Gaps = 52/440 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++++ IL++LN IVGG++RD L++ D DIAT P + IF Y Sbjct: 3 TEILEILNILNMRGHLGYIVGGSLRDMLLDRIPFDFDIATDAKPYEIEEIFED--YLFYS 60 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RY-AKVVFTRDWKADSLRRDFTINALYAD 130 YGTI I + ++TT R + I + RY +V FT + + D RRDFTINA+ D Sbjct: 61 IGKKYGTITIKYKDYIVELTTFRKEGIYENHRYPTEVFFTENIEEDLKRRDFTINAMAMD 120 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +ID G++D+++R I+ +G+A RI ED LRILR RF K +D D A Sbjct: 121 GNGNIIDLYSGISDIKSRVIRTVGNADDRICEDALRILRAIRFAGTLDFK-LDCDLKDAI 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQ---- 245 IK + L +S ERI SE NK+L ++ P ++ M + + I+ + + +Q Sbjct: 180 IKNRSLLNNISKERIASEFNKILLSEMPSKSLKLMADTKVLDIIYPKLYNTVGYNQKTPY 239 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISW--QDKKSI--------LSMAKKFS 286 L V + FE ++ +L I S DK I L Sbjct: 240 HNKTLFEHLLCVVDNVPKNFELRLAALFHDIAKPSTLSVDKNGIGHFYGHAELGAKMAEE 299 Query: 287 LPREIRY---------FLISF---FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 + RE RY LI + + N K L +I+K+ G + ++ ++ +A Sbjct: 300 ILRENRYSNSTIKKVSTLILYHMKVHDNMTDKALR-RQIRKV----GAENILELYELMIA 354 Query: 335 LHYNNLTHQDTCFILQVLSDIIHW------KKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + +T++DT F+L + I K+ + G D++ G GK +G IL + Sbjct: 355 DRFCTMTNRDTKFLLDRKNRITELLKESTSKEKFLAVNGRDIMTLGFKEGKIIGEILEYI 414 Query: 389 KQEWINSSFQLSQEDLHHLL 408 + ++ ++E+L ++ Sbjct: 415 TEVVLDDPSLNNREELEKII 434 >gi|256846258|ref|ZP_05551715.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_36A2] gi|256718027|gb|EEU31583.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_36A2] Length = 451 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/233 (39%), Positives = 128/233 (54%), Gaps = 15/233 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKVIPTS 74 I IL+ LNK K IVGGA+RD L+ L +D+D TT LP R ++ +FS+ Y T Sbjct: 14 IKILNKLNKY-GKGYIVGGAIRDILLGLKPKDVDF-TTNLPYRTLKTLFSE--YTPKETG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT--DG-----RYAKVVFTRDWKADSLRRDFTINAL 127 S+G ++I ++I R D DG KV F D + D RRDFTINA+ Sbjct: 70 KSFGVLRIRIDNTDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAM 129 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +Q+ +ID G D+ NR I F+G A RI+ED LR+LR FRF + K S+ Sbjct: 130 AYNQKEGIIDLYNGQKDIENRIINFVGKAEERIIEDPLRVLRAFRFMSRL--KFSLSENT 187 Query: 188 VASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 V +IK +K LK +S ERI E +KLL +N N + M + G+ + I +++ Sbjct: 188 VEAIKKQKELLKNISEERITMEFSKLLLGENIKNTLTLMKDMGVLELIIPELK 240 >gi|313890589|ref|ZP_07824217.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121106|gb|EFR44217.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pseudoporcinus SPIN 20026] Length = 403 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF++T + I Sbjct: 14 LPILKKIKEAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKAIFTRT----VDLGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLEGGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID GL+DL++R ++ +G A R ED LRI+R FRF A + ++ L A + Sbjct: 130 VIIDKFSGLDDLKSRRLRAVGKAQDRFEEDALRIMRGFRFAATL-DFTVEEKTLQAMAEQ 188 Query: 194 KKGLKILSSERIWSEINKLL 213 L +S ERI+ E +KLL Sbjct: 189 AHLLTKISVERIFIEFDKLL 208 >gi|148992554|ref|ZP_01822222.1| polyA polymerase family protein [Streptococcus pneumoniae SP9-BS68] gi|168488782|ref|ZP_02712981.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae SP195] gi|237650239|ref|ZP_04524491.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae CCRI 1974] gi|237820879|ref|ZP_04596724.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae CCRI 1974M2] gi|147928571|gb|EDK79585.1| polyA polymerase family protein [Streptococcus pneumoniae SP9-BS68] gi|183572650|gb|EDT93178.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae SP195] Length = 394 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 111/409 (27%), Positives = 198/409 (48%), Gaps = 39/409 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q LQ +++ IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNLQAITEKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GD ++K YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 -QINGDILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|19745936|ref|NP_607072.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS8232] gi|50914037|ref|YP_060009.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10394] gi|139473967|ref|YP_001128683.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes str. Manfredo] gi|73619872|sp|Q5XCN7|CCA_STRP6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619877|sp|Q8P1E3|CCA_STRP8 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233885|sp|A2RF34|CCA_STRPG RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|19748093|gb|AAL97571.1| putative poly(A) polymerase [Streptococcus pyogenes MGAS8232] gi|50903111|gb|AAT86826.1| poly(A) polymerase [Streptococcus pyogenes MGAS10394] gi|134272214|emb|CAM30461.1| CCA-adding enzyme [Streptococcus pyogenes str. Manfredo] Length = 402 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/382 (28%), Positives = 191/382 (50%), Gaps = 34/382 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I Sbjct: 14 LPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL+ + ++ +G A R ED LRI+R FRF A ++D D A+ +A Sbjct: 130 QVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEAATFEA 184 Query: 194 KKG----LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248 + L+ +S ER ++E +KLL A + I M + + L QE L+ L Sbjct: 185 MRSHSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIV 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ F + ++ ++ +D KS L K + + LI+ + +++ Sbjct: 245 SLKDNFTFSDHHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIR-QERSF 303 Query: 309 SIPEIKKLFYLYGDKV--MIAKLKIF--LALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +I Y YG ++ ++ L+ L++ + + D ++ DI+ Sbjct: 304 EKLDI----YQYGKEMASLVEDLRKAQSLSVDMDRINTLDQALVIHDKHDIV-------- 351 Query: 365 LTGDDVVK-YGIPPGKKVGNIL 385 L G ++K +G+ PG ++G +L Sbjct: 352 LNGSHLIKDFGMKPGPQLGLML 373 >gi|241896306|ref|ZP_04783602.1| tRNA adenylyltransferase [Weissella paramesenteroides ATCC 33313] gi|241870467|gb|EER74218.1| tRNA adenylyltransferase [Weissella paramesenteroides ATCC 33313] Length = 405 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 146/284 (51%), Gaps = 16/284 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L++ + D+DIAT+ P+ + +IF++T + T Sbjct: 12 EALPILETIENAGYEAYFVGGSVRDTLLSKPIHDVDIATSAYPEEIKKIFNRT----VDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ I+ ++ TT R++ TD R +V F R D RRDFT+NAL + Sbjct: 68 GIEHGTVMILDHGTGYETTTFRTESTYTDFRRPDEVKFVRSLDEDLKRRDFTVNALALTK 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GG+ D+ + ++ +G R ED LR++R RF A K ID D A Sbjct: 128 DGEVIDLFGGVQDMSAKVLRAVGRPEERFHEDALRMMRAVRFAAQLDFK-IDPDTQKAIA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L ++ ERI E +KL++ + +V M G+ + F+ + L+ E Sbjct: 187 ENAPLLANIAVERINVEFSKLMQGTSASYGLVEMIKSGLNR--FMPGLSSTDQDLAAYAE 244 Query: 252 AEQVFEWKID----SLLRFIVLISWQDKKSILSMAKKFSLPREI 291 Q+ + D SLL F + ++ QD L + K+ P E+ Sbjct: 245 LLQIAQPADDSQAWSLLSFELGLNPQDTSKFLKLWKQ---PNEM 285 >gi|298694748|gb|ADI97970.1| probable PolyA polymerase family protein [Staphylococcus aureus subsp. aureus ED133] Length = 400 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFDDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMCTQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEESFNHL 216 >gi|28317079|gb|AAO39558.1| LP10544p [Drosophila melanogaster] Length = 307 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 149/300 (49%), Gaps = 18/300 (6%) Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 ++T DW+ D+ RRD TIN+++ G V DY G +DL+ R + F+G+A RI ED+LRI Sbjct: 1 MYTTDWQLDANRRDLTINSMFLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRI 60 Query: 168 LRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 LR+FRF+ E N D L A + KGL +S ERIWSE+ K++ + M Sbjct: 61 LRYFRFYGRIASEENNHDKATLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEM 120 Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI-VLISWQDKKSILSMAKK 284 + +F+ I L +E LD+ ++ +A FE +L +L S +D + K Sbjct: 121 HRCNLFEYIGLP-KEPYLDEFDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKL 179 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + R++ F+ +Q T K Y + + +L L Y+ Sbjct: 180 SAYERDLARFITQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQL-----LKYSG----- 229 Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 L++ + + W KP FP+ G+ + + G+ G ++G ++ K W +S FQL+ +DL Sbjct: 230 ---KLELYNQLKSWVKPDFPIRGNALAQRGL-NGMRLGLVMDELKLLWADSDFQLTHDDL 285 >gi|188588229|ref|YP_001920923.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum E3 str. Alaska E43] gi|188498510|gb|ACD51646.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 432 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 110/407 (27%), Positives = 194/407 (47%), Gaps = 56/407 (13%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL L ++ IVGG VRDS++N +D DI T P+ V+++F+K VI T + + Sbjct: 14 ILETLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVVKLFNK----VILTGVKH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT R D D R+ K V F + K D RRDFTINA+ +++ + Sbjct: 70 GTVTVLINSEGYEVTTYRMDGKYEDSRHPKQVNFVSNLKEDLARRDFTINAMAYNKEDGL 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 IDY G++DL+ + IK +G++ R ED LR+LR RF + + +I ++ L + + Sbjct: 130 IDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQL-DFSISNETLNSIKNLRY 188 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---QEISLDQL------ 246 +K +S ERI E NK+L + I + G+ + IF ++ + +D + Sbjct: 189 NIKNISKERIREEFNKILLSSTK--GIDILIETGLIEHIFPEIIKFCDFKVDNMYYNDNL 246 Query: 247 -----SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY-------- 293 + E E K+ ++ I+ +D + + K+F +E +Y Sbjct: 247 YAHTVRAIEEIESALHLKLTMFFYNLIRINNEDIEYTILQVKEF--LKEFQYDNNTVNKV 304 Query: 294 -FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352 LI + N + N K EIK++ L + LK+ A + Q+ + + L Sbjct: 305 TTLILYMNNDLNTKL----EIKQILNLINLDLFEDLLKVKEA----EILSQNPLYKEKRL 356 Query: 353 SDIIHWKKPL--------------FPLTGDDVVKYGIPPGKKVGNIL 385 S ++ ++ L + G D++ G+ GK +G +L Sbjct: 357 SHLLSIRENLKEILLNKECFNLKDLSINGKDLINLGLEKGKNIGEML 403 >gi|153938706|ref|YP_001391608.1| polyA polymerase family protein [Clostridium botulinum F str. Langeland] gi|152934602|gb|ABS40100.1| polyA polymerase family protein [Clostridium botulinum F str. Langeland] gi|295319640|gb|ADG00018.1| polyA polymerase family protein [Clostridium botulinum F str. 230613] Length = 450 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 116/207 (56%), Gaps = 3/207 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK++PT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIVPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R+ K V FT + + D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +S L + + Sbjct: 137 VDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFHMEESIRLNIR-ELSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 + +S ERI E+ K+L + P+ I Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGI 222 >gi|116492835|ref|YP_804570.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pediococcus pentosaceus ATCC 25745] gi|122265701|sp|Q03F94|CCA_PEDPA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116102985|gb|ABJ68128.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pediococcus pentosaceus ATCC 25745] Length = 396 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/402 (27%), Positives = 185/402 (46%), Gaps = 55/402 (13%) Query: 20 SLLNKGEDK---SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++L K ED + VGG+VRD+L+N + D+DIA++ P + IF KT + T I Sbjct: 10 AVLQKIEDAGFDAFFVGGSVRDTLLNKPIHDVDIASSAYPAEIKHIFKKT----VDTGIE 65 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ +I + +++TT R++ R +V F R K D +RRDFTINA + Sbjct: 66 HGTVMVIHDGEGYEVTTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALKEDRT 125 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 VID GL+DL ++ I+ +GD H R ED LR++R RF + K I++ L A + Sbjct: 126 VIDIFDGLSDLEHKIIRAVGDPHERFHEDALRMMRAVRFASQLDFK-IEAKTLKAIEENN 184 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI------FKEIFLDVQEISLDQLSQ 248 L +S ERI E K++ P + M + FK+ ++ +++ L Sbjct: 185 MLLGKISVERILVEFEKMMLGSKPNRGLEDMLTTKLNEYCPGFKDRSKELDQLTKYPLKL 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK-- 306 + EQV+ +I+W K + P+E+ FL + N K Sbjct: 245 LENPEQVW-----------TMIAWSLKLT----------PQEVMPFLKQWKTSNDLIKNV 283 Query: 307 --TLSIPEIKK-------LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 TL + + K + G+ ++ +++ L N DT LQ+ H Sbjct: 284 SATLQVLSMDKNDQNERLALFNAGEANVVNAIRVAQILGMNREAWLDTYQNLQIKD--TH 341 Query: 358 WKKPLFPLTGDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQ 398 +TG ++++ G I PG ++G +L K IN + Sbjct: 342 E----MAITGKELIQKGIIKPGPQMGQVLNRLKLMVINDELK 379 >gi|116617867|ref|YP_818238.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271932|sp|Q03Y57|CCA_LEUMM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116096714|gb|ABJ61865.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 401 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 113/205 (55%), Gaps = 10/205 (4%) Query: 14 DLINILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + I+ +L K ED ++ VGG+VRD+++ ++ D+DIA++ P+ V +F T Sbjct: 9 EFIDAQPILTKLEDAGFEAYFVGGSVRDTMLGKTIHDVDIASSAFPEEVKSLFHNT---- 64 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALY 128 + T I +GT+ ++ ++ITT R + TD R V F R + D RRDFTINAL Sbjct: 65 VDTGIQHGTVMVLDHGTGYEITTFRVESTYTDFRRPDHVTFVRSLEEDLKRRDFTINALA 124 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+V+D GL D++ I+ +GDA R ED LR++R RF A G NI++D Sbjct: 125 MRHDGEVLDLFDGLEDMKKGVIRAVGDAEKRFTEDALRMMRALRFSAQLG-FNIEADTQK 183 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + L ++ ER+ E KLL Sbjct: 184 ALVDLAPNLAKIAVERVRVEFEKLL 208 >gi|291529448|emb|CBK95034.1| uncharacterized domain HDIG [Eubacterium rectale M104/1] Length = 451 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 151/286 (52%), Gaps = 25/286 (8%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L ++ +VGG VRDS++ V D DI T+ PD + ++FS T K+I T I + Sbjct: 15 IIDTLQSNGFEAYLVGGCVRDSILKRPVHDWDITTSATPDEMKKVFSDT--KIIETGIKH 72 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINAL-YADQQGK 134 GT+ I+ +++ TT R D +DGR+ +V FT+ D RRDFTINA+ Y D++G Sbjct: 73 GTLTILSVDGFYECTTYRIDGAYSDGRHPDMVRFTKSLAEDLKRRDFTINAMAYNDKEG- 131 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG DL + I+ +G+ R ED LRI+R RF A E +++ +A+ + Sbjct: 132 LIDLFGGRLDLMDHVIRCVGNPEDRFKEDALRIMRALRFAAQL-EFDLEMKTKIAAFQMS 190 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L +S+ERI SE K+L P+ + V + N +KEI + + ++ + + EQ Sbjct: 191 DTLTKVSAERINSEFCKIL--TQPMGSQV-INN---YKEII----AVFIPEIRDMFDFEQ 240 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 + + ++ W +L+ A F P + L +FF+ Sbjct: 241 NNPYHMFNV--------WDHTIEVLARAALFMDPNNLALTLAAFFH 278 >gi|294498154|ref|YP_003561854.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus megaterium QM B1551] gi|294348091|gb|ADE68420.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus megaterium QM B1551] Length = 397 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 120/217 (55%), Gaps = 7/217 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L ++ VGGAVRD ++N ++ DIDIAT+ P++VM +F KT I I + Sbjct: 11 IIEKLETAGYEAYFVGGAVRDLILNRTIGDIDIATSARPEQVMELFPKT----IHVGIEH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT RS+ D R + V F D RRDFTINA+ + +G++ Sbjct: 67 GTVVVVHENETYEVTTFRSEGEYDDFRRPSSVTFISSLIEDLQRRDFTINAMAMNAKGEI 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G DLRN+ I+ +G+A R ED LR++R RF + ++ A + + Sbjct: 127 IDPFNGREDLRNQLIRTVGNAKERFHEDALRMMRAVRFVSQLA-FSLSDQTKRAIQQYGE 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 L+ +S ERI E K+L K P A+ + + +++ Sbjct: 186 LLRHVSIERITVEFEKMLSGKRPSLALALVADTELYR 222 >gi|313905494|ref|ZP_07838858.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Eubacterium cellulosolvens 6] gi|313469678|gb|EFR65016.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Eubacterium cellulosolvens 6] Length = 461 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 127/243 (52%), Gaps = 18/243 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L+ ++ VGG VRDS++ QD DI T+ P++V IF +T I T Sbjct: 11 VCTVLDSLHAAGYEAYAVGGCVRDSILGRKPQDWDITTSARPEQVKEIFDRT----IDTG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINAL-YADQ 131 I +GT+ ++ R ++TT R D TD R+ + V FT D RRDFTINA+ Y D+ Sbjct: 67 IQHGTVTVMIRGNQHEVTTYRMDGEYTDCRHPEEVTFTSSLAEDLKRRDFTINAMAYNDR 126 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G ++D GG+ DL+ I+ +GD R ED LRI+R RF A + ID L A Sbjct: 127 EG-LVDLYGGVEDLQRHVIRCVGDPMERFGEDALRIMRAVRFSAQL-DFGIDEKTLEAVR 184 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S+ERI E+ KL+ + +P + Y GI K I L + ++E Sbjct: 185 TLAPNLSKISAERICMELTKLIVSDHP-EYLRLAYETGITK--------IILPEFDAMME 235 Query: 252 AEQ 254 EQ Sbjct: 236 TEQ 238 >gi|306827536|ref|ZP_07460818.1| polyA polymerase [Streptococcus pyogenes ATCC 10782] gi|304430243|gb|EFM33270.1| polyA polymerase [Streptococcus pyogenes ATCC 10782] Length = 402 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 123/216 (56%), Gaps = 15/216 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I Sbjct: 14 LPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL+ + ++ +G A R ED LRI+R FRF A ++D D A+ +A Sbjct: 130 QVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEAATFEA 184 Query: 194 KKG----LKILSSERIWSEINKLLEAKNPLNAIVHM 225 + L+ +S ER ++E +KLL A + I M Sbjct: 185 MRSHSPLLEKISVERSFTEFDKLLMAPHWRKGISAM 220 >gi|56420716|ref|YP_148034.1| tRNA CCA-pyrophosphorylase [Geobacillus kaustophilus HTA426] gi|73619775|sp|Q5KXX0|CCA_GEOKA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|56380558|dbj|BAD76466.1| tRNA nucleotidyltransferase [Geobacillus kaustophilus HTA426] Length = 404 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 137/284 (48%), Gaps = 23/284 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I+ L + ++ VGGAVRD L+ ++ D+DIAT+ LP+ VMR+F KT I Sbjct: 9 LGIIRQLKRHGYEAYFVGGAVRDLLIGRAIGDVDIATSALPEEVMRLFPKT----IDVGS 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYA 129 +GT+ ++ +++TT R TDG Y V F R + D RRDFT+NA+ Sbjct: 65 KHGTVVVVHEGTAYEVTTFR----TDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAM 120 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D++G +ID GG + R I +G A R ED LR++R RF + G + D A Sbjct: 121 DERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLG-FALSEDTKSA 179 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ++ + +S ER+ E+ KLL A+ + + G+F + L Q+ Sbjct: 180 IVQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYL------PGLAAKVQL 233 Query: 250 IEAEQVFEWK--IDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 + + F W R+ +L D K I + + LP ++ Sbjct: 234 LRSAAAFRWPWLTKREERWALLCRALDVKDIRPFLRAWKLPNKV 277 >gi|261417981|ref|YP_003251663.1| tRNA CCA-pyrophosphorylase [Geobacillus sp. Y412MC61] gi|319767207|ref|YP_004132708.1| polynucleotide adenylyltransferase region protein [Geobacillus sp. Y412MC52] gi|261374438|gb|ACX77181.1| Polynucleotide adenylyltransferase region [Geobacillus sp. Y412MC61] gi|317112073|gb|ADU94565.1| Polynucleotide adenylyltransferase region protein [Geobacillus sp. Y412MC52] Length = 404 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 23/284 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I+ L + ++ VGGAVRD L+ + D+DIAT+ LP+ VMR+F KT I Sbjct: 9 LGIIRQLKRHGYEAYFVGGAVRDLLIGRPIGDVDIATSALPEEVMRLFPKT----IDVGS 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYA 129 +GT+ ++ +++TT R TDG Y V F R + D RRDFT+NA+ Sbjct: 65 KHGTVVVVHEGTAYEVTTFR----TDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAM 120 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D++G +ID GG + R I +G A R ED LR++R RF + G + D A Sbjct: 121 DERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLG-FALAEDTKSA 179 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ++ + +S ER+ E+ KLL A+ + + G+F + L Q+ Sbjct: 180 IVQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYL------PGLAAKEQL 233 Query: 250 IEAEQVFEWK--IDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 + + F W R+ +L D K I + + LP ++ Sbjct: 234 LRSAAAFRWPWLTKREERWALLCRALDVKDIRPFLRAWKLPNKV 277 >gi|295703505|ref|YP_003596580.1| tRNA nucleotidyltransferase [Bacillus megaterium DSM 319] gi|294801164|gb|ADF38230.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus megaterium DSM 319] Length = 397 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGGAVRD ++N ++ DIDIAT+ P++VM +F KT I I +GT+ ++ + Sbjct: 21 EAYFVGGAVRDLILNRTIGDIDIATSARPEQVMELFPKT----IHVGIEHGTVVVVHENE 76 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT RS+ D R + V F D RRDFTINA+ + +G++ID G DL Sbjct: 77 TYEVTTFRSEGEYDDFRRPSSVTFISSLIEDLQRRDFTINAMAMNAKGEIIDPFNGREDL 136 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 RN+ I+ +G+A R ED LR++R RF + ++ A + + L+ +S ERI Sbjct: 137 RNQLIRTVGNAKERFHEDALRMMRAVRFVSQLA-FSLSDQTKRAIQQYGELLRHVSIERI 195 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFK 232 E K+L K P A+ + + +++ Sbjct: 196 TVEFEKMLSGKRPSLALALVADTELYR 222 >gi|258422511|ref|ZP_05685419.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9635] gi|257847268|gb|EEV71274.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9635] Length = 411 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRTQMADIKFLSIERIVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEESFNHL 227 >gi|297529649|ref|YP_003670924.1| polynucleotide adenylyltransferase region [Geobacillus sp. C56-T3] gi|297252901|gb|ADI26347.1| Polynucleotide adenylyltransferase region [Geobacillus sp. C56-T3] Length = 404 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 23/284 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I+ L + ++ VGGAVRD L+ + D+DIAT+ LP+ VMR+F KT I Sbjct: 9 LGIIRQLKRHGYEAYFVGGAVRDLLIGRPIGDVDIATSALPEEVMRLFPKT----IDVGS 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYA 129 +GT+ ++ +++TT R TDG Y V F R + D RRDFT+NA+ Sbjct: 65 KHGTVVVVHEGTAYEVTTFR----TDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAM 120 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D++G +ID GG + R I +G A R ED LR++R RF + G + D A Sbjct: 121 DERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLG-FALAEDTKSA 179 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ++ + +S ER+ E+ KLL A+ + + G+F + L Q+ Sbjct: 180 IVQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYL------PGLAAKEQL 233 Query: 250 IEAEQVFEWK--IDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 + + F W R+ +L D K I + + LP ++ Sbjct: 234 LRSAAAFRWPWLTKREERWALLCRALDVKDIRPFLRAWKLPNKV 277 >gi|323439540|gb|EGA97261.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus O11] gi|323442221|gb|EGA99852.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus O46] Length = 400 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRTQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEESFNHL 216 >gi|325264322|ref|ZP_08131053.1| polyA polymerase [Clostridium sp. D5] gi|324030393|gb|EGB91677.1| polyA polymerase [Clostridium sp. D5] Length = 444 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 116/209 (55%), Gaps = 14/209 (6%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++ +D DI T+ P+ + R+F +T + T I +GT+ ++ ++ F++ Sbjct: 26 VGGCVRDSILCRKPEDWDITTSARPEEIKRLFRRT----VDTGIEHGTLTVMIGREGFEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D L D R+ K V FT + D RRDFTINA+ + + +++D GG+ DL + Sbjct: 82 TTYRVDGLYEDSRHPKDVTFTTSLEEDLRRRDFTINAMAYNDEVRLVDVFGGMKDLNHHL 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILSSERIW 206 I+ +GD R ED LRILR RF A EKN A + LK +S+ERI Sbjct: 142 IRCVGDPAERFSEDALRILRAVRFSAQLAFPIEKNTAQ----AVRELAPTLKNISAERIQ 197 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E+ KLL + +P + I Y GI K I Sbjct: 198 VELVKLLMSDHP-DLIQDAYELGITKIIL 225 >gi|16079302|ref|NP_390126.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. 168] gi|221310161|ref|ZP_03592008.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. 168] gi|221314483|ref|ZP_03596288.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319405|ref|ZP_03600699.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323681|ref|ZP_03604975.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. SMY] gi|1709578|sp|P42977|CCA_BACSU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|1146238|gb|AAB38446.1| poly(A) polymerase [Bacillus subtilis subsp. subtilis str. 168] gi|2634663|emb|CAB14161.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 397 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 9 LPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ + +++TT R SD + R ++V F + D RRD TINA+ G Sbjct: 65 EHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTADG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 KV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K Sbjct: 125 KVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSPETEEAIAKE 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K L +S ER E KLL+ + A+ + +++E+ Sbjct: 184 KSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYEEL 224 >gi|315924857|ref|ZP_07921074.1| poly A polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621756|gb|EFV01720.1| poly A polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 413 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 140/276 (50%), Gaps = 31/276 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+ D+D+AT P+ + +FS+ +V+ +GT+ + ++ Sbjct: 21 LVGGAVRDALLGAVPTDMDLATDARPEAMQALFSRALPGARVVTAGARFGTVGVQLDGQW 80 Query: 89 FDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 F+ITT R+D DGR+ +VVF + D LRRDFT+N L D++G V+DYVGGL+DL+ Sbjct: 81 FEITTFRADKNYGDGRHPDRVVFGTSVREDVLRRDFTVNGLLMDRRGVVLDYVGGLSDLK 140 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF-----FA------HYGEKNIDSDGLVASIKAKK 195 R ++ IGD R ED LR R R FA H + D+ G Sbjct: 141 ARRLRCIGDPQARFAEDKLRKWRCVRLATIKGFAIEAATWHALAADADTAG--------- 191 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 +S ERI E K L + ++ + G++ ++ + EIS ++ +A + Sbjct: 192 ----VSCERIGGEWRKFLIGPHFGRGMMLLAASGLWADLIRRL-EISRARIPSEGDASAL 246 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 D +R L++ + K++ + K +LP+ + Sbjct: 247 DALPADPAVRLAFLLTGE--KALSEVLKPLALPKAM 280 >gi|170017048|ref|YP_001727967.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc citreum KM20] gi|226702072|sp|B1MYC1|CCA_LEUCK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|169803905|gb|ACA82523.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc citreum KM20] Length = 403 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL + ++ VGGAVRD L+N + D+DIAT+ P+ + +F+KT + T I + Sbjct: 16 ILEHIESAGFEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEIKALFTKT----VDTGIQH 71 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++ITT R++ TD R KV F R D RRDFTINA+ + G + Sbjct: 72 GTVMVLDHGDGYEITTFRTESTYTDFRRPDKVTFVRSLAEDLKRRDFTINAIAMTKDGDI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GL D+ + I+ +GDA R ED LRI+R RF A G +I A + + Sbjct: 132 IDLFDGLTDMAQKRIRAVGDAEVRFNEDALRIMRALRFSAQLG-FDIAPHTKAALKQIGR 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ ++ ERI E KLL + N++ Sbjct: 191 NLEKIAVERIRVEFEKLLMGQYASNSL 217 >gi|313884128|ref|ZP_07817894.1| putative tRNA adenylyltransferase [Eremococcus coleocola ACS-139-V-Col8] gi|312620575|gb|EFR31998.1| putative tRNA adenylyltransferase [Eremococcus coleocola ACS-139-V-Col8] Length = 411 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 15/192 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRDSL+ L + DIDI ++ P + IF T I +GTI ++ + Sbjct: 26 EAYFVGGCVRDSLLGLPIHDIDITSSAQPQEIEAIFKHT----IDVGKEHGTIIVMWDQV 81 Query: 88 YFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 +++TT R +G+Y+ V F R+ + D+LRRDFT+NAL D+QG+V D+ G Sbjct: 82 PYEVTTFR----IEGKYSDHRRPDSVAFVRNLQEDTLRRDFTVNALALDRQGQVYDFHDG 137 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL+ I+ +G+A R ED LR++R RF + G +I+ L A K LK +S Sbjct: 138 LKDLKAERIRAVGNAEARFQEDGLRMMRALRFASQLG-FSIEETTLRAIQKLAPTLKYIS 196 Query: 202 SERIWSEINKLL 213 ERI E +K L Sbjct: 197 MERIRIEFSKFL 208 >gi|331003536|ref|ZP_08327033.1| hypothetical protein HMPREF0491_01895 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412377|gb|EGG91768.1| hypothetical protein HMPREF0491_01895 [Lachnospiraceae oral taxon 107 str. F0167] Length = 406 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 8/219 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ +L + + VGG VRDSL+ + D DI T LP + +IF KT T I++ Sbjct: 12 IIEMLEESGFEGFAVGGCVRDSLLQKTPTDWDITTNALPSEMKKIFKKT----FDTGIAH 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI ++ +++TT R D +DGR+ V F+++ D RRDFTINA+ + + Sbjct: 68 GTITVLMDSVGYELTTYRIDGNYSDGRHPDNVFFSKNLSEDLCRRDFTINAMAYSHKRGI 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G DL I+ +GDA R ED LR+LR RF A G + I+ D VA + Sbjct: 128 VDLYSGREDLEKGIIRAVGDAKKRFDEDALRMLRAVRFSAQLGFE-IEKDTFVAITEKAS 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L +S ERI+ E+NK L N I +Y+ G++K I Sbjct: 187 LLSKVSKERIFVELNKTLSGDFAQN-IKFIYSSGLYKYI 224 >gi|197302364|ref|ZP_03167421.1| hypothetical protein RUMLAC_01093 [Ruminococcus lactaris ATCC 29176] gi|197298543|gb|EDY33086.1| hypothetical protein RUMLAC_01093 [Ruminococcus lactaris ATCC 29176] Length = 444 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 114/206 (55%), Gaps = 8/206 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++ QD DI T+ P+ + ++F +T I T I +GT+ ++ K F++ Sbjct: 26 VGGCVRDSILARRPQDWDITTSAKPEEIKKLFRRT----IDTGIEHGTVTVLFGKDSFEV 81 Query: 92 TTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT + D RRDFTINA+ + Q +++D GG+ DL + Sbjct: 82 TTYRIDGAYEDSRHPKEVQFTNRLEEDLRRRDFTINAMAYNDQVRLVDVFGGMQDLNHHL 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +GD R ED LRILR RF A I+S A K L+ +S+ERI +E+ Sbjct: 142 IRCVGDPEERFSEDALRILRAVRFSAQLNFP-IESATADAIRKLAPNLQNISAERIQAEL 200 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIF 235 KLL + +P I Y G+ K I Sbjct: 201 VKLLVSPHP-ERIRDAYELGLTKVIL 225 >gi|163791067|ref|ZP_02185487.1| poly A polymerase [Carnobacterium sp. AT7] gi|159873623|gb|EDP67707.1| poly A polymerase [Carnobacterium sp. AT7] Length = 400 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 115/207 (55%), Gaps = 10/207 (4%) Query: 12 DSDLINILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 D L +++K E+ ++ VGG+VRD+L+ ++ D+DIAT+ PD + +IF KT Sbjct: 5 DPQFKQALPIIDKIEEAGFEAYFVGGSVRDTLLKETINDVDIATSAKPDEIKQIFQKT-- 62 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA 126 I I +GT+ ++ + ++ITT R++ R V F R K D RRDFTINA Sbjct: 63 --IDVGIEHGTVMVLWKDATYEITTFRTESTYQDFRRPDNVEFVRSLKEDLKRRDFTINA 120 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 L ++ G++IDY G DL + IK +G+ R ED LR++R RF + + +D + Sbjct: 121 LAMNRDGQIIDYFEGQTDLEKKLIKAVGNPEERFFEDALRMMRGVRFVSQLNFE-MDRET 179 Query: 187 LVASIKAKKGLKILSSERIWSEINKLL 213 +A K L+ ++ ERI E KLL Sbjct: 180 ELAIQKNHPLLEKIAIERIQVEFTKLL 206 >gi|253732099|ref|ZP_04866264.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724146|gb|EES92875.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 411 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRTQMADIKFLSIERIVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEKSFNHL 227 >gi|315613527|ref|ZP_07888434.1| polyA polymerase family protein [Streptococcus sanguinis ATCC 49296] gi|315314218|gb|EFU62263.1| polyA polymerase family protein [Streptococcus sanguinis ATCC 49296] Length = 399 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 114/200 (57%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL N+ ++ +G A R ED LRI+R FRF A G K ++S+ A Sbjct: 130 EIIDLFQGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLGFK-LESETFEAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLL 213 L+ +S ER + E +KLL Sbjct: 189 TSLLEKISVERTFVEFDKLL 208 >gi|15618754|ref|NP_225040.1| Poly A polymerase [Chlamydophila pneumoniae CWL029] gi|15836378|ref|NP_300902.1| poly A polymerase [Chlamydophila pneumoniae J138] gi|16752194|ref|NP_445561.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39] gi|33242205|ref|NP_877146.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183] gi|4377160|gb|AAD18983.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029] gi|7189937|gb|AAF38800.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39] gi|8979219|dbj|BAA99053.1| poly A polymerase [Chlamydophila pneumoniae J138] gi|33236716|gb|AAP98803.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183] Length = 410 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 125/242 (51%), Gaps = 10/242 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L N G ++ VGG VRD LMN ++DIDIAT P V IF VI +++ Sbjct: 13 LIKLRNAGY-QAYFVGGCVRDMLMNRPLEDIDIATNASPTIVSTIFP----DVISIGVAF 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 G I + + F++ T RSD DGR+ + + D+LRRDFT+N +Y D + KV Sbjct: 68 GIIVVKQDGRLFEVATFRSDGEYKDGRHPDRIIFSSMREDALRRDFTVNGMYYDPFEDKV 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D+V G D+ + I+ IG R ED LRILR RF + G +D A IK Sbjct: 128 FDFVEGTRDIEKKVIRAIGHPRLRFSEDKLRILRAIRFSSSLG-FTLDPTTERAIIKEAP 186 Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L +S ERIW E+ K+L+ + P A+ + + IF ++++I L IE + Sbjct: 187 ALVNSVSPERIWQELKKMLK-RQPYGALSLLLKLKVLIFIFPELRDIPYSLLRTTIEFAR 245 Query: 255 VF 256 F Sbjct: 246 KF 247 >gi|238854426|ref|ZP_04644767.1| putative tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus jensenii 269-3] gi|260664441|ref|ZP_05865293.1| tRNA adenylyltransferase [Lactobacillus jensenii SJ-7A-US] gi|282934012|ref|ZP_06339300.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1] gi|313472159|ref|ZP_07812651.1| poly A polymerase [Lactobacillus jensenii 1153] gi|238832953|gb|EEQ25249.1| putative tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus jensenii 269-3] gi|239529533|gb|EEQ68534.1| poly A polymerase [Lactobacillus jensenii 1153] gi|260561506|gb|EEX27478.1| tRNA adenylyltransferase [Lactobacillus jensenii SJ-7A-US] gi|281301922|gb|EFA94178.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1] Length = 396 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 113/408 (27%), Positives = 193/408 (47%), Gaps = 42/408 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + ++ L K ++ VGG+VRD L+N + D+DIAT+ P+ V ++F ++ I T I Sbjct: 14 LPVVQTLTKAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQLFERS----IDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R++ R V F ++ + D RRDFTINAL D+ G Sbjct: 70 QHGTVTVLYDDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTINALAMDEYG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D GL+DL+N IK +G+ R ED LR++R RF + + +++ + A Sbjct: 130 NIHDLFNGLDDLKNGLIKAVGNPERRFNEDALRMMRAVRFMSQL-KFSLEENTRQAICDH 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + L +S ERI E K+ + +A ++FLD QLS+ + Sbjct: 189 HELLSKISVERIREEFVKMCVGPHARSAF----------QVFLDT------QLSEEVPD- 231 Query: 254 QVFEWKIDSLLRFIVLI-SWQDKKSILS-MAKKFSLPRE-IRYFLISFFNCNFNQKTLSI 310 F K + L F L S + S+ + +A LP E I F+ + N NQ T + Sbjct: 232 --FRGKKEQLSVFPSLTFSPSTEASVWAIIAILLKLPNEQIPKFMRDWKNS--NQMTRKV 287 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL--QVLSDIIHWKKPLFPLT-- 366 EI F L D + ++FLA ++ D IL V S+ + + P+ Sbjct: 288 EEIVFFFDLLSDHSP-SDYELFLAGQDTVMSACDVARILGQPVNSEALVDRYVALPIKNH 346 Query: 367 ------GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G ++++GI PG +G++L + ++ +E + + + Sbjct: 347 KELVVDGSTLIEWGIKPGPSLGDMLAKITEAVVDGKIANDEEAIKNFI 394 >gi|209559222|ref|YP_002285694.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes NZ131] gi|209540423|gb|ACI60999.1| tRNA nucleotidyltransferase [Streptococcus pyogenes NZ131] Length = 386 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 40/373 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I +GT+ ++ Sbjct: 10 EAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGIEHGTVLVLENGG 65 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G+VID GL DL Sbjct: 66 EYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENGQVIDKFRGLIDL 125 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG----LKILS 201 + + ++ +G A R ED LRI+R FRF A ++D D + +A + L+ +S Sbjct: 126 KQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEATTFEAMRSHSPLLEKIS 180 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEWKI 260 ER ++E +KLL A + I M + + L QE L+ L ++ F Sbjct: 181 VERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLKDNFTFSDHH 240 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 + ++ ++ +D KS L K + + LI+ + +++ +I Y Y Sbjct: 241 QAWTYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIR-QERSFEKLDI----YQY 295 Query: 321 GDKV--MIAKLKIFLAL-----HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK- 372 G K+ ++ L+ +L H N L D ++ DI+ L G ++K Sbjct: 296 GKKMASLVEDLRKAQSLSVDMDHINTL---DQALVIHDKHDIV--------LNGSHLIKD 344 Query: 373 YGIPPGKKVGNIL 385 +G+ PG ++G +L Sbjct: 345 FGMKPGPQLGLML 357 >gi|291484667|dbj|BAI85742.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. natto BEST195] Length = 397 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 9 LPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ + +++TT R SD + R ++V F + D RRD TINA+ G Sbjct: 65 EHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTADG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 KV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K Sbjct: 125 KVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSPETEEAIAKE 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K L +S ER E KLL+ + A+ + +++E+ Sbjct: 184 KSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYEEL 224 >gi|325681365|ref|ZP_08160891.1| HDIG domain protein [Ruminococcus albus 8] gi|324106855|gb|EGC01145.1| HDIG domain protein [Ruminococcus albus 8] Length = 444 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 5/201 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +L+K E ++ IVGG VRDSLM+ S D D+ T P ++RIF+ + I T + + Sbjct: 12 VLDVLSKNEYEAYIVGGCVRDSLMDKSPHDYDVCTNCTPSEMVRIFNN--FHTIETGLKH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ +ITT RSD TD R V F + + D RRDFTINA+ + + Sbjct: 70 GTLTVMSEHMPVEITTYRSDGEYTDHRRPDTVKFETELREDLRRRDFTINAMCFNPDEGI 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G DL R I+ +G A R ED LRI+R RF A + +I+ + +A K Sbjct: 130 VDMFEGEKDLELRVIRCVGKAEERFEEDALRIMRALRFAA-VLDFSIEENTSLAMRKKAH 188 Query: 196 GLKILSSERIWSEINKLLEAK 216 L +S+ERI++E+ KL+ K Sbjct: 189 LLNAISAERIFTELKKLICGK 209 >gi|319946991|ref|ZP_08021225.1| polyA polymerase family protein [Streptococcus australis ATCC 700641] gi|319747039|gb|EFV99298.1| polyA polymerase family protein [Streptococcus australis ATCC 700641] Length = 406 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 116/204 (56%), Gaps = 7/204 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD+++ + D+DIA++ P+ IF +T I Sbjct: 12 EALPILEKIRRAGYEAYFVGGSVRDAILGRPIHDVDIASSSYPEETKAIFERT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R+ D+ D R V F R + D RRDFT+N+ + Sbjct: 68 GIEHGTVLVLENHQEYEITTFRTEDVYVDFRRPSAVNFVRSLEEDLKRRDFTVNSFALSE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G++ID GL DL NR ++ +G A R ED LRI+R FRF A G +++ + A Sbjct: 128 EGEIIDLFNGLEDLENRVLRAVGVATERFNEDALRIMRGFRFQASLG-FDLEEETFKAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEA 215 L+ +S ERI+ E++KLL A Sbjct: 187 DCAPLLEKISVERIFIELDKLLLA 210 >gi|310825989|ref|YP_003958346.1| poly(A) polymerase [Eubacterium limosum KIST612] gi|308737723|gb|ADO35383.1| poly(A) polymerase [Eubacterium limosum KIST612] Length = 415 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 102/186 (54%), Gaps = 10/186 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGGAVRD L+ + D D T LPD V F T I +GTI +I KK ++ Sbjct: 21 IVGGAVRDMLLGKAPSDYDFTTDALPDEVESWFEHT----ITVGKHFGTIGVIMDKKVYE 76 Query: 91 ITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + DGR+ +V+FT D + D RRDFTIN L D++G V DYVGGL D+RN Sbjct: 77 ITTFRKEASYADGRHPDEVLFTDDVREDVSRRDFTINGLLMDERGCVFDYVGGLEDIRNG 136 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS-IKAKKGLKILSSERIWS 207 ++ IGD R ED LR R R A EK ++ D S I+ +S ERI Sbjct: 137 MVRCIGDPKKRFEEDRLRKWRCIRLAA---EKRMELDERTRSAIRDNPDTAGVSIERIRG 193 Query: 208 EINKLL 213 E+ +++ Sbjct: 194 ELTRIM 199 >gi|225859313|ref|YP_002740823.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae 70585] gi|225720864|gb|ACO16718.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae 70585] Length = 394 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 112/411 (27%), Positives = 197/411 (47%), Gaps = 43/411 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH--------QDTCFILQVLSDIIHWKK 360 ++ E +L K + I L L NL Q T Q L+ IH KK Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQATTEKYQSLT--IHDKK 342 Query: 361 PLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + + GD ++K YG PG +G IL + ++ + ++E +H LR+ Sbjct: 343 EI-QINGDILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|149011794|ref|ZP_01832990.1| predicted S-transferase [Streptococcus pneumoniae SP19-BS75] gi|147764225|gb|EDK71157.1| predicted S-transferase [Streptococcus pneumoniae SP19-BS75] Length = 394 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 111/409 (27%), Positives = 197/409 (48%), Gaps = 39/409 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q LQ ++ IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNLQAITKKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GD ++K YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 -QINGDILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|322378795|ref|ZP_08053224.1| poly(A) polymerase [Helicobacter suis HS1] gi|322380644|ref|ZP_08054796.1| poly(A) polymerase [Helicobacter suis HS5] gi|321146966|gb|EFX41714.1| poly(A) polymerase [Helicobacter suis HS5] gi|321148825|gb|EFX43296.1| poly(A) polymerase [Helicobacter suis HS1] Length = 407 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 130/234 (55%), Gaps = 5/234 (2%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L+ ++ L+ +G ++ +VGG+VRD L+N +D D+AT P++++ + +++ + Sbjct: 15 LLELIDLIEQGGFEAVVVGGSVRDLLLNKKPKDYDLATNATPEQLLALL-QSKMQTSLVG 73 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 + +GT+ ++ + ++F+ITT R + T+ R+ KV F ++D RRD TINAL + Sbjct: 74 LKFGTLGVLYKGQFFEITTYRLEFDYTNHRHPKVSFVNSLESDLSRRDLTINALAFHPKK 133 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D GGL DL++R + F+G R+ ED LRILR RF + G K +D A Sbjct: 134 GLLDLHGGLQDLKDRKLAFVGVPSVRLEEDALRILRAMRFASTLGFK-LDVKSENALFDQ 192 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 L +S ERIW E ++LL N + V M + + IF + L +LS Sbjct: 193 ANLLDKISKERIWHECSRLLVGFNASD--VCMRYCTLLERIFGSLDSKLLAKLS 244 >gi|304440633|ref|ZP_07400517.1| possible tRNA adenylyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370820|gb|EFM24442.1| possible tRNA adenylyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 441 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/210 (40%), Positives = 115/210 (54%), Gaps = 16/210 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 +L+N+ ++LN +S VGGAVRD ++ S+ D DI T PD + + Y I Sbjct: 8 ELMNLFNILN-SHYESYFVGGAVRDMILGYSIHDYDITTLATPDEIRKTLKM--YTTIDI 64 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINAL 127 S GT+ + DIT R DG Y +V+F++D K D RRDFTINA+ Sbjct: 65 GGSLGTVLALTENYSVDITPFR----LDGEYKNFRKPEEVIFSKDVKEDLKRRDFTINAI 120 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + G+ IDYVGGL DL+N+ I+ IGDA+ RI ED LRILR RF Y + I++ Sbjct: 121 LYN--GEFIDYVGGLRDLKNKIIRPIGDANIRIKEDALRILRAVRFATKY-DFEIEASLE 177 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKN 217 A I LK +S ERI E K+L KN Sbjct: 178 SAIISNVNLLKNISFERIRDEFVKILLDKN 207 >gi|138895759|ref|YP_001126212.1| tRNA CCA-pyrophosphorylase [Geobacillus thermodenitrificans NG80-2] gi|196248641|ref|ZP_03147341.1| Polynucleotide adenylyltransferase region [Geobacillus sp. G11MC16] gi|166233855|sp|A4IQ63|CCA_GEOTN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|134267272|gb|ABO67467.1| Poly(A) polymerase [Geobacillus thermodenitrificans NG80-2] gi|196211517|gb|EDY06276.1| Polynucleotide adenylyltransferase region [Geobacillus sp. G11MC16] Length = 404 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 114/221 (51%), Gaps = 15/221 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I+ LN+ ++ VGGAVRD L+ + D+DIAT+ LPD VM IF KT I Sbjct: 9 LGIIRQLNRHGYEAYFVGGAVRDLLLGRPIGDVDIATSALPDEVMAIFPKT----IDVGS 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYA 129 +GT+ ++ +++TT R TDG Y V F R + D RRDFT+NA+ Sbjct: 65 KHGTVVVVHEGTAYEVTTFR----TDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAM 120 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D+ G +ID GG + R I+ +G+A R ED LR++R RF + G ++ D A Sbjct: 121 DEHGTIIDPFGGQEAIEKRLIRTVGEADARFREDALRMMRAVRFVSQLG-FSLAIDTKKA 179 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 I L +S ER+ E+ KLL A+ + G+ Sbjct: 180 IIANAPLLAHISVERMTMEMEKLLAGPFAAEALPLLAETGL 220 >gi|306829865|ref|ZP_07463052.1| tRNA adenylyltransferase [Streptococcus mitis ATCC 6249] gi|304427876|gb|EFM30969.1| tRNA adenylyltransferase [Streptococcus mitis ATCC 6249] Length = 399 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 7/202 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 130 EIIDLFHGLKDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEQETFEAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 189 TPLLEKISVERTFVEFDKLLRA 210 >gi|82751056|ref|YP_416797.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus RF122] gi|123549198|sp|Q2YY49|CCA_STAAB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|82656587|emb|CAI81010.1| probable PolyA polymerase family protein [Staphylococcus aureus RF122] Length = 400 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNNENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + + I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAAERFQEDALRMIRCLRFQSQLSFE-IATETFEAMRTQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEKSFNHL 216 >gi|322391581|ref|ZP_08065050.1| polyA polymerase family protein [Streptococcus peroris ATCC 700780] gi|321145664|gb|EFX41056.1| polyA polymerase family protein [Streptococcus peroris ATCC 700780] Length = 399 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 112/190 (58%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T + I +GT+ ++ ++ Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRT----VDIGIEHGTVLVLEGEE 81 Query: 88 YFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R V F R + D RRDFT+NA D+ G+++D GL DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDLFDGLKDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A G ++++ A L+ +S ER Sbjct: 142 ENQILRAVGVASERFNEDALRIMRGFRFQASLG-FELETETFKAMKVLTPLLEKISIERT 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FVEFDKLLLA 210 >gi|21910123|ref|NP_664391.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS315] gi|28896178|ref|NP_802528.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes SSI-1] gi|71903318|ref|YP_280121.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS6180] gi|94988359|ref|YP_596460.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS9429] gi|94992241|ref|YP_600340.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS2096] gi|73619870|sp|Q8K7W5|CCA_STRP3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|123640057|sp|Q48U40|CCA_STRPM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233881|sp|Q1JCB2|CCA_STRPB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233882|sp|Q1JM96|CCA_STRPC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|21904315|gb|AAM79194.1| putative poly(A) polymerase [Streptococcus pyogenes MGAS315] gi|28811429|dbj|BAC64361.1| putative poly(A) polymerase [Streptococcus pyogenes SSI-1] gi|71802413|gb|AAX71766.1| poly(A) polymerase [Streptococcus pyogenes MGAS6180] gi|94541867|gb|ABF31916.1| tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS9429] gi|94545749|gb|ABF35796.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS2096] Length = 402 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 122/216 (56%), Gaps = 15/216 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I Sbjct: 14 LPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL + ++ +G A R ED LRI+R FRF A ++D D A+ +A Sbjct: 130 QVIDKFRGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEAATFEA 184 Query: 194 KKG----LKILSSERIWSEINKLLEAKNPLNAIVHM 225 + L+ +S ER ++E +KLL A + I M Sbjct: 185 MRSHSPLLEKISVERSFTEFDKLLMAPHWRKGISAM 220 >gi|306824855|ref|ZP_07458199.1| polyA polymerase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433066|gb|EFM36038.1| polyA polymerase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 399 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 7/202 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + VA Sbjct: 130 EIIDLFDGLKDLENQVLRAVGIASERFNEDALRIMRGFRFQASLG-FELEPETFVAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 189 TPLLEKISVERTFVEFDKLLLA 210 >gi|296112020|ref|YP_003622402.1| polynucleotide adenylyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295833552|gb|ADG41433.1| polynucleotide adenylyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 403 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 9/215 (4%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L L ++ VGGAVRD L+N + D+DIAT+ P+ V R+F+ T + T I +G Sbjct: 17 LKRLEDAGHEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEVKRLFNTT----VDTGIQHG 72 Query: 79 TIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVI 136 T+ ++ ++ITT R++ TD R KV F R D RRDFTINAL G ++ Sbjct: 73 TVMVLDFGNGYEITTFRTESTYTDFRRPDKVTFVRSLLEDLKRRDFTINALAMTHTGDIV 132 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKK 195 D GL+DL+ I+ +GDA R ED LR++R RF A + +D+ + ++ Sbjct: 133 DLFNGLSDLKKGIIRAVGDAEVRFTEDALRMMRALRFSAQLSFDIAVDTQKALKTLAP-- 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 L+ ++ ERI E KLL+ + ++ + G+ Sbjct: 191 NLEKIAVERIRVEFEKLLQGEKAAQSMEMAVHDGV 225 >gi|254556742|ref|YP_003063159.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum JDM1] gi|254045669|gb|ACT62462.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum JDM1] Length = 407 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 108/409 (26%), Positives = 179/409 (43%), Gaps = 49/409 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRD+++ + D+DIAT+ P V ++F +T + T I +GT+ I+ Sbjct: 26 EAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFKRT----VDTGIEHGTVMILDHGN 81 Query: 88 YFDITTLRSDLITDG-----RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++ TT R++ G R +V F R K D RRDFTINAL G+VID GL Sbjct: 82 GYETTTFRTE---SGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTANGEVIDLFDGL 138 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 D+ ++ +G A R ED LR++R RF + G I+S A L ++ Sbjct: 139 ADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLG-FTIESQTEQAIADNAALLAKIAV 197 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEWKID 261 ER E KLL ++P+ + + +++ + + QE L QL + W + Sbjct: 198 ERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYMPAMADQEAMLRQLMALP------AWHLP 251 Query: 262 SLLRFIVLISW----QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 S+ L+SW D+ ++ + K + E+ N T + IK L Sbjct: 252 SIESTWTLLSWTMQRTDEAAVRQLLKTWKTSNEL-----------INHVTAA---IKALM 297 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTH---------QDTCFILQVLSDIIHWKKPLFPLTGD 368 L + + A+ + L + QD ++Q + + K + G Sbjct: 298 ALKHNGQLTAQENFYTGLEALKTANQVATILGFGQDQAQLVQAYASLPIHDKHELAINGG 357 Query: 369 DVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 D++K + PG +G IL C Q + Q+ L R ++A S+ Sbjct: 358 DLLKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405 >gi|320538282|ref|ZP_08038167.1| uncharacterized domain HDIG [Treponema phagedenis F0421] gi|320144858|gb|EFW36589.1| uncharacterized domain HDIG [Treponema phagedenis F0421] Length = 453 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 8/222 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L I ++ + +VGG+VRD L+ + D D+AT P++V ++F T IPT Sbjct: 12 LAEIAAVFTNAGFQVYLVGGSVRDYLLKKAAHDWDLATDASPEKVRKLFKHT----IPTG 67 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD-Q 131 I +GTI I+ + K + TT R++ TD R+ V + R + D RRDFTINA Sbjct: 68 IKHGTITILYKGKSIECTTFRTEADYTDSRHPDAVNYARSIEEDLSRRDFTINAFAVKLP 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G++ D G+ DLR + I+ +G+ R ED LR +R RF A + +I+ + L A Sbjct: 128 EGRITDLFNGMRDLRKKIIRTVGNPLERFSEDGLRPIRAIRFAAQL-DFSIEPETLKAIP 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + +K +S ER E +K+L+ P AI M+ GI +E Sbjct: 187 LSIAKIKTISVERFQDEFSKILQTDKPSVAIRLMHESGILQE 228 >gi|237739984|ref|ZP_04570465.1| Poly(A) polymerase [Fusobacterium sp. 2_1_31] gi|229422001|gb|EEO37048.1| Poly(A) polymerase [Fusobacterium sp. 2_1_31] Length = 451 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 13/225 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL LNK K IVGG++RD L+ L +DID T I + + +FS+ Y T Sbjct: 14 IEILRKLNK-YGKGYIVGGSIRDILLGLKPKDIDFTTNIPYETLKDLFSE--YNPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVV-------FTRDWKADSLRRDFTINALY 128 ++G ++I + ++I R D + K+V F D K D RRDF+INA+ Sbjct: 71 AFGVLRIRVNEIDYEIAKFREDNYEEKDGLKIVPEDNKVDFVDDIKEDLARRDFSINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G + S+ + Sbjct: 131 YNEADGIVDLYNGQKDIENKVINFVGNAEERIIEDPLRILRAFRFMSRLGFSS--SENTI 188 Query: 189 ASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +IK +K LK + ERI E +KLL +N N + M + G+ + Sbjct: 189 EAIKKQKDLLKSIPEERITMEFSKLLLGENVKNTLTAMKDTGVLE 233 >gi|171913058|ref|ZP_02928528.1| metal dependent phosphohydrolase [Verrucomicrobium spinosum DSM 4136] Length = 439 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 111/434 (25%), Positives = 192/434 (44%), Gaps = 56/434 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++I+ L + ++ GG VRD LM +D DIAT+ PD V R+F K+ Sbjct: 6 VSIVRRLVEAGHQAVFAGGCVRDHLMGKEPKDYDIATSARPDEVQRLFPKS----FAVGA 61 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133 +G I + + F+I T R+D DGR + V + D+ RRDFT+N L+ D Sbjct: 62 HFGVILVREGQHSFEIATFRNDGEYADGRRPESVTFTTAEEDAHRRDFTVNGLFYDPIND 121 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +V+DYVGG DL + ++ IGD R ED+LR+LR RF G + I+ A ++ Sbjct: 122 EVLDYVGGRQDLARQVLRAIGDPRKRFEEDHLRLLRAVRFATVLGFE-IEPGTWAAMLEM 180 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + +S+ERI E++++L N + + + G+ + ++ + Q E Sbjct: 181 APKITSISAERIREELSRILLHPNRVRGFDLLVSSGLMASVLPEILVL------QGCEQP 234 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSM---------AKKFSLPRE----IRYFLISFFN 300 F + D + +++ ++ LS+ AK + R+ IR+ Sbjct: 235 PQFHPEGDVFIHTRIMLGLLPEQVSLSLVWSVLLHDIAKPATFSRDPDGRIRFNGHDKLG 294 Query: 301 CNFNQKTLS---------IPEIKKL--FYLYGD--KVMIAKLKIFLA---------LH-- 336 ++ L P ++ + ++ D K+ I++LK F+A LH Sbjct: 295 AEMAEEILRRLKYPNDVIEPTVEAVANHMVFKDVQKMRISRLKRFMARPGFEDEMELHRV 354 Query: 337 ---YNNLTHQDTCFILQVLSDIIHWKKPLFP---LTGDDVVKYGIPPGKKVGNILVHCKQ 390 +N + FI Q + H PL P + G +++ GIP G +VG +L + Sbjct: 355 DCQSSNGFSDNYDFIRQKQEEFGHDPLPLIPKPLINGHELMSLGIPKGPQVGELLTAVQN 414 Query: 391 EWINSSFQLSQEDL 404 + S+E + Sbjct: 415 LQLEGVLTSSEEAM 428 >gi|283470670|emb|CAQ49881.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus aureus subsp. aureus ST398] Length = 400 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + + I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAAERFQEDALRMIRCLRFQSQLSFE-IATETFEAMRTQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEESFNHL 216 >gi|289168379|ref|YP_003446648.1| tRNA nucleotidyltransferase [Streptococcus mitis B6] gi|288907946|emb|CBJ22786.1| tRNA nucleotidyltransferase [Streptococcus mitis B6] Length = 399 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 109/405 (26%), Positives = 190/405 (46%), Gaps = 31/405 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G A R ED LRI+R FRF A G ++S+ A Sbjct: 130 EIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELESETFKAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A +V M + +L + D+L+++ +E Sbjct: 189 TPLLEKISVERTFVEFDKLLLAPFWRRGLVSMIESQAYD--YLPDMAANQDKLNRLFNLE 246 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + FE + + + ++ + L K + R+ Q L+I Sbjct: 247 TDFTFESSEQAWAALLWALEIENAQPFL---KAWKTSRQF---------AKQVQDLLTIL 294 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPLFPL 365 +++ L K + + L L NL Q QV+++ IH KK + Sbjct: 295 ALREKGEL--SKRDCYRFDLNLLLQAENLRQAQGKEVNPQVITETYQSLTIHDKKEIQIN 352 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++ +H LR+ Sbjct: 353 GGILIKEYGYQPGPDLGEILTEIEYAIVDGELENDRQAIHAYLRE 397 >gi|94994160|ref|YP_602258.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10750] gi|166233884|sp|Q1J760|CCA_STRPF RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|94547668|gb|ABF37714.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS10750] Length = 402 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 122/216 (56%), Gaps = 15/216 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I Sbjct: 14 LPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL + ++ +G A R ED LRI+R FRF A ++D D A+ +A Sbjct: 130 QVIDKFRGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEAATFEA 184 Query: 194 KKG----LKILSSERIWSEINKLLEAKNPLNAIVHM 225 + L+ +S ER ++E +KLL A + I M Sbjct: 185 MRSHSPLLEKISVERSFTEFDKLLMAPHWRKGISAM 220 >gi|160915815|ref|ZP_02078023.1| hypothetical protein EUBDOL_01831 [Eubacterium dolichum DSM 3991] gi|158432291|gb|EDP10580.1| hypothetical protein EUBDOL_01831 [Eubacterium dolichum DSM 3991] Length = 447 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 12/246 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++I ++ ++ +VGG VRD++ + D D+ T LP + +F + ++PT Sbjct: 7 ILDIFAIYEANGYEAFVVGGCVRDAICKRNCHDYDVITNALPQETIALFQQIGLHILPTG 66 Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 ++GT+ +I ++ + +ITT R D I R A + FT+ D RRDFTINA+ Sbjct: 67 FAHGTLTLIYQEHFIEITTYRKEDDYIDHRRPANISFTKSIYEDLKRRDFTINAIAYHPV 126 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID G+ D+ RTI+ +GD + R+ ED LRILR RF A I+ A + Sbjct: 127 HGLIDPFCGIKDIHRRTIRCVGDPNKRMEEDALRILRALRFSAQLS-FTIEEKTWQAILT 185 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + +S ERI +E N+ L + P NA+ H +V E+ L ++ ++ +A Sbjct: 186 HAMDIDYVSKERIQAEFNQYLCSDKP-NAL-HFLRAA-------NVLELILPEMQRIYDA 236 Query: 253 EQVFEW 258 Q W Sbjct: 237 PQPTPW 242 >gi|269302631|gb|ACZ32731.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Chlamydophila pneumoniae LPCoLN] Length = 410 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 125/242 (51%), Gaps = 10/242 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L N G ++ VGG VRD LMN ++DIDIAT P V IF VI +++ Sbjct: 13 LIKLRNAGY-QAYFVGGCVRDMLMNRPLEDIDIATNASPTIVSTIFP----DVISIGVAF 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 G I + + F++ T RSD DGR+ + + D+LRRDFT+N +Y D + KV Sbjct: 68 GIIVVKQDGRLFEVATFRSDGEYKDGRHPDRIIFSSMREDALRRDFTVNGMYYDPFEDKV 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D+V G D+ + I+ IG R ED LRILR RF + G +D A IK Sbjct: 128 FDFVEGTRDIEKKVIRAIGHPRLRFSEDKLRILRAIRFSSSLG-FTLDPTTERAIIKEAP 186 Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L +S ERIW E+ K+L+ + P A+ + + IF ++++I L IE + Sbjct: 187 ALVNSVSPERIWQELKKMLK-RQPHGALSLLLKLKVLIFIFPELRDIPYSLLRTTIEFAR 245 Query: 255 VF 256 F Sbjct: 246 KF 247 >gi|187932836|ref|YP_001885873.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum B str. Eklund 17B] gi|187720989|gb|ACD22210.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum B str. Eklund 17B] Length = 432 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 114/404 (28%), Positives = 198/404 (49%), Gaps = 50/404 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL L ++ IVGG VRDS++N +D DI T P+ V+++F K VI T + + Sbjct: 14 ILDRLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVIKLFDK----VILTGVKH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT R D D R+ K V F + K D RRDFTINA+ ++ + Sbjct: 70 GTVTVLINSEGYEVTTYRMDGEYEDSRHPKKVNFVSNLKEDLARRDFTINAMAYNKVDGL 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 IDY G++DL+ + IK +G++ R ED LR+LR RF + +I ++ L + ++ Sbjct: 130 IDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQLN-FSISNETLNSIKNLRE 188 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---QEISLDQL------ 246 +K +S ERI E NK+L + I + G+ + IF ++ + +D + Sbjct: 189 NIKNISKERIREEFNKILMSNTK--GIDILRETGLMEYIFPEIIKLYDFKIDNMYYNDNL 246 Query: 247 -SQVIEAEQVFE----WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY-------- 293 + I+A + E K+ L ++ ++ +D + + KKF +E +Y Sbjct: 247 YTHTIKATEEIENKLHLKLTMLFHNLLKMNNEDMEYTILQIKKF--LKEFKYDNDTVNKV 304 Query: 294 -FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM--IAKLKIFLALHYNNLTHQDT----C 346 L + + + N K EIK++ L + + K+K L N L ++ Sbjct: 305 TDLTRYMHNSLNTKL----EIKQMLNLINLDLFEDLLKVKESEILSQNPLYKEERLSHLL 360 Query: 347 FILQVLSDIIHWKKPLFPL-----TGDDVVKYGIPPGKKVGNIL 385 +I + L D+I + F L +G D++ G+ GK +G +L Sbjct: 361 YIRENLKDVI-FNNECFNLKDLNISGKDLISLGLEKGKNIGEML 403 >gi|315652418|ref|ZP_07905406.1| poly A polymerase [Eubacterium saburreum DSM 3986] gi|315485317|gb|EFU75711.1| poly A polymerase [Eubacterium saburreum DSM 3986] Length = 400 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 118/407 (28%), Positives = 191/407 (46%), Gaps = 30/407 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ LN+ + VGG VRDSL+N D DI T LP + +IF KT T I++ Sbjct: 12 IIESLNEHGFEGFAVGGCVRDSLLNKIPTDWDITTNALPADIKKIFKKT----FDTGIAH 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++ITT R D TDGR+ V F+++ D RRDFT+NA+ Q + Sbjct: 68 GTVTVLMDGVGYEITTYRIDGDYTDGRHPDSVSFSKNLSEDLCRRDFTVNAMAYSPQKGI 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G DL+ I+ +GDA R ED LR+LR RF + G + D +IK K Sbjct: 128 VDLYKGREDLQKGIIRAVGDAGKRFDEDALRMLRAIRFASQLGFEI--EDNTFEAIKQKA 185 Query: 196 GLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEISLDQLSQVIE 251 L + +S ERI+ E+NKLL N I +Y G+ K I F + + D Sbjct: 186 KLLVNVSKERIFVELNKLLCGDFAQN-IKLIYTSGLCKYIGKEFSKLDKRVYDFYPGKFG 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 ++ W + + + + K ILS K + + Y LIS + + S Sbjct: 245 NKKYMYWAV------FLEDNIEAVKKILSELKSDNATKNNTYLLISELKHSLPE---SDE 295 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNN------LTHQDTCFILQVLSDIIHWKKPLFPL 365 +I+ + G+++ +KI + N ++ C ++L + ++ + + Sbjct: 296 DIRWSLHRLGEELFYDYIKILKSDKRNTDILDRIDELENRC--RRILKEHHAYEISMLDI 353 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 TG D+++ GI G K+G +L + ++ I + L L +K I Sbjct: 354 TGRDLIELGISKGPKIGEVLEYLLKKVIENPSLNDNIKLSKLTKKFI 400 >gi|332523718|ref|ZP_08399970.1| putative tRNA adenylyltransferase [Streptococcus porcinus str. Jelinkova 176] gi|332314982|gb|EGJ27967.1| putative tRNA adenylyltransferase [Streptococcus porcinus str. Jelinkova 176] Length = 403 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/198 (36%), Positives = 113/198 (57%), Gaps = 7/198 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF++T + I + Sbjct: 16 ILKKIKEAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKAIFTRT----VDLGIEH 71 Query: 78 GTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G + Sbjct: 72 GTVLVLEGGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEDGDI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GL+DL+ R ++ +G A R ED LRI+R FRF A + ++ A + Sbjct: 132 IDKFNGLDDLKARRLRAVGKAQDRFEEDALRIMRGFRFAATL-DFTVEETTFCAMTEQAH 190 Query: 196 GLKILSSERIWSEINKLL 213 L +S ERI+ E +KLL Sbjct: 191 LLTKISVERIFIEFDKLL 208 >gi|295104303|emb|CBL01847.1| tRNA nucleotidyltransferase/poly(A) polymerase [Faecalibacterium prausnitzii SL3/3] Length = 444 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 5/185 (2%) Query: 36 VRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR 95 VRDSL+ + D D+ T+ LP +VM +F + IPT + +GT+ I + ++ TT R Sbjct: 30 VRDSLLGRTAHDWDLCTSALPQQVMELFGTE--QCIPTGLQHGTVTIKYGGQLYETTTFR 87 Query: 96 SD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFI 153 ++ TDGR+ +V F D + D RRDFTINA+ + ++D GG DL+N ++ + Sbjct: 88 TEGSYTDGRHPDEVQFVPDVREDLARRDFTINAMAYNAAEGLVDPFGGQKDLQNGLLRAV 147 Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 G+ R ED LRILR +RF A +G + A A L +S+ERI E+ KLL Sbjct: 148 GEPQQRFTEDALRILRLYRFAARFGFALDAATARAARQLAPH-LDCISAERIQEELAKLL 206 Query: 214 EAKNP 218 A P Sbjct: 207 AAPQP 211 >gi|312865315|ref|ZP_07725543.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus downei F0415] gi|311099426|gb|EFQ57642.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus downei F0415] Length = 401 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 106/369 (28%), Positives = 174/369 (47%), Gaps = 32/369 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIATSSYPQETKAIFERT----VDIGIEHGTVLVLENGR 81 Query: 88 YFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R K V F R + D RRDFT+NA + +VID GL DL Sbjct: 82 EYEVTTFRTEDVYVDFRRPKSVSFVRSLEEDLKRRDFTVNAFALAKDAQVIDLFDGLKDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + ++ +G A R ED LRI+R RF A + I+ VA L+ +S ER Sbjct: 142 EAQVLRAVGKAQERFSEDALRIMRGLRFAASL-DFAIEDQTFVAMKTYAPLLEKISVERS 200 Query: 206 WSEINKLLEA---KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 + E +KLL A K L A++ + + L E+ L L + + +F+ + Sbjct: 201 FIEFDKLLTAPHWKKGLEALIEIQAYDYLPD--LSKTEVGLRSLLTDFKDDFLFKTSEQA 258 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + ++ +D +S L K S ++ L++ + NQ K+ Y YG Sbjct: 259 WAALCLSLNIKDCRSFLKKWKTSSHFQKTVSDLVAIYRLRMNQG-----HDKQSIYRYGK 313 Query: 323 KVMIAKLKIFL------ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376 + +A L L A+ ++ + H D +IH KK + G + + G+ Sbjct: 314 E--LAHLAENLRQGQGQAVDFDRIDHLDASL-------LIHHKKDIVVNGGILISQLGLK 364 Query: 377 PGKKVGNIL 385 PG +G IL Sbjct: 365 PGPALGEIL 373 >gi|261406081|ref|YP_003242322.1| polunucleotide adenylyltransferase region [Paenibacillus sp. Y412MC10] gi|261282544|gb|ACX64515.1| Polynucleotide adenylyltransferase region [Paenibacillus sp. Y412MC10] Length = 432 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 100/348 (28%), Positives = 158/348 (45%), Gaps = 25/348 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I +LL G + + VGG VRD M V D+DI T+ LP+ +F K VIPT I + Sbjct: 25 IRTLLRHGHE-AYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFPK----VIPTGIKH 79 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R + D R+ +V F + K D RRDFT+NA+ G Sbjct: 80 GTVTVLMEGQSFEVTTYRVESGYEDHRHPTEVAFVGEVKEDLRRRDFTMNAMARGIDGSW 139 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG D+ + I+ +G+A R ED LR++R RF + +G +I + + Sbjct: 140 VDPFGGREDIDRKVIRCVGEARLRFREDALRMVRCIRFASVFG-FSIALRTWRGILSERD 198 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L ++ ERI SE K+L +PL + G+ + + D+ + IEA + Sbjct: 199 TLGWIAMERIRSEFEKILAGPSPLRGLEMFVRSGLHSRMKAPFPYTTHDR--KTIEAMER 256 Query: 256 FE-------WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 E W SLL + Q + +L + RE L+S Q Sbjct: 257 IEPDHATIRW---SLLLLACGTTAQQAEELLRSWTFSNKQRESIVKLLSLHESYLQQPNA 313 Query: 309 SIPEIKKLFYL-----YGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351 E +L ++ YG + L++ ALH+ + FI Q+ Sbjct: 314 GDAESSRLKWISLVLAYGVEAAQGWLEMQTALHHAGASSAPLTFIRQL 361 >gi|160895413|ref|ZP_02076182.1| hypothetical protein CLOL250_02970 [Clostridium sp. L2-50] gi|156862915|gb|EDO56346.1| hypothetical protein CLOL250_02970 [Clostridium sp. L2-50] Length = 473 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 118/219 (53%), Gaps = 16/219 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L ++ IVGG VRDS++ D DI T P++V +F +T I T I + Sbjct: 39 VIETLEAAGYEAYIVGGCVRDSILGREPGDWDITTAARPEQVKALFRRT----IDTGIKH 94 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQ 131 GT+ ++ K+ +++TT R DG Y+ V FT + + D RRDFTINA+ Sbjct: 95 GTVTVMFGKEAYEVTTYR----VDGEYSDHRRPDSVEFTANLEEDLKRRDFTINAMAYSP 150 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 VID GG++DL N+ IK +GD R ED LRILR RF + I+ D A I Sbjct: 151 SAGVIDLFGGMDDLDNKVIKAVGDPLARFDEDALRILRAIRFAGQL-DFTIERDTRKAMI 209 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + L+ +S+ERI E++KLL + +P ++ Y GI Sbjct: 210 LRAQFLQDISAERIRVELDKLLTSAHP-EKLMEAYVTGI 247 >gi|293365842|ref|ZP_06612547.1| tRNA adenylyltransferase [Streptococcus oralis ATCC 35037] gi|322375606|ref|ZP_08050118.1| polyA polymerase [Streptococcus sp. C300] gi|291315666|gb|EFE56114.1| tRNA adenylyltransferase [Streptococcus oralis ATCC 35037] gi|321279314|gb|EFX56355.1| polyA polymerase [Streptococcus sp. C300] Length = 399 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 113/200 (56%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 130 EIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEQETFEAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLL 213 L+ +S ER + E +KLL Sbjct: 189 TPLLEKISVERTFVEFDKLL 208 >gi|294784658|ref|ZP_06749947.1| poly(A) polymerase [Fusobacterium sp. 3_1_27] gi|294487874|gb|EFG35233.1| poly(A) polymerase [Fusobacterium sp. 3_1_27] Length = 451 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 120/225 (53%), Gaps = 13/225 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ Y T Sbjct: 14 IEILNKLNKY-GKGYIVGGAIRDILLGLKPKDVDFTTNLPYGTLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLIT--DG-----RYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D DG KV F D + D RRDFTINA+ Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 +Q+ +ID G D+ NR I F+G A RI+ED LR+LR FRF + K S+ V Sbjct: 131 YNQKEGIIDLYNGQKDIENRIINFVGKAEERIIEDPLRVLRAFRFMSRL--KFSLSENTV 188 Query: 189 ASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +IK +K LK +S ERI E +KLL +N N + M + G+ + Sbjct: 189 EAIKKQKELLKNISEERITMEFSKLLLGENIKNTLTLMKDTGVLE 233 >gi|259046862|ref|ZP_05737263.1| poly A polymerase [Granulicatella adiacens ATCC 49175] gi|259036485|gb|EEW37740.1| poly A polymerase [Granulicatella adiacens ATCC 49175] Length = 409 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 15/221 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L K ++ VGG+VRD ++ + D+DIAT+ P+ V +FS T + I + Sbjct: 22 VLQTLKKAGHEAVFVGGSVRDLVLGKEISDVDIATSATPEEVKSLFSHT----VDVGIEH 77 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQ 131 GT+ +I + +++TT R T+G Y V F R + D +RRDFTINAL + Sbjct: 78 GTVLVIYHQDSYEVTTFR----TEGTYQDFRHPDSVTFVRSLEEDLMRRDFTINALAIND 133 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 Q +++DY GL DL N I+ +G+ R ED LR++R RF G I+S A Sbjct: 134 QEEIVDYFDGLKDLENSIIRCVGNPMERFNEDALRMMRAIRFAGQLG-FTIESKTFNAIR 192 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 K L+ ++ ER+ E K++ + + NA + +++ Sbjct: 193 VLKSNLERVAVERMKVEFEKMIVSLHRSNAFLAFIESDLYQ 233 >gi|21283076|ref|NP_646164.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus MW2] gi|49486297|ref|YP_043518.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus MSSA476] gi|73619859|sp|Q6G9A5|CCA_STAAS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619861|sp|Q8NWP0|CCA_STAAW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|21204516|dbj|BAB95212.1| MW1347 [Staphylococcus aureus subsp. aureus MW2] gi|49244740|emb|CAG43176.1| poly A polymerase family protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 400 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRIQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEKSFNHL 216 >gi|262051628|ref|ZP_06023848.1| hypothetical protein SA930_1905 [Staphylococcus aureus 930918-3] gi|259160469|gb|EEW45493.1| hypothetical protein SA930_1905 [Staphylococcus aureus 930918-3] Length = 400 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNAENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRIQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEKSFNHL 216 >gi|307703289|ref|ZP_07640234.1| RNA nucleotidyltransferase [Streptococcus oralis ATCC 35037] gi|307623155|gb|EFO02147.1| RNA nucleotidyltransferase [Streptococcus oralis ATCC 35037] Length = 394 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 113/200 (56%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEQETFEAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLL 213 L+ +S ER + E +KLL Sbjct: 184 TPLLEKISVERTFVEFDKLL 203 >gi|307068199|ref|YP_003877165.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus pneumoniae AP200] gi|306409736|gb|ADM85163.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus pneumoniae AP200] Length = 399 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 110/409 (26%), Positives = 197/409 (48%), Gaps = 39/409 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 130 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 189 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 246 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 247 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 295 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI 349 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GD ++K YG PG +G IL + ++ + ++E +H LR+ Sbjct: 350 -QINGDILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|224532099|ref|ZP_03672731.1| polynucleotide adenylyltransferase [Borrelia valaisiana VS116] gi|224511564|gb|EEF81970.1| polynucleotide adenylyltransferase [Borrelia valaisiana VS116] Length = 410 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 113/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A KV +T++ D RRDFTINA+ D +IDY G DL Sbjct: 82 ITTYRIEKEYENNRAPKKVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDYYDGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + I+S ERI + Sbjct: 142 KIIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILIISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGTNIQKGIYYLKKVDFFKNFF 228 >gi|322806644|emb|CBZ04213.1| tRNA nucleotidyltransferase [Clostridium botulinum H04402 065] Length = 450 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 3/207 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK++PT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIVPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R K V FT + + D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLREDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +S L K + Sbjct: 137 VDYFYGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFCMEESIKLNIR-KLSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 + +S ERI E+ K+L + P+ I Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGI 222 >gi|222152919|ref|YP_002562096.1| tRNA CCA-pyrophosphorylase [Streptococcus uberis 0140J] gi|254813700|sp|B9DRX9|CCA_STRU0 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|222113732|emb|CAR41700.1| CCA-adding enzyme [Streptococcus uberis 0140J] Length = 403 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 114/204 (55%), Gaps = 7/204 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + + ++ VGG VRD L++ + D+DIAT+ P+ IFS+T + I Sbjct: 14 LPILKKIKEAGFEAYFVGGGVRDILLDRPIHDVDIATSSYPEETKAIFSRT----VDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R + V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLENDAEYEITTFRTEDIYVDYRRPSNVSFVRSLEEDLKRRDFTVNALALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL+ + ++ +G A R ED LRI+R FRF A K I+ + A Sbjct: 130 QVIDKFHGLQDLKRKELRAVGKAEERFQEDALRIMRGFRFAASLDFK-IEDETFEAMKTH 188 Query: 194 KKGLKILSSERIWSEINKLLEAKN 217 L+ +S ER + E++KL A N Sbjct: 189 AHLLQKISVERSFIELDKLFMAPN 212 >gi|257795487|ref|ZP_05644466.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9781] gi|258413296|ref|ZP_05681572.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9763] gi|258420597|ref|ZP_05683539.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9719] gi|258426793|ref|ZP_05688013.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A9299] gi|258444791|ref|ZP_05693120.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A8115] gi|258447375|ref|ZP_05695519.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A6300] gi|258449740|ref|ZP_05697841.1| polynucleotide adenylyltransferase [Staphylococcus aureus A6224] gi|258454591|ref|ZP_05702555.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A5937] gi|282892953|ref|ZP_06301188.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A8117] gi|282927984|ref|ZP_06335593.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus A10102] gi|147741012|gb|ABQ49310.1| Polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus JH9] gi|149946458|gb|ABR52394.1| Polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus JH1] gi|257789459|gb|EEV27799.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9781] gi|257839860|gb|EEV64328.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9763] gi|257843545|gb|EEV67952.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9719] gi|257849954|gb|EEV73912.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A9299] gi|257850284|gb|EEV74237.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A8115] gi|257853566|gb|EEV76525.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A6300] gi|257856988|gb|EEV79888.1| polynucleotide adenylyltransferase [Staphylococcus aureus A6224] gi|257862974|gb|EEV85738.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A5937] gi|282590281|gb|EFB95361.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus A10102] gi|282764950|gb|EFC05075.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A8117] Length = 411 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I + A +K LS ERI E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIAMETFEAMRTQMADIKFLSIERIVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEESFNHL 227 >gi|315129172|gb|EFT85167.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus CGS03] Length = 400 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I + A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIAMETFEAMRTQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEESFNHL 216 >gi|57650412|ref|YP_186341.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus COL] gi|151221580|ref|YP_001332402.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus str. Newman] gi|161353526|ref|YP_499992.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509625|ref|YP_001575284.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|162138558|ref|YP_494045.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|262048981|ref|ZP_06021860.1| hypothetical protein SAD30_1259 [Staphylococcus aureus D30] gi|284024456|ref|ZP_06378854.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus 132] gi|294848421|ref|ZP_06789167.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9754] gi|73619848|sp|Q5HFW6|CCA_STAAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|172048887|sp|A6QH08|CCA_STAAE RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|189081881|sp|A8Z437|CCA_STAAT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|57284598|gb|AAW36692.1| polyA polymerase [Staphylococcus aureus subsp. aureus COL] gi|150374380|dbj|BAF67640.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368434|gb|ABX29405.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162913|gb|EEW47476.1| hypothetical protein SAD30_1259 [Staphylococcus aureus D30] gi|269940950|emb|CBI49334.1| poly A polymerase family protein [Staphylococcus aureus subsp. aureus TW20] gi|294824447|gb|EFG40870.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9754] gi|302751288|gb|ADL65465.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315197797|gb|EFU28131.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus CGS01] gi|329314134|gb|AEB88547.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus T0131] gi|329723189|gb|EGG59720.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus aureus subsp. aureus 21189] Length = 400 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRIQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEKSFNHL 216 >gi|28378528|ref|NP_785420.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum WCFS1] gi|308180685|ref|YP_003924813.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|73619787|sp|Q88W02|CCA_LACPL RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|28271364|emb|CAD64269.1| polynucleotide adenylyltransferase [Lactobacillus plantarum WCFS1] gi|308046176|gb|ADN98719.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 407 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 111/410 (27%), Positives = 182/410 (44%), Gaps = 51/410 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRD+++ + D+DIAT+ P V ++F +T + T I +GT+ I+ Sbjct: 26 EAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFKRT----VDTGIEHGTVMILDHGN 81 Query: 88 YFDITTLRSDLITDG-----RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++ TT R++ G R +V F R K D RRDFTINAL G+VID GL Sbjct: 82 GYETTTFRTE---SGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTANGEVIDLFDGL 138 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 D+ ++ +G A R ED LR++R RF + G I+S A L ++ Sbjct: 139 ADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLG-FTIESQTEQAIADNAALLAKIAV 197 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEWKID 261 ER E KLL ++P+ + + +++ + + QE L QL + W + Sbjct: 198 ERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYMPAMADQEAMLRQLMALP------AWHLP 251 Query: 262 SLLRFIVLISW----QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 S+ L+SW D+ ++ + K + E+ N T + IK L Sbjct: 252 SIESTWTLLSWTMQRTDEAAVRQLLKTWKTSNEL-----------INHVTAA---IKALM 297 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTH---------QDTCFILQVLSDI-IHWKKPLFPLTG 367 L + + A+ + L + QD ++Q + + IH K L + G Sbjct: 298 ALKHNGQLTAQENFYTGLEALKTANQVATILGFGQDQAQLVQSYASLPIHDKHEL-AING 356 Query: 368 DDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 D++K + PG +G IL C Q + Q+ L R ++A S+ Sbjct: 357 GDLLKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405 >gi|15924447|ref|NP_371981.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus Mu50] gi|15927038|ref|NP_374571.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus N315] gi|156979776|ref|YP_001442035.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus Mu3] gi|162036297|ref|YP_001246886.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus JH9] gi|162077203|ref|YP_001316681.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus JH1] gi|253315966|ref|ZP_04839179.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006244|ref|ZP_05144845.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269203082|ref|YP_003282351.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus ED98] gi|295407207|ref|ZP_06817007.1| tRNA nucleotidyltransferase [Staphylococcus aureus A8819] gi|296275345|ref|ZP_06857852.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus MR1] gi|297244631|ref|ZP_06928514.1| CCA-adding enzyme [Staphylococcus aureus A8796] gi|73619851|sp|Q99U32|CCA_STAAM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619853|sp|Q7A5K2|CCA_STAAN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233880|sp|A7X2F4|CCA_STAA1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|13701255|dbj|BAB42550.1| SA1290 [Staphylococcus aureus subsp. aureus N315] gi|14247228|dbj|BAB57619.1| putative poly(A) polymerase [Staphylococcus aureus subsp. aureus Mu50] gi|156721911|dbj|BAF78328.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|262075372|gb|ACY11345.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus ED98] gi|285817137|gb|ADC37624.1| tRNA nucleotidyltransferase [Staphylococcus aureus 04-02981] gi|294967920|gb|EFG43949.1| tRNA nucleotidyltransferase [Staphylococcus aureus A8819] gi|297178661|gb|EFH37907.1| CCA-adding enzyme [Staphylococcus aureus A8796] gi|312829849|emb|CBX34691.1| poly A polymerase head domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329727606|gb|EGG64062.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329731308|gb|EGG67674.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus aureus subsp. aureus 21193] Length = 400 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 26 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 81 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 82 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I + A +K LS ERI E+ Sbjct: 142 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIAMETFEAMRTQMADIKFLSIERIVIEL 200 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 201 TKLMRGINVEESFNHL 216 >gi|253577530|ref|ZP_04854843.1| polynucleotide adenylyltransferase region [Paenibacillus sp. oral taxon 786 str. D14] gi|251843070|gb|EES71105.1| polynucleotide adenylyltransferase region [Paenibacillus sp. oral taxon 786 str. D14] Length = 202 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 11/187 (5%) Query: 3 SIVQHKWFHDSDLI-----NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 +I +H W L+ +L +L G ++ VGG VRD LM V D+DIAT+ PD Sbjct: 13 AIEKHHWSQVDPLMLAQGERVLRILRDGGHQAFFVGGCVRDELMGRPVHDMDIATSAKPD 72 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKA 115 V+R+F +T IPT I +GT+ ++ F++TT R SD R V F Sbjct: 73 EVVRLFERT----IPTGIQHGTVTVMMGDHAFEVTTFRKESDYADFRRPTSVEFVDAVTE 128 Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D RRDFT+NA+ +G++ID GG D+ I+ +GDA R ED LR++R RF + Sbjct: 129 DLRRRDFTMNAIARGLEGELIDPFGGRMDIERGLIRCVGDAKERFAEDALRMMRAVRFAS 188 Query: 176 HYGEKNI 182 +G + + Sbjct: 189 TFGFRPV 195 >gi|227432250|ref|ZP_03914246.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352023|gb|EEJ42253.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 401 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 113/205 (55%), Gaps = 10/205 (4%) Query: 14 DLINILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + I+ +L K ED ++ VGG+VRD+++ ++ D+DIA++ P+ V +F T Sbjct: 9 EFIDAQPILTKLEDAGFEAYFVGGSVRDTMLGKTIHDVDIASSAFPEEVKSLFHNT---- 64 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALY 128 + T I +GT+ ++ ++ITT R + TD R V F R + D RRDFTINAL Sbjct: 65 VDTGIQHGTVMVLDHGTGYEITTFRVESTYTDFRRPDHVTFVRSLEEDLKRRDFTINALA 124 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+V+D GL D++ I+ +G+A R ED LR++R RF A G NI++D Sbjct: 125 MRHDGEVLDLFDGLEDMKKGVIRAVGNAEKRFTEDALRMMRALRFSAQLG-FNIEADTQK 183 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + L ++ ER+ E KLL Sbjct: 184 ALVDLAPNLAKIAVERVRVEFEKLL 208 >gi|148997378|ref|ZP_01824983.1| polyA polymerase family protein [Streptococcus pneumoniae SP11-BS70] gi|168575248|ref|ZP_02721211.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae MLV-016] gi|169834239|ref|YP_001694961.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae Hungary19A-6] gi|147756433|gb|EDK63474.1| polyA polymerase family protein [Streptococcus pneumoniae SP11-BS70] gi|168996741|gb|ACA37353.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae Hungary19A-6] gi|183578709|gb|EDT99237.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae MLV-016] gi|301794565|emb|CBW37009.1| CCA-adding enzyme [Streptococcus pneumoniae INV104] gi|301800387|emb|CBW33018.1| CCA-adding enzyme [Streptococcus pneumoniae OXC141] Length = 394 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 110/409 (26%), Positives = 197/409 (48%), Gaps = 39/409 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GD ++K YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 -QINGDILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|297207883|ref|ZP_06924316.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911968|ref|ZP_07129411.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|296887457|gb|EFH26357.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886214|gb|EFK81416.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus TCH70] Length = 411 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRIQMADIKFLSIERIVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEKSFNHL 227 >gi|253733296|ref|ZP_04867461.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|258451115|ref|ZP_05699150.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A5948] gi|282921703|ref|ZP_06329420.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9765] gi|304380961|ref|ZP_07363619.1| polyA polymerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253728836|gb|EES97565.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257861170|gb|EEV83983.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A5948] gi|282593965|gb|EFB98954.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9765] gi|304340486|gb|EFM06422.1| polyA polymerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320142702|gb|EFW34505.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 411 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRIQMADIKFLSIERIVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEKSFNHL 227 >gi|295094343|emb|CBK83434.1| uncharacterized domain HDIG [Coprococcus sp. ART55/1] Length = 443 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 116/209 (55%), Gaps = 16/209 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRDS++ D DI T+ P++V IF +T + T I +GT+ ++ K+ Sbjct: 22 EAYIVGGCVRDSILGREPGDWDITTSARPEQVKEIFRRT----VDTGIEHGTVTVMMGKE 77 Query: 88 YFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 +++TT R DG Y+ +V FT + D RRDFTINA+ +ID GG Sbjct: 78 GYEVTTYR----IDGEYSDHRRPDQVEFTASLEEDLKRRDFTINAMAYSHSKGIIDMFGG 133 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + DL ++ I+ +G A R ED LRILR RF G +I+ D A I + LK +S Sbjct: 134 VQDLNDKVIRAVGVARDRFDEDALRILRAIRFAGQLG-FDIERDTRKAMIIQAQYLKDIS 192 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGI 230 +ERI E+ KLL + +P + ++ Y GI Sbjct: 193 AERIRVELTKLLVSDHP-DKLLEAYVTGI 220 >gi|237741122|ref|ZP_04571603.1| poly(a) polymerase [Fusobacterium sp. 4_1_13] gi|229430654|gb|EEO40866.1| poly(a) polymerase [Fusobacterium sp. 4_1_13] Length = 451 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 124/226 (54%), Gaps = 15/226 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKVIPTS 74 I IL+ LNK K IVGGA+RD L+ L +D+D TT LP R ++ +FS+ Y T Sbjct: 14 IKILNKLNKY-GKGYIVGGAIRDILLGLKPKDVDF-TTNLPYRTLKTLFSE--YTPKETG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT--DG-----RYAKVVFTRDWKADSLRRDFTINAL 127 S+G ++I ++I R D DG KV F D + D RRDFTINA+ Sbjct: 70 KSFGVLRIRIDNTDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAM 129 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +Q+ +ID G D+ N+ I F+G+A RI+ED LR+LR FRF + K S+ Sbjct: 130 AYNQKEGIIDLYNGQKDIENKIINFVGNAEERIIEDPLRVLRAFRFMSRL--KFSLSENT 187 Query: 188 VASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + +IK +K LK + ERI E +KLL +N N + M + G+ + Sbjct: 188 IEAIKKQKELLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLE 233 >gi|295398917|ref|ZP_06808899.1| Polynucleotide adenylyltransferase region [Geobacillus thermoglucosidasius C56-YS93] gi|294978383|gb|EFG53979.1| Polynucleotide adenylyltransferase region [Geobacillus thermoglucosidasius C56-YS93] Length = 404 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 111/202 (54%), Gaps = 7/202 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I+ L K ++ VGGAVRD L+ ++ D+DIAT+ LP VM++F KT I Sbjct: 9 LGIIRQLKKHGYEAYFVGGAVRDLLLKRNIGDVDIATSALPHEVMQLFPKT----IDIGS 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ +I +++TT R+D + R V F R D RRDFT+NA+ D+ G Sbjct: 65 QHGTVVVIHDGIPYEVTTFRADGNYEDHRRPESVTFVRSLYEDLKRRDFTMNAIAMDEAG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 K+ID GG + + NR I +GD R ED LR++R RF + G ++D + A I+ Sbjct: 125 KLIDPFGGQDAITNRMICTVGDPKERFSEDALRMMRAIRFVSQLG-FSLDEETKQAIIEN 183 Query: 194 KKGLKILSSERIWSEINKLLEA 215 L +S ER+ E KLLE Sbjct: 184 APLLAHISVERMTMEFEKLLEG 205 >gi|312110476|ref|YP_003988792.1| polynucleotide adenylyltransferase region [Geobacillus sp. Y4.1MC1] gi|311215577|gb|ADP74181.1| Polynucleotide adenylyltransferase region [Geobacillus sp. Y4.1MC1] Length = 404 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 111/202 (54%), Gaps = 7/202 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I+ L K ++ VGGAVRD L+ ++ D+DIAT+ LP VM++F KT I Sbjct: 9 LGIIRQLKKHGYEAYFVGGAVRDLLLKRNIGDVDIATSALPHEVMQLFPKT----IDIGS 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ +I +++TT R+D + R V F R D RRDFT+NA+ D+ G Sbjct: 65 QHGTVVVIHDGIPYEVTTFRADGNYEDHRRPESVTFVRSLYEDLKRRDFTMNAIAMDEAG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 K+ID GG + + NR I +GD R ED LR++R RF + G ++D + A I+ Sbjct: 125 KLIDPFGGQDAITNRMICTVGDPKERFSEDALRMMRAIRFVSQLG-FSLDEETKQAIIEN 183 Query: 194 KKGLKILSSERIWSEINKLLEA 215 L +S ER+ E KLLE Sbjct: 184 APLLAHISVERMTMEFEKLLEG 205 >gi|291551157|emb|CBL27419.1| uncharacterized domain HDIG [Ruminococcus torques L2-14] Length = 446 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 107/189 (56%), Gaps = 7/189 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++ QD DI T+ P+ + IF +T + T I +GT+ ++ K +++ Sbjct: 26 VGGCVRDSILARKPQDWDITTSAKPEAIKEIFRRT----VDTGIEHGTVTVMIGKDSYEV 81 Query: 92 TTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT + D RRDFTINA+ + +++D GG+ DL + Sbjct: 82 TTYRIDGAYEDSRHPKEVRFTNCLEEDLRRRDFTINAMAYNDDVRLVDVFGGMQDLNHHL 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +GD R ED LRILR RF A + I+ D A + LK +S+ERI +E+ Sbjct: 142 IRCVGDPRERFSEDALRILRAVRFSAQL-DFPIEPDTAKAVKELAPNLKNISAERIQTEL 200 Query: 210 NKLLEAKNP 218 KLL + +P Sbjct: 201 VKLLTSPHP 209 >gi|224437602|ref|ZP_03658555.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818] gi|313144052|ref|ZP_07806245.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818] gi|313129083|gb|EFR46700.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818] Length = 465 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 115/215 (53%), Gaps = 24/215 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLM-------------NLSVQ----DIDIATTILPDRVM 60 ILS L K+ IVGG VRD ++ +L+ Q D DIAT+ LP V+ Sbjct: 22 ILSQLQMSGYKAYIVGGCVRDMILHTLECSDNAGLKSDLAYQNLPSDYDIATSALPSEVI 81 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSL 118 R+F +T IPT + +GTI +I K ++I+T R + + A V FT + + D Sbjct: 82 RLFPRT----IPTGLKHGTISVIYDNKIYEISTFRIEGAYSNKRAPDSVRFTTELEQDLQ 137 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFT+NAL +ID VGGL D+ NR I +G+AH R ED LRILR RF A Sbjct: 138 RRDFTMNALAYSPHTGLIDKVGGLRDIINRKIVCVGEAHLRFNEDALRILRVLRFAATL- 196 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 + I+S A + K L +S ERI E+ KLL Sbjct: 197 DFEIESHTDSALRECAKNLCYISKERIKDELTKLL 231 >gi|322387336|ref|ZP_08060946.1| polyA polymerase family protein [Streptococcus infantis ATCC 700779] gi|321141865|gb|EFX37360.1| polyA polymerase family protein [Streptococcus infantis ATCC 700779] Length = 399 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+++N + D+DIAT+ P+ +IF +T I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDAILNRPIHDVDIATSSYPEETKQIFPRT----ADIGIEHGTVLVLDGDE 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R + D RRDFT+NA D+ GK++D GL DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDETGKIVDLFDGLRDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ ++ +G A R ED LRI+R FRF A G ++ + A L +S ERI Sbjct: 142 ENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEQETFEAMKALTPLLDKISVERI 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FVEFDKLLLA 210 >gi|317058679|ref|ZP_07923164.1| poly(a) polymerase [Fusobacterium sp. 3_1_5R] gi|313684355|gb|EFS21190.1| poly(a) polymerase [Fusobacterium sp. 3_1_5R] Length = 438 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 116/203 (57%), Gaps = 4/203 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD L+ V D D T + + + +IFSK Y I T ++G +++ + F+ Sbjct: 27 LVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK--YFCIETGKAFGVLRLRIDGEEFE 84 Query: 91 ITTLRSDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 I + RS+ +DGR + V+F + + D RRDF+INA+ +Q+ ++DY DL N+ Sbjct: 85 IASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSINAMAYNQEKGLLDYYDAQKDLENKV 144 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+FIG+ RI ED LRI+R FRF + G +++S+ A ++ ++ L ++ RI E Sbjct: 145 IRFIGNPRERIQEDGLRIMRAFRFMSQLG-FSLESNTKKAIMEEREMLGKIAKSRITEEW 203 Query: 210 NKLLEAKNPLNAIVHMYNGGIFK 232 NKL+ + + M G+ + Sbjct: 204 NKLILGDFVVETLEEMKETGVLE 226 >gi|34763233|ref|ZP_00144196.1| POLY(A) POLYMERASE; TRNA NUCLEOTIDYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887113|gb|EAA24221.1| POLY(A) POLYMERASE; TRNA NUCLEOTIDYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 451 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 119/224 (53%), Gaps = 11/224 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ Y T Sbjct: 14 IKILNKLNKY-GKGYIVGGAIRDILLGLKPKDVDFTTNLPYGTLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLIT--DG-----RYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D DG KV F D + D RRDFTINA+ Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 +Q+ +ID G D+ NR I F+G + RI+ED LR+LR FRF + ++ + + Sbjct: 131 YNQKEGIIDLYNGQKDIENRIINFVGKSEERIIEDPLRVLRAFRFMSRLN-FSLSENTIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 A K K+ LK +S ERI E +KLL KN N + M + G+ + Sbjct: 190 AIKKQKELLKNISEERITMEFSKLLLGKNIKNTLTLMKDTGVLE 233 >gi|220929703|ref|YP_002506612.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium cellulolyticum H10] gi|220000031|gb|ACL76632.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium cellulolyticum H10] Length = 448 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 19/209 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ LN+ + +VGG VRDS++ + D DI T LP + IF +T T I + Sbjct: 16 VIKKLNEAGYDAYLVGGCVRDSILCKAPYDWDITTNALPIDIKSIFDRT----YDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINAL-YAD 130 GT+ ++ + ++TT R DG Y KV FT + D RRDFTINA+ Y Sbjct: 72 GTVTVLIGEMCLEVTTYR----IDGDYKDFRRPDKVEFTSSLREDLARRDFTINAMAYHP 127 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +QG ++D+ GGL DL+ R IK +GD R ED LR++R RF A G + + + Sbjct: 128 EQG-LVDFFGGLQDLKKRIIKAVGDPEQRFREDALRMMRAIRFSAQLGFEI--EEATFEA 184 Query: 191 IKAKKGL-KILSSERIWSEINKLLEAKNP 218 IK+ L +SSERI E+NK L ++NP Sbjct: 185 IKSNSALIANISSERIRDELNKTLVSENP 213 >gi|315646461|ref|ZP_07899579.1| Polynucleotide adenylyltransferase region [Paenibacillus vortex V453] gi|315278104|gb|EFU41424.1| Polynucleotide adenylyltransferase region [Paenibacillus vortex V453] Length = 434 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 8/219 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I +LL G + + VGG VRD M V D+DI T+ LP+ +F K V+PT I + Sbjct: 25 IRTLLQHGYE-AYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFPK----VVPTGIKH 79 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R + D R+ +V F RD K D RRDFT+NA+ G Sbjct: 80 GTVTVLMEGQAFEVTTYRVESGYEDHRHPTEVAFVRDVKEDLTRRDFTMNAMARGIDGSW 139 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG D+ + I+ +GDA R ED LR++R RF + +G +I + + Sbjct: 140 VDPFGGREDIDKQVIRCVGDARLRFREDALRMVRCIRFASVFG-FSIALHTWKGILSERD 198 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L ++ ERI SE K++ PL + G++ + Sbjct: 199 TLSWIAMERIRSEFEKIMTGPTPLRGLEMFLRSGLYSRM 237 >gi|225620332|ref|YP_002721589.1| polyA polymerase [Brachyspira hyodysenteriae WA1] gi|225215151|gb|ACN83885.1| polyA polymerase [Brachyspira hyodysenteriae WA1] Length = 464 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 8/213 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRDS+M ++ + DI T P+ V RIF T IPT I +GTI +I + + Sbjct: 28 LVGGAVRDSIMGITPHEYDITTDARPEDVQRIFKYT----IPTGIKHGTILVIIEDMHVE 83 Query: 91 ITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRN 147 ITT RSD +DGR+ V + + D RRD TINA+ Y G +ID G+ D++ Sbjct: 84 ITTFRSDGNYSDGRHPDHVEYATSIEEDLPRRDLTINAMAYNILDGSLIDMFDGMKDIKK 143 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + +K +G+ + R ED LRI+R R FA + +I+ + A + L +++ERI Sbjct: 144 KIVKSVGNPYERFSEDGLRIMRAIR-FATKLDFDIEKETFDAITHSTGMLASIAAERIRE 202 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 E N +L +KNP + + G+ I ++ + Sbjct: 203 EFNGILLSKNPFRGLELLRKTGVLSLILPELMQ 235 >gi|332686557|ref|YP_004456331.1| tRNA nucleotidyltransferase [Melissococcus plutonius ATCC 35311] gi|332370566|dbj|BAK21522.1| tRNA nucleotidyltransferase [Melissococcus plutonius ATCC 35311] Length = 410 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ I+ + KG ++ VGG+VRD L+N + D+DIA++ P+ + ++F +T I Sbjct: 11 TEATPIIKKIQKGGYEAYFVGGSVRDVLLNKPIHDVDIASSAYPEEIKQLFRRT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ K ++ITT R++ R V F R D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLHGSKQYEITTFRTESTYQDFRRPDTVTFVRSLSEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G+VID G++D+ N+ I+ +GD R ED LR++R RF + + I+ L Sbjct: 127 RSGQVIDQFDGISDIENKVIRAVGDPKARFHEDALRMMRALRFASQL-DFQIEEKTLAGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKN 217 L+ +S ERI E K+L KN Sbjct: 186 SAFHFLLEKVSVERITIEFVKMLLGKN 212 >gi|257452134|ref|ZP_05617433.1| Poly(A) polymerase [Fusobacterium sp. 3_1_5R] Length = 444 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 116/203 (57%), Gaps = 4/203 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD L+ V D D T + + + +IFSK Y I T ++G +++ + F+ Sbjct: 33 LVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK--YFCIETGKAFGVLRLRIDGEEFE 90 Query: 91 ITTLRSDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 I + RS+ +DGR + V+F + + D RRDF+INA+ +Q+ ++DY DL N+ Sbjct: 91 IASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSINAMAYNQEKGLLDYYDAQKDLENKV 150 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+FIG+ RI ED LRI+R FRF + G +++S+ A ++ ++ L ++ RI E Sbjct: 151 IRFIGNPRERIQEDGLRIMRAFRFMSQLG-FSLESNTKKAIMEEREMLGKIAKSRITEEW 209 Query: 210 NKLLEAKNPLNAIVHMYNGGIFK 232 NKL+ + + M G+ + Sbjct: 210 NKLILGDFVVETLEEMKETGVLE 232 >gi|328948084|ref|YP_004365421.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Treponema succinifaciens DSM 2489] gi|328448408|gb|AEB14124.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Treponema succinifaciens DSM 2489] Length = 467 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 14/225 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 LI + + + KS +VGGAVRD LM + D DIAT P++VM+IF V+PT Sbjct: 13 LIKVSKIFSDNGFKSYLVGGAVRDMLMGKTCHDYDIATNATPEQVMKIFR----NVVPTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-Q 131 I++GT+ I + TT R++ +DGR+ KV + + D RRDFT+NA+ A+ Sbjct: 69 IAHGTVTIHIFGLELETTTFRTETDYSDGRHPDKVKYAETIEEDLSRRDFTMNAIAAELS 128 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGL 187 GK+ D G D++ + I+ +GD R ED LR +R RF G EK D+ Sbjct: 129 TGKITDPFDGQKDIQRKIIRTVGDPFERFSEDGLRPVRAIRFSGQLGFEIEEKTFDA--- 185 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 ++ K K ++ +S+ER E K+L+ + P + + G+ K Sbjct: 186 ISQEKILKKVEGISTERFRDEFCKILKTEKPSVGLKLLEQTGMLK 230 >gi|307127766|ref|YP_003879797.1| CCA-adding enzyme [Streptococcus pneumoniae 670-6B] gi|306484828|gb|ADM91697.1| CCA-adding enzyme [Streptococcus pneumoniae 670-6B] Length = 394 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 109/409 (26%), Positives = 194/409 (47%), Gaps = 39/409 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWATLLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPL 362 ++ E +L K + I L L NL + S IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQARGKEVNPQAITEKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GD ++K YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 -QINGDILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|257466072|ref|ZP_05630383.1| Poly(A) polymerase [Fusobacterium gonidiaformans ATCC 25563] gi|315917228|ref|ZP_07913468.1| poly(a) polymerase [Fusobacterium gonidiaformans ATCC 25563] gi|313691103|gb|EFS27938.1| poly(a) polymerase [Fusobacterium gonidiaformans ATCC 25563] Length = 446 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 115/203 (56%), Gaps = 4/203 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD L+ V D D T + + + +IFSK Y I T ++G +++ + F+ Sbjct: 27 LVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK--YFCIETGKAFGVLRLRIDGEEFE 84 Query: 91 ITTLRSDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 I + RS+ +DGR + V+F + + D RRDF+INA+ +Q+ ++DY DL N+ Sbjct: 85 IASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSINAMAYNQEKGLLDYYDAQKDLENKV 144 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+FIG+ RI ED LRI+R FRF + G +++S+ A ++ K L ++ RI E Sbjct: 145 IRFIGNPRERIQEDGLRIMRAFRFMSQLG-FSLESNTKKAIMEEKGMLGKIAKSRITEEW 203 Query: 210 NKLLEAKNPLNAIVHMYNGGIFK 232 NKL+ + + M G+ + Sbjct: 204 NKLILGDFVVETLEEMKKTGVLE 226 >gi|320140371|gb|EFW32227.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus aureus subsp. aureus MRSA131] Length = 411 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD +M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++ Sbjct: 37 VGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEV 92 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 93 TTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRI 152 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR++R RF + +I ++ A +K LS ER+ E+ Sbjct: 153 IRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRIQMADIKFLSIERMVIEL 211 Query: 210 NKLLEAKNPLNAIVHM 225 KL+ N + H+ Sbjct: 212 TKLMRGINVEKSFNHL 227 >gi|315641225|ref|ZP_07896302.1| poly A polymerase [Enterococcus italicus DSM 15952] gi|315482992|gb|EFU73511.1| poly A polymerase [Enterococcus italicus DSM 15952] Length = 406 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 114/206 (55%), Gaps = 10/206 (4%) Query: 13 SDLINILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 S+ IN +L K + ++ VGG VRD L++ S+ D+DIAT+ P + +FS+T Sbjct: 8 SEFINAQPVLQKIQAAGFEAYFVGGCVRDVLLHQSIHDVDIATSAYPSEIKELFSRT--- 64 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINAL 127 I I +GT+ ++ ++ +++TT R++ R +V F R D RRDFT+NAL Sbjct: 65 -IDIGIEHGTVLVLWHEEQYEVTTFRTESTYQDFRRPDQVTFVRSLAEDLKRRDFTMNAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + G +ID GL+D+ + ++ +GDA+ R ED LR++R RF + + + D L Sbjct: 124 ALAENGTIIDLFNGLSDINQKVVRAVGDANERFHEDALRMMRGLRFISQL-DFTMAPDTL 182 Query: 188 VASIKAKKGLKILSSERIWSEINKLL 213 A K + L +S ERI E KL+ Sbjct: 183 AAIEKHSQLLSFISIERIRIEWEKLV 208 >gi|300870433|ref|YP_003785304.1| polyA polymerase family protein [Brachyspira pilosicoli 95/1000] gi|300688132|gb|ADK30803.1| polyA polymerase family protein [Brachyspira pilosicoli 95/1000] Length = 464 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 8/216 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K +VGGAVRDS+M ++ + DI T P+ V R+F T +PT I +GT+ +I Sbjct: 25 KCFLVGGAVRDSIMGITPHEYDITTDAKPEDVQRMFKYT----VPTGIKHGTVLVIIEDM 80 Query: 88 YFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLND 144 + +ITT RSD +DGR+ KV + + D RRD TINA+ Y G +ID G+ D Sbjct: 81 HVEITTFRSDGNYSDGRHPDKVEYASSIEEDLPRRDLTINAMAYNVLDGTLIDMFDGMKD 140 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ + ++ +G+ + R ED LRI+R R FA +I+ + A + L ++SER Sbjct: 141 IKRKIVRSVGNPYERFSEDGLRIMRAIR-FATKLNFDIEKETFEAICHSTGMLASIASER 199 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I E N +L + NP I + G+ I ++ + Sbjct: 200 IREEFNGILLSNNPFRGIELLRKTGVLPLIMPELMQ 235 >gi|298503294|ref|YP_003725234.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TCH8431/19A] gi|298238889|gb|ADI70020.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TCH8431/19A] Length = 399 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 195/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 130 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 189 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 246 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S+L +++F+ ++++ LI L Sbjct: 247 TDFTFESSEQAWAALLWALEIENAQSLLKSWKTSRQFA--KQVQDLLI----------IL 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 295 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI 349 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 350 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|330684979|gb|EGG96654.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis VCU121] Length = 400 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+ + + ++ VGG+VRD LM + DIDI T+ P + IF T IP + Sbjct: 12 ILNQIQQHGYQAYYVGGSVRDYLMQRPIHDIDITTSATPYEIESIFDHT----IPVGKEH 67 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI ++ ++ +++TT R++ I R + V F RD D RRDFTINA+ D + Sbjct: 68 GTINVVYNRENYEVTTFRAEEEYIDHRRPSDVHFVRDLYEDVQRRDFTINAIAMDTDYQT 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 DY G +D+ N I+ +G R ED LRILR RF + K I+ A + Sbjct: 128 FDYFSGEDDINNGIIRTVGQPTERFEEDALRILRGLRFQSQLNFK-IEYHTYNAMANQME 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHM 225 +K LS ERI E+ KL+ +N + H+ Sbjct: 187 DIKYLSIERIIVELKKLISGQNVAKSYHHL 216 >gi|329571706|gb|EGG53387.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1467] Length = 196 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 6/148 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + I +GT+ ++ + Sbjct: 26 EAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VDVGIEHGTVLVLMEDQ 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ R +V F R K D RRDFTINAL D G++ID G+ DL Sbjct: 82 QYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF 173 N+TI+ +G+ H R ED LR++R RF Sbjct: 142 TNQTIRAVGNPHERFHEDALRMMRGLRF 169 >gi|168334095|ref|ZP_02692308.1| putative poly(A) polymerase [Epulopiscium sp. 'N.t. morphotype B'] Length = 409 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 112/392 (28%), Positives = 191/392 (48%), Gaps = 40/392 (10%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++I I++ L + +VGG VRD +M + D DI T+ LP + +IF +T T Sbjct: 6 EVIEIITELELAGFSAYVVGGCVRDMIMKRTPNDWDITTSALPADIKKIFERT----YDT 61 Query: 74 SISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I++GT+ +I K+++++TT R + + R V F + D RRDFT+NA+ Sbjct: 62 GIAHGTVTVILNKEHYEVTTYRIEKEYVNFRRPNGVEFAENIAQDLSRRDFTMNAIAYHP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +D GG D+ N+ I+ +GDA R ED LRILR RF A + I + A I Sbjct: 122 HKGFVDPYGGRKDIENKIIRAVGDAKIRFNEDALRILRAVRFAAQLNFE-IAEETKTAFI 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-------GGIFKEIFLDVQ-EISL 243 ++ LK +S ERI E NK+ ++N L I+++Y G K++F +++ E L Sbjct: 181 DKRELLKYISKERIRDEFNKICLSEN-LFFILNIYKWDILSYISGEIKKLFDNLETEQKL 239 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPRE--------IRYF 294 QL +V+ A ++ + R+ L+ D ++ + ++ + I Y+ Sbjct: 240 VQLLEVMAA-----MPVNLISRYTALLYPLNDSDAVKHILRELKFDNQTIKNVALAIEYY 294 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYG-DKVM-IAKLKIFLALHYNNLTHQDTCFIL--Q 350 + + NF + E+K+L + D V I +K A + + + F+L Sbjct: 295 I---YETNFK---IDAVEMKRLLRICEVDNVRNILLIKKNKASTIEEIEYIEKLFLLIDH 348 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382 +L +K +TG+DV+K I GK++G Sbjct: 349 ILEQKECYKIKDLAITGNDVIKQNIASGKEIG 380 >gi|154686492|ref|YP_001421653.1| tRNA CCA-pyrophosphorylase [Bacillus amyloliquefaciens FZB42] gi|166233842|sp|A7Z5Z6|CCA_BACA2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|154352343|gb|ABS74422.1| Cca [Bacillus amyloliquefaciens FZB42] Length = 396 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL L K ++ VGGAVRDS M + D+DIAT+ P+ V R+F +T + Sbjct: 9 LPILHHLMKAGHQAYFVGGAVRDSYMKRKIGDVDIATSASPNEVERLFKRT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R++ D R + V F D RRD TINA+ +G Sbjct: 65 EHGTVIVLWEDETYEVTTFRAESEYKDYRRPEAVRFITSLSEDLKRRDLTINAMAMSAEG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++DY GG +D+ + I+ +G+ R ED LR++R RF + G ++ + A IK Sbjct: 125 ELLDYFGGAHDIGQKLIRTVGNPEDRFREDALRMMRAVRFMSQLG-FLLEKETREAVIKD 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 ++ L +S ER E KLL+ + AI M G+ +E+ Sbjct: 184 RELLAHVSVERKTVEFEKLLQGASSQEAIQTMVQTGLIQEL 224 >gi|163814964|ref|ZP_02206351.1| hypothetical protein COPEUT_01114 [Coprococcus eutactus ATCC 27759] gi|158449647|gb|EDP26642.1| hypothetical protein COPEUT_01114 [Coprococcus eutactus ATCC 27759] Length = 443 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 116/209 (55%), Gaps = 16/209 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRDS++ D DI T+ P++V IF +T I T I +GT+ ++ K+ Sbjct: 22 EAYIVGGCVRDSILGRLPGDWDITTSARPEQVKEIFRRT----IDTGIEHGTVTVMMGKE 77 Query: 88 YFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 +++TT R DG Y+ +V FT + D RRDFTINA+ +ID GG Sbjct: 78 GYEVTTYR----IDGEYSDHRRPDQVEFTASLEEDLKRRDFTINAMAYSHSKGIIDMFGG 133 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + DL ++ I+ +G A R ED LRILR RF G +I+ D A I + LK +S Sbjct: 134 VQDLNDKVIRAVGVARDRFDEDALRILRAIRFAGQLG-FDIERDTRKAMIIQAQYLKNIS 192 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGI 230 +ERI E+ KLL + +P + ++ Y GI Sbjct: 193 AERIRVELTKLLVSDHP-DKLLEAYVTGI 220 >gi|73662596|ref|YP_301377.1| tRNA CCA-pyrophosphorylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642619|sp|Q49XR3|CCA_STAS1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|72495111|dbj|BAE18432.1| putative poly-A polymerase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 399 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 109/197 (55%), Gaps = 7/197 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL L ++ VGG+VRD LMN + DIDI T+ PD + +F KT IP + Sbjct: 12 ILEKLQAHHFQAYFVGGSVRDYLMNRPIHDIDITTSATPDEIETVFDKT----IPIGREH 67 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI +I + + +++TT RS+ D R +V F R+ D RRDFT+NA+ D ++ Sbjct: 68 GTINVIYKGEQYEVTTFRSEGDYDDHRRPNEVFFVRNLYDDVQRRDFTMNAIAMDINYQI 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 DY G D++++ I+ +G+ R ED LRI+R RF + +G +++ A + Sbjct: 128 FDYFEGQQDIKHQLIRTVGNPDERFDEDALRIIRGLRFQSQFG-FHLEEATFTAMLNHIA 186 Query: 196 GLKILSSERIWSEINKL 212 +K L+ ERI E+ KL Sbjct: 187 DIKYLAIERIVVELKKL 203 >gi|187736125|ref|YP_001878237.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Akkermansia muciniphila ATCC BAA-835] gi|187426177|gb|ACD05456.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Akkermansia muciniphila ATCC BAA-835] Length = 464 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 117/215 (54%), Gaps = 10/215 (4%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD L+ SV+DIDIAT+ PD V+R+F ++V ++G + + F++ Sbjct: 31 VGGCVRDRLLGYSVKDIDIATSARPDEVLRLFPDA-WEV---GAAFGVVLVRREGFSFEV 86 Query: 92 TTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ----QGKVIDYVGGLNDLR 146 T R D DGR + V D + D+ RRDFT+N L+ D G+V+DYVGG+ D+R Sbjct: 87 ATFRRDGSYRDGRRPEDVCFTDAEEDARRRDFTMNGLFEDPFSSPPGRVVDYVGGVEDIR 146 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 R ++ IG+ R ED LR++R R FA E ++ + + + L +S ERI Sbjct: 147 ARVLRCIGEPDRRFEEDSLRLMRAVR-FAVTREVQVEKETCSSIFRNAPLLARISPERIR 205 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E++++L + + + G+ K + ++ ++ Sbjct: 206 EELDRILLSPGRKRGVEMLVETGLMKHVIPEIYDM 240 >gi|301336247|ref|ZP_07224449.1| polyA polymerase [Chlamydia muridarum MopnTet14] Length = 410 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 9/226 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L ++ VGG+VRD L++ ++++DIAT P V IF T + + Sbjct: 11 KIVQKLRNAGYQAYFVGGSVRDMLLDRPIEEVDIATNASPTIVTTIFPDT----LSIGAA 66 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGK 134 +G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + K Sbjct: 67 FGIIAVKENGQLFEVATFRSDEDYADGRHPNRVIFASMKDDAIRRDFTINGMYYDPFEEK 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D V G DL + ++ IG R LED LRILR RF A G ++D +A IK Sbjct: 127 LFDLVEGRADLERKVVRAIGHPKQRFLEDKLRILRAIRFAATLG-FSLDPKTEIAIIKEA 185 Query: 195 KGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L +S ERIW E+ K+L K P ++ + + IF +++ Sbjct: 186 PSLPTSVSPERIWQELKKMLR-KAPYESLQLLIKLKVLPIIFPELK 230 >gi|71910486|ref|YP_282036.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS5005] gi|73619883|sp|Q9A0A5|CCA_STRP1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|71853268|gb|AAZ51291.1| poly(A) polymerase/tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS5005] Length = 402 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 122/216 (56%), Gaps = 15/216 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I Sbjct: 14 LPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 70 EHGTVLVLENGGEYEITTFRTEDIYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL+ + ++ +G A R ED LRI+R FRF A ++D D + +A Sbjct: 130 QVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEAITFEA 184 Query: 194 KKG----LKILSSERIWSEINKLLEAKNPLNAIVHM 225 + L+ +S ER ++E +KLL A + I M Sbjct: 185 MRSHSPLLEKISVERSFTEFDKLLMAPHWRKGISAM 220 >gi|15834702|ref|NP_296461.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] gi|270284868|ref|ZP_06194262.1| polyA polymerase [Chlamydia muridarum Nigg] gi|270288895|ref|ZP_06195197.1| polyA polymerase [Chlamydia muridarum Weiss] gi|7190112|gb|AAF38959.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] Length = 410 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 9/226 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L ++ VGG+VRD L++ ++++DIAT P V IF T + + Sbjct: 11 KIVQKLRNAGYQAYFVGGSVRDMLLDRPIEEVDIATNASPTIVTTIFPDT----LSIGAA 66 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGK 134 +G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + K Sbjct: 67 FGIIAVKENGQLFEVATFRSDEDYADGRHPNRVIFASMKDDAIRRDFTINGMYYDPFEEK 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D V G DL + ++ IG R LED LRILR RF A G ++D +A IK Sbjct: 127 LFDLVEGRADLERKVVRAIGHPKQRFLEDKLRILRAIRFAATLG-FSLDPKTEIAIIKEA 185 Query: 195 KGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L +S ERIW E+ K+L K P ++ + + IF +++ Sbjct: 186 PSLPTSVSPERIWQELKKMLR-KAPYESLQLLIKLKVLPIIFPELK 230 >gi|225861389|ref|YP_002742898.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230539|ref|ZP_06964220.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255205|ref|ZP_06978791.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|225726386|gb|ACO22237.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae Taiwan19F-14] gi|327389745|gb|EGE88090.1| CCA-adding enzyme [Streptococcus pneumoniae GA04375] Length = 394 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 195/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S+L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSLLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|296126066|ref|YP_003633318.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Brachyspira murdochii DSM 12563] gi|296017882|gb|ADG71119.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Brachyspira murdochii DSM 12563] Length = 464 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 8/213 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD++M ++ + DI T P+ V RIF T +PT I +GTI +I + + Sbjct: 28 LVGGAVRDAVMGITPHEYDITTDAKPEDVQRIFKYT----VPTGIKHGTILVIIEDMHVE 83 Query: 91 ITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRN 147 ITT RSD +DGR+ V + + D RRD TINA+ Y G +ID G+ D++ Sbjct: 84 ITTFRSDGNYSDGRHPDNVEYASSIEDDLPRRDLTINAMAYNVLDGTLIDMFDGMKDIKR 143 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + +K +GD + R ED LRI+R RF A + I+ + A + L +++ERI Sbjct: 144 KIVKSVGDPYERFREDGLRIMRAIRFAAKLNFE-IEKETFEAITHSTGMLASIAAERIRE 202 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 E N +L + NP + + G+ I ++ + Sbjct: 203 EFNGILLSSNPFRGLELLRKTGVLSLILPELMQ 235 >gi|291543612|emb|CBL16721.1| uncharacterized domain HDIG [Ruminococcus sp. 18P13] Length = 446 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 6/222 (2%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + LL + IVGG VRD L+ + D D+ T LP+++ ++F+ R I T Sbjct: 8 VLTAMELLEQAGYACHIVGGCVRDMLLGRTPSDYDLTTNALPEQMQQVFASCR--TIETG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQ 132 I++GT+ I+ + TT R D +DGR+ V FT + D RRDFT+NA+ + Sbjct: 66 IAHGTLTILLEGMSLECTTYRVDGTYSDGRHPDSVRFTPTLEEDLARRDFTVNAMAYHPR 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GG +DL+ ++ +G+ R ED LRILR RF + G ++ + A Sbjct: 126 LGLTDPFGGRDDLKRGILRCVGEPERRFTEDALRILRCVRFASVLG-FAVEPETAAAVHS 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K+ L+++S+ERI SE++KLL ++ + I+ Y +F I Sbjct: 185 MKQRLELVSAERIRSELDKLLMGEH-VTEILCRYGDVVFVPI 225 >gi|168210477|ref|ZP_02636102.1| polyA polymerase family protein [Clostridium perfringens B str. ATCC 3626] gi|170711451|gb|EDT23633.1| polyA polymerase family protein [Clostridium perfringens B str. ATCC 3626] Length = 422 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 117/417 (28%), Positives = 201/417 (48%), Gaps = 31/417 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT I + Sbjct: 10 ILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKH 65 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K +++TT R D + + + V F + + D RRDFTINA+ Sbjct: 66 GTVTVLIDKTPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGF 125 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK 194 D G DL+N+ I+ +GD R ED LR+LR RF N + L A SI+ Sbjct: 126 KDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKN 182 Query: 195 -KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K +K +S ERI SE K++ + +P ++ + N G + + + + + + + Sbjct: 183 FKLVKNISMERIQSEFTKIILSNDPDRGLMLLRNLGFSDFLVKEFKNLKIINCYDLYDDI 242 Query: 254 QVFEWKIDSL-----LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQ 305 I+SL +R L ++ S ++ K ++ ++++Y + + CN N Sbjct: 243 HDTYGLINSLPKKLHVRLAGLF-YKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENI 301 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWK 359 ++S +K L + V + L L + L++ D C + +SDI+ K Sbjct: 302 NSISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILASK 361 Query: 360 KPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 362 EPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQF 418 >gi|15674894|ref|NP_269068.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes M1 GAS] gi|13622033|gb|AAK33789.1| putative poly(A) polymerase [Streptococcus pyogenes M1 GAS] Length = 397 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 122/216 (56%), Gaps = 15/216 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I Sbjct: 9 LPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R ++V F R + D RRDFT+NAL D+ G Sbjct: 65 EHGTVLVLENGGEYEITTFRTEDIYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL DL+ + ++ +G A R ED LRI+R FRF A ++D D + +A Sbjct: 125 QVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAA-----SLDFDIEAITFEA 179 Query: 194 KKG----LKILSSERIWSEINKLLEAKNPLNAIVHM 225 + L+ +S ER ++E +KLL A + I M Sbjct: 180 MRSHSPLLEKISVERSFTEFDKLLMAPHWRKGISAM 215 >gi|260888975|ref|ZP_05900238.1| polyA polymerase [Leptotrichia hofstadii F0254] gi|260861035|gb|EEX75535.1| polyA polymerase [Leptotrichia hofstadii F0254] Length = 585 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 6/216 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D+ IL LN+ K +VGGAVRD ++N D D AT I + RIF+ Y Sbjct: 6 DDDVKFILEQLNRN-GKGFLVGGAVRDKILNKDPGDYDFATDIEYSELKRIFAG--YNPK 62 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYA 129 +G + I K ++I R + + + RY K + F + + D RRDFTIN++ Sbjct: 63 EMGAHFGILMINVNGKSYEIAKFRKETGVYNSRYPKEIKFVKTIEEDLARRDFTINSIAY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +Q ++D GG D+R + I+F+G RI ED LRILR FRF + G N+D A Sbjct: 123 SEQTGIVDLYGGRQDIRRKVIRFVGKPKLRIEEDALRILRAFRFISKLG-FNLDKKTAEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 K +K L +S ERI+ E++K+L K A + M Sbjct: 182 IYKKRKFLTKISKERIFDELSKILMGKFVKKAFIEM 217 >gi|15903456|ref|NP_359006.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae R6] gi|111658462|ref|ZP_01409135.1| hypothetical protein SpneT_02000362 [Streptococcus pneumoniae TIGR4] gi|73619881|sp|Q97PP9|CCA_STRPN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619884|sp|Q8CWQ3|CCA_STRR6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|15459066|gb|AAL00217.1| tRNA nucleotidyltransferase [Streptococcus pneumoniae R6] Length = 399 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 130 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 189 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 246 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 247 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 295 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI 349 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 350 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|227879118|ref|ZP_03997002.1| tRNA CCA-pyrophosphorylase [Lactobacillus crispatus JV-V01] gi|256843154|ref|ZP_05548642.1| tRNA nucleotidyltransferase [Lactobacillus crispatus 125-2-CHN] gi|256850247|ref|ZP_05555676.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-1A-US] gi|262046361|ref|ZP_06019323.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-3A-US] gi|293380227|ref|ZP_06626308.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus crispatus 214-1] gi|295692908|ref|YP_003601518.1| cca-adding enzyme [Lactobacillus crispatus ST1] gi|227861275|gb|EEJ68910.1| tRNA CCA-pyrophosphorylase [Lactobacillus crispatus JV-V01] gi|256614574|gb|EEU19775.1| tRNA nucleotidyltransferase [Lactobacillus crispatus 125-2-CHN] gi|256712884|gb|EEU27876.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-1A-US] gi|260573232|gb|EEX29790.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-3A-US] gi|290923194|gb|EFE00116.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus crispatus 214-1] gi|295031014|emb|CBL50493.1| CCA-adding enzyme [Lactobacillus crispatus ST1] Length = 399 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 7/197 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T I + Sbjct: 17 VLQILENAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTGIKH 72 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D +G++ Sbjct: 73 GTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDTRGQI 132 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GL+DL+N I+ +GD R ED LR++R RF + E ++S A K Sbjct: 133 VDLFNGLDDLKNHVIRAVGDPEKRFHEDALRMMRAVRFMSQL-EFKLESKTQQAIKDNHK 191 Query: 196 GLKILSSERIWSEINKL 212 LK +S ERI E KL Sbjct: 192 LLKKISVERIREEFVKL 208 >gi|294782920|ref|ZP_06748246.1| poly(A) polymerase [Fusobacterium sp. 1_1_41FAA] gi|294481561|gb|EFG29336.1| poly(A) polymerase [Fusobacterium sp. 1_1_41FAA] Length = 451 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 119/225 (52%), Gaps = 13/225 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL LNK K IVGGA+RD L+ L +DID T + + + +FS+ Y T Sbjct: 14 IEILRKLNKY-GKGYIVGGAIRDILLGLKPKDIDFTTNLPYETLKDLFSE--YNPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVV-------FTRDWKADSLRRDFTINALY 128 ++G ++I ++I R D + K+V F D K D RRDF+INA+ Sbjct: 71 AFGVLRIRVNDTEYEIAKFREDKYEEKDGLKIVPEDNKVDFVDDIKEDLSRRDFSINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G S+ + Sbjct: 131 YNEVDGIVDLYNGQKDIENKVINFVGNAEERIVEDPLRILRAFRFMSRLGFSL--SENTI 188 Query: 189 ASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +IK +K LK + ERI E +KLL +N N + M + G+ + Sbjct: 189 EAIKKQKDLLKSIPEERITIEFSKLLLGENVKNTLTAMKDTGVLE 233 >gi|293570256|ref|ZP_06681325.1| cca-adding enzyme [Enterococcus faecium E980] gi|291609663|gb|EFF38924.1| cca-adding enzyme [Enterococcus faecium E980] Length = 402 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N +A +H + Sbjct: 189 HELLSKISVERINVEFIKML-LGNERSAGIHAF 220 >gi|296333017|ref|ZP_06875474.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674879|ref|YP_003866551.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149868|gb|EFG90760.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413123|gb|ADM38242.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 397 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 9 LPVLRTLIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ + +++TT R++ + R + V F + D RRD TINA+ G Sbjct: 65 EHGTIIVLWEDETYEVTTFRAESEYEDYRRPSDVQFITSLEEDLKRRDLTINAMAMTADG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 KV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K Sbjct: 125 KVLDYFGGKKDIDQKLIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSLETKEAITKE 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K L +S ER E K+L+ + A+ + G+++E+ Sbjct: 184 KSLLSHVSVERKTIEFEKMLQGRASRQALQTLIQTGLYEEL 224 >gi|19703588|ref|NP_603150.1| Poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713690|gb|AAL94449.1| Poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 451 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 23/230 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LN+ K IVGGA+RD L+ L +D+D T + + + ++FS+ K I S Sbjct: 14 IGILNKLNEY-GKGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKLFSEYNLKEIGKS- 71 Query: 76 SYGTIKIICRKKYFDITTLRSD---------LITDGRYAKVVFTRDWKADSLRRDFTINA 126 +G ++I ++I R D +I +G+ KV F D K D RRDFTINA Sbjct: 72 -FGVLRIKINDIDYEIAKFREDNYEEKDGLKIIPEGK--KVSFVDDIKNDLTRRDFTINA 128 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--- 183 + ++ ++D G D+ N+ I FIG+A RI+ED LR+LR FRF + +D Sbjct: 129 MAYNEVEGIVDLYNGQKDIENKVINFIGNAEERIIEDPLRVLRAFRFMSR-----LDFSL 183 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 S+ + +IK +K LK + E+I E +KLL KN N + M + G+ + Sbjct: 184 SEDTIEAIKNQKNLLKNIPEEKITMEFSKLLLGKNIRNTLTLMKDTGVLE 233 >gi|296327658|ref|ZP_06870201.1| poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155248|gb|EFG96022.1| poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 451 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 125/230 (54%), Gaps = 23/230 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LN+ K IVGGA+RD L+ L +D+D T + + + ++FS+ Y T Sbjct: 14 IGILNKLNEY-GKGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKLFSE--YNPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSD---------LITDGRYAKVVFTRDWKADSLRRDFTINA 126 S+G ++I ++I R D +I +G+ KV F D K D RRDFTINA Sbjct: 71 SFGVLRIRIDDIDYEIAKFREDNYEEKDGLKIIPEGK--KVSFVDDIKNDLTRRDFTINA 128 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--- 183 + ++ ++D G D+ N+ I FIG+A RI+ED LR+LR FRF + +D Sbjct: 129 MAYNEVEGIVDLYNGQKDIENKVINFIGNAEQRIIEDPLRVLRAFRFMSR-----LDFSL 183 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 S+ + +IK +K LK + E+I E +KLL +N N + M + G+ + Sbjct: 184 SENTIEAIKKQKNLLKNIPEEKITMEFSKLLLGENIRNTLTLMKDTGVLE 233 >gi|332298006|ref|YP_004439928.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Treponema brennaborense DSM 12168] gi|332181109|gb|AEE16797.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Treponema brennaborense DSM 12168] Length = 469 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 118/209 (56%), Gaps = 9/209 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD + + D D+AT P +V +F + VIPT I++GT+ + K+ + Sbjct: 26 LVGGAVRDIVRGKTASDWDVATNATPQQVTDMFRR----VIPTGIAHGTVTVHFMKREVE 81 Query: 91 ITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 +TT R++ +DGR+ V F + D RRDFT+NA+ A+ G ++D GG +D++ Sbjct: 82 VTTFRTETGYSDGRHPDSVKFAATIEDDLSRRDFTMNAIAANLADGLIVDPFGGRDDIKA 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 I+ +G+A R ED LR +R RF A G +ID L A +AK+ +S ER Sbjct: 142 NVIRTVGNADERFAEDGLRPIRALRFAAQLG-FSIDPATLAAVPRAKEKTAGVSIERFRD 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 E K+L+A P A+ M + G+ + +FL Sbjct: 201 EFVKMLKAPQPSLALRLMEDTGMLR-LFL 228 >gi|257457449|ref|ZP_05622619.1| tRNA adenylyltransferase [Treponema vincentii ATCC 35580] gi|257445178|gb|EEV20251.1| tRNA adenylyltransferase [Treponema vincentii ATCC 35580] Length = 456 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 111/213 (52%), Gaps = 8/213 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD + + D DIAT P VMR+F +T IPT I +GT+ II + K+ + Sbjct: 27 LVGGAVRDFFLKKAASDWDIATDAQPQEVMRLFRRT----IPTGIEHGTVTIIYKSKHIE 82 Query: 91 ITTLRSDL-ITDGRY-AKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 TT R++ TDGR+ A V +T + D RRDFT+NA+ G + D G D+R Sbjct: 83 CTTFRTEADYTDGRHPAAVSYTATIEEDLSRRDFTMNAIAVSLPDGIIADPFNGCADIRA 142 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 I+ +G+ R LED LR +R RF A G ID L A +A + +S ER Sbjct: 143 GRIRTVGNPLDRFLEDGLRPVRAVRFAAQLGFA-IDGKTLEAIPQALHITQKISIERFRE 201 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 E K+L PL + M + G+ ++ E Sbjct: 202 EFTKMLACPAPLTGLRLMESTGLLNLFIPELAE 234 >gi|15901397|ref|NP_346001.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TIGR4] gi|116517000|ref|YP_816846.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae D39] gi|149007531|ref|ZP_01831166.1| polyA polymerase family protein [Streptococcus pneumoniae SP18-BS74] gi|149007893|ref|ZP_01831480.1| polyA polymerase family protein [Streptococcus pneumoniae SP18-BS74] gi|149021832|ref|ZP_01835839.1| predicted S-transferase [Streptococcus pneumoniae SP23-BS72] gi|14973044|gb|AAK75641.1| polyA polymerase family protein [Streptococcus pneumoniae TIGR4] gi|116077576|gb|ABJ55296.1| polyA polymerase family protein [Streptococcus pneumoniae D39] gi|147760620|gb|EDK67594.1| polyA polymerase family protein [Streptococcus pneumoniae SP18-BS74] gi|147760890|gb|EDK67860.1| polyA polymerase family protein [Streptococcus pneumoniae SP18-BS74] gi|147930068|gb|EDK81055.1| predicted S-transferase [Streptococcus pneumoniae SP23-BS72] gi|332074311|gb|EGI84788.1| CCA-adding enzyme [Streptococcus pneumoniae GA17545] Length = 394 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|297622074|ref|YP_003710211.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044] gi|297377375|gb|ADI39205.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044] Length = 403 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 102/387 (26%), Positives = 181/387 (46%), Gaps = 18/387 (4%) Query: 36 VRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR 95 VRD L++ DIDIAT P++++ +F KT I IS+G + ++ +++ T R Sbjct: 29 VRDFLLDHPSDDIDIATDAKPEKIVELFQKT----IEVGISFGVVVVLMDGHQYEVATFR 84 Query: 96 SDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFI 153 DL DGR + + D+ RRDFTIN ++ D + VID+V G DL I+ I Sbjct: 85 EDLGYEDGRRPTQCAYTNAEGDAKRRDFTINGMFYDPLEKNVIDFVDGRKDLEKGVIRAI 144 Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK--AKKGLKILSSERIWSEINK 211 GD + R ED LR++R RF +G +D D A IK A ++ ER+W E+ K Sbjct: 145 GDPYERFKEDRLRMIRAIRFTYRFG-YALDPDTEQA-IKDHAHCLFPAVAMERVWHELQK 202 Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271 + + A++ M+ G+ E+F ++++ +L + +EA F + ++L+ + L Sbjct: 203 MARYPSFGEALLKMHAVGLLAEVFPPLKKVPEIELLKRVEAINRFPLECPAVLQVMELFP 262 Query: 272 WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 S L F ++ I +T + LY L++ Sbjct: 263 ----NSPLEEQVAFCYYLKVSNKEIKLVEYTHQVRTQVSDQDADWVPLYAHPQAETVLQV 318 Query: 332 FLALHYNN--LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 A H++ L+V + I + P+ ++ +++ GI PG+++G +L + Sbjct: 319 VCARKNGGQFQVHRERMDRLRVHINRIVNQSPV--VSASMLLEEGIVPGRQMGELLREAE 376 Query: 390 QEWINSSFQLSQEDLHHLLRKLIASSQ 416 + I+ L +E L L ++ + S + Sbjct: 377 RLAISHDLHLPEEVLLLLKKQTVWSKE 403 >gi|210623839|ref|ZP_03294088.1| hypothetical protein CLOHIR_02039 [Clostridium hiranonis DSM 13275] gi|210153334|gb|EEA84340.1| hypothetical protein CLOHIR_02039 [Clostridium hiranonis DSM 13275] Length = 448 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 9/232 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG +RDSL+ D DIAT+ P+ +M IF T + T I +GT+ ++ K+ +++ Sbjct: 28 VGGCIRDSLLGRVPNDWDIATSAKPEDIMNIFENT----VETGIEHGTVTVVIDKEPYEV 83 Query: 92 TTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D TDGR+ V FT + + D RRDFTINA+ + ++D GG +DL+N+ Sbjct: 84 TTYRIDGDYTDGRHPDSVEFTENIEEDLSRRDFTINAMAYNNSTGLVDVFGGRDDLKNKV 143 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +GD R ED LR++R RF A E +I++D A + + +S ERI E Sbjct: 144 IRCVGDPIKRFEEDALRMMRGIRFSAQL-EFSIENDTFKAIEEMSDLISAVSIERINVEF 202 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 K L + I H GI K I ++ +I + ++ A ++ + ++ Sbjct: 203 TKTLMSDAKKIMIYH--ESGILKNILQELYKIDSEDYNREFSAVEMIKMGVN 252 >gi|307708357|ref|ZP_07644824.1| CCA-adding enzyme [Streptococcus mitis NCTC 12261] gi|307615803|gb|EFN95009.1| CCA-adding enzyme [Streptococcus mitis NCTC 12261] Length = 394 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 110/424 (25%), Positives = 185/424 (43%), Gaps = 69/424 (16%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDDTG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G A R ED LRI+R FRF A G ++++ A Sbjct: 125 EIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELETETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L+ +S ER + E +KLL A + M + +L S D+L+++ + E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSKDKLNRLFDLE 241 Query: 254 QVFE------------WKIDSLLRFIVLISW----------QDKKSILSMAKKFSLPREI 291 F W ++ L +W QD +IL++ +K L + Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILALREKGELSKRD 301 Query: 292 RY-----FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346 Y FL+ N Q P++ + Y +LT Sbjct: 302 CYRFDLDFLLQAENLRQAQGKPVNPQV-------------------ITETYQSLT----- 337 Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 IH KK + G + +YG PG +G IL + ++ + ++ +H Sbjct: 338 ---------IHDKKEIQINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENDRQAIHA 388 Query: 407 LLRK 410 LR+ Sbjct: 389 YLRE 392 >gi|300812579|ref|ZP_07092996.1| putative tRNA adenylyltransferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496452|gb|EFK31557.1| putative tRNA adenylyltransferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 396 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T I Sbjct: 14 MPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++QG Sbjct: 70 QHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 130 EIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLS-FSLEEKTRQAIIDN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + L +S ERI E KL KN A G+ +E Sbjct: 189 HELLSKISVERIREEFVKLALGKNSRQAFKDFLATGLSEE 228 >gi|168486818|ref|ZP_02711326.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC1087-00] gi|225857182|ref|YP_002738693.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae P1031] gi|183570208|gb|EDT90736.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC1087-00] gi|225726321|gb|ACO22173.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae P1031] Length = 394 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|323486232|ref|ZP_08091560.1| poly A polymerase [Clostridium symbiosum WAL-14163] gi|323400450|gb|EGA92820.1| poly A polymerase [Clostridium symbiosum WAL-14163] Length = 408 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 173/376 (46%), Gaps = 15/376 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL+ L ++ VGG VRD+L+ D DI T+ P++V ++F KT I T + Sbjct: 11 EILAGLRADGYEAFAVGGCVRDTLLGRVPGDWDITTSARPEQVKKVFGKT----IDTGLQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ ++ITT R D D R+ K V FT D K D RRDFTINA+ + Sbjct: 67 HGTVTVMREHVGYEITTYRIDGEYEDARHPKEVAFTSDLKEDLRRRDFTINAMAYSHETG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG+ DL+ ++ +G+A R ED LRILR RF A I+ + A Sbjct: 127 IVDIFGGMKDLKEGVVRCVGNAVERFTEDALRILRAIRFSAQL-NFTIEDETYAALTVIA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-E 253 L +S ERI +E+ K L + +P I+ + G+ I + + +V EA Sbjct: 186 PNLANVSKERIQAELTKTLLSDHP-ERILLVEETGMSPYISAGFHSVFGTNIGRVREACM 244 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNFNQKTLSI 310 + LR+ +S+ + + K+ + + L+ +F+ + + Sbjct: 245 RASGLPARKSLRWAAFLSYGGEDCAAQILKELKMDNDTTDRVKTLVRWFSEELQEDDCKV 304 Query: 311 PEI-KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 E+ + D++++ K + + T ++ D I + +TG D Sbjct: 305 REVMSSMEDGRFDELLLLKESLLPEEAAGTGRIRKTAEAVRSRGDCIRMRD--MAVTGKD 362 Query: 370 VVKYGIPPGKKVGNIL 385 ++ G+ PG +GNIL Sbjct: 363 LIAAGVRPGPDMGNIL 378 >gi|323693975|ref|ZP_08108160.1| hypothetical protein HMPREF9475_03023 [Clostridium symbiosum WAL-14673] gi|323501975|gb|EGB17852.1| hypothetical protein HMPREF9475_03023 [Clostridium symbiosum WAL-14673] Length = 408 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 173/376 (46%), Gaps = 15/376 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL+ L ++ VGG VRD+L+ D DI T+ P++V ++F KT I T + Sbjct: 11 EILAGLRADGYEAFAVGGCVRDTLLGRVPGDWDITTSARPEQVKKVFGKT----IDTGLQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ ++ITT R D D R+ K V FT D K D RRDFTINA+ + Sbjct: 67 HGTVTVMREHVGYEITTYRIDGEYEDARHPKEVAFTSDLKEDLRRRDFTINAMAYSHETG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG+ DL+ ++ +G+A R ED LRILR RF A I+ + A Sbjct: 127 IVDIFGGMKDLKEGVVRCVGNAVERFTEDALRILRAIRFSAQL-NFTIEDETYAALTVIA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-E 253 L +S ERI +E+ K L + +P I+ + G+ I + + +V EA Sbjct: 186 PNLANVSKERIQAELTKTLLSDHP-ERILLVEETGMSPYISAGFHSVFGTNIGRVREACM 244 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNFNQKTLSI 310 + LR+ +S+ + + K+ + + L+ +F+ + + Sbjct: 245 RASGLPARKSLRWAAFLSYGGEDCAAQILKELKMDNDTTDRVKTLVRWFSEELQEDDCKV 304 Query: 311 PEI-KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 E+ + D++++ K + + T ++ D I + +TG D Sbjct: 305 REVMSSMEDGRFDELLLLKESLLPEEAAGTGRIRKTAEAVRSRGDCIRMRD--MAVTGKD 362 Query: 370 VVKYGIPPGKKVGNIL 385 ++ G+ PG +GNIL Sbjct: 363 LIAAGVRPGPDMGNIL 378 >gi|257887709|ref|ZP_05667362.1| poly A polymerase [Enterococcus faecium 1,141,733] gi|257823763|gb|EEV50695.1| poly A polymerase [Enterococcus faecium 1,141,733] Length = 402 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N +A +H + Sbjct: 189 HELLGKISVERINVEFIKML-LGNERSAGIHAF 220 >gi|257898840|ref|ZP_05678493.1| poly A polymerase [Enterococcus faecium Com15] gi|257836752|gb|EEV61826.1| poly A polymerase [Enterococcus faecium Com15] Length = 402 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N +A +H + Sbjct: 189 HELLGKISVERINVEFIKML-LGNERSAGIHAF 220 >gi|154498343|ref|ZP_02036721.1| hypothetical protein BACCAP_02332 [Bacteroides capillosus ATCC 29799] gi|150272654|gb|EDM99832.1| hypothetical protein BACCAP_02332 [Bacteroides capillosus ATCC 29799] Length = 392 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD L+ + D D+ T+ +P+ V+ +F +T +PT I +GT+ ++ ++ Sbjct: 30 VGGCVRDLLLGRTPGDWDVTTSAMPEEVIALFDRT----VPTGIRHGTVTVLTEDGGVEV 85 Query: 92 TTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ DGR+ V F D D RRDFTINA+ G VID GG DL+ R Sbjct: 86 TTFRAESGYADGRHPDAVTFGGDLTGDLTRRDFTINAMALGPDGAVIDPFGGQKDLQARL 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWS 207 I+ +G+ R ED LR+LR RF A G +N ++ L + + LS+ERI + Sbjct: 146 IRCVGEPGRRFREDALRMLRAVRFSAQLGFAVENATAEALRDNAELT---ACLSAERIRT 202 Query: 208 EINKLLEAKNP 218 E+ K+L ++ P Sbjct: 203 ELEKILLSQWP 213 >gi|303260182|ref|ZP_07346154.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP-BS293] gi|303262572|ref|ZP_07348513.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP14-BS292] gi|303264974|ref|ZP_07350889.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS397] gi|303266437|ref|ZP_07352325.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS457] gi|303269019|ref|ZP_07354801.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS458] gi|301802274|emb|CBW35026.1| CCA-adding enzyme [Streptococcus pneumoniae INV200] gi|302636289|gb|EFL66783.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP14-BS292] gi|302638679|gb|EFL69142.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP-BS293] gi|302641409|gb|EFL71774.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS458] gi|302644015|gb|EFL74274.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS457] gi|302645493|gb|EFL75725.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS397] Length = 394 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKDI 344 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|194397214|ref|YP_002038188.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae G54] gi|226702089|sp|B5E6J9|CCA_STRP4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|194356881|gb|ACF55329.1| poly(A) polymerase family protein [Streptococcus pneumoniae G54] Length = 399 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLHNPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 130 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 189 TPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 246 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 247 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 295 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI 349 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 350 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|221232267|ref|YP_002511420.1| CCA-adding enzyme [Streptococcus pneumoniae ATCC 700669] gi|225854998|ref|YP_002736510.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae JJA] gi|220674728|emb|CAR69301.1| CCA-adding enzyme [Streptococcus pneumoniae ATCC 700669] gi|225723806|gb|ACO19659.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae JJA] Length = 394 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + + L L NL Q QV+ + IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDLDLLLQAENLRQAQGKEVNPQVIKETYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|255282035|ref|ZP_05346590.1| poly A polymerase [Bryantella formatexigens DSM 14469] gi|255267354|gb|EET60559.1| poly A polymerase [Bryantella formatexigens DSM 14469] Length = 457 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 7/204 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG VRDS++ D DI T+ P +V +F +T + T I+ Sbjct: 11 HIIGRLEEAGFEAYAVGGCVRDSIIGREPDDWDITTSAKPQQVKALFDRT----VDTGIA 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ K +++TT R D D R+ K V FT + D RRDFT+NA+ + Sbjct: 67 HGTVTVMLDKTGYEVTTYRIDGEYADSRHPKEVSFTDNLTEDLRRRDFTVNAMAYSESRG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG+ DL+ I+ +G+A R ED LRILR RF A G +I+ + A+ Sbjct: 127 LIDVFGGIRDLQEGIIRCVGNAQERFSEDALRILRAVRFSAQLG-FSIEEETQAAARNMA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNP 218 LK +S+ERI E+ +LL + +P Sbjct: 186 GNLKNISAERIQGELVRLLVSPHP 209 >gi|168214036|ref|ZP_02639661.1| polyA polymerase family protein [Clostridium perfringens CPE str. F4969] gi|170714488|gb|EDT26670.1| polyA polymerase family protein [Clostridium perfringens CPE str. F4969] Length = 422 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRDSL+N QD DI T P+++ +F KT IPT I +GT+ ++ K ++ Sbjct: 23 IVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKHGTVTVLIDKTPYE 78 Query: 91 ITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 +TT R D + + + V F + + D RRDFTINA+ D G DL+N+ Sbjct: 79 VTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGFKDCFNGKEDLKNK 138 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK-KGLKILSSERIW 206 I+ +GD R ED LR+LR RF N + L A SI+ K +K +S ERI Sbjct: 139 LIRCVGDPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKNFKLVKNISMERIQ 195 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR- 265 SE K++ + P ++ + N G + + + + L + + I+SL + Sbjct: 196 SEFTKIILSNEPDRGLMLLRNLGFSDFLVKEFKNLKLINCYDLYDDIHDTYGLINSLPKK 255 Query: 266 ---FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQKTLSIPEIKKLFYL 319 + + ++ S ++ K ++ ++++Y + + CN N ++S +K L Sbjct: 256 LHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENINSISCNMTRKKLKL 315 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWKKPLF----PLTGDD 369 + V + L L + L++ D C + +SDI+ K+P+F +TG+D Sbjct: 316 LINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILASKEPIFIKDLAITGND 375 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 ++ + PGK +G IL + + + ++EDL +L ++ + Sbjct: 376 LITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQFYS 420 >gi|239624748|ref|ZP_04667779.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521134|gb|EEQ61000.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 448 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 125/242 (51%), Gaps = 15/242 (6%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL+ LN ++ +VGG VRD ++ D DI T+ LP++V ++F +T + T I Sbjct: 11 EILTKLNDNGYEAYVVGGCVRDMILGREPGDWDITTSALPEQVKQVFRRT----VDTGIQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R D DGR+ V FT D RRDFTINA+ + Sbjct: 67 HGTVTVMMGDEGYEVTTYRIDGEYADGRHPDSVTFTPSLTEDLKRRDFTINAMAYNGNTG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG++DL I+ +G+ R ED LRILR RF A G I+ A Sbjct: 127 LVDEFGGMDDLDRGIIRCVGEPMDRFSEDALRILRAIRFSAQLG-FTIEGRTYEAIRAIA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEISLDQLS 247 + +S ERI E+ KLL + NP I +Y GI F +++ ++ LD+ Sbjct: 186 PNMVHVSKERIQVELTKLLLSPNP-GHINMVYETGISPYVSETFHKVYCREEDGGLDEGK 244 Query: 248 QV 249 QV Sbjct: 245 QV 246 >gi|303255341|ref|ZP_07341411.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS455] gi|302597709|gb|EFL64785.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS455] Length = 394 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L K + ++GG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKLKKQALRLILLGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKDI 344 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|218249512|ref|YP_002375206.1| polynucleotide adenylyltransferase [Borrelia burgdorferi ZS7] gi|226321404|ref|ZP_03796931.1| polynucleotide adenylyltransferase [Borrelia burgdorferi Bol26] gi|218164700|gb|ACK74761.1| polynucleotide adenylyltransferase [Borrelia burgdorferi ZS7] gi|226233200|gb|EEH31952.1| polynucleotide adenylyltransferase [Borrelia burgdorferi Bol26] Length = 410 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 113/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRAPKQVEYTKNLTKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +TI+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KTIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|182684511|ref|YP_001836258.1| polyA polymerase family protein [Streptococcus pneumoniae CGSP14] gi|226702090|sp|B2IR74|CCA_STRPS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|182629845|gb|ACB90793.1| polyA polymerase family protein [Streptococcus pneumoniae CGSP14] Length = 399 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 37/408 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 14 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 130 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S D+L+++ +E Sbjct: 189 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLE 246 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 247 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPL 362 ++ E +L K + I L L NL Q Q +++ IH KK + Sbjct: 295 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKDI 349 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + +YG PG +G IL + ++ + ++E +H LR+ Sbjct: 350 QINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|257896203|ref|ZP_05675856.1| poly A polymerase [Enterococcus faecium Com12] gi|293379555|ref|ZP_06625697.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium PC4.1] gi|257832768|gb|EEV59189.1| poly A polymerase [Enterococcus faecium Com12] gi|292641864|gb|EFF60032.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium PC4.1] Length = 402 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N +A +H + Sbjct: 189 HELLGKISVERINLEFIKML-LGNERSAGIHAF 220 >gi|313897877|ref|ZP_07831418.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium sp. HGF2] gi|312957412|gb|EFR39039.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium sp. HGF2] Length = 454 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 114/215 (53%), Gaps = 7/215 (3%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K +DS + ++L L + ++ +VGG VRD LM + D DI T P VM +F + Sbjct: 2 KTINDSQIQSVLQLFSTIHKEAWLVGGCVRDMLMGRELHDYDITTDATPYEVMALFQEKG 61 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTIN 125 Y+VIPT + +GT+ ++ + + +ITT R++ T+ R + V FT D D RRDFT+N Sbjct: 62 YRVIPTGLKHGTVTVLVQDEPIEITTYRTESAYTNHRSPEAVRFTPDIDEDLKRRDFTMN 121 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNID 183 A+ + D G D+ +TI+ +G A R+ ED LRILR RF H+ I+ Sbjct: 122 AIAWHPKRGFHDPYHGQADIAKKTIRCVGKASERMQEDALRILRALRFHCTLHF---TIE 178 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + + A L +S ERI E N++L P Sbjct: 179 EETVQAIRTHAHLLSYISRERIREEFNRILLQDYP 213 >gi|208434561|ref|YP_002266227.1| poly(A) polymerase [Helicobacter pylori G27] gi|208432490|gb|ACI27361.1| poly(A) polymerase [Helicobacter pylori G27] Length = 402 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI ++ + ++ITT R + I + K+VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITVLKNHQSYEITTFRIEKGHIKHRKPKKLVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+TI+ +G+A R ED LRILR RF A G K I + Sbjct: 125 SPTKGIIDPFKGQNAIENQTIECVGEARLRFFEDALRILRALRFSATLGFK-IAPNTKRV 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|317055702|ref|YP_004104169.1| metal dependent phosphohydrolase [Ruminococcus albus 7] gi|315447971|gb|ADU21535.1| metal dependent phosphohydrolase [Ruminococcus albus 7] Length = 444 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 110/201 (54%), Gaps = 5/201 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ +L + ++ IVGG VRD++M + D D+ T PD +++IFS + I T + + Sbjct: 12 VIEILEQNGYEAYIVGGCVRDAMMGVEPHDYDVCTDCTPDDMVKIFSG--FHTIETGLKH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++TT RSD TD R V F D K D RRDFT+NA+ + + Sbjct: 70 GTLTVMSEHMPVEVTTYRSDGEYTDHRRPDSVKFETDLKEDLKRRDFTVNAMCFNPKNGT 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G NDL + I+ +G+A R ED LRI+R R FA + I+ A K Sbjct: 130 VDLFDGRNDLNEKVIRCVGNAEDRFDEDALRIMRALR-FASTLDFRIEEYTAAAMRKKSH 188 Query: 196 GLKILSSERIWSEINKLLEAK 216 L +S+ERI+SE+ KLL K Sbjct: 189 LLNAISAERIFSELKKLLCGK 209 >gi|300767473|ref|ZP_07077385.1| tRNA adenylyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495292|gb|EFK30448.1| tRNA adenylyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 407 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 110/410 (26%), Positives = 178/410 (43%), Gaps = 51/410 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRD+++ + D+DIAT+ P V ++F +T + T I +GT+ I+ Sbjct: 26 EAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFKRT----VDTGIEHGTVMILDHGN 81 Query: 88 YFDITTLRSDLITDG-----RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++ TT R++ G R +V F R K D RRDFTINAL G+VID GL Sbjct: 82 GYETTTFRTE---SGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTANGEVIDLFDGL 138 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 D+ ++ +G A R ED LR++R RF + G I+S A L ++ Sbjct: 139 ADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLG-FTIESQTEQAIADNAALLAKIAV 197 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEWKID 261 ER E KLL ++P+ + + +++ + + QE L QL + W + Sbjct: 198 ERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYMPAMADQEAMLRQLMALP------AWHLP 251 Query: 262 SLLRFIVLISW----QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 S+ L+SW D+ ++ + K + E+ N T + IK L Sbjct: 252 SIESTWTLLSWTMQRTDEAAVRQLLKTWKTSNEL-----------INHVTAA---IKALM 297 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQ----------DTCFILQVLSDIIHWKKPLFPLTG 367 L + + A+ + L +Q + S IH K L + G Sbjct: 298 ALKHNGQLTAQENFYTGLEALKTANQVATILGFGQGQAQLVQSYASLPIHDKHEL-AING 356 Query: 368 DDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 D++K + PG +G IL C Q + Q+ L R ++A S+ Sbjct: 357 GDLLKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405 >gi|312866731|ref|ZP_07726945.1| tRNA adenylyltransferase [Streptococcus parasanguinis F0405] gi|311097812|gb|EFQ56042.1| tRNA adenylyltransferase [Streptococcus parasanguinis F0405] Length = 398 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 15/206 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF +T + Sbjct: 7 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFDRT----VDV 62 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R+ D+ D R + V F R + D RRDFT+NA ++ Sbjct: 63 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGL 187 +G+++D GL DL N+ ++ +G H R ED LRI+R FRF A G E D+ Sbjct: 123 KGEIVDLFHGLEDLENKVLRAVGLPHERFNEDALRIMRGFRFQASLGFELEEATFDAMKE 182 Query: 188 VASIKAKKGLKILSSERIWSEINKLL 213 A + L+ +S ER + E +KLL Sbjct: 183 CAPL-----LEKISVERTFIEFDKLL 203 >gi|91199952|emb|CAJ72994.1| similar to poly(A) polymerase [Candidatus Kuenenia stuttgartiensis] Length = 437 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 117/429 (27%), Positives = 191/429 (44%), Gaps = 56/429 (13%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 + +L +KG D + GG VRD +M D DIAT LP VM +F KT Y Sbjct: 11 VKTLQDKGFD-ALFAGGCVRDMIMRRESADYDIATNALPHDVMNLFKKT----FSVGTQY 65 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 G + ++ F++ T R++ +DGR+ V + D RRDFTIN L D + ++ Sbjct: 66 GVVVVVKDGHNFEVATFRTEKSYSDGRHPDYVSFSTAEEDVRRRDFTINGLLYDPVKKEM 125 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DYVGG +D+ I+ IGD R+ ED LR++R RF + +I + A I Sbjct: 126 LDYVGGRDDIAAGIIRTIGDPVERLTEDKLRMIRAVRFACRFN-FHIHEETRQAIINLAP 184 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + ++S+ERI E+ K++ NP I + + +EI +V E+ + + + Sbjct: 185 QIHVVSAERIREELQKIITGPNPHLGIQLLDELCLLREILPEVSEM------KGVRQPEN 238 Query: 256 FEWKIDSLLRFIVLISWQDKKS-ILSMA---KKFSLPR------EIRYFL-------ISF 298 F + D ++ +S + S L+M PR IR+ L I+ Sbjct: 239 FHPEGDVFTHTLLCLSKMENPSWTLAMGVLLHDMGKPRTFQELDRIRFNLHEKVGADITA 298 Query: 299 FNCNFNQKTLSIPE------IKKLFYLYGDKVMIAKLK-IFLALHYNNLTHQDTCFILQV 351 CN + + + E +K L + K+ + KLK +F Y L ++ C I + Sbjct: 299 KICNRLKTSNADKERIIWLVLKHLCFKDAKKMRLNKLKRLFAHEAYKEL--EELCRIDAL 356 Query: 352 -----LSDIIHWK-----------KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 LSD + KP +TG D++ G+ PG +IL + E ++ Sbjct: 357 ASSGDLSDYYFCREMFEKLSKEEVKPKPLITGHDLIAIGLTPGPAFKHILTKIEDEQLDG 416 Query: 396 SFQLSQEDL 404 + +E L Sbjct: 417 NITTKEEAL 425 >gi|110800095|ref|YP_694495.1| polyA polymerase family protein [Clostridium perfringens ATCC 13124] gi|110674742|gb|ABG83729.1| polyA polymerase family protein [Clostridium perfringens ATCC 13124] Length = 424 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 115/418 (27%), Positives = 201/418 (48%), Gaps = 29/418 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT I + Sbjct: 12 ILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKH 67 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K +++TT R D + + + V F + + D RRDFTINA+ Sbjct: 68 GTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGF 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK 194 D G +DL+N+ I+ +GD R ED LR+LR RF N + L A SI+ Sbjct: 128 KDCFNGKDDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKN 184 Query: 195 -KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K +K +S ERI SE K++ + +P ++ + G + + + + L + + Sbjct: 185 FKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYDDI 244 Query: 254 QVFEWKIDSLLR----FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQK 306 I+SL + + + ++ S ++ K ++ ++++Y + + CN N Sbjct: 245 HDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENIN 304 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWKK 360 +S +K L + V + L L + L++ D C + +SDI+ K+ Sbjct: 305 NISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILASKE 364 Query: 361 PLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ + Sbjct: 365 PIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQFYS 422 >gi|307704397|ref|ZP_07641310.1| RNA nucleotidyltransferase [Streptococcus mitis SK597] gi|307622041|gb|EFO01065.1| RNA nucleotidyltransferase [Streptococcus mitis SK597] Length = 394 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 106/403 (26%), Positives = 186/403 (46%), Gaps = 27/403 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLQRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L+ +S ER + E +KLL A + M + +L S D+L+++ + E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLAAMIESQAYD--YLPDMAASQDKLNRLFDLE 241 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 F ++ S + L+ + ++ K + R+ Q L+I + Sbjct: 242 TDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQF---------AKQVQDLLTILTL 291 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPLFPLTG 367 ++ L + + L L NL Q Q +++ IH KK + G Sbjct: 292 REKGELSNRDCY--RFDLDLLLQAENLRQAQGKPVNPQAITETYQSLTIHDKKEIQINGG 349 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +YG PG +G IL + ++ + ++ +H LR+ Sbjct: 350 ILIKEYGYQPGPDLGEILTEIEYAIVDGELENDRQAIHAYLRE 392 >gi|194246633|ref|YP_002004272.1| CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) [Candidatus Phytoplasma mali] gi|193806990|emb|CAP18425.1| CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) [Candidatus Phytoplasma mali] Length = 387 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/216 (37%), Positives = 120/216 (55%), Gaps = 8/216 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +IL +L + ++ IVGGAVRD +NL DIDI T L +M+IF K+ +I Sbjct: 11 DILKILQQNGFEAFIVGGAVRDYYLNLPFVDIDIITNALTLDLMKIF-----KINSNNIK 65 Query: 77 YGTIKIICRKKYFDITTLR-SDLITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGK 134 +G+ + + FDITT R + + R+ K++FT D K D LRRDFTIN+L D + Sbjct: 66 HGSCNVCFKNSQFDITTYRIEEKYKNHRHPTKIIFTNDVKKDLLRRDFTINSLLMDDKKN 125 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +IDY+GGL+D++N IK I D + ED +RILR F A + I+ + A K Sbjct: 126 IIDYLGGLSDIKNSIIKTIKDPEEKFQEDSVRILRTCYFQAKLCFE-IEINTKKALKKQS 184 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 LK +S +RI E K++ K+ +++ + I Sbjct: 185 YLLKKISKDRILQEFIKIISQKHFYKSLITIKETNI 220 >gi|227551173|ref|ZP_03981222.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium TX1330] gi|227179735|gb|EEI60707.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium TX1330] Length = 434 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 46 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 101 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R + D RRDFTINA + G Sbjct: 102 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKEDG 161 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 162 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 220 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N +A +H + Sbjct: 221 HELLGKISVERINLEFIKML-LGNERSAGIHAF 252 >gi|168483567|ref|ZP_02708519.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC1873-00] gi|172043170|gb|EDT51216.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC1873-00] gi|332200121|gb|EGJ14194.1| CCA-adding enzyme [Streptococcus pneumoniae GA47368] Length = 394 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 108/409 (26%), Positives = 194/409 (47%), Gaps = 39/409 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S ++L+++ +E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQNKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPL 362 ++ E +L K + I L L NL + S IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQARGKEVNPQAITEKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GD ++K YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 -QINGDILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|289422289|ref|ZP_06424140.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptostreptococcus anaerobius 653-L] gi|289157294|gb|EFD05908.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptostreptococcus anaerobius 653-L] Length = 430 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 24/219 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRDS+M + +D DI T LP+ ++ +F +T IPT I +GT+ ++ + Sbjct: 22 EAFVVGGCVRDSIMARTPKDWDITTDALPEDIIAMFDRT----IPTGIKHGTVTVLVGGQ 77 Query: 88 YFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R D + R V FTR+ D RRDFTINA+ ++D GL D+ Sbjct: 78 AYEVTTYRIDGDYLDSRRPESVEFTRNIVDDLSRRDFTINAMAYSPSRGLVDRFSGLEDI 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSDGLVASIKAKKGLK 198 +N+ I+ +G+ R ED LRI+R RF A G +K I+ + L L Sbjct: 138 KNKIIRCVGNPDLRFKEDALRIMRAIRFSAQLGFQIEESTQKYIEENSLR--------LH 189 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYN-GGIFKEIFL 236 ++S+ERI E+ K++E+ +P N + ++ N GG + FL Sbjct: 190 LISAERIHDELEKVIES-DP-NKVKNLNNLGGFVDKFFL 226 >gi|312977290|ref|ZP_07789038.1| poly A polymerase [Lactobacillus crispatus CTV-05] gi|310895721|gb|EFQ44787.1| poly A polymerase [Lactobacillus crispatus CTV-05] Length = 399 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 109/197 (55%), Gaps = 7/197 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T I + Sbjct: 17 VLQILENAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTGIKH 72 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D +G++ Sbjct: 73 GTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDTRGQI 132 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GL+DL+N I+ +GD R ED LR++R RF + E ++S A K Sbjct: 133 VDLFNGLDDLKNHVIRAVGDPEKRFHEDALRMMRAVRFMSQL-EFKLESKTQQAIKDNHK 191 Query: 196 GLKILSSERIWSEINKL 212 L+ +S ERI E KL Sbjct: 192 LLEKISVERIREEFVKL 208 >gi|295426284|ref|ZP_06818944.1| poly A polymerase [Lactobacillus amylolyticus DSM 11664] gi|295064023|gb|EFG54971.1| poly A polymerase [Lactobacillus amylolyticus DSM 11664] Length = 398 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 112/411 (27%), Positives = 187/411 (45%), Gaps = 42/411 (10%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D + +L +L + ++ VGG+VRD L+ + D+DIAT+ P+ V F+KT I T Sbjct: 13 DAMPVLKILEQAGYEAYFVGGSVRDVLLGRQIHDVDIATSAYPEEVKEQFAKT----IDT 68 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R++ R V F ++ D RRDFTINAL + Sbjct: 69 GIKHGTVTVLYNGNSYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMNT 128 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GL+DL+ + I+ +GD R ED LR++R RF + + +++ + A Sbjct: 129 DGQILDLFDGLSDLKKKVIRAVGDPEKRFHEDALRMMRAVRFMSQL-KFDLEENTQKAIE 187 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI--FLDVQE-ISLDQLSQ 248 + LK +S ERI E K+ N A + + +++ F E +S+ Q Sbjct: 188 DHHQLLKKISVERIRDEFVKMGLGSNAREAFQVFLDTKLSEDVPDFAGKSELLSVFPQLQ 247 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 A + W I I+L+ Q+ K I F+ + N N T Sbjct: 248 FSPALETSLWSI-----IIILLKIQNDK--------------IGTFMRDWKNS--NAMTN 286 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL--QVLSDIIHWKKPLFPLT 366 + +I F + D V ++F N L D IL V S+ + + P+ Sbjct: 287 EVEQIVSFFDVLSDHVP-GDYELFEIGKKNLLNTIDVAHILGQPVDSEALVDRYLALPIK 345 Query: 367 --------GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G +++ GI PG K+G +L KQE + + + S+ + L Sbjct: 346 DTSELAVDGRFLIENGIRPGPKLGQLLEEIKQEVVAGNLENSEAAIGEFLE 396 >gi|148988607|ref|ZP_01820040.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73] gi|148990379|ref|ZP_01821551.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73] gi|168491552|ref|ZP_02715695.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC0288-04] gi|168493459|ref|ZP_02717602.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC3059-06] gi|147924334|gb|EDK75426.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73] gi|147925808|gb|EDK76883.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73] gi|183574130|gb|EDT94658.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC0288-04] gi|183576258|gb|EDT96786.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC3059-06] Length = 394 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 108/409 (26%), Positives = 194/409 (47%), Gaps = 39/409 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IE 251 L+ +S ER + E +KLL A + M + +L S ++L+++ +E Sbjct: 184 TPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQNKLNRLFDLE 241 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + FE + + + ++ +S L +++F+ ++++ LI L Sbjct: 242 TDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFA--KQVQDLLI----------IL 289 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPL 362 ++ E +L K + I L L NL + S IH KK + Sbjct: 290 ALRENGEL-----SKRDCYRFDIDLLLQAENLRQARGKEVNPQAITEKYQSLTIHDKKEI 344 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GD ++K YG PG +G IL + ++ + ++E +H LR+ Sbjct: 345 -QINGDILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|51598959|ref|YP_073147.1| polynucleotide adenylyltransferase [Borrelia garinii PBi] gi|51573530|gb|AAU07555.1| polynucleotide adenylyltransferase [Borrelia garinii PBi] Length = 410 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 114/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLR-SDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + R K V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+++ R+ ED LRILR RF + K I+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNSNKRLAEDALRILRAARFSSTLNFK-IEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE KN I ++ FK F Sbjct: 201 EFHKLLEGKNIQKGIYYLKKVDFFKNFF 228 >gi|260437796|ref|ZP_05791612.1| poly A polymerase [Butyrivibrio crossotus DSM 2876] gi|292809820|gb|EFF69025.1| poly A polymerase [Butyrivibrio crossotus DSM 2876] Length = 404 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 106/384 (27%), Positives = 178/384 (46%), Gaps = 41/384 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++ D DI T+ P V ++F +T + T I +GT+ ++ + +++ Sbjct: 26 VGGCVRDSIICRVPGDWDITTSAKPWEVKKLFRRT----VDTGIEHGTVTVMMGNEGYEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT + D RRDFTINA+ + ++D G D+ + Sbjct: 82 TTYRIDGEYEDSRHPKNVEFTSNLGEDLKRRDFTINAMAYNYSQGIVDMFDGKGDIERKI 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G+ R ED LR+LR RF A G + I + A K + +S ERI +E+ Sbjct: 142 IRCVGNPEERFTEDALRMLRAVRFSAQLGYE-IAEETADAVKKLAGTISKISKERIHTEL 200 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 NK+L + +P + K + L + EI L+ + + E + L+R Sbjct: 201 NKILLSDHP---------DYLMKAMELGITEIVFSALNDLPDKETAMKL----LIRLPKE 247 Query: 270 ISWQDKKSILSMAKKFSLP--REIRYFLISFFNCN--FNQKTLSIPEIKKLFYLYGDKVM 325 + ++ + + KK ++ RE++ + N + + I E K L Sbjct: 248 LVYRYGAVLFELGKKRTVAVLRELKLDNNTIDNTGRLVDMHGMEITEDKPLIRHQASSCG 307 Query: 326 IAKLKIFLALHYN------------NLTHQDTCF--ILQVLSDIIHWKKPLFPLTGDDVV 371 A ++ L Y L Q+ F IL+ D + K+ +TG+D++ Sbjct: 308 AAMYEMVLRFEYEFYMAADDRNKAMALKKQEALFKEILEN-GDCLTLKE--LAVTGNDLI 364 Query: 372 KYGIPPGKKVGNILVHCKQEWINS 395 + GI PGK++GNIL + +N+ Sbjct: 365 EAGIHPGKEIGNILKSMLDDVLNT 388 >gi|219684228|ref|ZP_03539172.1| polynucleotide adenylyltransferase [Borrelia garinii PBr] gi|219672217|gb|EED29270.1| polynucleotide adenylyltransferase [Borrelia garinii PBr] Length = 410 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 114/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLR-SDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + R K V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+++ R+ ED LRILR RF + K I+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNSNKRLEEDALRILRAARFSSTLNFK-IEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE KN I ++ FK F Sbjct: 201 EFHKLLEGKNIQKGIYYLKKVDFFKNFF 228 >gi|320102813|ref|YP_004178404.1| polynucleotide adenylyltransferase region [Isosphaera pallida ATCC 43644] gi|319750095|gb|ADV61855.1| Polynucleotide adenylyltransferase region [Isosphaera pallida ATCC 43644] Length = 471 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 106/187 (56%), Gaps = 10/187 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 GG VRD+L+ L D D+AT P+RV+++F +T + +S+G ++++ K +D+ Sbjct: 52 AGGCVRDTLLGLIPSDYDVATNATPERVLKLFRRT----VNVGLSFGVVRVVAPKGGWDV 107 Query: 92 --TTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQ--QGKVIDYVGGLNDLR 146 T RSD + +DGR V D K D+LRRDFTIN ++ D +VID+VGG +DL Sbjct: 108 EVATFRSDGVYSDGRRPDSVTYGDAKEDALRRDFTINGMFMDPLDHDRVIDFVGGRDDLA 167 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 R ++ IG+ R ED LR++R RF A + + +D A L +++ ERI Sbjct: 168 RRILRAIGNPRDRFTEDKLRLIRAVRFAARF-DLTMDPLTEQAIRDMADQLGVVAFERIA 226 Query: 207 SEINKLL 213 E K+L Sbjct: 227 QEFRKML 233 >gi|291528708|emb|CBK94294.1| uncharacterized domain HDIG [Eubacterium rectale M104/1] Length = 446 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 105/189 (55%), Gaps = 7/189 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDSL+ + QD DI T+ P +V IF T I T I +GT+ ++ +++ Sbjct: 26 VGGCVRDSLLGRTPQDWDITTSAKPAQVKAIFDHT----IDTGIQHGTVTVMLEHVGYEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT + K D RRDFTINA+ + + ++D G+ DL+ Sbjct: 82 TTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNHRAGLVDEFDGIGDLKAHV 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G AH R ED LR+ R RF A G +I++ A + L +S+ERI E+ Sbjct: 142 IRCVGCAHDRFSEDALRMFRAVRFAAQLG-FDIEAQTKAAIKELAPALSKVSAERIQVEL 200 Query: 210 NKLLEAKNP 218 KLL + +P Sbjct: 201 VKLLTSDHP 209 >gi|296876424|ref|ZP_06900476.1| tRNA adenylyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296432714|gb|EFH18509.1| tRNA adenylyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 403 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 15/224 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF +T + Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFDRT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R+ D+ D R + V F R + D RRDFT+NA ++ Sbjct: 68 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGL 187 +G+++D GL DL N+ ++ +G H R ED LRI+R FRF A G E D+ Sbjct: 128 KGEIVDLFHGLEDLENKVLRAVGLPHERFNEDALRIMRGFRFQASLGFELEEATSDAMKE 187 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 A + L+ +S ER + E +KLL + + M + G + Sbjct: 188 CAPL-----LEKISVERTFIEFDKLLLSPYWRQGVEAMLSSGAY 226 >gi|109947332|ref|YP_664560.1| poly(A) polymerase [Helicobacter acinonychis str. Sheeba] gi|109714553|emb|CAJ99561.1| poly(A) polymerase [Helicobacter acinonychis str. Sheeba] Length = 385 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 102/194 (52%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD LM + +D D+ + L + K ++V+ T I +GTI + K ++ Sbjct: 24 LVGGCVRDCLMGFAPKDYDLTSNALVSESKELLLKHHFRVLETGIKHGTITALKNNKSYE 83 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I R ++VF+ D RRDF++NA+ +ID G N + NR Sbjct: 84 ITTFRVEKGHIKHRRPKELVFSAHLTDDLKRRDFSMNAIAYSPTKGLIDPFKGQNAIENR 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +G R ED LRILR RF A G K I+++ A K LK LS ER+ SE Sbjct: 144 MIECVGKVRLRFFEDALRILRALRFGATLGFK-IETNTKRAVFACKDLLKHLSKERLQSE 202 Query: 209 INKLLEAKNPLNAI 222 +NKLL KN I Sbjct: 203 LNKLLMGKNAYGVI 216 >gi|219685520|ref|ZP_03540337.1| polynucleotide adenylyltransferase [Borrelia garinii Far04] gi|219672919|gb|EED29941.1| polynucleotide adenylyltransferase [Borrelia garinii Far04] Length = 410 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 114/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLR-SDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + R K V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+++ R+ ED LRILR RF + K I+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNSNKRLEEDALRILRAARFSSTLNFK-IEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE KN I ++ FK F Sbjct: 201 EFHKLLEGKNIQKGIYYLKKVDFFKNFF 228 >gi|254302647|ref|ZP_04970005.1| tRNA adenylyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322839|gb|EDK88089.1| tRNA adenylyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 451 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 15/226 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +DID T + + + +F + K T Sbjct: 14 IEILNKLNKY-GKGYIVGGAIRDILLGLEPKDIDFTTNLPYETLKDLFKECNPK--ETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLIT--DG-----RYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D DG KV F D K D RRDFTINA+ Sbjct: 71 SFGVLRIRVNNIDYEIAKFREDNYEEKDGMKIIPEEKKVSFVDDIKNDLARRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGL 187 ++ +++D G D+ N+ I F+G+A RI+ED LR+LR FRF + N S+ Sbjct: 131 YNETEEIVDLYNGQKDIENKVINFVGNAEERIIEDPLRVLRAFRFMSRL---NFSLSENT 187 Query: 188 VASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + +IK +K LK + ERI E +KLL +N N + M + G+ + Sbjct: 188 IEAIKKQKYLLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLE 233 >gi|304385035|ref|ZP_07367381.1| poly A polymerase [Pediococcus acidilactici DSM 20284] gi|304329229|gb|EFL96449.1| poly A polymerase [Pediococcus acidilactici DSM 20284] Length = 402 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 117/426 (27%), Positives = 182/426 (42%), Gaps = 74/426 (17%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N+L + + ++ VGG+VRD+L+ + D+DIAT+ P + +IF +T + T I Sbjct: 16 NVLQQIEEAGYEAYFVGGSVRDTLLGKPIHDVDIATSAYPAEIKQIFKRT----VDTGIE 71 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + ++ITT R++ R +V F R K D +RRDFTINA + Sbjct: 72 HGTVMVLTGEHSYEITTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALREDRT 131 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 VID GL DL+ + I+ +GD R ED LR++R RF + + I+ L A Sbjct: 132 VIDVFDGLTDLKQQKIRAVGDPKARFHEDALRMMRGVRFASQL-DFVIEPQTLAAIKMNS 190 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAI-------VHMYNGGIFKEIFLDVQEISLDQLS 247 L +S ER E K++ NP + +H Y G+ + + +QE+ LS Sbjct: 191 SLLAKISVERTLVEFQKMMLGTNPNRGLADMVATRLHEYCPGLAGKGAV-LQELLAYPLS 249 Query: 248 QVIEAEQVF-------------------EWKI-DSLLRFIVLISWQDKKSILSMAKKFSL 287 Q+ QV+ +WK + L+R + +LSM + Sbjct: 250 QLENETQVWALLAWMLQLRGAQINRFLKQWKTSNELIRHVTATV-----RVLSMLDSTGV 304 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 R I F N + V +AK+ L ++ DT Sbjct: 305 DR------IILFEAGANN--------------VANAVRVAKI-----LGHDAQGWLDTYQ 339 Query: 348 ILQVLSDIIHWKKP-LFPLTGDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 LQ+ K P +TG D++ I PG ++G IL K IN E L Sbjct: 340 TLQI-------KSPKELAVTGKDLIANQIITPGPQMGRILNSLKAMVINDQLPNQPEALF 392 Query: 406 HLLRKL 411 RKL Sbjct: 393 TAARKL 398 >gi|168217734|ref|ZP_02643359.1| polyA polymerase family protein [Clostridium perfringens NCTC 8239] gi|182380205|gb|EDT77684.1| polyA polymerase family protein [Clostridium perfringens NCTC 8239] Length = 422 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 115/418 (27%), Positives = 200/418 (47%), Gaps = 29/418 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT I + Sbjct: 10 ILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKH 65 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K +++TT R D + + + V F + + D RRDFTINA+ Sbjct: 66 GTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGF 125 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK 194 D G DL+N+ I+ +GD R ED LR+LR RF N + L A SI+ Sbjct: 126 KDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKN 182 Query: 195 -KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K +K +S ERI SE K++ + +P ++ + G + + + + L + + Sbjct: 183 FKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYDDI 242 Query: 254 QVFEWKIDSLLR----FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQK 306 I+SL + + + ++ S ++ K ++ ++++Y + + CN N Sbjct: 243 HDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENIN 302 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWKK 360 +S +K L + V + L L + L++ D C + +SDI+ K+ Sbjct: 303 NISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILASKE 362 Query: 361 PLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ + Sbjct: 363 PIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQFYS 420 >gi|169335807|ref|ZP_02863000.1| hypothetical protein ANASTE_02233 [Anaerofustis stercorihominis DSM 17244] gi|169258545|gb|EDS72511.1| hypothetical protein ANASTE_02233 [Anaerofustis stercorihominis DSM 17244] Length = 439 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 13/211 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL N ++ IVGG VRD L+ + +D DI T P M +F + YK IPT I Y Sbjct: 12 ILDKFNNNGYEAYIVGGCVRDLLLGKTPKDYDITTNASPKETMELFKE--YKTIPTGIKY 69 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAK------VVFTRDWKADSLRRDFTINALYADQ 131 GT+ +I ++TT R + G+Y K V F + D RRDFTINA+ ++ Sbjct: 70 GTVTVIINNTPIEVTTFRKE----GKYIKNRKPESVEFLSSIEEDLSRRDFTINAMAYNE 125 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +ID G DL I+ +GD R ED +RILR +RF Y + I+++ L A Sbjct: 126 KSGLIDLFEGRQDLEKGIIRVVGDGKERFKEDAIRILRAYRFMGRY-DFEIENNTLNAIK 184 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 + L ++ ERI EI ++ E+ +N + Sbjct: 185 ENMHLLNNVAKERILPEIKEIFESDMDINKM 215 >gi|291557511|emb|CBL34628.1| uncharacterized domain HDIG [Eubacterium siraeum V10Sc8a] Length = 438 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 6/195 (3%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 L N G + C VGG VRD L+ +D D+ T+ LP++++ +F Y+++ + +GT+ Sbjct: 14 LNNNGYEAYC-VGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFDG--YRLLKVGLKHGTV 70 Query: 81 KIICRKKYFDITTLRSD-LITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 +I K +ITT R D TD R+ +KV FT + D RRD TINA+ + + ++D Sbjct: 71 TVIINKHPVEITTYRIDGEYTDHRHPSKVGFTPNLADDLARRDLTINAIAYNDKVGMVDL 130 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG DL+N I+ +GD R ED LRILR RF + YG +ID + A + K L Sbjct: 131 YGGAEDLKNGIIRCVGDPMKRFDEDGLRILRALRFASRYG-FSIDKETSDAIHRQKFLLS 189 Query: 199 ILSSERIWSEINKLL 213 +S+ERI SE+ +L Sbjct: 190 FISAERINSELCGIL 204 >gi|216264893|ref|ZP_03436885.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 156a] gi|223889371|ref|ZP_03623957.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 64b] gi|225548827|ref|ZP_03769804.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 94a] gi|215981366|gb|EEC22173.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 156a] gi|223885057|gb|EEF56161.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 64b] gi|225370430|gb|EEG99866.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 94a] Length = 410 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 113/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRAPKQVEYTKNLLKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +TI+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KTIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|18309004|ref|NP_560938.1| polyA polymerase family protein [Clostridium perfringens str. 13] gi|18143679|dbj|BAB79728.1| probable polynucleotide adenylyltransferase [Clostridium perfringens str. 13] Length = 424 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 115/418 (27%), Positives = 201/418 (48%), Gaps = 29/418 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT I + Sbjct: 12 ILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKH 67 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K +++TT R D + + + V F + + D RRDFTINA+ Sbjct: 68 GTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGF 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK 194 D G DL+N+ I+ +GD R ED LR+LR RF N + L A SI+ Sbjct: 128 KDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKN 184 Query: 195 -KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K +K +S ERI SE K++ + +P ++ + G + + + + L + + Sbjct: 185 FKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYDDI 244 Query: 254 QVFEWKIDSLLRFIVL----ISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQK 306 I+SL + + + + ++ S ++ K ++ ++++Y + + CN N Sbjct: 245 HDTYGLINSLPKKLHIRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENIN 304 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWKK 360 +S +K L + V + L L + L++ D C + +SDI+ K+ Sbjct: 305 NISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILASKE 364 Query: 361 PLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ + Sbjct: 365 PIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQFYS 422 >gi|255656450|ref|ZP_05401859.1| putative poly(A) polymerase [Clostridium difficile QCD-23m63] gi|296450104|ref|ZP_06891866.1| polyA polymerase [Clostridium difficile NAP08] gi|296878485|ref|ZP_06902491.1| polyA polymerase [Clostridium difficile NAP07] gi|296261112|gb|EFH07945.1| polyA polymerase [Clostridium difficile NAP08] gi|296430569|gb|EFH16410.1| polyA polymerase [Clostridium difficile NAP07] Length = 445 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 9/199 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F KT IPT I + Sbjct: 13 IIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQH 68 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ + + + Sbjct: 69 GTVTVMVEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSETGL 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G D++N+ I+ +G+ R ED LR+LR RF A NID +G SI K Sbjct: 129 VDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLN-FNID-EGTEQSIHKKS 186 Query: 196 GL-KILSSERIWSEINKLL 213 L K +S ERI +E NK+L Sbjct: 187 DLIKNVSIERIQTEFNKIL 205 >gi|330443931|ref|YP_004376917.1| poly A polymerase [Chlamydophila pecorum E58] gi|328807041|gb|AEB41214.1| poly A polymerase [Chlamydophila pecorum E58] Length = 410 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 111/383 (28%), Positives = 183/383 (47%), Gaps = 21/383 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L N G ++ VGG VRD LM + DIDIAT P V IFS VI ++ Sbjct: 13 LVKLRNAGY-QAYFVGGCVRDMLMGKPMVDIDIATDAPPVIVSTIFS----DVISIGAAF 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 G I + F++ T R+D TDGR+ + V + D+LRRDF+IN +Y D + K+ Sbjct: 68 GIIVVKLEGYLFEVATFRNDGQYTDGRHPQQVKFSSMREDALRRDFSINGIYYDPFEDKL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D+V G+ D+ + I+ IG R ED LRILR R FA E +D A IK Sbjct: 128 FDFVEGIRDIEKKVIRAIGHPRLRFAEDKLRILRAIR-FASSLEFTLDPATERALIKEAP 186 Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-AE 253 L +S ERIW E+ K++++ +P A+V + + IF ++++I L I Sbjct: 187 TLVSAVSPERIWQELKKMMKS-HPYQAMVLLLKLKVLVTIFPELRDIPYGILRSTIAFLN 245 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 ++ K +L + L +++ + + + + + +++ + + +S+ + Sbjct: 246 KLNPQKFPEILLLLPLFQGVPEEATSAAFSRLKVSNKELRLIEAWYKALPHFQNISMSRV 305 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKKPLFPL-T 366 +L + L+IF AL + Q FI +V L I K PL + Sbjct: 306 FWAHFLASPSASMF-LEIFSALQKDPSKQQH--FIARVQELETRLEKFILRIKTASPLIS 362 Query: 367 GDDVVKYGIPPGKKVGNILVHCK 389 D++ GI PG+ +G++L + Sbjct: 363 APDLMAKGIAPGRLLGDLLKEAE 385 >gi|157692744|ref|YP_001487206.1| tRNA CCA-pyrophosphorylase [Bacillus pumilus SAFR-032] gi|167006454|sp|A8FEH9|CCA_BACP2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|157681502|gb|ABV62646.1| bifunctional tRNA adenylyltransferase/tRNA cytidylyltransferase [Bacillus pumilus SAFR-032] Length = 400 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL L++ ++ VGGAVRD L+ + DIDIAT PD V +F KT + Sbjct: 9 IPILHTLHEHGYQAYFVGGAVRDVLLGREIGDIDIATDATPDTVESLFEKT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++TT R++ + R +V F K D LRRD TINA+ D G Sbjct: 65 EHGTVIVLHDGMSYEVTTFRTESEYEDFRRPKEVAFITSLKEDLLRRDLTINAMAMDING 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID+VGG D+ + I+ +GD R ED LR++R RF + G + ++ A K Sbjct: 125 EIIDHVGGKQDIERKRIQTVGDPACRFQEDALRMMRAIRFLSQLG-FELAAETAEAMEKD 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K L +S ER E+ KLL+ + AI + + +++E+ Sbjct: 184 KHLLANISVERKKIEMEKLLKGRYCERAIKVLISTKLYEEL 224 >gi|325686007|gb|EGD28067.1| poly A polymerase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 409 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T I Sbjct: 27 MPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTGI 82 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++QG Sbjct: 83 QHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQG 142 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 143 EIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLS-FSLEEKTRQAIINN 201 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + L +S ERI E KL K+ A G+ +E Sbjct: 202 HELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEE 241 >gi|170764104|ref|ZP_02632218.2| polyA polymerase family protein [Clostridium perfringens E str. JGS1987] gi|170662329|gb|EDT15012.1| polyA polymerase family protein [Clostridium perfringens E str. JGS1987] Length = 424 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 115/418 (27%), Positives = 200/418 (47%), Gaps = 29/418 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT I + Sbjct: 12 ILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKH 67 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K +++TT R D + + + V F + + D RRDFTINA+ Sbjct: 68 GTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGF 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK 194 D G DL+N+ I+ +GD R ED LR+LR RF N + L A SI+ Sbjct: 128 KDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKN 184 Query: 195 -KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K +K +S ERI SE K++ + +P ++ + G + + + + L + + Sbjct: 185 FKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYDDI 244 Query: 254 QVFEWKIDSLLR----FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQK 306 I+SL + + + ++ S ++ K ++ ++++Y + + CN N Sbjct: 245 HDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENIN 304 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWKK 360 +S +K L + V + L L + L++ D C + +SDI+ K+ Sbjct: 305 NISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILASKE 364 Query: 361 PLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ + Sbjct: 365 PIFIKDLAITGNDLITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQFYS 422 >gi|261207587|ref|ZP_05922272.1| polynucleotide adenylyltransferase [Enterococcus faecium TC 6] gi|289565099|ref|ZP_06445552.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium D344SRF] gi|294614839|ref|ZP_06694734.1| cca-adding enzyme [Enterococcus faecium E1636] gi|294617518|ref|ZP_06697149.1| cca-adding enzyme [Enterococcus faecium E1679] gi|260077970|gb|EEW65676.1| polynucleotide adenylyltransferase [Enterococcus faecium TC 6] gi|289163106|gb|EFD10953.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium D344SRF] gi|291592301|gb|EFF23915.1| cca-adding enzyme [Enterococcus faecium E1636] gi|291596258|gb|EFF27520.1| cca-adding enzyme [Enterococcus faecium E1679] Length = 402 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N A +H + Sbjct: 189 HELLGKISVERINVEFIKML-LGNERAAGIHAF 220 >gi|258616510|ref|ZP_05714280.1| poly A polymerase [Enterococcus faecium DO] Length = 402 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLSEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N A +H + Sbjct: 189 HELLGKISVERINVEFIKML-LGNERAAGIHAF 220 >gi|307705974|ref|ZP_07642799.1| RNA nucleotidyltransferase [Streptococcus mitis SK564] gi|307620484|gb|EFN99595.1| RNA nucleotidyltransferase [Streptococcus mitis SK564] Length = 394 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 129/246 (52%), Gaps = 9/246 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T I Sbjct: 9 LPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRT----ADIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + +++TT R+ D+ D R V F R + D RRDFT+NA D+ G Sbjct: 65 EHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 125 EIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEPETFKAMKTL 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L+ +S ER + E +KLL A + M + +L S D+L+++ + E Sbjct: 184 TPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYD--YLPDMAASQDKLNRLFDLE 241 Query: 254 QVFEWK 259 F ++ Sbjct: 242 TDFTFE 247 >gi|257878003|ref|ZP_05657656.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,230,933] gi|257881211|ref|ZP_05660864.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,502] gi|257889798|ref|ZP_05669451.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,410] gi|257892265|ref|ZP_05671918.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,408] gi|260559053|ref|ZP_05831239.1| polynucleotide adenylyltransferase [Enterococcus faecium C68] gi|293563404|ref|ZP_06677853.1| cca-adding enzyme [Enterococcus faecium E1162] gi|293568062|ref|ZP_06679400.1| cca-adding enzyme [Enterococcus faecium E1071] gi|294621944|ref|ZP_06701092.1| cca-adding enzyme [Enterococcus faecium U0317] gi|257812231|gb|EEV40989.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,230,933] gi|257816869|gb|EEV44197.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,502] gi|257826158|gb|EEV52784.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,410] gi|257828644|gb|EEV55251.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,408] gi|260074810|gb|EEW63126.1| polynucleotide adenylyltransferase [Enterococcus faecium C68] gi|291589283|gb|EFF21093.1| cca-adding enzyme [Enterococcus faecium E1071] gi|291598493|gb|EFF29562.1| cca-adding enzyme [Enterococcus faecium U0317] gi|291604665|gb|EFF34150.1| cca-adding enzyme [Enterococcus faecium E1162] Length = 402 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N A +H + Sbjct: 189 HELLGKISVERINVEFIKML-LGNERAAGIHAF 220 >gi|293556746|ref|ZP_06675309.1| cca-adding enzyme [Enterococcus faecium E1039] gi|291601078|gb|EFF31367.1| cca-adding enzyme [Enterococcus faecium E1039] Length = 402 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N A +H + Sbjct: 189 HELLGKISVERINVEFIKML-LGNERAAGIHAF 220 >gi|257884874|ref|ZP_05664527.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,501] gi|257820712|gb|EEV47860.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,501] Length = 402 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N A +H + Sbjct: 189 HELLGKISVERINVEFIKML-LGNERAAGIHAF 220 >gi|229918726|ref|YP_002887372.1| polynucleotide adenylyltransferase region [Exiguobacterium sp. AT1b] gi|229470155|gb|ACQ71927.1| Polynucleotide adenylyltransferase region [Exiguobacterium sp. AT1b] Length = 379 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 8/220 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ + + ++ IVGGAVRD ++ DID+AT++ P+ VM +F K+ +PT I Sbjct: 9 QIIDTIEQHGGEAYIVGGAVRDYVLGSLPDDIDLATSLFPEEVMALFPKS----VPTGIE 64 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ +I F++TT RS+ +D R V + D LRRDFT+NA+ A G+ Sbjct: 65 HGTVTVILDHHPFEVTTFRSEGSYSDSRRPDHVALGVSLEEDLLRRDFTMNAM-AFHDGR 123 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 V+D GG +DL R I+ +G R ED LRI+R RF + D AS Sbjct: 124 VVDLFGGQHDLEERIIRTVGSPFERFGEDALRIMRALRFMSQLDFTLHDELREAASGLGH 183 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K L+ ++ ERI E KLL A+ M GI + + Sbjct: 184 K-LEQIAMERIAIEFEKLLTGPAYKKALGEMVELGIHRHL 222 >gi|104774167|ref|YP_619147.1| tRNA CCA-pyrophosphorylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122397131|sp|Q1G9U3|CCA_LACDA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|103423248|emb|CAI98081.1| tRNA nucleotidyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 396 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T I Sbjct: 14 MPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++QG Sbjct: 70 QHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 130 EIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLS-FSLEEKTRQAIINN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + L +S ERI E KL K+ A G+ +E Sbjct: 189 HELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEE 228 >gi|295398570|ref|ZP_06808602.1| poly A polymerase [Aerococcus viridans ATCC 11563] gi|294973171|gb|EFG48966.1| poly A polymerase [Aerococcus viridans ATCC 11563] Length = 426 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/197 (36%), Positives = 110/197 (55%), Gaps = 7/197 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ LN+ ++ VGGAVRD L++L + D+DIAT+ P V +F + + + Sbjct: 13 IIHTLNEAGYEAYFVGGAVRDLLLDLPIHDVDIATSAYPAEVQALFPRH----FDVGLDH 68 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTI + + ++ITT R++ R KV F ++ + D LRRDFTINAL + K+ Sbjct: 69 GTIMVWFEGETYEITTFRTESTYQDYRRPDKVTFVQNLEEDLLRRDFTINALAMNPDHKI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY G DL ++ I+ +G+ H R ED LR++R R FA + I + LVA + Sbjct: 129 VDYFHGQKDLADKVIRAVGNPHDRFNEDGLRMMRGVR-FASQLDFQIAPETLVAIAENAG 187 Query: 196 GLKILSSERIWSEINKL 212 L ++ ERI E+NKL Sbjct: 188 ILVHIAVERIAVEMNKL 204 >gi|256851142|ref|ZP_05556531.1| tRNA adenylyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260660566|ref|ZP_05861481.1| tRNA adenylyltransferase [Lactobacillus jensenii 115-3-CHN] gi|282934524|ref|ZP_06339778.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1] gi|297206009|ref|ZP_06923404.1| tRNA adenylyltransferase [Lactobacillus jensenii JV-V16] gi|256616204|gb|EEU21392.1| tRNA adenylyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260548288|gb|EEX24263.1| tRNA adenylyltransferase [Lactobacillus jensenii 115-3-CHN] gi|281301417|gb|EFA93707.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1] gi|297149135|gb|EFH29433.1| tRNA adenylyltransferase [Lactobacillus jensenii JV-V16] Length = 396 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 111/408 (27%), Positives = 189/408 (46%), Gaps = 42/408 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + ++ L + ++ VGG+VRD L+N + D+DIAT+ P+ V ++F ++ I T I Sbjct: 14 LPVVQTLTQAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQLFERS----IDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R++ R V F ++ + D RRDFTINAL D+ G Sbjct: 70 QHGTVTVLYNDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTINALAMDEYG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D GL+DL IK +GD R ED LR++R RF + + +++ A Sbjct: 130 NIHDLFNGLDDLNQGLIKAVGDPEKRFNEDALRMMRAVRFMSQL-KFSLEEKTRQAICDH 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + L +S ERI E K+ + +A ++FLD QLS+ + Sbjct: 189 HELLSKISVERIREEFVKMCVGPHARSAF----------QVFLDT------QLSEEVPD- 231 Query: 254 QVFEWKIDSLLRFIVLI-SWQDKKSILS-MAKKFSLPRE-IRYFLISFFNCNFNQKTLSI 310 F K + L F L S + S+ + +A LP E I F+ + N NQ ++ Sbjct: 232 --FRGKKEQLSVFPSLTFSPSTEASVWAIIAILLKLPNEQIPAFMRDWKNS--NQMARNV 287 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL--QVLSDIIHWKKPLFPLT-- 366 EI F L D + ++FLA ++ D IL V S+ + + P+ Sbjct: 288 EEIVFFFDLLSDHSP-SDYELFLAGQDTVMSACDVARILGQPVNSEAMIDRYVALPIKNN 346 Query: 367 ------GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G ++++GI PG +G +L + ++ +E + + + Sbjct: 347 KELVIDGSTLIEWGIKPGPSLGEMLAKITEAVVDGKVANEEEAIKNFI 394 >gi|314938015|ref|ZP_07845325.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133a04] gi|314941999|ref|ZP_07848860.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133C] gi|314948748|ref|ZP_07852120.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0082] gi|314951766|ref|ZP_07854805.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133A] gi|314991827|ref|ZP_07857285.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133B] gi|314995868|ref|ZP_07860955.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133a01] gi|313589972|gb|EFR68817.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133a01] gi|313593638|gb|EFR72483.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133B] gi|313596045|gb|EFR74890.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133A] gi|313599251|gb|EFR78096.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133C] gi|313642590|gb|EFS07170.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133a04] gi|313644814|gb|EFS09394.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0082] Length = 425 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 37 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 92 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R D RRDFTINA + G Sbjct: 93 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKEDG 152 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 153 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 211 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N A +H + Sbjct: 212 HELLGKISVERINVEFIKML-LGNERAAGIHAF 243 >gi|307244320|ref|ZP_07526434.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptostreptococcus stomatis DSM 17678] gi|306492286|gb|EFM64325.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptostreptococcus stomatis DSM 17678] Length = 420 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 113/409 (27%), Positives = 197/409 (48%), Gaps = 45/409 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRDS+M D DI T LPD ++ IF ++ IPT I +GT+ ++ + Sbjct: 29 EAFVVGGCVRDSVMGKIPHDWDITTNALPDDIVNIFPRS----IPTGIQHGTVTVLIDDE 84 Query: 88 YFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 F++TT R D + R V ++++ + D RRDFTINA+ + Q ++D GGL+D+ Sbjct: 85 AFEVTTYRLDGDYLDMRRPRSVSYSQNLEDDLSRRDFTINAMAYNDQVGLVDKFGGLDDI 144 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + ++ +G+ R ED LRILR RF A +I+ + + + I+ ++ +S ERI Sbjct: 145 EKKLVRCVGNPDKRFNEDALRILRALRFSAKLF-FDIEGETMDSIIRNSVNIEKVSMERI 203 Query: 206 WSEINKLLEAK-------NPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQVIEAEQV- 255 +E ++ A N L+ +++ F E L I +D + ++A + Sbjct: 204 NTEFEGIIRANTNKLSLINDLDIRSYLFGDFCFDEEDLTRAMILEDIDSHEEYLQAAKRA 263 Query: 256 -----FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLS 309 +E + +LL+F K S M K + +R + N N + L Sbjct: 264 MIFSHYEGDLKALLKFF-------KYSKKDMEKTLFIWNALRDHMYEDLLNENATRDDLR 316 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLAL--HYNNLTHQDTCFILQVLSDIIHWKKPL----F 363 + IK + D ++ AK I+ + Y N+ I + +DII + Sbjct: 317 LT-IKYILRDAKDNIL-AKYAIYAKIIEKYANIG-----LIFNLFNDIIETGECFSVSHL 369 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ-EDLHHLLRKL 411 ++G D++ G+ GK+VG IL+ + S QL++ E L ++RK+ Sbjct: 370 QISGRDIIDEGLARGKEVG-ILLEALLCQVISQPQLNEKERLLEMVRKI 417 >gi|240144360|ref|ZP_04742961.1| polyA polymerase family protein [Roseburia intestinalis L1-82] gi|257203611|gb|EEV01896.1| polyA polymerase family protein [Roseburia intestinalis L1-82] Length = 446 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 3/189 (1%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD++++ + D DI T P++V IF++ I T I +GT+ ++ + F++ Sbjct: 26 VGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKNIHTIDTGIQHGTVTVMVEHEGFEV 85 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT D RRDFTINA+ + + +ID G+ DL Sbjct: 86 TTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTINAMAYNDKNGLIDAFDGVGDLERGV 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR+LR RF A G +I+++ A +K + +S+ERI +E+ Sbjct: 146 IRCVGCAMERFSEDALRMLRAVRFAAQLG-FDIEAETKEAMVKLAPNIAKVSAERIQTEL 204 Query: 210 NKLLEAKNP 218 KL+ + +P Sbjct: 205 VKLITSAHP 213 >gi|312149496|gb|ADQ29567.1| polynucleotide adenylyltransferase [Borrelia burgdorferi N40] Length = 410 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 114/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD ++N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLMLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A +V +T++ D RRDFTINA+ + +IDY G DL Sbjct: 82 ITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMNIFNFNIIDYYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R+ ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNPNKRLEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|306833732|ref|ZP_07466858.1| polyA polymerase [Streptococcus bovis ATCC 700338] gi|304424069|gb|EFM27209.1| polyA polymerase [Streptococcus bovis ATCC 700338] Length = 401 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 7/205 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF +T + Sbjct: 11 QEALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIFHRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ ++ITT R+ D+ D R + V F R + D RRDFT+NA D Sbjct: 67 VGIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G +ID GL DL + ++ +G+ R ED LRI+R FRF A + +I+ D A Sbjct: 127 ETGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASL-DFDIEPDTFTAM 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 186 AAHAPLLEKISVERSFIEFDKLLMA 210 >gi|69250632|ref|ZP_00605176.1| Polynucleotide adenylyltransferase [Enterococcus faecium DO] gi|68193917|gb|EAN08494.1| Polynucleotide adenylyltransferase [Enterococcus faecium DO] Length = 249 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 8/213 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I I Sbjct: 14 IPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F R D RRDFTINA + G Sbjct: 70 EHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLSEDLKRRDFTINAFALKEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 130 EIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKEN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L +S ERI E K+L N A +H + Sbjct: 189 HELLGKISVERINVEFIKML-LGNERAAGIHAF 220 >gi|313123922|ref|YP_004034181.1| cca-adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280485|gb|ADQ61204.1| CCA-adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 396 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T I Sbjct: 14 MPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++QG Sbjct: 70 QHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 130 EIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLS-FSLEEKTRQAIINN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + L +S ERI E KL K+ A G+ +E Sbjct: 189 HELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEE 228 >gi|72163501|ref|YP_291158.1| metal-dependent phosphohydrolase [Thermobifida fusca YX] gi|71917233|gb|AAZ57135.1| metal-dependent phosphohydrolase [Thermobifida fusca YX] Length = 552 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 19/259 (7%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGG VRD+L+ V DID+ T +P+RV+ + V I +GT+ + + Sbjct: 106 AIVGGPVRDALLGRPVHDIDLTTDAVPERVLELVDGWADAVWTIGIEFGTVGLRKNGRQV 165 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 +ITT RS+ R +V + D +RRDFT+NA+ G+ +D GGL DL + Sbjct: 166 EITTYRSESYQVKSRKPEVSYGTSLYEDLVRRDFTVNAMAVRVPGGEFVDPFGGLRDLAD 225 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 RT++ G +D LRI+R RF A G ++D A + L+I+S+ERI Sbjct: 226 RTLRTPGKPEDSFNDDPLRIMRGIRFAAQLG-FSVDEKVAAAMTAMAERLRIVSAERIRD 284 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVIE 251 E+ KL+ + NP + M + G+ + DV E SL L Q ++ Sbjct: 285 ELTKLILSPNPRLGVSLMTDLGVANYVLPEIPKLKLTVDEHHRHKDVYEHSLTVLDQAVD 344 Query: 252 AEQVFEWKIDSLLRFIVLI 270 E+ + D +LR L+ Sbjct: 345 LERARGMEPDLVLRLAALL 363 >gi|317010861|gb|ADU84608.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori SouthAfrica7] Length = 576 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 109/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I R ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRVEKGHIKHRRPKELVFSTHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I +GDA R ED LRILR RF A G K I + A Sbjct: 125 SPTKGLIDPFKGQNAIENQVIACVGDARLRFFEDALRILRALRFSATLGFK-IAASTKKA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|312898263|ref|ZP_07757654.1| HD domain protein [Megasphaera micronuciformis F0359] gi|310620760|gb|EFQ04329.1| HD domain protein [Megasphaera micronuciformis F0359] Length = 477 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 4/200 (2%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SI 75 ILS LN+ ++ IVGGAVRD LM+ D DI T+ P+ ++ K ++ I + Sbjct: 7 TILSGLNRAGYEAYIVGGAVRDKLMHKEPHDYDITTSARPEEIVATARKEGWQCIESVGR 66 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 S+G I+ + +++ T R + + R K+ + + + D RRDFT+NAL D++G Sbjct: 67 SFGVSLILIGGQTYEVATFRDESYGEDSHRPEKIWYAQTLQEDVKRRDFTVNALAQDKEG 126 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ DYVGG+ D+ +T++ +GDA R ED LR+ R RF + + + A A Sbjct: 127 RIYDYVGGVKDISKKTLRAVGDASVRFQEDALRLFRLCRFAGKL-DFTVHKETQRAMPTA 185 Query: 194 KKGLKILSSERIWSEINKLL 213 + +K LS+ER+ +EI +LL Sbjct: 186 FERVKGLSAERVVAEIERLL 205 >gi|291523824|emb|CBK89411.1| uncharacterized domain HDIG [Eubacterium rectale DSM 17629] Length = 446 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 105/189 (55%), Gaps = 7/189 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDSL+ + QD DI T+ P +V IF T I T I +GT+ ++ +++ Sbjct: 26 VGGCVRDSLLGRTPQDWDITTSAKPAQVKVIFDHT----IDTGIQHGTVTVMLEHVGYEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT + K D RRDFTINA+ + + ++D G+ DL+ Sbjct: 82 TTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNHRAGLVDEFDGIADLKAHV 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G AH R ED LR+ R RF A G +I++ A + L +S+ERI E+ Sbjct: 142 IRCVGCAHDRFSEDALRMFRAVRFAAQLG-FDIEAQTKAAIKELAPALSKVSAERIQVEL 200 Query: 210 NKLLEAKNP 218 KLL + +P Sbjct: 201 VKLLTSDHP 209 >gi|291535589|emb|CBL08701.1| uncharacterized domain HDIG [Roseburia intestinalis M50/1] Length = 446 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 3/189 (1%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD++++ + D DI T P++V IF++ I T I +GT+ ++ + F++ Sbjct: 26 VGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKNIHTIDTGIQHGTVTVMVEHEGFEV 85 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT D RRDFTINA+ + + +ID G+ DL Sbjct: 86 TTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTINAMAYNDKNGLIDAFDGVGDLERGV 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR+LR RF A G +I+++ A +K + +S+ERI +E+ Sbjct: 146 IRCVGCAMERFSEDALRMLRAVRFAAQLG-FDIEAETKEAMVKLAPDIAKISAERIQTEL 204 Query: 210 NKLLEAKNP 218 KL+ + +P Sbjct: 205 VKLITSAHP 213 >gi|291540833|emb|CBL13944.1| uncharacterized domain HDIG [Roseburia intestinalis XB6B4] Length = 446 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 3/189 (1%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD++++ + D DI T P++V IF++ I T I +GT+ ++ + F++ Sbjct: 26 VGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKNIHTIDTGIQHGTVTVMVEHEGFEV 85 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT D RRDFTINA+ + + +ID G+ DL Sbjct: 86 TTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTINAMAYNDKNGLIDAFDGVGDLERGV 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR+LR RF A G +I+++ A +K + +S+ERI +E+ Sbjct: 146 IRCVGCAMERFSEDALRMLRAVRFAAQLG-FDIEAETKEAMVKLAPDIAKISAERIQTEL 204 Query: 210 NKLLEAKNP 218 KL+ + +P Sbjct: 205 VKLITSAHP 213 >gi|242373766|ref|ZP_04819340.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis M23864:W1] gi|242348503|gb|EES40105.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis M23864:W1] Length = 404 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 7/188 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD LM + DIDI T+ PD + IF KT IP +GTI ++ + +++ Sbjct: 30 VGGSVRDYLMGREIHDIDITTSATPDEIEDIFDKT----IPIGKEHGTINVVYNDENYEV 85 Query: 92 TTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R+ D + R ++V F RD D RRDFTINA+ D DY G +D++ + Sbjct: 86 TTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTINAIAMDTNYNTYDYFDGEDDIKAKQ 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LRI+R RF + + I ++ A ++ LS ERI E+ Sbjct: 146 IRTVGVARERFEEDALRIIRGLRFQSQLNFQ-IVNETFEAMATQISDIQYLSIERIVVEL 204 Query: 210 NKLLEAKN 217 KL+ N Sbjct: 205 KKLINGIN 212 >gi|225017536|ref|ZP_03706728.1| hypothetical protein CLOSTMETH_01463 [Clostridium methylpentosum DSM 5476] gi|224949686|gb|EEG30895.1| hypothetical protein CLOSTMETH_01463 [Clostridium methylpentosum DSM 5476] Length = 449 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 109/206 (52%), Gaps = 15/206 (7%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 LS L ++ IVGG VRD L+ D DI T+ LP MR F+ Y +I T + +G Sbjct: 13 LSKLRACGYEAYIVGGCVRDLLLGWEPDDYDITTSALPFETMRCFAG--YHIIETGVKHG 70 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQQ 132 T+ + +ITT R DG+Y+ V FTR + D RRDFTINA+ Sbjct: 71 TVTAVIDGMPLEITTYR----IDGQYSDNRRPDSVTFTRSLREDLARRDFTINAMAYSPS 126 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + DY GG DL+++ I+ +GD R ED LRILR RF + G + A++ Sbjct: 127 NGLQDYFGGQQDLKDQMIRCVGDPQTRFEEDALRILRAVRFSSVLGFGMEPT--TAAALL 184 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKN 217 ++GL + ++ ER+ E+NKLL ++ Sbjct: 185 TRRGLLVHIARERVQVELNKLLLGRD 210 >gi|308174036|ref|YP_003920741.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307606900|emb|CBI43271.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328552838|gb|AEB23330.1| tRNA CCA-pyrophosphorylase [Bacillus amyloliquefaciens TA208] gi|328912366|gb|AEB63962.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens LL3] Length = 396 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 118/221 (53%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL L K ++ VGGAVRDS M + D+DIAT+ P+ V R+F +T + Sbjct: 9 LPILHHLMKAGHQAYFVGGAVRDSYMKRKIGDVDIATSASPNEVERLFERT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + + +++TT R++ D R + V F D RRD TINA+ +G Sbjct: 65 EHGTVIVLWKDETYEVTTFRAESEYKDYRRPEAVRFITSLSEDLKRRDLTINAMAMSAEG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++DY GG +D+ + I+ +G+ R ED LR++R RF + G ++ A IK Sbjct: 125 ELLDYFGGAHDIGKKLIRTVGNPEDRFREDALRMMRAVRFMSQLG-FVLEEKTKKAVIKD 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 ++ L +S ER E KLL + AI M G+ +E+ Sbjct: 184 RELLAHVSVERKTVEFEKLLLGTSSNEAIQTMVQTGLIQEL 224 >gi|270291287|ref|ZP_06197509.1| CCA-adding enzyme [Pediococcus acidilactici 7_4] gi|270280133|gb|EFA25969.1| CCA-adding enzyme [Pediococcus acidilactici 7_4] Length = 402 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 109/406 (26%), Positives = 183/406 (45%), Gaps = 34/406 (8%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N+L + + ++ VGG+VRD+L+ + D+DIAT+ P + +IF +T + T I Sbjct: 16 NVLQQIEEAGYEAYFVGGSVRDTLLGKPIHDVDIATSAYPAEIKQIFKRT----VDTGIE 71 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + ++ITT R++ R +V F R K D +RRDFTINA + Sbjct: 72 HGTVMVLTGEHSYEITTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALREDRT 131 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 VID GL DL+ I+ +GD R ED LR++R RF + + I+ L A Sbjct: 132 VIDVFDGLTDLKQHKIRAVGDPKARFHEDALRMMRGVRFASQL-DFVIEPQTLAAIKMNS 190 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAI-------VHMYNGGIFKEIFLDVQEISLDQLS 247 L +S ER E K++ NP + +H Y G+ + + +QE+ LS Sbjct: 191 SLLAKISVERTLVEFQKMMLGTNPNRGLADMVATRLHEYCPGLAGKGAV-LQELLAYPLS 249 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 Q+ Q++ +LL +++ + L K++ E+ + + + Sbjct: 250 QLENETQIW-----ALLAWMLQLRGAQINRFL---KQWKTSNELIRHVTATVRVLSMLDS 301 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP-LFPLT 366 + I + + G + +++ L ++ DT LQ+ K P +T Sbjct: 302 TGVDRI--ILFEAGANNVANAVRVAQILGHDAQGWLDTYQTLQI-------KSPKELAVT 352 Query: 367 GDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G D++ I PG ++G IL K IN E L RKL Sbjct: 353 GKDLIANQIITPGPQMGRILNSLKAMVINDQLPNQPEALFTAARKL 398 >gi|306831587|ref|ZP_07464745.1| tRNA adenylyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426372|gb|EFM29486.1| tRNA adenylyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 401 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 7/204 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF +T + Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIFHRT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R+ D+ D R + V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL DL + ++ +G+ R ED LRI+R FRF A + +I+ D A Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASL-DFDIEPDTFAAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMA 210 >gi|194467926|ref|ZP_03073912.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri 100-23] gi|194452779|gb|EDX41677.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri 100-23] Length = 403 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 116/217 (53%), Gaps = 7/217 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL + + ++ VGG VRD++++ + DIDIAT+ P + IF+ T + T I + Sbjct: 16 ILQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNHT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ ++ TT R++ R KV F R D RRDFTINAL + G+V Sbjct: 72 GTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALREDGEV 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GL DL+ IK +G+ + R ED LR++R RF + + ID+ L + Sbjct: 132 IDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKL-DFVIDTATLKGIKENAP 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 L+ ++ ERI E+ KLL +NP+ + G+++ Sbjct: 191 LLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQ 227 >gi|110802983|ref|YP_697371.1| polyA polymerase family protein [Clostridium perfringens SM101] gi|110683484|gb|ABG86854.1| polyA polymerase family protein [Clostridium perfringens SM101] Length = 422 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 112/405 (27%), Positives = 195/405 (48%), Gaps = 29/405 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRDSL+N QD DI T P+++ +F KT IPT I +GT+ ++ K ++ Sbjct: 23 IVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKHGTVTVLIDKTPYE 78 Query: 91 ITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 +TT R D + + + V F + + D RRDFTINA+ D G DL+N+ Sbjct: 79 VTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGFKDCFNGKEDLKNK 138 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK-KGLKILSSERIW 206 I+ +GD R ED LR+LR RF N + L A SI+ K +K +S ERI Sbjct: 139 LIRCVGDPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKNFKLIKNISMERIQ 195 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR- 265 SE K++ + P ++ + G + + + + L + + I+SL + Sbjct: 196 SEFTKIILSNEPDRGLMLLRKLGFSDFLVKEFKNLKLINCYDLYDDIHDTYGLINSLPKK 255 Query: 266 ---FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQKTLSIPEIKKLFYL 319 + + ++ S ++ K ++ ++++Y + + CN N ++S +K L Sbjct: 256 LHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENINSISCNMTRKKLKL 315 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWKKPLF----PLTGDD 369 + V + L L + L++ D C + +SDI+ K+P+F +TG+D Sbjct: 316 LINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILASKEPIFIKDLAITGND 375 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 ++ + PGK +G IL + + + ++EDL +L ++ + Sbjct: 376 LITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQFYS 420 >gi|260583471|ref|ZP_05851219.1| poly A polymerase [Granulicatella elegans ATCC 700633] gi|260158097|gb|EEW93165.1| poly A polymerase [Granulicatella elegans ATCC 700633] Length = 403 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 147/290 (50%), Gaps = 23/290 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD L++ + D+DIAT+ P V IFS T + I +GT+ +I K+ +++ Sbjct: 29 VGGSVRDMLLHKPISDVDIATSATPQEVKEIFSHT----VDVGIEHGTVMVIHHKEGYEV 84 Query: 92 TTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ D R+ KV F R + D RRDFTINAL ++ID+ G+ DL + Sbjct: 85 TTFRTEEGYEDFRHPDKVTFVRSLEEDLKRRDFTINALAIGIDDQLIDFFDGIGDLERQC 144 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +GDA R ED LR+ R RF G + I+ + A K L ++ ER+ E Sbjct: 145 IRCVGDAKERFNEDALRMFRAVRFVGQLGFQ-IEENTKNAISLLKMNLSKVAVERMKVEF 203 Query: 210 NKLLEAKNPLNAIVHMYNGGIFK---------EIFLDVQEISLDQLSQVIEAEQVF--EW 258 K++++ +A+ G+++ EI L + E + ++S V++A +F E Sbjct: 204 EKMIQSSYRKDALKLFVETGLYQACPLFDGKGEILLKLAEFPIKEMS-VLQAWILFVDEL 262 Query: 259 KIDSLLRFIVLISWQDK----KSILSMAKKFSLPREIRYFLISFFNCNFN 304 K+ +L SW+ + +L K + +E + ++C++ Sbjct: 263 KLSDKEVTHLLKSWKSSNEQIRDVLVGYKTYRARKEEEWNFFLAYDCSYE 312 >gi|291518259|emb|CBK73480.1| uncharacterized domain HDIG [Butyrivibrio fibrisolvens 16/4] Length = 442 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +D+ I+++L ++ VGG VRD ++ + D DI T+ LP+ V +F +T Sbjct: 5 ADVSKIINILESNGHEAYAVGGCVRDCILGKNPHDWDITTSALPETVKSLFDRT----FD 60 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R D DGR+ K V FT + D RRDFTINA+ + Sbjct: 61 TGIEHGTVTVLMHGVGYEVTTYRVDGKYEDGRHPKEVTFTASLEEDLKRRDFTINAMAYN 120 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D GG DL+ IK +G+ R ED LR+LR RF A G + I+ A Sbjct: 121 ESKGLVDLFGGEADLQAGIIKAVGNPTERFTEDALRMLRALRFSAQLGFE-IEPATYQAI 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + L+ +S+ERI E+ KL+ + +P I +Y G+ K F Sbjct: 180 KELAPTLERISAERIQVEMVKLVTSPHP-ERIRDVYETGLTKIFF 223 >gi|227543425|ref|ZP_03973474.1| tRNA adenylyltransferase [Lactobacillus reuteri CF48-3A] gi|300910092|ref|ZP_07127552.1| tRNA adenylyltransferase [Lactobacillus reuteri SD2112] gi|227186577|gb|EEI66648.1| tRNA adenylyltransferase [Lactobacillus reuteri CF48-3A] gi|300892740|gb|EFK86100.1| tRNA adenylyltransferase [Lactobacillus reuteri SD2112] Length = 403 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 7/217 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L + + ++ VGG VRD++++ + DIDIAT+ P + IF+ T + T I + Sbjct: 16 VLQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNHT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ ++ TT R++ R KV F R D RRDFTINAL + G+V Sbjct: 72 GTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALREDGEV 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GL DL+ IK +G+ + R ED LR++R RF + + ID+ L + Sbjct: 132 IDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKL-DFVIDTATLKGIKENAP 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 L+ ++ ERI E+ KLL +NP+ + G+++ Sbjct: 191 LLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQ 227 >gi|148543998|ref|YP_001271368.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri DSM 20016] gi|184153392|ref|YP_001841733.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri JCM 1112] gi|227364911|ref|ZP_03848956.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri MM2-3] gi|325682464|ref|ZP_08161981.1| poly A polymerase [Lactobacillus reuteri MM4-1A] gi|167006458|sp|A5VJK7|CCA_LACRD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|226702070|sp|B2G721|CCA_LACRJ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|148531032|gb|ABQ83031.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri DSM 20016] gi|183224736|dbj|BAG25253.1| polyA polymerase [Lactobacillus reuteri JCM 1112] gi|227070058|gb|EEI08436.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri MM2-3] gi|324978303|gb|EGC15253.1| poly A polymerase [Lactobacillus reuteri MM4-1A] Length = 403 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 7/217 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L + + ++ VGG VRD++++ + DIDIAT+ P + IF+ T + T I + Sbjct: 16 VLQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNHT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ ++ TT R++ R KV F R D RRDFTINAL + G+V Sbjct: 72 GTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALREDGEV 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GL DL+ IK +G+ + R ED LR++R RF + + ID+ L + Sbjct: 132 IDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKL-DFVIDTATLKGIKENAP 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 L+ ++ ERI E+ KLL +NP+ + G+++ Sbjct: 191 LLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQ 227 >gi|195941525|ref|ZP_03086907.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi 80a] Length = 410 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRAPKQVEYTKNLTKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|224534511|ref|ZP_03675087.1| polynucleotide adenylyltransferase [Borrelia spielmanii A14S] gi|224514188|gb|EEF84506.1| polynucleotide adenylyltransferase [Borrelia spielmanii A14S] Length = 410 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 114/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++++F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPCDFDFATNATPEEIIKLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYEKKRAPKQVEYTKNLIKDLKRRDFTINAIAMDIFNFNIIDCYDGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|238922936|ref|YP_002936449.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium rectale ATCC 33656] gi|238874608|gb|ACR74315.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium rectale ATCC 33656] Length = 446 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 104/189 (55%), Gaps = 7/189 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDSL+ QD DI T+ P +V IF T I T I +GT+ ++ +++ Sbjct: 26 VGGCVRDSLLGRVPQDWDITTSAKPAQVKAIFDHT----IDTGIQHGTVTVMLEHVGYEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT + K D RRDFTINA+ + + ++D G+ DL+ Sbjct: 82 TTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNHRAGLVDEFDGIADLKAHV 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G AH R ED LR+ R RF A G +I++ A + L +S+ERI E+ Sbjct: 142 IRCVGCAHDRFSEDALRMFRAVRFAAQLG-FDIEAQTKAAIKELAPALSKVSAERIQVEL 200 Query: 210 NKLLEAKNP 218 KLL + +P Sbjct: 201 VKLLTSDHP 209 >gi|111115537|ref|YP_710155.1| polynucleotide adenylyltransferase [Borrelia afzelii PKo] gi|216263443|ref|ZP_03435438.1| polynucleotide adenylyltransferase [Borrelia afzelii ACA-1] gi|110890811|gb|ABH01979.1| polynucleotide adenylyltransferase [Borrelia afzelii PKo] gi|215980287|gb|EEC21108.1| polynucleotide adenylyltransferase [Borrelia afzelii ACA-1] Length = 410 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 113/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++++F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPCDFDFATNATPEEIIKLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYEKKRAPKQVKYTKNLIKDLKRRDFTINAIAMDIFNFNIIDCYDGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E KLLE N I ++ FK F Sbjct: 201 EFQKLLEGVNIQKGIYYLKKVDFFKNFF 228 >gi|116514260|ref|YP_813166.1| tRNA CCA-pyrophosphorylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275008|sp|Q049Z4|CCA_LACDB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116093575|gb|ABJ58728.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 396 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T I Sbjct: 14 MPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R++ R KV F ++ D RRDFTINAL ++QG Sbjct: 70 LHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 130 EIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQLS-FSLEEKTRQAIINN 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + L +S ERI E KL K+ A G+ +E Sbjct: 189 HELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEE 228 >gi|153815226|ref|ZP_01967894.1| hypothetical protein RUMTOR_01460 [Ruminococcus torques ATCC 27756] gi|317502317|ref|ZP_07960486.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089921|ref|ZP_08338813.1| hypothetical protein HMPREF1025_02396 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847485|gb|EDK24403.1| hypothetical protein RUMTOR_01460 [Ruminococcus torques ATCC 27756] gi|316896273|gb|EFV18375.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403153|gb|EGG82714.1| hypothetical protein HMPREF1025_02396 [Lachnospiraceae bacterium 3_1_46FAA] Length = 449 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 8/206 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRDS++ +D DI T+ P+ V ++F +T + T I +GT+ ++ + +++ Sbjct: 26 VGGCVRDSILARRPKDWDITTSARPEEVKKLFRRT----VDTGIEHGTVTVLLGRDGYEV 81 Query: 92 TTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V+FT + D RRDFTINA+ + + +++D GG+ DL + Sbjct: 82 TTYRIDGAYEDSRHPKEVLFTNRLEEDLRRRDFTINAMAYNDEVRLVDVFGGMQDLNHHL 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +GD R ED LRILR RF A I+ + A + L+ +S+ERI +E+ Sbjct: 142 IRCVGDPRERFSEDALRILRAVRFSAQLNFP-IEEETAEAVRELAPTLENISAERIQAEL 200 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIF 235 KLL + +P I Y GI + I Sbjct: 201 VKLLVSAHP-ERIQDAYELGITRIIL 225 >gi|325978493|ref|YP_004288209.1| tRNA CCA-pyrophosphorylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178421|emb|CBZ48465.1| tRNA CCA-pyrophosphorylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 401 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 7/205 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF +T + Sbjct: 11 QEALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKGIFHRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ ++ITT R+ D+ D R + V F R + D RRDFT+NA D Sbjct: 67 IGIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G +ID GL DL + ++ +G+ R ED LRI+R FRF A + +I+ D A Sbjct: 127 ETGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASL-DFDIEPDTFAAM 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 186 AAHAPLLEKISVERSFIEFDKLLMA 210 >gi|288905503|ref|YP_003430725.1| tRNA nucleotidyltransferase [Streptococcus gallolyticus UCN34] gi|288732229|emb|CBI13794.1| tRNA nucleotidyltransferase [Streptococcus gallolyticus UCN34] Length = 401 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 7/204 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF +T + Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKGIFHRT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R+ D+ D R + V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL DL + ++ +G+ R ED LRI+R FRF A + +I+ D A Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASL-DFDIEPDTFAAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMA 210 >gi|15595051|ref|NP_212840.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi B31] gi|2688624|gb|AAC67039.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi B31] Length = 410 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 113/208 (54%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRAPKQVEYTKNLLKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R+ ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNPNKRLEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|169343380|ref|ZP_02864384.1| polyA polymerase family protein [Clostridium perfringens C str. JGS1495] gi|169298466|gb|EDS80552.1| polyA polymerase family protein [Clostridium perfringens C str. JGS1495] Length = 422 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 116/419 (27%), Positives = 200/419 (47%), Gaps = 31/419 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT I + Sbjct: 10 ILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKH 65 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K +++TT R D + + + V F + + D RRDFTINA+ Sbjct: 66 GTVTVLIDKNSYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGF 125 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK 194 D G DL+N+ I+ +G+ R ED LR+LR RF N + L A SI+ Sbjct: 126 KDCFNGKEDLKNKLIRCVGNPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKN 182 Query: 195 -KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K +K +S ERI SE K++ + +P ++ + G + + + + L + + Sbjct: 183 FKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYDDI 242 Query: 254 QVFEWKIDSL-----LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQ 305 I+SL +R L ++ S ++ K ++ ++++Y + + CN N Sbjct: 243 HDTYGLINSLPKKLHVRLAGLF-YKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENI 301 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWK 359 +S +K L + V + L L + L++ D C + +SDI+ K Sbjct: 302 NNISCNMTRKKLKLLINAVGTENIFNLLDLQKSYLSYMDEYDTECIDILKNRVSDILASK 361 Query: 360 KPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 +P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ + Sbjct: 362 EPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQFYS 420 >gi|222151352|ref|YP_002560508.1| hypothetical protein MCCL_1105 [Macrococcus caseolyticus JCSC5402] gi|222120477|dbj|BAH17812.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 410 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 16/209 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K IVGGA+R+ LM + V DIDI T LP++++RIF +T IP I +GT+ ++ Sbjct: 36 KGYIVGGAIRNLLMGIPVNDIDITTDCLPEQMIRIFERT----IPVGIEHGTVIVLIEDF 91 Query: 88 YFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 F++TT R DG Y V F K D RRDFT+NA+ AD+ ++ DY G Sbjct: 92 PFEVTTFRE----DGEYKDHRRPDSVNFVTSLKVDLERRDFTVNAIAADKY-QLYDYFDG 146 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + +R I+ +GD R ED LRI+R RF + + I+ + L ++ + L+ +S Sbjct: 147 KKHIEDRLIQAVGDPALRFEEDALRIIRALRFMSVL-DFQIEQETLENMKQSAQYLEAVS 205 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGI 230 ERI E+ KLL N ++ + GI Sbjct: 206 IERIIIELCKLLSGVNVTRSLKLFFELGI 234 >gi|308061970|gb|ADO03858.1| poly(A) polymerase [Helicobacter pylori Cuz20] Length = 388 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 108/208 (51%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 VID G N + N+ I+ +G+A R ED LRILR RF A G K I A Sbjct: 125 SPTKGVIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NK L KN Sbjct: 184 IFACKDLLKHLSKERLQSELNKFLMGKN 211 >gi|94967528|ref|YP_589576.1| metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] gi|94549578|gb|ABF39502.1| metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 17/242 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 I I+ L ++ +VGG VRD L+ D D+AT +PD+VM+IF KT ++ V Sbjct: 8 IEIVKTLRGHGHQAYLVGGCVRDLLLGRDPADYDVATDAIPDQVMKIFPKTWAVGAQFGV 67 Query: 71 I-------PTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYA-KVVFTRDWKADSLRRD 121 + P T ++ T RSD + +DGR+ +V F++D + D RRD Sbjct: 68 VLVPVPDEPECDPEATHPQSHHHGCIEVATFRSDGVYSDGRHPDEVRFSQDPREDVQRRD 127 Query: 122 FTINALYAD--QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 FTIN + D +V+D+VGG DL + I+ IGD R ED LR+LR RF A + E Sbjct: 128 FTINGMLLDPLNHDEVLDFVGGRADLAAKIIRTIGDPRQRFEEDKLRMLRAVRFAARF-E 186 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I + + + + ++S ER+ E+ K+L + A + G+ ++ ++ Sbjct: 187 YEIAPETMAVIQQLSPQISVVSHERVRDELTKMLTEGHARRAFELLDESGLLIQVLPEIA 246 Query: 240 EI 241 ++ Sbjct: 247 KM 248 >gi|89897899|ref|YP_515009.1| poly (A) polymerase [Chlamydophila felis Fe/C-56] gi|89331271|dbj|BAE80864.1| poly (A) polymerase [Chlamydophila felis Fe/C-56] Length = 410 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 9/228 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL L ++ VGG VRD LM +++IDIAT P V IF T + ++ Sbjct: 12 ILQKLRNAGYQAYFVGGCVRDMLMGKPIEEIDIATNAPPVIVSTIFPDT----LALGAAF 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 G I + + F++ T RSD DGR+ + V K D+LRRDFTIN +Y D + K+ Sbjct: 68 GIIVVKEDSRLFEVATFRSDENYEDGRHPERVVFSSMKEDALRRDFTINGMYYDPFEEKI 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D V G D+ R ++ IG R ED LRILR RF + G +D A ++ Sbjct: 128 FDLVEGRRDIEKRVVRAIGHPKLRFSEDKLRILRAIRFSSSLG-FTLDPATERAIVREAP 186 Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 L +S ERIW E+ K+L+ + P A+ + I IF +++++ Sbjct: 187 TLVNSVSPERIWQELRKMLKQR-PYEALYLLIKLKIITVIFPELRDVP 233 >gi|163939453|ref|YP_001644337.1| tRNA CCA-pyrophosphorylase [Bacillus weihenstephanensis KBAB4] gi|226702039|sp|A9VME7|CCA_BACWK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|163861650|gb|ABY42709.1| Polynucleotide adenylyltransferase region [Bacillus weihenstephanensis KBAB4] Length = 397 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 128/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIEMLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G +R + I +GDA R ED LR++R RF + + G IK K Sbjct: 125 MVDLFAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRF--------VSTLGFSLEIKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL +N + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVNGLQELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|171778267|ref|ZP_02919473.1| hypothetical protein STRINF_00315 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282967|gb|EDT48391.1| hypothetical protein STRINF_00315 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 401 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 7/204 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF +T + Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIFHRT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R+ D+ D R + V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL DL+ + ++ +G+ R ED LRI+R FRF A + +I+ + A Sbjct: 128 TGLIIDKFNGLADLKAKLLRAVGNPAERFNEDALRIMRGFRFSASL-DFDIEPETFAAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMA 210 >gi|331701410|ref|YP_004398369.1| CCA-adding enzyme [Lactobacillus buchneri NRRL B-30929] gi|329128753|gb|AEB73306.1| CCA-adding enzyme [Lactobacillus buchneri NRRL B-30929] Length = 403 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 9/208 (4%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K FH++ + IL + ++ VGG+VRD+++ + D+DIAT+ P V +F +T Sbjct: 12 KEFHEA--LPILQKIESAGYEAYFVGGSVRDTILKRPIHDVDIATSAYPSEVKALFKRT- 68 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTIN 125 + T I +GT+ I+ +++TT R++ R V F R K D RRDFTIN Sbjct: 69 ---VDTGIEHGTVMILDHGTGYEVTTFRTESGYQDYRRPDHVTFVRSLKEDLKRRDFTIN 125 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 AL + G+V D GGL+D+R I+ +GD + R ED LR++R RF + K I+ Sbjct: 126 ALALAENGQVTDLFGGLSDMRKHIIRAVGDPNERFNEDALRMMRAVRFASQLDFK-IEDA 184 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLL 213 L + + L ++ ER +E K++ Sbjct: 185 TLAGIARHSQLLAKIAVERSHTEFVKMM 212 >gi|172057791|ref|YP_001814251.1| polynucleotide adenylyltransferase region [Exiguobacterium sibiricum 255-15] gi|171990312|gb|ACB61234.1| Polynucleotide adenylyltransferase region [Exiguobacterium sibiricum 255-15] Length = 379 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 8/216 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ + ++ IVGGAVRD L+ D D+AT++LP+ VM +F VIPT + Sbjct: 7 QIIQTIEAAGGEAYIVGGAVRDMLLKREPGDYDLATSLLPEAVMHLFP----VVIPTGLD 62 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ F++TT RS+ +D R +V + D RRDFTINA+ G Sbjct: 63 HGTVTVVLDHVPFEVTTFRSESTYSDRRRPDEVTLGVSLEEDLTRRDFTINAMALKPTG- 121 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG DL + ++ +G A R ED LR++R FRF + E +D + A K Sbjct: 122 LVDLFGGQADLATKVVRTVGRAEDRFDEDALRMIRAFRFMSQL-EFTLDPETERAIENKK 180 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + L ++ ERI E KLL A+ M GI Sbjct: 181 QHLSSVAVERIAIEFEKLLLGPGRKAALAAMRRTGI 216 >gi|262067034|ref|ZP_06026646.1| poly(A) polymerase [Fusobacterium periodonticum ATCC 33693] gi|291379243|gb|EFE86761.1| poly(A) polymerase [Fusobacterium periodonticum ATCC 33693] Length = 451 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 13/225 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL LN+ K IVGGA+RD L++L +DID T + + + +FS+ Y T Sbjct: 14 IEILRKLNEY-GKGYIVGGAIRDILLDLEPKDIDFTTNLPYETLKDLFSE--YNPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVV-------FTRDWKADSLRRDFTINALY 128 ++G ++I ++I R D + K+V F D K D RRDF+INA+ Sbjct: 71 AFGVLRIRVNDTEYEIAKFREDNYEEKDGLKIVPEENKVDFVEDIKEDLTRRDFSINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G S+ + Sbjct: 131 YNEVDGIVDLYNGQKDIENKIINFVGNAEERIIEDPLRILRAFRFMSRLGFSL--SENTI 188 Query: 189 ASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +IK +K L + ERI E +KLL +N N + M + + + Sbjct: 189 EAIKKQKNLLTSIPEERITMEFSKLLLGENVKNTLTAMKDTEVLE 233 >gi|322389621|ref|ZP_08063169.1| polyA polymerase family protein [Streptococcus parasanguinis ATCC 903] gi|321143620|gb|EFX39050.1| polyA polymerase family protein [Streptococcus parasanguinis ATCC 903] Length = 403 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 15/206 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF +T + Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R+ D+ D R + V F R + D RRDFT+NA ++ Sbjct: 68 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGL 187 +G+++D GL DL N+ ++ +G + R ED LRI+R FRF A G E D+ Sbjct: 128 KGEIVDLFHGLEDLENKVLRAVGLPNERFNEDALRIMRGFRFQASLGFELEEATFDAMKE 187 Query: 188 VASIKAKKGLKILSSERIWSEINKLL 213 A + L+ +S ER + E +KLL Sbjct: 188 CAPL-----LEKISVERTFIEFDKLL 208 >gi|281356278|ref|ZP_06242770.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Victivallis vadensis ATCC BAA-548] gi|281316970|gb|EFB00992.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Victivallis vadensis ATCC BAA-548] Length = 447 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 130/245 (53%), Gaps = 16/245 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD L+ D D+ T+ P+ + ++F+ R S+G I + Sbjct: 34 LVGGSVRDLLLGKVPSDFDLVTSAKPEELAQLFADFRA----VGASFGVSLIGVGGVSLE 89 Query: 91 ITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 + T R + DGR+ ++V +T D + D RRDFTINAL+ D +G+V D VGG++DL Sbjct: 90 VATAREERNYLDGRHPELVRYTADLECDVQRRDFTINALWYDPAEGEVCDCVGGIDDLER 149 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERIW 206 ++ +GDA R EDYLR+LR RF A E ++ + ++ K L+ ERI Sbjct: 150 GVVRTVGDAGRRFNEDYLRMLRAVRFAARLRFELFPETRRAIQALAPKAA--GLAGERIN 207 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 +E+ ++L +P A+ +++ G+ + +V +LD + Q E F + D L Sbjct: 208 AEVTRMLTGPDPARAVRMLFDTGLLAAVLPEVA--ALDGVEQPPE----FHPEGDVLTHT 261 Query: 267 IVLIS 271 ++++S Sbjct: 262 LLMLS 266 >gi|126700083|ref|YP_001088980.1| putative poly(A) polymerase [Clostridium difficile 630] gi|115251520|emb|CAJ69353.1| putative tRNA-nucleotidyltransferase/Poly(A) polymerase family member [Clostridium difficile] Length = 448 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 9/199 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F KT IPT I + Sbjct: 16 IIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQH 71 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ + + + Sbjct: 72 GTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSKTGL 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G D++N+ I+ +G+ R ED LR+LR RF A K ++G SI K Sbjct: 132 VDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNFK--IAEGTKQSIHKKA 189 Query: 196 GL-KILSSERIWSEINKLL 213 L K +S ERI +E NK+L Sbjct: 190 DLIKNVSIERIQTEFNKIL 208 >gi|308184427|ref|YP_003928560.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori SJM180] gi|308060347|gb|ADO02243.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori SJM180] Length = 402 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 3/189 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD LM ++ +D D+ + L + + K ++V+ T I +GTI + + ++ Sbjct: 24 LVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHGTITALKNHQSYE 83 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G N + N+ Sbjct: 84 ITTFRIEKGHIKHRKPKELVFSAHLTDDLKRRDFSMNAIAYSPTKGLIDPFKGQNAIENQ 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 TI+ +G A R ED LRILR RF A G K I A K LK LS ER+ SE Sbjct: 144 TIECVGGARLRFFEDALRILRALRFSATLGFK-IAPSTKEAVFACKDLLKHLSKERLQSE 202 Query: 209 INKLLEAKN 217 +NKLL KN Sbjct: 203 LNKLLMGKN 211 >gi|125623783|ref|YP_001032266.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris MG1363] gi|166233862|sp|A2RJT1|CCA_LACLM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|124492591|emb|CAL97536.1| poly(A) polymerase [Lactococcus lactis subsp. cremoris MG1363] gi|300070552|gb|ADJ59952.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris NZ9000] Length = 402 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 184/380 (48%), Gaps = 24/380 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK- 86 ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I I +GT+ ++ K Sbjct: 26 EAYFVGGSVRDVLLGREIHDVDIATSAYPEEIKDIFPYT----IDVGIEHGTVLVLAGKS 81 Query: 87 --KYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++++ITT R++ TD R V F RD + D RRDFT+NA D +G++ID GL Sbjct: 82 EAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFACDFEGQIIDLFDGL 141 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ R + +G A R ED LRI+R R FA + I+ A + L+ +S Sbjct: 142 TDLKERRLTAVGSALERFNEDALRIMRAMR-FASTLDFKIEEKTFSAMRERSHLLEKISV 200 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ERI+ E++KLL N + + +K D Q+++L ++ + + F+ + Sbjct: 201 ERIFIELDKLLLGSEWRNGLTLLIESEAWK-YLPDFQDLALKKVLTELSVDFHFKNSEQA 259 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + S D K+ L +K+ + E ++ + L ++ L++ + Sbjct: 260 WAALLTRFSNIDVKAFL---RKWKVSNEFSKYVADLVSAY----ELENWDLVSLYHFGLE 312 Query: 323 K-VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 K +++ +LKI ++ + FI L IH K + D + ++ + PG ++ Sbjct: 313 KALLVDELKIAFG---RDIDRERAVFINDQLQ--IHDKSEIVIAGKDLMDEFSLKPGPEL 367 Query: 382 GNILVHCKQEWINSSFQLSQ 401 G IL +++ + + + Q Sbjct: 368 GKILKTIEEKIVKNELKNEQ 387 >gi|150016764|ref|YP_001309018.1| tRNA adenylyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149903229|gb|ABR34062.1| tRNA adenylyltransferase [Clostridium beijerinckii NCIMB 8052] Length = 443 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 119/410 (29%), Positives = 178/410 (43%), Gaps = 72/410 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD ++ +D DI T P V+ +F KVI T + +GT+ ++ K+ ++ Sbjct: 27 MVGGCVRDCILGKEPKDWDITTNAKPLEVVELFD----KVILTGLKHGTVTVMLNKESYE 82 Query: 91 ITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT RSD D R+ K V F K D RRDFTIN++ + ++DY G+ DL + Sbjct: 83 ITTYRSDGEYEDNRHPKEVKFVSSLKEDLARRDFTINSMAYNNISGLVDYFNGIEDLDEK 142 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +G+ R ED LR+LR RF A + ID L + + K ++ +S ERI E Sbjct: 143 VIRTVGEPRKRFGEDALRMLRAIRFSAQL-DFTIDRLTLNSIKELKDNIRNISKERIREE 201 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLDQLSQVIEAEQVFEW 258 NK+L NP I + GI + I + +I S D + I A + E Sbjct: 202 FNKIL-LNNP-RKIEMLRECGILEYIVPGISKIYNFNKNNSCHSHDLYNHAIIATETVES 259 Query: 259 KIDSLLRFI---------VLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTL 308 +I L + + D S +K+ S + EI +L + N N+ TL Sbjct: 260 QIYLKLSMLFHDFGKACTIRTDENDNLHCSSYSKESSRIANEILKYL-KYDNNTINKVTL 318 Query: 309 SIP----------EIKKLFY-----LYGDKVMIAKLKIFLALHYNNLTH----------- 342 I IKKL L+ D + I + I N+ H Sbjct: 319 LIQYHDYRMDNKVSIKKLLREIGIDLFKDLIKIKRADILAQESKNSKKHLINLDGVENIL 378 Query: 343 -----QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 +D CF L+ L + G D++ G GK++G IL H Sbjct: 379 NKIIDKDECFTLKNLK-----------INGGDLLSLGFNKGKEIGEILNH 417 >gi|218132748|ref|ZP_03461552.1| hypothetical protein BACPEC_00609 [Bacteroides pectinophilus ATCC 43243] gi|217992474|gb|EEC58477.1| hypothetical protein BACPEC_00609 [Bacteroides pectinophilus ATCC 43243] Length = 424 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 7/208 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +D ILS L ++ +VGG VRDSL+ + D DI T+ LP +V ++F +T + Sbjct: 18 TDAQEILSTLEADGRQAYVVGGCVRDSLIGRTPGDWDITTSALPMQVKQLFRRT----VD 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R D DGR+ V F+ + + D RRDFTINA+ + Sbjct: 74 TGIKHGTVTVMMGDTGYEVTTYRIDGNYADGRHPDSVEFSANLRDDLKRRDFTINAMAYN 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++D G+ DL+ ++ +GDA R ED LR++R RF A G ID D A Sbjct: 134 NSDGLVDEFNGIGDLQAGIVRCVGDARERFTEDALRMMRAIRFSAQLGFI-IDEDTYSAI 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNP 218 + +S ERI E+ K+L + +P Sbjct: 193 GAMADTISKVSMERIHDELGKILMSDHP 220 >gi|210134846|ref|YP_002301285.1| poly(A) polymerase [Helicobacter pylori P12] gi|210132814|gb|ACJ07805.1| poly(A) polymerase [Helicobacter pylori P12] Length = 402 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDVYEKSPYELYLVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKCHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N +RN+ I+ +G A R ED LRILR RF A G K I A Sbjct: 125 SPTKGLIDPFKGQNAIRNQVIECVGGARLRFFEDALRILRVLRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|161507464|ref|YP_001577418.1| tRNA CCA-pyrophosphorylase [Lactobacillus helveticus DPC 4571] gi|172048281|sp|A8YV39|CCA_LACH4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|160348453|gb|ABX27127.1| tRNA nucleotidyltransferase [Lactobacillus helveticus DPC 4571] gi|323466652|gb|ADX70339.1| tRNA nucleotidyltransferase [Lactobacillus helveticus H10] Length = 399 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 116/417 (27%), Positives = 187/417 (44%), Gaps = 54/417 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T I Sbjct: 15 MPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTGI 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G Sbjct: 71 RHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLHG 130 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A Sbjct: 131 QIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKDN 189 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD--------Q 245 + LK +S ERI E K+ + A +IFLD Q +S D + Sbjct: 190 HELLKKISVERIREEFVKMGIGPHSRQAF----------QIFLDTQ-LSEDVPDFAGKKE 238 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE-IRYFLISFFNCNFN 304 L Q+ Q SL I+++ LP E I F+ + N N Sbjct: 239 LLQIYPQLQFSPTLETSLWSLIIIL--------------LKLPDEDISKFMRDWKNS--N 282 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL------QVLSD---I 355 T + I K F L D ++F A + D IL + L D Sbjct: 283 AMTEQVERIIKFFDLISDHTP-NDYELFQAGERTIINTIDVAHILGQPVASEALVDRYLA 341 Query: 356 IHWKKPL-FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + KKP + G ++K+G+ PG ++G+ L ++ ++S + S + + L L Sbjct: 342 LPIKKPAELAIDGRFLIKHGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398 >gi|182625370|ref|ZP_02953143.1| polyA polymerase family protein [Clostridium perfringens D str. JGS1721] gi|177909367|gb|EDT71819.1| polyA polymerase family protein [Clostridium perfringens D str. JGS1721] Length = 424 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 114/418 (27%), Positives = 200/418 (47%), Gaps = 29/418 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT I + Sbjct: 12 ILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPTGIKH 67 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K +++TT R D + + + V F + + D RRDFTINA+ Sbjct: 68 GTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSPYLGF 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-SIKAK 194 D G DL+N+ I+ +G+ R ED LR+LR RF N + L A SI+ Sbjct: 128 KDCFNGKEDLKNKLIRCVGNPDKRFSEDALRMLRAIRFSCQL---NFKIEKLTAESIRKN 184 Query: 195 -KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K +K +S ERI SE K++ + +P ++ + G + + + + L + + Sbjct: 185 FKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYDDI 244 Query: 254 QVFEWKIDSLLR----FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNF--NQK 306 I+SL + + + ++ S ++ K ++ ++++Y + + CN N Sbjct: 245 HDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVENIN 304 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD----TC--FILQVLSDIIHWKK 360 +S +K L + V + L L + L++ D C + +SDI+ K+ Sbjct: 305 NISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDILASKE 364 Query: 361 PLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ + Sbjct: 365 PIFIKDLAITGNDLITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQFYS 422 >gi|152975060|ref|YP_001374577.1| tRNA CCA-pyrophosphorylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189081870|sp|A7GN74|CCA_BACCN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|152023812|gb|ABS21582.1| Polynucleotide adenylyltransferase region [Bacillus cytotoxicus NVH 391-98] Length = 397 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 100/394 (25%), Positives = 194/394 (49%), Gaps = 27/394 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM++F K +P + + Sbjct: 10 IIETLKEHGHEAYFVGGSVRDFIIDRPIGDIDIATSALPEEVMKLFPKH----VPVGLEH 65 Query: 78 GTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT R SD R + V F R + D RRDFT+NA+ ++ G++ Sbjct: 66 GTVIVLQDGEPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEDGEI 125 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG ++ R I +G+A R ED LR++R RF + G +++ A + Sbjct: 126 IDLFGGQEAIQKREIVTVGNAAERFQEDALRMMRGIRFVSTLG-FSLEEKTECAIKRYGH 184 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE-Q 254 L+ ++ ERI E KLL + + + +F + L ++S +++ + E + Sbjct: 185 LLEHIAIERITVEFEKLLTGPYCVKGLQKLVETKLF--MHLPYLQMSEEKILKAAEYNWE 242 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP--REIRYFLISFFNCNFNQKTLSIPE 312 FE +I++ F+ I ++ S+ KFS +EI L++ +T E Sbjct: 243 SFETEIEAWAFFLSCIG-EEHPSVFLRQWKFSNKKIKEIVAVLLAI-------RTRKTKE 294 Query: 313 IKKLF-YLYGDKVMIAKLKIFLAL--HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 +F Y G ++ + +++ + YN T + + ++ + K+ ++G+D Sbjct: 295 WDAVFLYQTGVQIALMAERVYQVMIEEYNMSTVSE---VQRLFDSLPIQKRQEMNVSGND 351 Query: 370 VVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQE 402 ++ + PG V +L ++E + + +E Sbjct: 352 LLSWTDKTPGPWVAEVLQKIEEEILQKRLENEKE 385 >gi|226320457|ref|ZP_03796023.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 29805] gi|226234099|gb|EEH32814.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 29805] Length = 410 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|15611650|ref|NP_223301.1| polynucleotide adenylyltransferase [Helicobacter pylori J99] gi|4155144|gb|AAD06174.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99] Length = 402 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 3/189 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG +RD LM ++ +D D+ + L + + K ++V+ T I +GTI + + ++ Sbjct: 24 LVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHDFRVLETGIKHGTITALKNHQSYE 83 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G N + N+ Sbjct: 84 ITTFRMEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAYSPTKGLIDPFKGQNAIENQ 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 TI+ +G+A R ED LRILR RF A G K I + A K LK LS ER+ SE Sbjct: 144 TIECVGEARLRFFEDALRILRALRFSATLGFK-IAASTKRAVFACKDLLKHLSKERLQSE 202 Query: 209 INKLLEAKN 217 +NKLL KN Sbjct: 203 LNKLLMGKN 211 >gi|167749856|ref|ZP_02421983.1| hypothetical protein EUBSIR_00824 [Eubacterium siraeum DSM 15702] gi|167657168|gb|EDS01298.1| hypothetical protein EUBSIR_00824 [Eubacterium siraeum DSM 15702] Length = 438 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 110/204 (53%), Gaps = 13/204 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL LN ++ VGG VRD L+ +D D+ T+ LP++++ +F Y+++ + + Sbjct: 10 ILQKLNNNGYEAYCVGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFDG--YRLLTVGLKH 67 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINALYADQ 131 GT+ +I K +ITT R DG Y +KV FT + D RRD TINA+ + Sbjct: 68 GTVTVIINKHPVEITTYR----IDGEYIDHRHPSKVGFTPNLADDLARRDLTINAIAYND 123 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + ++D GG DL+N I+ +GD R ED LRILR RF + YG +ID A Sbjct: 124 KVGMVDLYGGAEDLKNGIIRCVGDPMKRFDEDGLRILRALRFASRYG-FSIDKATSDAIH 182 Query: 192 KAKKGLKILSSERIWSEINKLLEA 215 + K L +S+ERI SE+ +L Sbjct: 183 RQKFLLSFISAERINSELCGILTG 206 >gi|328467369|gb|EGF38447.1| tRNA CCA-pyrophosphorylase [Lactobacillus helveticus MTCC 5463] Length = 399 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 114/418 (27%), Positives = 188/418 (44%), Gaps = 56/418 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T I Sbjct: 15 MPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTGI 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G Sbjct: 71 RHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLYG 130 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A Sbjct: 131 QIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKDN 189 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----------EISL 243 + LK +S ERI E K+ + A +IFLD Q + L Sbjct: 190 HELLKKISVERIREEFVKMGIGPHSRQAF----------QIFLDTQLSEDVPDFAGKKEL 239 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 Q+ ++ E + SL+ I+L+ DK +I F+ + N Sbjct: 240 LQIYPQLQFSPTLETSLWSLI--IILLKLPDK--------------DISKFMRDWKNS-- 281 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL------QVLSD--- 354 N T + I K F L D ++F A + D IL + L D Sbjct: 282 NAMTEQVERIIKFFDLISDHTP-NDYELFQAGERTIINTIDVAHILGQPVASEALVDRYL 340 Query: 355 IIHWKKPL-FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + KKP + G ++K+G+ PG ++G+ L ++ ++S + S + + L L Sbjct: 341 ALPIKKPAELAIDGRFLIKHGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398 >gi|76798774|ref|ZP_00780990.1| polynucleotide adenylyltransferase [Streptococcus agalactiae 18RS21] gi|76585881|gb|EAO62423.1| polynucleotide adenylyltransferase [Streptococcus agalactiae 18RS21] Length = 402 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 190/404 (47%), Gaps = 24/404 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + I Sbjct: 14 LPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++ G Sbjct: 70 EHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 130 EVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKKH 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 189 ASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLDK 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + +FE + I+ + + K+ L K + ++ ++ + Q L+ Sbjct: 249 DFLFETSEQAWASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIR-EQMGLT--- 304 Query: 313 IKKLFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 K+ Y YG ++ I L + + + D+ IH + + G Sbjct: 305 -KEHLYRYGKTIIKQAEGIRKARGLMVDFEKIEQLDSEL-------AIHDRHEIVVNGGT 356 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + K GI PG ++G+I+ + + +E + H +++ + Sbjct: 357 LIKKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFIKQYL 400 >gi|225551849|ref|ZP_03772792.1| polynucleotide adenylyltransferase [Borrelia sp. SV1] gi|225371644|gb|EEH01071.1| polynucleotide adenylyltransferase [Borrelia sp. SV1] Length = 410 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRAPKQVEYTKNLIQDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|221217911|ref|ZP_03589378.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 72a] gi|224532377|ref|ZP_03673007.1| polynucleotide adenylyltransferase [Borrelia burgdorferi WI91-23] gi|224533346|ref|ZP_03673940.1| polynucleotide adenylyltransferase [Borrelia burgdorferi CA-11.2a] gi|225550052|ref|ZP_03771013.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 118a] gi|221192217|gb|EEE18437.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 72a] gi|224512684|gb|EEF83055.1| polynucleotide adenylyltransferase [Borrelia burgdorferi WI91-23] gi|224513511|gb|EEF83868.1| polynucleotide adenylyltransferase [Borrelia burgdorferi CA-11.2a] gi|225369511|gb|EEG98963.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 118a] gi|312147829|gb|ADQ30488.1| polynucleotide adenylyltransferase [Borrelia burgdorferi JD1] Length = 410 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 8/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II KK F+ Sbjct: 26 LVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFNKKIFE 81 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 ITT R + + A +V +T++ D RRDFTINA+ D +ID G DL Sbjct: 82 ITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGKKDLNK 141 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S ERI + Sbjct: 142 KIIRCIGNPNKRFEEDALRILRAARFSSTLNF-NIEKNTLISMKYKKENILMISKERIKN 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +KLLE N I ++ FK F Sbjct: 201 EFHKLLEGINIQKGIYYLKKVDFFKNFF 228 >gi|86157905|ref|YP_464690.1| polynucleotide adenylyltransferase protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774416|gb|ABC81253.1| Polynucleotide adenylyltransferase region [Anaeromyxobacter dehalogenans 2CP-C] Length = 436 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 114/212 (53%), Gaps = 10/212 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++++L L +S +VGGAVRD L++ + D D+AT P +VM +F + VIP Sbjct: 16 ILDVLRRLAAAGHRSWLVGGAVRDVLLHRPRAATDFDVATPATPQQVMALFRR----VIP 71 Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++TT R D + R A V F + +AD RRDFT+NA+ D Sbjct: 72 TGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPATVTFLAELEADLARRDFTMNAMAYD 131 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 Q D G D+ R I+ +GD R ED LR +R RF A G + +D A Sbjct: 132 PLQADFRDPFDGRVDMSRRRIRAVGDPAARFGEDGLRAMRAVRFAAQLGYR-LDPATRAA 190 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 A + ++ +S ER+ E+++L+ A +P A Sbjct: 191 IPGALEVVRKVSVERVAEELSRLVLASHPGPA 222 >gi|194016787|ref|ZP_03055400.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus pumilus ATCC 7061] gi|194011393|gb|EDW20962.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus pumilus ATCC 7061] Length = 400 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 7/221 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL L++ ++ VGGAVRD L+ + DIDIAT PD V +F KT + Sbjct: 9 IPILHTLHEHGHQAYFVGGAVRDVLLGREIGDIDIATDATPDTVESLFEKT----VDVGK 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++TT R++ + R +V F K D LRRD TINA+ D G Sbjct: 65 EHGTVIVLHDGVSYEVTTFRTESEYEDFRRPKEVAFITSLKEDLLRRDLTINAMAMDIDG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID+V G D+ + I+ +GD R ED LR++R RF + G + + A K Sbjct: 125 EIIDHVEGKKDIERKRIQTVGDPACRFQEDALRMMRAVRFLSQLG-FELAPETAEAMEKD 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K+ L +S ER E+ KLL+ + AI + + +++E+ Sbjct: 184 KRLLANISVERKKIEMEKLLKGRYCERAIKVLISTKLYEEL 224 >gi|308182871|ref|YP_003926998.1| poly(A) polymerase [Helicobacter pylori PeCan4] gi|308065056|gb|ADO06948.1| poly(A) polymerase [Helicobacter pylori PeCan4] Length = 388 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHDFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSSRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LR+LR RF A G K I S A Sbjct: 125 SPTKGLIDPFKGQNAIENQMIECVGEARLRFFEDALRVLRALRFSATLGFK-IASSTKKA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 IFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|76787734|ref|YP_329982.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae A909] gi|76562791|gb|ABA45375.1| polyA polymerase [Streptococcus agalactiae A909] Length = 397 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 190/404 (47%), Gaps = 24/404 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + I Sbjct: 9 LPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++ G Sbjct: 65 EHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNEDG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 125 EVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKKH 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 184 ASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLDK 243 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + +FE + I+ + + K+ L K + ++ ++ + Q L+ Sbjct: 244 DFLFETSEQAWASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIR-EQMGLT--- 299 Query: 313 IKKLFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 K+ Y YG ++ I L + + + D+ IH + + G Sbjct: 300 -KEHLYRYGKTIIKQAEGIRKARGLMVDFEKIEQLDSEL-------AIHDRHEIVVNGGT 351 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + K GI PG ++G+I+ + + +E + H +++ + Sbjct: 352 LIKKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 395 >gi|261839532|gb|ACX99297.1| tRNA CCA-pyrophosphorylase [Helicobacter pylori 52] Length = 402 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF A+ G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSANLGFKIVLSTK-EA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 IFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|291531026|emb|CBK96611.1| uncharacterized domain HDIG [Eubacterium siraeum 70/3] Length = 438 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 14/199 (7%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 L N G + C VGG VRD L+ +D D+ T+ LP++++ +F Y+++ + +GT+ Sbjct: 14 LNNNGYEAYC-VGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFDG--YRLLTVGLKHGTV 70 Query: 81 KIICRKKYFDITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINALYADQQGK 134 +I K +ITT R DG Y +KV FT + D RRD TINA+ + + Sbjct: 71 TVIINKHPVEITTYR----IDGEYIDHRHPSKVGFTPNLADDLARRDLTINAIAYNDKVG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG DL+N I+ +GD R +D LRILR RF + YG +ID + A + K Sbjct: 127 MVDLYGGAEDLKNGIIRCVGDPMKRFDDDGLRILRALRFASRYG-FSIDKETSDAIHRQK 185 Query: 195 KGLKILSSERIWSEINKLL 213 L +S+ERI SE+ +L Sbjct: 186 FLLSFISAERINSELCGIL 204 >gi|22537488|ref|NP_688339.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae 2603V/R] gi|25011453|ref|NP_735848.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae NEM316] gi|77406286|ref|ZP_00783352.1| polyA polymerase family protein [Streptococcus agalactiae H36B] gi|77411183|ref|ZP_00787535.1| polyA polymerase family protein [Streptococcus agalactiae CJB111] gi|73619865|sp|Q8E4J0|CCA_STRA3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619866|sp|Q8DYY1|CCA_STRA5 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|22534367|gb|AAN00212.1|AE014253_10 polyA polymerase family protein [Streptococcus agalactiae 2603V/R] gi|24412991|emb|CAD47070.1| unknown [Streptococcus agalactiae NEM316] gi|77162801|gb|EAO73760.1| polyA polymerase family protein [Streptococcus agalactiae CJB111] gi|77175098|gb|EAO77901.1| polyA polymerase family protein [Streptococcus agalactiae H36B] Length = 402 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 190/404 (47%), Gaps = 24/404 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + I Sbjct: 14 LPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++ G Sbjct: 70 EHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 130 EVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKKH 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 189 ASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLDK 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + +FE + I+ + + K+ L K + ++ ++ + Q L+ Sbjct: 249 DFLFETSEQAWASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIR-EQMGLT--- 304 Query: 313 IKKLFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 K+ Y YG ++ I L + + + D+ IH + + G Sbjct: 305 -KEHLYRYGKTIIKQAEGIRKARGLMVDFEKIEQLDSEL-------AIHDRHEIVVNGGT 356 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + K GI PG ++G+I+ + + +E + H +++ + Sbjct: 357 LIKKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400 >gi|297379841|gb|ADI34728.1| CCA-adding enzyme [Helicobacter pylori v225d] Length = 407 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 VID G N ++N+ I+ +G+ R ED LRILR RF A G K I A Sbjct: 125 SPTKGVIDPFKGQNAIKNQIIECVGEVRLRFFEDALRILRALRFSAALGFK-IAPSTKKA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 IFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|237746883|ref|ZP_04577363.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS] gi|229378234|gb|EEO28325.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS] Length = 461 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 11/236 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 I ++ +L+ K+ IVGGAVRD L+ L +D D+AT P++V R+F + R+++ Sbjct: 42 IRVVRILHNAGYKAFIVGGAVRDLLLGLKPKDFDVATDATPEQVKRLFRRAFVIGRRFQI 101 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + I++ + L+ D GR + + D+ RRDFTINA+Y + Sbjct: 102 VHVLLGQELIEVTTFRGSSTKPALKDDA---GRLLRDNSFGTQEEDAARRDFTINAMYYN 158 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++ DY GG+NDLRNRT+K IGD R ED +R+LR RF A G +ID Sbjct: 159 PANQLLLDYHGGMNDLRNRTLKIIGDPEQRYREDPVRMLRIVRFAAKLG-FSIDPATRAP 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + + S R++ E+ KLL + + ++ + + G+ K + L + +++L+Q Sbjct: 218 IASLAPLINNVPSARLFDEMLKLLMSGHAMSCLKELRTRGLHKGL-LPLLDVALEQ 272 >gi|77409475|ref|ZP_00786167.1| polyA polymerase family protein [Streptococcus agalactiae COH1] gi|77171918|gb|EAO75095.1| polyA polymerase family protein [Streptococcus agalactiae COH1] Length = 402 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 190/404 (47%), Gaps = 24/404 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + I Sbjct: 14 LPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++ G Sbjct: 70 EHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 130 EVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKKH 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 189 APLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLDK 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + +FE + I+ + + K+ L K + ++ ++ + Q L+ Sbjct: 249 DFLFETSEQAWASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIR-EQMGLT--- 304 Query: 313 IKKLFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 K+ Y YG ++ I L + + + D+ IH + + G Sbjct: 305 -KEHLYRYGKTIIKQAEGIRKARGLMVDFEKIEQLDSEL-------AIHDRHEIVVNGGT 356 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + K GI PG ++G+I+ + + +E + H +++ + Sbjct: 357 LIKKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400 >gi|257125451|ref|YP_003163565.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leptotrichia buccalis C-1013-b] gi|257049390|gb|ACV38574.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leptotrichia buccalis C-1013-b] Length = 588 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 6/216 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D+ IL LNK +VGGAVRD ++N D D AT I + RIF+ Y Sbjct: 6 DKDVKFILKQLNKN-GTGFLVGGAVRDKILNKDPGDYDFATDIEYSELKRIFAD--YNPK 62 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYA 129 +G + I K ++I R + + + RY K + F + + D RRDFTIN+L Sbjct: 63 EMGAHFGILMIKVNGKSYEIAKFRKETGVYNSRYPKEIKFVKTIEEDLSRRDFTINSLAY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++ ++D GG D++ + I+F+G RI ED LRILR FRF + G N+D A Sbjct: 123 NEETGIVDLYGGKQDIKRKVIRFVGKPKLRIEEDALRILRAFRFISKLG-FNLDKKTAEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 +K L +S ERI+ E++K+L A++ M Sbjct: 182 ICNKRKFLTKISKERIFDELSKILMGNFAKKALIEM 217 >gi|317180474|dbj|BAJ58260.1| poly(A) polymerase [Helicobacter pylori F32] Length = 407 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGLIDPFKGQNAIKNQMIECVGEARLRFFEDALRILRALRFSATLGFKIVLSTK-EA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|77414516|ref|ZP_00790663.1| polyA polymerase family protein [Streptococcus agalactiae 515] gi|77159439|gb|EAO70603.1| polyA polymerase family protein [Streptococcus agalactiae 515] Length = 402 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 190/404 (47%), Gaps = 24/404 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + I Sbjct: 14 LPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++ G Sbjct: 70 EHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNEDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 130 EVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKKH 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 189 ASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLDK 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + +FE + I+ + + K+ L K + ++ ++ + Q L+ Sbjct: 249 DFLFETSEQAWASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIR-EQMGLA--- 304 Query: 313 IKKLFYLYGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 K+ Y YG ++ I L + + + D+ IH + + G Sbjct: 305 -KEHLYRYGKTIIKQAEGIRKARGLMVDFEKIEQLDSEL-------AIHDRHEIVVNGGT 356 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + K GI PG ++G+I+ + + +E + H +++ + Sbjct: 357 LIKKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400 >gi|255311533|ref|ZP_05354103.1| polyA polymerase [Chlamydia trachomatis 6276] gi|255317834|ref|ZP_05359080.1| polyA polymerase [Chlamydia trachomatis 6276s] Length = 410 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 100/189 (52%), Gaps = 8/189 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ ++++DIAT P V IF T + ++G I + + Sbjct: 22 QAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIGAAFGIIAVKENGQ 77 Query: 88 YFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDL 145 F++ T RSD DGR+ V K D++RRDFTIN +Y D + K+ D V G DL Sbjct: 78 LFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFEEKLFDLVEGRADL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK-ILSSER 204 + I+ IG R LED LRILR RF A G +D A IK L +S ER Sbjct: 138 ERKIIRAIGHPRQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIKELPSLPNSVSPER 196 Query: 205 IWSEINKLL 213 IW E+ K+L Sbjct: 197 IWQELKKML 205 >gi|319745265|gb|EFV97583.1| polyA polymerase family protein [Streptococcus agalactiae ATCC 13813] Length = 403 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 7/202 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + I Sbjct: 15 LPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVGI 70 Query: 76 SYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ + R ++V F R + D RRDFT+NA ++ G Sbjct: 71 EHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNEDG 130 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 131 EVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKKH 189 Query: 194 KKGLKILSSERIWSEINKLLEA 215 L+ +S ER + E +KLL A Sbjct: 190 APLLEKISVERSFIEFDKLLLA 211 >gi|260893598|ref|YP_003239695.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ammonifex degensii KC4] gi|260865739|gb|ACX52845.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ammonifex degensii KC4] Length = 473 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 3/206 (1%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 LI +L +L + ++ +VGGAVRD L+ D+D+AT+ P V+ + + K + Sbjct: 9 LIKVLKMLEEAGFEAYVVGGAVRDYLLGKPPVDLDVATSARPQEVLDLVVQKGLKAVTYG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQ 132 ++G + ++ ++ T RS++ + R KV F + D RRDFTINA+ D + Sbjct: 69 AAFGVVGVLVEGSLVEVATFRSEVYGEDPHRPEKVDFLGRLEEDLARRDFTINAMAMDLR 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ D GG DLR R I+ +G+ R ED LR R RF A G ++ A + Sbjct: 129 GKLYDPFGGQEDLRRRIIRAVGNPIKRFQEDALRAFRACRFAAQLG-YQVEPRTRSALSQ 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNP 218 K+ + LS ER+ EI ++L + P Sbjct: 188 VKERVARLSVERVRDEIERILISDYP 213 >gi|323341636|ref|ZP_08081869.1| tRNA adenylyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464061|gb|EFY09254.1| tRNA adenylyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 443 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 115/200 (57%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I ++ L N+G + +VGG VRD+LM DID+ T LP+++++I+ K Y + Sbjct: 12 IVMMELTNRGFE-VFVVGGFVRDALMGHRSFDIDLCTNALPEQLLKIYKK--YSIESNGH 68 Query: 76 SYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 YG IK + +++F+I+T+R D R ++V F DS RRDFT+NALY + Sbjct: 69 DYG-IKFMSGEEHFEISTMRLEGDYEDGRRPSRVEFINHLFDDSKRRDFTVNALYYHPRH 127 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +IDY G+ DL+N T++ IGD R ED LRI R +RF + G +ID++ L Sbjct: 128 GLIDYYDGVKDLQNHTLRVIGDPKVRFKEDVLRIARLYRFKSELG-FDIDAETLYVVQTQ 186 Query: 194 KKGLKILSSERIWSEINKLL 213 + L+ L +I+ E+++ L Sbjct: 187 IESLQRLKLVQIYPELSRYL 206 >gi|116747757|ref|YP_844444.1| polynucleotide adenylyltransferase region [Syntrophobacter fumaroxidans MPOB] gi|116696821|gb|ABK16009.1| Polynucleotide adenylyltransferase region [Syntrophobacter fumaroxidans MPOB] Length = 427 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 17/229 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D++ ++ +L+ +VGGA+RD + + +D D+AT D V+R+F + VIP Sbjct: 12 PDVMAMMGILSDAGHGVWLVGGALRDHFLGQAPRDFDLATDASADEVVRLFPR----VIP 67 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 I +GT+++ R + ++T+ T G + + D RRDFTINAL Sbjct: 68 IGIRHGTVQVHTRTRDVEVTS------TPGSGLEGILE-----DLGRRDFTINALALSYP 116 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G +D GG ND R ++ +GDA R ED LR+LR FRF + G +++ A+ Sbjct: 117 EGSFLDPHGGCNDADARILRAVGDAGRRFREDPLRVLRVFRFVSELG-LDVEPGTCAAAR 175 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 GL ++ ER+ E+ ++L N ++A+ M + + + ++ E Sbjct: 176 SEANGLAAVAGERVREEVFRILSGGNAVSALRLMEESRVLRTVLPELHE 224 >gi|296436248|gb|ADH18422.1| polyA polymerase [Chlamydia trachomatis G/9768] gi|296437177|gb|ADH19347.1| polyA polymerase [Chlamydia trachomatis G/11222] gi|296438108|gb|ADH20269.1| polyA polymerase [Chlamydia trachomatis G/11074] gi|297140609|gb|ADH97367.1| polyA polymerase [Chlamydia trachomatis G/9301] Length = 410 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 100/189 (52%), Gaps = 8/189 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ ++++DIAT P V IF T + ++G I + + Sbjct: 22 QAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIGAAFGIIAVKENGQ 77 Query: 88 YFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDL 145 F++ T RSD DGR+ V K D++RRDFTIN +Y D + K+ D V G DL Sbjct: 78 LFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFEEKLFDLVEGRADL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK-ILSSER 204 + I+ IG R LED LRILR RF A G +D A IK L +S ER Sbjct: 138 ERKIIRAIGHPRQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIKELPSLPNSVSPER 196 Query: 205 IWSEINKLL 213 IW E+ K+L Sbjct: 197 IWQELKKML 205 >gi|229132445|ref|ZP_04261299.1| CCA-adding enzyme [Bacillus cereus BDRD-ST196] gi|228651151|gb|EEL07132.1| CCA-adding enzyme [Bacillus cereus BDRD-ST196] Length = 385 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 126/238 (52%), Gaps = 22/238 (9%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56 Query: 81 KIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+++D Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G +R + I +GDA R ED LR++R RF + + G IK K+ ++ Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRF--------VSTLGFSLEIKTKQAIE 168 Query: 199 I-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248 ++ ERI E KLL + +N + + +F + +L + E L + +Q Sbjct: 169 TYGHLLEHIAIERITVEFEKLLTGTSCVNGLQELVETKLFSHLPYLQMSEERLLKATQ 226 >gi|15605437|ref|NP_220223.1| polyA polymerase [Chlamydia trachomatis D/UW-3/CX] gi|166154921|ref|YP_001653176.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|3329159|gb|AAC68299.1| Poly A Polymerase [Chlamydia trachomatis D/UW-3/CX] gi|165930909|emb|CAP06471.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|297748835|gb|ADI51381.1| Poly(A) polymerase [Chlamydia trachomatis D-EC] gi|297749715|gb|ADI52393.1| Poly(A) polymerase [Chlamydia trachomatis D-LC] Length = 410 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 100/189 (52%), Gaps = 8/189 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ ++++DIAT P V IF T + ++G I + + Sbjct: 22 QAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIGAAFGIIAVKENGQ 77 Query: 88 YFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDL 145 F++ T RSD DGR+ V K D++RRDFTIN +Y D + K+ D V G DL Sbjct: 78 LFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFEEKLFDLVEGRADL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK-ILSSER 204 + I+ IG R LED LRILR RF A G +D A IK L +S ER Sbjct: 138 ERKIIRAIGHPKQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIKELPSLPNSVSPER 196 Query: 205 IWSEINKLL 213 IW E+ K+L Sbjct: 197 IWQELKKML 205 >gi|255101627|ref|ZP_05330604.1| putative poly(A) polymerase [Clostridium difficile QCD-63q42] gi|255307496|ref|ZP_05351667.1| putative poly(A) polymerase [Clostridium difficile ATCC 43255] Length = 445 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/199 (37%), Positives = 111/199 (55%), Gaps = 9/199 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F KT IPT I + Sbjct: 13 IIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQH 68 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ + + + Sbjct: 69 GTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSKTGL 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G D++N+ I +G+ R ED LR+LR RF A K ++G SI K Sbjct: 129 VDPFNGYEDIQNKYIHCVGNPVDRFEEDALRMLRAVRFSAQLNFK--IAEGTKQSIHKKA 186 Query: 196 GL-KILSSERIWSEINKLL 213 L K +S ERI +E NK+L Sbjct: 187 DLIKNVSIERIQTEFNKIL 205 >gi|315586679|gb|ADU41060.1| poly(A) polymerase [Helicobacter pylori 35A] Length = 407 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSATLGFKIVLSTK-EA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|260101624|ref|ZP_05751861.1| poly A polymerase [Lactobacillus helveticus DSM 20075] gi|260084557|gb|EEW68677.1| poly A polymerase [Lactobacillus helveticus DSM 20075] Length = 399 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 116/417 (27%), Positives = 187/417 (44%), Gaps = 54/417 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T I Sbjct: 15 MPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTGI 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G Sbjct: 71 RHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLYG 130 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A Sbjct: 131 QIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKDN 189 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD--------Q 245 + LK +S ERI E K+ + A +IFLD Q +S D + Sbjct: 190 HELLKKISVERIREEFVKMGIGPHSRQAF----------QIFLDTQ-LSEDVPDFAGKKE 238 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE-IRYFLISFFNCNFN 304 L Q+ Q SL I+++ LP E I F+ + N N Sbjct: 239 LLQIYPQLQFSPTLETSLWSLIIIL--------------LKLPDEDISKFMRDWKNS--N 282 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL------QVLSD---I 355 T + I K F L D ++F A + D IL + L D Sbjct: 283 AMTEQVERIIKFFDLISDHTP-NDYELFQAGERTIINTIDVAHILGQPVASEALVDRYLA 341 Query: 356 IHWKKPL-FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + KKP + G ++K+G+ PG ++G+ L ++ ++S + S + + L L Sbjct: 342 LPIKKPAELAIDGRFLIKHGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398 >gi|116512356|ref|YP_809572.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris SK11] gi|123025314|sp|Q02Y22|CCA_LACLS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116108010|gb|ABJ73150.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactococcus lactis subsp. cremoris SK11] Length = 402 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 183/380 (48%), Gaps = 24/380 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK- 86 ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I I +GT+ ++ K Sbjct: 26 EAYFVGGSVRDVLLGREIHDVDIATSAYPEEIKDIFPYT----IDVGIEHGTVLVLAGKS 81 Query: 87 --KYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++++ITT R++ TD R V F RD + D RRDFT+NA D +G++ID GL Sbjct: 82 EAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFACDFEGQIIDLFDGL 141 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ R + +G A R ED LRI+R R FA + I+ A + L+ +S Sbjct: 142 TDLKERRLTAVGSALERFNEDALRIMRAMR-FASTLDFKIEEKTFSAMRERSHLLEKISV 200 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ERI+ E++KLL N + + +K D Q+++L ++ + + F+ + Sbjct: 201 ERIFIELDKLLLGSEWRNGLTLLIESEAWK-YLPDFQDLALKKVLTELSVDFHFKNSEQA 259 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + S D K L +K+ + E ++ + L ++ L++ + Sbjct: 260 WAALLTRFSNIDVKVFL---RKWKVSNEFSKYVADLVSAY----ELENWDLVSLYHFGLE 312 Query: 323 K-VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 K +++ +LKI ++ + FI L IH K + D + ++ + PG ++ Sbjct: 313 KALLVDELKIAFG---RDIDRERAVFINDQLQ--IHDKSEIVIAGKDLMDEFSLKPGPEL 367 Query: 382 GNILVHCKQEWINSSFQLSQ 401 G IL +++ + + + Q Sbjct: 368 GKILKTIEEKIVKNELKNEQ 387 >gi|320546952|ref|ZP_08041253.1| polyA polymerase family protein [Streptococcus equinus ATCC 9812] gi|320448354|gb|EFW89096.1| polyA polymerase family protein [Streptococcus equinus ATCC 9812] Length = 401 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 126/238 (52%), Gaps = 9/238 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + IL + + ++ VGG+VRD L++ + D+DIAT+ P+ IF +T + I Sbjct: 14 LPILKKIREAGYEAYFVGGSVRDVLLHRPIHDVDIATSSYPEETKSIFHRT----VDIGI 69 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ ++ITT R+ D+ D R + V F R + D RRDFT+NA D+ G Sbjct: 70 EHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDETG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID GL+DL+ + ++ +G+ R ED LRI+R FRF A + +I+ + A Sbjct: 130 LIIDKFNGLDDLKAKLLRAVGNPAERFNEDALRIMRGFRFSASL-DFDIEPETFAAMAAH 188 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A I M K +L E + D L Q+++ Sbjct: 189 APLLEKISVERSFIEFDKLLMAPFWRKGITAMIASDAQK--YLPYLENAHDNLQQLLD 244 >gi|255349096|ref|ZP_05381103.1| polyA polymerase [Chlamydia trachomatis 70] gi|255503633|ref|ZP_05382023.1| polyA polymerase [Chlamydia trachomatis 70s] gi|255507312|ref|ZP_05382951.1| polyA polymerase [Chlamydia trachomatis D(s)2923] gi|289525748|emb|CBJ15229.1| polyA polymerase [Chlamydia trachomatis Sweden2] gi|296435320|gb|ADH17498.1| polyA polymerase [Chlamydia trachomatis E/150] gi|296439037|gb|ADH21190.1| polyA polymerase [Chlamydia trachomatis E/11023] Length = 410 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 100/189 (52%), Gaps = 8/189 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ ++++DIAT P V IF T + ++G I + + Sbjct: 22 QAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIGAAFGIIAVKENGQ 77 Query: 88 YFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDL 145 F++ T RSD DGR+ V K D++RRDFTIN +Y D + K+ D V G DL Sbjct: 78 LFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFEEKLFDLVEGRADL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK-ILSSER 204 + I+ IG R LED LRILR RF A G +D A IK L +S ER Sbjct: 138 ERKIIRAIGHPKQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIKELPSLPNSVSPER 196 Query: 205 IWSEINKLL 213 IW E+ K+L Sbjct: 197 IWQELKKML 205 >gi|317489811|ref|ZP_07948308.1| poly A polymerase head domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325829889|ref|ZP_08163347.1| tRNA adenylyltransferase [Eggerthella sp. HGA1] gi|316911060|gb|EFV32672.1| poly A polymerase head domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325488056|gb|EGC90493.1| tRNA adenylyltransferase [Eggerthella sp. HGA1] Length = 465 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 106/210 (50%), Gaps = 3/210 (1%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + L L ++ IVGG VRD+L+ DIDIAT V R+F Y+ T Sbjct: 20 LAALDALENAGFETWIVGGYVRDALLGRPSSDIDIATQAHWQDVQRVFEGQGYRTHETGT 79 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ +I ++ ++TT RSD D R+ +V F R D RRDFT+NAL Sbjct: 80 AHGTLTVIVDEQALEVTTYRSDGAYADARHPNQVSFVRTIAEDLARRDFTMNALAYHPAR 139 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D GG DL R I+ +GD R ED LR+LR RF A G ID + + Sbjct: 140 GLFDPYGGHADLEARIIRAVGDPDRRFSEDALRMLRACRFAAELG-FAIDPNTFEGMLAN 198 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIV 223 K L +S+ERI E+ +LL ++ A+ Sbjct: 199 KGLLPRISTERITHELQRLLLGEHAGRALT 228 >gi|317012456|gb|ADU83064.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori Lithuania75] Length = 402 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDIYEKSSYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSAHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G A R ED LRILR RF A+ G K I A Sbjct: 125 SPTKGLIDPFKGQNAIENQMIECVGGARLRFFEDALRILRALRFSANLGFK-IAPSTKRA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|268319581|ref|YP_003293237.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Lactobacillus johnsonii FI9785] gi|262397956|emb|CAX66970.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Lactobacillus johnsonii FI9785] Length = 398 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T I + Sbjct: 16 VLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G + Sbjct: 72 GTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVDGNI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A + Sbjct: 132 IDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L +S ERI E K+ A A + G+ +E+ Sbjct: 191 LLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV 229 >gi|227893497|ref|ZP_04011302.1| tRNA CCA-pyrophosphorylase [Lactobacillus ultunensis DSM 16047] gi|227864722|gb|EEJ72143.1| tRNA CCA-pyrophosphorylase [Lactobacillus ultunensis DSM 16047] Length = 399 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 7/197 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L++ V D+DI T+ P+ V ++F K+ I T I + Sbjct: 17 VLQTLESAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKKLFEKS----IDTGIKH 72 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ + ++ITT R++ R V F ++ D RRDFTINAL D +G++ Sbjct: 73 GTVTILYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDTRGEI 132 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GL DL+N I+ +G+ R ED LR++R RF + E ++ + A + Sbjct: 133 VDLFDGLKDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEENTEQAIKDNHE 191 Query: 196 GLKILSSERIWSEINKL 212 LK +S ERI E K+ Sbjct: 192 LLKKISVERIREEFVKM 208 >gi|332637876|ref|ZP_08416739.1| CCA-adding enzyme [Weissella cibaria KACC 11862] Length = 405 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 112/210 (53%), Gaps = 7/210 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL + ++ VGG+VRD+L+ + D+DIAT+ P+ V +F +T + T I + Sbjct: 16 ILETIEAAGFEAYFVGGSVRDTLLGKPIHDVDIATSAYPEEVKALFERT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ + ++ TT R++ TD R +V F R D RRDFT+NA + G++ Sbjct: 72 GTVMILDHGQGYETTTFRTESTYTDFRRPDEVTFVRSLAEDLKRRDFTVNAFALTKDGEI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GL+D+ N ++ +G+A R ED LR++R RF A K I++ L A Sbjct: 132 IDMFDGLSDMDNHILRAVGEAEERFHEDALRMMRAVRFAAQLDFK-IEAATLQAIKDNAP 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHM 225 L ++ ER E KLL+ K ++ M Sbjct: 191 LLANIAIERTNVEFTKLLQGKAARYGLLEM 220 >gi|228477863|ref|ZP_04062477.1| cca-adding enzyme [Streptococcus salivarius SK126] gi|228250353|gb|EEK09593.1| cca-adding enzyme [Streptococcus salivarius SK126] Length = 395 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + I +GT+ ++ Sbjct: 21 EAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIGIEHGTVLVLENGG 76 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R + D RRDFT+NA ++ +VID GL DL Sbjct: 77 EYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNENAEVIDKFNGLADL 136 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R RF A + +I+ A L+ +S ER Sbjct: 137 DNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFQAMTSHAPLLEKISIERS 195 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 196 FIEFDKLLLA 205 >gi|42519026|ref|NP_964956.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii NCC 533] gi|73619783|sp|Q74JK7|CCA_LACJO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|41583313|gb|AAS08922.1| poly(A) polymerase [Lactobacillus johnsonii NCC 533] Length = 398 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T I + Sbjct: 16 VLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G + Sbjct: 72 GTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVDGNI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A + Sbjct: 132 IDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L +S ERI E K+ A A + G+ +E+ Sbjct: 191 LLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV 229 >gi|76789444|ref|YP_328530.1| polyA polymerase [Chlamydia trachomatis A/HAR-13] gi|237803134|ref|YP_002888328.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT] gi|237805055|ref|YP_002889209.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT] gi|76167974|gb|AAX50982.1| polyA polymerase [Chlamydia trachomatis A/HAR-13] gi|231273355|emb|CAX10270.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274368|emb|CAX11163.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT] Length = 410 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 100/189 (52%), Gaps = 8/189 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ ++++DIAT P + IF T + ++G I + + Sbjct: 22 QAYFVGGSVRDMLLGRPIEEVDIATNASPTIITTIFPDT----LSIGAAFGIIAVKENGQ 77 Query: 88 YFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDL 145 F++ T RSD DGR+ V K D++RRDFTIN +Y D + K+ D V G DL Sbjct: 78 LFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFEEKLFDLVEGRADL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK-ILSSER 204 + I+ IG R LED LRILR RF A G +D A IK L +S ER Sbjct: 138 ERKIIRAIGHPKQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIKELPSLPNSVSPER 196 Query: 205 IWSEINKLL 213 IW E+ K+L Sbjct: 197 IWQELKKML 205 >gi|307637329|gb|ADN79779.1| tRNA nucleotidyltransferase [Helicobacter pylori 908] gi|325995920|gb|ADZ51325.1| tRNA nucleotidyltransferase [Helicobacter pylori 2018] gi|325997514|gb|ADZ49722.1| Polynucleotide adenylyltransferase [Helicobacter pylori 2017] Length = 402 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 3/189 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD LM ++ +D D+ + L + + K ++V+ T I +GTI + + ++ Sbjct: 24 LVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHGTITALKNHQSYE 83 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G + + N+ Sbjct: 84 ITTFRMEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAYSPTKGLIDPFKGRSAIENQ 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 TI+ +G A R ED LRILR RF A G K I + A K LK LS ER+ SE Sbjct: 144 TIECVGGARLRFFEDALRILRALRFSATLGFK-IAASTKRAVFACKDLLKHLSKERLQSE 202 Query: 209 INKLLEAKN 217 +NKLL KN Sbjct: 203 LNKLLMGKN 211 >gi|229084643|ref|ZP_04216911.1| CCA-adding enzyme [Bacillus cereus Rock3-44] gi|228698666|gb|EEL51383.1| CCA-adding enzyme [Bacillus cereus Rock3-44] Length = 384 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 8/230 (3%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + K ++ VGG+VRD ++N + DIDIAT+ LPD VM +F + +P + +GT+ Sbjct: 1 MKKHGHEAYFVGGSVRDFIINRPIGDIDIATSALPDEVMHLFPRH----VPVGLEHGTVI 56 Query: 82 IICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 ++ +++TT R SD R + V F R + D RRDFT+NA+ +++G +ID Sbjct: 57 VVQEGVPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGAIIDLF 116 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 G +R + I +G+A R ED LR++R RF + G +++ A K L+ Sbjct: 117 SGQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLG-FSLEEKTKQAIEKYGHLLEH 175 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248 ++ ERI E KLL + + + +F + +L + E L + +Q Sbjct: 176 IAIERITVEFEKLLTGTCCVKGLQELVETKLFTHLPYLQMSEERLLEAAQ 225 >gi|322372335|ref|ZP_08046871.1| polyA polymerase [Streptococcus sp. C150] gi|321277377|gb|EFX54446.1| polyA polymerase [Streptococcus sp. C150] Length = 400 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 7/202 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L+N + D+DIA++ P+ ++F +T + Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQVFERT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R+ D+ D R + V F R + D RRDFT+NA ++ Sbjct: 68 GIEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +VID GL DL NR ++ +G A R ED LRI+R RF A + +I+ A Sbjct: 128 NAEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFEAMT 186 Query: 192 KAKKGLKILSSERIWSEINKLL 213 L+ +S ER + E +KLL Sbjct: 187 SHAPLLEKISIERSFIEFDKLL 208 >gi|329667440|gb|AEB93388.1| poly(A) polymerase [Lactobacillus johnsonii DPC 6026] Length = 398 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T I + Sbjct: 16 VLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G + Sbjct: 72 GTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVDGNI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A + Sbjct: 132 IDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L +S ERI E K+ A A + G+ +E+ Sbjct: 191 LLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV 229 >gi|300361590|ref|ZP_07057767.1| tRNA adenylyltransferase [Lactobacillus gasseri JV-V03] gi|300354209|gb|EFJ70080.1| tRNA adenylyltransferase [Lactobacillus gasseri JV-V03] Length = 398 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T I + Sbjct: 16 VLKQINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G V Sbjct: 72 GTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVDGNV 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A + Sbjct: 132 IDHFDGLGDLDKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L +S ERI E K+ A A + G+ +E+ Sbjct: 191 LLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV 229 >gi|308063569|gb|ADO05456.1| poly(A) polymerase [Helicobacter pylori Sat464] Length = 388 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 107/208 (51%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITAFKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 VID G N + N+ I+ +G+A R ED LRILR RF A G K I A Sbjct: 125 SPTKGVIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NK L KN Sbjct: 184 IFAYKDLLKHLSKERLQSELNKFLMGKN 211 >gi|317014060|gb|ADU81496.1| polynucleotide adenylyltransferase [Helicobacter pylori Gambia94/24] Length = 404 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 3/189 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD LM ++ +D D+ + L + + K ++V+ T I +GTI + + ++ Sbjct: 24 LVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHGTITALKNHQSYE 83 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G + + N+ Sbjct: 84 ITTFRMEKGHIKHRKPKELVFSARLMDDLKRRDFSMNAIAYSPTKGLIDPFKGRSAIENQ 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 TI+ +G+A R ED LRILR RF A G K I + A K LK LS ER+ SE Sbjct: 144 TIECVGEARLRFFEDALRILRALRFSATLGFK-IAASTKRAVFACKDLLKHLSKERLQSE 202 Query: 209 INKLLEAKN 217 +NKLL KN Sbjct: 203 LNKLLMGKN 211 >gi|15645264|ref|NP_207434.1| poly(A) polymerase (papS) [Helicobacter pylori 26695] gi|2313761|gb|AAD07702.1| poly(A) polymerase (papS) [Helicobacter pylori 26695] Length = 402 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EEGLKELFDIYEKSSHELYLVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSVHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF A G K I + A Sbjct: 125 SPTKGLIDPFKGQNAIENQMIECVGEARLRFFEDALRILRSLRFSATLGFK-IAPNTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|261838119|gb|ACX97885.1| poly(A) polymerase [Helicobacter pylori 51] Length = 407 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELKELFEIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKDLLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S Sbjct: 125 SPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFGATLGFKIVPSTK-RE 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 IFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|217034768|ref|ZP_03440166.1| hypothetical protein HP9810_861g10 [Helicobacter pylori 98-10] gi|216942712|gb|EEC22273.1| hypothetical protein HP9810_861g10 [Helicobacter pylori 98-10] Length = 407 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG +RD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPHELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFSATLGFKIVLSTK-EA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NK L KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKFLMGKN 211 >gi|260684047|ref|YP_003215332.1| putative poly(A) polymerase [Clostridium difficile CD196] gi|260687707|ref|YP_003218841.1| putative poly(A) polymerase [Clostridium difficile R20291] gi|260210210|emb|CBA64432.1| putative poly(A) polymerase [Clostridium difficile CD196] gi|260213724|emb|CBE05620.1| putative poly(A) polymerase [Clostridium difficile R20291] Length = 470 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 9/189 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD L+ D DI T+ P+ V+ +F KT IPT I +GT+ ++ + Sbjct: 48 EAYVVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQHGTVTVMIEHE 103 Query: 88 YFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 F++TT R D +DGR+ + FT + D RRDFTIN++ + + ++D G D+ Sbjct: 104 PFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSKTGLVDPFNGYEDI 163 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSER 204 +N+ I+ +G+ R ED LR+LR RF A K ++G SI K L K +S ER Sbjct: 164 QNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNFK--IAEGTKQSIHKKADLIKNVSIER 221 Query: 205 IWSEINKLL 213 I +E NK+L Sbjct: 222 IQTEFNKIL 230 >gi|254976061|ref|ZP_05272533.1| putative poly(A) polymerase [Clostridium difficile QCD-66c26] gi|255093452|ref|ZP_05322930.1| putative poly(A) polymerase [Clostridium difficile CIP 107932] gi|255315194|ref|ZP_05356777.1| putative poly(A) polymerase [Clostridium difficile QCD-76w55] gi|255517863|ref|ZP_05385539.1| putative poly(A) polymerase [Clostridium difficile QCD-97b34] gi|255650979|ref|ZP_05397881.1| putative poly(A) polymerase [Clostridium difficile QCD-37x79] Length = 445 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 9/189 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD L+ D DI T+ P+ V+ +F KT IPT I +GT+ ++ + Sbjct: 23 EAYVVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQHGTVTVMIEHE 78 Query: 88 YFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 F++TT R D +DGR+ + FT + D RRDFTIN++ + + ++D G D+ Sbjct: 79 PFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSKTGLVDPFNGYEDI 138 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSER 204 +N+ I+ +G+ R ED LR+LR RF A K ++G SI K L K +S ER Sbjct: 139 QNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNFK--IAEGTKQSIHKKADLIKNVSIER 196 Query: 205 IWSEINKLL 213 I +E NK+L Sbjct: 197 IQTEFNKIL 205 >gi|323464448|gb|ADX76601.1| tRNA CCA-pyrophosphorylase [Staphylococcus pseudintermedius ED99] Length = 400 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD +MN + D+DI T PD + +F T IP +GTI ++ + Sbjct: 22 EAYFVGGSVRDFIMNRPIHDVDITTNATPDEIESLFEHT----IPIGKEHGTINVVWSHE 77 Query: 88 YFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ + R +V F RD D RRDFT+NA+ + + ID+ G D+ Sbjct: 78 NYEVTTFRAEAEYVDHRRPTEVYFVRDLYQDVERRDFTMNAIAMNINYERIDHFEGERDI 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R I+ +GDA R ED LRILR RF + G I+ A L+ LS ERI Sbjct: 138 EQRIIRTVGDAKTRFDEDALRILRGLRFKSQLG-FTIEEATFEAMAHQMSDLEYLSIERI 196 Query: 206 WSEINKLLEA 215 +E+ L++ Sbjct: 197 MNELTLLIKG 206 >gi|319892449|ref|YP_004149324.1| tRNA nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317162145|gb|ADV05688.1| tRNA nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] Length = 400 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD +MN + D+DI T PD + +F T IP +GTI ++ + Sbjct: 22 EAYFVGGSVRDFIMNRPIHDVDITTNATPDEIESLFEHT----IPIGKEHGTINVVWSHE 77 Query: 88 YFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R++ + R +V F RD D RRDFT+NA+ + + ID+ G D+ Sbjct: 78 NYEVTTFRAEAEYVDHRRPTEVYFVRDLYQDVERRDFTMNAIAMNINYERIDHFEGERDI 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R I+ +GDA R ED LRILR RF + G I+ A L+ LS ERI Sbjct: 138 EQRIIRTVGDAKTRFDEDALRILRGLRFKSQLG-FTIEEATFEAMAHQMSDLEYLSIERI 196 Query: 206 WSEINKLLEA 215 +E+ L++ Sbjct: 197 MNELTLLIKG 206 >gi|229058273|ref|ZP_04196660.1| CCA-adding enzyme [Bacillus cereus AH603] gi|228720044|gb|EEL71630.1| CCA-adding enzyme [Bacillus cereus AH603] Length = 385 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 22/238 (9%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56 Query: 81 KIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+++D Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G +R + I +GDA R ED LR++R RF + + G IK K+ ++ Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRF--------VSTLGFSLEIKTKQAIE 168 Query: 199 I-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248 ++ ERI E KLL +N + + +F + +L + E L + +Q Sbjct: 169 TYGHLLEHIAIERITVEFEKLLTGTYCVNGLQELVETKLFSHLPYLQMSEERLLKATQ 226 >gi|229010946|ref|ZP_04168142.1| CCA-adding enzyme [Bacillus mycoides DSM 2048] gi|229166483|ref|ZP_04294239.1| CCA-adding enzyme [Bacillus cereus AH621] gi|228617057|gb|EEK74126.1| CCA-adding enzyme [Bacillus cereus AH621] gi|228750346|gb|EEM00176.1| CCA-adding enzyme [Bacillus mycoides DSM 2048] Length = 385 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 22/238 (9%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56 Query: 81 KIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+++D Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G +R + I +GDA R ED LR++R RF + + G IK K+ ++ Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRF--------VSTLGFSLEIKTKQAIE 168 Query: 199 I-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248 ++ ERI E KLL +N + + +F + +L + E L + +Q Sbjct: 169 TYGHLLEHIAIERITVEFEKLLTGTYCVNGLQELVETKLFSHLPYLQMSEERLLKATQ 226 >gi|166154046|ref|YP_001654164.1| polyA polymerase [Chlamydia trachomatis 434/Bu] gi|301335247|ref|ZP_07223491.1| polyA polymerase [Chlamydia trachomatis L2tet1] gi|165930034|emb|CAP03517.1| polyA polymerase [Chlamydia trachomatis 434/Bu] Length = 410 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 100/189 (52%), Gaps = 8/189 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ ++++DIAT P V IF T + ++G I + + Sbjct: 22 QAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIGAAFGIIAVKENGQ 77 Query: 88 YFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDL 145 F++ T RSD DGR+ V K D++RRDFTIN +Y D + K+ D V G DL Sbjct: 78 LFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFEEKLFDLVEGRADL 137 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK-ILSSER 204 + I+ IG R LED LRILR RF A G +D A IK L ++ ER Sbjct: 138 ERKIIRAIGHPKQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIKELPSLPNSVAPER 196 Query: 205 IWSEINKLL 213 IW E+ K+L Sbjct: 197 IWQELKKML 205 >gi|154500880|ref|ZP_02038918.1| hypothetical protein BACCAP_04565 [Bacteroides capillosus ATCC 29799] gi|150270380|gb|EDM97706.1| hypothetical protein BACCAP_04565 [Bacteroides capillosus ATCC 29799] Length = 438 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 12/202 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMN-LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 +L+LL ++ +VGGAVRD +M + +D DIAT+ LP +V +FS Y +I T + Sbjct: 9 TVLALLEASGFEAFLVGGAVRDYVMGKRAAKDWDIATSALPQQVKAVFSG--YHLIETGL 66 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 +GT+ ++ + +ITT R+D + +AD RRDFT+NAL + + V Sbjct: 67 KHGTVTVVVDHQPIEITTYRTD--------SGCPSPSLRADLERRDFTMNALAYNPRTGV 118 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D VGG D+ ++ GD R ED LRILR RF + YG ID+ A + + Sbjct: 119 VDLVGGAGDIEKGIVRCTGDPDRRFREDGLRILRALRFASVYG-MEIDAATADAIRRNQS 177 Query: 196 GLKILSSERIWSEINKLLEAKN 217 L+ ++ ERI E+ +L KN Sbjct: 178 LLRGVAVERIQVELTGILCGKN 199 >gi|317181954|dbj|BAJ59738.1| poly(A) polymerase [Helicobacter pylori F57] Length = 407 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG +RD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPHELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFSATLGFKIVLSTK-EA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NK L KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKFLMGKN 211 >gi|149924374|ref|ZP_01912741.1| Polynucleotide adenylyltransferase region [Plesiocystis pacifica SIR-1] gi|149814762|gb|EDM74334.1| Polynucleotide adenylyltransferase region [Plesiocystis pacifica SIR-1] Length = 408 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 14/232 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S ++ +L L++ +VGGAVRD+L+ D D+A+ P+ V+ +F KT IP Sbjct: 8 SAILAVLRTLDEAGFHGVVVGGAVRDALLGRDGGDWDVASNATPEEVIELFPKT----IP 63 Query: 73 TSISYGTIKIICRKK----YFDITTLRSD-LITDGRY-AKVVFTRDWKADSLRRDFTINA 126 T + +GT+ ++ + ++TT R + DGR ++V F RD D RRD TINA Sbjct: 64 TGLEHGTVTVLSGRGEDRHAVELTTFRGEGAYHDGRRPSEVRFLRDLTEDLARRDLTINA 123 Query: 127 LYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDS 184 L D V+ D GGL D+R I+ +G+ R ED LR +R RF A G ++ Sbjct: 124 LAWDPVNAVLTDAFGGLEDMRAGLIRAVGEPERRFNEDGLRTMRAVRFAATMGFALAPET 183 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +A A + +S ER+ E+ KLL A P + M G++ + L Sbjct: 184 EAAIAG--ALEVFAKVSRERVRVELVKLLRAPKPSLGLEPMVRTGLWAHVLL 233 >gi|302338404|ref|YP_003803610.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta smaragdinae DSM 11293] gi|301635589|gb|ADK81016.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta smaragdinae DSM 11293] Length = 451 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 28 KSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + C +VGGAVR+ + D D AT P V+ +F + VIPT I +GT+ ++ ++ Sbjct: 24 RECYLVGGAVRNMVAGWKPSDWDFATDAPPSEVISMFRR----VIPTGIKHGTVTVLFKQ 79 Query: 87 KYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLN 143 + +++TT R D +DGR V +T D D RRDFTINA+ + GK+ID G Sbjct: 80 EKYEVTTFRIDADYSDGRRPDAVTYTGDIYEDLSRRDFTINAMAINLNTGKLIDPHDGRA 139 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 D++ + I+ IGD R ED LR+LR RF A G + ++ A + L +S E Sbjct: 140 DIKRKLIRAIGDPQIRFAEDGLRLLRACRFTAQLGFR-LEEQTEKALSTCRFQLSNVSLE 198 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 RI EI K+L+A+ P + M GI +I Sbjct: 199 RIRDEIVKMLDAEKPSIGFLVMEKSGILSDIL 230 >gi|332673488|gb|AEE70305.1| poly(A) polymerase [Helicobacter pylori 83] Length = 407 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 108/208 (51%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K K +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELQELFDIYEKSSYKLYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF A G K I Sbjct: 125 SPTKGIIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSATLGFK-IAPSTKRE 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK +S ER+ SE+NKLL KN Sbjct: 184 IFACKYLLKHISKERLQSELNKLLMGKN 211 >gi|312864188|ref|ZP_07724422.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus vestibularis F0396] gi|311100189|gb|EFQ58398.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus vestibularis F0396] Length = 400 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 106/188 (56%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + I +GT+ ++ Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIGIEHGTVLVLENGG 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R + D RRDFT+NA ++ ++ID GL DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNENAEIIDKFNGLADL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R RF A + +I+ A L+ +S ER Sbjct: 142 DNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFQAMASHAPLLEKISIERS 200 Query: 206 WSEINKLL 213 + E +KLL Sbjct: 201 FIEFDKLL 208 >gi|222095266|ref|YP_002529326.1| tRNA cca-pyrophosphorylase [Bacillus cereus Q1] gi|254813687|sp|B9IVQ9|CCA_BACCQ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|221239324|gb|ACM12034.1| polyA polymerase [Bacillus cereus Q1] Length = 397 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++GK Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGK 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIMTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + A+ + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHLPYLQMSEEKLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|81428615|ref|YP_395615.1| polynucleotide adenyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|123564233|sp|Q38WX5|CCA_LACSS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|78610257|emb|CAI55306.1| Polynucleotide adenyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 397 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 7/222 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + IL + ++ VGG+VRD+L+ L + D+DIAT+ P + +IF +T + Sbjct: 11 AEALPILEQIEAAGFEAYFVGGSVRDNLLGLPIHDVDIATSAYPAEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ +++TT R++ R V F R + D RRDFTINAL Sbjct: 67 TGIQHGTVMILDHGNGYEVTTFRTETGYQDFRRPDSVTFVRSLEEDLKRRDFTINALAMR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL+ I+ +G A R ED LR++R RF + G ++ A Sbjct: 127 ADGEIIDLFDGIADLKAHKIRAVGVADERFHEDALRMMRAVRFESQLG-FSVTETTQAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 K L+ ++ ERI E KL++ N + + G+++ Sbjct: 186 EKHAALLEKIAIERIHVEFMKLMQGIERQNGLRTFIDTGLYR 227 >gi|256847161|ref|ZP_05552607.1| tRNA adenylyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256715825|gb|EEU30800.1| tRNA adenylyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 403 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 108/210 (51%), Gaps = 21/210 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L + + ++ VGG+VRD+++ ++ DIDIAT+ P + IF KT + T I + Sbjct: 16 VLQKIEQAGFEAYFVGGSVRDTILGDAIHDIDIATSAYPSEIKAIFKKT----VDTGIQH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ ++ TT R++ R +V F R K D RRDFTINAL + G + Sbjct: 72 GTVMILDHGTGYETTTFRTESGYQDYRRPDQVTFVRSLKDDLKRRDFTINALAMKEDGTI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSDGLV 188 ID GL DL+ I+ +GD R ED LR++R RF A ++ I+ G + Sbjct: 132 IDLFDGLGDLQRHLIRAVGDPEERFHEDALRMMRAVRFAAKLDFAIDPATQRGIEDHGEL 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNP 218 L ++ ERI E +KLL NP Sbjct: 192 --------LTKIAVERIEVEFSKLLLGINP 213 >gi|188527511|ref|YP_001910198.1| poly(A) polymerase [Helicobacter pylori Shi470] gi|188143751|gb|ACD48168.1| poly(A) polymerase [Helicobacter pylori Shi470] Length = 388 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 107/208 (51%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 VID G N + N+ I+ +G A R ED LRILR RF A G K I A Sbjct: 125 SPTKGVIDPFKGQNAIENQIIECVGGARLRFFEDALRILRALRFSAILGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NK L KN Sbjct: 184 IFACKDLLKHLSKERLQSELNKFLMGKN 211 >gi|317009345|gb|ADU79925.1| poly(A) polymerase [Helicobacter pylori India7] Length = 402 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 108/208 (51%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFDIYEKSSHELYLVGGCVRDRLMGITPKDYDLTSNALVNESKELLLKHDFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + K+VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKKLVFSAHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G A R ED LRILR RF A G K I A Sbjct: 125 SPTKGLIDPFKGQNAIENQIIECVGGARLRFFEDALRILRALRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFAYKDLLKHLSKERLQSELNKLLMGKN 211 >gi|108563048|ref|YP_627364.1| poly(A) polymerase [Helicobacter pylori HPAG1] gi|107836821|gb|ABF84690.1| poly(A) polymerase [Helicobacter pylori HPAG1] Length = 425 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 3/189 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD LM ++ +D D+ + L + I ++V+ T I +GTI + + ++ Sbjct: 24 LVGGCVRDCLMGITPKDYDLTSNALVNESKEILLNNHFRVLETGIKHGTITALKNHQSYE 83 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G N + N+ Sbjct: 84 ITTFRIEKGHIKHRKPKELVFSSRLTDDLKRRDFSMNAIAYSPTKGLIDPFKGQNAIENQ 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +G A R ED LRILR RF A G K + S A K LK LS ER+ SE Sbjct: 144 VIECVGGARLRFFEDALRILRALRFSATLGFKIVPSTK-EAVFACKDLLKHLSKERLQSE 202 Query: 209 INKLLEAKN 217 +NKLL KN Sbjct: 203 LNKLLMGKN 211 >gi|322517342|ref|ZP_08070217.1| polyA polymerase family protein [Streptococcus vestibularis ATCC 49124] gi|322124039|gb|EFX95592.1| polyA polymerase family protein [Streptococcus vestibularis ATCC 49124] Length = 400 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 106/188 (56%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + I +GT+ ++ Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIGIEHGTVLVLENGG 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R + D RRDFT+NA ++ ++ID GL DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNENAEIIDKFNGLADL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R RF A + +I+ A L+ +S ER Sbjct: 142 DNRVLRAVGKAEERFNEDALRIMRGLRFTASL-DFDIEEKTFQAMASHAPLLEKISIERS 200 Query: 206 WSEINKLL 213 + E +KLL Sbjct: 201 FIEFDKLL 208 >gi|326692490|ref|ZP_08229495.1| polynucleotide adenylyltransferase [Leuconostoc argentinum KCTC 3773] Length = 401 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 7/198 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+ + D+DIA+ P+ V + F KT + T I + Sbjct: 16 VLQRLEAAGFEAYFVGGSVRDMLLQKPIHDVDIASAAFPEEVKKQFDKT----VDTGIQH 71 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++ITT R++ TD R V F R D RRDFTINAL G++ Sbjct: 72 GTVMVLDHGLGYEITTFRTESTYTDFRRPDTVTFVRSLSEDLQRRDFTINALAMTYDGEI 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GL DL I+ +G+A R ED LR++R RF A G + I D A + Sbjct: 132 VDLFDGLADLSAGVIRAVGEAEVRFTEDALRMMRALRFSAQLGFQ-IAPDTRAALQRLAP 190 Query: 196 GLKILSSERIWSEINKLL 213 L ++ ERI E KLL Sbjct: 191 NLAKIAVERIRVEFEKLL 208 >gi|227889888|ref|ZP_04007693.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii ATCC 33200] gi|227849332|gb|EEJ59418.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii ATCC 33200] Length = 407 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 6/161 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT + T I + Sbjct: 25 VLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----VDTGIKH 80 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G + Sbjct: 81 GTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVDGNI 140 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 ID+ GL DL I+ +G A +R ED LR++R RF + Sbjct: 141 IDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQ 181 >gi|217959117|ref|YP_002337665.1| tRNA CCA-pyrophosphorylase [Bacillus cereus AH187] gi|226702038|sp|B7HL50|CCA_BACC7 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|217063697|gb|ACJ77947.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH187] Length = 397 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++GK Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGK 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + A+ + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHLPYLQMSEEKLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|312277828|gb|ADQ62485.1| PolyA polymerase family protein [Streptococcus thermophilus ND03] Length = 402 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 106/188 (56%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + I +GT+ ++ Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIGIEHGTVLVLENGG 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R + D RRDFT+NA ++ +VID GL DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNENAEVIDKFNGLADL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R RF A + +I+ A L+ +S ER Sbjct: 142 DNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFEAMTSHAFLLEKISIERS 200 Query: 206 WSEINKLL 213 + E +KLL Sbjct: 201 FIEFDKLL 208 >gi|206974941|ref|ZP_03235856.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus H3081.97] gi|206746960|gb|EDZ58352.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus H3081.97] Length = 397 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++GK Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGK 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + A+ + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHLPYLQMSEEKLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|237736527|ref|ZP_04567008.1| poly(a) polymerase [Fusobacterium mortiferum ATCC 9817] gi|229421569|gb|EEO36616.1| poly(a) polymerase [Fusobacterium mortiferum ATCC 9817] Length = 446 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 121/218 (55%), Gaps = 8/218 (3%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K + D ++ IL +L K K IVGG VRD+L+ L +D D T I ++++ IFS+ Sbjct: 2 KMYLDRNIKLILDILQKN-GKGYIVGGYVRDALLGLEPKDCDFVTDIEYEKLLNIFSEYS 60 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTIN 125 K I +G I+I +++I +R D + D + ++ FT++ D RRDFTIN Sbjct: 61 PKEIGKH--FGIIQIKIDGVHYEIAKMRQDKGIPKDRKEQEIEFTKNIYEDLKRRDFTIN 118 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ D + D+ ++T++F+G+ RI ED LRILR+FRF A K++D D Sbjct: 119 AIAFDGEKFYYGDSDSQKDIESKTLRFVGECKKRIEEDPLRILRYFRFLATKDLKHLDED 178 Query: 186 GLVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 V I K ++ L+ LS ERI E +K++ KN N + Sbjct: 179 --VEEISKYRELLQNLSVERIREEFDKIITGKNTYNIL 214 >gi|55820512|ref|YP_138954.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus LMG 18311] gi|55822400|ref|YP_140841.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus CNRZ1066] gi|73619886|sp|Q5M153|CCA_STRT1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619887|sp|Q5M5P1|CCA_STRT2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|55736497|gb|AAV60139.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus thermophilus LMG 18311] gi|55738385|gb|AAV62026.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus thermophilus CNRZ1066] Length = 402 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 106/188 (56%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + I +GT+ ++ Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIGIEHGTVLVLENGG 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R + D RRDFT+NA ++ +VID GL DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNENAEVIDKFNGLADL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R RF A + +I+ A L+ +S ER Sbjct: 142 DNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFEAMTSHAFLLEKISIERS 200 Query: 206 WSEINKLL 213 + E +KLL Sbjct: 201 FIEFDKLL 208 >gi|116627321|ref|YP_819940.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus LMD-9] gi|122268076|sp|Q03M28|CCA_STRTD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116100598|gb|ABJ65744.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus thermophilus LMD-9] Length = 402 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 106/188 (56%), Gaps = 7/188 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + I +GT+ ++ Sbjct: 26 EAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIGIEHGTVLVLENGG 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ D+ D R + V F R + D RRDFT+NA ++ +VID GL DL Sbjct: 82 EYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNENAEVIDKFNGLADL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 NR ++ +G A R ED LRI+R RF A + +I+ A L+ +S ER Sbjct: 142 DNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFEAMTSHAFLLEKISIERS 200 Query: 206 WSEINKLL 213 + E +KLL Sbjct: 201 FIEFDKLL 208 >gi|24379353|ref|NP_721308.1| tRNA CCA-pyrophosphorylase [Streptococcus mutans UA159] gi|73619869|sp|Q8DUL8|CCA_STRMU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|24377279|gb|AAN58614.1|AE014931_7 putative poly(A) polymerase [Streptococcus mutans UA159] Length = 401 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ + D+DIA++ P+ +IF +T + I +GT+ ++ Sbjct: 26 EAYFVGGSVRDVLLGHPIHDVDIASSSYPEETKKIFPRT----VDIGIEHGTVLVLENGH 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ DL D R ++V F R + D RRDFTINA D++ +ID GL DL Sbjct: 82 DYEVTTFRTEDLYVDYRRPSQVSFVRSLEEDLKRRDFTINAFALDEKANIIDKFNGLVDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + ++ +G+A R ED LRI+R RF A +I+ +A + L+ +S ER Sbjct: 142 EQKILRAVGNAAERFNEDALRIMRGLRFAAQLN-FDIEKKTFIAMREHAPLLEKISVERS 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLRA 210 >gi|290580645|ref|YP_003485037.1| putative poly(A) polymerase [Streptococcus mutans NN2025] gi|254997544|dbj|BAH88145.1| putative poly(A) polymerase [Streptococcus mutans NN2025] Length = 401 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 7/190 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ + D+DIA++ P+ +IF +T + I +GT+ ++ Sbjct: 26 EAYFVGGSVRDVLLGHPIHDVDIASSSYPEETKKIFPRT----VDIGIEHGTVLVLENGH 81 Query: 88 YFDITTLRS-DLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R+ DL D R ++V F R + D RRDFTINA D++ +ID GL DL Sbjct: 82 DYEVTTFRTEDLYVDYRRPSQVSFVRSLEEDLKRRDFTINAFALDEKANIIDKFNGLVDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + ++ +G+A R ED LRI+R RF A +I+ +A + L+ +S ER Sbjct: 142 EQKILRAVGNAAERFNEDALRIMRGLRFAAQLN-FDIEKKTFIAMREHAPLLEKISVERS 200 Query: 206 WSEINKLLEA 215 + E +KLL A Sbjct: 201 FIEFDKLLRA 210 >gi|291521782|emb|CBK80075.1| tRNA nucleotidyltransferase/poly(A) polymerase [Coprococcus catus GD/7] Length = 470 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 11/205 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL L++ ++ +VGG VRDSL+ +D DI T+ P++V +F+ T I T I + Sbjct: 26 ILKGLSEAGYEAYVVGGCVRDSLLGREPKDWDITTSARPEQVKAVFAHT----IDTGIEH 81 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K+ +++TT R D D R+ K V FT D RRDFTINA+ + + Sbjct: 82 GTVTVMIGKEGYEVTTYRIDGEYEDSRHPKEVQFTSQLLEDLKRRDFTINAMAYNPDRGI 141 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV-ASIKAK 194 +D G+ DL + I+ +G R ED LRI+R RF A G + DG +IK K Sbjct: 142 VDAFDGIGDLERKIIRCVGVPQERFDEDALRIMRAVRFSAQLG---FEIDGPTKEAIKEK 198 Query: 195 -KGLKILSSERIWSEINKLLEAKNP 218 + L+ +S+ERI E+ K+L + +P Sbjct: 199 VQQLENISAERIQMELVKILVSDHP 223 >gi|254779373|ref|YP_003057478.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori B38] gi|254001284|emb|CAX29261.1| Putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori B38] Length = 402 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +++L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 NTELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G + + N+ I+ +G+A R ED LRILR RF A G K I A Sbjct: 125 SPTKGLIDPFKGQSAIENQVIECVGEARLRFFEDALRILRALRFSATLGFK-IAPSTKRA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKN 211 >gi|108759921|ref|YP_631692.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Myxococcus xanthus DK 1622] gi|108463801|gb|ABF88986.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Myxococcus xanthus DK 1622] Length = 422 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 117/212 (55%), Gaps = 14/212 (6%) Query: 10 FHDSDL----INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 H++D+ +++++ L +VGG VRD + + +D D+AT+ LP V F Sbjct: 5 LHNADIPQPVLDVIARLRDLGHAVYLVGGCVRDMVRLVHPKDFDVATSALPQEVQGAF-- 62 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFT 123 KVIPT I +GT+ ++ + ++TT RS D + R + V F RD D RRDFT Sbjct: 63 --RKVIPTGIQHGTVTVLQNGTHVEVTTFRSEGDYLDGRRPSSVAFERDIVKDLSRRDFT 120 Query: 124 INAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INA+ Y +++D GG +DLR++ I+ +G A R ED LR LR RF A G + Sbjct: 121 INAMAYNPLDRELVDPFGGQSDLRSQLIRCVGSAQERFSEDGLRPLRAVRFAAVLGFA-L 179 Query: 183 DSDGLVASIKAKKGL-KILSSERIWSEINKLL 213 DS A+I A G+ + ++ ER+ E+ KLL Sbjct: 180 DS-ATRAAIPATLGVFRKVALERVREELVKLL 210 >gi|296502205|ref|YP_003663905.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis BMB171] gi|296323257|gb|ADH06185.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis BMB171] Length = 400 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 12 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVGLE 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++GK Sbjct: 68 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGK 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G +K K Sbjct: 128 MVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLEMKTK 179 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 180 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 239 Query: 247 SQ 248 +Q Sbjct: 240 TQ 241 >gi|206970696|ref|ZP_03231648.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH1134] gi|206734332|gb|EDZ51502.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH1134] Length = 397 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++GK Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGK 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G +K K Sbjct: 125 MVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLEMKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|30019684|ref|NP_831315.1| tRNA CCA-pyrophosphorylase [Bacillus cereus ATCC 14579] gi|218234591|ref|YP_002366317.1| tRNA CCA-pyrophosphorylase [Bacillus cereus B4264] gi|73619742|sp|Q81FP0|CCA_BACCR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|226702037|sp|B7HHU0|CCA_BACC4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|29895228|gb|AAP08516.1| Poly(A) polymerase [Bacillus cereus ATCC 14579] gi|218162548|gb|ACK62540.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus B4264] Length = 397 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++GK Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGK 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G +K K Sbjct: 125 MVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLEMKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|312869131|ref|ZP_07729305.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus oris PB013-T2-3] gi|311095377|gb|EFQ53647.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus oris PB013-T2-3] Length = 401 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 7/217 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L + + ++ VGG VRD+++ + DIDIAT+ P + +IF +T + T I + Sbjct: 16 VLQKIEQAGFEAYFVGGCVRDTILGDPIHDIDIATSAYPSEIKQIFKRT----VDTGIEH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ ++ TT R++ R V F R D RRDFTINAL + G+V Sbjct: 72 GTVMILDHGVGYETTTFRTESGYQDFRRPDNVTFVRSLAEDLQRRDFTINALALRENGEV 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GL DL+ R I+ +GD + R ED LR++R RF + + ID L Sbjct: 132 VDLFDGLGDLQRRLIRAVGDPNERFHEDALRMMRAVRFASKL-DFVIDRPTLEGINANAH 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 L ++ ERI E+ K+ +NP + G+++ Sbjct: 191 LLAKIAVERIRVELEKMFLGQNPPAGLKDFLETGLYQ 227 >gi|24215701|ref|NP_713182.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira interrogans serovar Lai str. 56601] gi|304570488|ref|YP_001035.2| poly A polymerase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196872|gb|AAN50200.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira interrogans serovar Lai str. 56601] Length = 487 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 19/214 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ R Sbjct: 40 DEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRI--- 96 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-----------KADSLRR 120 + + I+ R K +++T RS + D R K V +D+ + D+ RR Sbjct: 97 -IGRRFKIVHILFRGKVIEVSTFRS--LPDYRLGKAVEDQDYLIKRDNKFGTPQEDAARR 153 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F G Sbjct: 154 DFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKFAEILG- 212 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 NI+ A K K L+ SS R+ E NK+ Sbjct: 213 LNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIF 246 >gi|45600186|gb|AAS69672.1| polynucleotide adenyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 450 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 19/214 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ R Sbjct: 3 DEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRI--- 59 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-----------KADSLRR 120 + + I+ R K +++T RS + D R K V +D+ + D+ RR Sbjct: 60 -IGRRFKIVHILFRGKVIEVSTFRS--LPDYRLGKAVEDQDYLIKRDNKFGTPQEDAARR 116 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F G Sbjct: 117 DFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKFAEILG- 175 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 NI+ A K K L+ SS R+ E NK+ Sbjct: 176 LNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIF 209 >gi|307718754|ref|YP_003874286.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192] gi|306532479|gb|ADN02013.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192] Length = 421 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/194 (36%), Positives = 104/194 (53%), Gaps = 8/194 (4%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-I 99 + D D+AT P VM++F + VIPT I +GT+ I+ R ++ITT R + Sbjct: 3 LGTPPDDYDLATDAPPREVMKLFRR----VIPTGIQHGTVTIVFRDHCYEITTFRVETSY 58 Query: 100 TDGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAH 157 +DGR+ +V FT + D RRDFTINA+ D G+ D G +D++ R IK IG+ Sbjct: 59 SDGRHPDEVRFTTSLEEDLSRRDFTINAMALDPLTGEFFDPFDGYSDIKRRLIKAIGNPE 118 Query: 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 R ED LRILR RF +I+ + A + + L+ +S ERI E++K++EA Sbjct: 119 ERFEEDALRILRAIRFATQLS-FSIEQETYAAIGRHAEYLRRISWERIRDELSKIMEAVR 177 Query: 218 PLNAIVHMYNGGIF 231 P + M GI Sbjct: 178 PSQGFLRMEETGIL 191 >gi|317178996|dbj|BAJ56784.1| poly(A) polymerase [Helicobacter pylori F30] Length = 409 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 3/208 (1%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 7 EKELQELFEIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 66 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 67 ETGIKHGTITAFKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 126 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF G K + S A Sbjct: 127 SPTKGIIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSTTLGFKIVLSTK-EA 185 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 K LK LS ER+ SE+NKLL KN Sbjct: 186 VFACKDLLKHLSKERLQSELNKLLMGKN 213 >gi|168699746|ref|ZP_02732023.1| metal dependent phosphohydrolase [Gemmata obscuriglobus UQM 2246] Length = 410 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 103/400 (25%), Positives = 180/400 (45%), Gaps = 29/400 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY--- 88 GG VRD + L +D D+AT+ P+++ +F + R ++ +G +++I KK Sbjct: 15 AGGCVRDEFLGLVPEDYDVATSARPEQLRPLFRR-RNEI---GAHFGVVQVIGPKKADGT 70 Query: 89 ---FDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLN 143 ++ + RSD TDGR V + D+ RRDFT+N ++ D + +++D+VGG Sbjct: 71 WHTIEVASFRSDGAYTDGRRPDTVTFSTPEEDAQRRDFTVNGMFFDPVRNELLDFVGGRA 130 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL + ++ IGD R ED LRILR R +G ID A+ + + ++S+E Sbjct: 131 DLDAKVLRAIGDPFARFTEDKLRILRAARMATRFG-LAIDPTTRDAAQQMAPQVSVVSAE 189 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+ E+ KL N + + G+ + I ++ S D+ S + A ++ Sbjct: 190 RVAEELRKLFAHPNRTRGLALLRELGLIEPILPELTP-SADRASAALAALSEVGGRLPFP 248 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 L F V + + +A++ L + + + NQ L+ E+ + L K Sbjct: 249 LAFAVTLHAVGRAVTERVAERLKL-SNVESDRLCWLVA--NQSVLTDAEVMRPSKL---K 302 Query: 324 VMIAKLKI--FLALHYNNLTHQDTC-----FILQVLSDIIHWK-KPLFPLTGDDVVKYGI 375 ++ I LALH T F +VL D + P LTG D++ G+ Sbjct: 303 PLLVHPGIDDLLALHRALATATGGSLAPVEFCTRVLRDTPPEELNPPPVLTGADLIARGL 362 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 PG +L ++ + ++E H L+ +L+A Sbjct: 363 KPGPAFKRLLDAVREAQLEGR-AATKEQGHALVTRLLAEP 401 >gi|228990652|ref|ZP_04150617.1| CCA-adding enzyme [Bacillus pseudomycoides DSM 12442] gi|228769178|gb|EEM17776.1| CCA-adding enzyme [Bacillus pseudomycoides DSM 12442] Length = 384 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 21/207 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ ++ Sbjct: 7 EAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVIVVQEGI 62 Query: 88 YFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R SD R + V F R + D RRDFT+NA+ +++G +ID G + Sbjct: 63 PYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLFAGQEAI 122 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSDGLVASIKAKKGLK 198 R + I +G+A R ED LR++R RF + G ++ I+ G + L+ Sbjct: 123 RKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFFLEEQTKRAIEEYGHL--------LE 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHM 225 ++ ERI E KLL K +N + + Sbjct: 175 HIAIERITVEFEKLLTGKYCVNGLQQL 201 >gi|220917575|ref|YP_002492879.1| tRNA cytidylyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955429|gb|ACL65813.1| tRNA cytidylyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 436 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 15/306 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++++L L+ +S +VGGAVRD L++ + D D+AT P +VM +F +VIP Sbjct: 16 ILDVLRRLSAAGHRSWLVGGAVRDLLLHRPRAATDFDVATPATPRQVMALF----RRVIP 71 Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++TT R D + R A V F + +AD RRDFT+NA+ D Sbjct: 72 TGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPASVTFLAELEADLARRDFTMNAMAYD 131 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 Q D G D+ R I+ +G+ R ED LR +R RF A G + +D A Sbjct: 132 PLQADFRDPFDGRVDMSRRRIRAVGEPAARFGEDGLRAMRAVRFAAQLGYR-LDPATRAA 190 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 A + ++ +S ER+ E+++L+ A + A++ + G+ + + + L Sbjct: 191 IPGALEVVRKVSVERVAEELSRLVLAAHAGPALLLLRRTGLLGVVLPAIAALPLSAYRHA 250 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNFNQK 306 A V + LR L+ + + LPR + L+ + C + Sbjct: 251 --ASVVRHAPAEPALRLAALLHGVGPEEASKIVFGLRLPRRLSDEVGTLLRAYACPAARH 308 Query: 307 TLSIPE 312 ++P+ Sbjct: 309 PAALPD 314 >gi|226312087|ref|YP_002771981.1| tRNA CCA-adding enzyme [Brevibacillus brevis NBRC 100599] gi|226095035|dbj|BAH43477.1| probable tRNA CCA-adding enzyme [Brevibacillus brevis NBRC 100599] Length = 407 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 15/193 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD L+ V DIDI T P V+ +F +PT + +GT+ + + F++ Sbjct: 23 VGGCVRDWLLQRPVHDIDICTNAHPGDVILLFPDH----VPTGLKHGTVSVKVEGQLFEV 78 Query: 92 TTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 TT R T+G+Y A+V F + + D RRDFT+NA+ D+ + D GG D+ Sbjct: 79 TTFR----TEGKYEDYRRPAEVQFVSELRLDLERRDFTMNAMAMDRHQVLHDPFGGQEDI 134 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +R ++ +G R ED LR+LR RF + G I+ ++A + L ++ ERI Sbjct: 135 EHRLVRAVGIPLERFQEDALRLLRGVRFASQLG-FVIEDQTMLAMKQMAPLLAHIAVERI 193 Query: 206 WSEINKLLEAKNP 218 E+NK L++K P Sbjct: 194 REELNKTLDSKAP 206 >gi|228996750|ref|ZP_04156387.1| CCA-adding enzyme [Bacillus mycoides Rock3-17] gi|228763069|gb|EEM11979.1| CCA-adding enzyme [Bacillus mycoides Rock3-17] Length = 384 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 21/207 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ ++ Sbjct: 7 EAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVIVVQEGI 62 Query: 88 YFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R SD R + V F R + D RRDFT+NA+ +++G +ID G + Sbjct: 63 PYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLFAGQEAI 122 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSDGLVASIKAKKGLK 198 R + I +G+A R ED LR++R RF + G ++ I+ G + L+ Sbjct: 123 RKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFFLEEQTKRAIEEYGHL--------LE 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHM 225 ++ ERI E KLL K +N + + Sbjct: 175 HIAIERITVEFEKLLTGKYCVNGLQQL 201 >gi|229004419|ref|ZP_04162169.1| CCA-adding enzyme [Bacillus mycoides Rock1-4] gi|228756836|gb|EEM06131.1| CCA-adding enzyme [Bacillus mycoides Rock1-4] Length = 366 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 21/204 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ ++ Sbjct: 7 EAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVIVVQEGI 62 Query: 88 YFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT R SD R + V F R + D RRDFT+NA+ +++G +ID G + Sbjct: 63 PYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLFAGQEAI 122 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSDGLVASIKAKKGLK 198 R + I +G+A R ED LR++R RF + G ++ I+ G + L+ Sbjct: 123 RKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFFLEEQTKRAIEEYGHL--------LE 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAI 222 ++ ERI E KLL K +N + Sbjct: 175 HIAIERITVEFEKLLTGKYCVNGL 198 >gi|301053173|ref|YP_003791384.1| poly(A) polymerase [Bacillus anthracis CI] gi|300375342|gb|ADK04246.1| poly(A) polymerase [Bacillus cereus biovar anthracis str. CI] Length = 397 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + A+ + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHLPYLQMSEEKLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|323489708|ref|ZP_08094935.1| CCA-adding enzyme [Planococcus donghaensis MPA1U2] gi|323396839|gb|EGA89658.1| CCA-adding enzyme [Planococcus donghaensis MPA1U2] Length = 377 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I ++ L ++ IVGGAVRD L+ + DID+AT+ LP +V +F++T + T I Sbjct: 5 IKVIHTLKAAGFEAYIVGGAVRDLLLGKAPHDIDVATSALPQQVKALFART----VDTGI 60 Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++TT R++ +D R V F + D RRDFTINA+ + Sbjct: 61 DHGTVLVLLDGEGIEVTTFRTESSYSDNRRPDSVEFVLSLEEDLRRRDFTINAMAMTEDL 120 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID GG DL+N+ I+ +GD R ED LR+LR RF + ID L++ + Sbjct: 121 DIIDPFGGKEDLKNKVIRAVGDPDERFEEDALRMLRAIRFSGQL-DFIIDMKTLLSIRRH 179 Query: 194 KKGLKILSSERIWSEINKLL 213 + ++ ++ ER+ SEI+K+ Sbjct: 180 ARLIRFIAVERLKSEIDKIF 199 >gi|160933669|ref|ZP_02081057.1| hypothetical protein CLOLEP_02530 [Clostridium leptum DSM 753] gi|156867546|gb|EDO60918.1| hypothetical protein CLOLEP_02530 [Clostridium leptum DSM 753] Length = 422 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 105/382 (27%), Positives = 171/382 (44%), Gaps = 42/382 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD L+ +D D A + LPD + + V T + +GT+ + +I Sbjct: 54 VGGCVRDMLLGKKPEDYDFAVSALPDETKQALNGV--PVFDTGLRHGTVTAVVDGHAAEI 111 Query: 92 TTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ +D R KV FTR D RRDFT+NA+ + ++D GG DL+NR Sbjct: 112 TTYRTESGYSDFRRPDKVGFTRSLSEDLSRRDFTVNAMAFHPERGLVDCFGGKEDLKNRI 171 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 +K +G+ R ED LRILR RF + E I+ D A +K ++ LK ++ ER+ +E Sbjct: 172 LKCVGEPERRFREDALRILRCLRFSSAL-EFAIEEDTRQALLKHRELLKKIAPERLQAEF 230 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 +KL I+ + + E +L V ++ L + Q A Sbjct: 231 SKL---------ILGEWAEQVLTE-YLPVFQVFLPEAGQRRSA----------------- 263 Query: 270 ISWQDKKSILSMAKKFS--LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 +SW + L +A FS P E L +T++ E + L D+ Sbjct: 264 LSWLPAEKKLRLAGVFSGCTPDETARALERLRYDGKTIRTVTTLERYRQVPLETDRRQAR 323 Query: 328 KLKIFLALHYNN--LTHQDTCFILQVLSDIIHWKKPLFPLT-----GDDVVKYGIPPGKK 380 KL L + L ++ +L+ L ++I + L+ G+D+++ G P GK Sbjct: 324 KLVFLLGMETAEELLRFREEPELLKWL-EVIRGQGLCCSLSQLSVNGEDLIRLGYPEGKG 382 Query: 381 VGNILVHCKQEWINSSFQLSQE 402 +G L Q ++ + + +E Sbjct: 383 IGKALNRLLQLVLDETLENQKE 404 >gi|269839869|ref|YP_003324562.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermobaculum terrenum ATCC BAA-798] gi|269791599|gb|ACZ43739.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermobaculum terrenum ATCC BAA-798] Length = 484 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 4/213 (1%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYFD 90 VGG VRDSL+ VQ++D AT+ P+ + R+ + R + T +GTI I + Sbjct: 41 VGGCVRDSLLGKEVQELDFATSAHPEEIKRLLAPLRPDSVYTVGERFGTIGAIFGPYRVE 100 Query: 91 ITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 ITT R + + D R +V F + D RRDFT+NA+ D G++ID GG+ DL ++ Sbjct: 101 ITTYRGEWYSPDSRKPEVTFGISLEEDLSRRDFTVNAIAMDIPSGRLIDPFGGVEDLHSK 160 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +GD R +D LR++R RF A+ G K I+ A + + +S ER+ E Sbjct: 161 VIRAVGDPDARFRDDPLRLMRAVRFAANLGFK-IEPRTAEAIRRHAAQICKISIERVRDE 219 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + ++L P AI + + G+ + I +V E+ Sbjct: 220 LTRMLTGPAPDVAIAALVDLGLMQYIVPEVVEL 252 >gi|58337270|ref|YP_193855.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus NCFM] gi|227903855|ref|ZP_04021660.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus ATCC 4796] gi|73619782|sp|Q5FKF0|CCA_LACAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|58254587|gb|AAV42824.1| tRNA nucleotidyltransferase, polyA polymerase polyA [Lactobacillus acidophilus NCFM] gi|227868742|gb|EEJ76163.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus ATCC 4796] Length = 399 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 10/199 (5%) Query: 19 LSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L + ED ++ VGG+VRD L++ V DIDI T+ P+ V +F K+ I T I Sbjct: 15 MPVLQRLEDAGFEAYFVGGSVRDVLLDRHVHDIDITTSAYPEEVKELFEKS----IDTGI 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D +G Sbjct: 71 KHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDIRG 130 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID G+ DL+ R I+ +G+ R ED LR++R RF + E ++ A Sbjct: 131 QIIDLFNGVEDLKKRVIRAVGNPETRFHEDALRMMRAVRFMSQL-EFKLEEKTERAIKDN 189 Query: 194 KKGLKILSSERIWSEINKL 212 + LK +S ERI E K+ Sbjct: 190 HELLKKISIERIREEFVKM 208 >gi|320108593|ref|YP_004184183.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Terriglobus saanensis SP1PR4] gi|319927114|gb|ADV84189.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Terriglobus saanensis SP1PR4] Length = 457 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 11/215 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK--KYF 89 VGG VRD LM + +D D+AT PD V+++F +T P +G + I+C Sbjct: 35 VGGCVRDLLMGHAPKDYDVATNACPDAVIKLFRRT----FPVGAHFGVV-IVCDNDGSQT 89 Query: 90 DITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLR 146 ++ T R+D DGR +V + + D LRRDFTIN + D G+V+D+VGG +DL Sbjct: 90 EVATFRADGAYEDGRRPTEVRYADTPQVDVLRRDFTINGMMMDPVTGEVLDFVGGRDDLE 149 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + ++ IG R ED LR+LR RF A +G ++ L A + +S+ER+ Sbjct: 150 AKILRAIGTPQVRFEEDKLRMLRAVRFAARFG-FTLEPRTLQAIQAQAPTINQVSNERVR 208 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E+ ++L + A + G+ +E+ +V ++ Sbjct: 209 DELTRMLTEGHARRAFELLDETGLLREVLPEVAKM 243 >gi|42780739|ref|NP_977986.1| tRNA CCA-pyrophosphorylase [Bacillus cereus ATCC 10987] gi|73619740|sp|Q73AV7|CCA_BACC1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|42736659|gb|AAS40594.1| polyA polymerase [Bacillus cereus ATCC 10987] Length = 397 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + A+ + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|257791803|ref|YP_003182409.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Eggerthella lenta DSM 2243] gi|257475700|gb|ACV56020.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Eggerthella lenta DSM 2243] Length = 465 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 71/198 (35%), Positives = 103/198 (52%), Gaps = 3/198 (1%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRD+L+ DIDIAT V R+F Y+ T ++GT+ +I ++ Sbjct: 32 ETWIVGGYVRDALLGRPSSDIDIATQAHWQDVQRVFEGQGYRTHETGTAHGTLTVIVDEQ 91 Query: 88 YFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++TT RSD D R+ +V F R D RRDFT+NAL + D GG DL Sbjct: 92 ALEVTTYRSDGAYADARHPNQVSFVRTIAEDLARRDFTMNALAYHPARGLFDPYGGHADL 151 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + I+ +GD R ED LR+LR RF A G ID + + K L +S++RI Sbjct: 152 EAQIIRAVGDPDRRFSEDALRMLRACRFAAELGFA-IDPNTFEGMLANKGLLPRISTQRI 210 Query: 206 WSEINKLLEAKNPLNAIV 223 E+ +LL ++ A+ Sbjct: 211 THELQRLLLGEHAGRALT 228 >gi|238916042|ref|YP_002929559.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium eligens ATCC 27750] gi|238871402|gb|ACR71112.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium eligens ATCC 27750] Length = 417 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 8/221 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 NI+ + + K+ VGG +RDS++ + D DI T+ +P ++ F +T + T I+ Sbjct: 15 NIIHTIEEHGFKAYAVGGCIRDSILGRNPDDWDITTSAVPSQIKTFFKRT----VDTGIA 70 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSL-RRDFTINALYADQQGK 134 +GT+ I+ K +++TT R D DGR+ K V D D L RRDFTINA+ + Sbjct: 71 HGTVTIMIDKTGYEVTTYRIDGEYEDGRHPKSVEFSDRLVDDLCRRDFTINAMAYNDTDG 130 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GL+DL + I+ +G+ R ED LR++R RF A G ID A K Sbjct: 131 FVDEFNGLDDLDAKIIRCVGEPELRFTEDALRMMRAIRFSAQLG-FTIDEATWNAIKKLA 189 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +S ER+ E+ K L + +P + + G+F+ I Sbjct: 190 PSISKISMERVHVELGKTLMSAHP-DYVAQYSEAGLFEPIL 229 >gi|269798577|ref|YP_003312477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Veillonella parvula DSM 2008] gi|269095206|gb|ACZ25197.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Veillonella parvula DSM 2008] Length = 472 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 113/202 (55%), Gaps = 10/202 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI-- 75 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + + T + Sbjct: 8 ILTILEEAGHEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRS--HDIQTTDLVG 65 Query: 76 -SYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 S+G + K ++I T R++ R ++ + + D LRRDFT+N + ++ Sbjct: 66 KSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAMNRY 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI- 191 G+VID VGG D++++T++ IG+A R ED LR+ R RF A + S L+ ++ Sbjct: 126 GEVIDLVGGRRDIKHKTLRTIGNAQERFEEDALRLFRACRFVAKL--DFLPSKELLEAMP 183 Query: 192 KAKKGLKILSSERIWSEINKLL 213 KA + LS ER+ SEIN+L+ Sbjct: 184 KAFHRVPGLSLERVRSEINRLM 205 >gi|47565999|ref|ZP_00237037.1| polyA polymerase [Bacillus cereus G9241] gi|47556916|gb|EAL15246.1| polyA polymerase [Bacillus cereus G9241] Length = 397 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++GK Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGK 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIETYG 183 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQ 248 + L+ ++ ERI E KLL + + + +F + +L + E L + +Q Sbjct: 184 QLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKATQ 238 >gi|319651319|ref|ZP_08005449.1| hypothetical protein HMPREF1013_02061 [Bacillus sp. 2_A_57_CT2] gi|317397099|gb|EFV77807.1| hypothetical protein HMPREF1013_02061 [Bacillus sp. 2_A_57_CT2] Length = 402 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 105/391 (26%), Positives = 183/391 (46%), Gaps = 37/391 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD ++ + D+DIAT+ P+ V IF +T + I +GT+ ++ ++I Sbjct: 25 VGGSVRDFILGKEIADVDIATSAAPEEVKTIFPRT----LDVGIEHGTVVVLHNGIPYEI 80 Query: 92 TTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT RS+ + R +KV F R K D RRDFT+NA+ D++G +ID G + + Sbjct: 81 TTFRSEAEYLDFRRPSKVQFIRSLKEDLKRRDFTMNAIAMDKKGHLIDPFNGRGAIEEKR 140 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNI-DSDGLVASIKAKKGLKILSSERI 205 I +G R ED LR++R RF++ EKN D+ +A + L+ ++ ER Sbjct: 141 ICTVGQPAERFTEDALRMMRAVRFYSQLAFEIEKNTYDALASLAHL-----LENIAVERK 195 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 +E KLL + + A++ + G+ K +L +L Q E E +D + Sbjct: 196 LAEFEKLLAGTSRMKALMIIGETGLSK--YLPNMSGFQKELMQA-EDYNAAELTVDEMWA 252 Query: 266 FIVLISWQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 F+ I D+ + K + LP ++I+ L N + ++ + L Y G Sbjct: 253 FLACIFNLDESQAEAFFKSWKLPVKKIKKILA--INKWIRYRAKNMWDAYSL-YQAGCVS 309 Query: 325 MIAKLKIFLALHYNN------LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377 + A+ + + +H ++ L + C ++ SD+ LTGD+++ +G PP Sbjct: 310 LNAERVLNVIVHEDSSRGTDILVSKYNCLPIKERSDL--------QLTGDNLMDWFGKPP 361 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G + IL ++ + S E + L Sbjct: 362 GPWIKAILEKTEEAVLRGELNNSNESIREWL 392 >gi|297563764|ref|YP_003682738.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848212|gb|ADH70232.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 499 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 122/259 (47%), Gaps = 19/259 (7%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ D+D+ T +P R++ + V I +GT+ + + Sbjct: 61 ALVGGPVRDALLGRPANDVDLTTDAVPQRILELVDGWADSVWTVGIDFGTVGLRKKGLQL 120 Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT RS+ + R +V + D D LRRDFT+NA+ G + +D GGL DLR Sbjct: 121 EVTTYRSESYSPKSRKPEVAYGTDIHDDLLRRDFTVNAMAVRLPGLEFVDPFGGLADLRA 180 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + ++ G +D LRI+R RF A G A A + L I+S+ER+ Sbjct: 181 KVLRTPGRPEDSFSDDPLRIMRAVRFAAQLGFTLAPEVAEAARDMADR-LSIVSAERVRD 239 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVIE 251 E+ KL+ + +P I M + GI + + DV E SL L Q IE Sbjct: 240 ELTKLMLSPDPHRGIELMVDLGIARYVLPEIPKLRLEIDEHHRHKDVYEHSLTVLDQAIE 299 Query: 252 AEQVFEWKIDSLLRFIVLI 270 E+ + D +LR L+ Sbjct: 300 LEEKRGHEPDLVLRLAALL 318 >gi|259503406|ref|ZP_05746308.1| polyA polymerase [Lactobacillus antri DSM 16041] gi|259168651|gb|EEW53146.1| polyA polymerase [Lactobacillus antri DSM 16041] Length = 401 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 9/208 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRD+++ + DIDIAT+ P + RIF +T + T I +GT+ I+ Sbjct: 26 EAYFVGGCVRDTILGDPIHDIDIATSAYPSEIKRIFKRT----VDTGIEHGTVMILDHGI 81 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ TT R++ R V F R D RRDFTINAL + G+V+D GL DL Sbjct: 82 GYETTTFRTESGYQDFRRPDNVTFVRSLAEDLQRRDFTINALALRENGEVVDLFDGLGDL 141 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 R I+ +GD + R ED LR++R RF + + ID IKA L ++ ER Sbjct: 142 HRRLIRAVGDPNERFHEDALRMMRAVRFASKL-DFVIDQP-TRTGIKANAHLLSKIAVER 199 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFK 232 E+ K+ +NP + G+++ Sbjct: 200 TRVELEKMFLGQNPPAGLKDFLETGLYR 227 >gi|73619752|sp|Q7SIB1|CCA_GEOSE RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|27573947|pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme In Complex With Ctp gi|27573948|pdb|1MIY|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme In Complex With Ctp Length = 404 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 15/223 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + + VGGAVRD L+ + D+DIAT+ LP+ VM IF KT I Sbjct: 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPKT----IDV 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINAL 127 +GT+ ++ + K +++TT + TDG Y V F R + D RRDFT+NA+ Sbjct: 63 GSKHGTVVVVHKGKAYEVTTFK----TDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAI 118 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D+ G +ID GG +R R I+ +G+A R ED LR++R RF + G + D Sbjct: 119 AMDEYGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELG-FALAPDTE 177 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A ++ L +S ER+ E+ KLL A+ + G+ Sbjct: 178 QAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGL 220 >gi|298736336|ref|YP_003728862.1| polynucleotide adenylyltransferase PapS [Helicobacter pylori B8] gi|298355526|emb|CBI66398.1| Polynucleotide adenylyltransferase(PapS) [Helicobacter pylori B8] Length = 392 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 3/189 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD LM ++ +D D+ + L + + K ++V+ T I +GTI + + ++ Sbjct: 14 LVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHGTITALKNHQSYE 73 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G + + N+ Sbjct: 74 ITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAYSPTKGLIDPFKGRSAIENQ 133 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +G A R ED LRILR RF A G K I A K LK LS ER+ SE Sbjct: 134 MIECVGGARLRFFEDALRILRALRFSATLGFK-IAPSTKRAVFACKDLLKHLSKERLQSE 192 Query: 209 INKLLEAKN 217 +NKLL KN Sbjct: 193 LNKLLMGKN 201 >gi|116629563|ref|YP_814735.1| tRNA CCA-pyrophosphorylase [Lactobacillus gasseri ATCC 33323] gi|238853078|ref|ZP_04643470.1| tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus gasseri 202-4] gi|282852058|ref|ZP_06261416.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus gasseri 224-1] gi|311110793|ref|ZP_07712190.1| poly A polymerase [Lactobacillus gasseri MV-22] gi|122273499|sp|Q043S5|CCA_LACGA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116095145|gb|ABJ60297.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus gasseri ATCC 33323] gi|238834326|gb|EEQ26571.1| tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus gasseri 202-4] gi|282556818|gb|EFB62422.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus gasseri 224-1] gi|311065947|gb|EFQ46287.1| poly A polymerase [Lactobacillus gasseri MV-22] Length = 398 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 7/219 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T I + Sbjct: 16 VLKRINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL G V Sbjct: 72 GTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMGVDGNV 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A + Sbjct: 132 IDHFDGLGDLDKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETERAISDNHE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L +S ERI E K+ A A + G+ +E+ Sbjct: 191 LLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV 229 >gi|313608008|gb|EFR84108.1| CCA-adding enzyme [Listeria monocytogenes FSL F2-208] Length = 390 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 115/209 (55%), Gaps = 7/209 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF +T Y T I Sbjct: 6 LPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIF-QTSYD---TGI 61 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ Sbjct: 62 AHGTITVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEHF 121 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 122 TLHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALESQ 180 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAI 222 + L+ S ERI E K+++ K P AI Sbjct: 181 IELLQHTSVERITVEWIKMMKGKAPKRAI 209 >gi|197294745|ref|YP_001799286.1| Poly(A) polymerase [Candidatus Phytoplasma australiense] gi|171854072|emb|CAM12045.1| Poly(A) polymerase [Candidatus Phytoplasma australiense] Length = 412 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 10/199 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ + + ++ IVGGAVRD L+N+ QD+DI T +P + IF + Sbjct: 16 IIQIFKQKGFEAFIVGGAVRDYLLNIPFNQDVDITTNAVPQDINAIFQSQK------RAY 69 Query: 77 YGTIKIICRKKYFDITTLRS-DLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 YG IKII ++ F+ITT R D+ + R+ K+VF ++ K D +RRDFTINAL D++G+ Sbjct: 70 YGCIKIIFEEESFEITTYREEDIYLNHRHPNKIVFIQEVKKDVIRRDFTINALLMDEKGQ 129 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D+ G +DL + ++ I + +D LRI+R F F A + I+ +A K Sbjct: 130 IFDWTEGKSDLTKKILRTIQNPFISFEKDALRIMRAFYFQAKLNFQ-IEKQTQIALTKHS 188 Query: 195 KGLKILSSERIWSEINKLL 213 L +SS RI+ + K++ Sbjct: 189 HLLTQISSSRIYEYLQKII 207 >gi|317177458|dbj|BAJ55247.1| poly(A) polymerase [Helicobacter pylori F16] Length = 407 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 3/189 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD L+ ++ +D D+ + L + + K ++V+ T I +GTI + + ++ Sbjct: 24 LVGGCVRDCLIGITPKDYDLTSNALVNESKDLLLKHHFRVLETGIKHGTITALKNNQSYE 83 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G N ++N+ Sbjct: 84 ITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAYSPTKGIIDPFKGQNAIKNQ 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +G+A R ED LRILR RF A G K + S A K LK LS ER+ +E Sbjct: 144 VIECVGEARLRFFEDALRILRALRFSATLGFKIVLSTK-EAIFACKDLLKHLSKERLQNE 202 Query: 209 INKLLEAKN 217 +NKLL KN Sbjct: 203 LNKLLMGKN 211 >gi|261367214|ref|ZP_05980097.1| poly(A) polymerase [Subdoligranulum variabile DSM 15176] gi|282570813|gb|EFB76348.1| poly(A) polymerase [Subdoligranulum variabile DSM 15176] Length = 456 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 7/206 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D + +L L+ + +VGG VRDSL+ D DI T+ PD++ +F+ ++I T Sbjct: 11 DAMWLLQTLHDAGYSAYVVGGCVRDSLLGRRPGDWDICTSARPDQLRALFADQ--QLILT 68 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINAL-YAD 130 +GT+ ++ ++ITT R D D R+ KV F + D RRDFTINA+ YA Sbjct: 69 GEKHGTVGVVLHGSPYEITTYRLDGTYRDHRHPDKVQFVSELAEDLARRDFTINAMAYAP 128 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +G VID GG DL I+ +GD R ED LRILR RF A + +D A+ Sbjct: 129 GEG-VIDLCGGRKDLAAGIIRCVGDPEARFAEDALRILRALRFAARL-DFALDPATEAAA 186 Query: 191 IKAKKGLKILSSERIWSEINKLLEAK 216 +A+ L+ +S+ERI++E++ LL A+ Sbjct: 187 REARDSLQAVSAERIYTELDGLLMAQ 212 >gi|282849854|ref|ZP_06259238.1| HD domain protein [Veillonella parvula ATCC 17745] gi|282580791|gb|EFB86190.1| HD domain protein [Veillonella parvula ATCC 17745] Length = 472 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 109/203 (53%), Gaps = 12/203 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSIS 76 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + S Sbjct: 8 ILTVLEEAGHEAYIIGGAVRDVLMHQKPHDFDIVTSARPDTVIEVLRGHDIQTTDLVGKS 67 Query: 77 YGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +G + K ++I T R++ R ++ + + D LRRDFT+N + ++ G+ Sbjct: 68 FGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAMNRYGE 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGLVAS 190 VID VGG D++++T++ IG+A R ED LR+ R RF A +D D L A Sbjct: 128 VIDLVGGRRDIKHKTLRTIGNAQKRFEEDALRLFRACRFVA-----KLDFLPSKDLLEAM 182 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 KA + LS ER+ +EIN+L+ Sbjct: 183 PKAFHRVPGLSLERVRNEINRLM 205 >gi|324325652|gb|ADY20912.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 397 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 125/242 (51%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++GK Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGK 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|302390046|ref|YP_003825867.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermosediminibacter oceani DSM 16646] gi|302200674|gb|ADL08244.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermosediminibacter oceani DSM 16646] Length = 449 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 10/220 (4%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 LN ++ +VGGA+RD ++ D DIAT LP+R+ IF+ IP ++GT+ Sbjct: 18 LNTRGHQAFVVGGALRDIILGRESPDYDIATDALPERIASIFA----DAIPYG-NFGTML 72 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVG 140 +I ++T R D GR F D RRDFTIN++ D G+ ID G Sbjct: 73 LIRGNTKIEVTPFRDD--APGRKPHYTFGGTIYTDLARRDFTINSMAYDPITGQFIDPFG 130 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 GLNDL+ RTI+ G + R+ ED LR LR RF A G I+ + + L + Sbjct: 131 GLNDLKARTIRCTG-STKRVWEDPLRALRAARFQAQLGFA-IEPSTMYSLKAYASMLDTI 188 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 S ERI E++KL+ + +P + +V + G+ I ++ E Sbjct: 189 SRERIRDELSKLITSDHPFDGLVTLVVTGLMNYIIPELME 228 >gi|229544023|ref|ZP_04433082.1| tRNA cytidylyltransferase [Bacillus coagulans 36D1] gi|229325162|gb|EEN90838.1| tRNA cytidylyltransferase [Bacillus coagulans 36D1] Length = 400 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/330 (26%), Positives = 155/330 (46%), Gaps = 22/330 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I+ L ++ VGG++RDSL+ V D+DIAT+ P+ V +F T + I Sbjct: 9 LPIIRTLEDAGFQAFFVGGSIRDSLLGRPVHDVDIATSAKPEEVKALFKHT----VDIGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V + D RRDFT+NA+ D+ G Sbjct: 65 EHGTVLVLYKGNQYEITTFRTESAYKDYRRPESVEYVDSLLEDLKRRDFTMNAMAMDKNG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 K+ID G +R + I+ +G R ED LR++R RF + G I+ G +IK Sbjct: 125 KLIDPFRGSEAIRMKRIETVGSPEERFREDALRMMRAARFTSQLG-FGIEP-GTKQAIKR 182 Query: 194 KKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L + ++ ERI E KLLE ++P A+ + G+ FL + +Q+ A Sbjct: 183 HAPLIRHIAVERITQEFIKLLEGEHPYEALQLLQETGLLG--FLPG---LCGREAQLFSA 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI---SFFNCNFNQKTLS 309 ++ ++ L++ + + + +K+ LP E R ++ SFF +K Sbjct: 238 LHPVLNELSEQQLWVYLVAAANPEDANAFLRKWKLPNEKRKAIVRTLSFFRMRAGRKWDP 297 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 + + Y G++ + +F A N Sbjct: 298 L-----MLYDAGEQTALDAEAVFCAFRREN 322 >gi|325845057|ref|ZP_08168373.1| tRNA adenylyltransferase [Turicibacter sp. HGF1] gi|325488933|gb|EGC91326.1| tRNA adenylyltransferase [Turicibacter sp. HGF1] Length = 386 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 9/197 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRD L+ + DIDI T+ PD V+ +F KT I T I +GT+ ++ Sbjct: 20 EAYFVGGMVRDRLLGRDIYDIDITTSAKPDVVIGLFEKT----IQTGIKHGTVTVMIEGI 75 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++TT R + + R ++V FT D RRDFT+NA+ G + D GL DL Sbjct: 76 PVEVTTFRVEEAYEDFRRPSEVRFTSSLIEDLKRRDFTVNAIAESIDGTLEDPFHGLKDL 135 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 NR IK +G+A R +ED LR+LR RF + G E ++ + + A ++ +S ER Sbjct: 136 SNRQIKAVGEAKERFIEDPLRMLRGLRFMSKLGFELEDETSKAIGEVGAL--IEHISKER 193 Query: 205 IWSEINKLLEAKNPLNA 221 I EI ++ + L A Sbjct: 194 IKKEIEGMVSGEFSLKA 210 >gi|28493767|ref|NP_787928.1| poly(A) polymerase [Tropheryma whipplei str. Twist] gi|28476809|gb|AAO44897.1| poly(A) polymerase [Tropheryma whipplei str. Twist] Length = 484 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 127/283 (44%), Gaps = 20/283 (7%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K H+ ++ + + + +VGG VRD ++ V D+D AT P +R+ Sbjct: 21 QKLSHEDSVLALTAAFCAKNYELALVGGPVRDCFLDRPVVDLDFATNATPQETLRLVKPI 80 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125 T YGT+ + + +ITT RSD + R KV F + D +RRDFT+N Sbjct: 81 SSGCWTTGARYGTVSARVKGRVVEITTYRSDNYSANTRKPKVSFGGSLEEDLIRRDFTVN 140 Query: 126 AL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + G+++D GL D+ N+ + +D LR+LR R + G K I Sbjct: 141 AMAFRVPSGQLVDISSGLQDIANKRLATPIKPELSFADDPLRMLRAARLSSQLGFK-ISE 199 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-------- 236 + L+A K LKI+S+ER+ E KLL +P ++ + N G+ Sbjct: 200 NSLLAMKDCAKRLKIVSAERVRGEFEKLLCCADPTGSLRVLVNTGLINHFLPEISALRLE 259 Query: 237 --------DVQEISLDQLSQVIEAEQV-FEWKIDSLLRFIVLI 270 DV E SL L Q I+ EQ F D +LR L+ Sbjct: 260 IDEHFHHKDVYEHSLIVLRQAIKLEQERFRNGPDLVLRLAALM 302 >gi|28572951|ref|NP_789731.1| RNA nucleotidyltransferase [Tropheryma whipplei TW08/27] gi|28411084|emb|CAD67469.1| putative RNA nucleotidyltransferase [Tropheryma whipplei TW08/27] Length = 478 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 127/283 (44%), Gaps = 20/283 (7%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K H+ ++ + + + +VGG VRD ++ V D+D AT P +R+ Sbjct: 15 QKLSHEDSVLALTAAFCAKNYELALVGGPVRDCFLDRPVVDLDFATNATPQETLRLVKPI 74 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTIN 125 T YGT+ + + +ITT RSD + R KV F + D +RRDFT+N Sbjct: 75 SSGCWTTGARYGTVSARVKGRVVEITTYRSDNYSANTRKPKVSFGGSLEEDLIRRDFTVN 134 Query: 126 AL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + G+++D GL D+ N+ + +D LR+LR R + G K I Sbjct: 135 AMAFRVPSGQLVDISSGLQDIANKRLATPIKPELSFADDPLRMLRAARLSSQLGFK-ISE 193 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-------- 236 + L+A K LKI+S+ER+ E KLL +P ++ + N G+ Sbjct: 194 NSLLAMKDCAKRLKIVSAERVRGEFEKLLCCADPTGSLRVLVNTGLINHFLPEISALRLE 253 Query: 237 --------DVQEISLDQLSQVIEAEQV-FEWKIDSLLRFIVLI 270 DV E SL L Q I+ EQ F D +LR L+ Sbjct: 254 IDEHFHHKDVYEHSLIVLRQAIKLEQERFRNGPDLVLRLAALM 296 >gi|315453290|ref|YP_004073560.1| poly(A) polymerase [Helicobacter felis ATCC 49179] gi|315132342|emb|CBY82970.1| poly(A) polymerase [Helicobacter felis ATCC 49179] Length = 409 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 105/400 (26%), Positives = 189/400 (47%), Gaps = 38/400 (9%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 S ++ K S L+ + +++ +G ++CIVGG+VRD L+ +D D+A++ PD++ Sbjct: 6 TSFLRLKRALPSSLLTLHAMIEQGGYQACIVGGSVRDLLLGKEPKDYDLASSATPDQLKA 65 Query: 62 IFSKTR-YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSL 118 + K+I ++GT+ + F+ITT R + D R+ + F + ++D Sbjct: 66 LLEGMEGIKIIELGRAFGTLGVGFEGWLFEITTFRQEGEYRDHRHPSALKFVKSIESDLA 125 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFTINAL Q ++D GL DL+ ++ +GD R+ ED LRILR RF + G Sbjct: 126 RRDFTINALALHPQKGLLDLYSGLEDLKKGVLRLVGDPTLRLQEDALRILRALRFSSVLG 185 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL-----EAKNPLNAIVHMYNGGIFKE 233 +++ A + L+ ++ ERI E KLL + P +++ K Sbjct: 186 -FSLEEVTQKALWEQAPLLEHIAKERICMEFFKLLLGDFVRSCAPFQSLLEKTLKARLKP 244 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK--KSILSMAKKFSL-PRE 290 + ++ L+ ++++ Q W +L F + + K +S+ + F L P+E Sbjct: 245 LE-GLENTPLNLRARLLYLAQ--SWDTQTLRDFCTRLKFSKKLTQSLHKLHAHFPLEPQE 301 Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKL--FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 I ++L + E++ L FY D V+ A+LK L ++ H+ + Sbjct: 302 PSRLWI-----KTQLQSLYLGELRALLGFYQTQDPVLSARLKSEL----KDILHKREAYA 352 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 L+ L+ + G D+++ G G +VG +L C Sbjct: 353 LRHLA-----------IKGTDLLELGF-QGTQVGALLKAC 380 >gi|229829762|ref|ZP_04455831.1| hypothetical protein GCWU000342_01859 [Shuttleworthia satelles DSM 14600] gi|229791751|gb|EEP27865.1| hypothetical protein GCWU000342_01859 [Shuttleworthia satelles DSM 14600] Length = 461 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 7/204 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L ++ VGG VRDS++ D DI ++ P + +FS T I T I Sbjct: 17 QIIHTLEAAGHEAYAVGGCVRDSVLGRIPDDWDITSSACPREIKALFSHT----IDTGIQ 72 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ +++TT R D DGR+ + V +T D RRDFTINA+ Sbjct: 73 HGTVTVMLDHIGYELTTYRVDGEYLDGRHPRTVRYTPSLTEDLKRRDFTINAMAYHPDRG 132 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G+ DL+ + ++ +GD H R ED LR+LR RF A G +D+D A Sbjct: 133 LVDEFDGIGDLKRKLVRCVGDPHQRFTEDALRMLRAVRFAAQLG-FGLDADTASAIRDLA 191 Query: 195 KGLKILSSERIWSEINKLLEAKNP 218 + LK +S+ERI E+ K + + +P Sbjct: 192 ENLKKVSAERIRVELMKTICSPHP 215 >gi|197122792|ref|YP_002134743.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. K] gi|196172641|gb|ACG73614.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. K] Length = 436 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 113/208 (54%), Gaps = 10/208 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++++L L+ +S +VGGAVRD L++ + D D+AT P +VM +F +VIP Sbjct: 16 ILDVLRRLSAAGHRSWLVGGAVRDLLLHRPRAATDFDVATPATPRQVMALF----RRVIP 71 Query: 73 TSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++TT R D + R A V F + +AD RRDFT+NA+ D Sbjct: 72 TGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPASVTFLAELEADLARRDFTMNAMAYD 131 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 Q D G D+ R I+ +G+ R ED LR +R RF A G + +D A Sbjct: 132 PLQADFRDPFDGRVDMSRRRIRAVGEPAARFGEDGLRAMRAVRFAAQLGYR-LDPATRAA 190 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKN 217 A + ++ +S ER+ E+++L+ A + Sbjct: 191 IPGALEVVRKVSVERVAEELSRLVLAAH 218 >gi|325571124|ref|ZP_08146696.1| poly A polymerase [Enterococcus casseliflavus ATCC 12755] gi|325156209|gb|EGC68395.1| poly A polymerase [Enterococcus casseliflavus ATCC 12755] Length = 404 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 7/184 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD+++ + D+DIAT+ P + +F +T I I +GT+ ++ + ++I Sbjct: 30 VGGSVRDTILGQPIHDVDIATSAFPAEIKALFPRT----IDIGIEHGTVLVLWEQAQYEI 85 Query: 92 TTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ R KV F R K D RRDFTINAL + G +ID GL D+ N+ Sbjct: 86 TTFRTEAAYQDYRRPDKVDFVRSLKEDLKRRDFTINALALQEDGVIIDLFDGLADIDNQI 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ +G R ED LR++R RF + G ++++ L A L +S ERI E Sbjct: 146 LRAVGHPQERFHEDALRMMRGLRFVSQLG-FVLETETLAAIHANHALLGKISVERIMIEF 204 Query: 210 NKLL 213 KLL Sbjct: 205 VKLL 208 >gi|311030316|ref|ZP_07708406.1| tRNA CCA-pyrophosphorylase [Bacillus sp. m3-13] Length = 405 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 7/164 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I I+ L + ++ VGG+VRD+LMN + DIDIAT+ P + +F KT + Sbjct: 9 IEIIERLEENGHEAYFVGGSVRDTLMNRVIGDIDIATSATPVEIQALFPKT----VDVGA 64 Query: 76 SYGTIKIIC-RKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI +I ++ +++TT R+D TD R+ +V+F + + D RRDFT+NA+ ++ Sbjct: 65 EHGTIIVITTEQESYEVTTFRTDGNYTDNRHPDEVIFVKSLEEDLKRRDFTMNAIAMNKH 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 GK+ID G D+ + I+ +G A R ED LR+LR RF + Sbjct: 125 GKIIDPFDGEKDINRQVIRTVGKAKDRFREDALRMLRAVRFASQ 168 >gi|65318901|ref|ZP_00391860.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Bacillus anthracis str. A2012] Length = 400 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 125/242 (51%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 12 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 68 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 128 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 179 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 180 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 239 Query: 247 SQ 248 +Q Sbjct: 240 TQ 241 >gi|218289185|ref|ZP_03493421.1| Polynucleotide adenylyltransferase region [Alicyclobacillus acidocaldarius LAA1] gi|218240768|gb|EED07947.1| Polynucleotide adenylyltransferase region [Alicyclobacillus acidocaldarius LAA1] Length = 407 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 7/202 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++ +L + +VGGAVRD L+ L+ D+D+AT+ P+ V +F++T I T I Sbjct: 9 EVMEVLRSAGYAAYLVGGAVRDLLLGLTPSDLDVATSARPEDVKSLFART----IDTGIR 64 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGK 134 +GT+ + + ++TT R++ DGR V F D +AD RRDFT+NA+ D G+ Sbjct: 65 HGTVSVQSAGCWIEVTTFRAEGPYGDGRRPDFVRFVDDVEADLARRDFTMNAMALDLDGR 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID G DL R ++ +GD R ED LR+LR RF + D A + Sbjct: 125 LIDPFDGRGDLSRRLLRAVGDPVARFREDGLRLLRAVRFAVQF-HLTCDPATEAALAETA 183 Query: 195 KGLKILSSERIWSEINKLLEAK 216 ++ ++ ERI E+ +L A Sbjct: 184 DAIRPIALERIGRELERLSHAP 205 >gi|257867673|ref|ZP_05647326.1| poly A polymerase [Enterococcus casseliflavus EC30] gi|257874001|ref|ZP_05653654.1| poly A polymerase [Enterococcus casseliflavus EC10] gi|257876580|ref|ZP_05656233.1| poly A polymerase [Enterococcus casseliflavus EC20] gi|257801756|gb|EEV30659.1| poly A polymerase [Enterococcus casseliflavus EC30] gi|257808165|gb|EEV36987.1| poly A polymerase [Enterococcus casseliflavus EC10] gi|257810746|gb|EEV39566.1| poly A polymerase [Enterococcus casseliflavus EC20] Length = 404 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 7/184 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VRD+++ + D+DIAT+ P + +F +T I I +GT+ ++ + ++I Sbjct: 30 VGGSVRDTILGQPIHDVDIATSAFPAEIKALFPRT----IDIGIEHGTVLVLWEQAQYEI 85 Query: 92 TTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R++ R KV F R K D RRDFTINAL + G +ID GL D+ N+ Sbjct: 86 TTFRTEAAYQDYRRPDKVDFVRSLKEDLKRRDFTINALALQEDGVIIDLFDGLADIDNQI 145 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ +G R ED LR++R RF + G ++++ L A L +S ERI E Sbjct: 146 LRAVGHPQERFHEDALRMMRGLRFVSQLG-FVLETETLAAIHANHALLGKISVERIMIEF 204 Query: 210 NKLL 213 KLL Sbjct: 205 VKLL 208 >gi|293376425|ref|ZP_06622657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Turicibacter sanguinis PC909] gi|292644934|gb|EFF63012.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Turicibacter sanguinis PC909] Length = 386 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 9/197 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRD L+ + DIDI T+ PD V+ +F KT I T I +GT+ ++ Sbjct: 20 EAYFVGGMVRDRLLGRDIYDIDITTSAKPDVVIGLFEKT----IQTGIKHGTVTVMIEGI 75 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++TT R + + R ++V FT D RRDFT+NA+ G + D GL DL Sbjct: 76 PVEVTTFRVEEAYEDFRRPSEVRFTSSLIEDLKRRDFTMNAIAESIDGTLEDPFHGLKDL 135 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 NR IK +G+A R +ED LR+LR RF + G E ++ + + A ++ +S ER Sbjct: 136 SNRQIKAVGEAKERFIEDPLRMLRGLRFMSKLGFELEDETSKAIGEVGAL--IEHISKER 193 Query: 205 IWSEINKLLEAKNPLNA 221 I EI ++ + L A Sbjct: 194 IKKEIEGMVSGEFSLKA 210 >gi|30261632|ref|NP_844009.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Ames] gi|47526833|ref|YP_018182.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184463|ref|YP_027715.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Sterne] gi|49477261|ref|YP_035752.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869330|ref|ZP_02213989.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0488] gi|167633263|ref|ZP_02391588.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0442] gi|167639160|ref|ZP_02397433.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0193] gi|170706553|ref|ZP_02897013.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0389] gi|177650452|ref|ZP_02933419.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0174] gi|190568682|ref|ZP_03021587.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis Tsiankovskii-I] gi|196033458|ref|ZP_03100870.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus W] gi|196039035|ref|ZP_03106342.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus NVH0597-99] gi|218902747|ref|YP_002450581.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH820] gi|227815617|ref|YP_002815626.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. CDC 684] gi|229602549|ref|YP_002866039.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0248] gi|254683124|ref|ZP_05146985.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. CNEVA-9066] gi|254723712|ref|ZP_05185498.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. A1055] gi|254734472|ref|ZP_05192184.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Western North America USA6153] gi|254740884|ref|ZP_05198572.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Kruger B] gi|254755122|ref|ZP_05207156.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Vollum] gi|254759659|ref|ZP_05211683.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Australia 94] gi|73619738|sp|Q81ST6|CCA_BACAN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619747|sp|Q6HL19|CCA_BACHK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|226702035|sp|B7JH21|CCA_BACC0 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|254813684|sp|C3P5Q6|CCA_BACAA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|254813685|sp|C3L8Q3|CCA_BACAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|30255860|gb|AAP25495.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. Ames] gi|47501981|gb|AAT30657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178390|gb|AAT53766.1| polyA polymerase [Bacillus anthracis str. Sterne] gi|49328817|gb|AAT59463.1| poly(A) polymerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714770|gb|EDR20288.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0488] gi|167512950|gb|EDR88323.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0193] gi|167531301|gb|EDR93979.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0442] gi|170128651|gb|EDS97518.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0389] gi|172083596|gb|EDT68656.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0174] gi|190560282|gb|EDV14262.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis Tsiankovskii-I] gi|195993892|gb|EDX57848.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus W] gi|196030180|gb|EDX68780.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus NVH0597-99] gi|218538455|gb|ACK90853.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH820] gi|227007135|gb|ACP16878.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. CDC 684] gi|229266957|gb|ACQ48594.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0248] Length = 397 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 125/242 (51%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|218896565|ref|YP_002444976.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus G9842] gi|226702036|sp|B7IPB4|CCA_BACC2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|218543355|gb|ACK95749.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus G9842] Length = 397 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 125/242 (51%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF--------VSALGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|170686300|ref|ZP_02877522.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0465] gi|170669997|gb|EDT20738.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0465] Length = 397 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 141/280 (50%), Gaps = 25/280 (8%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 +Q FE I++ + F+ I ++ S+ KFS Sbjct: 237 TQY--NWDSFETDIEAWVFFLYCIG-EEHPSVFLRQWKFS 273 >gi|217031986|ref|ZP_03437487.1| hypothetical protein HPB128_187g13 [Helicobacter pylori B128] gi|216946296|gb|EEC24902.1| hypothetical protein HPB128_187g13 [Helicobacter pylori B128] Length = 264 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 3/189 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD LM ++ +D D+ + L + + K ++V+ T I +GTI + + ++ Sbjct: 24 LVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHGTITALKNHQSYE 83 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G + + N+ Sbjct: 84 ITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAYSPTKGLIDPFKGRSAIENQ 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +G A R ED LRILR RF A G K I A K LK LS ER+ SE Sbjct: 144 MIECVGGARLRFFEDALRILRALRFSATLGFK-IAPSTKRAVFACKDLLKHLSKERLQSE 202 Query: 209 INKLLEAKN 217 +NKLL KN Sbjct: 203 LNKLLMGKN 211 >gi|16801085|ref|NP_471353.1| tRNA CCA-pyrophosphorylase [Listeria innocua Clip11262] gi|73619792|sp|Q92AA3|CCA_LISIN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|16414520|emb|CAC97249.1| cca [Listeria innocua Clip11262] Length = 393 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N + D+DIAT+ P+ V IF T T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRPISDVDIATSAFPEEVKEIFQST----YDTGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + K+ +++TT R++ + R ++V F R + D LRRDFT+NA+ D+ K+ Sbjct: 67 GTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMDENFKL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 127 HDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFQLDKETETALTNQIA 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ S ERI E K+++ + AI Sbjct: 186 LLQHTSVERITVEWIKMIKGQAVKRAI 212 >gi|313637213|gb|EFS02729.1| CCA-adding enzyme [Listeria seeligeri FSL S4-171] Length = 393 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 6/161 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IFS T T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFSST----FDTGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + + +++TT R++ + R ++V F R + D LRRDFT+NA+ D++ ++ Sbjct: 67 GTVTVRENGECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMDEKFQL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 D G ++N+ IK +G A R ED LR++R RF + Sbjct: 127 HDPFSGRISIQNKEIKAVGKAQERFHEDALRMMRAIRFLSQ 167 >gi|326939253|gb|AEA15149.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 397 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 125/242 (51%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF--------VSALGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|313893117|ref|ZP_07826694.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442470|gb|EFR60885.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 472 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 112/202 (55%), Gaps = 10/202 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS--- 74 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + R + I T+ Sbjct: 8 ILTVLEEAGYEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVL---RGQGIQTTDLV 64 Query: 75 -ISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 S+G + K ++I T R++ R ++ + + D LRRDFT+N + ++ Sbjct: 65 GKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAMNR 124 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID VGG D++++T++ IGDA R ED LR+ R RF A + D L A Sbjct: 125 FGEVIDLVGGCRDIKHKTLRTIGDAQKRFEEDALRLFRACRFVAKL-DFLPSKDLLEAMP 183 Query: 192 KAKKGLKILSSERIWSEINKLL 213 KA + LS ER+ +EI++L+ Sbjct: 184 KAFHRVSGLSLERVRNEIDRLM 205 >gi|257869568|ref|ZP_05649221.1| poly A polymerase [Enterococcus gallinarum EG2] gi|257803732|gb|EEV32554.1| poly A polymerase [Enterococcus gallinarum EG2] Length = 404 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 7/200 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L + + VGG+VRD+++ + D+DIAT+ P + +F +T I I Sbjct: 14 IPVLQRIEAAGFDAYFVGGSVRDTILGQPIHDVDIATSAFPAEIKELFPRT----IDLGI 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R KV F R D RRDFTINA + G Sbjct: 70 EHGTVLVLWENEQYEITTFRTEEAYQDFRRPDKVAFVRSLAEDLKRRDFTINAFALKKDG 129 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GL DL+ + ++ +G H R ED LR++R RF + G ++ A Sbjct: 130 EIIDLFDGLADLQLKILRAVGQPHERFHEDALRMMRGLRFVSQLG-FTLEPRTFEAIYDN 188 Query: 194 KKGLKILSSERIWSEINKLL 213 + L +S ERI E KLL Sbjct: 189 HQLLAKISVERITIEFVKLL 208 >gi|325956656|ref|YP_004292068.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus 30SC] gi|325333221|gb|ADZ07129.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus 30SC] Length = 405 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 7/199 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T I Sbjct: 15 MPVLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTGI 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G Sbjct: 71 KHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMHG 130 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A Sbjct: 131 DIVDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKDN 189 Query: 194 KKGLKILSSERIWSEINKL 212 + LK +S ERI E K+ Sbjct: 190 HELLKKISVERIREEFVKM 208 >gi|327183480|gb|AEA31927.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1118] Length = 399 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T I + Sbjct: 17 VLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTGIKH 72 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G + Sbjct: 73 GTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMHGDI 132 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A + Sbjct: 133 VDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKDNHE 191 Query: 196 GLKILSSERIWSEINKL 212 LK +S ERI E K+ Sbjct: 192 LLKKISVERIREEFVKM 208 >gi|289435254|ref|YP_003465126.1| polyA polymerase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171498|emb|CBH28042.1| polyA polymerase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 393 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 6/161 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IFS T T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFSST----FDTGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + + +++TT R++ + R ++V F R + D LRRDFT+NA+ D++ ++ Sbjct: 67 GTVTVRENGECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMDEKFQL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 D G ++N+ IK +G A R ED LR++R RF + Sbjct: 127 HDPFSGRISIQNKEIKAVGKAQERFHEDALRMMRAIRFLSQ 167 >gi|315038203|ref|YP_004031771.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1112] gi|312276336|gb|ADQ58976.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1112] Length = 399 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 7/197 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T I + Sbjct: 17 VLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTGIKH 72 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + ++ITT R++ R V F ++ D RRDFTINAL D G + Sbjct: 73 GTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMHGDI 132 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A + Sbjct: 133 VDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKDNHE 191 Query: 196 GLKILSSERIWSEINKL 212 LK +S ERI E K+ Sbjct: 192 LLKKISVERIREEFVKM 208 >gi|196046561|ref|ZP_03113785.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus 03BB108] gi|225863499|ref|YP_002748877.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus 03BB102] gi|254813686|sp|C1EN33|CCA_BACC3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|196022494|gb|EDX61177.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus 03BB108] gi|225787215|gb|ACO27432.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus 03BB102] Length = 397 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 125/242 (51%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 125 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|19572329|emb|CAD19096.1| polynucleotide adenyltransferase [Stigmatella aurantiaca] Length = 423 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 108/396 (27%), Positives = 176/396 (44%), Gaps = 28/396 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD L ++ +D D+A++ LP V F KVIPT I +GT+ ++ + + Sbjct: 31 LVGGCVRDILRGVAPKDFDVASSALPQEVQGAFK----KVIPTGIQHGTVTVVIGGNHVE 86 Query: 91 ITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRN 147 +TT RS D + R + V F RD D RRDFTINA+ D G+ ++D GG+ DL Sbjct: 87 VTTFRSEGDYLDGRRPSSVTFERDITQDLSRRDFTINAMAYDPLGRELVDPFGGMTDLHA 146 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R I+ + R ED LR LR RF A G +D A + ++ ER+ Sbjct: 147 RLIRCVRSPIERFSEDGLRPLRAVRFAAVLG-FTLDPATRDAIPPTLPVFRKVALERVRE 205 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E KLL + + + G+ E FL + D+ +++ A V + +R Sbjct: 206 EFVKLLLSPRAELGLSLLVETGLL-EAFLPELSSAGDEAARMARA-AVQGAPAEVEIRLA 263 Query: 268 VLISWQDKKS-ILSMAKKFSLPREIRYFL-ISFFNCNFNQKT-LSIPEIKKLFYLYGDKV 324 L++ + S +A + P ++ + + + ++T + P +++L G Sbjct: 264 ALLADLVRGSQARDIALRLKFPTKVADTVGLLVEHAALEERTEQAEPALRRLLAQVGP-- 321 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKKPL----FPLTGDDVVKY- 373 A L+ LA+ + + + + V L + K PL LTG D++ Sbjct: 322 --ALLEPLLAVARSRVEARQPERLPSVLRLQERLRTLAAAKPPLTSKELALTGKDIMAAL 379 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 GI P +VG + ++ E L LLR Sbjct: 380 GIGPSPQVGEATRFLLEAVLDDPALNESERLKDLLR 415 >gi|294794520|ref|ZP_06759656.1| polyA polymerase [Veillonella sp. 3_1_44] gi|294454850|gb|EFG23223.1| polyA polymerase [Veillonella sp. 3_1_44] Length = 472 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 16/205 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI-- 75 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + + T + Sbjct: 8 ILTVLEEAGHEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRS--HDIQTTDLVG 65 Query: 76 -SYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 S+G + + ++I T R++ R ++++ + D LRRDFT+N + ++ Sbjct: 66 KSFGVVVATLEGRQYEIATYRTERYGADSHRPEEIIYADTLEEDVLRRDFTVNGMAMNRF 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGLV 188 G+VID VGG D++++T++ IG+A R ED LR+ R RF A +D D L Sbjct: 126 GEVIDLVGGRRDIKHKTLRTIGNAQERFEEDALRLFRACRFVA-----KLDFLPTEDLLE 180 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A KA + LS ER+ SE+++L+ Sbjct: 181 AMPKAFHRVPGLSLERVRSELDRLM 205 >gi|294792766|ref|ZP_06757913.1| CCA-adding enzyme [Veillonella sp. 6_1_27] gi|294456665|gb|EFG25028.1| CCA-adding enzyme [Veillonella sp. 6_1_27] Length = 494 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 12/203 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSIS 76 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + S Sbjct: 30 ILTVLEEAGHEAYIIGGAVRDMLMHQKPHDFDIVTSARPDTVIEVLRGHDIQTTDLVGKS 89 Query: 77 YGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +G + K ++I T R++ R ++ + + D LRRDFT+N + ++ G+ Sbjct: 90 FGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAMNRYGE 149 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGLVAS 190 VID VGG D++++ ++ IG+A R ED LR+ R RF A +D D L A Sbjct: 150 VIDLVGGRRDIKHKMLRTIGNAQERFEEDALRLFRACRFVA-----KLDFLPSKDLLEAM 204 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 KA + LS ER+ +EIN+L+ Sbjct: 205 PKAFHRVPGLSLERVRNEINRLM 227 >gi|118477089|ref|YP_894240.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis str. Al Hakam] gi|118416314|gb|ABK84733.1| poly(A) polymerase [Bacillus thuringiensis str. Al Hakam] Length = 400 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 125/242 (51%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 12 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVGLE 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 68 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + + G K K Sbjct: 128 MVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 179 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 180 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 239 Query: 247 SQ 248 +Q Sbjct: 240 TQ 241 >gi|75760406|ref|ZP_00740450.1| POLY(A) POLYMERASE / TRNA NUCLEOTIDYLTRANSFERASE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492117|gb|EAO55289.1| POLY(A) POLYMERASE / TRNA NUCLEOTIDYLTRANSFERASE [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 400 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 112/199 (56%), Gaps = 7/199 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 12 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVGLE 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 68 HGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G ++ R I +G+A R ED LR++R RF + G +I++ A Sbjct: 128 MVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTLG-FSIETKTKQAIETYG 186 Query: 195 KGLKILSSERIWSEINKLL 213 L+ ++ ERI E KLL Sbjct: 187 HLLEHIAIERITVEFEKLL 205 >gi|257462979|ref|ZP_05627383.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Fusobacterium sp. D12] gi|317060596|ref|ZP_07925081.1| poly(a) polymerase [Fusobacterium sp. D12] gi|313686272|gb|EFS23107.1| poly(a) polymerase [Fusobacterium sp. D12] Length = 446 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 L KGE +VGG VRD L+ D D T + + + RIF Y T S+G Sbjct: 18 QLERKGE--GYLVGGCVRDILLGKEPHDYDFCTNLSYEELKRIFKP--YPCKETGKSFGV 73 Query: 80 IKIICRKKYFDITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + F+I RSD +DGR K+ F + + D RRDFTINA+ + +D Sbjct: 74 FRVQIEGEEFEIARFRSDEGSDGRRPQKIKFVKTIEEDLARRDFTINAMAYHRSKGFLDL 133 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG DL+ + I+ +G+ RI ED LRI+R FRF + G +++ + A + K+ LK Sbjct: 134 YGGEEDLKKKRIRLVGNPIERIREDGLRIMRAFRFVSQLG-FHLEENTKRAIAQEKQMLK 192 Query: 199 ILSSERIWSEINKLL 213 ++ RI E NKL+ Sbjct: 193 KIAKSRITEEWNKLV 207 >gi|116327797|ref|YP_797517.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331544|ref|YP_801262.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120541|gb|ABJ78584.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125233|gb|ABJ76504.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 489 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 111/214 (51%), Gaps = 19/214 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ R Sbjct: 40 DEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRI--- 96 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-----------KADSLRR 120 + + I+ R K +++T RS + D R K V +D+ + D+ RR Sbjct: 97 -IGRRFKIVHILFRGKVIEVSTFRS--LPDYRLGKAVEDQDYLIKRDNKFGTPQEDAARR 153 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F G Sbjct: 154 DFTINSLYYDVRNDSIIDYVGGFEDIRNKILRVIGDPDISFREDPVRMLRAVKFAEILG- 212 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +++ A K K L+ SS R+ E NK+ Sbjct: 213 LDVEKTTSKAIRKHKAELEKASSSRMLEEYNKIF 246 >gi|290894259|ref|ZP_06557227.1| polyA polymerase [Listeria monocytogenes FSL J2-071] gi|290556198|gb|EFD89744.1| polyA polymerase [Listeria monocytogenes FSL J2-071] Length = 393 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF +T Y T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIF-QTSYD---TGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + +Y+++TT R++ + R ++V F R + D RRDFT+NA+ D+ + Sbjct: 67 GTVTVRENNEYYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHFVL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G ++N+ IK +G A R ED LR++R RF + + +D + A + Sbjct: 127 HDPFSGQEAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALESQIE 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ S ERI E K+++ K AI Sbjct: 186 LLQHTSVERITVEWIKMMKGKAAKRAI 212 >gi|121533605|ref|ZP_01665432.1| Polynucleotide adenylyltransferase [Thermosinus carboxydivorans Nor1] gi|121307596|gb|EAX48511.1| Polynucleotide adenylyltransferase [Thermosinus carboxydivorans Nor1] Length = 302 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SIS 76 IL+ L + I GGAVRD + V D DIAT+ P+ V I ++ ++V+ + Sbjct: 12 ILTALGANGYAAYIAGGAVRDLVAGRPVNDYDIATSARPEAVREIAARQGWQVVDKLGTN 71 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 YG + ++ ++ T R + + R A+V + D RRDFT+NA+ D G Sbjct: 72 YGVVMVVVDGTGVEVATFRGERYGEDSHRPAEVWYADTITDDLSRRDFTVNAMAMDVAGN 131 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG DL R I+ +GD + R ED LR+LR RF A G ID D +A+I A Sbjct: 132 IIDPFGGRRDLAARLIRTVGDPNRRFGEDALRMLRACRFAAQLGFA-ID-DVTLAAIPAN 189 Query: 195 KG-LKILSSERIWSEINKLLEAKNP 218 G + LS ER+ E++KLL P Sbjct: 190 LGRMAGLSLERVRLELDKLLLGDYP 214 >gi|42526543|ref|NP_971641.1| polyA polymerase family protein [Treponema denticola ATCC 35405] gi|41816736|gb|AAS11522.1| polyA polymerase family protein [Treponema denticola ATCC 35405] Length = 448 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 117/209 (55%), Gaps = 9/209 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD + +D DIAT P V +F KT IPT I++GT+ I+ + + + Sbjct: 25 LVGGAVRDWFLGKPCKDYDIATDAEPKEVQALFRKT----IPTGIAHGTVTILYKDEKIE 80 Query: 91 ITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 TT R + +DGR + V + R + D RRDFT+NA+ + G ++D G+ +++ Sbjct: 81 CTTFRCEADYSDGRRPQSVNYVRSIEEDLSRRDFTMNAIAVSLKDGSIVDPFDGVKSIKS 140 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +TIK +G R ED LR +R RF + G K I+ + L A + + K +S ER Sbjct: 141 KTIKTVGSPLDRFGEDGLRPIRAIRFASQLGFK-IEEETLKAIPLSIEVCKKVSIERFRD 199 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 E K+L +++P+ ++ + + G+ K +FL Sbjct: 200 EFVKMLLSEHPIISLKLLEDTGLLK-VFL 227 >gi|87127876|gb|ABD22390.1| polyA polymerase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202749|gb|ABD30559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 366 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 7/187 (3%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS--DL 98 M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++TT R+ D Sbjct: 1 MGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEVTTFRAEEDY 56 Query: 99 ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158 + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR I+ +G A Sbjct: 57 VDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRIIRTVGIAEE 116 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED LR++R RF + +I ++ A +K LS ERI E+ KL+ N Sbjct: 117 RFQEDALRMIRCLRFQSQLS-FDIATETFEAMRIQMADIKFLSIERIVIELTKLMRGINV 175 Query: 219 LNAIVHM 225 + H+ Sbjct: 176 EKSFNHL 182 >gi|256826984|ref|YP_003150943.1| domain HDIG-containing protein [Cryptobacterium curtum DSM 15641] gi|256583127|gb|ACU94261.1| uncharacterized domain HDIG-containing protein [Cryptobacterium curtum DSM 15641] Length = 451 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 3/200 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ +VGG VRD L+ + DIDIA++ +R+ + T + Sbjct: 13 IIETLEQAGVEAWLVGGCVRDGLIGRPIHDIDIASSASWQETVRLCQAAGMTTVETGTQH 72 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDW-KADSLRRDFTINALYADQQGKV 135 GT+ II F++TT R + DGR+ + VF D D RRDFTINA+ + + Sbjct: 73 GTVTIIADGTPFEVTTFRGEGQYQDGRHPEYVFPVDSIDEDLARRDFTINAMAWNPSRGL 132 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D GG D + I+ +G A R ED LRILR RF + G ++++ A +A Sbjct: 133 HDPYGGQADAAAKIIRAVGKAQQRFDEDALRILRGARFASQLG-FTLETETAHAMNEAAH 191 Query: 196 GLKILSSERIWSEINKLLEA 215 L +S+ERI +E++ LL+ Sbjct: 192 NLARISAERIAAEMDALLKG 211 >gi|52143812|ref|YP_083016.1| tRNA CCA-pyrophosphorylase [Bacillus cereus E33L] gi|73619744|sp|Q63DJ6|CCA_BACCZ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|51977281|gb|AAU18831.1| poly(A) polymerase [Bacillus cereus E33L] Length = 397 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 22/242 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + Sbjct: 9 SIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLE 64 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ ++G+ Sbjct: 65 HGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGE 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ID G ++ R I +G A R ED LR++R RF + + G K K Sbjct: 125 RIDLFAGQEAIQKREIVTVGTAADRFQEDALRMMRGIRF--------VSTLGFSLETKTK 176 Query: 195 KGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQL 246 + ++ ++ ERI E KLL + + + +F + +L + E L + Sbjct: 177 QAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSEERLLKA 236 Query: 247 SQ 248 +Q Sbjct: 237 TQ 238 >gi|327539083|gb|EGF25715.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rhodopirellula baltica WH47] Length = 420 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 16/252 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + I++ LN + + GG VRD+L+ +D D+AT P+ V +F K + Sbjct: 15 AEAVRIITELNDAGFVAVLAGGCVRDALLGRKPKDFDVATDATPESVREVFGK--RNTLA 72 Query: 73 TSISYGTIKIICRKKYF-----------DITTLRSDL-ITDGRYAKVVFTRDWKADSLRR 120 S+G I ++ + ++ T R+D +DGR V D +AD++RR Sbjct: 73 FGESFGVIGVLPPRSAVTEEPSAKLMPTEVATFRADGNYSDGRRPDSVTYGDAEADAMRR 132 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN ++ D KVIDYVGG+ DL ++ IG A R ED LR+LR RF G Sbjct: 133 DFTINGMFYDLFDSKVIDYVGGIQDLEKGHLRTIGKAVQRFEEDKLRMLRAVRFATTLG- 191 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +I+ A + ++S ERI +E+ +++ + + + + G+ ++ ++ Sbjct: 192 FSIEYKTFAAIQNHASDISVVSGERIGAEMRRVMTSSASDFGLETLVDTGLALHVWPQLR 251 Query: 240 EISLDQLSQVIE 251 ++ + S+ I+ Sbjct: 252 SMNWTEYSRAIQ 263 >gi|291276560|ref|YP_003516332.1| putative poly(A) polymerase [Helicobacter mustelae 12198] gi|290963754|emb|CBG39589.1| putative poly(A) polymerase [Helicobacter mustelae 12198] Length = 379 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 5/207 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 ++GG VRD L+++ D D A + P + I I YGT+ ++ + ++ Sbjct: 22 LIGGCVRDMLLSIKPLDYDFACVLRPQILRDKLHANGIATIDVGIRYGTLGVLLEGEVYE 81 Query: 91 ITTLRSDLI-TDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + + D R+ + V F + D RRDF+INA+ +G ++D VGG+ DL + Sbjct: 82 ITTFRKEGVYLDARHPSSVEFAKSLAEDVRRRDFSINAIAYHPKGGIVDLVGGVQDLEDG 141 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ IGDA R ED LRILR F A +G + +S+ A + L L ERI E Sbjct: 142 VLRAIGDAQMRFFEDSLRILRGVGFVARFG-LHAESNTYSAMLSFAHLLDSLPRERISKE 200 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIF 235 K++ A L A+ G+F +F Sbjct: 201 WEKIICAPFCLRALKEF--AGVFVPLF 225 >gi|299821657|ref|ZP_07053545.1| tRNA adenylyltransferase [Listeria grayi DSM 20601] gi|299817322|gb|EFI84558.1| tRNA adenylyltransferase [Listeria grayi DSM 20601] Length = 395 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 9/223 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+ + D+DIAT+ P+ V IF KT T I Sbjct: 9 LPVLQKLTAAGFEAYFVGGSVRDFLIGRKIADVDIATSAFPEEVKEIFPKT----YDTGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ + +++ITT R++ + R +V F R D RRDFT+NA+ D G Sbjct: 65 EHGTVTVRENGTFYEITTFRTEGTYEDFRRPKEVTFIRSLTEDLRRRDFTMNAIAMDAAG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + ID G + + I +GD H R ED LR++R RF + + +D A + Sbjct: 125 RFIDPFRGKEAITAKQICAVGDPHERFHEDALRMMRAIRFVSQL-DFQLDQATRQALQEN 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 K L + ER +E KLL+ K A+ + + G+ E++L Sbjct: 184 KALLAHTAVERKTTEWVKLLQGKAVNKALKLLVDSGV--EVYL 224 >gi|85057887|ref|YP_456803.1| poly(A) polymerase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789992|gb|ABC65724.1| poly(A) polymerase [Aster yellows witches'-broom phytoplasma AYWB] Length = 407 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 120/234 (51%), Gaps = 22/234 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+++L ++ IVGG VRD L+ ++ +DIDI T P ++ + K I+ Sbjct: 13 IITILKTNGFEAFIVGGTVRDYLLKINANEDIDITTNAAPKQIKLLLCPK--KTTQIQIN 70 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGK 134 YG++KI K F+ITT R + D R+ +++ FT++ D LRRDFTINAL D+ GK Sbjct: 71 YGSLKITFEKYLFEITTYRKEGTYKDYRHPSEIFFTKNIHQDLLRRDFTINALLMDETGK 130 Query: 135 VIDYVG---GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLV 188 + D+ G DL+ I+ I D R ED LRILR F F + EKN Sbjct: 131 IFDFTPEKKGKTDLKKGLIRTIKDPFIRFQEDPLRILRAFYFQSKLCFCIEKNTKK---- 186 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKN-------PLNAIVHMYNGGIFKEIF 235 A I+ L +SS+RI+ + K++ KN + H++ I+K I Sbjct: 187 AIIQKNHLLAKISSQRIYEHLEKIITHKNWHQTFKTMIETKTHLFLPQIYKSIL 240 >gi|297620654|ref|YP_003708791.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044] gi|297375955|gb|ADI37785.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044] Length = 413 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 113/210 (53%), Gaps = 15/210 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 DSD + ++ LN+ + +VGG+VRD L+ +D DI+T+ P + +IF + + +I Sbjct: 19 DSDALYVIRKLNEAGYTAYLVGGSVRDLLVKREPKDFDISTSAHPQEIKKIFRRNCF-LI 77 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINA 126 IK KK +++T RS G A + RD W + D +RRDFTIN Sbjct: 78 GKRFRLAHIKF--GKKIIEVSTFRS-----GENASDLIVRDNTWGTEEEDVIRRDFTING 130 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 L+ D + KVIDYVGG D+ + ++ IGD R +D +R+LR +F A +G NID Sbjct: 131 LFYDPFEHKVIDYVGGWEDIHQKVLRSIGDPIIRFKQDPVRMLRLIKFRARFGF-NIDEQ 189 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEA 215 A I +K + S RI E+ ++LE+ Sbjct: 190 TKQALIATRKEITKSSPARILEEMLRMLES 219 >gi|238018594|ref|ZP_04599020.1| hypothetical protein VEIDISOL_00424 [Veillonella dispar ATCC 17748] gi|237865065|gb|EEP66355.1| hypothetical protein VEIDISOL_00424 [Veillonella dispar ATCC 17748] Length = 472 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 18/206 (8%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS--- 74 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + R + I T+ Sbjct: 8 ILTVLEEAGYEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVL---RGQDIQTTDLV 64 Query: 75 -ISYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 S+G + K ++I T R++ R ++ + + D LRRDFT+N + ++ Sbjct: 65 GKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEIAYADTLEEDVLRRDFTVNGMAMNR 124 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGL 187 G+VID VGG D++++T++ IG+A R ED LR+ R RF A +D D L Sbjct: 125 FGEVIDLVGGRRDIKHKTLRTIGNAQQRFEEDALRLFRACRFVA-----KLDFLPTEDLL 179 Query: 188 VASIKAKKGLKILSSERIWSEINKLL 213 A KA + LS ER+ SE+++L+ Sbjct: 180 EAMPKAFYRVPGLSLERVRSELDRLM 205 >gi|332654007|ref|ZP_08419751.1| poly A polymerase [Ruminococcaceae bacterium D16] gi|332517093|gb|EGJ46698.1| poly A polymerase [Ruminococcaceae bacterium D16] Length = 437 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 6/204 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + +L+ L ++ +VGG VRD L D D AT+ P+ +M + + Sbjct: 6 DPRALEVLARLRASGYQAVLVGGCVRDFLRGKEPHDYDAATSARPEEIMSACAD--LHCV 63 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 PT + +GT+ ++C+ ++TT R + +DGR+ +V FT D RRDFTINA+ Sbjct: 64 PTGLRHGTVTVLCQGLPVEVTTFRREGTYSDGRHPDQVSFTTSLTEDLARRDFTINAMAW 123 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D+ G + D GG DL I+ +G+ R ED LRILR R A + I D A Sbjct: 124 DEDG-LADRFGGRADLEAGLIRCVGEPERRFQEDALRILRGLRLAAQL-DFAIHPDTAQA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 L +++ ERI E +LL Sbjct: 182 IRTETPRLAMVARERIGGEFLRLL 205 >gi|225375849|ref|ZP_03753070.1| hypothetical protein ROSEINA2194_01481 [Roseburia inulinivorans DSM 16841] gi|225212284|gb|EEG94638.1| hypothetical protein ROSEINA2194_01481 [Roseburia inulinivorans DSM 16841] Length = 446 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 7/189 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD+++ D DI T+ P++V +F T I T I +GT+ ++ + F++ Sbjct: 26 VGGCVRDTMLGRIPMDWDITTSAKPEQVKELFRHT----IDTGIQHGTVTVMLEHEGFEV 81 Query: 92 TTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 TT R D D R+ K V FT + D RRDFTINA+ + + ++D G+ DL Sbjct: 82 TTYRIDGEYEDARHPKEVQFTSNLLEDLKRRDFTINAMAYNDKDGLVDAFDGVGDLERGV 141 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ +G A R ED LR+LR RF A G +I+ + A + + +S+ERI E+ Sbjct: 142 IRCVGAAVERFTEDALRMLRAVRFGAQLG-FSIEDETREAIVSLAPNIAKVSAERIQIEM 200 Query: 210 NKLLEAKNP 218 KLL + +P Sbjct: 201 VKLLTSGHP 209 >gi|303232267|ref|ZP_07318966.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Atopobium vaginae PB189-T1-4] gi|302481677|gb|EFL44738.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Atopobium vaginae PB189-T1-4] Length = 480 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 148/345 (42%), Gaps = 23/345 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 + GG VRD L+N DID+AT ++ V T + +GT+ + + Sbjct: 38 VAGGFVRDCLLNRPFCDIDLATNAHWQTTKKLLEAAHIHVFETGVKHGTLTAVVDGAAVE 97 Query: 91 ITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R ++ +D R+ VVF +D RRDFTINAL +Q ++D GG+ DL R Sbjct: 98 ITTFRQEVGYSDHRHPDTVVFVTSITSDCARRDFTINALAWRKQDGLVDCFGGVRDLNAR 157 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +GD H R ED LR++R RF A Y + I+ A + ++ +RI E Sbjct: 158 LVRCVGDPHTRFSEDPLRLVRALRFSATYAFR-IEEATFAALCSDIHDIAYVAPQRIAQE 216 Query: 209 INKLLEAKNPLNAIVHMYN--GGIFKEIFLDVQEISL-----DQLSQVIEAEQVFEWKID 261 + KL+ A++ + +F DVQ L + ++ V Sbjct: 217 VKKLVACDRFAYALLCYPSCFAVCLSALFRDVQAAPLTSSQVEYIAACCSLYVVLSETKG 276 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 +L ++ + WQ + +++ S R +S+ + +L + + L L G Sbjct: 277 NLSCYVAI--WQRALARMNLVHSHSFSRMCAQ--LSYPKNTMRRASLCVAVVDALEALCG 332 Query: 322 DKV---------MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + A++++ L +TH ++L D +H Sbjct: 333 QLAASSCVSHSDVAARVQLCLFDMSPRITHMSRAYLLSCAYDAVH 377 >gi|296122115|ref|YP_003629893.1| tRNA adenylyltransferase [Planctomyces limnophilus DSM 3776] gi|296014455|gb|ADG67694.1| tRNA adenylyltransferase [Planctomyces limnophilus DSM 3776] Length = 420 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 104/415 (25%), Positives = 186/415 (44%), Gaps = 34/415 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I I++ L + + GG VRD L+ + +D D+AT+ P+ V ++F R K + Sbjct: 9 IEIVTTLRQAGHIALFAGGCVRDLLLGKTPKDYDVATSANPEEVQQLFGYRRTKAV--GA 66 Query: 76 SYGTIKII-CRKK-------------YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRR 120 S+G I ++ RKK ++ T R D L DGR + V + D+ RR Sbjct: 67 SFGVIMVLPARKKGEPHHKSDQPAIPPVEVATFRKDGLYVDGRRPETVTFSSPEEDAQRR 126 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN ++ D + + D+VGG DL++R ++ IG A R ED LR+LR RF + + Sbjct: 127 DFTINGMFFDPLTETVHDFVGGQIDLQSRQLRAIGIAADRFKEDKLRLLRAVRFNSIL-D 185 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +I+ + A + ++S ERI +E+ ++L + ++I + + G+ IF + Sbjct: 186 FSIEFETWRAIQDLAPEICVVSHERIAAELRRMLAHPSRHSSIQTLDHAGLTGAIFGKIL 245 Query: 240 EISLDQLSQVIEAEQV--FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 + L +++ + FE + LR + + + +SI S + + R+ +L + Sbjct: 246 SATSPDLLLALQSLKTDHFETAMALWLRELPV---ETLRSICSQLRLSNQERDAIVWLHT 302 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + + K+L +IA + + H D + + Sbjct: 303 MQSAWLEFSDWPVCRQKRLLAYPLVNELIASGQALASAQLLESRHVDAA-----IERLQS 357 Query: 358 WKK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 W K P +TG+D++ +GI PG + IL + + S+E H L Sbjct: 358 WSKEEIDPPLQVTGEDLIHWGISPGPQFKQILEQLRDGQLEGRL-TSREAAHQWL 411 >gi|323141323|ref|ZP_08076218.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Phascolarctobacterium sp. YIT 12067] gi|322414210|gb|EFY05034.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Phascolarctobacterium sp. YIT 12067] Length = 506 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SIS 76 ILS LN ++ +VGGAVRD L+ S D DI T LP++V+ + + +K + + Sbjct: 13 ILSALNAAGYEAYLVGGAVRDLLLGKSPDDYDITTNALPEQVLAVCKQQDWKTVDQLGHN 72 Query: 77 YGTIKIICRKKYFDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +G + I+ ++TT R + D R A F + D RRDFT+NA+ G Sbjct: 73 FGCVVIVINGVATEVTTFRGERYNDEDMHRPAATWFCSSLREDLSRRDFTVNAMALSLNG 132 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + DY GG DL+ + ++ +GDA R ED LR+LR RF A G Sbjct: 133 TLYDYFGGQQDLQQKILRTVGDAKQRFHEDALRMLRACRFVAQLG 177 >gi|315282932|ref|ZP_07871227.1| CCA-adding enzyme [Listeria marthii FSL S4-120] gi|313613420|gb|EFR87269.1| CCA-adding enzyme [Listeria marthii FSL S4-120] Length = 393 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 6/163 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T I Sbjct: 9 LPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ + K+ +++TT R++ + R ++V F R K D LRRDFT+NA+ D+ Sbjct: 65 AHGTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLKEDLLRRDFTMNAIAMDEHF 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 + D G ++++ IK +G A R ED LR++R RF + Sbjct: 125 DLHDPFAGQLAIQHKEIKAVGKASERFHEDALRMMRAVRFLSQ 167 >gi|755607|gb|AAA92878.1| polyA polymerase [Bacillus subtilis subsp. subtilis str. 168] Length = 377 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 23/219 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T Sbjct: 9 LPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT--------- 59 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 D+ SD + R ++V F + D RRD TINA+ GKV Sbjct: 60 -------------VDVGKDESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTADGKV 106 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GG D+ + I+ +G R ED LR+LR RF + G + + A K K Sbjct: 107 LDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSPETEEAIAKEKS 165 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L +S ER E KLL+ + A+ + +++E+ Sbjct: 166 LLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYEEL 204 >gi|39938588|ref|NP_950354.1| tRNA nucleotidyltransferase/polyA polymerase [Onion yellows phytoplasma OY-M] gi|39721697|dbj|BAD04187.1| tRNA nucleotidyltransferase/polyA polymerase [Onion yellows phytoplasma OY-M] Length = 412 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 9/206 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+++L ++ IVGG VRD L+ ++ +DIDI T P ++ + K I+ Sbjct: 19 IITILKTNGFEAFIVGGTVRDYLLKINANEDIDITTAAAPQQIKLLLCPE--KTTQIKIN 76 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGK 134 YG+ KI F+ITT R + D R+ +++ FT++ D LRRDFTIN L D+ GK Sbjct: 77 YGSFKITFENYLFEITTYRKEGTYKDYRHPSEIFFTKNIHQDLLRRDFTINTLLMDETGK 136 Query: 135 VIDYVG---GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + D+ G DL+ I+ I D R ED LRILR F F + G I+ A I Sbjct: 137 IFDFTPEKQGKKDLKQGLIRTIKDPFIRFQEDPLRILRAFYFQSKLGF-CIEKTTQKAII 195 Query: 192 KAKKGLKILSSERIWSEINKLLEAKN 217 + L +SS+RI+ I K++ KN Sbjct: 196 RKNHLLAKISSQRIYENIEKIITHKN 221 >gi|47094230|ref|ZP_00231942.1| polyA polymerase [Listeria monocytogenes str. 4b H7858] gi|226224509|ref|YP_002758616.1| tRNA CCA-adding enzyme [Listeria monocytogenes Clip81459] gi|254825600|ref|ZP_05230601.1| polyA polymerase [Listeria monocytogenes FSL J1-194] gi|254931924|ref|ZP_05265283.1| polyA polymerase [Listeria monocytogenes HPB2262] gi|255520919|ref|ZP_05388156.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J1-175] gi|259585845|sp|C1KWK5|CCA_LISMC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|47017402|gb|EAL08223.1| polyA polymerase [Listeria monocytogenes str. 4b H7858] gi|225876971|emb|CAS05680.1| Putative tRNA CCA-adding enzyme [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583476|gb|EFF95508.1| polyA polymerase [Listeria monocytogenes HPB2262] gi|293594843|gb|EFG02604.1| polyA polymerase [Listeria monocytogenes FSL J1-194] gi|328466255|gb|EGF37412.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 1816] gi|332312346|gb|EGJ25441.1| CCA-adding enzyme [Listeria monocytogenes str. Scott A] Length = 393 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF +T Y T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIF-QTSYD---TGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ + Sbjct: 67 GTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEHFAL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G ++N+ IK +G A R ED LR++R RF + + +D + A + Sbjct: 127 QDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALESQIE 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ S ERI E K+++ K AI Sbjct: 186 LLQHTSVERITVEWLKMMKGKAAKRAI 212 >gi|282890317|ref|ZP_06298845.1| hypothetical protein pah_c016o016 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499699|gb|EFB41990.1| hypothetical protein pah_c016o016 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 412 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 8/236 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 GG VRD LM DIDIAT P++++ +F T + +++G + ++ ++I Sbjct: 25 AGGWVRDYLMGHPSSDIDIATNAPPEKILDLFPHT----LLVGLAFGVVIVLIEGHQYEI 80 Query: 92 TTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRT 149 +T R D DGR + + D+ RRDFTIN ++ D + + D+V G DL Sbjct: 81 STFRQDFDYLDGRKPSKIQLSTPQEDAKRRDFTINGMFYDPIEDTIFDFVRGAVDLDLGI 140 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSE 208 I+ IG+ R LED LR++R RF + +G ID+D A I+ L ++ ERIW E Sbjct: 141 IRTIGNPQERFLEDRLRMVRAIRFASRFGFI-IDTDTQEAIIENASTLFPSVAMERIWQE 199 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 K+ + +A++ ++ + EIF + L+ + +++ ++ + ++L Sbjct: 200 FCKMSNYPSFDHALIELHRLQLLAEIFPTLANTHLNAIKHRVKSFHLYPHETPTIL 255 >gi|310821276|ref|YP_003953634.1| tRNA nucleotidyltransferase/poly(a) polymerase family protein [Stigmatella aurantiaca DW4/3-1] gi|309394348|gb|ADO71807.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Stigmatella aurantiaca DW4/3-1] Length = 423 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H+ ++++L L + + +VGG VRD L ++ +D D+A++ LP V F Sbjct: 7 HRADIPRPILDVLHRLRELGFAAFLVGGCVRDILRGVAPKDFDVASSALPQEVQGAFK-- 64 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTI 124 KVIPT I +GT+ ++ + ++TT RS D + R + V F RD D RRDFTI Sbjct: 65 --KVIPTGIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLSRRDFTI 122 Query: 125 NALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NA+ D G+V +D GG+ DL+ I+ + R ED LR +R RF A G Sbjct: 123 NAMAYDPVGQVLVDPFGGMEDLQAHLIRCVRSPLERFSEDGLRPMRAVRFAAVLG 177 >gi|90023016|ref|YP_528843.1| poly(A) polymerase [Saccharophagus degradans 2-40] gi|89952616|gb|ABD82631.1| poly(A) polymerase [Saccharophagus degradans 2-40] Length = 443 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 9/222 (4%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPTSIS 76 L + ++ +VGG VRD L++ +D D+AT+ P++V ++F R ++++ Sbjct: 42 LQRAGYEAYLVGGGVRDLLLDADPKDFDVATSATPEQVRKVFRNARIIGKRFRIVHVRFG 101 Query: 77 YGTIKIIC-RKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133 I++ R + D + R +D G + D K+D++RRDFTINALY + G Sbjct: 102 REIIEVTTFRGSHTDARSSRDASQSDTGVLLRDNVYGDIKSDAMRRDFTINALYYNPING 161 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +V+D+ GGL DL+NRTI+ IGD R ED +R+LR RF G NID + Sbjct: 162 EVLDFCGGLKDLKNRTIRIIGDPEERYKEDPVRLLRAARFAGKLG-FNIDPVTEKPIREH 220 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 L + S R++ E+ KL + + + + +FK +F Sbjct: 221 ADYLAHIPSARLFEEVLKLFMSGQATATLNKLRDYDLFKYLF 262 >gi|171464074|ref|YP_001798187.1| poly(A) polymerase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193612|gb|ACB44573.1| poly(A) polymerase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 466 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 9/208 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + + L + ++ IVGGAVRD + +S +D D+AT PD+V R+F K R Sbjct: 45 NAVKVTHTLQQAGYEAFIVGGAVRDLALGISPKDFDVATNATPDQVQRLFRKARLIGRRF 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRY----AKVVFTRDWKA---DSLRRDFTINA 126 I + T + +++T R+ L G + +++ W + D+ RRDFTINA Sbjct: 105 QIVHVTFFGKGHPEIIEVSTFRALLDNAGDHVAESGRILRDNVWGSQGEDAARRDFTINA 164 Query: 127 LYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 +Y D + V+DY GG+ D++ +T++ IGD R ED +R+LR RF A G + +D+ Sbjct: 165 MYYDPSSETVLDYHGGMADMQKKTLRMIGDPAKRYREDPVRMLRAVRFAAKTGFE-LDNA 223 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLL 213 +K K L + S R++ EI KLL Sbjct: 224 TRAPIVKLGKLLSDIPSARLFDEILKLL 251 >gi|269120810|ref|YP_003308987.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sebaldella termitidis ATCC 33386] gi|268614688|gb|ACZ09056.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sebaldella termitidis ATCC 33386] Length = 583 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 115/204 (56%), Gaps = 6/204 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++D+ IL +LNK + IVGG+VRD L+ +S +D D T I + +F K I Sbjct: 6 NNDVEFILDILNKN-GEGYIVGGSVRDILLGVSPKDYDFTTNIAYSTLKELFKDYNPKEI 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYA 129 +G + I +++I R D+ I +GR+ + V F + D RRDFTINA+ Sbjct: 65 GKH--FGILMIKINGIHYEIAKFRKDIGILNGRHPESVKFVDEIAEDLKRRDFTINAMAY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ +ID G +D++N+ I+F+GD RI ED LRILR RF + G +++++ A Sbjct: 123 SRKNGLIDLYNGSSDIKNKLIRFVGDPGLRIKEDALRILRAVRFVSALG-FDLETETKKA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 +K K LK +S ERI E +K+L Sbjct: 182 ILKNKLQLKKISKERIREEFSKIL 205 >gi|328473515|gb|EGF44358.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 220] Length = 387 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF +T Y T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIF-QTSYD---TGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ + Sbjct: 67 GTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEHFAL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G ++N+ IK +G A R ED LR++R RF + + +D + A + Sbjct: 127 QDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALESQIE 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ S ERI E K+++ K AI Sbjct: 186 LLQHTSVERITVEWLKMMKGKAAKRAI 212 >gi|89099892|ref|ZP_01172764.1| tRNA nucleotidyltransferase [Bacillus sp. NRRL B-14911] gi|89085450|gb|EAR64579.1| tRNA nucleotidyltransferase [Bacillus sp. NRRL B-14911] Length = 400 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 7/205 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG+VRD L+ + D+DIAT+ P + IF +T I +GT+ ++ Sbjct: 25 EAYFVGGSVRDYLLGKDISDVDIATSATPMEIKGIFPRT----ADVGIEHGTVIVLYDGD 80 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TT RS+ + R +KV F R D RRDF +N++ + G++ID GG D+ Sbjct: 81 SYEVTTFRSESDYEDFRRPSKVDFIRSLDEDLKRRDFRMNSMAMSKDGRIIDPFGGQEDI 140 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R++ I +G+ R ED LR++R RF + + ID + A + L+ ++ ER Sbjct: 141 RSKRIATVGNPLERFYEDALRMMRAVRFASQLSFQ-IDGETYEALVSEAYLLEKIAVERK 199 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGI 230 +E KLL +N A+ M + G+ Sbjct: 200 LAEFEKLLAGENSFMALKIMADTGL 224 >gi|255022876|ref|ZP_05294862.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J1-208] Length = 232 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 113/209 (54%), Gaps = 7/209 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF +T Y T I Sbjct: 9 LPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIF-QTSYD---TGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ Sbjct: 65 AHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEHF 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 125 TLHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALETQ 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAI 222 L+ S ERI E K+++ K AI Sbjct: 184 IALLQHTSVERITVEWXKMMKGKAAKRAI 212 >gi|46908138|ref|YP_014527.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes serotype 4b str. F2365] gi|254992071|ref|ZP_05274261.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J2-064] gi|73619794|sp|Q71YB0|CCA_LISMF RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|46881408|gb|AAT04704.1| polyA polymerase [Listeria monocytogenes serotype 4b str. F2365] Length = 393 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF +T Y T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIF-QTSYD---TGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ + Sbjct: 67 GTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEHFAL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G ++N+ IK +G A R ED LR++R RF + + +D + A + Sbjct: 127 QDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALESQIE 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ S ERI E K+++ K AI Sbjct: 186 LLQHTSVERITVEWLKMMKGKAAKRAI 212 >gi|254827210|ref|ZP_05231897.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL N3-165] gi|258599593|gb|EEW12918.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL N3-165] Length = 393 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 6/163 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T I Sbjct: 9 LPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ Sbjct: 65 AHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHF 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 + D G ++N+ IK +G A R ED LR++R RF + Sbjct: 125 ALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQ 167 >gi|325473481|gb|EGC76676.1| PolyA polymerase [Treponema denticola F0402] Length = 448 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 117/209 (55%), Gaps = 9/209 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD + +D DIAT P V +F KT IPT I++GT+ I+ + + + Sbjct: 25 LVGGAVRDWFLGKPCKDYDIATDAEPKEVQALFRKT----IPTGIAHGTVTILYKGEKIE 80 Query: 91 ITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 TT R + +DGR + + + R + D RRDFT+NA+ + G ++D G+ +++ Sbjct: 81 CTTFRCEADYSDGRRPQSINYVRSIEEDLSRRDFTMNAIAVSLKDGSIVDPFEGVKSIKS 140 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +TIK +G R ED LR +R RF + G K I+ + L A + + K +S ER Sbjct: 141 KTIKNVGSPLDRFGEDGLRPIRAIRFASQLGFK-IEEETLKAIPLSIEVCKKVSIERFRD 199 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 E K+L +++P+ ++ + + G+ K +FL Sbjct: 200 EFVKMLLSEHPIISLKLLEDTGLLK-VFL 227 >gi|282890004|ref|ZP_06298538.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500096|gb|EFB42381.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 423 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 11/228 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 DSD + +L L + +VGG+VRD L+ + +D DI+T+ P+ + ++F K+ + Sbjct: 19 DSDALYVLQRLRDAGYTAYLVGGSVRDLLIKQTPKDYDISTSAKPEEIKQLFQKS---CL 75 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALY 128 + I + K +++T RS D ++ W + D LRRDFTIN L+ Sbjct: 76 LIGRRFRLAHIRFKHKIIEVSTFRSG---DNEGDLILQDNQWGSPEEDVLRRDFTINGLF 132 Query: 129 ADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D +ID+VGG D++++ ++ IGD R +D +R++R +F A +G + ID+D Sbjct: 133 YDPANHSIIDFVGGWEDIKHKLLRTIGDPAIRFKQDPVRMIRLLKFRARFGFE-IDADSK 191 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 A ++ +K + S R+ EI ++LE+ + + M GGI + +F Sbjct: 192 KALVQCRKEIMKSSPARVLEEIFRMLESGSAASFFHLMAKGGILELLF 239 >gi|47096488|ref|ZP_00234080.1| polyA polymerase [Listeria monocytogenes str. 1/2a F6854] gi|224500255|ref|ZP_03668604.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes Finland 1988] gi|254899398|ref|ZP_05259322.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes J0161] gi|254912463|ref|ZP_05262475.1| polyA polymerase [Listeria monocytogenes J2818] gi|254936790|ref|ZP_05268487.1| polyA polymerase [Listeria monocytogenes F6900] gi|284802350|ref|YP_003414215.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5578] gi|284995492|ref|YP_003417260.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5923] gi|47015141|gb|EAL06082.1| polyA polymerase [Listeria monocytogenes str. 1/2a F6854] gi|258609385|gb|EEW21993.1| polyA polymerase [Listeria monocytogenes F6900] gi|284057912|gb|ADB68853.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5578] gi|284060959|gb|ADB71898.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5923] gi|293590445|gb|EFF98779.1| polyA polymerase [Listeria monocytogenes J2818] Length = 393 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 6/163 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T I Sbjct: 9 LPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ Sbjct: 65 AHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHF 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 + D G ++N+ IK +G A R ED LR++R RF + Sbjct: 125 ALHDPFSGQEAVKNKAIKAVGKASERFHEDALRMMRGVRFLSQ 167 >gi|254831494|ref|ZP_05236149.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 10403S] Length = 393 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 91/161 (56%), Gaps = 6/161 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ + Sbjct: 67 GTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHFAL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 D G ++N+ IK +G A R ED LR++R RF + Sbjct: 127 HDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQ 167 >gi|16803944|ref|NP_465429.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes EGD-e] gi|224501296|ref|ZP_03669603.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL R2-561] gi|255029019|ref|ZP_05300970.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes LO28] gi|73619795|sp|Q8Y5Z8|CCA_LISMO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|16411358|emb|CAC99983.1| cca [Listeria monocytogenes EGD-e] Length = 393 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 6/163 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T I Sbjct: 9 LPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ Sbjct: 65 AHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHF 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 + D G ++N+ IK +G A R ED LR++R RF + Sbjct: 125 ALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQ 167 >gi|32471688|ref|NP_864681.1| poly A polymerase [Rhodopirellula baltica SH 1] gi|32397059|emb|CAD72363.1| poly A polymerase [Rhodopirellula baltica SH 1] Length = 427 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 16/252 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + I++ L + + GG VRD+L+ +D D+AT P+ V +F K + Sbjct: 22 AEAVRIITELKDAGFVAVLAGGCVRDALLGRKPKDFDVATDATPESVREVFGK--RNTLA 79 Query: 73 TSISYGTIKIICRKKYF-----------DITTLRSDL-ITDGRYAKVVFTRDWKADSLRR 120 S+G I ++ + ++ T R+D +DGR V D +AD++RR Sbjct: 80 FGESFGVIGVLPPRSAVTEEPSAKLMPTEVATFRADGNYSDGRRPDSVTYGDAEADAMRR 139 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN ++ D + KVIDYVGG+ DL ++ IG A R ED LR+LR RF G Sbjct: 140 DFTINGMFYDLFESKVIDYVGGIQDLEKGHLRTIGKAVQRFEEDKLRMLRAVRFATTLG- 198 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +I+ A + ++S ERI +E+ +++ + + + + G+ ++ ++ Sbjct: 199 FSIEYKTFAAIQNHASDISVVSGERIGAEMRRVMTSSASDFGLETLVDTGLALHVWPQLR 258 Query: 240 EISLDQLSQVIE 251 ++ + S+ I+ Sbjct: 259 SMNWTEYSRAIQ 270 >gi|254852809|ref|ZP_05242157.1| polyA polymerase [Listeria monocytogenes FSL R2-503] gi|300763785|ref|ZP_07073782.1| polyA polymerase [Listeria monocytogenes FSL N1-017] gi|258606136|gb|EEW18744.1| polyA polymerase [Listeria monocytogenes FSL R2-503] gi|300515521|gb|EFK42571.1| polyA polymerase [Listeria monocytogenes FSL N1-017] Length = 393 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N + D+DIAT+ P+ V IF +T Y T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRMISDVDIATSAFPEEVKEIF-QTSYD---TGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ + Sbjct: 67 GTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEHFAL 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G ++N+ IK +G A R ED LR++R RF + + +D + A + Sbjct: 127 QDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALESQIE 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ S ERI E K+++ K AI Sbjct: 186 LLQHTSVERITVEWIKMMKGKAAKRAI 212 >gi|217963943|ref|YP_002349621.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Listeria monocytogenes HCC23] gi|254813696|sp|B8DC21|CCA_LISMH RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|217333213|gb|ACK39007.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Listeria monocytogenes HCC23] gi|307571487|emb|CAR84666.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Listeria monocytogenes L99] Length = 393 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF +T Y T I Sbjct: 9 LPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIF-QTSYD---TGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ Sbjct: 65 AHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEHF 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 125 ALHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALESQ 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAI 222 + L+ S ER+ E K+++ K AI Sbjct: 184 IELLQHTSVERMTVEWIKMMKGKAAKRAI 212 >gi|298244031|ref|ZP_06967838.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] gi|297557085|gb|EFH90949.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] Length = 458 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 7/217 (3%) Query: 31 IVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTR-YKVIPTSISYGTIKIICRKK- 87 +VGG VRD L+ D D+AT LP+ + R+ + TR V+ +GT+++I Sbjct: 21 MVGGTVRDVLLQRGESADADLATDALPEEIKRLVAPTRPSAVVLVGERFGTVRLIYESNN 80 Query: 88 YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDL 145 +ITT RS+ + R +V F D D RRDFTINAL D G +ID G DL Sbjct: 81 IIEITTFRSERYNPESRKPEVCFGTDLAEDLQRRDFTINALARDPLNGSIIDLFAGRQDL 140 Query: 146 RNRTIKFIG-DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 I+ +G + R ED LR+LR RF A + I+S + + L+ +S ER Sbjct: 141 EEHIIRAVGNEPDKRFDEDPLRLLRAIRFAAQL-DFEIESSTWQSIKRQANKLQKISRER 199 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I E+NKLL + +P + + G+ + I +V E+ Sbjct: 200 IRDEMNKLLVSAHPAKGLDLLVEAGLMEYIMPEVMEL 236 >gi|327440755|dbj|BAK17120.1| tRNA nucleotidyltransferase/poly(A) polymerase [Solibacillus silvestris StLB046] Length = 395 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 11/190 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGGAVRD + D+DIAT+ +P+ + IFS+T I I++GT+ ++ + Sbjct: 28 EAFIVGGAVRDYYLKKENNDVDIATSAMPEEIQTIFSQT----IDVGIAHGTVIVLDCGE 83 Query: 88 YFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++TT R++ +D R V F R+ + D RRDFT+NA+ Q G+ IDY G + Sbjct: 84 PIEVTTYRTESTYSDHRRPDTVEFVRNLQEDLKRRDFTMNAMALSQSGEYIDYYNGRQHI 143 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLVASIKAKKGLKILSSE 203 ++ I +G+ R ED LR+LR RF A H+ +I+ + A K ++ ++ E Sbjct: 144 DSKVICAVGEPDQRFEEDALRMLRAVRFAAQLHF---SIEENTFEAIRKKAASIEYVAIE 200 Query: 204 RIWSEINKLL 213 RI E++K+ Sbjct: 201 RIQVELSKIF 210 >gi|260654684|ref|ZP_05860174.1| polyA polymerase family protein [Jonquetella anthropi E3_33 E1] gi|260630700|gb|EEX48894.1| polyA polymerase family protein [Jonquetella anthropi E3_33 E1] Length = 435 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 163/378 (43%), Gaps = 39/378 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG +RD+LM DID+AT P V +F +Y + T + +G++ ++ + Sbjct: 24 LVGGYLRDTLMGRKPGDIDLATDAKPKDVTALFG-AKY-TLETGVKHGSVTVMSDGLPIE 81 Query: 91 ITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 +TT RS+ G YA V F + D RRDFT+NA+ + + +ID VGG D Sbjct: 82 VTTFRSE----GAYADKRHPNSVSFLTNVTEDLRRRDFTVNAMAWNPEHGLIDPVGGRED 137 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ R I+ +G+ R ED LRILR R FA +ID A + L+ +S R Sbjct: 138 LQRRRIRCVGNPDERFAEDGLRILRALR-FASLLNFSIDPRADEALNRFTSSLENVSVPR 196 Query: 205 IWSEINKLLEAKNPLNAIV-HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW----K 259 +W E++ + P H+ +F + ++ + + A W Sbjct: 197 VWHELSLFFQGVRPGRLFASHLP---VFAAVIPELAFLCDNSPLSFQAATDAARWLDAVP 253 Query: 260 IDSLLRFIVLIS--WQDKKSILSMAK-----KFSLPREIRYFLISFFNCNFNQKTLSIP- 311 D LR L S D++ +AK + R R + S + L P Sbjct: 254 QDLPLRLAALFSAVAPDQQEAAFLAKSVLEDRLQTDRNTRRAVQSLL--KYPAIALKTPD 311 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTG 367 E + L G + + L + L + L+ Q+ ++LS ++ PL + G Sbjct: 312 EARALLKAVGRETALDWLGLVLPI----LSQQEGEGTSRILSAVLECNLPLDVSQLAVKG 367 Query: 368 DDVVKYGIPPGKKVGNIL 385 D++ G PG +G IL Sbjct: 368 SDLIDLGCLPGPLIGEIL 385 >gi|320120312|gb|EFE28537.2| polyA polymerase [Filifactor alocis ATCC 35896] Length = 444 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 7/223 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I +L + + +VGG VRD +N D D+AT+ P ++ + + + T + Sbjct: 12 IFQILQENGHQVYLVGGIVRDYFLNRENYDFDMATSATPTEMISLLK--HFDLDATDSRF 69 Query: 78 GTIKI-ICRKKYFDITTLRSDLITD-GRY-AKVVFTRDWKADSLRRDFTINALYADQQGK 134 GTI+I + K +ITT R + D RY K+ F D D RRDFT+NAL + +G Sbjct: 70 GTIRIKVAGKNDIEITTFRMEEYEDETRYPTKIDFVNDILIDLKRRDFTMNALAWNHKG- 128 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GL D+R IK IG R LED LR+LR RF A + ID D A ++ Sbjct: 129 LIDCFHGLEDIRQSCIKTIGVPTKRFLEDPLRMLRAIRFSAQLDFR-IDEDSYQAIVENA 187 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + LS E + +E K+L + NP AI +++ I + IF D Sbjct: 188 YLISRLSMESMRNEFVKILISNNPNYAIKCLFDSNIVEYIFFD 230 >gi|115379393|ref|ZP_01466497.1| CCA-adding enzyme [Stigmatella aurantiaca DW4/3-1] gi|115363600|gb|EAU62731.1| CCA-adding enzyme [Stigmatella aurantiaca DW4/3-1] Length = 183 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H+ ++++L L + + +VGG VRD L ++ +D D+A++ LP V F Sbjct: 7 HRADIPRPILDVLHRLRELGFAAFLVGGCVRDILRGVAPKDFDVASSALPQEVQGAFK-- 64 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTI 124 KVIPT I +GT+ ++ + ++TT RS D + R + V F RD D RRDFTI Sbjct: 65 --KVIPTGIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLSRRDFTI 122 Query: 125 NALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NA+ D G+V +D GG+ DL+ I+ + R ED LR +R RF A G Sbjct: 123 NAMAYDPVGQVLVDPFGGMEDLQAHLIRCVRSPLERFSEDGLRPMRAVRFAAVLG 177 >gi|326793190|ref|YP_004311011.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium lentocellum DSM 5427] gi|326543954|gb|ADZ85813.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium lentocellum DSM 5427] Length = 455 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 16/230 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I I+ ++ ++ IVGG VRD LMN D DI T+ P+ + RIF +T T Sbjct: 12 EAIQIIQMIEAVGYEAYIVGGCVRDLLMNRQPHDWDITTSAKPEEIKRIFKRT----YDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINAL 127 I +GT+ +I ++F++TT R +G Y KV F D D RRDFT+NA+ Sbjct: 68 GIEHGTVTVILNTEHFEVTTYR----IEGEYKDFRRPDKVSFVDDITLDLSRRDFTMNAI 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +D G D++ + I+ + A R ED LRILR RF A G + I+++ L Sbjct: 124 AYHPDRGFVDPYEGQRDIKRQCIRSVRCAKERFTEDALRILRAVRFSAQLGFQ-IETETL 182 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + L +S ERI E K+ + P I +Y + + IF D Sbjct: 183 KGIEACRALLTHISKERIRDEFLKICVSSRP-GHIDLLYQLKLLEYIFPD 231 >gi|116623706|ref|YP_825862.1| metal dependent phosphohydrolase [Candidatus Solibacter usitatus Ellin6076] gi|116226868|gb|ABJ85577.1| metal dependent phosphohydrolase [Candidatus Solibacter usitatus Ellin6076] Length = 422 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 17/229 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRK 86 ++ +VGG VRD L+ +D DIAT PDR+M +F P+S G +I + Sbjct: 7 QAYLVGGCVRDHLLGCKPKDYDIATDARPDRIMDLF--------PSSGRVGAHFGVILVR 58 Query: 87 KYFD---ITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVG 140 FD + T RSD DGR+ +V F D + D LRRDFTIN L D G+V+D+V Sbjct: 59 DVFDQVEVATFRSDHDYLDGRHPEQVRFECDPREDVLRRDFTINGLMLDPDTGRVLDFVD 118 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G DL+ ++ IGD + R ED+LR+LR RF A G I+ A + + + Sbjct: 119 GQGDLKRGIVRAIGDPYARFREDHLRLLRAVRFAARLG-FEIEPATFDAIRRDHALILKV 177 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ 248 + ERI E+ ++L + G+ ++ +V + +DQ Q Sbjct: 178 AMERIREELVRILTEGGARRGFELLDAAGMLADLLPEVAAMKGVDQPPQ 226 >gi|153854755|ref|ZP_01995989.1| hypothetical protein DORLON_01987 [Dorea longicatena DSM 13814] gi|149752662|gb|EDM62593.1| hypothetical protein DORLON_01987 [Dorea longicatena DSM 13814] Length = 396 Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 72/191 (37%), Positives = 103/191 (53%), Gaps = 23/191 (12%) Query: 55 LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRD 112 +P+ +F KT T I +GTI ++ + +++TT R D D R+ K V FTR+ Sbjct: 1 MPEETKALFDKT----FDTGIEHGTITVLLNHEGYEVTTYRIDGKYEDSRHPKEVTFTRN 56 Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 K D LRRDFTINA+ + + ++D GG+ DL I+ +G+A R ED LRILR R Sbjct: 57 LKEDLLRRDFTINAMAYNDKDGIVDIFGGMQDLEKHMIRCVGNARERFSEDALRILRGVR 116 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKIL-------SSERIWSEINKLLEAKNPLNAIVHM 225 F A G + ID + K+G+K+L S+ERI E+ K+L + P I Sbjct: 117 FAAQLGFE-IDEE-------TKEGMKLLAPTLENISAERIQVELVKMLTSDRP-ELIRTA 167 Query: 226 YNGGIFKEIFL 236 Y GI K +FL Sbjct: 168 YELGITK-VFL 177 >gi|221194633|ref|ZP_03567690.1| cca-adding enzyme [Atopobium rimae ATCC 49626] gi|221185537|gb|EEE17927.1| cca-adding enzyme [Atopobium rimae ATCC 49626] Length = 473 Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 9/205 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + L +L ++ IVGG VRD+L+ + DIDI T+ ++ + Y V T I Sbjct: 28 VCALEILESAGFEAWIVGGWVRDALLGSATHDIDITTSAHWEQTAETYRAAGYVVHETGI 87 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +ITT R++ +D R+ +V F D RRDFT+NA+ + Sbjct: 88 KHGTVTVVVNGHPLEITTYRTEGTYSDHRHPDEVCFVDSIDKDLARRDFTVNAMAFHPRR 147 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVAS 190 ++D G DL+ R I+ +GDA R ED LR+LR RF G EK +D L AS Sbjct: 148 GLLDPYHGQYDLQQRCIRAVGDAQSRFEEDALRVLRAIRFACKLGFSIEKKT-ADALSAS 206 Query: 191 IKAKKGLKILSSERIWSEINKLLEA 215 L ++ ERI +E+ +++A Sbjct: 207 ASR---LAFVAQERIGNEMCAIMDA 228 >gi|315303843|ref|ZP_07874330.1| CCA-adding enzyme [Listeria ivanovii FSL F6-596] gi|313627786|gb|EFR96432.1| CCA-adding enzyme [Listeria ivanovii FSL F6-596] Length = 393 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 6/163 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF+ T T I Sbjct: 9 LPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFTST----YDTGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ + +Y+++TT R++ + R ++V F R + D LRRDFT+NA+ D Sbjct: 65 AHGTVTVRENNEYYEVTTFRTEGAYEDYRRPSEVTFIRSLEEDLLRRDFTMNAIAMDGDF 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 + D G +R + I+ +G A R ED LR++R RF + Sbjct: 125 DLHDPFLGQISIRKKEIRAVGKASERFHEDALRMMRAIRFLSQ 167 >gi|284049150|ref|YP_003399489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidaminococcus fermentans DSM 20731] gi|283953371|gb|ADB48174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidaminococcus fermentans DSM 20731] Length = 481 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 5/210 (2%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRK 86 ++ +VGGAVRD L+ + D D+ T P+ ++R V+ ++G + + + Sbjct: 22 QAHVVGGAVRDMLLGRTPDDYDVVTNARPEEIIRTAEDAGIPVVSELGQNFGVVILRVER 81 Query: 87 KYFDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 ++ R++ G R ++V + + + D RRDFTINAL DQ+G + D GL+ Sbjct: 82 HGVEVAAYRNETYGSGDAHRPSEVWYCKTLEEDLSRRDFTINALAVDQEGHITDCFHGLD 141 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DLR R ++ +GD R ED LR+ R RF G D L A + + + LS E Sbjct: 142 DLRGRVLRTVGDPDRRFSEDALRMFRACRFVGQLGFAP-DPAILPAIGRNLQKVPGLSLE 200 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 R+ +E+NKLL + M G+ E Sbjct: 201 RVRTELNKLLMGTYAGEGMDLMVKSGLAAE 230 >gi|300791145|ref|YP_003771436.1| poly(A) polymerase [Amycolatopsis mediterranei U32] gi|299800659|gb|ADJ51034.1| poly(A) polymerase [Amycolatopsis mediterranei U32] Length = 478 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 124/264 (46%), Gaps = 29/264 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PDRV++I S V I++GT+ + + + Sbjct: 35 LVGGSVRDALLGRRSGDLDFTTDARPDRVLKIVSGWGDAVWDVGIAFGTVGVTKKGMQLE 94 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNR 148 ITT R+D GR +V F + D LRRDFT+NA+ D K ID GL+ LR R Sbjct: 95 ITTFRADSYDRVGRNPEVTFGDSIEGDLLRRDFTVNAMAVDLASKTFIDPHDGLSALRER 154 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAH----YGEKNIDSDGLVASIKAKKGLKILSSER 204 + +D LR+LR RF A + +D A + + +++ER Sbjct: 155 VLDTPATPQESFADDPLRMLRAARFAAQLDFAAAPRVVD-----AMTSMAEEIDRITAER 209 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQ 248 + +E++KLL A +P + + + G+ + DV + SL L+Q Sbjct: 210 VQAELSKLLLAADPRPGLELLVDTGLADRVLPEVAGMRLAIDEHHQHKDVYQHSLTVLAQ 269 Query: 249 VIEAEQVFE--WKIDSLLRFIVLI 270 I+ E E + D +LR L+ Sbjct: 270 AIDLESSHEPTSEPDLILRLAALL 293 >gi|322437026|ref|YP_004219238.1| metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX9] gi|321164753|gb|ADW70458.1| metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX9] Length = 456 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 113/243 (46%), Gaps = 17/243 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L ++ GG VRD L+ + +D D+AT+ PD++ +F +T + + Sbjct: 11 IVQTLRSAGHQAFFAGGCVRDLLLGKTPKDFDVATSATPDQITALFPRT----LQVGAHF 66 Query: 78 GTI----KIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYAD- 130 G I + ++ T R D +DGR V F+ D + D LRRDFTIN + D Sbjct: 67 GVILVQMDVEGEPTSTEVATFRHDGAYSDGRRPDAVRFSTDPREDVLRRDFTINGMLLDP 126 Query: 131 ----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 ++D+VGG NDL + I+ IG R ED LR+LR RF A ID + Sbjct: 127 FAEGSDNAILDFVGGRNDLAVKIIRTIGSPDTRFEEDKLRMLRAVRFAARLSFA-IDPNT 185 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQ 245 A + + +S+ERI E+ +L N A +Y G+ I + + I + Q Sbjct: 186 AAAITRHAAEIFQVSNERIRDELTLMLTEGNAHRAFELLYQTGLLHHILPEAERMIGVQQ 245 Query: 246 LSQ 248 Q Sbjct: 246 PPQ 248 >gi|116873340|ref|YP_850121.1| tRNA CCA-pyrophosphorylase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461247|sp|A0AK10|CCA_LISW6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116742218|emb|CAK21342.1| polyA polymerase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 393 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 7/209 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG+VRD L+ ++ D+DIAT+ P+ V IF T T I Sbjct: 9 LPVLQKLTTAGFEAYFVGGSVRDYLLCRTISDVDIATSAFPEEVKEIFPST----YDTGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ + K+ +++TT R++ + R ++V F R K D RRDFT+NA+ D+ Sbjct: 65 AHGTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLKEDLQRRDFTMNAIAMDEHF 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ D G ++N+ IK +G A R ED LR++R RF + + ++D + A K Sbjct: 125 ELHDPFFGQLAIQNKEIKAVGKASERFQEDALRMMRAVRFLSQL-DFHLDKETENALQKN 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAI 222 L+ S ERI E KL++ AI Sbjct: 184 IALLQHTSVERITVEWVKLMKGPAVKRAI 212 >gi|27573943|pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme gi|27573944|pdb|1MIV|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme gi|27573945|pdb|1MIW|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme In Complex With Atp gi|27573946|pdb|1MIW|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme In Complex With Atp Length = 404 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 110/219 (50%), Gaps = 7/219 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + + VGGAVRD L+ + D+DIAT+ LP+ V IF KT I Sbjct: 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVXAIFPKT----IDV 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GT+ ++ + K +++TT ++D + R V F R + D RRDFT NA+ D+ Sbjct: 63 GSKHGTVVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTXNAIAXDE 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GG +R R I+ +G+A R ED LR R RF + G + D A + Sbjct: 123 YGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRXXRAVRFVSELG-FALAPDTEQAIV 181 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + L +S ER E KLL A+ + G+ Sbjct: 182 QNAPLLAHISVERXTXEXEKLLGGPFAARALPLLAETGL 220 >gi|308234520|ref|ZP_07665257.1| metal dependent phosphohydrolase [Atopobium vaginae DSM 15829] gi|328944115|ref|ZP_08241580.1| polyA polymerase family protein [Atopobium vaginae DSM 15829] gi|327492084|gb|EGF23858.1| polyA polymerase family protein [Atopobium vaginae DSM 15829] Length = 483 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 7/201 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL++L + IVGG VRD +M DIDIAT+ + R+F + V T Sbjct: 29 IRILTILESHGWSAWIVGGWVRDMVMRQPSHDIDIATSASWQQSERLFCDSGCSVFRTGC 88 Query: 76 SYGTIKIICRKKYFDITTLRSDLI-TDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++ F++TT RS+ +D R+ V F + D RRDFT NAL + Sbjct: 89 KHGTITVVLDHYAFEVTTYRSETTYSDHRHPDSVTFVDSIQKDLARRDFTCNALAYHHER 148 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLVASI 191 K++D GG++D+ ++ +G A R ED LR+LR RF A H+ +D D A Sbjct: 149 KLLDVYGGIDDIHAHILRCVGKADVRFAEDALRMLRALRFQATLHFV---LDRDIQTALD 205 Query: 192 KAKKGLKILSSERIWSEINKL 212 + L ++ ERI SEI KL Sbjct: 206 RHYLELLRIAPERIGSEIIKL 226 >gi|237749035|ref|ZP_04579515.1| poly(A) polymerase [Oxalobacter formigenes OXCC13] gi|229380397|gb|EEO30488.1| poly(A) polymerase [Oxalobacter formigenes OXCC13] Length = 463 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 14/232 (6%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTSI 75 L N+G D + IVGGAVRD L+ L +D D+AT P++V R+F + R++++ Sbjct: 48 LQNEGYD-AFIVGGAVRDLLLGLKPKDFDVATNATPEQVKRLFKRAFLIGRRFQIVHVMF 106 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 I++ + D ++ + GR + D+ RRDFTINA+Y + +V Sbjct: 107 GQDLIEVTTFRGASDKPAIKDE---SGRLLRDNNFGTQSEDAARRDFTINAMYYNPANQV 163 Query: 136 I-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + DY GG+ DLR++T++ IG+ R ED +R+LR RF A G + G A I A Sbjct: 164 LLDYHGGIKDLRSKTLRVIGNPEQRYREDPVRMLRIVRFAAKLGFSIDKTTG--APIAAL 221 Query: 195 KGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L + S R++ E+ KLL + + ++ + + G+ + + L + +++L+Q Sbjct: 222 APLMNNVPSARLFDEMLKLLMSGHSMSCLKELRARGLHQGL-LPLLDVALEQ 272 >gi|289642446|ref|ZP_06474591.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia symbiont of Datisca glomerata] gi|289507705|gb|EFD28659.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia symbiont of Datisca glomerata] Length = 539 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 116/220 (52%), Gaps = 8/220 (3%) Query: 31 IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGG+VRD+L+ S D+D AT P++++ I V I++GT+ ++ Sbjct: 41 LVGGSVRDALLGRSGPSDADLDFATDARPEQILDIARAWADGVWEAGIAFGTVGLVRSGV 100 Query: 88 YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDL 145 F++TT R++ R V + + D +RRDFT+NA+ G + ID GGL DL Sbjct: 101 RFEVTTYRTEAYDRTSRNPTVAYGDTLEGDLVRRDFTVNAMAVSVPGHEFIDLFGGLGDL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 + ++ G +D LRILR RF A G + LVA+++++ LKI+S ER Sbjct: 161 ARKVLRTPGSPEASFDDDPLRILRAARFEAQLGLVPVPE--LVAAMRSRTPRLKIVSVER 218 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I E+ KL+ A +P+ + + + G+ + ++ + ++ Sbjct: 219 IRDELRKLMVAADPVAGLTRLVDVGVADIVLPELPALRME 258 >gi|118594498|ref|ZP_01551845.1| poly(A) polymerase [Methylophilales bacterium HTCC2181] gi|118440276|gb|EAV46903.1| poly(A) polymerase [Methylophilales bacterium HTCC2181] Length = 411 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 14/205 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 I I+ +L K ++ IVGGA+RD LMN + +D DIAT P+++ +F ++ R+K+ Sbjct: 32 IEIIKVLKKNNYEAYIVGGAIRDILMNKNPKDFDIATDATPEQIKLLFRRSRIIGRRFKL 91 Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + G I++ R K + +R+ + D Y + K D+ RRDFT N++Y Sbjct: 92 VHVMDGRGIIEVSTFRAKPHNKEVMRNGVTKDNEYGTL------KEDAERRDFTCNSIYY 145 Query: 130 DQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + KV ID GG+ D+R + + IGD R ED +RILR RF A ID + L Sbjct: 146 NPLTKVLIDLYGGVKDIRAKKLAMIGDPKKRFDEDSVRILRAIRFSAKLNL-TIDKNILE 204 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A K L+ + R++ EI KL Sbjct: 205 AIESKKSQLQSIPYSRLFDEIMKLF 229 >gi|269129150|ref|YP_003302520.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermomonospora curvata DSM 43183] gi|268314108|gb|ACZ00483.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermomonospora curvata DSM 43183] Length = 490 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 116/218 (53%), Gaps = 5/218 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ +D+D+ T P++V+++ + I +GT+ + Sbjct: 47 ALVGGPVRDALLGRPGKDVDLTTDATPEQVLQLVEGWADAIWTIGIEFGTVGLRKGDLQL 106 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 +ITT RS+ R +V + + D RRDF +NA+ A G + +D GGL DLR Sbjct: 107 EITTYRSESYDPKSRKPEVSYGKSLTEDLARRDFAVNAMAARLPGHEFVDPFGGLGDLRR 166 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIW 206 +T++ G +D LR++R RF A G + +VA+++ G ++I+S+ERI Sbjct: 167 KTLRTPGRPEDSFNDDPLRMMRAARFAAQLG--FTVAPEVVAAMRDMAGRIEIVSAERIR 224 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E++KL+ A P + + + G+ + + ++ ++ L+ Sbjct: 225 DELSKLICAPRPRAGLTLLVDTGLAEHVLPELPKLRLE 262 >gi|269838464|ref|YP_003320692.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sphaerobacter thermophilus DSM 20745] gi|269787727|gb|ACZ39870.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sphaerobacter thermophilus DSM 20745] Length = 478 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 107/217 (49%), Gaps = 4/217 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 +VGG+VRD L+ V D+D AT+ P+ + + T +GT+ + Sbjct: 47 LVGGSVRDLLLGQPVTDLDFATSAEPELTKAAGAAAGADSVYTVGEQFGTVGFVFDGVSV 106 Query: 90 DITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLNDLRN 147 +ITT R + T R KV D D RRDFTINA+ D + G V D GGL+DL Sbjct: 107 EITTYREEHYPTPDRRPKVRLGTDLVGDLSRRDFTINAIAVDARDGTVHDPFGGLDDLER 166 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R I+ +GD R ED LRILR RF A + +D L A L+ +S ERI + Sbjct: 167 RIIRAVGDPKARFAEDPLRILRAARFAAQL-DFRVDRRTLAAMRAMGPQLERISRERIAA 225 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+N+LL A + ++ + + + +V ++ D Sbjct: 226 ELNRLLIAPAAARGLALLHETDLLRWVLPEVVPMAED 262 >gi|262037488|ref|ZP_06010947.1| tRNA adenylyltransferase [Leptotrichia goodfellowii F0264] gi|261748418|gb|EEY35798.1| tRNA adenylyltransferase [Leptotrichia goodfellowii F0264] Length = 586 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +SD+ IL LN +VGGAVRD + D D AT I +++ IF K + Sbjct: 6 NSDVKFILEQLNNN-GTGFLVGGAVRDLITGKEPYDYDFATDIEYEKLKEIFKNFSPKEV 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYA 129 +G + I K+++I R + + + R+ K V F + D RRDFT+NA+ Sbjct: 65 --GAHFGILIIKVNGKHYEIAKFRKETGVLNSRHPKSVKFIDTIEEDLSRRDFTVNAMAY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ +ID GG D+ NR I+F+G RI ED LRI+R FRF + G K +D A Sbjct: 123 NEIRGLIDLFGGKKDIENRIIRFVGKPKIRIEEDALRIMRAFRFISQLGFK-LDKKTSEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 KK L +S ERI++E++++L A+ M G+ + I Sbjct: 182 IYLKKKFLNKISKERIFTELSRILTGPCMKRALRMMKKCGVLEMI 226 >gi|258511621|ref|YP_003185055.1| tRNA cytidylyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478347|gb|ACV58666.1| tRNA cytidylyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 407 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 7/202 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++ +L + +VGGAVRD L+ + D+D+AT+ P+ V +F++T + T I Sbjct: 9 EVMEVLQNAGYAAYLVGGAVRDLLLGRTPSDLDVATSARPEDVRSLFART----LDTGIR 64 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGK 134 +GT+ + + ++TT R++ DGR V F D +AD RRDFTINA+ D G+ Sbjct: 65 HGTVSVWSAGCWIEVTTFRAEGPYGDGRRPDFVRFVDDVEADLARRDFTINAMALDLDGR 124 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G DL R ++ +GD R ED LR++R RF + D A + Sbjct: 125 LVDPFDGRGDLARRLLRAVGDPVARFREDGLRLVRAVRFSVQL-DLTCDPATEAALAETA 183 Query: 195 KGLKILSSERIWSEINKLLEAK 216 ++ ++ ERI E+ +L A Sbjct: 184 DAIRPIALERIGRELVRLSHAP 205 >gi|295696304|ref|YP_003589542.1| Polynucleotide adenylyltransferase region [Bacillus tusciae DSM 2912] gi|295411906|gb|ADG06398.1| Polynucleotide adenylyltransferase region [Bacillus tusciae DSM 2912] Length = 422 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 7/198 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L ++ VGG VRD L+ +D+DIAT P+ VM++F + +PT + Sbjct: 15 EVIAALTDAGWEAVYVGGGVRDLLLGRGAKDVDIATAAPPEAVMKVFPEA----VPTGLP 70 Query: 77 YGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ I + ++TT R + R +V +T + D RRDFTINA+ + + Sbjct: 71 FGTVTIPRQGIGVEVTTYRREGGYRDRRRPTRVEYTAKLEEDLSRRDFTINAMAMSRGFR 130 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GGL DL I+ +GD R ED LR++R R A ++D ++A K Sbjct: 131 LIDPFGGLGDLLAGQIRAVGDPAQRFAEDALRMVRALRLAAEL-SFDLDPSVVLALNKQM 189 Query: 195 KGLKILSSERIWSEINKL 212 K ++ ++ ER+ E +L Sbjct: 190 KDVRHVAVERVLGEWQRL 207 >gi|288921203|ref|ZP_06415489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EUN1f] gi|288347410|gb|EFC81701.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EUN1f] Length = 491 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGG+VRDSL+ S D+D T P+RV+ I I++GT+ + R Sbjct: 41 LVGGSVRDSLLGRAQSAPDLDFTTDARPERVLEITRGWAEATWEAGIAFGTVGLARRGVR 100 Query: 89 FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLR 146 F++TT RS+ R V + D +RRDFT+NA+ G +D GG+ DL Sbjct: 101 FEVTTYRSETYDRTSRNPTVTYGDGLHGDLVRRDFTVNAMAVSVPGHDFVDLFGGMADLA 160 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-KGLKILSSERI 205 ++ G +D LRILR RF A G + LVA+++++ + +KI+S ER+ Sbjct: 161 RGVLRTPGVPEASFDDDPLRILRAARFEAALGLTPVPE--LVAAMRSRAERIKIVSPERV 218 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGI 230 E+ KL+ + NP+ + + + GI Sbjct: 219 RDELRKLIASPNPIAGLERLVDVGI 243 >gi|303228900|ref|ZP_07315711.1| HDIG domain protein [Veillonella atypica ACS-134-V-Col7a] gi|302516426|gb|EFL58357.1| HDIG domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 470 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 111/203 (54%), Gaps = 8/203 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L++L + ++ I+GGAVRD LM++ D DI T+ P++V+ + + T I Sbjct: 5 IRLLTILEEAGFEAFIIGGAVRDMLMHVKPHDFDIVTSARPEQVISVLGDANIET--TGI 62 Query: 76 ---SYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 S+G + I K++++ T R + R +V++ + D RRDFT+N + + Sbjct: 63 IGKSFGVVVAIVDGKHYEVATYRKERYGADSHRPEEVIYADTLEEDVKRRDFTVNGMAMN 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +VID VGG D++++ ++ IG+ R ED LR+ R RF A + D L A Sbjct: 123 RYKEVIDLVGGRRDIKHKVLRTIGNPEERFQEDALRLFRACRFVAKL-DFLPDKSLLEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 KA + LS ER+ +E+++LL Sbjct: 182 PKAFHRVSGLSLERVRNELDRLL 204 >gi|127514059|ref|YP_001095256.1| poly(A) polymerase [Shewanella loihica PV-4] gi|126639354|gb|ABO24997.1| poly(A) polymerase [Shewanella loihica PV-4] Length = 480 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 110/233 (47%), Gaps = 16/233 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 67 NAIKVLYRLHKSGFKAYLVGGGVRDILLGLEPKDFDVVTNATPEEIKKLFRNCRL----V 122 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRY-----AKVVFTRD-----WKADSLRRDFT 123 + I+ + ++ TLR + G A+ RD D+ RRDFT Sbjct: 123 GRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKVNAEGRLLRDNVYGTIDEDAERRDFT 182 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GGL DL +RT++ IGD R ED +R+LR RF G +I Sbjct: 183 VNALYYDISDFSIHSYGGGLQDLESRTLRLIGDPQKRYREDPVRMLRAVRFATKLG-MSI 241 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 D + LK + + R++ E+ KL A N V M + G+F +F Sbjct: 242 DKAAAQPISELAPLLKDIPAARMYEEVLKLFFAGQAQNNYVMMRDFGLFAPLF 294 >gi|260222990|emb|CBA33107.1| hypothetical protein Csp_B17390 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 531 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 35/260 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D IN++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F + Sbjct: 42 DERAINVVRTLKQAGFEAYVVGGAVRDLLVGLRPKDFDVATNATPEQVKGLFRRAFIIGR 101 Query: 67 RYKVIPTSISYG------TIKIICRKKYFDIT----------TLRSDLI-------TDGR 103 R++++ + YG I++ + Y D T +S+L + GR Sbjct: 102 RFRIV--HVVYGRGREHEVIEVSTFRAYLDNAAAEQVAGNERTSKSELAGMKHAVDSTGR 159 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + + D++RRDFTINA+Y D + + V+DY GL D ++RT++ IGDA R E Sbjct: 160 VLRDNVWGPQEEDAVRRDFTINAMYYDPETQIVVDYHNGLKDSKSRTLRMIGDAATRYRE 219 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A + A +K++K L + R++ E+ KLL+ + L Sbjct: 220 DPVRIIRAVRFAAKLSPLGFKLEPKTAGPLVKSQKLLNDVPQSRLFDEMLKLLQTGHALA 279 Query: 221 AIVHMYNGGIFKEIF--LDV 238 +I + G+ I+ LDV Sbjct: 280 SIEQLKVLGLATGIYPLLDV 299 >gi|262369854|ref|ZP_06063181.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter johnsonii SH046] gi|262314893|gb|EEY95933.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter johnsonii SH046] Length = 486 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 128/235 (54%), Gaps = 13/235 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P +V +F + Sbjct: 15 SYILDVIDALTKAGYEAYIVGGGVRDMMLGLNPKDFDAVTNATPSQVKEVFGRRCRI--- 71 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ + A+ + RD W + D RRDF+INA+ Sbjct: 72 IGRRFELAHVYSGRELVEVATFRAPPKKEVTSAQGMILRDNNWGTIEQDFARRDFSINAM 131 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ ++D++N+T++ +GDA R ED +R+LR RF A G +ID Sbjct: 132 YYQPRKGVVLDFCHAVDDIKNKTLRLLGDAQTRFEEDPVRMLRTLRFAAKLG-FSIDQQI 190 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY-NGGIFKEIFLDVQ 239 L V +++ + L+ +S R++ E KL + LN ++ M + GI+K++F D+Q Sbjct: 191 LDVFTLEMTQLLRDVSPHRLYDESQKLFTMGH-LNRVLPMLIDFGIWKQLFADIQ 244 >gi|303231232|ref|ZP_07317970.1| HDIG domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302514139|gb|EFL56143.1| HDIG domain protein [Veillonella atypica ACS-049-V-Sch6] Length = 470 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 111/203 (54%), Gaps = 8/203 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I +L++L + ++ I+GGAVRD LM++ D DI T+ P++V+ + + T I Sbjct: 5 IRLLTILEEAGFEAFIIGGAVRDMLMHVKPHDFDIVTSARPEQVISVLGDANIET--TGI 62 Query: 76 ---SYGTIKIICRKKYFDITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 S+G + I K++++ T R + R +V++ + D RRDFT+N + + Sbjct: 63 IGKSFGVVVAIVDGKHYEVATYRKERYGADSHRPEEVIYADTLEEDVKRRDFTVNGMAMN 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +VID VGG D++++ ++ IG+ R ED LR+ R RF A + D L A Sbjct: 123 RYKEVIDLVGGRRDIKHKVLRTIGNPTERFQEDALRLFRACRFVAKL-DFLPDKSLLEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 KA + LS ER+ +E+++LL Sbjct: 182 PKAFHRVSGLSLERVRNELDRLL 204 >gi|257063620|ref|YP_003143292.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia heliotrinireducens DSM 20476] gi|256791273|gb|ACV21943.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia heliotrinireducens DSM 20476] Length = 467 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 18/227 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D +I+ L ++ + G VRD LM D+DI+T+ + + +FS +KV T Sbjct: 12 DAASIVDALEAAGHEAWVTGSYVRDMLMGRIPHDLDISTSARWETIRDLFSSQGFKVYET 71 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGR-----------------YAKVVFTRDWKAD 116 GT+ + +ITT R++ +G ++ FT + D Sbjct: 72 GTDRGTVTVNTGAHLVEITTFRTEEPIEGTRIAFQNAEHRKLSVWEPSSRFRFTNSVEKD 131 Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 LRRDFT+NAL + ++D GG+ D+ N TI+ +G+ R +D LRILR RF + Sbjct: 132 LLRRDFTMNALAFNPNCGILDPFGGVKDISNETIRAVGEPSERFWQDPLRILRAARFASQ 191 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223 G +++S A++ + LK ++RI +E +LL+ + AI+ Sbjct: 192 LG-FDVESRTKEAALASAPLLKHAPAQRIEAEFARLLQGDHARQAIM 237 >gi|118602492|ref|YP_903707.1| poly(A) polymerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567431|gb|ABL02236.1| poly(A) polymerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 379 Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + +++++NK K+ +VGG VRD L+NL +D DIAT P++V ++F ++R +I Sbjct: 16 DKDALRVINVINKAGFKAYLVGGCVRDLLLNLKPKDFDIATNAKPEQVHKLFKRSR--LI 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALY 128 + + +K+ ++ T RS + + V+ + + D +RRDF INALY Sbjct: 74 GRRFRLVHV-VFSARKFIEVATFRSGKVQTAKNGVVIRDNCYGNIEDDVVRRDFNINALY 132 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D + ++IDYVGGL D++ + + IG+ R +D +R++R RF E + + Sbjct: 133 YDIKTQEIIDYVGGLEDIKAKEMHIIGNPGIRFEQDPVRMIRAIRFQTKL-EFQLSYEIK 191 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 A + L +S+ R++ E KL + + G+ K +F Sbjct: 192 SAIFEQASLLGNISTVRLYEECIKLFHNEYGFEVYERLEKYGLLKYLF 239 >gi|149196126|ref|ZP_01873182.1| RNA-poly(A) polymerase [Lentisphaera araneosa HTCC2155] gi|149140973|gb|EDM29370.1| RNA-poly(A) polymerase [Lentisphaera araneosa HTCC2155] Length = 412 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 124/243 (51%), Gaps = 17/243 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + I+S L + ++ +VGGAVRD L+ + +D DI+T+ P++V F K + ++I Sbjct: 11 DRGAVQIISRLREAGHETYLVGGAVRDLLVGENPKDFDISTSATPEQVSAFFGKRKARII 70 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-----VFTRD--W---KADSLRRD 121 + + + R +++ T R R A+ + RD W + D+ RRD Sbjct: 71 --GRRFKIVHVYERGTLYEVATFRRTPNEKERSARPSDDGEIVWRDNVWGSPEEDANRRD 128 Query: 122 FTINALYADQ--QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 FT+NAL+ D + K+IDY GG+ D+ ++ ++ +GD R ED +R+LR + A YG Sbjct: 129 FTVNALFLDPTDKNKIIDYCGGVADIEDKKVRSLGDPMIRFTEDPVRMLRAVKLKAQYGF 188 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 E D + + + K + ++S R++ EI K+ + + G+ + I ++ Sbjct: 189 EFEDDVEKAIRELALK--ITLVSQRRLYEEILKITYKPYMAKTMEACHEAGLLEHIIPNI 246 Query: 239 QEI 241 +I Sbjct: 247 SDI 249 >gi|262195628|ref|YP_003266837.1| tRNA adenylyltransferase [Haliangium ochraceum DSM 14365] gi|262078975|gb|ACY14944.1| tRNA adenylyltransferase [Haliangium ochraceum DSM 14365] Length = 471 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 15/231 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 + + L++ +S VGGAVRD+L+ + D D+AT+ P V +F KT + T I + Sbjct: 40 VCARLHEAGHQSVCVGGAVRDALLGRAPGDWDVATSAAPAEVQALFDKT----VDTGIQH 95 Query: 78 GTIKIICRKKY-------FDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALY 128 GT+ ++ R ++TT R D +DGR V F + D RRDF INA+ Sbjct: 96 GTVTVMARPASGRGRRLPIEVTTFRGDGSYSDGRRPDSVTFGVPLREDLARRDFVINAMA 155 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D + +ID GG DL I+ +G+ R ED LR++R RF A G +D+ Sbjct: 156 YDPVRRALIDPFGGRRDLARGLIRAVGEPARRFDEDGLRVMRAVRFAAKLG-FALDAATE 214 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 A A L +S ERI SE+ LL A+ + GI +I ++ Sbjct: 215 AAIPGALGRLSQVSWERIRSELFALLVARAAAEGLAIAARTGILAQILPEL 265 >gi|183220775|ref|YP_001838771.1| Poly(A) polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779197|gb|ABZ97495.1| Poly(A) polymerase (PAP; Plasmid copy number protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 497 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 19/214 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D I I++ LNK K+ +VGG VRD LM +D DI T+ P+++ R+F+ R Sbjct: 46 DEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRVFNNCRI--- 102 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-----------KADSLRR 120 + + II + K +++T RS + + R K D+ K D+ RR Sbjct: 103 -IGKRFKIVHIIFKGKIIEVSTFRS--LPEHRLEKHKAENDYLIKRDNSFGTAKEDAARR 159 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+L+ D + ++DYVGG D++ + ++ IGD ED +R+LR +F G Sbjct: 160 DFTINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVKFSVLLG- 218 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +I+ +A K + L+ S+ R+ E NK+ Sbjct: 219 LDIEKKTKLAIKKNRLELEKSSTARLLEEYNKMF 252 >gi|169830674|ref|YP_001716656.1| metal dependent phosphohydrolase [Candidatus Desulforudis audaxviator MP104C] gi|169637518|gb|ACA59024.1| metal dependent phosphohydrolase [Candidatus Desulforudis audaxviator MP104C] Length = 490 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 3/216 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L ++ ++ +VGGAVRD L+ ++ D+ T P V+ + ++ R K ++ Sbjct: 9 VLDIITAAGREAYVVGGAVRDLLLGREPKEFDVCTDACPREVLTLAAENRIKAFKKGAAF 68 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 G I I + +I T R++ + R KV F + D RRDFT+NA+ G + Sbjct: 69 GVISWILDDEEIEIATFRTEFYGNDAHRPEKVEFVWALEDDLARRDFTVNAIAMRADGSI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G DL ++ +GD R ED LR+ R RF A YG + + A +A Sbjct: 129 VDPFEGRPDLEAGVLRAVGDPEERFGEDALRMFRACRFVAEYG-FTLAPETKAAIPRALH 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 + LS ER+ EI + L A++ + M G+ Sbjct: 188 RVAGLSVERVRDEIYRTLMAEHAAAGLELMRETGLL 223 >gi|149179457|ref|ZP_01858009.1| metal dependent phosphohydrolase [Planctomyces maris DSM 8797] gi|148841703|gb|EDL56114.1| metal dependent phosphohydrolase [Planctomyces maris DSM 8797] Length = 422 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 11/213 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD- 90 GG VRD L+ +D D+AT LP+ V +F K R + S+G I + + D Sbjct: 27 AGGCVRDLLLQKEPKDYDVATNALPEEVRTLFGKRR--TLAVGASFGVIIVRGHQPDCDV 84 Query: 91 -ITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 I T RS+ DGR + V + D+ RRDFTIN ++ D + DYVGG DL Sbjct: 85 EIATFRSEGPYLDGRRPEHVKFTTAEEDAQRRDFTINGMFYDPINDSLFDYVGGKADLNQ 144 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLVASIKAKKGLKILSSERI 205 I+ IG+ R+ ED LR+LR RF A H+ ++ A + ++S ERI Sbjct: 145 HIIRAIGNPLERMQEDKLRLLRAIRFAATLHF---QLEESTRQAVQTMADQINVVSPERI 201 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 E+ K+L AI + G+ K++ ++ Sbjct: 202 ADELRKMLIHPARSQAIALVQETGLLKQVLPEL 234 >gi|189910875|ref|YP_001962430.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775551|gb|ABZ93852.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 492 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 19/214 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D I I++ LNK K+ +VGG VRD LM +D DI T+ P+++ R+F+ R Sbjct: 41 DEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRVFNNCRI--- 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-----------KADSLRR 120 + + II + K +++T RS + + R K D+ K D+ RR Sbjct: 98 -IGKRFKIVHIIFKGKIIEVSTFRS--LPEHRLEKHKAENDYLIKRDNSFGTAKEDAARR 154 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+L+ D + ++DYVGG D++ + ++ IGD ED +R+LR +F G Sbjct: 155 DFTINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVKFSVLLG- 213 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +I+ +A K + L+ S+ R+ E NK+ Sbjct: 214 LDIEKKTKLAIKKNRLELEKSSTARLLEEYNKMF 247 >gi|257057896|ref|YP_003135728.1| tRNA adenylyltransferase [Saccharomonospora viridis DSM 43017] gi|256587768|gb|ACU98901.1| tRNA adenylyltransferase [Saccharomonospora viridis DSM 43017] Length = 523 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 27/263 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+++ RI S V T I +GT+ + + Sbjct: 48 LVGGSVRDALLGKLSTDLDFTTDARPEQIQRIVSGWAEAVWDTGIEFGTVGVAKHGTTCE 107 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNR 148 ITT R+D GR+ +V F ++D +RRDFT+NA+ D K +D GL L R Sbjct: 108 ITTFRADRYDRVGRHPEVEFGDSIESDLVRRDFTVNAMAVDLATKSFVDPHNGLEALARR 167 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILSSERI 205 T+ +D LR+LR RF + G E + + A +K +++ER+ Sbjct: 168 TLDTPATPEESFADDPLRMLRAARFVSQLGFEPEPRV----VRAMTDMADEIKRITAERV 223 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQV 249 +E++KL+ P I M + G+ + DV + SL L Q Sbjct: 224 QAELSKLILGSAPRKGIELMVDTGLADHVLPEVPGMRLAIDEHHQHKDVYQHSLKVLEQA 283 Query: 250 IEAEQVFEWKI--DSLLRFIVLI 270 I+ E E ++ D +LR L+ Sbjct: 284 IDLETAHEPRLEPDLVLRLAALL 306 >gi|332283312|ref|YP_004415223.1| poly(A) polymerase [Pusillimonas sp. T7-7] gi|330427265|gb|AEC18599.1| poly(A) polymerase [Pusillimonas sp. T7-7] Length = 453 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 14/225 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCEVLRAEGYDAYIVGGAVRDLIVGLEPKDFDVATNATPNQIRPLFRRARI----IGK 96 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ +D GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRATATSDEHTDEHGRILRDNLFGSQQEDAARRDFTLNALYY 156 Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D +VIDY G+ DL+NR ++ IGD R ED +R+LR RF A ID Sbjct: 157 DPINEEVIDYHRGVPDLKNRVVRMIGDPEKRYREDPVRMLRALRFAAKLN-GTIDP-ATQ 214 Query: 189 ASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 A I GL + + S R++ E KLL + ++ + + G+ K Sbjct: 215 APIAPLSGLIEHVPSSRLFDETLKLLTCGHAMDCLRQLQTMGLHK 259 >gi|325289849|ref|YP_004266030.1| tRNA cytidylyltransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965250|gb|ADY56029.1| tRNA cytidylyltransferase [Syntrophobotulus glycolicus DSM 8271] Length = 533 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 19/207 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++L +L D + IVGGAVRD ++ L+ +D+D+ T + P V + K RYKV I Sbjct: 10 DVLHILQNVSD-TWIVGGAVRDQILGLAARDLDLVTMLDPVSVRSVLEKHRYKVHHIGIP 68 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKV 135 +GT+ + ++ DI + T D + D+ RRDFTIN +Y + + G++ Sbjct: 69 FGTLTVFQDEQRIDI----------------IHTDDLETDAQRRDFTINCIYQNSKTGEI 112 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G DL R IK G A R ED +RILR R FAH I+ + ++ + Sbjct: 113 FDPFQGREDLEKRQIKTCGRAEDRFTEDPVRILRMIR-FAHRQAFTIEENTWKSARASLA 171 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAI 222 L+ + ER E+ ++L A ++ + Sbjct: 172 LLEKAAPERTTGELVQILLADRVVDGV 198 >gi|269215861|ref|ZP_06159715.1| polyA polymerase family protein [Slackia exigua ATCC 700122] gi|269130811|gb|EEZ61887.1| polyA polymerase family protein [Slackia exigua ATCC 700122] Length = 455 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 3/214 (1%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +D+ +L LL + +VGG VRD+L D+D+AT+ V R+ +V Sbjct: 11 TDVETLLDLLEGTGASAWVVGGYVRDALAGDDAHDVDVATSARWQDVARVCVDAGMRVYE 70 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRY-AKVVFTRDWKADSLRRDFTINALYAD 130 T ++GT+ + ++ ++TT R D D R+ A V F + D RRDFT NAL Sbjct: 71 TGTAHGTVSVNTGRRIVEVTTYRIDGPYEDARHPASVSFVDSIELDLARRDFTFNALAYH 130 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D G +DL+ I+ +GD R ED LRILR RF + +G +D A Sbjct: 131 PERGLLDPYDGCSDLKGGIIRTVGDPMKRFREDPLRILRAVRFASRFGFA-VDDRTESAM 189 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 + + +++ERI +E +++L + NAI+ Sbjct: 190 RRLAPLIGGVAAERIENEFSRMLLGDHACNAIIE 223 >gi|325125950|gb|ADY85280.1| poly(A) polymerase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 351 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 7/188 (3%) Query: 48 IDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYA 105 +DIAT+ P+ V F+K+ I T I +GT+ ++ ++ITT R++ R Sbjct: 1 MDIATSAYPEEVKETFAKS----IDTGIQHGTVTVLYGGSSYEITTFRTESGYQDFRRPD 56 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 KV F ++ D RRDFTINAL ++QG++ID GL DL+ R IK +G A R ED L Sbjct: 57 KVTFVQNLDEDLKRRDFTINALAMNRQGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDAL 116 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 R++R RF + +++ A I + L +S ERI E KL K+ A Sbjct: 117 RMMRAVRFMSQLS-FSLEEKTRQAIINNHELLSKISVERIREEFVKLALGKDSRQAFKDF 175 Query: 226 YNGGIFKE 233 G+ +E Sbjct: 176 LATGLSEE 183 >gi|170728128|ref|YP_001762154.1| poly(A) polymerase [Shewanella woodyi ATCC 51908] gi|169813475|gb|ACA88059.1| poly(A) polymerase [Shewanella woodyi ATCC 51908] Length = 421 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 16/240 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F R Sbjct: 3 ENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRL---- 58 Query: 73 TSISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDF 122 + I+ + ++ TLR S +GR + D+ RRDF Sbjct: 59 VGRRFRLAHIVFGRDVIEVATLRGHHVDNEEKISKTNAEGRLLRDNVYGTIDEDAERRDF 118 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NALY D + Y GGL DL +RTI+ IGD + R ED +R+LR RF G Sbjct: 119 TVNALYYDISDFSIHSYGGGLEDLHSRTIRMIGDPNTRYREDPVRMLRAVRFATKLG-MT 177 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D + + LK + + R++ E+ KL N M + G+F +F V+ + Sbjct: 178 VDEETAAPIYELAPLLKDIPAARMYEEVLKLFFNGQAENNFAMMRDFGLFAPLFPLVETL 237 >gi|221065686|ref|ZP_03541791.1| poly(A) polymerase [Comamonas testosteroni KF-1] gi|220710709|gb|EED66077.1| poly(A) polymerase [Comamonas testosteroni KF-1] Length = 521 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 39/302 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 DRRAIDVVQTLKRSGHEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRAFIIGK 102 Query: 67 RYKVIPTSISYG------TIKIICRKKYFD-----------------ITTLRSDLITDGR 103 R++++ + YG I++ + + D + L+ + GR Sbjct: 103 RFRIV--HVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAVDASGR 160 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + D+ RRDFTINA+Y D + + V+DY GG+ D + + ++ IGD R E Sbjct: 161 VLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPATRYRE 220 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A K + A ++ + L+ + R++ E+ KLL+ + L Sbjct: 221 DPVRIIRAVRFAAKLSSKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQTGHALA 280 Query: 221 AIVHMYNGGIFKEIF--LDVQEISLD----QLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 ++ + G+ + I+ LDV D Q + + +V E K + + + WQD Sbjct: 281 SVAQLKELGLSRGIYPLLDVVMERADHPFVQAALMDTDRRVAEGKPVAPSFLLACVLWQD 340 Query: 275 KK 276 K Sbjct: 341 VK 342 >gi|329914129|ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480] gi|327545195|gb|EGF30466.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480] Length = 455 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 24/226 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 S+ I + L + K+ +VGGAVRD L+ + +D DIAT P++V ++F + R Sbjct: 39 SNAIRVTQGLQQAGFKAFLVGGAVRDLLLGIKPKDFDIATNATPEQVRKLFRRAFIIGRR 98 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS---DLITDGRYAKVVFTR---DWKADSLRRD 121 ++++ ++ + ++TT R D + +V+ + D++RRD Sbjct: 99 FQIV---------HVMFGQDLLEVTTFRGASVDAAPKDEHGRVLRDNTFGEQHEDAIRRD 149 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y D + V+DY GG+ D+RN+T++ IG R ED +R+LR RF A + Sbjct: 150 FTINAMYYDPDTQTVLDYHGGMADIRNKTLRIIGVPEERYREDPVRLLRVVRFAAKL-DF 208 Query: 181 NIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHM 225 ID+ A IK L + + R++ E+ KLL + + + + H+ Sbjct: 209 TIDA-ATAAPIKTMAPLINNVPAARVFDEMLKLLMSGHAMACLHHL 253 >gi|148244592|ref|YP_001219286.1| poly(A) polymerase [Candidatus Vesicomyosocius okutanii HA] gi|146326419|dbj|BAF61562.1| poly(A) polymerase [Candidatus Vesicomyosocius okutanii HA] Length = 383 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 18/233 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D D + +++++NK K+ +VGG VRD L++L+ +D DIAT P++V ++F ++ Sbjct: 16 DKDALKVINIINKAGFKAYLVGGCVRDFLLSLTPKDFDIATNAKPEQVHKLFKRSRLIGR 75 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRS---DLITDGRYAKVVFTRDWKADSLRRDFT 123 R++++ S +K+ ++ T RS + +G + + + D +RRD + Sbjct: 76 RFRLVHVMFSA--------RKFIEVATFRSGKVQVANNGVVMRDNCYGNIEDDVVRRDLS 127 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INALY D + +VIDYVGGL D+R + + IG+ R +D +R++R RF + ++ Sbjct: 128 INALYYDIETQEVIDYVGGLQDIRVQELHVIGNPKKRFEQDPVRMIRVIRFQTKL-DFHL 186 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ A + L +S+ R++ E KL + + G+FK +F Sbjct: 187 SNEIKSAIFEQAPLLGNISTIRLYEECIKLFHNEYGFKIYQRLEEYGLFKYLF 239 >gi|152981224|ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Marseille] gi|151281301|gb|ABR89711.1| poly(A) polymerase [Janthinobacterium sp. Marseille] Length = 455 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 24/226 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 ++ + + S L + K+ +VGGAVRD L+ + +D DIAT P++V R+F + R Sbjct: 39 ANAVRVTSTLQQAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKRLFRRAFIIGKR 98 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR---SDLITDGRYAKVVFTR---DWKADSLRRD 121 ++++ + +G + ++TT R ++ + +V+ + D+LRRD Sbjct: 99 FQIV--HVMFG-------QDLLEVTTFRGASTEAAPKDEHGRVLRDNTFGEQHEDALRRD 149 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y D + V+DY GG+ D+RN+T++ IG R ED +R+LR RF A Sbjct: 150 FTINAMYYDPATQTVLDYHGGMADIRNKTLRIIGVPEARYREDPVRMLRVVRFAAKL-NF 208 Query: 181 NIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHM 225 +ID D A I+ L + + R++ E+ KLL + + L + + Sbjct: 209 SIDPD-TSAPIRVMAPLINNVPAARVFDEMLKLLMSGSALACLQQL 253 >gi|73542462|ref|YP_296982.1| Poly(A) polymerase, PcnB [Ralstonia eutropha JMP134] gi|72119875|gb|AAZ62138.1| Poly(A) polymerase, PcnB [Ralstonia eutropha JMP134] Length = 509 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 132/263 (50%), Gaps = 37/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 44 NAVKVTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQSLFRRSRIIGRRF 103 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRY----------------AKVVFT 110 +++ + G + I F + + S+ + +GR +V+ Sbjct: 104 QIVHVTFYGGREQEIIEVSTFRALVDAVASETLPEGRRLKRSELDSKTHAIDASGRVLRD 163 Query: 111 RDWKA---DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 W + D+ RRDFTINA+Y D + + DY G+ D+R RT++ IGD R ED +R Sbjct: 164 NVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPTLRYREDPIR 223 Query: 167 ILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +LR RF A G E + G +AS+ + + S R++ E+ KLL + + ++ Sbjct: 224 MLRVVRFAAKTGFGIDEATREPIGGLASL-----IHNVPSARLFDEMLKLLMSGHAWASL 278 Query: 223 VHMYNGGIFKEIFLDVQEISLDQ 245 + G+ K + L + +++L+Q Sbjct: 279 QELRKAGLHKGL-LPLLDVALEQ 300 >gi|145589945|ref|YP_001156542.1| poly(A) polymerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048351|gb|ABP34978.1| poly(A) polymerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 467 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 13/210 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + + L + ++ IVGGAVRD ++ + +D D+AT P++V R+F K R Sbjct: 45 NAVKVTHTLQQAGYEAFIVGGAVRDLVLGIEPKDFDVATNATPEQVQRLFRKARLIGRRF 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRY----AKVVFTRDWKA---DSLRRDFTINA 126 I + T + +++T R+ L G + +++ W + D+ RRDFTINA Sbjct: 105 QIVHVTFFGKGHPEIIEVSTFRALLDNAGDHVAESGRILRDNVWGSQGEDAARRDFTINA 164 Query: 127 LYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 +Y D + V+DY GG+ D++ +T++ IGD R ED +R+LR RF A G D Sbjct: 165 MYYDPSTETVLDYHGGMADMQKKTLRMIGDPAKRYREDPIRMLRAIRFAAKTG---FALD 221 Query: 186 GLVASIKAKKG--LKILSSERIWSEINKLL 213 S AK G L + S R++ EI KLL Sbjct: 222 PNTRSPIAKLGTLLHDVPSARLFDEILKLL 251 >gi|330811775|ref|YP_004356237.1| polynucleotide adenylyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|28932734|gb|AAO60158.1| polynucleotide adenylyltransferase [Pseudomonas fluorescens] gi|327379883|gb|AEA71233.1| Putative polynucleotide adenylyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 465 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 12/231 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD L+N++ +D D+AT+ P+++ F R +K+ Sbjct: 43 VNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQIRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFTIN 125 + I++ + D R RD + D+ RRDFTIN Sbjct: 103 VHIHFGREIIEVATFRANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTIN 162 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +++DY G++D+RNR I+ IGD R ED +R+LR RF A + I+ Sbjct: 163 ALYYDPVSERILDYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAVRFAAKL-DFGIEK 221 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 V + L+ + S R++ E+ KL + N + + + +F +F Sbjct: 222 HSAVPIRELAPMLREIPSARLFEEVLKLFLSGNAADTFEMLVDLQLFDPLF 272 >gi|227506205|ref|ZP_03936254.1| possible tRNA adenylyltransferase [Corynebacterium striatum ATCC 6940] gi|227197229|gb|EEI77277.1| possible tRNA adenylyltransferase [Corynebacterium striatum ATCC 6940] Length = 467 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 5/217 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L++ D+D T P+ V I V T I +GT+ + + + + Sbjct: 34 LVGGSVRDALLSRLGHDLDFTTDARPEVVQEILDGWAETVWDTGIDFGTVSAVYKGQQIE 93 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD--QQG-KVIDYVGGLNDLR 146 ITT RSD D R +VVF + D +RRDF +NA+ + + G + D +GGL DL+ Sbjct: 94 ITTFRSDSYDGDSRNPEVVFGDSLEGDLVRRDFKVNAMAIELKEDGYEFHDPMGGLTDLK 153 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 N+ + +D LR+LR RF + E ++ A + ++ ++ ER+ Sbjct: 154 NKILDTPDKPEISFHDDPLRMLRAARFASQL-EFDVAERVKTAMTEMAGEIRRITVERVQ 212 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 E++KL+ KNP I + + GI IF ++ + + Sbjct: 213 VELDKLMLGKNPETGIELLVDTGILDHIFPEIPALRM 249 >gi|33242334|ref|NP_877275.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183] gi|33236845|gb|AAP98932.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183] gi|269302757|gb|ACZ32857.1| poly(A) polymerase [Chlamydophila pneumoniae LPCoLN] Length = 416 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF I Sbjct: 32 LSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKN----CILVGK 87 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I K+ +++T RS + V+ T+D W + D LRRDFTIN L+ D Sbjct: 88 RFRLAHIRFSKQIIEVSTFRSGSTDED----VLITKDNLWGTPEEDVLRRDFTINGLFYD 143 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++ A Sbjct: 144 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQEA 202 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 I ++ L S R++ E+ K+L + Sbjct: 203 LIACRQELIKSSQARVFEELIKMLNS 228 >gi|51892192|ref|YP_074883.1| putative RNA nucleotidyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51855881|dbj|BAD40039.1| putative RNA nucleotidyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 457 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 17/225 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL+ L ++ +VGGAVRD L+ L QD D+AT+ P + +F + R + + Sbjct: 31 TILARLTGAGHEAVVVGGAVRDLLLGLVPQDWDLATSARPAELQALFPEGR--AVGAARE 88 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 GT+ I ++IT R+ GR + D RRDFTI+A+ A +G++I Sbjct: 89 TGTLLIPGDGTTYEITPYRA-----GRL---------EGDLARRDFTIDAMAATPEGRLI 134 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D +GG DL ++ G R+ ED LR+LR R A + + +D A Sbjct: 135 DPLGGRRDLAAGVVRACGRPEDRLAEDPLRMLRAVRLAAQF-DLELDPALARAIAALAPR 193 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L+ ++ ERI +E +LL P + + G+ + ++ E+ Sbjct: 194 LQAVAPERIGAEFGRLLVTDRPAWGMQRLRELGLLHQFAPELLEM 238 >gi|304390464|ref|ZP_07372417.1| tRNA adenylyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326220|gb|EFL93465.1| tRNA adenylyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 509 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 88/328 (26%), Positives = 147/328 (44%), Gaps = 34/328 (10%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ ++ D+D+ T+ PD + V +YGT+ F Sbjct: 58 ALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVGRNYGTLGARKGDDVF 117 Query: 90 DITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 +ITT RS D D R V F + D RRDFT+N++ +++D GGLNDL Sbjct: 118 EITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPTLELVDPTGGLNDLAA 177 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ D +D LRI+R RF A E ++D + + A ++ L I+S ER+ + Sbjct: 178 GILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMETMRERLTIVSPERVQA 236 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEI------FLDVQ----------EISLDQLSQVIE 251 E+++L+ A P + M + +++ LD+Q E SL L Q I Sbjct: 237 ELSRLMTAPAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHKDVWEHSLTVLDQAIA 296 Query: 252 AEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 E + + D +LR ++ K + ++F +++F + + Sbjct: 297 QETGPDGPVPAPDLVLRLAAILHDIGKPAT----RRFEA-----GGVVTFHQHDVVGARI 347 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALH 336 + +K L Y DK I + +ALH Sbjct: 348 TRARLKALKY---DKATIRDVSRLVALH 372 >gi|289209207|ref|YP_003461273.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix] gi|288944838|gb|ADC72537.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix] Length = 461 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 33/254 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L ++C+VGG VRD L+ +D DIAT PD+V +F R Sbjct: 32 DDNALKVLYRLRDAGYRACLVGGGVRDLLLGREPKDFDIATDATPDQVRGLFRNCRL--- 88 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD------------------LITDGRYAKVVFTRDW 113 + ++ ++ ++ T R+ ++ D RY + Sbjct: 89 -IGRRFRLAHVLFGREVIEVATFRAPHDEDDDNDGQVALSEEGRILRDNRYGTI------ 141 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIG-DAHHRILEDYLRILRFF 171 + D++RRDF++NALY D V+DY GG+ DLR ++ IG D R+ ED +R+LR Sbjct: 142 EQDAVRRDFSVNALYYDIDDFSVLDYTGGVEDLREGVLRLIGDDVETRLREDPVRMLRAV 201 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A G + + A I+ GL + ++ R++ E+ KL + + + + G+ Sbjct: 202 RFSAKLGLRIAPE--VEAGIRELAGLMQTVAPARLFDEVIKLFHSGAAVTCLDELERFGL 259 Query: 231 FKEIFLDVQEISLD 244 F +F + E D Sbjct: 260 FAPMFPEAAECFAD 273 >gi|15618873|ref|NP_225159.1| Poly A polymerase [Chlamydophila pneumoniae CWL029] gi|4377290|gb|AAD19102.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029] Length = 430 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF I Sbjct: 46 LSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKN----CILVGK 101 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I K+ +++T RS + V+ T+D W + D LRRDFTIN L+ D Sbjct: 102 RFRLAHIRFSKQIIEVSTFRSGSTDED----VLITKDNLWGTPEEDVLRRDFTINGLFYD 157 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++ A Sbjct: 158 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 I ++ L S R++ E+ K+L + Sbjct: 217 LIACRQELIKSSQARVFEELIKMLNS 242 >gi|187929930|ref|YP_001900417.1| poly(A) polymerase [Ralstonia pickettii 12J] gi|187726820|gb|ACD27985.1| poly(A) polymerase [Ralstonia pickettii 12J] Length = 521 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 128/259 (49%), Gaps = 29/259 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + + S L + + IVGGAVRD L+ + +D D+AT PD+V +F ++R + Sbjct: 73 NAVKVTSTLQEAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRIIGRRF 132 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + ++ + G+ K RD Sbjct: 133 QIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHAVDASGRVLRD 192 Query: 113 --WKA---DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 W D+ RRDFT+NA+Y D + + DY G+ D+R RT++ IGD H R ED +R Sbjct: 193 NVWGTQAEDATRRDFTVNAMYYDPADETVHDYHHGMEDMRARTLRMIGDPHTRYREDPVR 252 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A G +ID D + + + + R++ E+ KLL + + ++ + Sbjct: 253 MLRVVRFAAKTG-FDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQELR 311 Query: 227 NGGIFKEIFLDVQEISLDQ 245 G+ + + L + +++L+Q Sbjct: 312 KAGLHRGL-LPLLDVALEQ 329 >gi|167622692|ref|YP_001672986.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4] gi|167352714|gb|ABZ75327.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4] Length = 430 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 16/239 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F R Sbjct: 16 NAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRL----V 71 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ TLR S GR + D+ RRDFT Sbjct: 72 GRRFRLAHIVFGRDVIEVATLRGHHVDSEEKISKTNESGRLLRDNVYGSIDEDAERRDFT 131 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GGL DL +RTI+ IGD R ED +R+LR R FA + I Sbjct: 132 VNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVR-FATKLDMTI 190 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +++ + LK + + R++ E+ KL A L M G+F+ +F V+ + Sbjct: 191 EANAAKPIKGLARLLKDIPAARMYEEVLKLFFAGKALENFHMMREFGLFEPLFPQVEAL 249 >gi|117929346|ref|YP_873897.1| metal dependent phosphohydrolase [Acidothermus cellulolyticus 11B] gi|117649809|gb|ABK53911.1| metal dependent phosphohydrolase [Acidothermus cellulolyticus 11B] Length = 525 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 10/266 (3%) Query: 13 SDLINILSLLNK-------GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 SDL +L +L++ G + +VGG++RD+L+ V D+D+AT+ PD V+++ Sbjct: 24 SDLAEVLPMLDELGQRFAHGGHELALVGGSIRDALLERPVVDLDLATSARPDEVLKLAKG 83 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTI 124 T I++GT+ + + + +ITT R++ R V + D RRDFT+ Sbjct: 84 WAESQWETGIAFGTVGLRKDRYHLEITTYRAERYDPTSRKPAVEYGESLLDDLKRRDFTV 143 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ + +++D G+ DL R I G +D LR+LR RF A G +D Sbjct: 144 NAIALTLPEHELVDPFDGIRDLLRRRITTPGRPEDSFSDDPLRMLRAARFAAQLG-FTVD 202 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + A L ++S+ERI E KLL A P +V + + G+ ++ + Sbjct: 203 PHVVAAMTAMAARLDVVSAERIRDEFTKLLLAPEPRRGLVLLVDTGLADRFLPELPALRR 262 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVL 269 + + + V+E + L + I L Sbjct: 263 LEADREYRHKDVYEHTLTVLDQAIAL 288 >gi|52426367|ref|YP_089504.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Mannheimia succiniciproducens MBEL55E] gi|73619797|sp|Q65Q41|CCA_MANSM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|52308419|gb|AAU38919.1| PcnB protein [Mannheimia succiniciproducens MBEL55E] Length = 419 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 107/200 (53%), Gaps = 20/200 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+NL V+D D + P++++ + + + P + T ++ Sbjct: 2 QTYLVGGAVRDQLLNLPVKDRDWVVVGATPEQLLSLGYQQVGRDFPVFLHPKT-----KE 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTR--DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 +Y R++ + Y + F+ + D +RRD TINA+ D QGK ID G+ Sbjct: 57 EY---ALARTERKSGAGYTGFICDFSPHISLEQDLIRRDLTINAIAQDNQGKFIDPYEGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL+NRT++ I A ED LR+LR RF A Y + + ++ L+A I K L+ Sbjct: 114 SDLKNRTLRHISPA---FAEDPLRVLRVARFAARYHQLDFSIAPETIALMAEITEKGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L+ ER+W E K L+ KNP Sbjct: 171 QLTIERVWQETEKALKEKNP 190 >gi|253583935|ref|ZP_04861133.1| poly(A) polymerase [Fusobacterium varium ATCC 27725] gi|251834507|gb|EES63070.1| poly(A) polymerase [Fusobacterium varium ATCC 27725] Length = 448 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 11/206 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRDSL+ L +D D T + ++++ IF + K I ++G I+I + +++ Sbjct: 28 IVGGYVRDSLLGLKPKDCDFVTNLSYEKLLEIFKEFHPKEI--GKAFGIIQIKYKGIHYE 85 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRN 147 I R D+ D R +V FT + D RRDFTINA+ D G+ YV + D+ N Sbjct: 86 IAKYRKDIGVPEDRREQEVEFTDNIMEDLKRRDFTINAVAFD--GENYRYVEHAVEDIMN 143 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIW 206 + ++F+G A RI ED LR++RF RF KN+++ + I L K LS ER+ Sbjct: 144 KNLRFVGGAPERIKEDPLRVMRFIRFLV---TKNLNNKNDIKQILPYIPLVKKLSMERMR 200 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFK 232 E +K++ A + +AI + GI + Sbjct: 201 DEFSKIITADDAHSAIELLEKTGILE 226 >gi|15836499|ref|NP_301023.1| poly A polymerase [Chlamydophila pneumoniae J138] gi|16752066|ref|NP_445432.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39] gi|7189807|gb|AAF38681.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39] gi|8979340|dbj|BAA99174.1| poly A polymerase [Chlamydophila pneumoniae J138] Length = 430 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF I Sbjct: 46 LSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKN----CILVGK 101 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I K+ +++T RS + V+ T+D W + D LRRDFTIN L+ D Sbjct: 102 RFRLAHIRFSKQIIEVSTFRSGSTDED----VLITKDNLWGTPEEDVLRRDFTINGLFYD 157 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++ A Sbjct: 158 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 I ++ L S R++ E+ K+L + Sbjct: 217 LIACRQELIKSSRARVFEELIKMLNS 242 >gi|332526336|ref|ZP_08402462.1| poly(A) polymerase [Rubrivivax benzoatilyticus JA2] gi|332110472|gb|EGJ10795.1| poly(A) polymerase [Rubrivivax benzoatilyticus JA2] Length = 515 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 30/252 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D + + ++ L ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 46 DDNAVRVVRTLKDAGHEAYIVGGAVRDLLVGLRPKDFDVATDATPEQVKALFRRAFIIGR 105 Query: 67 RYKVIPTSISYG----TIKIICRKKYFDIT----------TLRSDLITDGRY-----AKV 107 R++++ G I++ + YFD T R + I D R +V Sbjct: 106 RFRLVHVIFGRGREHEVIEVSTFRAYFDAAAAEQVKGNEKTARGE-IADQRVVVDASGRV 164 Query: 108 VFTRDWKA---DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILED 163 + W D+ RRDFTINA+Y D + V+DY GGL D R R ++ IGD R ED Sbjct: 165 LRDNVWGPQIEDAARRDFTINAMYYDPTTQVVVDYHGGLADSRARVLRMIGDPETRYRED 224 Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223 +RI+R R A G + ++ K L + R++ E+ KLL+ + L ++ Sbjct: 225 PVRIVRVVRIAAKLGFE-VEPATRAPMRKMAALLNNVPPSRMFDEMVKLLQTGHALKSLA 283 Query: 224 HMYNGGIFKEIF 235 + G+ + +F Sbjct: 284 ELKKQGLDQGVF 295 >gi|254447201|ref|ZP_05060668.1| poly(A) polymerase [gamma proteobacterium HTCC5015] gi|198263340|gb|EDY87618.1| poly(A) polymerase [gamma proteobacterium HTCC5015] Length = 434 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 17/213 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++NI++ LN+ ++ +VGG VRD L+ L +D D+AT+ PD V +F R Sbjct: 28 VLNIVARLNEAGHEAYLVGGCVRDLLIGLRPKDFDVATSATPDEVKALFRNCRL----VG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRRDFT 123 + I+ + + ++ T R+ + G+ V + + D+ RRDF+ Sbjct: 84 RRFRLAHILLGRDFIEVATFRAGQESAGKKQAVAHSDSGRILSDNVYGSLEQDAFRRDFS 143 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + ++DYVG + D+ R ++ IGD R ED +R+LR RF A G +I Sbjct: 144 VNALYFDVRDESIVDYVGAMADIEARQLRLIGDPDTRYREDPVRMLRAVRFAAKLG-FSI 202 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + + L+ + R++ E+ KLL++ Sbjct: 203 EPHTEAPIRELSDHLEDIPPARLFDEVIKLLQS 235 >gi|254468684|ref|ZP_05082090.1| poly(A) polymerase [beta proteobacterium KB13] gi|207087494|gb|EDZ64777.1| poly(A) polymerase [beta proteobacterium KB13] Length = 397 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 13/170 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 S ++ ++ L + + ++ +VGG +RD L+N+ +D DIAT PD+V IF + R Sbjct: 23 SYVLEVIRKLQQYDFQAYMVGGCIRDLLLNIQPKDFDIATNAHPDQVTAIFKNSRIIGRR 82 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 +K++ I I++ RKK ++ LR+ ++ D + + + D+ RRDFT+NA Sbjct: 83 FKIVHVRIDRQIIEVSTFRKKPSEVNKLRNGVVQDNAFGTI------EEDAQRRDFTMNA 136 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++ D + D G D+ NR I FIG+ RI ED +R+LR RF A Sbjct: 137 IFYDPLNNHLFDPFNGKKDIENRNINFIGNPEQRINEDPVRLLRAIRFHA 186 >gi|302531336|ref|ZP_07283678.1| tRNA adenylyltransferase [Streptomyces sp. AA4] gi|302440231|gb|EFL12047.1| tRNA adenylyltransferase [Streptomyces sp. AA4] Length = 481 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 21/260 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PDRV++I S+ V I++GT+ + + Sbjct: 37 LVGGSVRDALLGRLSSDLDFTTDARPDRVLQIVSEWGDAVWDVGIAFGTVGVTKNGTTLE 96 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNR 148 ITT R+D GR +V F + D LRRDFT+NA+ D GK ID G++ LR + Sbjct: 97 ITTFRADSYDRVGRNPEVTFGDTIEGDLLRRDFTVNAMAIDLVGKTFIDPHDGMDALRLK 156 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 + +D LR++R RF A G + A + + +++ER+ +E Sbjct: 157 VLDTPALPQESFADDPLRMMRAARFSAQLG-FTAAPRVVEAMTSMAEEIDRITAERVQTE 215 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVIEA 252 ++KL+ A +P + + + G+ + DV + SL L+Q I Sbjct: 216 LSKLMLAPDPRPGLELLVDTGLADRVLPELPGMRLAIDEHHQHKDVYQHSLTVLAQAIAL 275 Query: 253 EQVFE--WKIDSLLRFIVLI 270 E+ E + D +LR L+ Sbjct: 276 EKSHEPTSEPDLVLRLAALL 295 >gi|297180697|gb|ADI16906.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma proteobacterium HF0010_16J05] Length = 435 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 18/234 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--K 69 D D ++++ LN + +VGG +RD+L + +D D+AT D V RIF ++R + Sbjct: 47 DHDALDVIQQLNAHGFTALLVGGCIRDALCGVQPKDFDVATDAPLDEVKRIFRRSRIVGR 106 Query: 70 VIPTS-ISYGTIKIICRKKYFDITTLRSDLITDGRY-AKVVFTRD-----WKADSLRRDF 122 P + + YG + +++T R + + + A+ + RD + D+ RRDF Sbjct: 107 RFPIAHVRYG-------RNLIEVSTFRQSVSENIEHDAQGMILRDKAYGTLQEDAFRRDF 159 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 +INALY D + ++IDYVGGL DL +K IGD R+ ED +RILR RF G + Sbjct: 160 SINALYFDPNKNEIIDYVGGLEDLAAGEVKLIGDPAVRLAEDPVRILRAVRFANKLG-FS 218 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + + + L + R++ E K+ N H+ + GI + +F Sbjct: 219 LDPRIIELFEDSARRLTAIPPARLFDEFLKMFLTGCGENIWQHIRHTGIARVLF 272 >gi|110833201|ref|YP_692060.1| poly(A) polymerase [Alcanivorax borkumensis SK2] gi|110646312|emb|CAL15788.1| poly(A) polymerase [Alcanivorax borkumensis SK2] Length = 459 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 125/254 (49%), Gaps = 19/254 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 +N+L L+KG ++ +VGG +RD L +D D++T P++V R+F ++ R+++ Sbjct: 46 LNVLYGLHKGGFEAYLVGGCLRDILCGREPKDFDVSTNATPEQVQRLFKRSRIIGRRFQI 105 Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINA 126 + I++ R K D R+ V+ W + D+LRRDFTINA Sbjct: 106 VHVRFGREVIEVSTFRAKASDDNQDRNKHHAHEETGMVLRDNTWGSIEEDALRRDFTINA 165 Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY + + D+VG + D+ TI+ IGD R ED +R+LR RF A G + S Sbjct: 166 LYYNIADFSLHDFVGSMEDIDQETIRLIGDPEQRFREDPVRMLRAARFAAKLGFEIEKST 225 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A+ L++ S+ R++ E+ KL + + + + G+F+ +F + Q Sbjct: 226 ASRIPDMAELLLQVPSA-RLFDEVLKLFLSGHARASYEQLQELGLFRFLFPETQ------ 278 Query: 246 LSQVIEAEQVFEWK 259 Q +E +Q W+ Sbjct: 279 --QALEGDQGKTWE 290 >gi|296271520|ref|YP_003654152.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermobispora bispora DSM 43833] gi|296094307|gb|ADG90259.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermobispora bispora DSM 43833] Length = 483 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 5/218 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + +D+D+ T+ P++V+ I V I +GT+ + + Sbjct: 40 ALVGGCVRDVFLGRLGKDLDLTTSARPEQVLEIVKDWADAVWTIGIEFGTVGVRKGDRLL 99 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRN 147 +ITT RS+ R +V F + D RRDFT+NA+ G V +D GGL DL Sbjct: 100 EITTYRSESYDPSSRKPEVSFGDSLEGDLSRRDFTVNAMAVRLPGYVFVDPFGGLGDLAA 159 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIW 206 + ++ G +D LR+LR RF A G +V ++ A G + I+S+ERI Sbjct: 160 KVLRTPGSPEQSFDDDPLRMLRAARFAAQLGFTVAPE--VVEAMTAMAGRIDIVSAERIR 217 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E++KL+ A +P + + + G+ + ++ + L+ Sbjct: 218 DELDKLICAPHPRAGLTLLVDTGLAARVLPELPNLRLE 255 >gi|311742149|ref|ZP_07715959.1| tRNA adenylyltransferase [Aeromicrobium marinum DSM 15272] gi|311314642|gb|EFQ84549.1| tRNA adenylyltransferase [Aeromicrobium marinum DSM 15272] Length = 482 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 5/234 (2%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + L + +VGG VRD+L+ + D D T+ PD+V ++ + + Sbjct: 24 LARVGELFAAAGHEIALVGGPVRDALLGRTGNDWDFTTSATPDQVEQVVAGWADALWDVG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI + +ITT R+D G R V F R D RRDF +NA+ Sbjct: 84 REFGTIALRKGDDQLEITTYRTDAYEAGSRKPAVAFGRTLSGDLSRRDFAVNAMAVRLPG 143 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+ +D GGL DL +R ++ A +D LR++R RF A G +VA++ Sbjct: 144 GEFVDEFGGLADLADRVLRTPVTAQQSFDDDPLRMMRAARFVAQLGFTAAPE--VVAAMT 201 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A L I+S+ERI E++KL+ +P+ + + G+ + ++ + L++ Sbjct: 202 AMADRLAIVSAERIRDELDKLVCGADPVAGLRLLVESGLADRMLPELPALRLER 255 >gi|264679761|ref|YP_003279670.1| poly(A) polymerase [Comamonas testosteroni CNB-2] gi|262210276|gb|ACY34374.1| poly(A) polymerase [Comamonas testosteroni CNB-2] Length = 521 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 39/302 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 DRRAIDVVQTLKRSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRAFIIGK 102 Query: 67 RYKVIPTSISYG------TIKIICRKKYFD-----------------ITTLRSDLITDGR 103 R++++ + YG I++ + + D + L+ + GR Sbjct: 103 RFRIV--HVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAVDASGR 160 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + D+ RRDFTINA+Y D + + V+DY GG+ D + + ++ IGD R E Sbjct: 161 VLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPATRYRE 220 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A K + A ++ + L+ + R++ E+ KLL+ + L Sbjct: 221 DPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQTGHALA 280 Query: 221 AIVHMYNGGIFKEIF--LDVQEISLD----QLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 ++ + G+ + I+ LDV D Q + + +V E K + + + WQD Sbjct: 281 SVAQLKELGLSRGIYPLLDVVMERADHPFVQAALMDTDRRVAEGKPVAPSFLLACVLWQD 340 Query: 275 KK 276 K Sbjct: 341 VK 342 >gi|299136118|ref|ZP_07029302.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX8] gi|298602242|gb|EFI58396.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX8] Length = 461 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 20/225 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII----CRKK 87 GG VRD L+ + D D+AT+ PD+V F +T +G + +I + Sbjct: 29 AGGCVRDLLLGVDPHDFDVATSATPDQVQAAFPRTES----VGAHFGVVLVIELVHGERT 84 Query: 88 YFDITTLRSD-LITDGRYAKVV-FTRDWKADSLRRDFTINALYAD----QQGK-----VI 136 ++ T R+D +DGR V F+ D + D LRRDFTIN L D ++G V Sbjct: 85 ATEVATFRNDGAYSDGRRPDAVRFSLDPREDVLRRDFTINGLLLDVIDYEEGDRLQDCVR 144 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D+VGG DL + ++ IG+A R ED LR+LR RF A + I+S + A + Sbjct: 145 DFVGGQIDLEWKLVRAIGNAATRFAEDKLRMLRAIRFAARL-DFAIESRTMAAIQEQAVT 203 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +S+ER+ E+ K+L + G+ +E+ +V + Sbjct: 204 TTQVSAERVRDELTKILTEGGARRGFELLEESGLLREVLPEVARM 248 >gi|299533945|ref|ZP_07047306.1| poly(A) polymerase [Comamonas testosteroni S44] gi|298718072|gb|EFI59068.1| poly(A) polymerase [Comamonas testosteroni S44] Length = 521 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 39/302 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 DRRAIDVVQTLKRSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRAFIIGK 102 Query: 67 RYKVIPTSISYG------TIKIICRKKYFD-----------------ITTLRSDLITDGR 103 R++++ + YG I++ + + D + L+ + GR Sbjct: 103 RFRIV--HVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAVDASGR 160 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + D+ RRDFTINA+Y D + + V+DY GG+ D + + ++ IGD R E Sbjct: 161 VLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPATRYRE 220 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A K + A ++ + L+ + R++ E+ KLL+ + L Sbjct: 221 DPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQTGHALA 280 Query: 221 AIVHMYNGGIFKEIF--LDVQEISLD----QLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 ++ + G+ + I+ LDV D Q + + +V E K + + + WQD Sbjct: 281 SVAQLKELGLSRGIYPLLDVVMERADHPFVQAALMDTDRRVAEGKPVAPSFLLACVLWQD 340 Query: 275 KK 276 K Sbjct: 341 VK 342 >gi|306834779|ref|ZP_07467843.1| tRNA adenylyltransferase [Corynebacterium accolens ATCC 49726] gi|304569307|gb|EFM44808.1| tRNA adenylyltransferase [Corynebacterium accolens ATCC 49726] Length = 478 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 118/220 (53%), Gaps = 10/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+ V I + V T I+YGT+ + + + + Sbjct: 42 LVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIAYGTVSAVYKGQQIE 101 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 ITT RSD DG R +V++ + D +RRDF +NA L AD + D +GGL+D Sbjct: 102 ITTFRSDSY-DGQSRNPEVIYGDSLEGDLVRRDFKVNAMAIELLADATFEFHDPLGGLHD 160 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSE 203 + N+ + +D LR+LR RF + E ++ +D +VA+++ ++ ++ E Sbjct: 161 VANKVLDTPDKPEISFHDDPLRMLRAARFASQL-EFHV-ADRVVAAMRDMAAEIQRITVE 218 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 R+ E++KL+ K P + I + N GI IF ++ + + Sbjct: 219 RVQVELDKLMCGKAPWDGIDLLVNTGIADYIFPEIPALRM 258 >gi|50955943|ref|YP_063231.1| poly(A) polymerase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952425|gb|AAT90126.1| tRNA nucleotidyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 478 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 5/218 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG +RD+L+ V D+D T PD ++R+ S V +YGTI + ++ Sbjct: 35 SLVGGPIRDALLGREVHDLDFTTDARPDAIVRLLSPLADAVWDIGRAYGTIGAVFGEEAV 94 Query: 90 DITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 ++TT RSD DG R V F + D LRRDFT+NAL + +++D GG+ L Sbjct: 95 EVTTYRSDSY-DGTTRKPDVEFGDTLEGDLLRRDFTVNALALRVPEVRLVDPSGGVEHLL 153 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 R + +D LR+LR RF A G +D A ++I+S+ERI Sbjct: 154 ARVLTTPSSPEVSFGDDPLRMLRAARFAAQLG-FEVDGQTQAAMAAMADRIEIVSAERIR 212 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KLL + P I + + G+ + ++ + L+ Sbjct: 213 DELGKLLMSDRPRPGIELLVSTGLADRVLPELSALRLE 250 >gi|227487679|ref|ZP_03917995.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092373|gb|EEI27685.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 477 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 125/278 (44%), Gaps = 27/278 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L ++ N+ ++ +VGG+VRDSL+ D+D T+ LPD I S+ V T Sbjct: 24 LTSLAGEFNRHGEELYLVGGSVRDSLLGRLAGDLDFTTSALPDVTHDILSEWADAVWDTG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTIN----ALY 128 I YGTI + +ITT R+D DG R V F + D +RRDFTIN AL Sbjct: 84 IEYGTISAAKDGQQVEITTFRADTY-DGTSRNPVVKFGDTLEGDLVRRDFTINAMAIALS 142 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D +GGL L+NR I +D LR+LR RF A E ++ + + Sbjct: 143 PTGDHTFCDPLGGLTALQNRIIDTPDAPEISFGDDPLRMLRAARFAAQL-EFDVATRVVD 201 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL------------ 236 A + ++ ERI +E++KL+ P I + GI IF Sbjct: 202 AMTTMAAEIDRITRERIQAEMDKLICGAAPWRGIDLLVETGIMDRIFPEISALKALGDEH 261 Query: 237 ----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 DV + SL L Q +E E E D +LR+ L+ Sbjct: 262 NQHKDVYQHSLTVLRQAMEQE---EDGPDLVLRWAALL 296 >gi|227502218|ref|ZP_03932267.1| possible tRNA adenylyltransferase [Corynebacterium accolens ATCC 49725] gi|227077042|gb|EEI15005.1| possible tRNA adenylyltransferase [Corynebacterium accolens ATCC 49725] Length = 478 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 118/220 (53%), Gaps = 10/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+ V I + V T I+YGT+ + + + + Sbjct: 42 LVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIAYGTVSAVYKGQQIE 101 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 ITT RSD DG R +V++ + D +RRDF +NA L AD + D +GGL+D Sbjct: 102 ITTFRSDSY-DGQSRNPEVIYGDSLEGDLVRRDFKVNAMAIELLADATFEFHDPLGGLHD 160 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSE 203 + N+ + +D LR+LR RF + E ++ +D +VA+++ ++ ++ E Sbjct: 161 VANKVLDTPDKPEISFHDDPLRMLRAARFASQL-EFHV-ADRVVAAMRDMAAEIQRITVE 218 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 R+ E++KL+ K P + I + N GI IF ++ + + Sbjct: 219 RVQVELDKLMCGKAPWDGIDLLVNTGIADYIFPEIPALRM 258 >gi|194290641|ref|YP_002006548.1| poly(a) polymerase i [Cupriavidus taiwanensis LMG 19424] gi|193224476|emb|CAQ70487.1| poly(A) polymerase I [Cupriavidus taiwanensis LMG 19424] Length = 507 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 131/263 (49%), Gaps = 37/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 44 NAVKVTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPEQVQSLFRRSRIIGRRF 103 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRY----------------AKVVFT 110 +++ + G + I F + + S+ + +GR +V+ Sbjct: 104 QIVHVTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKTHAIDASGRVLRD 163 Query: 111 RDWKA---DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 W + D+ RRDFTINA+Y D + + DY G+ D+R RT++ IGD R ED +R Sbjct: 164 NVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPATRYREDPVR 223 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAI 222 +LR RF A G +ID A+ GL L S R++ E+ KLL + + ++ Sbjct: 224 MLRVVRFAAKTG-FDIDE----ATRHPIAGLAELIHNVPSARLFDEMLKLLMSGHAWASL 278 Query: 223 VHMYNGGIFKEIFLDVQEISLDQ 245 + G+ K + L + +++L+Q Sbjct: 279 QELRKAGLHKGL-LPLLDVALEQ 300 >gi|183222200|ref|YP_001840196.1| putative tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912254|ref|YP_001963809.1| poly A polymerase family of protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776930|gb|ABZ95231.1| Poly A polymerase family of protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780622|gb|ABZ98920.1| Putative tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 430 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 18/246 (7%) Query: 14 DLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D IN +L N G + C +VGG+VRD +M ++ D+ T P V ++F VI Sbjct: 20 DTIN-FALKNAGFE--CYLVGGSVRDLVMKKIPKEYDLTTNAEPKDVKKLFRT----VID 72 Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ K +++TT R D + R V F D RRDFT+NAL D Sbjct: 73 TGIEHGTVTVVLDKVNYEVTTYRIDKDYVDGRRPGHVEFGTTLHEDLKRRDFTMNALAYD 132 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G +ID GL D++++TI+ IG+ R ED LR +R RF + K ID + A Sbjct: 133 LTSGVLIDDHNGLADIKSKTIRTIGNPIQRFTEDGLRPIRALRFASTLNFK-IDEETKKA 191 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ------EISL 243 + K K +S ER EI K + P I + +F+ +Q EI L Sbjct: 192 IHQTKHITKKISLERFQDEILKSFLGEKPSVMIALLVEENLFQVFLPSMQLDLIPNEIFL 251 Query: 244 DQLSQV 249 ++L++V Sbjct: 252 EELNKV 257 >gi|315605488|ref|ZP_07880525.1| polyA polymerase family protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312755|gb|EFU60835.1| polyA polymerase family protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 533 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 88/343 (25%), Positives = 149/343 (43%), Gaps = 34/343 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + ++ ++ +VGG VRD+ + ++ D D+AT+ P+R + S+ Sbjct: 41 IMELGTIFRDAGEELALVGGPVRDAFLGVTPHDFDMATSARPERTEELLSRWGNATWDIG 100 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI ++TT R+D G R +V F + D RRDFT+NA+ Q Sbjct: 101 KEFGTIGGRRGDVVVEVTTYRTDEYEIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRLPQ 160 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GL DL ++ A +D LRI+R RF A G ++D D + A Sbjct: 161 MALVDPCAGLTDLAAGNLRTPVSAEQSFDDDPLRIMRAARFSAQLG-LDVDEDVMNAMET 219 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG----IFKEIFL------------ 236 L+I+S+ERI +E+ +L+ + P I M + G + E+ Sbjct: 220 MASRLEIVSAERIRAELERLIISPYPRRGIELMVHTGVADIVLPEVAALVSTVDEHKRHK 279 Query: 237 DVQEISLDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293 DV E +L + Q I+ E + + D +LRF L+ K + S Sbjct: 280 DVYEHTLTVVEQAIDLETGPDGPVPAPDFVLRFAALMHDVGKPATRRFEANGS------- 332 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 +SF + ++ +K L + DK I + +ALH Sbjct: 333 --VSFHHHEIVGAKMTRKRMKALHF---DKATIEAVSTLVALH 370 >gi|298345833|ref|YP_003718520.1| tRNA adenylyltransferase [Mobiluncus curtisii ATCC 43063] gi|315654406|ref|ZP_07907314.1| polyA polymerase family protein [Mobiluncus curtisii ATCC 51333] gi|298235894|gb|ADI67026.1| tRNA adenylyltransferase [Mobiluncus curtisii ATCC 43063] gi|315491441|gb|EFU81058.1| polyA polymerase family protein [Mobiluncus curtisii ATCC 51333] Length = 509 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 88/328 (26%), Positives = 147/328 (44%), Gaps = 34/328 (10%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ ++ D+D+ T+ PD + V +YGT+ F Sbjct: 58 ALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVGRNYGTLGARKGDDVF 117 Query: 90 DITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 +ITT RS D D R V F + D RRDFT+N++ +++D GGLNDL Sbjct: 118 EITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPTLELVDPTGGLNDLAA 177 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ D +D LRI+R RF A E ++D + + A ++ L I+S ER+ + Sbjct: 178 GILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMETMRERLTIVSPERVQA 236 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEI------FLDVQ----------EISLDQLSQVIE 251 E+++L+ A P + M + +++ LD+Q E SL L Q I Sbjct: 237 ELSRLMIASAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHKDVWEHSLTVLDQAIA 296 Query: 252 AEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 E + + D +LR ++ K + ++F +++F + + Sbjct: 297 QETGPDGPVPAPDLVLRLAAILHDIGKPAT----RRFEA-----GGVVTFHQHDVVGARI 347 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALH 336 + +K L Y DK I + +ALH Sbjct: 348 TRARLKALKY---DKATIRDVSRLVALH 372 >gi|89901286|ref|YP_523757.1| poly(A) polymerase [Rhodoferax ferrireducens T118] gi|89346023|gb|ABD70226.1| poly(A) polymerase [Rhodoferax ferrireducens T118] Length = 535 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 131/260 (50%), Gaps = 35/260 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D +N++ L ++ +VGGAVRD ++ L+ +D D+AT P++V +F + Sbjct: 41 DERALNVVRTLKNAGFEAYVVGGAVRDLMVGLAPKDFDVATNATPEQVKGLFRRAFIIGR 100 Query: 67 RYKVIPTSISYG------TIKIICRKKYFDIT----------TLRSDLI-------TDGR 103 R++++ + YG I++ + Y D T +S+L + GR Sbjct: 101 RFRIV--HVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNEKTSKSELAGMKHAVDSSGR 158 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + + D++RRDFTINA+Y D + + V+DY G+ D ++R I+ IGD R E Sbjct: 159 VLRDNVWGPQEEDAVRRDFTINAMYYDPETQIVVDYHHGIKDSKDRVIRMIGDPATRYRE 218 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A + A+ IK+++ L + R++ E+ KLL+ + L Sbjct: 219 DPVRIIRAVRFAAKLSGLGFKLEAKTAAPLIKSQELLAEVPQSRLFDEMLKLLQTGHALA 278 Query: 221 AIVHMYNGGIFKEIF--LDV 238 +I + G+ + I+ LDV Sbjct: 279 SIEQLKALGMARGIYPLLDV 298 >gi|330900398|gb|EGH31817.1| poly(A) polymerase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 363 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 215 KLDFGIEKHSAQPIRALAPM---LRDIPSARLFEEVLKLF 251 >gi|157960524|ref|YP_001500558.1| poly(A) polymerase [Shewanella pealeana ATCC 700345] gi|157845524|gb|ABV86023.1| poly(A) polymerase [Shewanella pealeana ATCC 700345] Length = 434 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 20/241 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F R Sbjct: 16 NAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRL----V 71 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK------------ADSLRRD 121 + I+ + ++ TLR + G K+ T + D+ RRD Sbjct: 72 GRRFRLAHIVFGRDVIEVATLRGHHVDSGE--KISKTNESGRLLRDNVYGSIDEDAERRD 129 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL +RTI+ IGD R ED +R+LR RF G Sbjct: 130 FTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKLG-M 188 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +I+ LK + + R++ E+ KL A L M G+F+ +F ++ Sbjct: 189 SIEPKAAEPIQGLAHLLKDIPAARMYEEVLKLFFAGKALENYHMMREFGLFEPLFPQLEA 248 Query: 241 I 241 + Sbjct: 249 L 249 >gi|86743206|ref|YP_483606.1| metal dependent phosphohydrolase [Frankia sp. CcI3] gi|86570068|gb|ABD13877.1| metal dependent phosphohydrolase [Frankia sp. CcI3] Length = 502 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 13/225 (5%) Query: 31 IVGGAVRDSLMNLSVQ--------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 +VGG+VRD+L+ D+D AT P+RV+ I I++GT+ + Sbjct: 41 LVGGSVRDALLGRPASAVSGAVPADLDFATDARPERVLEITRGWAEATWEAGIAFGTVGL 100 Query: 83 ICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVG 140 F+ITT RS+ R V + +AD RRDFT+NA+ G +D G Sbjct: 101 ARHGVRFEITTYRSEAYDRKSRNPAVTYGDSLEADLSRRDFTVNAMAVSVPGHDFVDLFG 160 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKI 199 G+ DL ++ +D LRILR RF A G + LVA+++++ L + Sbjct: 161 GMADLARGVLRTPASPEASFDDDPLRILRAARFEAALGLTPVPE--LVAAMRSRADRLAV 218 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +S ERI E+ KL+ A +P+ + + GI + +V + ++ Sbjct: 219 VSPERIRDELRKLMSAPDPVAGLERLVEVGIADIVLPEVSAMRME 263 >gi|227541389|ref|ZP_03971438.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182940|gb|EEI63912.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 477 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 125/278 (44%), Gaps = 27/278 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L ++ N+ ++ +VGG+VRDSL+ D+D T+ LPD I S+ V T Sbjct: 24 LTSLAGEFNRHGEELYLVGGSVRDSLLGRLAGDLDFTTSALPDITHDILSEWADAVWDTG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTIN----ALY 128 I YGTI + +ITT R+D DG R V F + D +RRDFTIN AL Sbjct: 84 IEYGTISAAKDGQQVEITTFRADTY-DGNSRNPVVKFGDTLEGDLVRRDFTINAMAIALS 142 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D +GGL L+NR I +D LR+LR RF A E ++ + + Sbjct: 143 PTGDHTFCDPLGGLTALQNRIIDTPDAPEISFGDDPLRMLRAARFAAQL-EFDVATRVVD 201 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL------------ 236 A + ++ ERI +E++KL+ P I + GI IF Sbjct: 202 AMTTMAAEIDRITRERIQTELDKLICGAAPWRGIDLLVETGIMDRIFPEISALKALGDEH 261 Query: 237 ----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 DV + SL L Q +E E E D +LR+ L+ Sbjct: 262 NQHKDVYQHSLTVLRQAMEQE---EDGPDLVLRWAALL 296 >gi|258645720|ref|ZP_05733189.1| polyA polymerase [Dialister invisus DSM 15470] gi|260403089|gb|EEW96636.1| polyA polymerase [Dialister invisus DSM 15470] Length = 500 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 14/210 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + I++ L ++ VGG VRD L+ + D DI T+ P+ ++ + + +K + Sbjct: 29 DRNASAIINALENSGYEAYAVGGCVRDLLLAKAPHDWDITTSAKPEEIISVMGRNGWKTV 88 Query: 72 -PTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +GT+ ++ +++TT R++ R + F+ K D RRDFT+NAL Sbjct: 89 DGAGRRFGTVIVVINHIAYEVTTFRNEFYGQDSHRPENITFSSTLKEDLSRRDFTVNALA 148 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--- 185 + G V DY G DL N+ ++ +G A R ED LR+ R RF G+ + +D Sbjct: 149 LGRDGVVYDYFDGTKDLENKKLRTVGKAEERFREDALRLFRACRFI---GQLDFMADKSL 205 Query: 186 --GLVASIKAKKGLKILSSERIWSEINKLL 213 G+ ++ GL + ER+ E+ KLL Sbjct: 206 VRGMASAFDRVSGLSL---ERVREEVEKLL 232 >gi|270292416|ref|ZP_06198627.1| polyA polymerase [Streptococcus sp. M143] gi|270278395|gb|EFA24241.1| polyA polymerase [Streptococcus sp. M143] Length = 354 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 7/168 (4%) Query: 48 IDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS-DLITDGRYAK 106 +DIAT+ P+ +IF +T I +GT+ ++ + +++TT R+ D+ D R Sbjct: 1 MDIATSSYPEETKQIFPRT----ADIGIEHGTVLVLDGNEEYEVTTFRTEDVYVDYRRPS 56 Query: 107 VV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 V F R + D RRDFT+NA D+ G++ID GL DL N+ ++ +G A R ED L Sbjct: 57 AVSFVRSLEEDLKRRDFTVNAFALDETGEIIDLFHGLEDLENQVLRAVGIASERFNEDAL 116 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 RI+R FRF A G ++ + A L+ +S ER + E +KLL Sbjct: 117 RIMRGFRFQASLG-FELEPETFEAMKSLTPLLEKISVERTFVEFDKLL 163 >gi|91794520|ref|YP_564171.1| poly(A) polymerase [Shewanella denitrificans OS217] gi|91716522|gb|ABE56448.1| poly(A) polymerase [Shewanella denitrificans OS217] Length = 449 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 17/253 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK K+ +VGG VRD L+ L +D D+ T PD + +F R Sbjct: 21 NALKVLYRLNKSGYKAYLVGGGVRDILLGLEPKDFDVVTNATPDEIKALFRNCRL----V 76 Query: 74 SISYGTIKIICRKKYFDITTLR------SDLIT----DGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ T R SD I+ +GR + + D+ RRDFT Sbjct: 77 GRRFRLAHIVFGRDVIEVATFRGHHGENSDNISKSNAEGRLLRDNVYGEIDEDAERRDFT 136 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GG++DLRN++IK IGD R ED +R+LR R FA + I Sbjct: 137 VNALYYDISDYSIRSYGGGMDDLRNKSIKMIGDPETRYREDPVRMLRAVR-FATKLDMQI 195 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + L + + R++ E+ KL A M G+F +F VQ + Sbjct: 196 DPVTAAPITELASLLADIPAARMYEEVLKLFFAGKAEANFELMLKFGLFAPLFPQVQAL- 254 Query: 243 LDQLSQVIEAEQV 255 LD+ + A V Sbjct: 255 LDESPKGDTARMV 267 >gi|294142393|ref|YP_003558371.1| polyA polymerase [Shewanella violacea DSS12] gi|293328862|dbj|BAJ03593.1| polyA polymerase [Shewanella violacea DSS12] Length = 435 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 16/243 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + +F R Sbjct: 4 NAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKGLFRNCRL----I 59 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRY-----AKVVFTRD-----WKADSLRRDFT 123 + I+ + ++ TLR + G A+ RD D+ RRDFT Sbjct: 60 GRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNAEGRLLRDNVYGTIDEDAERRDFT 119 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR R FA I Sbjct: 120 VNALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVR-FATKLNMTI 178 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + D + LK + + R++ EI KL + LN M + G+F+ +F V Sbjct: 179 EKDTAAPISELAPLLKDIPAARMYEEILKLFFNGHALNNFNMMRDLGLFEPLFPLVNSQL 238 Query: 243 LDQ 245 +D+ Sbjct: 239 VDE 241 >gi|227824836|ref|ZP_03989668.1| metal-dependent phosphohydrolase [Acidaminococcus sp. D21] gi|226905335|gb|EEH91253.1| metal-dependent phosphohydrolase [Acidaminococcus sp. D21] Length = 484 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 6/222 (2%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +I +L L K ++ +VGGAVRD L D DI T+ P+ R+ V+ Sbjct: 7 SYVITVLELFRKHGFEAYVVGGAVRDLLCGKHPHDYDIVTSARPEETRRLCKGAGLSVVE 66 Query: 73 T-SISYGTIKIICRKKYFDITTLRSDLI-TDG-RYAKVVFTRDWKADSLRRDFTINALYA 129 ++G + ++ + ++ R ++ TD R + V + + + D RRDFT+NA+ Sbjct: 67 NLGENFGVLVLLVEGRAVEVAAYRKEVYGTDAHRPSGVAYCQTLEEDLARRDFTVNAMAM 126 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D G + D G DL + ++ +G R ED LR+ R RF A G + G++ Sbjct: 127 DLAGNLTDPYSGQRDLEHHVLRVVGSPSDRFSEDALRMFRACRFVAQLG--FLPEAGILP 184 Query: 190 SIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 +IKA+ K LS R+ +E++KLL A + M G+ Sbjct: 185 AIKAEAPRAKGLSLSRVKAELHKLLRAPYAGQGMNLMVQSGL 226 >gi|157377033|ref|YP_001475633.1| polynucleotide adenylyltransferase [Shewanella sediminis HAW-EB3] gi|157319407|gb|ABV38505.1| Polynucleotide adenylyltransferase [Shewanella sediminis HAW-EB3] Length = 496 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 16/233 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 78 NAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKKLFRNCRL----V 133 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ TLR S +GR + D+ RRDFT Sbjct: 134 GRRFRLAHIVFGRDVIEVATLRGHHVEHVEQVSKTNAEGRLLRDNVYGTIDEDAERRDFT 193 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR R FA + I Sbjct: 194 VNALYYDISDFSIHSYGGGLEDLKSRTIRLIGDPNTRYREDPVRMLRAVR-FATKLDMTI 252 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 D + LK + + R++ EI KL N M G+F +F Sbjct: 253 DKGAADPIYELAPLLKDIPAARMYEEILKLFFNGQAANNFTMMREFGLFAPLF 305 >gi|225873814|ref|YP_002755273.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Acidobacterium capsulatum ATCC 51196] gi|225792662|gb|ACO32752.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Acidobacterium capsulatum ATCC 51196] Length = 462 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 21/248 (8%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I++ L ++ GG VRD L+ +D D+ T PD V+ +F +T Y V Sbjct: 22 HIVAHLRAHGYEAYFAGGCVRDMLLGHPPKDYDVTTRARPDVVLALFPRT-YAV---GAH 77 Query: 77 YGTI----KIICRKKYFDITTLRSD-LITDGRY-AKVVFTRDWKADSLRRDFTINALYAD 130 +G + +I + ++ T RSD DGR ++V F + D LRRDFTIN + D Sbjct: 78 FGVVLVADEIDGQPITTEVATFRSDGAYLDGRRPSEVAFADRPEDDVLRRDFTINGMLLD 137 Query: 131 -----QQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 Q G V+D+V G DL ++ IG A R ED LR+LR RF A +G Sbjct: 138 PEKWQQTGSLDDAVLDFVDGRADLSAGIVRAIGHAERRFTEDKLRMLRAVRFAARFG-YE 196 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ + A + G+ +S ER+ E+ ++L + +A + G+ +E+ ++ + Sbjct: 197 LEPETFAALRQLAPGIAQVSRERVRDELTRMLTEGHARHAFELLDASGLLREVLPEIDRL 256 Query: 242 -SLDQLSQ 248 ++Q Q Sbjct: 257 HGVEQPPQ 264 >gi|229160586|ref|ZP_04288581.1| CCA-adding enzyme [Bacillus cereus R309803] gi|228622996|gb|EEK79827.1| CCA-adding enzyme [Bacillus cereus R309803] Length = 370 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 117/233 (50%), Gaps = 29/233 (12%) Query: 36 VRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR 95 +RD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ ++ + +++TT R Sbjct: 1 MRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVGLEHGTVIVVENGEPYEVTTFR 56 Query: 96 SDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFI 153 ++ + R + V F R + D RRDFT+NA+ ++G+++D G ++ + I + Sbjct: 57 TESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDLFAGQEAIQKKEIVTV 116 Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-------LKILSSERIW 206 G+A R ED LR++R RF + + G K K+ L+ ++ ERI Sbjct: 117 GNAADRFQEDALRMMRGIRF--------VSTLGFALETKTKQAIEAYGHLLEHIAIERIT 168 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQVFEW 258 E KLL + + + +F + +L + E L + +Q +EW Sbjct: 169 VEFEKLLTGTYCVKGLQELVETKLFSHLPYLQMSEERLLKATQ-------YEW 214 >gi|257784302|ref|YP_003179519.1| metal dependent phosphohydrolase [Atopobium parvulum DSM 20469] gi|257472809|gb|ACV50928.1| metal dependent phosphohydrolase [Atopobium parvulum DSM 20469] Length = 492 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 3/209 (1%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L +L ++ IVGG VRD+L DIDI T + F V T I Sbjct: 43 LRVLEVLENAGFEAWIVGGWVRDALRGSFAHDIDITTLATWQQSKAAFVAAGIPVHETGI 102 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 +YGT+ + + ++TT R D DGR V F + D RRDFTINA+ + Sbjct: 103 AYGTVTAVVEQHPIEVTTYRCDGEYLDGRRPDSVQFVSCIEKDLARRDFTINAMAYHPKR 162 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D GG DL I+ +G+ R ED LR+LR RF + +++ A I+ Sbjct: 163 GLLDLYGGQEDLSAHVIRSVGEPKARFTEDALRMLRALRFACRF-SFSVEEKTHQALIEC 221 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAI 222 L ++SERI E+ +++E + +AI Sbjct: 222 APLLSQVASERIGLEVAQIVEGGHIAHAI 250 >gi|134095805|ref|YP_001100880.1| poly(A) polymerase I [Herminiimonas arsenicoxydans] gi|133739708|emb|CAL62759.1| Poly(A) polymerase [Herminiimonas arsenicoxydans] Length = 453 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 21/175 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 ++ I + S L + K+ +VGGAVRD L+ + +D DIAT P++V ++F + R Sbjct: 39 ANAIRVTSTLQEAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKKLFRRAFIIGKR 98 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR---SDLITDGRYAKVVFTR---DWKADSLRRD 121 +++ + ++ + ++TT R SD + +V+ + D+LRRD Sbjct: 99 FQI---------VHVMFGQDLLEVTTFRGSSSDGAPKDEHGRVLRDNTFGEQHEDALRRD 149 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 FTINA+Y D + V+DY GG+ D+R RT++ IG R ED +R+LR RF A Sbjct: 150 FTINAMYYDPATQTVLDYHGGIADIRTRTLRIIGVPEARYREDPVRLLRVVRFAA 204 >gi|315657672|ref|ZP_07910554.1| polyA polymerase family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492144|gb|EFU81753.1| polyA polymerase family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 509 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 88/328 (26%), Positives = 147/328 (44%), Gaps = 34/328 (10%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ ++ D+D+ T+ PD + V +YGT+ F Sbjct: 58 ALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVGRNYGTLGARKGDDVF 117 Query: 90 DITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 +ITT RS D D R V F + D RRDFT+N++ +++D GGLNDL Sbjct: 118 EITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPTLELVDPTGGLNDLVA 177 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ D +D LRI+R RF A E ++D + + A ++ L I+S ER+ + Sbjct: 178 GILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMETMRERLTIVSPERVQA 236 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEI------FLDVQ----------EISLDQLSQVIE 251 E+++L+ A P + M + +++ LD+Q E SL L Q I Sbjct: 237 ELSRLMIASAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHKDVWEHSLTVLDQAIA 296 Query: 252 AEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 E + + D +LR ++ K + ++F +++F + + Sbjct: 297 QETGPDGPVPAPDLVLRLAAILHDIGKPAT----RRFEA-----GGVVTFHQHDVVGARI 347 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALH 336 + +K L Y DK I + +ALH Sbjct: 348 TRARLKALKY---DKATIRDVSRLVALH 372 >gi|163750934|ref|ZP_02158167.1| polyA polymerase [Shewanella benthica KT99] gi|161329358|gb|EDQ00355.1| polyA polymerase [Shewanella benthica KT99] Length = 448 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 16/243 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L+K K+ +VGG VRD L+ +D D+ T P+ + +F R Sbjct: 4 NAIKVLYRLHKSGFKAYLVGGGVRDILLGFQPKDFDVVTNATPEEIKGLFRNCRL----I 59 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRY-----AKVVFTRD-----WKADSLRRDFT 123 + I+ + ++ TLR + G A+ RD D+ RRDFT Sbjct: 60 GRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNAEGRLLRDNVYGTIDEDAERRDFT 119 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR RF G I Sbjct: 120 VNALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVRFATKLG-MTI 178 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + D + LK + + R++ EI KL N M + G+F+ +F V + Sbjct: 179 EKDTASPISELAPLLKDIPAARMYEEILKLFFNGQAQNNFNMMRDFGLFEPLFPLVNSLL 238 Query: 243 LDQ 245 +D+ Sbjct: 239 VDE 241 >gi|289674926|ref|ZP_06495816.1| poly(A) polymerase [Pseudomonas syringae pv. syringae FF5] Length = 408 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 215 KLDFGIEKHSAQPIRALAPM---LRDIPSARLFEEVLKLF 251 >gi|291303867|ref|YP_003515145.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Stackebrandtia nassauensis DSM 44728] gi|290573087|gb|ADD46052.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Stackebrandtia nassauensis DSM 44728] Length = 473 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 120/256 (46%), Gaps = 18/256 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD+++ D+D AT+ P+ I + + T +GTI + R + Sbjct: 31 LVGGPVRDAILRRDTVDLDFATSAHPEVTQAILEEHSSTIWTTGREFGTIGAMFRGHRVE 90 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 +TT R+D DG R +V + + D RRDFTINA+ G + D GGL DL Sbjct: 91 VTTFRADTY-DGVSRNPQVAYGDNLTDDLRRRDFTINAMAVSVPGHEFSDPFGGLTDLAQ 149 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +TI+ G +D LR++R RF + G ++D A + ++ +S+ER+ Sbjct: 150 QTIRTPGTPEDSFADDPLRMMRAARFTSQLG-FHVDPAVKTAMTNMARDIERISAERVRD 208 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEISLDQLSQ-----------VIEAEQ 254 E KL+ +P+ + + G+ +E L +++D+ +Q V A Sbjct: 209 EFVKLMGGTDPVPGLRLLVATGLAEEFLPELPALRMAIDEHAQHKDVYEHTLTVVRNAMS 268 Query: 255 VFEWKIDSLLRFIVLI 270 + E D LLR L+ Sbjct: 269 LEEDGPDVLLRIAALL 284 >gi|282863336|ref|ZP_06272395.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces sp. ACTE] gi|282561671|gb|EFB67214.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces sp. ACTE] Length = 505 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 22/259 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ Sbjct: 70 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVGIAFGTVGSQKDGYQI 129 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 +ITT RS+ R +V + + D +RRDFT+NA+ A + + +D GGL+DL Sbjct: 130 EITTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKEFVDPHGGLDDLAA 189 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ G +D LR+LR RF A + + D L A ++I+S+ER+ Sbjct: 190 RVLRTPGTPEESFSDDPLRMLRAARFAAQL-DFEVAPDVLTAMTDMAGRIEIVSAERVRE 248 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVIE 251 E+NKLL + +P + + G+ + DV E SL L Q I+ Sbjct: 249 ELNKLLLSGHPRKGLGLLVETGLADRVLPELPALRLERDEHHRHKDVYEHSLTVLEQAID 308 Query: 252 AEQVFEWKIDSLLRFIVLI 270 E E D +LR L+ Sbjct: 309 LE---EEGPDLVLRLAALL 324 >gi|111226195|ref|YP_716989.1| RNA nucleotidyltransferase [Frankia alni ACN14a] gi|111153727|emb|CAJ65485.1| RNA nucleotidyltransferase [Frankia alni ACN14a] Length = 494 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 15/227 (6%) Query: 31 IVGGAVRDSLMN----------LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +VGG+VRD+L+ + D+D AT P+RV+ I I++GT+ Sbjct: 43 LVGGSVRDALLGRPTTGATGAGGAPADLDFATDARPERVLEITRGWAEATWEAGIAFGTV 102 Query: 81 KIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDY 138 + R F+ITT RS+ R +V + +AD RRDFT+NA+ G +D Sbjct: 103 GLARRGLRFEITTYRSEAYDRQSRNPQVTYGDSLEADLSRRDFTVNAMAVSVPGHDFVDL 162 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-KGL 197 GG+ DL ++ +D LRILR RF A G + LV +++A+ + L Sbjct: 163 FGGMADLARGVLRTPASPAASFDDDPLRILRAARFEATLGLTPVPE--LVEAMRARTERL 220 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I+S ERI E+ KLL A +P+ + + G+ + +V + ++ Sbjct: 221 AIVSPERIRDELRKLLLAADPVAGLERLVEIGVADIVLPEVAAMRME 267 >gi|85859113|ref|YP_461315.1| poly A polymerase [Syntrophus aciditrophicus SB] gi|85722204|gb|ABC77147.1| poly A polymerase [Syntrophus aciditrophicus SB] Length = 495 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 103/424 (24%), Positives = 172/424 (40%), Gaps = 59/424 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L + ++ VGG VRD L + D DI T+ P+ + +F +T + I Sbjct: 73 GIVRRLKEAGHEAWFVGGCVRDYLRGVEAGDYDIVTSASPEAIQALFPRT----VGVGIR 128 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKV 135 +G + +I ++ T RS G Y + D LRRDFTINA+ D G++ Sbjct: 129 FGILIVIENGYSHEVATYRSP----GGYLE---------DVLRRDFTINAMLQDPDTGRI 175 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID VGG DL R I+ +G R ED LR+LR RF A+ +++ + L A Sbjct: 176 IDEVGGRADLEGRVIRAVGRPDERFAEDRLRMLRAVRFAANLA-FSVEQETLEAIQAHAP 234 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLD 244 ++ +S ER+ E+ +LL + + G+ +E+ +V + D Sbjct: 235 EIQEVSVERVADELTRLLTLGGAGEGMRLLMKTGLLEELLPEVAAMRGVKQPPKFHPEGD 294 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS---------------------MAK 283 + ++ + DS L + VL+ K + S + + Sbjct: 295 VWTHTVKMLDLMSIPADSRLAWGVLLHDVGKPDVQSRDHRGIHFYGHVQQGEILAEGILR 354 Query: 284 KFSLPREIRYFLISFFNCNF---NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN- 339 + PR ++ C+ N + + +K+L D ++ +L L N Sbjct: 355 RLRFPRADMECILGLIRCHMSFINVREMRTSRLKRLLR-SPDFDLLLELHRLDCLGSNGV 413 Query: 340 LTHQDTCFILQ-VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 L + C Q L+D PL L G D+++ G PG IL + +N S Sbjct: 414 LDSYEYCLQKQRELTDEQLRPPPL--LRGKDLLEMGYLPGALFREILNAVEDAQLNGSIA 471 Query: 399 LSQE 402 +E Sbjct: 472 TPEE 475 >gi|221632084|ref|YP_002521305.1| putative RNA nucleotidyltransferase [Thermomicrobium roseum DSM 5159] gi|221155983|gb|ACM05110.1| putative RNA nucleotidyltransferase [Thermomicrobium roseum DSM 5159] Length = 485 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 4/191 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 +VGG VRD L+ V D+D AT+ P+ + + + I T ++GTI ++ Sbjct: 45 LVGGVVRDLLLGRPVTDLDYATSAHPEETRCLGEEAGAESIYTVGEAFGTIGLVFAGVTV 104 Query: 90 DITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 +ITT R++ T R V F D RRDFT+NA+ G++ID GG DL Sbjct: 105 EITTYRTEWYPTLDRRPAVRFGDSLLEDLARRDFTVNAMAVHAVTGELIDPYGGQLDLER 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ +GD R ED LRILR RF A G +++ +A + L+ +S ERI Sbjct: 165 RLLRAVGDPFERFREDPLRILRAARFAAQLG-FEVEAQTRLAMQELASELQRVSVERIAL 223 Query: 208 EINKLLEAKNP 218 E+N+LL A P Sbjct: 224 ELNRLLVAPEP 234 >gi|15599921|ref|NP_253415.1| poly(A) polymerase [Pseudomonas aeruginosa PAO1] gi|107103826|ref|ZP_01367744.1| hypothetical protein PaerPA_01004897 [Pseudomonas aeruginosa PACS2] gi|218893822|ref|YP_002442691.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58] gi|254238536|ref|ZP_04931859.1| poly(A) polymerase [Pseudomonas aeruginosa C3719] gi|254244371|ref|ZP_04937693.1| poly(A) polymerase [Pseudomonas aeruginosa 2192] gi|296391553|ref|ZP_06881028.1| poly(A) polymerase [Pseudomonas aeruginosa PAb1] gi|313109707|ref|ZP_07795647.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa 39016] gi|9950987|gb|AAG08113.1|AE004886_5 poly(A) polymerase [Pseudomonas aeruginosa PAO1] gi|126170467|gb|EAZ55978.1| poly(A) polymerase [Pseudomonas aeruginosa C3719] gi|126197749|gb|EAZ61812.1| poly(A) polymerase [Pseudomonas aeruginosa 2192] gi|218774050|emb|CAW29866.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58] gi|310882149|gb|EFQ40743.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa 39016] Length = 467 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 14/221 (6%) Query: 6 QHKWFHDS---DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 QH D + + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V Sbjct: 30 QHSLRRDQFSRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAE 89 Query: 63 FSKTR-----YKVIPTSISYGTIKIICRKKYF----DITTLRSDLITDGRYAKVVFTRDW 113 F R +K++ I++ + + D R+ GR + Sbjct: 90 FRNARIIGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSL 149 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFTINALY D +++DY G++D+RNR I+ IGD R LED +R+LR R Sbjct: 150 EDDAQRRDFTINALYFDVTSERLLDYANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVR 209 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 F A + I+ + L+ + S R++ E+ KL Sbjct: 210 FAAKL-DFEIEKHSAAPIRRLAPLLREIPSARLFDEVLKLF 249 >gi|152998010|ref|YP_001342845.1| poly(A) polymerase [Marinomonas sp. MWYL1] gi|150838934|gb|ABR72910.1| poly(A) polymerase [Marinomonas sp. MWYL1] Length = 484 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 28/251 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK + +VGG VRD L+ + +D D+ T P+ V IFS +R Sbjct: 43 NAVKVLYRLNKAGFDAFLVGGCVRDHLIGIKPKDFDVVTNATPEEVHTIFSNSRL----I 98 Query: 74 SISYGTIKIICRKKYFDITTLRSDLIT-----------------DGRYAKVVFTRD---- 112 + + + ++ +++T R++ R A + RD Sbjct: 99 GRRFKLVHVTFGREIIEVSTFRANSAQDDSDDDDTQNSSLKGKDSARSAHGIVLRDNVYG 158 Query: 113 -WKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFT NALY + + + DY GGL D+ N+ I+ IGDA R ED +R+LR Sbjct: 159 NIEEDAERRDFTFNALYYNVKDFSIHDYCGGLKDIENKQIRIIGDARQRYQEDPVRMLRA 218 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF G + ++++ + L + R++ E+ KLL + N + + G+ Sbjct: 219 IRFAGKLGFE-LEAETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGIETFHLLRQYGL 277 Query: 231 FKEIFLDVQEI 241 F+ +F D + Sbjct: 278 FRYLFPDTDAL 288 >gi|116052874|ref|YP_793191.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588095|gb|ABJ14110.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14] Length = 467 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 14/221 (6%) Query: 6 QHKWFHDS---DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 QH D + + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V Sbjct: 30 QHSLRRDQFSRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAE 89 Query: 63 FSKTR-----YKVIPTSISYGTIKIICRKKYF----DITTLRSDLITDGRYAKVVFTRDW 113 F R +K++ I++ + + D R+ GR + Sbjct: 90 FRNARIIGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSL 149 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFTINALY D +++DY G++D+RNR I+ IGD R LED +R+LR R Sbjct: 150 EDDAQRRDFTINALYFDVTSERLLDYANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVR 209 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 F A + I+ + L+ + S R++ E+ KL Sbjct: 210 FAAKL-DFEIEKHSATPIRRLAPLLREIPSARLFDEVLKLF 249 >gi|325266879|ref|ZP_08133550.1| poly(A) polymerase [Kingella denitrificans ATCC 33394] gi|324981620|gb|EGC17261.1| poly(A) polymerase [Kingella denitrificans ATCC 33394] Length = 443 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 96/171 (56%), Gaps = 13/171 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYK 69 ++ +LS L++ ++ +VGGAVRD L+ + +D D+AT LP++V +F ++ R++ Sbjct: 37 VLKVLSGLHRAGFEAYLVGGAVRDLLLGKTPKDFDVATNALPEQVRGVFKRSRIIGRRFQ 96 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 ++ + TI++ + ++ S ++ D Y + D+ RRDFT NALY Sbjct: 97 IVHVMVGAETIEVSTFRGGGNVKHNESGRIVRDNAYGTLA------QDAFRRDFTCNALY 150 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D Q ++ID+ GL+D+R + + IGDA R +ED +RILR R G Sbjct: 151 YDVQNQQIIDFHNGLSDIRAKRLVMIGDAAERYVEDPVRILRAIRLSGKLG 201 >gi|239980804|ref|ZP_04703328.1| RNA nucleotidyltransferase [Streptomyces albus J1074] gi|291452663|ref|ZP_06592053.1| RNA nucleotidyltransferase [Streptomyces albus J1074] gi|291355612|gb|EFE82514.1| RNA nucleotidyltransferase [Streptomyces albus J1074] Length = 488 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 15/227 (6%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +VGG+VRD+L+ D+D T P++V+R+ V I++GT+ C+K+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEQVLRLVRPWADAVWEVGIAFGTVG--CQKRAV 102 Query: 89 ---------FDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVID 137 +ITT RS+ R +V + + D +RRDFT+NA+ A Q ID Sbjct: 103 VEGEEVTFEIEITTYRSEAYDRASRKPEVSYGDSIEDDLVRRDFTVNAMAVALPQKTFID 162 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL DL + ++ G +D LR++R RF A + ++ + + A + + Sbjct: 163 PYGGLEDLSAQVLRTPGTPEASFSDDPLRMMRAARFAAQL-DFDVAPEVVAAMTAMAERI 221 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I+S+ER+ E+NKLL + +P + + + G+ + ++ E+ L+ Sbjct: 222 TIVSAERVRDELNKLLLSTHPRKGLTLLVDTGLAAHVLPELPELRLE 268 >gi|66044085|ref|YP_233926.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a] gi|63254792|gb|AAY35888.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a] Length = 491 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 68 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 127 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 128 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 178 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 179 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 238 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 239 KLDFGIEKHSAQPIRALAPM---LRDIPSARLFEEVLKLF 275 >gi|303239594|ref|ZP_07326119.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] gi|302592765|gb|EFL62488.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] Length = 438 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 13/202 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ LN K+ +VGG VRDS++N +D DI+T+ PD V +F KT I T I + Sbjct: 16 IIKKLNDFSFKAYVVGGCVRDSILNKQPKDWDISTSATPDEVKALFDKT----IDTGIKH 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GT+ ++ ++TT R+ + T D RD T+N + + D Sbjct: 72 GTVSVVVNNIAIEVTTFRTGSTQNNN----CLTTDLSY----RDLTMNTIAFHPSEGLFD 123 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 G+ D++N I+ +G+ R ED LR+LR RF A G +I+ L A + + Sbjct: 124 PYSGVEDIKNAVIRAVGNPCERFKEDPLRMLRAVRFCATLG-FDIEESTLDAIKRNSALI 182 Query: 198 KILSSERIWSEINKLLEAKNPL 219 K S ERI E+ K+L + PL Sbjct: 183 KNTSQERIRDELTKILISSRPL 204 >gi|88705696|ref|ZP_01103406.1| polyA polymerase [Congregibacter litoralis KT71] gi|88700209|gb|EAQ97318.1| polyA polymerase [Congregibacter litoralis KT71] Length = 403 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 19/237 (8%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPT 73 ++ L E ++ +VGGAVRD L+ +D DIAT P+ V +F +R ++++ Sbjct: 1 MARLRDKEHQAYLVGGAVRDLLLGGHPKDFDIATDATPEEVHALFGNSRIIGRRFRIVHV 60 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRD-----WKADSLRRDFTINA 126 I++ + + D T T G R ++ + RD + D++RRD T+NA Sbjct: 61 RFGREVIEVTTFRGHHDDTE-----ATTGAKRSSRGLLLRDNVFGTLEEDAVRRDLTVNA 115 Query: 127 LYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D +V D VGGL+DL R ++ IGD R ED +R+LR RF A G N++ Sbjct: 116 LYYDSGSFEVFDQVGGLDDLEARQVRVIGDPATRYREDPVRMLRCLRFAAKLG-FNVEKS 174 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 A + L + R++ E KL N + + F+ +F D ++ Sbjct: 175 SGAAIPRLAALLDDIPPARLFDEFGKLFLTGNAQATLRLLREYRCFEHLFPDSARLA 231 >gi|256398126|ref|YP_003119690.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Catenulispora acidiphila DSM 44928] gi|256364352|gb|ACU77849.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Catenulispora acidiphila DSM 44928] Length = 491 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 7/221 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ +D+D T P++V+++ V I++GT+ Sbjct: 46 ALVGGPVRDALLGRLSEDLDFTTDARPEQVLKLMQGWAEAVWDVGIAFGTVGAQKAGAKL 105 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQG-KVIDYVGGLN 143 +ITT RS+ + R +V + + D RRDFT+NA L AD + + +D GGL Sbjct: 106 EITTFRSEAYDRESRKPEVAYGDSIEDDLFRRDFTVNAMAVRLSADPEDFEFVDPYGGLA 165 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL ++ G +D LR++R RF A G ++ + A + + L I+S+E Sbjct: 166 DLGAGVLRTPGTPEMSFSDDPLRMMRAARFAAQLG-FDVAPEVRTAMTEMAERLTIVSAE 224 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 R+ E++KLL A NP + + + G+ + ++ ++ L+ Sbjct: 225 RVQVELSKLLLAPNPRAGLALLVDTGLADIVVPELPKLRLE 265 >gi|290959021|ref|YP_003490203.1| RNA nucleotidyltransferase [Streptomyces scabiei 87.22] gi|260648547|emb|CBG71658.1| putative RNA nucleotidyltransferase [Streptomyces scabiei 87.22] Length = 482 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 5/219 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I + I++GT+ Sbjct: 44 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADALWEVGIAFGTVGAQKDGYQI 103 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + ID GGL DL Sbjct: 104 EVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKEFIDPHGGLEDLSA 163 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIW 206 R ++ G +D LR++R RF A G + +V+++ A G L+I+S+ER+ Sbjct: 164 RVLRTPGTPEDSFSDDPLRMMRAARFAAQLGFEVAPE--VVSAMTAMAGRLEIVSTERVR 221 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 E+NKL+ + +P + + G+ + + ++ + L++ Sbjct: 222 DELNKLILSAHPREGLSLLVETGLAEHVLPELPALRLER 260 >gi|213970146|ref|ZP_03398277.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1] gi|213925027|gb|EEB58591.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1] Length = 491 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 68 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 127 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 128 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 178 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 179 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 238 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 239 KLDFGIEKHSAQPIRALAPM---LRDIPSARLFEEVLKLF 275 >gi|269217865|ref|ZP_06161719.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212800|gb|EEZ79140.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 520 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 11/224 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + L + D D+ T+ P+ R+ S +GTI + Sbjct: 52 SLVGGPVRDAFLGLPIHDFDLTTSAPPEITERLLSSWGAATWDVGREFGTIGSVRDGVTA 111 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 ++TT RSD G R KV F R + D RRDFT+NA+ + +++D GGL+DL Sbjct: 112 EVTTYRSDSYEVGSRKPKVDFGRTLEGDLSRRDFTVNAMAVRLPELELVDPCGGLDDLVG 171 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ A +D LRI+R RF A G ++ D + A + + L I+S+ERI + Sbjct: 172 GVLRTPVTAVQSFDDDPLRIMRAARFAAQLG-FDVGEDVVSAMAEMAERLAIVSAERIRA 230 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 E+ +L+ + P I + ++ V ++ L +++Q+ E Sbjct: 231 ELERLMLSPAPRRGIELL--------VYTGVADVVLPEIAQLRE 266 >gi|71733402|ref|YP_273137.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553955|gb|AAZ33166.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 491 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 36/221 (16%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 68 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 127 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 128 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 178 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 179 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 238 Query: 176 H--YG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G EK+ S + S+ L+ + S R++ E+ KL Sbjct: 239 KLDFGIEKH--SAQPIRSLAPM--LRDIPSARLFEEVLKLF 275 >gi|25029484|ref|NP_739538.1| putative tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314] gi|259508336|ref|ZP_05751236.1| polyA polymerase [Corynebacterium efficiens YS-314] gi|23494773|dbj|BAC19738.1| putative tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314] gi|259164070|gb|EEW48624.1| polyA polymerase [Corynebacterium efficiens YS-314] Length = 489 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 10/222 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+ + D+D T+ P+ I V T I++GT+ + + Sbjct: 51 LVGGSVRDAFLGTLGNDLDFTTSAPPEITRAILDDYAEVVWDTGIAFGTLSAEKHGQQIE 110 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVI----DYVGGLND 144 ITT RSD + DG R +V F D +RRDF +NA+ + G D VGGL+D Sbjct: 111 ITTFRSD-VYDGTSRNPEVTFGDTLDGDLIRRDFKVNAMAVEIAGDGTLSFHDPVGGLDD 169 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSE 203 L +R + +D LR+LR RF + G +D +V ++ G + +++E Sbjct: 170 LLHRRLDTPAAPEQSFNDDPLRMLRAARFVSQLG--FTVADCVVTAMTEMAGQISRITAE 227 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 R+ E++KL+ +P I M + GI + IF ++ + + Q Sbjct: 228 RVQVELDKLMLGAHPEEGIDLMVDTGIAEVIFPEIPAMQMTQ 269 >gi|297200922|ref|ZP_06918319.1| tRNA adenylyltransferase [Streptomyces sviceus ATCC 29083] gi|197716906|gb|EDY60940.1| tRNA adenylyltransferase [Streptomyces sviceus ATCC 29083] Length = 480 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 3/217 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P V++I V I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVWEVGIAFGTVGAQKDGYLI 104 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + K ID GGL+DL Sbjct: 105 EVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKKFIDPHGGLDDLAA 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ G +D LR++R RF A + + + + A + L+I+S+ER+ Sbjct: 165 RVLRTPGTPEASFSDDPLRMMRAARFAAQL-DFEVAPEVVTAMTEMSGRLEIVSAERVRD 223 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+NKL+ + +P + + + G+ + + ++ + L+ Sbjct: 224 ELNKLILSAHPRKGLTLLVDTGLAEHVLPELPALRLE 260 >gi|262273771|ref|ZP_06051584.1| poly(A) polymerase [Grimontia hollisae CIP 101886] gi|262222186|gb|EEY73498.1| poly(A) polymerase [Grimontia hollisae CIP 101886] Length = 451 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 19/233 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LNK ++ +VGG VRD L+N +D DIAT P+ V ++F R Sbjct: 35 LKVLYRLNKAGFEAYLVGGGVRDLLLNKQPKDFDIATNATPEEVRKLFRNCRL----VGR 90 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRD-----WKADSLRRDFTI 124 + I+ + ++ T R D R + RD D+ RRDFTI Sbjct: 91 RFRLAHILFGRDVIEVATFRGHHAGDKSDKAAARSNDGMLLRDNVYGTIDEDAERRDFTI 150 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY + V DY GG+ DL+NRTI+ IGD R ED +R+LR RF A + Sbjct: 151 NALYYNIDDFSVRDYAGGVEDLKNRTIRLIGDPETRYREDPVRMLRAVRFAAKLDMRI-- 208 Query: 184 SDGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ A I A L+ + + R++ E KLL++ L + + +F +F Sbjct: 209 NEATAAPIPALAHLLRDIPAARLFEESLKLLQSGQGLATYRLLRDFNLFSPLF 261 >gi|94311846|ref|YP_585056.1| poly(A) polymerase [Cupriavidus metallidurans CH34] gi|93355698|gb|ABF09787.1| poly(A) polymerase I polynucleotide adenylyltransferase [Cupriavidus metallidurans CH34] Length = 529 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 128/259 (49%), Gaps = 29/259 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 44 NAVKVTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSRIIGRRF 103 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRY----------------AKVVFT 110 +++ + G + I F + + S+ + +GR +V+ Sbjct: 104 QIVHVTFYGGREQEIIEVSTFRALVDAVASETLPEGRRLKRAELDSKTHAIDASGRVLRD 163 Query: 111 RDWKA---DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 W D+ RRDFTINA+Y D + + DY G+ D+R RT++ IGD R ED +R Sbjct: 164 NVWGTQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPVTRYREDPVR 223 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A G +ID + + + S R++ E+ KLL + + ++ + Sbjct: 224 MLRVVRFAAKTG-FSIDDHTREPIVGLASLIHNVPSARLFDEMLKLLMSGHAWASLQELR 282 Query: 227 NGGIFKEIFLDVQEISLDQ 245 G+ K + L + +++L+Q Sbjct: 283 KAGLHKGL-LPLLDVALEQ 300 >gi|239942688|ref|ZP_04694625.1| putative RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 15998] gi|239989147|ref|ZP_04709811.1| putative RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 11379] gi|291446152|ref|ZP_06585542.1| RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 15998] gi|291349099|gb|EFE76003.1| RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 15998] Length = 480 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 22/259 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVGIAFGTVGSQKDGYQI 104 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + +D GGL DL + Sbjct: 105 EVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVALPEKEFVDPYGGLKDLAD 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ G +D LR+LR RF A + + + + A + + I+S+ER+ Sbjct: 165 RVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPEVITAMTEMAARIDIVSAERVRD 223 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVIE 251 E+NKLL +++P + + + G+ + DV E SL L Q I+ Sbjct: 224 ELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHHRHKDVYEHSLTVLEQAID 283 Query: 252 AEQVFEWKIDSLLRFIVLI 270 E E D +LR L+ Sbjct: 284 LE---EGGPDLVLRLAALL 299 >gi|113869035|ref|YP_727524.1| Poly(A) polymerase [Ralstonia eutropha H16] gi|113527811|emb|CAJ94156.1| Poly(A) polymerase [Ralstonia eutropha H16] Length = 513 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 37/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + ++ IVGGAVRD L+ + +D D+AT PD+V +F ++ R+ Sbjct: 44 NAVKVTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRIIGRRF 103 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRY----------------AKVVFT 110 +++ + G + I F + + S+ + +GR +V+ Sbjct: 104 QIVHVTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKTHAIDASGRVLRD 163 Query: 111 RDWKA---DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 W + D+ RRDFTINA+Y D + + DY G+ D+R RT++ IGD R ED +R Sbjct: 164 NVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPVTRYREDPIR 223 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAI 222 +LR RF A + + D D A+ GL L S R++ E+ KLL + + ++ Sbjct: 224 MLRVVRFAA---KTSFDID--EATRHPIAGLASLIHNVPSARLFDEMLKLLMSGHAWASL 278 Query: 223 VHMYNGGIFKEIFLDVQEISLDQ 245 + G+ + + L + +++L+Q Sbjct: 279 QELRKAGLHQGL-LPLLDVALEQ 300 >gi|258655493|ref|YP_003204649.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nakamurella multipartita DSM 44233] gi|258558718|gb|ACV81660.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nakamurella multipartita DSM 44233] Length = 464 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 7/219 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P++V+R+ + T I +GT+ + + Sbjct: 27 LVGGSVRDALLGRLEDDLDFTTDARPEQVLRLVKGWAESIWQTGIEFGTVGLAKAGFRVE 86 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRN 147 ITT RSDL DG R +V F + D LRRDF +NA+ G D GL L Sbjct: 87 ITTFRSDLY-DGETRNPEVTFGDTLEGDLLRRDFAVNAMAVSVPGHTFTDPFHGLTQLAE 145 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIW 206 R + G +D LR+LR RF + G +VA++ A G + ++ ER+ Sbjct: 146 RVLDTPGTPEQSFRDDPLRMLRAARFVSQLGFHPAPR--VVAAMTAMAGEIDRITPERVG 203 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 +E+ KL+ ++P + + + G+ I ++ + L++ Sbjct: 204 AELVKLIMGEHPREGLRLLTDTGLADRILPELPALRLER 242 >gi|302185887|ref|ZP_07262560.1| poly(A) polymerase [Pseudomonas syringae pv. syringae 642] gi|330941558|gb|EGH44344.1| poly(A) polymerase [Pseudomonas syringae pv. pisi str. 1704B] gi|330954360|gb|EGH54620.1| poly(A) polymerase [Pseudomonas syringae Cit 7] gi|330977389|gb|EGH77338.1| poly(A) polymerase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 467 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 215 KLDFGIEKHSAQPIRALAPM---LRDIPSARLFEEVLKLF 251 >gi|257484045|ref|ZP_05638086.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987743|gb|EGH85846.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013061|gb|EGH93117.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 467 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 29/180 (16%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 >gi|152983716|ref|YP_001350768.1| poly(A) polymerase [Pseudomonas aeruginosa PA7] gi|150958874|gb|ABR80899.1| poly(A) polymerase [Pseudomonas aeruginosa PA7] Length = 467 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 14/221 (6%) Query: 6 QHKWFHDS---DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 QH D + + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V Sbjct: 30 QHSLRRDQFSRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAE 89 Query: 63 FSKTR-----YKVIPTSISYGTIKIICRKKYF----DITTLRSDLITDGRYAKVVFTRDW 113 F R +K++ I++ + + D R+ GR + Sbjct: 90 FRNARIIGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSL 149 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFTINALY D +++DY G++D+RNR I+ IGD R LED +R+LR R Sbjct: 150 EDDAQRRDFTINALYFDVTSERLLDYAHGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVR 209 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 F A + I+ + L+ + S R++ E+ KL Sbjct: 210 FAAKL-DFEIEKHSAAPIRRLAPLLREIPSARLFDEVLKLF 249 >gi|298485543|ref|ZP_07003625.1| Poly(A) polymerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159943|gb|EFI00982.1| Poly(A) polymerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320326088|gb|EFW82145.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. B076] Length = 467 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 29/180 (16%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 >gi|289628855|ref|ZP_06461809.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651028|ref|ZP_06482371.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 2250] gi|330867395|gb|EGH02104.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890665|gb|EGH23326.1| poly(A) polymerase [Pseudomonas syringae pv. mori str. 301020] Length = 467 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 29/180 (16%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 >gi|154508262|ref|ZP_02043904.1| hypothetical protein ACTODO_00758 [Actinomyces odontolyticus ATCC 17982] gi|293191173|ref|ZP_06609106.1| tRNA adenylyltransferase [Actinomyces odontolyticus F0309] gi|153797896|gb|EDN80316.1| hypothetical protein ACTODO_00758 [Actinomyces odontolyticus ATCC 17982] gi|292820594|gb|EFF79563.1| tRNA adenylyltransferase [Actinomyces odontolyticus F0309] Length = 509 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 36/344 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + ++ ++ ++ +VGG VRD+ + ++ D D+ T+ P+R + ++ Sbjct: 15 IMELGTIFDEAGEELALVGGPVRDAFLGVTPHDFDMTTSARPERTEELLAQWGNATWDIG 74 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI ++TT R+D G R +V F + D RRDFT+NA+ Q Sbjct: 75 KEFGTIGGRRGDLVVEVTTYRTDEYEIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRLPQ 134 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GGL DL + ++ A +D LRI+R RF A G ++D D + A Sbjct: 135 MALVDPCGGLADLADGNLRTPVSAEQSFDDDPLRIMRAARFSAQLG-LDVDMDVMNAMET 193 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL---------------- 236 L+I+S+ERI +E+ +L+ + P I M + G+ +I L Sbjct: 194 MASRLEIVSAERIRAELERLIISPYPRRGIELMVHTGV-ADIVLPEVAGLVSTVDEHKRH 252 Query: 237 -DVQEISLDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 DV E +L + Q ++ E + + D +LRF L+ K + ++F + Sbjct: 253 KDVYEHTLTVVEQAMDLETGPDGAVPAPDFILRFAALMHDVGKPAT----RRFEPNGTVS 308 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 + + K++ L+ DK I + +ALH Sbjct: 309 FHHHEIVGAKMTR--------KRMKALHFDKATIEAVSNLVALH 344 >gi|331019095|gb|EGH99151.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 467 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 215 KLDFGIEKHSAQPIRALAPM---LRDIPSARLFEEVLKLF 251 >gi|28868183|ref|NP_790802.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000] gi|301384667|ref|ZP_07233085.1| poly(A) polymerase [Pseudomonas syringae pv. tomato Max13] gi|302061944|ref|ZP_07253485.1| poly(A) polymerase [Pseudomonas syringae pv. tomato K40] gi|302134196|ref|ZP_07260186.1| poly(A) polymerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851420|gb|AAO54497.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000] gi|330872464|gb|EGH06613.1| poly(A) polymerase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967200|gb|EGH67460.1| poly(A) polymerase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 467 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 215 KLDFGIEKHSAQPIRALAPM---LRDIPSARLFEEVLKLF 251 >gi|146292218|ref|YP_001182642.1| metal dependent phosphohydrolase [Shewanella putrefaciens CN-32] gi|145563908|gb|ABP74843.1| metal dependent phosphohydrolase [Shewanella putrefaciens CN-32] Length = 420 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 27/261 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + I +++Y Sbjct: 13 LVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPV-----FLHPITQQEYA 67 Query: 90 DITTLRSDLITDGR---YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G YA T + D LRRD TINA+ D++G + D G+ DL Sbjct: 68 LARTERKVGLGYGGFSCYASPDVT--LEQDLLRRDLTINAIAQDEEGNLHDPFNGIGDLN 125 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSS 202 R ++ + DA +ED LR+LR RF F H G + DS L+ I L L+ Sbjct: 126 ARLLRHVSDA---FIEDPLRVLRVARFAARFHHLGFQIADSTLQLMQQIAQSGELNALTP 182 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E++K L NP + G K +F + LD L + + E+ + +ID+ Sbjct: 183 ERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPE-----LDALFGIPQPEK-WHPEIDT 236 Query: 263 LLRFIVLISWQDKKSILSMAK 283 L +++++ + +IL+ K Sbjct: 237 GLHTLMVLA---QAAILTQDK 254 >gi|294788727|ref|ZP_06753968.1| poly(A) polymerase [Simonsiella muelleri ATCC 29453] gi|294483209|gb|EFG30895.1| poly(A) polymerase [Simonsiella muelleri ATCC 29453] Length = 438 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 15/193 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRDSL+ ++ +D D+AT P++V ++F ++R + + ++ K+ Sbjct: 49 EAYLVGGAVRDSLLGVAPKDFDVATNARPEQVEKLFRRSRI----IGRRFPIVHVMSGKE 104 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALYADQ-QGKVIDYVGGLN 143 +++T RS ++V + + D++RRDFT NALY D + K+ID+ G+N Sbjct: 105 TVEVSTFRSGKTRQNANGRIVKDNGYGTLEQDAMRRDFTCNALYYDVIRHKIIDFHDGMN 164 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 D+R++ + IG+ R ED +RILR R G+ N D A A +L +E Sbjct: 165 DIRHKKLVMIGEPAERYQEDPVRILRAIRL---SGKLNFQIDENTAEPIASHA-HLLQNE 220 Query: 204 ---RIWSEINKLL 213 R++ E+ K+L Sbjct: 221 PVSRLFDELMKIL 233 >gi|330960809|gb|EGH61069.1| poly(A) polymerase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 467 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 215 KLDFGIEKHSAQPIRALAPM---LRDIPSARLFEEVLKLF 251 >gi|120599846|ref|YP_964420.1| metal dependent phosphohydrolase [Shewanella sp. W3-18-1] gi|120559939|gb|ABM25866.1| metal dependent phosphohydrolase [Shewanella sp. W3-18-1] Length = 420 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 27/261 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + I +++Y Sbjct: 13 LVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPV-----FLHPITQQEYA 67 Query: 90 DITTLRSDLITDGR---YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G YA T + D LRRD TINA+ D++G + D G+ DL Sbjct: 68 LARTERKVGLGYGGFSCYASPDVT--LEQDLLRRDLTINAIAQDEEGNLHDPFNGIGDLN 125 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSS 202 R ++ + DA +ED LR+LR RF F H G + DS L+ I L L+ Sbjct: 126 ARLLRHVSDA---FIEDPLRVLRVARFAARFHHLGFQIADSTLQLMQQIAQSGELNALTP 182 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E++K L NP + G K +F + LD L + + E+ + +ID+ Sbjct: 183 ERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPE-----LDALFGIPQPEK-WHPEIDT 236 Query: 263 LLRFIVLISWQDKKSILSMAK 283 L +++++ + +IL+ K Sbjct: 237 GLHTLMVLA---QAAILTQDK 254 >gi|256089935|ref|XP_002580992.1| poly(A) polymerase [Schistosoma mansoni] gi|238666750|emb|CAZ37231.1| poly(A) polymerase, putative [Schistosoma mansoni] Length = 135 Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 29/114 (25%) Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY--ADQQ-------------- 132 F++TTLR D++TDGR+++VVFT +WK D+ RRD T+N+++ D Q Sbjct: 3 FEVTTLRVDVVTDGRHSEVVFTNNWKLDAERRDLTVNSMFLEVDMQGLFDEFNEATTDSS 62 Query: 133 -------------GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 G ++DY G +DL+N I+F+GD RI EDYLRILR+FRF Sbjct: 63 ANENNTNNKRRVLGHLLDYFNGRDDLKNHRIRFVGDPDARIKEDYLRILRYFRF 116 >gi|108805591|ref|YP_645528.1| polynucleotide adenylyltransferase region [Rubrobacter xylanophilus DSM 9941] gi|108766834|gb|ABG05716.1| Polynucleotide adenylyltransferase region [Rubrobacter xylanophilus DSM 9941] Length = 510 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 9/204 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD+L +++D AT P + R+ + +GTI + Sbjct: 30 LVGGYVRDALSGRRGEEVDAATDARPPEIKRLLRPHAGYMWDVGERFGTIGAAVDGYRVE 89 Query: 91 ITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNR 148 +TT RSD +G R+ +V F D RRDFTINA+ AD G +ID G DL Sbjct: 90 VTTYRSDRYAEGDRHPEVSFGESLMGDLARRDFTINAVAADALSGGIIDPFEGRRDLELG 149 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG--EK--NIDSDGLVASIKAKKGLKILSSER 204 I+ +GD R+ ED LR+LR RF A EK + +D A + + L+ +S+ER Sbjct: 150 IIRPVGDPLERMREDPLRMLRAVRFVATLSTPEKPFEMTADLERAIRENARWLESISAER 209 Query: 205 IWSEINKLLEAKNP---LNAIVHM 225 I E +++L + NP L A+V + Sbjct: 210 IREEFDRILLSPNPALGLRALVRL 233 >gi|319425518|gb|ADV53592.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella putrefaciens 200] Length = 412 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 27/261 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + I +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPV-----FLHPITQQEYA 59 Query: 90 DITTLRSDLITDGR---YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G YA T + D LRRD TINA+ D++G + D G+ DL Sbjct: 60 LARTERKVGLGYGGFSCYASPDVT--LEQDLLRRDLTINAIAQDEEGNLHDPFNGIGDLN 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSS 202 R ++ + DA +ED LR+LR RF F H G + DS L+ I L L+ Sbjct: 118 ARLLRHVSDA---FIEDPLRVLRVARFAARFHHIGFQIADSTLQLMQQIAQSGELNALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E++K L NP + G K +F + LD L + + E+ + +ID+ Sbjct: 175 ERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPE-----LDALFGIPQPEK-WHPEIDT 228 Query: 263 LLRFIVLISWQDKKSILSMAK 283 L +++++ + +IL+ K Sbjct: 229 GLHTLMVLA---QAAILTQDK 246 >gi|99034449|ref|ZP_01314448.1| hypothetical protein Wendoof_01000748 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 252 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 19/260 (7%) Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R + FIG+A RI EDYLRILR FRF A ++ + L K ++ LS ERI Sbjct: 1 RRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILSVCKKHSHMIQNLSGERIRD 60 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 EI KLLE +P + M + ++I +E+ + LS + D+L++ Sbjct: 61 EILKLLECNDPFPTLKSMQESDVLQKII--PKEVKCEILSSPL------LLGTDALVKLA 112 Query: 268 VLISWQDKKSILSMAK---KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 +L+ K LS+ + KF + + F N + LS E KK L+G ++ Sbjct: 113 LLLRATKKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGREL 172 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 +KI N+ + +S + P FPL+GDD++ G PGK +G Sbjct: 173 YCDLVKICGVESGENVD--------EYISFANTFNIPKFPLSGDDLISIGHQPGKSLGRN 224 Query: 385 LVHCKQEWINSSFQLSQEDL 404 L KQ W +SS+ L++E+L Sbjct: 225 LELLKQHWEDSSYTLTKEEL 244 >gi|118465833|ref|YP_884405.1| tRNA adenylyltransferase [Mycobacterium avium 104] gi|118167120|gb|ABK68017.1| tRNA adenylyltransferase [Mycobacterium avium 104] Length = 480 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 8/225 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PD+V +I + + T I +GT+ + + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPDQVQQILRRWADNLWDTGIEFGTVGVGKGDRRLE 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R +V F + D +RRDFT NA+ D G+ +D +GGL L Sbjct: 101 ITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTTNAMAVRITPDGPGEFLDPLGGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R R + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 161 RQRVLDTPATPEESFGDDPLRMLRAARFVSQLG-FTVAPRVREAIERMAPQLARISAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 +E++KL+ +P+ I + + G+ + + ++ ++++D+ Q Sbjct: 220 AAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAIDEHHQ 264 >gi|170719922|ref|YP_001747610.1| poly(A) polymerase [Pseudomonas putida W619] gi|169757925|gb|ACA71241.1| poly(A) polymerase [Pseudomonas putida W619] Length = 462 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQGAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDIT----TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I++ + + + RS GR + + D+ RRDFTINA Sbjct: 103 VHVHFGREIIEVATFRAHHSEDDQGDSHRSSHNASGRILRDNVYGSLEEDAQRRDFTINA 162 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LY D +V+DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 163 LYYDPVSERVLDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAA 212 >gi|320330254|gb|EFW86239.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4] Length = 467 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 29/180 (16%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATNATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 >gi|45359347|gb|AAS58929.1| polyA polymerase [Rickettsia aeschlimannii] Length = 115 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/114 (49%), Positives = 71/114 (62%), Gaps = 4/114 (3%) Query: 119 RRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINAL Y + K+ DY G DL+ + FIG+A RI EDYLRILRFFRF ++Y Sbjct: 1 RRDFTINALSYCPFKNKIYDYFEGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYY 60 Query: 178 GEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 N DG + KA K GLK LS ERI SE++K++ +K + M+ GI Sbjct: 61 A--NQLDDGNFKACKALKDGLKTLSRERIKSEMDKIIVSKRAAQILKAMFEIGI 112 >gi|87121697|ref|ZP_01077584.1| polyA polymerase [Marinomonas sp. MED121] gi|86162948|gb|EAQ64226.1| polyA polymerase [Marinomonas sp. MED121] Length = 478 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 23/244 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LNK + +VGG +RD L++L+ +D D+ T P+ V +FS +R Sbjct: 45 VKVLYRLNKAGFDAFLVGGCIRDHLIDLAPKDFDVVTNATPEEVHNLFSNSRL----IGR 100 Query: 76 SYGTIKIICRKKYFDITTLRS-----------DLITD-GRYAKVVFTR-----DWKADSL 118 + + + ++ +++T R+ D +D R A + R D + D+ Sbjct: 101 RFRLVHVTFGREIIEVSTFRATAQQSEDSKKDDKHSDSARSAHGMILRDNIFGDIEQDAE 160 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT NALY D + DY GGL D+ + ++ IGDA R ED +R+LR RF A Sbjct: 161 RRDFTFNALYYDISDFSIHDYCGGLEDIAAKKVRIIGDAKLRYQEDPVRMLRAIRFAAKL 220 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+++ + L + R++ E+ KLL + N + + G+F+ +F + Sbjct: 221 -DFDIEAETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGVTTYKLLREYGLFRYLFPE 279 Query: 238 VQEI 241 E+ Sbjct: 280 TDEL 283 >gi|299065813|emb|CBJ36991.1| poly(A) polymerase I [Ralstonia solanacearum CMR15] Length = 515 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 129/263 (49%), Gaps = 37/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 69 NAVKVTSTLQEAGYGAFIVGGAVRDLLLGIKPKDFDVATNATPEQVEALFRRSRIIGRRF 128 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + S+ + G+ K RD Sbjct: 129 QIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHAVDASGRVLRD 188 Query: 113 --WKA---DSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 W D+ RRDFT+NA+Y ADQ V DY G+ D+R R ++ IGD H R ED Sbjct: 189 NVWGTQAEDATRRDFTVNAMYYNPADQ--TVHDYHHGMEDMRARLLRMIGDPHTRYREDP 246 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAI 222 +R+LR RF A G D D + A+ G I + + R++ E+ KLL + + ++ Sbjct: 247 VRMLRAVRFAAKTG---FDIDPATRAPIAELGALIHNVPAARLFDEMLKLLMSGHAWASL 303 Query: 223 VHMYNGGIFKEIFLDVQEISLDQ 245 + G+ + + L + +++L+Q Sbjct: 304 QELRKAGLHRGL-LPLLDVALEQ 325 >gi|297180382|gb|ADI16599.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma proteobacterium HF0010_01E20] Length = 447 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 16/216 (7%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K D++ + ++ +LN ++ +VGG VRD+L + +D D+AT + V ++F ++ Sbjct: 50 RKQISDTNALTVIEVLNANGFQAYLVGGCVRDALCGVKPKDFDVATNATLETVRQLFRRS 109 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLR---SDLITDGRYAKVVFTRD-----WKADSL 118 R + + + + +++T R SD I K + RD D+ Sbjct: 110 RI----VGKRFPIVHVRFGRDLIEVSTFRQSISDKIVHD--DKGMILRDNAFGTLHEDAF 163 Query: 119 RRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT NALY D ++ID+V G+ D++ + ++FIGD R+ ED +R+LR RF A Sbjct: 164 RRDFTANALYYDPNSDEIIDFVDGVADIKRKLLRFIGDPKTRLAEDPVRMLRAIRFSAKL 223 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 G +ID L + + LK +S R++ E KL Sbjct: 224 G-FSIDQQILNYTNETANSLKTVSPARLFDEFLKLF 258 >gi|89894039|ref|YP_517526.1| hypothetical protein DSY1293 [Desulfitobacterium hafniense Y51] gi|89333487|dbj|BAE83082.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 531 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 17/193 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRD L+N +D+D I + + + + Y + + T+ + + + D Sbjct: 22 IVGGTVRDHLLNRPGKDVDGIIPIPLEELEKHLREWGYHPLKIGAKHQTLSVFQQGQRMD 81 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRT 149 I DL +AD+LRRDFTINA++ D + G++ID + G DL+N+ Sbjct: 82 INFFDGDL---------------EADALRRDFTINAVFQDARTGELIDPLQGREDLKNKL 126 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ G+ R ED +RILR RF YG +I+ D ++ LK ++SER E+ Sbjct: 127 LRACGNPWERFREDPVRILRMVRFSVQYG-MDIEEDTFRSAQSLLPELKHVASERTSEEL 185 Query: 210 NKLLEAKNPLNAI 222 ++L +P I Sbjct: 186 GRILTLADPAAGI 198 >gi|17547346|ref|NP_520748.1| polynucleotide adenylyltransferase [Ralstonia solanacearum GMI1000] gi|17429649|emb|CAD16334.1| probable polynucleotide adenylyltransferase protein [Ralstonia solanacearum GMI1000] Length = 514 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 129/263 (49%), Gaps = 37/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 69 NAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVEALFRRSRIIGRRF 128 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + S+ + G+ K RD Sbjct: 129 QIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHAVDASGRVLRD 188 Query: 113 --WKA---DSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 W D+ RRDFT+NA+Y ADQ V DY G+ D+R R ++ IGD H R ED Sbjct: 189 NVWGTQAEDATRRDFTVNAMYYNPADQ--TVHDYHRGMEDMRARLLRMIGDPHTRYREDP 246 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAI 222 +R+LR RF A G D D + A+ G I + + R++ E+ KLL + + ++ Sbjct: 247 VRMLRVVRFAAKTG---FDIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASL 303 Query: 223 VHMYNGGIFKEIFLDVQEISLDQ 245 + G+ + + L + +++L+Q Sbjct: 304 QELRKAGLHRGL-LPLLDVALEQ 325 >gi|326778131|ref|ZP_08237396.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces cf. griseus XylebKG-1] gi|326658464|gb|EGE43310.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces cf. griseus XylebKG-1] Length = 487 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 22/259 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ Sbjct: 52 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVGIAFGTVGSQKDGYQI 111 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + +D GGL DL + Sbjct: 112 EVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVALPEKEFVDPYGGLKDLAD 171 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ G +D LR+LR RF A + + + + A + + I+S+ER+ Sbjct: 172 RVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPEVVTAMTEMAARIDIVSAERVRD 230 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVIE 251 E+NKLL +++P + + + G+ + DV E SL L Q I+ Sbjct: 231 ELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHHRHKDVYEHSLTVLEQAID 290 Query: 252 AEQVFEWKIDSLLRFIVLI 270 E E D +LR L+ Sbjct: 291 LE---EDGPDLVLRLAALL 306 >gi|293610397|ref|ZP_06692698.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827629|gb|EFF85993.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 487 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++ V+D+ ++D++N+T++ +GD R ED +R+LR RF A K IDSD Sbjct: 135 YYQPRKSIVLDFCKAIDDVKNKTLRLLGDPAQRFEEDPVRMLRTLRFAAKLNFK-IDSDI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + + + L+ +S R++ E KL + + + G++K++F D+Q Sbjct: 194 LDIFDAEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIQ 247 >gi|3650360|emb|CAA77045.1| polynucleotide adenylyltransferase [Pseudomonas putida] Length = 463 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R +K+ Sbjct: 46 VNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 105 Query: 71 IPTSISYGTIKIICRKKYFDIT----TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I++ + + RS GR + + D+ RRDFTINA Sbjct: 106 VHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQRRDFTINA 165 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 166 LYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAA 215 >gi|239814474|ref|YP_002943384.1| poly(A) polymerase [Variovorax paradoxus S110] gi|239801051|gb|ACS18118.1| poly(A) polymerase [Variovorax paradoxus S110] Length = 546 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 125/260 (48%), Gaps = 35/260 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D N+++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F + Sbjct: 42 DERARNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFIIGR 101 Query: 67 RYKVIPTSISYG------TIKIICRKKYFD-----------------ITTLRSDLITDGR 103 R++++ + YG I++ + Y D + +++ + GR Sbjct: 102 RFRIV--HVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNERTSKGELASMKHAVDASGR 159 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + + D+ RRDFT+NA+Y D + V+DY G+ D + T++ IGD R E Sbjct: 160 VLRDNVWGPQEEDAARRDFTVNAMYYDPANQVVVDYHNGIRDAQKLTLRMIGDPATRYRE 219 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A + A+ +++ K L + R++ E+ KLL+ + + Sbjct: 220 DPVRIIRAIRFSAKLAALGFKMEAKTAAPLVESSKLLADVPQSRLFDEMLKLLQTGHAIA 279 Query: 221 AIVHMYNGGIFKEIF--LDV 238 + + G+ K I+ LDV Sbjct: 280 TVEQLRKLGLAKGIYPLLDV 299 >gi|212637095|ref|YP_002313620.1| polyA polymerase [Shewanella piezotolerans WP3] gi|212558579|gb|ACJ31033.1| PolyA polymerase [Shewanella piezotolerans WP3] Length = 433 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 20/235 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L+K K+ +VGG VRD L+ + +D D+ T P+ + R+F R Sbjct: 16 NAIKVLYRLHKSGFKAYLVGGGVRDILLGMQPKDFDVVTNATPEEIKRLFRNCRL----V 71 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK------------ADSLRRD 121 + I+ + ++ TLR + G K+ T + D+ RRD Sbjct: 72 GRRFRLAHIVFGRDVIEVATLRGHHVDSGE--KISKTNESGRLLRDNVYGSIDEDAERRD 129 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL +RTI+ IGD R ED +R+LR R FA + Sbjct: 130 FTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVR-FATKLDM 188 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +I+S + LK + + R++ E+ KL A M + G+F +F Sbjct: 189 SIESAAADPIQELAPLLKDIPAARMYEEVLKLFFAGKAAQNYNMMRDFGLFAPLF 243 >gi|145297078|ref|YP_001139899.1| hypothetical protein cgR_2974 [Corynebacterium glutamicum R] gi|140846998|dbj|BAF55997.1| hypothetical protein [Corynebacterium glutamicum R] Length = 470 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 8/221 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+ + D+D T+ P+ I V T I++GT+ + + Sbjct: 31 LVGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTGIAFGTLSAEKHGQQIE 90 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQ--GKVI--DYVGGLND 144 ITT RSDL DG R +V F + D +RRDF +NA+ A+ Q G++ D VGGL D Sbjct: 91 ITTFRSDLY-DGNSRNPEVTFGDTLEGDLIRRDFKVNAMAAEIQADGELTFHDPVGGLED 149 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L T+ +D LR+LR RF + + + A + + + ++ ER Sbjct: 150 LLTHTLDTPATPEQSFNDDPLRMLRAARFVSQLN-FTLAPRVITAMTEMAQQITRITVER 208 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + E++K++ KNP I M GI + ++ ++ + + Q Sbjct: 209 MQVELDKMILGKNPEAGIDLMVESGIAQIVYPEIPAMQMTQ 249 >gi|153003178|ref|YP_001377503.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5] gi|152026751|gb|ABS24519.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5] Length = 548 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 101/213 (47%), Gaps = 16/213 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D+D + +++ L ++ VGG VRD L+ +D D+AT P V IF R Sbjct: 52 DADAVRVIARLRHMRHRAYFVGGCVRDLLLGAKPKDFDVATDAHPGEVRAIFRNCRL--- 108 Query: 72 PTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAK----VVFTRD-----WKADSLRRD 121 + + R K ++ T R + + G ++ TRD + D++RRD Sbjct: 109 -IGRRFRLAHVYFRGGKVIEVATFRKNPVDVGEDVPDTDDLLITRDNVFGTAEEDAVRRD 167 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+N L+ D G+VIDYVGG DL R I IGD R+ ED +R+LR RF A G Sbjct: 168 FTVNGLFYDVATGEVIDYVGGREDLEARRIATIGDPEIRMREDPVRLLRAVRFAARLG-F 226 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 I D A + L + R+ EI K+L Sbjct: 227 IIAPDTFEAMRRHASELARCAPARVLEEIFKIL 259 >gi|300934368|ref|ZP_07149624.1| tRNA nucleotidyltransferase [Corynebacterium resistens DSM 45100] Length = 504 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 22/261 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P +++ + K+ T I YGT+ + R + Sbjct: 55 LVGGSVRDALLGRLSHDLDFTTDARPAQIIEVLEPLAEKIWDTGIEYGTVSALVRGAMLE 114 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 ITT R+D D R V F + D +RRDF +NA L D + D +GGL+D Sbjct: 115 ITTFRADQYDGDSRNPDVTFGDSLEGDLIRRDFRVNAMALELRPDGDHQFQDPLGGLDDA 174 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + +D LR+LR RF + E + A + +K ++ ER+ Sbjct: 175 AAGLLDTPDSPEISFNDDPLRMLRACRFVSQL-EFAVAPRVGAAMKEMAPQIKRITVERV 233 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----------------LSQV 249 E+NKL+ P + + M + G+ + + ++ + + Q L Sbjct: 234 AVELNKLMLGAAPWDGLDLMVDSGLAEFVLPELPALKMTQDEHKQHKDVYRHSLRVLRNA 293 Query: 250 IEAEQVFEWKIDSLLRFIVLI 270 +E E W+ D LR L+ Sbjct: 294 VELEAKNNWEPDLELRMASLL 314 >gi|302552677|ref|ZP_07305019.1| tRNA adenylyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302470295|gb|EFL33388.1| tRNA adenylyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 481 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 11/222 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P V++I V I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVWEVGIAFGTVGAHKGGYQI 104 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + ID GGL DL + Sbjct: 105 EVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKEFIDPHGGLEDLAS 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKAKKG-LKILSSE 203 R ++ G +D LR++R RF A +D + +VA+++ G ++I+S+E Sbjct: 165 RVLRTPGTPEESFSDDPLRMMRAARFAA-----QLDFEVAPEVVAAMEGMAGRIEIVSAE 219 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 R+ E+NKL+ + +P + + G+ + ++ + L++ Sbjct: 220 RVRDELNKLILSPHPRKGLTLLVETGLADRVLPELPALRLER 261 >gi|291613415|ref|YP_003523572.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1] gi|291583527|gb|ADE11185.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 9/201 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTSISYGTIKI 82 K+ +VGGAVRD L++ +D D+AT P+ V R+F + R++++ T+++ Sbjct: 54 KAFVVGGAVRDLLLDRQPKDFDVATDATPEEVKRVFRRARIIGRRFRLVHVMFGEETVEV 113 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGG 141 ++ D +D GR + D + D+ RRDFT N L+ D + I DY G Sbjct: 114 STFRRAIDAEDAETD--EHGRILRDNEFGDQEQDAARRDFTANGLFYDPATQEIFDYHHG 171 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 D+R T++ IGD R ED +R+LR R A G K +D K K+ L + Sbjct: 172 YEDIRANTLRMIGDPEVRYREDPVRMLRAVRLSAKLGMK-LDPATAAPISKMKELLSNVP 230 Query: 202 SERIWSEINKLLEAKNPLNAI 222 R++ E+ KLL + L I Sbjct: 231 EARLFDEMLKLLLSGQALPCI 251 >gi|237802072|ref|ZP_04590533.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024928|gb|EGI04984.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 467 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 34/220 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K+ Sbjct: 44 VNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 103 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKAD 116 + I +G ++ ++ T R++ D GR + + D Sbjct: 104 V--HIHFG-------REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEED 154 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +V+DY G++D+RN+ I+ IGD R ED +R+LR RF A Sbjct: 155 AQRRDFTINALYYDPVSERVLDYANGVHDIRNKLIRLIGDPEQRYKEDPVRMLRAVRFAA 214 Query: 176 H--YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +G + + + A L+ + S R++ E+ KL Sbjct: 215 KLDFGIEKHSAQPISALAPM---LRDIPSARLFEEVLKLF 251 >gi|26991381|ref|NP_746806.1| poly(A) polymerase [Pseudomonas putida KT2440] gi|24986448|gb|AAN70270.1|AE016667_3 poly(A) polymerase [Pseudomonas putida KT2440] Length = 460 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDIT----TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I++ + + RS GR + + D+ RRDFTINA Sbjct: 103 VHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQRRDFTINA 162 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 163 LYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAA 212 >gi|320009733|gb|ADW04583.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces flavogriseus ATCC 33331] Length = 481 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 22/259 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVGIAFGTVGSQKDGYQI 104 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + ID GGL+DL Sbjct: 105 EVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVALPHKEFIDPHGGLDDLAQ 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ G +D LR+LR RF A + + D + A ++I+S+ERI Sbjct: 165 RVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPDVVKAMTDMAGRIEIVSAERIRE 223 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVIE 251 E+NKLL + +P + + + G+ + DV E SL L Q I+ Sbjct: 224 ELNKLLLSGHPRKGLGLLVDTGLAGHVLPELPALRLESDEHHRHKDVYEHSLTVLEQAID 283 Query: 252 AEQVFEWKIDSLLRFIVLI 270 E E D +LR L+ Sbjct: 284 LE---EDGPDLVLRLAALL 299 >gi|29830842|ref|NP_825476.1| RNA nucleotidyltransferase [Streptomyces avermitilis MA-4680] gi|29607955|dbj|BAC72011.1| putative RNA nucleotidyltransferase [Streptomyces avermitilis MA-4680] Length = 480 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 3/218 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I + I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAMWEVGIAFGTVGAQKEGYQI 104 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + ID GGL+DL Sbjct: 105 EVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKEFIDPHGGLDDLAA 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ G +D LR++R RF A + + D + A + + I+S+ER+ Sbjct: 165 RILRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAPDVVTAMTEMAGRIDIVSAERVRD 223 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 E+NKL+ + +P + + + G+ + ++ + L++ Sbjct: 224 ELNKLVLSAHPRKGLTLLVDTGLADHVLPELPALRLER 261 >gi|312963066|ref|ZP_07777551.1| poly(A) polymerase [Pseudomonas fluorescens WH6] gi|311282577|gb|EFQ61173.1| poly(A) polymerase [Pseudomonas fluorescens WH6] Length = 467 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 20/213 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFTIN 125 + I++ + D R RD + D+ RRDFTIN Sbjct: 103 VHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGRILRDNVYGTLEEDAQRRDFTIN 162 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYG-EKN 181 ALY D +++DY G++D+RN I+ IGD R ED +R+LR RF A ++G EK+ Sbjct: 163 ALYYDPVSERILDYANGVHDIRNNLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKH 222 Query: 182 IDSDGLVASIKA-KKGLKILSSERIWSEINKLL 213 A I+ L+ + S R++ E+ KL Sbjct: 223 T-----AAPIRELAPMLREIPSARLFEEVLKLF 250 >gi|182437476|ref|YP_001825195.1| putative RNA nucleotidyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465992|dbj|BAG20512.1| putative RNA nucleotidyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 480 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 22/259 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVWEVGIAFGTVGSQKDGYQI 104 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + +D GGL DL + Sbjct: 105 EVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVALPEKEFVDPYGGLKDLAD 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ G +D LR+LR RF A + + + + A + + I+S+ER+ Sbjct: 165 RVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPEVVTAMTEMAARIDIVSAERVRD 223 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVIE 251 E+NKLL +++P + + + G+ + DV E SL L Q I+ Sbjct: 224 ELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHHRHKDVYEHSLTVLEQAID 283 Query: 252 AEQVFEWKIDSLLRFIVLI 270 E E D +LR L+ Sbjct: 284 LE---EDGPDLVLRLAALL 299 >gi|295099606|emb|CBK88695.1| tRNA nucleotidyltransferase/poly(A) polymerase [Eubacterium cylindroides T2-87] Length = 436 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 22/244 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ + ++ ++ +VGG VRD L+ D DIAT LP+ +++F VI T + + Sbjct: 10 IIEIYHRAGYEAFVVGGCVRDYLLGKEPHDYDIATNALPEVTIQLFDH----VILTGLKH 65 Query: 78 GTIKIICRKKYFDITTLR-SDLITDGRYAKVV-FTRDWKADSLRRDFTINAL-YADQQGK 134 GT+ I+ + ++TT R D R+ + V F + D RRDFTINA+ Y D +G Sbjct: 66 GTVTILSNEP-VEVTTFRLESEYKDHRHPETVRFVNTIEEDLSRRDFTINAMAYNDIRG- 123 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID G DL R I+ + D R ED LR+LR RF A + I+ +A K Sbjct: 124 LIDPFHGQIDLEKRKIRCVNDPDTRFKEDALRMLRAHRFAAKLNFE-IEEHTKLAIEKNS 182 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L+ +S ERI E+ +++ +P Y E+ +D+ L QL Q E EQ Sbjct: 183 SLLRYISIERIRLELVEIMRY-DP-------YELENMTELLIDI----LPQLKQCKECEQ 230 Query: 255 VFEW 258 W Sbjct: 231 NSPW 234 >gi|196230079|ref|ZP_03128942.1| tRNA adenylyltransferase [Chthoniobacter flavus Ellin428] gi|196225676|gb|EDY20183.1| tRNA adenylyltransferase [Chthoniobacter flavus Ellin428] Length = 447 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 109/413 (26%), Positives = 181/413 (43%), Gaps = 46/413 (11%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 GG VRD LM + D DIAT P++V +F +T I +G I ++ F + Sbjct: 28 AGGCVRDQLMGVEPHDYDIATNAHPEQVQNLFRRT----IAVGAHFGVIIVLQDDFEFQV 83 Query: 92 TTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRT 149 T R+D DGR + V + D+ RRDFTIN L+ D GK+IDYVGG DL + Sbjct: 84 ATFRNDGQYIDGRRPESVSFATPEEDATRRDFTINGLFFDPIAGKLIDYVGGQQDLAKKM 143 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV--ASIKAKKGLKILSSERIWS 207 ++ IG+ + R+ ED LR+LR RF A D DG A + + + +S+ERI Sbjct: 144 LRAIGNPYDRLREDRLRLLRAVRFGATL---CFDLDGATWRAVCENARHIHEVSAERIRE 200 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVF---------- 256 E+ K+ + + + G+ + +++ + +Q Q VF Sbjct: 201 ELVKIFLSPKRVRGFDLLDESGLMAAVLPEIEALKGCEQPPQFHPEGDVFVHTRIMLGLL 260 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAK----KFS----LPREIRYFLISFFNCNFNQKTL 308 ++ L VL K ++ +FS L E+ L+S + + Sbjct: 261 PTQVSVPLVLSVLFHDIGKPGTYAVDPDGRIRFSGHDKLGAEMTEALMSRLRFSRAEIDA 320 Query: 309 SIPEIKK-LFYLYGDKVMIAKLKIFLALHY--NNLT-HQDTCFILQVLSDIIHWKK---- 360 ++ + + + ++ +AKLK FLA + + L H+ C + D + K Sbjct: 321 TVEAVANHMVFKDVQQMRVAKLKRFLARPHMEDELELHRVDCTSSHGMLDNYEYLKAKRE 380 Query: 361 -----PLFP---LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 PL P +TG +++ G+ PG + IL + + + + S+E L Sbjct: 381 EFANEPLIPPPLITGRELIALGLKPGPRFAEILEAVQSRQLEGTLKTSEEALE 433 >gi|74318068|ref|YP_315808.1| poly(A) polymerase, PcnB [Thiobacillus denitrificans ATCC 25259] gi|74057563|gb|AAZ98003.1| poly(A) polymerase, PcnB [Thiobacillus denitrificans ATCC 25259] Length = 462 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 110/242 (45%), Gaps = 28/242 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + L + K +VGGAVRD L+ + +D D+AT P+ V R+F ++R Sbjct: 37 DDCALKVCETLAQAGFKGYLVGGAVRDLLLGGTPKDFDVATDATPEEVRRLFRRSRI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRS-------DLITDGRYAKVVFTR------------- 111 + + ++C ++ ++TT R+ D G A R Sbjct: 94 -IGRRFQIVHVMCGRETIEVTTFRANGQKEAEDEDAHGDDAPAASRRLTDEHGRLLSDNV 152 Query: 112 --DWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 D+ RRDFTINALY D + +V DY GG+ D + R ++ IGD R ED +R+L Sbjct: 153 FGSMADDAARRDFTINALYYDPAREEVHDYFGGVGDCKKRVLRMIGDPETRYREDPVRML 212 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +ID + L + RI+ E KLL + + L + + Sbjct: 213 RAARFAAKL-DFHIDPETRKPVATLAPLLANIPRARIFDEALKLLLSGHALRGVHQLRAE 271 Query: 229 GI 230 G+ Sbjct: 272 GL 273 >gi|148653930|ref|YP_001281023.1| poly(A) polymerase [Psychrobacter sp. PRwf-1] gi|148573014|gb|ABQ95073.1| poly(A) polymerase [Psychrobacter sp. PRwf-1] Length = 719 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I +++ LNKG + IVGG VRD+L+ LS +D D T P V +F K R ++I Sbjct: 20 IIEVIATLNKGGFDAYIVGGGVRDTLLGLSPKDFDAVTDARPHEVKDLFGK-RCRII--G 76 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRY-AKVVFTRD--W---KADSLRRDFTINALY 128 + + + ++ T R+ D + + RD W + D RRDF+INA+Y Sbjct: 77 RRFQLAHVYSGRDMIEVATFRAPPTGDAHATSDGMIVRDNVWGDIEQDFARRDFSINAMY 136 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G V D+ L+D++N+T++ +G A RI ED +R+LR RF A G Sbjct: 137 YQPLKGVVHDFCNALDDIKNKTLRLLGHAPLRIEEDPVRLLRALRFKAKLG 187 >gi|161504691|ref|YP_001571803.1| poly(A) polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866038|gb|ABX22661.1| hypothetical protein SARI_02813 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 472 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 169 DFTINSLYYSVAD--FTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 226 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I S+ + L + R++ E KLL+A N + +F+ +F Sbjct: 227 NMR-ISSETAEPIPRLAALLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLF 283 >gi|45359345|gb|AAS58928.1| polyA polymerase [Rickettsia mongolotimonae] Length = 115 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 4/116 (3%) Query: 119 RRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINAL Y + ++ DY G DL+ + FIG+A RI EDYLRILRFFRF ++Y Sbjct: 1 RRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYY 60 Query: 178 GEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 N DG + KA K GLK LS ERI SE++K++ +K + M+ GI + Sbjct: 61 A--NQLDDGSFKACKALKDGLKTLSRERIKSEMDKIIVSKRAAQILKAMFEIGILE 114 >gi|148549764|ref|YP_001269866.1| poly(A) polymerase [Pseudomonas putida F1] gi|148513822|gb|ABQ80682.1| poly(A) polymerase [Pseudomonas putida F1] Length = 460 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDIT----TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I++ + + RS GR + + D+ RRDFTINA Sbjct: 103 VHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQRRDFTINA 162 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 163 LYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAA 212 >gi|70732584|ref|YP_262347.1| poly(A) polymerase [Pseudomonas fluorescens Pf-5] gi|68346883|gb|AAY94489.1| poly(A) polymerase [Pseudomonas fluorescens Pf-5] Length = 555 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 24/215 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R +K+ Sbjct: 135 VNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVKAEFRNARIIGRRFKL 194 Query: 71 IPTSISYG-------TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I +G T + + D + +S GR + + D+ RRDFT Sbjct: 195 V--HIHFGREIIEVATFRANHPQNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFT 252 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYG-E 179 INALY D +++DY G++D+RN I+ IGD R ED +R+LR RF A ++G E Sbjct: 253 INALYYDPVSERILDYANGVHDIRNNLIRLIGDPRQRYQEDPVRMLRAVRFAAKLNFGIE 312 Query: 180 KNIDSDGLVASIKA-KKGLKILSSERIWSEINKLL 213 K+ A I+ L+ + S R++ E+ KL Sbjct: 313 KHT-----AAPIRELAPMLREIPSARLFEEVLKLF 342 >gi|167035687|ref|YP_001670918.1| poly(A) polymerase [Pseudomonas putida GB-1] gi|166862175|gb|ABZ00583.1| poly(A) polymerase [Pseudomonas putida GB-1] Length = 462 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDIT----TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I++ + + RS GR + + D+ RRDFTINA Sbjct: 103 VHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQRRDFTINA 162 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 163 LYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAA 212 >gi|219668423|ref|YP_002458858.1| polynucleotide adenylyltransferase region [Desulfitobacterium hafniense DCB-2] gi|219538683|gb|ACL20422.1| Polynucleotide adenylyltransferase region [Desulfitobacterium hafniense DCB-2] Length = 529 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 17/193 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRD L+N +D+D I + + + + Y + + T+ + + + D Sbjct: 20 IVGGTVRDHLLNRPGKDVDGIIPIPLEELEKHLREWGYHPLKIGAKHQTLSVFQQGQRMD 79 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRT 149 I DL +AD+LRRDFTINA++ D + G++ID + G DL N+ Sbjct: 80 INFFDGDL---------------EADALRRDFTINAVFQDARTGELIDPLQGREDLENKL 124 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ G+ R ED +RILR RF YG +I+ D ++ LK ++SER E+ Sbjct: 125 LRACGNPWERFREDPVRILRMVRFSVQYG-MDIEEDTFRSAQSLLPELKHVASERTSEEL 183 Query: 210 NKLLEAKNPLNAI 222 ++L +P I Sbjct: 184 GRILTLADPAAGI 196 >gi|254491967|ref|ZP_05105145.1| poly(A) polymerase subfamily [Methylophaga thiooxidans DMS010] gi|224462782|gb|EEF79053.1| poly(A) polymerase subfamily [Methylophaga thiooxydans DMS010] Length = 456 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 30/238 (12%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N+L L ++ +VGG VRD L+ +D D++T LP++V ++F ++R Sbjct: 44 NALNVLYTLKDAGFEAYLVGGCVRDLLLGHEPKDFDVSTNALPEQVHKLFRRSRL----I 99 Query: 74 SISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + + ++ ++ T R+ D+ GR + + D+ RRDFT+NAL Sbjct: 100 GRRFKLVHVRFGREVIEVATFRAPPGANGDVDAQGRIVQDNVYGTLEQDAWRRDFTVNAL 159 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y + + +IDY GG+ DL I+ IGD R ED +R+LR RF A G Sbjct: 160 YYNIRDFSIIDYTGGIEDLNAGVIRLIGDVETRYREDPVRMLRALRFVAKL--------G 211 Query: 187 LVASIKAKKG-------LKILSSERIWSEINKLLEAKNPLNAIVH--MYNGGIFKEIF 235 L K ++G LK + R++ E KL + N A+ H + + G+F ++ Sbjct: 212 LQVDAKTEQGIFNWGSLLKDIPPARLFDETLKLYLSGN--AAVTHELLCHYGLFDHMY 267 >gi|183985441|ref|YP_001853732.1| poly(a) polymerase PcnA [Mycobacterium marinum M] gi|183178767|gb|ACC43877.1| poly(a) polymerase PcnA [Mycobacterium marinum M] Length = 481 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 17/230 (7%) Query: 31 IVGGAVRDSLMN-LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ L D+D T P +V +I V T I +GTI I Sbjct: 41 LVGGSVRDALLGRLKSPDLDFTTDARPQQVQKIVRSWADAVWDTGIEFGTIGIAKNDYRL 100 Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 +ITT R+D R+ +V F + D +RRDFT+NA+ A G+ +D +GGL+ Sbjct: 101 EITTFRADSYDQVSRHPEVRFGERLEDDLVRRDFTVNAMAVRITASGPGEFLDPLGGLSV 160 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKIL 200 LR++ + +D LR+LR RF + G + D+ +A A+ + Sbjct: 161 LRDKVLDTPAAPSVSFGDDPLRMLRAARFVSQLGFAVAPRVRDAIEEMAPQLAR-----I 215 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 S+ER+ +E++KLL +NP+ I M + G+ + + ++ ++++D+ Q Sbjct: 216 SAERVAAELDKLLLGENPVAGIDLMVHTGMGEVVLPEIGGMQMAIDEHHQ 265 >gi|261868441|ref|YP_003256363.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413773|gb|ACX83144.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 434 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 26/200 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL VQD D + P+ +++ K P + T +++Y Sbjct: 10 LVGGAVRDQLLNLPVQDRDWVIVGATPEALLQQGYHQVGKDFPVFLHPQT-----KEEY- 63 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y + F+ D + D +RRD TINA+ D QG + D GG DL Sbjct: 64 --ALARTERKSGAGYTGFICDFSPDINLEQDLIRRDLTINAMAQDLQGNLFDPYGGAQDL 121 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-------GEKNIDSDGLVASIKAKKGLK 198 NR ++ + A +ED LR+LR RF A Y E+ + L+ + A+ L+ Sbjct: 122 ANRVLRHVSPA---FVEDPLRVLRVARFAARYHYLGFKIAEETLQ---LMKDLTAQGELQ 175 Query: 199 ILSSERIWSEINKLLEAKNP 218 L++ER+W+E K L KNP Sbjct: 176 HLTAERVWAETEKALNEKNP 195 >gi|76154248|gb|AAX25739.2| SJCHGC09232 protein [Schistosoma japonicum] Length = 217 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 11/118 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTIKI-ICRKKY 88 I GGAVRD L+ +S DID AT P ++ +FSK +++ S+GT+ I K+ Sbjct: 80 IAGGAVRDILLGVSPHDIDFATDATPSQMCEMFSKEGIRMLNRNGESHGTVTARINDKEN 139 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA---------LYADQQGKVID 137 F++TTLR D++TDGR+++V+FT DWK D+ RRD T+N+ L+ D GK I+ Sbjct: 140 FEVTTLRIDVVTDGRHSEVIFTNDWKLDAERRDLTVNSMFLSVDMHELFDDVNGKTIE 197 >gi|94266549|ref|ZP_01290235.1| Poly(A) polymerase, PcnB [delta proteobacterium MLMS-1] gi|93452824|gb|EAT03350.1| Poly(A) polymerase, PcnB [delta proteobacterium MLMS-1] Length = 460 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 25/238 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 D + + +L L + +VGG VRD L+ S +D DI+T+ P + +IF +R Sbjct: 26 DREALKVLHRLRDEGHTAYLVGGGVRDLLLGKSPKDFDISTSAKPGELRKIFRNSRIIGR 85 Query: 68 -YKVIPTSISYGTIKII----CRKKY----FDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++++ G I + CR ++ ++ TL D T G A+ D+ Sbjct: 86 RFRLVQVFFPGGKIIEVSTFRCRSEFELDGSEVETLAQD-NTFGNPAE---------DAF 135 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRD TINAL+ + + VIDY GG+ DLRNR ++ +GD R+L D +R+LR R A Sbjct: 136 RRDLTINALFYEIETFTVIDYTGGVEDLRNRLVRLVGDPDRRLLRDPVRMLRAIRHAARA 195 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I+ A + L + R+ E+ K L A + GIF E+F Sbjct: 196 G-FAIEEQTWAAICRHVDKLALCPDSRLRDELFKDLRAGASRHWAELALTSGIFFELF 252 >gi|323357972|ref|YP_004224368.1| tRNA nucleotidyltransferase/poly(A) polymerase [Microbacterium testaceum StLB037] gi|323274343|dbj|BAJ74488.1| tRNA nucleotidyltransferase/poly(A) polymerase [Microbacterium testaceum StLB037] Length = 479 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 5/218 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGG VRD+L+ D D T PD ++ + +GTI + Sbjct: 35 AIVGGPVRDALLGRLTHDFDFTTDARPDEILALVKPVSSVQWDVGRDFGTIGARVHGEQV 94 Query: 90 DITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLR 146 +ITT R+D DG R V F +AD RRDFT+NA+ + ++D GG+ DL Sbjct: 95 EITTYRADSY-DGVTRKPTVEFGDTLEADLTRRDFTVNAMALRVPARTLVDPTGGVEDLI 153 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 ++ D +D LR+LR RF + E +ID D L A + ++ L+I+S ER+ Sbjct: 154 AGRLRTPIDPAVSFGDDPLRMLRGARFASQL-EFDIDPDTLDAIAELRQTLQIVSPERVQ 212 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 SE+ +LL+ +P+ I + + E +V + L+ Sbjct: 213 SELVRLLQTDDPVRGIRVLVETRLIDEFLPEVPALRLE 250 >gi|124268204|ref|YP_001022208.1| putative polynucleotide adenylyltransferase protein [Methylibium petroleiphilum PM1] gi|124260979|gb|ABM95973.1| putative polynucleotide adenylyltransferase protein [Methylibium petroleiphilum PM1] Length = 535 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 34/250 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D + +++ L++ ++ IVGGAVRD ++ L +D D+AT P++V +F + Sbjct: 48 DDRALKVVATLHEAGYEAYIVGGAVRDMMLGLRPKDFDVATNATPEQVKGLFRRAFIIGR 107 Query: 67 RYKVIPTSISYG------TIKIICRKKYFDIT----------TLRSDL-----ITDGRYA 105 R++++ + YG I++ + Y D T +++L + D Sbjct: 108 RFRIV--HVVYGRGREHEVIEVSTFRAYLDAAAAEQVAGNEKTSKAELSGKSHVVDA-SG 164 Query: 106 KVVFTRDWKA---DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 +V+ W D+ RRDFT+NALY D Q + V+DY GG+ D + R ++ IGD R Sbjct: 165 RVLRDNVWGPQHEDAARRDFTVNALYYDPQTQIVVDYHGGIADAKKRLLRMIGDPVTRYR 224 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +RI+R RF A G + I+ L+ + R++ E+ KLL+ + L + Sbjct: 225 EDPVRIIRVVRFAAKLGFE-IEPKTRAPMRDCAALLEAVPISRLFDEMIKLLQTGHALAS 283 Query: 222 IVHMYNGGIF 231 I + G+ Sbjct: 284 IAQLRKQGLL 293 >gi|192359588|ref|YP_001980912.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107] gi|190685753|gb|ACE83431.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107] Length = 457 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 17/174 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + I+ L++ ++ +VGG VRD L+ +D D+AT P+ V R+F R +++ Sbjct: 49 LKIIKQLHEAGFEAYLVGGGVRDLLLGGHPKDFDVATNAKPEEVRRLFRGARIVGRRFQI 108 Query: 71 IPTSISYGTIKIICRKKYFD--ITTLRSD---LITDGRYAKVVFTRDWKADSLRRDFTIN 125 + I I++ + + D + R++ L+ D Y + + D++RRDF++N Sbjct: 109 VHVRIGREMIEVTTFRGHHDEDLNHTRNEDGMLLRDNVYGTL------ETDAMRRDFSVN 162 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 ALY D + +IDY GG+ DL+ RT++ IG+ R ED +RILR RF A G Sbjct: 163 ALYYDLKTFSIIDYCGGMEDLKKRTLRIIGEPVTRYKEDPVRILRALRFAAKLG 216 >gi|104783677|ref|YP_610175.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48] gi|95112664|emb|CAK17392.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48] Length = 464 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + I+ L ++ +VGG VRD L+ ++ +D D+AT+ P++V F R +K+ Sbjct: 43 VGIVERLQAAGYQAYLVGGCVRDLLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIIC-RKKYFD---ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I++ R + D + RS GR + + D+ RRDFTINA Sbjct: 103 VHVHFGREIIEVATFRAPHSDEDQADSHRSSHNASGRILRDNVYGTLEEDAQRRDFTINA 162 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 163 LYYDPVSERILDYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAA 212 >gi|94271989|ref|ZP_01292045.1| Poly(A) polymerase, PcnB [delta proteobacterium MLMS-1] gi|93450282|gb|EAT01541.1| Poly(A) polymerase, PcnB [delta proteobacterium MLMS-1] Length = 460 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 25/238 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 D + + +L L + +VGG VRD L+ S +D DI+T+ P + +IF +R Sbjct: 26 DREALKVLHRLRDEGHTAYLVGGGVRDLLLGKSPKDFDISTSAKPGELRKIFRNSRIIGR 85 Query: 68 -YKVIPTSISYGTIKII----CRKKY----FDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++++ G I + CR ++ ++ TL D T G A+ D+ Sbjct: 86 RFRLVQVFFPGGKIIEVSTFRCRSEFELDGSEVETLAQD-NTFGNPAE---------DAF 135 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRD TINAL+ + + VIDY GG+ DLRNR ++ +GD R+L D +R+LR R A Sbjct: 136 RRDLTINALFYEIETFTVIDYTGGVEDLRNRLVRLVGDPDRRLLRDPVRMLRAIRHAARA 195 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I+ A + L + R+ E+ K L A + GIF E+F Sbjct: 196 G-FAIEEQTWAAICRHVDKLALCPDSRLRDELFKDLRAGASRHWAELALTSGIFFELF 252 >gi|296104714|ref|YP_003614860.1| tRNA nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059173|gb|ADF63911.1| tRNA nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 413 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 18/219 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P+ ++ + + P + + R+ Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPEEMLNAGYQQVGRDFPVFLHPQS-----RE 56 Query: 87 KYFDITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R S YA T + D LRRD TINAL D+ G+++D GG + Sbjct: 57 EYALARTERKSGSGYTGFTCYAAPDVT--LEQDLLRRDLTINALAQDENGQIVDAYGGQD 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DLRNR ++ + A ED LR+LR RF A Y + ++ L+ ++ L+ Sbjct: 115 DLRNRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETMALMTAMTKAGELEH 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L+ ER+W E L +NP + + G K +F ++ Sbjct: 172 LTPERVWKETENALTTRNPQVFFQVLRDCGALKVLFPEI 210 >gi|220934061|ref|YP_002512960.1| Polynucleotide adenylyltransferase [Thioalkalivibrio sp. HL-EbGR7] gi|219995371|gb|ACL71973.1| Polynucleotide adenylyltransferase [Thioalkalivibrio sp. HL-EbGR7] Length = 465 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 14/238 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + +L L + ++C+VGG VRD L+ +D D+AT P++V ++F R+++ Sbjct: 42 LKVLYRLREAGFRACLVGGGVRDLLLGREPKDFDVATDAHPEQVRQLFRNCRLIGRRFRL 101 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-------LITDGRYAKVVFTRDWKADSLRRDFT 123 I++ + ++ D L+ DGR + + D+ RRDFT Sbjct: 102 AHVQFGREIIEVATFRAPHEVLNGDDDEEFNGDALVEDGRIIRDNVYGTIEQDAWRRDFT 161 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INALY D + V+DY GG+ DL+ ++ IGD R ED +R+LR RF G + + Sbjct: 162 INALYYDIEDFSVVDYAGGMADLKAGVLRLIGDPEVRFREDPVRMLRAVRFAGKLGFR-L 220 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D A + L+ ++ R++ E KL + L + +F+ +F +E Sbjct: 221 DIACEQAIPRMAGLLEEVAPARLFDEAIKLFHSGYGLQTFEMLRRHDLFRFLFPATEE 278 >gi|227872944|ref|ZP_03991244.1| possible tRNA adenylyltransferase [Oribacterium sinus F0268] gi|227841196|gb|EEJ51526.1| possible tRNA adenylyltransferase [Oribacterium sinus F0268] Length = 191 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 22/180 (12%) Query: 8 KWFHDSDLI---------NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58 KW D I +I+ + + ++ VGG VRD+L+ +D DI T+ P+ Sbjct: 14 KWMKDPKAIQITVPKGVEHIIRQIEQAGYEAYAVGGCVRDALLGREPEDWDITTSAKPEV 73 Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRK-------KYFDITTLRSDLI-TDGRYAKVV-F 109 V +F +T I T I +GT+ ++ + F++TT R D I DGR+ K V F Sbjct: 74 VKSLFLRT----IDTGIEHGTVTVLLSPQEAGEGDRAFEVTTYRVDGIYEDGRHPKAVSF 129 Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 T + D RRDFTINA+ +ID G DL N+ ++ +G A R ED LR++R Sbjct: 130 TGSLEEDLARRDFTINAMAYHMDRGIIDCYHGQEDLENKRVRTVGRAEERFTEDALRMMR 189 >gi|184156907|ref|YP_001845246.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii ACICU] gi|183208501|gb|ACC55899.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii ACICU] Length = 487 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 124/234 (52%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + R +++ Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGR-RCRIV- 75 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 76 -GRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ ++D++++T++ +GD R ED +R+LR RF A K IDS Sbjct: 135 YYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFK-IDSAI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + ++ + L+ +S R++ E KL + + + + G++K++F D++ Sbjct: 194 LDIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIR 247 >gi|311112586|ref|YP_003983808.1| tRNA adenylyltransferase [Rothia dentocariosa ATCC 17931] gi|310944080|gb|ADP40374.1| tRNA adenylyltransferase [Rothia dentocariosa ATCC 17931] Length = 474 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 117/263 (44%), Gaps = 24/263 (9%) Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGG VRD L N + D D+ T P + RI S + YGTI Sbjct: 30 LVGGLVRDELRNAPGEFTDFDMTTNATPAQSERILSAWGEHIWDIGKEYGTISARKNGAV 89 Query: 89 FDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 +++TT R+++ + D R V F D KAD +RRDFTINA+ A G+++D G DL Sbjct: 90 YEVTTYRAEVYVADSRKPTVEFGTDLKADLIRRDFTINAMAAALPSGEIVDLFHGTKDLA 149 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 ++ ED LR++R RF A + + + A + ++I+S+ER+ Sbjct: 150 EGVLRTPRSPQESFSEDPLRMMRAARFAARFN-LTVAPEVFEAMQQMASRIEIISAERVR 208 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVI 250 E+ KL+ A P + + G+ + DV E SL + Q I Sbjct: 209 DELIKLICADYPRVGLNLLVETGLADYVLPELPALRMEMDPSHHHKDVYEHSLKVMEQAI 268 Query: 251 EAEQVFEWKI---DSLLRFIVLI 270 E E + D +LRF L+ Sbjct: 269 EKETAADGPCPAPDFVLRFASLL 291 >gi|125973904|ref|YP_001037814.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC 27405] gi|281418067|ref|ZP_06249087.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum JW20] gi|125714129|gb|ABN52621.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC 27405] gi|281409469|gb|EFB39727.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum JW20] gi|316939893|gb|ADU73927.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum DSM 1313] Length = 442 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 13/215 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D+ I+ LN K+ IVGG +RD+++ D D+AT P+ V IF K ++ T Sbjct: 12 DVSYIIDTLNNRGFKAYIVGGCIRDAILGKVPADWDVATDAQPEDVKLIFDK----IVET 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I +GT+ + ++ITT R+ AK+ +D D RDFTINA+ + Sbjct: 68 GIKHGTVTAVINGCNYEITTFRA-----PSSAKIPTIKD---DLGLRDFTINAMAYHPEE 119 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID G+ D+ I+ +G R ED LR+LR R + G + ID L A + Sbjct: 120 GIIDPFLGMQDMEKSVIRAVGSPEDRFHEDPLRMLRAVRLSSTLGFE-IDRSVLSAIKEN 178 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 K ++ +S ERI E++K+L + P N +V G Sbjct: 179 CKLIEKVSPERIRDELSKILISDRPKNFLVLRETG 213 >gi|256005025|ref|ZP_05429996.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum DSM 2360] gi|255990993|gb|EEU01104.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum DSM 2360] Length = 451 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 13/215 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D+ I+ LN K+ IVGG +RD+++ D D+AT P+ V IF K ++ T Sbjct: 12 DVSYIIDTLNNRGFKAYIVGGCIRDAILGKVPADWDVATDAQPEDVKLIFDK----IVET 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I +GT+ + ++ITT R+ AK+ +D D RDFTINA+ + Sbjct: 68 GIKHGTVTAVINGCNYEITTFRA-----PSSAKIPTIKD---DLGLRDFTINAMAYHPEE 119 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID G+ D+ I+ +G R ED LR+LR R + G + ID L A + Sbjct: 120 GIIDPFLGMQDMEKSVIRAVGSPEDRFHEDPLRMLRAVRLSSTLGFE-IDRSVLSAIKEN 178 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 K ++ +S ERI E++K+L + P N +V G Sbjct: 179 CKLIEKVSPERIRDELSKILISDRPKNFLVLRETG 213 >gi|42524817|ref|NP_970197.1| poly(A) polymerase [Bdellovibrio bacteriovorus HD100] gi|39577027|emb|CAE78256.1| poly(A) polymerase [Bdellovibrio bacteriovorus HD100] Length = 409 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 21/250 (8%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H+ + DS + I+ L ++ +VGG VRD L+ + +D DIAT+ P++V Sbjct: 19 HEDWIDSYALRIVRNLQDAGFETYLVGGCVRDLLVGIHPKDFDIATSAHPNQVR------ 72 Query: 67 RYKVIPTSISYGT-IKIICRKK---YFDITTLRSDLIT-------DGRYAKVVFTRDWKA 115 K +P + G K++ K+ F++ T R ++ D + + Sbjct: 73 --KKVPNAYVIGRRFKLVLVKRGDQQFEVATFRRNVTQEELADQGDDSVEGDNYFGTVEE 130 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NA++ D Q K+IDY GG+ D+ NR ++ IGD R +ED +RILR R Sbjct: 131 DAVRRDFTCNAVFYDPGQHKLIDYCGGIQDIENRVLRMIGDPKARFIEDPIRILRAIR-L 189 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 +H +I++ A + LK R E K L K P A + +++ I ++I Sbjct: 190 SHKLHFSIETTMRAAIAECSSELKKSVLPRRREEWLKFLRLKEPHLAFMELFDLHILEQI 249 Query: 235 FLDVQEISLD 244 + + +D Sbjct: 250 LPGLHSVFVD 259 >gi|255326495|ref|ZP_05367577.1| tRNA adenylyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296535|gb|EET75870.1| tRNA adenylyltransferase [Rothia mucilaginosa ATCC 25296] Length = 474 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 9/194 (4%) Query: 31 IVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGG VRD+L++ D D+ T P++ +I YGTI Sbjct: 30 LVGGIVRDNLLDDGGHFTDFDLTTDATPEQSEQILRAWGEHTWDIGKEYGTISARKNGVV 89 Query: 89 FDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 +++TT R+++ ++D R V F D AD +RRDFTINA+ A G+V+D GG+ DLR Sbjct: 90 YEVTTYRAEVYVSDSRKPTVEFGTDLSADLVRRDFTINAMAAALPSGEVVDLFGGVEDLR 149 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKG-LKILSSER 204 ++ ED LR++R RF A + N++ + + +++ G ++I+S+ER Sbjct: 150 AGVLRTPRSPEESFSEDPLRMMRAARFAARF---NLEVAPEVFEAMREMAGRIEIISAER 206 Query: 205 IWSEINKLLEAKNP 218 + E+ KL+EA P Sbjct: 207 VRDELMKLIEADYP 220 >gi|19554274|ref|NP_602276.1| putative polynucleotide polymerase [Corynebacterium glutamicum ATCC 13032] gi|62391931|ref|YP_227333.1| polyA polymerase [Corynebacterium glutamicum ATCC 13032] gi|41223078|emb|CAF19023.1| POLYA POLYMERASE [Corynebacterium glutamicum ATCC 13032] Length = 494 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 8/221 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+ + D+D T+ P+ I V T I++GT+ + + Sbjct: 55 LVGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTGIAFGTLSAEKHGQQIE 114 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINAL----YADQQGKVIDYVGGLND 144 ITT RSDL DG R +V F + D +RRDF +NA+ AD + D VGGL D Sbjct: 115 ITTFRSDLY-DGNSRNPEVTFGDTLEGDLIRRDFKVNAMAVEIQADGELTFHDPVGGLED 173 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L T+ +D LR+LR RF + + + A + + + ++ ER Sbjct: 174 LLTHTLDTPATPEQSFNDDPLRMLRAARFVSQLN-FTLAPRVITAMTEMAQQITRITVER 232 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + E++K++ KNP I M GI + I+ ++ + + Q Sbjct: 233 MQVELDKMILGKNPEAGIDLMVESGIAQIIYPEIPAMQMTQ 273 >gi|41410430|ref|NP_963266.1| PcnA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399264|gb|AAS06882.1| PcnA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 480 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 8/225 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P++V +I + + T I +GT+ + + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPEQVQQILRRWADNLWDTGIEFGTVGVGKGDRRLE 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R +V F + D +RRDFT NA+ D G+ +D +GGL L Sbjct: 101 ITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTANAMAVRITPDGPGEFLDPLGGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R R + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 161 RQRVLDTPATPEESFGDDPLRMLRAARFVSQLG-FTVAPRVREAIERMAPQLARISAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 +E++KL+ +P+ I + + G+ + + ++ ++++D+ Q Sbjct: 220 AAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAIDEHHQ 264 >gi|289164882|ref|YP_003455020.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella longbeachae NSW150] gi|288858055|emb|CBJ11915.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella longbeachae NSW150] Length = 438 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 14/238 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S+ + +L+ L ++ IVGG+VRD L++ + +D D+AT P++V +F R Sbjct: 32 SNALKVLNRLIGAGFQAYIVGGSVRDLLLHKAPKDFDVATNATPNQVKSLFRNGRI---- 87 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYA---KVVFTRD-----WKADSLRRDFTI 124 + + I+ ++ ++ T RS + D + + RD D+ RRDFTI Sbjct: 88 IGRRFKLVHILFHREIIEVATFRSHVALDENQVTNERGMLVRDNAYGSLDEDAWRRDFTI 147 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 N+LY + +ID+ GG+ D+ R I+ IGD R ED +R+LR RF A K + Sbjct: 148 NSLYYNINDSSIIDFTGGVKDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNFK-LA 206 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ + + +S+ R++ E+ KL + N + G+F +F Q++ Sbjct: 207 AETAAPFPEISHLITHVSNSRLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFPQTQKL 264 >gi|293390381|ref|ZP_06634715.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950915|gb|EFE01034.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 425 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 26/200 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL VQD D + P+ +++ K P + T +++Y Sbjct: 10 LVGGAVRDQLLNLPVQDRDWVIVGATPEALLQQGYHQVGKDFPVFLHPQT-----KEEY- 63 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y + F+ D + D +RRD TINA+ D QG + D GG DL Sbjct: 64 --ALARTERKSGAGYTGFICDFSPDINLEQDLIRRDLTINAMAQDLQGNLFDPYGGAQDL 121 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-------GEKNIDSDGLVASIKAKKGLK 198 NR ++ + A +ED LR+LR RF A Y E+ + L+ + A+ L+ Sbjct: 122 ANRVLRHVSPA---FVEDPLRVLRVARFTARYHYLGFKIAEETLQ---LMKDLTAQGELQ 175 Query: 199 ILSSERIWSEINKLLEAKNP 218 L++ER+W+E K L KNP Sbjct: 176 HLTAERVWAETEKALNEKNP 195 >gi|269467943|gb|EEZ79678.1| tRNA nucleotidyltransferase/poly(A) polymerase [uncultured SUP05 cluster bacterium] Length = 379 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 20/234 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D + + ++ ++K + +VGG VRD L+ L +D D+AT P++V ++F ++ Sbjct: 16 DKNAVKVIDTIHKAGFEVYLVGGCVRDLLLGLRPKDFDVATNAKPEQVHKLFKRSRLIGR 75 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFT 123 R++++ S + + ++ T RS + + +V + + D +RRDF Sbjct: 76 RFRLVHVMFSA--------RNFIEVATFRSGKVQTAKSGVIVRDNCYGNIEDDVIRRDFN 127 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INALY D ++ +VIDYVGGL D+ N+ I IG+ R +D +R++R RF + K Sbjct: 128 INALYYDIKKHQVIDYVGGLIDISNKEIHMIGEPTLRFEQDPVRMIRAVRFQSKLSAK-- 185 Query: 183 DSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S + ASI + L +S R++ E KL + + G+ + +F Sbjct: 186 LSPEIHASILNQAHLLSHVSPARLYEECIKLFHNEYAFEVFESLEKYGLLQCLF 239 >gi|45359341|gb|AAS58926.1| polyA polymerase [Rickettsia africae] gi|45359343|gb|AAS58927.1| polyA polymerase [Rickettsia slovaca 13-B] Length = 115 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 4/116 (3%) Query: 119 RRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINAL Y + ++ DY G DL+ + FIG+A RI EDYLRILRFFRF ++Y Sbjct: 1 RRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYY 60 Query: 178 GEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 N DG + KA K GLK LS ERI SE++K++ +K + M+ GI + Sbjct: 61 A--NQLDDGNFKACKALKDGLKTLSRERIKSEMDKIIVSKRAAQILKAMFEIGILE 114 >gi|325276181|ref|ZP_08141985.1| poly(A) polymerase [Pseudomonas sp. TJI-51] gi|324098690|gb|EGB96732.1| poly(A) polymerase [Pseudomonas sp. TJI-51] Length = 462 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 10/170 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQAAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIIC-RKKYFD---ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I++ R + + + RS GR + + D+ RRDFTINA Sbjct: 103 VHVHFGREIIEVATFRAPHTEDDQNDSHRSSHNASGRILRDNVYGTLEEDAQRRDFTINA 162 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 163 LYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAA 212 >gi|62185370|ref|YP_220155.1| putative poly(A) polymerase [Chlamydophila abortus S26/3] gi|62148437|emb|CAH64205.1| putative poly(A) polymerase [Chlamydophila abortus S26/3] Length = 428 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 15/204 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 46 LSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFK----NCILVGK 101 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + +++T RS + + T+D W + D LRRDFTIN L+ D Sbjct: 102 RFRLAHIRFSNQIIEVSTFRSGSADED----CLITKDNLWGTAEEDVLRRDFTINGLFYD 157 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L A Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILAR-AHFTVDPKTLEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 + + L S R++ E+ K+L Sbjct: 217 LQECRYELIKSSQARVFEELIKML 240 >gi|45359339|gb|AAS58925.1| polyA polymerase [Rickettsia conorii] Length = 115 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/116 (47%), Positives = 71/116 (61%), Gaps = 4/116 (3%) Query: 119 RRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINAL Y + ++ DY G DL+ + FIG+A RI EDYLRILRFFRF +Y Sbjct: 1 RRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSCYY 60 Query: 178 GEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 N DG + KA K GLK LS ERI SE++K++ +K + M+ GI + Sbjct: 61 A--NQLDDGNFKACKALKDGLKTLSRERIKSEMDKIIVSKRAAQILKAMFEIGILE 114 >gi|254777641|ref|ZP_05219157.1| PcnA [Mycobacterium avium subsp. avium ATCC 25291] Length = 480 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 8/225 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P++V +I + + T I +GT+ + + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPEQVQQILRRWADNLWDTGIEFGTVGVGKGDRRLE 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R +V F + D +RRDFT NA+ D G+ +D +GGL L Sbjct: 101 ITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTANAMAVRITPDGPGEFLDPLGGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R R + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 161 RQRVLDTPATPEESFGDDPLRMLRAARFVSQLG-FTVAPRVREAIERMAPQLARISAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 +E++KL+ +P+ I + + G+ + + ++ ++++D+ Q Sbjct: 220 AAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAIDEHHQ 264 >gi|328914968|gb|AEB55801.1| poly(A) polymerase family protein [Chlamydophila psittaci 6BC] Length = 414 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 15/204 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 32 LSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFK----NCILVGK 87 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + +++T RS + + T+D W + D LRRDFTIN L+ D Sbjct: 88 RFRLAHIRFSNQIIEVSTFRSGSADED----CLITKDNLWGTAEEDVLRRDFTINGLFYD 143 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L A Sbjct: 144 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILAR-AHFTVDPKTLEA 202 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 + + L S R++ E+ K+L Sbjct: 203 LQECRYELIKSSQARVFEELIKML 226 >gi|301061040|ref|ZP_07201837.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2] gi|300444834|gb|EFK08802.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2] Length = 444 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 19/221 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ + D+DI T+ P+ + +F Y V ++G + + Sbjct: 16 ETYVVGGAVRDMLIGKAPADVDIVTSATPEEIEVLFEG--YPVKTVGKAFGVVLVAG--- 70 Query: 88 YFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLND 144 ++++T R D L D + +V F + D RRD TINA+ + DQ G +ID G D Sbjct: 71 -YEVSTFRQDRYLGLDDKACQVTFVEAIEEDLSRRDLTINAMAFCDQSGALIDPHNGRED 129 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK--GLKI--- 199 L+ R I+F+G+ RI ED RI+R RF A ID + KA K G + Sbjct: 130 LKKRRIRFVGNPMERIYEDPNRIVRACRFLA-----RIDGSFDPQTFKALKECGHYVRDH 184 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ +R+ EI K ++ + +++ G+ + IF +++ Sbjct: 185 VAPDRVRIEIMKAMKIRRASRFFYALHDIGVLQYIFPSMEK 225 >gi|330504808|ref|YP_004381677.1| poly(A) polymerase [Pseudomonas mendocina NK-01] gi|328919094|gb|AEB59925.1| poly(A) polymerase [Pseudomonas mendocina NK-01] Length = 462 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 12/209 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I+++ L K ++ +VGG VRD L+++ +D D+AT+ P++V F R +K+ Sbjct: 43 ISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATSATPEQVRAEFRNARVIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFTIN 125 + I++ + + R+ RD + D+ RRDFTIN Sbjct: 103 VHVHFGREIIEVATFRANHPQGEEEENSNQAARHESGRILRDNVYGTLEDDAQRRDFTIN 162 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D Q ++DY G++D+RN ++ IGD R LED +R+LR RF A + I+ Sbjct: 163 ALYYDPTQEHILDYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKL-DFEIEK 221 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLL 213 + L+ + S R++ E+ KL Sbjct: 222 HSAAPIRRLAPMLRDIPSARLFDEVLKLF 250 >gi|29840548|ref|NP_829654.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC] gi|29834898|gb|AAP05532.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC] Length = 428 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 15/204 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 46 LSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKN----CILVGK 101 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + +++T RS D Y + T+D W + D LRRDFTIN L+ D Sbjct: 102 RFRLAHIRFSNQIIEVSTFRSG-SADEDY---LITKDNLWGTAEEDVLRRDFTINGLFYD 157 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL+NR ++ IGD R +D +R+LR + A +D L A Sbjct: 158 PAEETIIDYTGGVSDLQNRYLRTIGDPFVRFKQDPVRMLRLLKILAR-ASFTVDPKTLEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 + + L + R++ E+ K+L Sbjct: 217 LQECRYELVKSAPARVFEELIKML 240 >gi|313500605|gb|ADR61971.1| PcnB [Pseudomonas putida BIRD-1] Length = 460 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDIT----TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I++ + + T RS GR + + D+ RRDFTINA Sbjct: 103 VHVHFGREIIEVATFRAHHSEDDQGDTHRSSHNASGRILRDNVYGTLEEDAQRRDFTINA 162 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LY D +++DY G++D+RNR ++ IGD R ED +R+LR RF A Sbjct: 163 LYYDPVSERILDYANGVHDVRNRLLRLIGDPTQRYQEDPVRMLRAVRFAA 212 >gi|257094033|ref|YP_003167674.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046557|gb|ACV35745.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 448 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 8/214 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPT 73 + L +G ++ +VGGAVRD L L +D D+AT P++V + F ++ R++++ Sbjct: 44 IETLQEGGYQAYVVGGAVRDLLAGLVPKDFDVATNATPEQVRQCFRRSRIIGRRFQIVHV 103 Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 ++ TI++ R + + ++ GR + D+ RRDFT+NALY D Sbjct: 104 NMGVETIEVTTFRGHHGEQGGNKAQTDDQGRVLRDNVFGSQAEDAARRDFTVNALYYDPT 163 Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY G+ DL+ +T++ IGD R ED +R+LR R A G ID + Sbjct: 164 AETIIDYHHGVADLKQKTLRMIGDPKTRYREDPVRMLRAVRLAAKLG-LMIDPEASRPIR 222 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 + ++ + R++ E+ KLL + + + + + Sbjct: 223 EMTDLIENVPPSRLFDEMLKLLTSGHAVRCVTRL 256 >gi|229592622|ref|YP_002874741.1| putative polynucleotide adenylyltransferase [Pseudomonas fluorescens SBW25] gi|229364488|emb|CAY52328.1| putative polynucleotide adenylyltransferase [Pseudomonas fluorescens SBW25] Length = 467 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 20/213 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFTIN 125 + I++ + D R RD + D+ RRDFTIN Sbjct: 103 VHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGRILRDNVYGTLEEDAQRRDFTIN 162 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYG-EKN 181 ALY D +++DY G++D+RN I+ IGD R ED +R+LR RF A ++G EK+ Sbjct: 163 ALYYDPVSERILDYANGVHDIRNNLIRLIGDPVQRYQEDPVRMLRAVRFAAKLNFGIEKH 222 Query: 182 IDSDGLVASIKA-KKGLKILSSERIWSEINKLL 213 A I+ L+ + S R++ E+ KL Sbjct: 223 T-----AAPIRELAPMLREIPSARLFEEVLKLF 250 >gi|152971977|ref|YP_001337086.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166233861|sp|A6TE35|CCA_KLEP7 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|150956826|gb|ABR78856.1| tRNA nucleotidyl transferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 413 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 14/197 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + R+ Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQS-----RE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G +AD LRRD T+NAL D G +ID GG NDL Sbjct: 57 EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQNDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R R ++ + A ED LR+LR RF A Y ++ L+A+I L L+ Sbjct: 117 RKRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAIVEAGELAHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E L +NP Sbjct: 174 PERVWKETESALTTRNP 190 >gi|300690555|ref|YP_003751550.1| poly(A) polymerase I [Ralstonia solanacearum PSI07] gi|299077615|emb|CBJ50250.1| poly(A) polymerase I [Ralstonia solanacearum PSI07] Length = 515 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 37/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 69 NAVKVTSTLQEAGYDAFIVGGAVRDLLLGIQPKDFDVATNATPEQVEALFRRSRIIGRRF 128 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + S+ + G+ K RD Sbjct: 129 QIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHAVDASGRVLRD 188 Query: 113 --WKA---DSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 W D+ RRDFT+NA+Y ADQ V DY G+ D+R R ++ IGD H R ED Sbjct: 189 NVWGTQAEDATRRDFTVNAMYYNPADQ--TVHDYHHGMEDMRARLLRMIGDPHTRYREDP 246 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAI 222 +R+LR RF A G D D + A+ G I + + R++ E+ KLL + + ++ Sbjct: 247 VRMLRVVRFAAKTG---FDIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASL 303 Query: 223 VHMYNGGIFKEIFLDVQEISLDQ 245 + G+ + L + +++L+Q Sbjct: 304 QELRKAGLHSGL-LPLLDVALEQ 325 >gi|329943132|ref|ZP_08291906.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10] gi|332287715|ref|YP_004422616.1| poly(A) polymerase [Chlamydophila psittaci 6BC] gi|313848289|emb|CBY17290.1| putative poly(A) polymerase [Chlamydophila psittaci RD1] gi|325507270|gb|ADZ18908.1| poly(A) polymerase [Chlamydophila psittaci 6BC] gi|328814679|gb|EGF84669.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10] Length = 428 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 15/204 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 46 LSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFK----NCILVGK 101 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + +++T RS + + T+D W + D LRRDFTIN L+ D Sbjct: 102 RFRLAHIRFSNQIIEVSTFRSGSADED----CLITKDNLWGTAEEDVLRRDFTINGLFYD 157 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L A Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILAR-AHFTVDPKTLEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 + + L S R++ E+ K+L Sbjct: 217 LQECRYELIKSSQARVFEELIKML 240 >gi|169632007|ref|YP_001705656.1| Poly(A) polymerase PcnA [Mycobacterium abscessus ATCC 19977] gi|169243974|emb|CAM65002.1| Poly(A) polymerase PcnA [Mycobacterium abscessus] Length = 478 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 6/218 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+ + D+D T P++V + + + T I++GTI + R + + Sbjct: 41 LVGGSVRDAALGKPGIDLDFTTDARPEQVQNLVTGWAEAIWDTGIAFGTIGVARRGQRVE 100 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT RSD R +VVF + D +RRDFT+NA+ D G+ D + GL L Sbjct: 101 ITTFRSDSYDQQSRNPEVVFGDSLEGDLVRRDFTVNAMAVKIGPDGPGEFCDPLNGLEAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R + +D LR+LR RF + G + L A L +++ER+ Sbjct: 161 RAGVLDTPSAPEISFGDDPLRMLRAARFVSQLG-FTVAPRVLEALHAMADQLGRITAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +E++KL+ +P+ I + + G+ + +V ++ L Sbjct: 220 QTELDKLIVGAHPVAGIDLLVDSGLGAVVLPEVGQMQL 257 >gi|226954317|ref|ZP_03824781.1| poly(A) polymerase I (PAP) [Acinetobacter sp. ATCC 27244] gi|294649356|ref|ZP_06726787.1| poly(A) polymerase I [Acinetobacter haemolyticus ATCC 19194] gi|226834943|gb|EEH67326.1| poly(A) polymerase I (PAP) [Acinetobacter sp. ATCC 27244] gi|292824726|gb|EFF83498.1| poly(A) polymerase I [Acinetobacter haemolyticus ATCC 19194] Length = 483 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P +V +F + Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDMMLGLNPKDFDAVTNATPAQVKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ G+ D++ RT++F+G+ R ED +R+LR RF A + ID Sbjct: 135 YYQPRKGVVLDFCQGVEDIKTRTLRFLGEPAQRFEEDPVRMLRALRFAAKLNFQ-IDQSI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L V ++ + L+ +S R++ E KL + + + G++K++F ++ Sbjct: 194 LDVFDVEMTQLLRDVSPHRLYDESQKLFTMGHLTQVLPMLIEFGVWKQLFAEI 246 >gi|21325858|dbj|BAC00479.1| tRNA nucleotidyltransferase/poly(A) polymerase [Corynebacterium glutamicum ATCC 13032] Length = 440 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 8/221 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+ + D+D T+ P+ I V T I++GT+ + + Sbjct: 1 MVGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTGIAFGTLSAEKHGQQIE 60 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINAL----YADQQGKVIDYVGGLND 144 ITT RSDL DG R +V F + D +RRDF +NA+ AD + D VGGL D Sbjct: 61 ITTFRSDLY-DGNSRNPEVTFGDTLEGDLIRRDFKVNAMAVEIQADGELTFHDPVGGLED 119 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L T+ +D LR+LR RF + + + A + + + ++ ER Sbjct: 120 LLTHTLDTPATPEQSFNDDPLRMLRAARFVSQLN-FTLAPRVITAMTEMAQQITRITVER 178 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + E++K++ KNP I M GI + I+ ++ + + Q Sbjct: 179 MQVELDKMILGKNPEAGIDLMVESGIAQIIYPEIPAMQMTQ 219 >gi|332799849|ref|YP_004461348.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tepidanaerobacter sp. Re1] gi|332697584|gb|AEE92041.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tepidanaerobacter sp. Re1] Length = 444 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 10/199 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG +RD +MN D DIAT+ P+ + +F + P ++GT+ +I Sbjct: 23 EAYVVGGTIRDLIMNRQNSDFDIATSAFPNEIKSVFPNAK----PYG-NFGTMLVIADGF 77 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLR 146 +IT R+D GR VF D RRDFTIN++ D ++ID G+ D++ Sbjct: 78 KVEITPFRND--APGRKPDYVFGGSIYTDLARRDFTINSIAYDPIDDELIDPFDGIKDIK 135 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 IK G + RI ED LR +R RF A G +ID+ L A K L +S ERI Sbjct: 136 KGVIKCTG-STRRIWEDPLRAMRAARFQAQLG-FSIDASTLYALKSHAKELTGVSQERIR 193 Query: 207 SEINKLLEAKNPLNAIVHM 225 E+ ++L A + +V + Sbjct: 194 DELTRILTADYNFDGLVTL 212 >gi|160897631|ref|YP_001563213.1| poly(A) polymerase [Delftia acidovorans SPH-1] gi|160363215|gb|ABX34828.1| poly(A) polymerase [Delftia acidovorans SPH-1] Length = 529 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 41/263 (15%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D I+++ L ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 DRRAIDVVETLQDAGYEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRAFIIGK 102 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA----------- 115 R++++ + YG + + +++T R+ L A R KA Sbjct: 103 RFRIV--HVVYGRGR---ENEVIEVSTFRAFLDNSAAEAVSGNERTSKAQLAGMHHAVDA 157 Query: 116 ---------------DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHR 159 D+ RRDFTINA+Y D + + V+DY G++D + R ++ IGD R Sbjct: 158 SGRVLRDNVWGPQDQDATRRDFTINAMYYDPRTQIVVDYHKGIDDAKKRMLRMIGDPATR 217 Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKN 217 ED +RI+R RF A K + A ++ + L + R++ E+ KLL+ + Sbjct: 218 YREDPVRIIRAVRFAAKLAGKGFKIEPKTAKPLVECEPLLADVPQSRLFDEMLKLLQTGH 277 Query: 218 PLNAIVHMYNGGIFKEIF--LDV 238 L ++ + G+ + I+ LDV Sbjct: 278 ALASVEQLRGLGLARGIYSLLDV 300 >gi|283458980|ref|YP_003363629.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rothia mucilaginosa DY-18] gi|283135044|dbj|BAI65809.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rothia mucilaginosa DY-18] Length = 474 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 9/194 (4%) Query: 31 IVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGG VRD+L++ D D+ T P++ +I YGTI Sbjct: 30 LVGGIVRDNLLDDGGHFTDFDLTTDATPEQSEQILRGWGEHTWDIGKEYGTISARKNGVV 89 Query: 89 FDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 +++TT R+++ ++D R V F D AD +RRDFTINA+ A G+V+D GG+ DLR Sbjct: 90 YEVTTYRAEVYVSDSRKPTVEFGTDLSADLVRRDFTINAMAAALPSGEVVDLFGGVEDLR 149 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKG-LKILSSER 204 ++ ED LR++R RF A + N++ + + +++ G ++I+S+ER Sbjct: 150 AGVLRTPRSPEESFSEDPLRMMRAARFAARF---NLEVAPEVFEAMREMAGRIEIISAER 206 Query: 205 IWSEINKLLEAKNP 218 + E+ KL+EA P Sbjct: 207 VRDELVKLIEADYP 220 >gi|262199208|ref|YP_003270417.1| poly(A) polymerase [Haliangium ochraceum DSM 14365] gi|262082555|gb|ACY18524.1| poly(A) polymerase [Haliangium ochraceum DSM 14365] Length = 495 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 14/226 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D+D ++ L + K+ +VGG VRD L++ + +D D+AT+ P+++ IF R Sbjct: 22 DADADRVVRRLTRHGHKAYLVGGCVRDLLLDRNPKDFDVATSATPNQIRDIFRNCRI--- 78 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG------RYAKVVFTRDWKADSLRRDFTIN 125 + + K + +T R+ D R+ V + D+ RRDFTIN Sbjct: 79 -IGRRFRLAHVFFGDKIIETSTFRASPKHDDEGELLIRHDNVFGS--ATEDARRRDFTIN 135 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 L+ D + +VIDYVGG +DL +R ++ IGD R ED +R+LR +F A G +I+ Sbjct: 136 GLFYDVRAEEVIDYVGGADDLDSRLVRTIGDPDIRFREDPVRMLRAIKFAARLG-FDIEE 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A ++ + ++ S R+ E+ +LL ++ ++ GI Sbjct: 195 QTYEALVRHRDEIRKCSPVRVGEEVYRLLRGGAARRSMELLHETGI 240 >gi|297584394|ref|YP_003700174.1| polynucleotide adenylyltransferase region [Bacillus selenitireducens MLS10] gi|297142851|gb|ADH99608.1| Polynucleotide adenylyltransferase region [Bacillus selenitireducens MLS10] Length = 384 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 21/186 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ I GGAVRD + DID++T P++V++ F +T+ P I +GTI +I + Sbjct: 20 ETYITGGAVRDLYLGRKASDIDLSTEAGPNQVIKAFERTK----PIGIEFGTILVILEGE 75 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 F++TT R IT+ D RDFTINA+ ++ID G DL Sbjct: 76 GFEVTTFRGTTITE--------------DLACRDFTINAMALSNDWQLIDPFNGRQDLAK 121 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI-KAKKGLKILSSERIW 206 I+ + A +L+D +R++R RF +G + +S+ L+A I + ++ + ERI Sbjct: 122 GLIQTVASAEGTLLDDPIRMIRSLRFALQFGFR--ESEDLIACIQRHADKIRRAAVERIT 179 Query: 207 SEINKL 212 E NK+ Sbjct: 180 GEFNKI 185 >gi|83748968|ref|ZP_00945977.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia solanacearum UW551] gi|207744197|ref|YP_002260589.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum IPO1609] gi|83724391|gb|EAP71560.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia solanacearum UW551] gi|206595602|emb|CAQ62529.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum IPO1609] Length = 516 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 37/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 69 NAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSRIIGRRF 128 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + S+ + G+ K RD Sbjct: 129 QIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHAVDASGRVLRD 188 Query: 113 --WKA---DSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 W D+ RRDFT+NA+Y ADQ V DY G+ D+R R ++ IGD H R ED Sbjct: 189 NVWGTQAEDATRRDFTVNAMYYNPADQ--TVHDYHRGMEDMRARLLRMIGDPHTRYREDP 246 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAI 222 +R+LR RF A G D + + A+ G I + + R++ E+ KLL + + ++ Sbjct: 247 VRMLRAVRFAAKTG---FDIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASL 303 Query: 223 VHMYNGGIFKEIFLDVQEISLDQ 245 + G+ + + L + +++L+Q Sbjct: 304 QELRKAGLHRGL-LPLLDVALEQ 325 >gi|295837774|ref|ZP_06824707.1| tRNA adenylyltransferase [Streptomyces sp. SPB74] gi|295826667|gb|EDY45863.2| tRNA adenylyltransferase [Streptomyces sp. SPB74] Length = 489 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 116/227 (51%), Gaps = 15/227 (6%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +VGG+VRD+L+ D+D T P+ V+ + V I++GT+ C+K Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVWEVGIAFGTVG--CQKAAR 102 Query: 89 ---------FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA-DQQGKVID 137 ++TT RS+ R KV + + D +RRDFT+NA+ + + +D Sbjct: 103 VGEEEQSFQIEVTTYRSEAYDRTSRKPKVSYGDSIEEDLVRRDFTVNAMAVFLPEKRFVD 162 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL+DL + ++ G +D LR+LR RF A + + +D + A + + Sbjct: 163 PHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAADVVAAMTAMAERI 221 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I+S+ER+ +E+NKLL + +P+ + + + G+ +++ ++ + L+ Sbjct: 222 GIVSAERVQAELNKLLLSAHPVKGLRLLVDTGLAEQVLPELPALRLE 268 >gi|240168387|ref|ZP_04747046.1| poly(a) polymerase PcnA [Mycobacterium kansasii ATCC 12478] Length = 480 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 6/213 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P++V ++ V T I +GTI + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPEQVQKLVRSWADAVWDTGIDFGTIGVGKDAYRLE 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R+ +V F D +RRDFT+NA+ + G+ +D +GGL L Sbjct: 101 ITTFRADSYDQVSRHPEVSFGDRLHDDLVRRDFTVNAMAVRVTPNGPGEFLDPLGGLASL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R++ + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 161 RDKVLDTPAPPSESFGDDPLRMLRAARFVSQLG-FTVAPRVRTAIEEMAPQLGRISAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +E++KLL +P+ I M G+ + + +V Sbjct: 220 GAELDKLLLGDDPVAGIDLMVQSGMGEVVLPEV 252 >gi|117620345|ref|YP_858006.1| poly(A) polymerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561752|gb|ABK38700.1| poly(A) polymerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 499 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 30/245 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNKG ++ +VGG VRD L+ + +D DIAT P+++ +FS R Sbjct: 64 ENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKSLFSNCRLIGRR 123 Query: 68 ---------YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 VI + G + K+ + L+ D Y +V D+ Sbjct: 124 FRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIV------EDAE 177 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NALY + + D+ GGL DL R ++ IGD R ED +R+LR RF A Sbjct: 178 RRDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRAVRFAA-- 235 Query: 178 GEKNID---SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 +D S A IK L+ + + R++ E KL A + L + G+F++ Sbjct: 236 ---KLDMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQQ 292 Query: 234 IFLDV 238 +F V Sbjct: 293 LFPQV 297 >gi|319792304|ref|YP_004153944.1| poly(a) polymerase [Variovorax paradoxus EPS] gi|315594767|gb|ADU35833.1| poly(A) polymerase [Variovorax paradoxus EPS] Length = 543 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 35/260 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D N+++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F + Sbjct: 42 DERAKNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFIIGR 101 Query: 67 RYKVIPTSISYG------TIKIICRKKYFD-----------------ITTLRSDLITDGR 103 R++++ + YG I++ + Y D + +++ + GR Sbjct: 102 RFRIV--HVVYGRGREHEVIEVSTFRAYMDSAAAEQVAGNERTSKGELASMKHAVDASGR 159 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + + D+ RRDFT+NA+Y D + V+DY G+ D + T++ IGD R E Sbjct: 160 VLRDNVWGPQEEDAARRDFTVNAMYYDPANQVVVDYHNGIKDAQKLTLRMIGDPVTRYRE 219 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A + A+ I++ K L + R++ E+ KLL+ + + Sbjct: 220 DPVRIIRAIRFSAKLAALGFKMEAKTAAPLIESSKLLADVPQSRMFDEMLKLLQTGHAIA 279 Query: 221 AIVHMYNGGIFKEIF--LDV 238 I + G+ I+ LDV Sbjct: 280 TIEQLRKLGLATGIYPLLDV 299 >gi|311693217|gb|ADP96090.1| polyA polymerase [marine bacterium HP15] Length = 443 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 106/223 (47%), Gaps = 40/223 (17%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L LNK ++ +VGG VRD L+ +D DIAT P+ V +F +R + Sbjct: 36 VLHRLNKSGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRNSRL----IGRRF 91 Query: 78 GTIKIICRKKYFDITTLRSD--------------------LITDGRYAKVVFTRDWKADS 117 + ++ ++ ++TT R + L+ D Y + + D+ Sbjct: 92 RIVHVVFGREVIEVTTFRGNAAEADTDTDDDDRRTSEHGLLLRDNVYG------NQEEDA 145 Query: 118 LRRDFTINALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 LRRDFT+NALY + VID+ G+ DLRNR ++ IGD R ED +R+LR RF A Sbjct: 146 LRRDFTVNALYYCIRDFTVIDFANGIEDLRNRQLRLIGDPETRYREDPVRMLRAIRFAAK 205 Query: 177 YG---EKNIDSD-GLVASIKAKKGLKILSSERIWSEINKLLEA 215 G E ++ G +A + L + R++ E+ KL A Sbjct: 206 LGFDIEPETEAPIGELAPL-----LTHIPPARLFDEVLKLFSA 243 >gi|207721701|ref|YP_002252140.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum MolK2] gi|206586863|emb|CAQ17448.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum MolK2] Length = 516 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 37/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 69 NAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSRIIGRRF 128 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + S+ + G+ K RD Sbjct: 129 QIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHAVDASGRVLRD 188 Query: 113 --WKA---DSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 W D+ RRDFT+NA+Y ADQ V DY G+ D+R R ++ IGD H R ED Sbjct: 189 NVWGTQAEDATRRDFTVNAMYYNPADQ--TVHDYHRGMEDMRARLLRMIGDPHTRYREDP 246 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAI 222 +R+LR RF A G D + + A+ G I + + R++ E+ KLL + + ++ Sbjct: 247 VRMLRAVRFAAKTG---FDIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASL 303 Query: 223 VHMYNGGIFKEIFLDVQEISLDQ 245 + G+ + + L + +++L+Q Sbjct: 304 QELRKAGLHRGL-LPLLDVALEQ 325 >gi|146308605|ref|YP_001189070.1| poly(A) polymerase [Pseudomonas mendocina ymp] gi|145576806|gb|ABP86338.1| poly(A) polymerase [Pseudomonas mendocina ymp] Length = 463 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 12/209 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I+++ L K ++ +VGG VRD L+++ +D D+AT+ P++V F R +K+ Sbjct: 43 ISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATSATPEQVRAEFRNARVIGRRFKL 102 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFTIN 125 + I++ + + R+ RD + D+ RRDFTIN Sbjct: 103 VHVHFGREIIEVATFRANHPQGEEEENSNQAARHESGRILRDNVYGTLEDDAQRRDFTIN 162 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D Q ++DY G++D+RN ++ IGD R LED +R+LR RF A + +I+ Sbjct: 163 ALYYDPTQEHILDYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKL-DFDIEK 221 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLL 213 + L+ + + R++ E+ KL Sbjct: 222 HSAAPIRRLAPMLRDIPAARLFDEVLKLF 250 >gi|241766688|ref|ZP_04764530.1| poly(A) polymerase [Acidovorax delafieldii 2AN] gi|241362988|gb|EER58669.1| poly(A) polymerase [Acidovorax delafieldii 2AN] Length = 526 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 31/258 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 DRRAAEVVATLKQAGFEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRAFIIGK 102 Query: 67 RYKVIPTSISYG----TIKIICRKKYFD-----------------ITTLRSDLITDGRYA 105 R++++ G I++ + Y D ++ ++ + GR Sbjct: 103 RFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAGQVSGNEKTSKAQLSGMQHAVDASGRVL 162 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + D+ RRDFT+NA+Y D + V+DY GL D + +T++ IGD R ED Sbjct: 163 RDNVWGPQDEDATRRDFTVNAMYYDPVSQIVVDYHKGLQDAKKKTLRMIGDPATRYREDP 222 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +RI+R RF A D A+ +++++ L+ + R++ E+ KLL+ + + I Sbjct: 223 VRIIRAVRFAAKLSALGFTLDAKTAAPLVQSQQLLQDVPQSRMFDEMLKLLQTGHAIATI 282 Query: 223 VHMYNGGIFKEIF--LDV 238 + G+ I+ LDV Sbjct: 283 AQLRKLGMATGIYPLLDV 300 >gi|56963834|ref|YP_175565.1| tRNA CCA-pyrophosphorylase [Bacillus clausii KSM-K16] gi|73619751|sp|Q5WGA1|CCA_BACSK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|56910077|dbj|BAD64604.1| poly(A) polymerase [Bacillus clausii KSM-K16] Length = 376 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 123/264 (46%), Gaps = 23/264 (8%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 LN ++ IVGGAVRD L+ V D+DIAT P +V IF+K + + + T+ Sbjct: 14 LNAAGFEAYIVGGAVRDYLLGKDVDDVDIATQASPHQVADIFTKG----VHINQEHKTVL 69 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 I K +ITT + + + + D +RDFTINAL + +VID GG Sbjct: 70 IPGEKGPIEITTYKGETLAE--------------DLQKRDFTINALAMTETREVIDPYGG 115 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL+ R ++ DA R+ ED LR+LR RF + G D + + K L+ + Sbjct: 116 RQDLQKRLLRSY-DAQKRLSEDPLRMLRAARFISSLG-FEADRQLVKETTVQKAALQRCA 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-AEQVFEWKI 260 ER+ E+ KLL+ A + G L +I+ QL++++ +Q ++ Sbjct: 174 RERVVVELEKLLKGMETEAAFAFLQETGAIHS--LPGIQITDSQLAELMRLPKQQWDSGD 231 Query: 261 DSLLRFIVLISWQDKKSILSMAKK 284 + L F + + L + KK Sbjct: 232 RAWLEFAICTGGPSSMAALPLPKK 255 >gi|239930192|ref|ZP_04687145.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291438534|ref|ZP_06577924.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341429|gb|EFE68385.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 475 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 19/230 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P V++I V I++GT+ + Sbjct: 31 ALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVWEVGIAFGTVGAQKEARVG 90 Query: 90 D--------ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYV 139 D +TT RS+ R +V + + D RRDFT+NA+ A + + +D Sbjct: 91 DADRSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLARRDFTVNAMAVALPEKRFVDPY 150 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKAKKG 196 GGL+DL R ++ G +D LR+LR RF A +D + +VA++K G Sbjct: 151 GGLDDLATRVLRTPGTPEESFSDDPLRMLRAARFAA-----QLDFEVAPEVVAAMKEMAG 205 Query: 197 -LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L+I+S+ER+ E+NKL+ + +P + + G+ + + ++ + L++ Sbjct: 206 RLEIVSAERVRDELNKLILSSHPRKGLTLLTETGLAEYVLPELPALRLER 255 >gi|297158774|gb|ADI08486.1| RNA nucleotidyltransferase [Streptomyces bingchenggensis BCW-1] Length = 496 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 20/231 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK-- 87 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ CRK+ Sbjct: 50 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVWEVGIAFGTVG--CRKEGG 107 Query: 88 ---------YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVI 136 +ITT RS+ R +V + D +RRDFT+NA+ A + + I Sbjct: 108 NGNGSSQSFQIEITTYRSEAYDRTSRKPEVSYGDSIDEDLVRRDFTVNAMAVALPRKEFI 167 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKK 195 D GL DL + ++ G +D LR++R RF A + D + ++A++KA Sbjct: 168 DPHNGLEDLAAKVLRTPGTPEESFSDDPLRMMRAARFAAQL---DFDVAPEVIAAMKAMA 224 Query: 196 G-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 G ++I+S+ER+ E+NKL+ A P+ + + + G+ + ++ + L++ Sbjct: 225 GRIEIVSAERVRDELNKLILAARPVKGLRLLVDTGLADHVLPELPALRLER 275 >gi|238896556|ref|YP_002921297.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Klebsiella pneumoniae NTUH-K2044] gi|330003939|ref|ZP_08304786.1| multifunctional CCA protein [Klebsiella sp. MS 92-3] gi|238548879|dbj|BAH65230.1| tRNA nucleotidyl transferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328536782|gb|EGF63097.1| multifunctional CCA protein [Klebsiella sp. MS 92-3] Length = 413 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 14/197 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + R+ Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQS-----RE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G +AD LRRD T+NAL D G +ID GG NDL Sbjct: 57 EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQNDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R R ++ + A ED LR+LR RF A Y ++ L+A++ L L+ Sbjct: 117 RQRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAMVEAGELAHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E L +NP Sbjct: 174 PERVWKETESALTTRNP 190 >gi|329938655|ref|ZP_08288051.1| RNA nucleotidyltransferase [Streptomyces griseoaurantiacus M045] gi|329302146|gb|EGG46038.1| RNA nucleotidyltransferase [Streptomyces griseoaurantiacus M045] Length = 488 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 118/227 (51%), Gaps = 13/227 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI------- 82 +VGG+VRD+L+ D+D T P+ V+RI V I++GT+ + Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLRIVRPWADAVWDVGIAFGTVGVQKDARVG 104 Query: 83 -ICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYV 139 ++ ++TT RS+ R +V + + D +RRDFT+NA+ A + + ID Sbjct: 105 DTVQRFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKEFIDPH 164 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LK 198 GL+DL R ++ G +D LR++R RF A + + D +VA++K G ++ Sbjct: 165 HGLDDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAPD-VVAAMKEMAGRIE 222 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 I+S+ER+ E+NKLL + +P + + G+ + + ++ + L++ Sbjct: 223 IVSAERVRDELNKLLLSAHPRKGLTLLVETGLAQYVLPELPALRLER 269 >gi|207108716|ref|ZP_03242878.1| poly(A) polymerase [Helicobacter pylori HPKX_438_CA4C1] Length = 264 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 2/156 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD LM ++ +D D+ + L + + K ++V+ T I +GTI + + ++ Sbjct: 109 LVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHGTITALKNHQIYE 168 Query: 91 ITTLRSDL--ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ITT R + I + ++VF+ D RRDF++NA+ +ID G N + N+ Sbjct: 169 ITTFRIEKGHIKHRKPKELVFSAYLTDDLKRRDFSMNAIAYSPTKGLIDPFKGQNAIENQ 228 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 I+ +G A R ED LRILR RF A G K + S Sbjct: 229 IIECVGGARLRFFEDALRILRALRFSATLGFKIVPS 264 >gi|262042281|ref|ZP_06015446.1| multifunctional CCA protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040345|gb|EEW41451.1| multifunctional CCA protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 413 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 14/197 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + R+ Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQS-----RE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G +AD LRRD T+NAL D G +ID GG NDL Sbjct: 57 EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQNDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R R ++ + A ED LR+LR RF A Y ++ L+A++ L L+ Sbjct: 117 RQRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAMVEAGELAHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E L +NP Sbjct: 174 PERVWKETESALTTRNP 190 >gi|241664040|ref|YP_002982400.1| poly(A) polymerase [Ralstonia pickettii 12D] gi|240866067|gb|ACS63728.1| poly(A) polymerase [Ralstonia pickettii 12D] Length = 520 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 127/259 (49%), Gaps = 29/259 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + + S L + + IVGGAVRD L+ + +D D+AT PD+V +F ++R + Sbjct: 72 NAVKVTSTLQEAGYSAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRIIGRRF 131 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + ++ + G+ K RD Sbjct: 132 QIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHAVDASGRVLRD 191 Query: 113 --WKA---DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 W D+ RRDFT+NA+Y + + + DY G+ D+R RT++ IGD R ED +R Sbjct: 192 NVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLRMIGDPLTRYREDPVR 251 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A G +ID D + + + + R++ E+ KLL + + ++ + Sbjct: 252 MLRVVRFAAKTG-FDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQELR 310 Query: 227 NGGIFKEIFLDVQEISLDQ 245 G+ + + L + +++L+Q Sbjct: 311 KAGLHRGL-LPLLDVALEQ 328 >gi|88854483|ref|ZP_01129150.1| poly(A) polymerase [marine actinobacterium PHSC20C1] gi|88816291|gb|EAR26146.1| poly(A) polymerase [marine actinobacterium PHSC20C1] Length = 474 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 3/217 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + +V D+D AT PD +MR+ +GTI + Sbjct: 35 ALVGGPVRDAFLGRAVTDLDFATNANPDEIMRLVKPISEAQWDIGRDFGTIAARIDGESV 94 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRN 147 +ITT R+D R V F + D RRDF++NA+ +V +D GGL L Sbjct: 95 EITTYRADSYNGASRKPVVAFGDSLEKDLERRDFSVNAMALRLPERVLVDPWGGLEHLMT 154 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +T+ G +D LR++R RF + G + + + A + + I+S ER+ Sbjct: 155 KTLTTPGSPEVSFGDDPLRMMRAARFTSQLG-FTVSPETVRAMTELSARIDIVSVERVSD 213 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KLL+ +P+ I + G+ + + ++ + L+ Sbjct: 214 ELTKLLKTDDPVPGIRLLVESGLAEHVLPEIPALKLE 250 >gi|163842263|ref|YP_001626668.1| tRNA nucleotidyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162955739|gb|ABY25254.1| tRNA nucleotidyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 487 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 3/217 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + D+D T +PD + + V ++GTI + R Sbjct: 29 SLVGGPVRDLFLGRQSPDLDFTTDAIPDETLVVVRSWADAVWEIGRAFGTIGLRKRDFTI 88 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT R++ D R +V F +AD RRDFT+NA+ G +++D GG+ DL Sbjct: 89 EVTTYRAEAYDADSRKPEVAFGDSLEADLQRRDFTMNAMALRLPGMELVDPYGGIRDLYA 148 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ G A +D LR++R RF A G ++ + A I + + I+S+ER+ Sbjct: 149 GVLRTPGRAEASFSDDPLRMMRAARFVAQLG-VSLHPEVEGAMIAMAERINIISAERVRD 207 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KL+ A + + N G+ ++ +V + L+ Sbjct: 208 ELTKLICAPQARLGVDVLVNTGLADQMLPEVSALQLE 244 >gi|194471610|ref|ZP_03077594.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358330|ref|ZP_03224002.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457974|gb|EDX46813.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335022|gb|EDZ21786.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 454 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 208 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 209 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLF 265 >gi|328883719|emb|CCA56958.1| tRNA nucleotidyltransferase [Streptomyces venezuelae ATCC 10712] Length = 474 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 129/273 (47%), Gaps = 42/273 (15%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK-- 87 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ C+K+ Sbjct: 31 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVGIAFGTVG--CQKQGR 88 Query: 88 --------YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVID 137 ++TT RS+ R +V + D +RRDFT+NA+ A + + ID Sbjct: 89 VGDADQSFQIEVTTYRSEAYDRTSRKPEVSYGDSIDQDLVRRDFTVNAMAVALPEKEFID 148 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKAK 194 GGL DL R ++ G +D LR++R RF A +D + +V ++K Sbjct: 149 PYGGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAA-----QLDFEVAPEVVTAMKEM 203 Query: 195 KG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------D 237 G ++I+S+ER+ E+NKLL + +P + + + G+ + + D Sbjct: 204 SGRIEIVSAERVREELNKLLLSAHPRKGLGLLVDTGLAEHVLPELPALRLESDEHHRHKD 263 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 V E SL L Q I+ E E D +LR L+ Sbjct: 264 VYEHSLTVLDQAIDLE---EDGPDLVLRLAALL 293 >gi|288550419|ref|ZP_05970346.2| multifunctional CCA protein [Enterobacter cancerogenus ATCC 35316] gi|288315128|gb|EFC54066.1| multifunctional CCA protein [Enterobacter cancerogenus ATCC 35316] Length = 415 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 105/220 (47%), Gaps = 14/220 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P+ ++ + + P + + R+ Sbjct: 4 KSYLVGGAVRDALLGLPVKDKDWVVVGATPEEMLDAGYQQVGRDFPVFLHPKS-----RE 58 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD T+NAL D+ G++ID GG NDL Sbjct: 59 EYALARTERKSGAGYTGFTCYAAPDVTLEQDLLRRDLTVNALAQDEHGQIIDVYGGQNDL 118 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R+R ++ + A ED LR+LR RF A Y + ++ L+ ++ L L+ Sbjct: 119 RDRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIAEETLALMTAMTEAGELAHLT 175 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E L +NP + + G K +F ++ + Sbjct: 176 PERVWKETENALTTRNPQVFFQVLRDCGALKVLFPEIDAL 215 >gi|300742670|ref|ZP_07072691.1| tRNA adenylyltransferase [Rothia dentocariosa M567] gi|300381855|gb|EFJ78417.1| tRNA adenylyltransferase [Rothia dentocariosa M567] Length = 474 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 117/263 (44%), Gaps = 24/263 (9%) Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGG VRD L N + D D+ T P + RI S + YGTI Sbjct: 30 LVGGLVRDELRNTPGEFTDFDMTTNATPAQSERILSAWGEHIWDIGKEYGTISARKNGAV 89 Query: 89 FDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 +++TT R+++ + D R V F D KAD +RRDFTINA+ A G+++D G DL Sbjct: 90 YEVTTYRAEVYVADSRKPTVEFGTDLKADLIRRDFTINAMAAALPSGEIVDLFHGTKDLA 149 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 ++ ED LR++R RF A + + + A + ++I+S+ER+ Sbjct: 150 EGVLRTPRSPQESFSEDPLRMMRAARFAARFN-LTVAPEVFEAMRQMAPRIEIISAERVR 208 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQVI 250 E+ KL+ A P + + G+ + DV E SL + Q I Sbjct: 209 DELIKLICADYPRVGLNLLVETGLADYVLPELPALRMEMDPSHHHKDVYEHSLKVMEQAI 268 Query: 251 EAEQVFEWKI---DSLLRFIVLI 270 E E + D +LRF L+ Sbjct: 269 EKETDADGPCPTPDFVLRFASLL 291 >gi|118620062|ref|YP_908394.1| poly(a) polymerase PcnA [Mycobacterium ulcerans Agy99] gi|118572172|gb|ABL06923.1| poly(a) polymerase PcnA [Mycobacterium ulcerans Agy99] Length = 481 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 17/230 (7%) Query: 31 IVGGAVRDSLMN-LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ L D+D T P ++++I V T I +GTI I Sbjct: 41 LVGGSVRDALLGRLKSPDLDFTTDARPQQILKIVRPWADAVWDTGIEFGTIGIAKNDYRL 100 Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 +ITT R+D R+ +V F + D +RRDFT+NA+ A G+ +D +GGL+ Sbjct: 101 EITTFRADSYDQVSRHPEVRFGERLEDDLVRRDFTVNAMAVRITASGPGEFLDPLGGLSV 160 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKIL 200 LR++ + +D LR+LR RF + G + D+ +A A+ + Sbjct: 161 LRDKVLDTPAAPSVSFGDDPLRMLRAARFVSQLGFAVAPRVRDAIEEMAPQLAR-----I 215 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 S+ER+ +E++KLL ++P+ I M + G+ + + ++ ++++D+ Q Sbjct: 216 SAERVAAELDKLLLGEDPVAGIDLMVHTGMGEVVLPEIGGMQMAIDEHHQ 265 >gi|289523846|ref|ZP_06440700.1| poly A polymerase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502502|gb|EFD23666.1| poly A polymerase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 426 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 17/199 (8%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +IL L KG ++ IVGG VRD M D+DIAT+ P + +F + + KV + Sbjct: 11 DILRLFEKGGFEAYIVGGTVRDLAMGSPFGDVDIATSAKPMDIASLFPEAK-KVGGDPLC 69 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 T I +IT L+ +++++ D RRDFTINA+ D+ G + Sbjct: 70 --TFVIPQDGWTVEITPLQGEVLSE--------------DLSRRDFTINAMALDRFGDLY 113 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D GG+ DL N+ ++F G RI ED +R +R FRF + E + + A ++ Sbjct: 114 DPFGGMEDLVNKVLRFTGSPRERIEEDPVRCIRLFRFASTLREFEVSHSSMNAVRESLSL 173 Query: 197 LKILSSERIWSEINKLLEA 215 K + ERI EI K L Sbjct: 174 FKDVPLERIGKEIYKALRG 192 >gi|33151792|ref|NP_873145.1| polyA polymerase [Haemophilus ducreyi 35000HP] gi|33148013|gb|AAP95534.1| polyA polymerase [Haemophilus ducreyi 35000HP] Length = 523 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L+K ++ +VGG +RD L+ +D+DIAT P+ + +IF + + ++I Sbjct: 102 NALAIVEKLDKAGYEAYLVGGCIRDLLLGHKAKDVDIATNAKPEEIQKIFGR-QCRLI-- 158 Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKV----VFTRD-----WKADSLRRDF 122 + I+ ++ +++ T R+D + + +K+ + RD D+ RRDF Sbjct: 159 GRRFRLAHIVFGREIYEVATFRADHSITASDKISKISDQGMLLRDNVYGSLSDDAERRDF 218 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NALY D + ++I D+ G+NDL++ ++ IG+ R ED +R+LR RF A + Sbjct: 219 TVNALYYDPKRQLIFDFFDGINDLKHAKLRLIGNPVTRYQEDPVRMLRAVRFMAKL-DMF 277 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KLL++ M G+F+++F Sbjct: 278 LDKPSDAPIYELASLLKNIPAARLFDESLKLLQSGQGFKTYQLMRQYGLFEQLF 331 >gi|197120710|ref|YP_002132661.1| poly(A) polymerase [Anaeromyxobacter sp. K] gi|196170559|gb|ACG71532.1| poly(A) polymerase [Anaeromyxobacter sp. K] Length = 556 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 19/215 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRLIGR 113 Query: 68 -YKVIPTSISYGTIKIIC--RKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLR 119 +++ G + + RK D+ ++ + +G ++ TRD + DS+R Sbjct: 114 RFRLAHVYFRAGKVIEVATFRKNPTDV----AEDVGEG-EGDLLITRDNVFGTAEEDSVR 168 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G Sbjct: 169 RDFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLG 228 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 I D A + L + R+ E KLL Sbjct: 229 -FTIAPDTFEAMRRTSGELARCAPARVLEETFKLL 262 >gi|301631513|ref|XP_002944842.1| PREDICTED: hypothetical protein LOC100491036 [Xenopus (Silurana) tropicalis] Length = 745 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 81/308 (26%), Positives = 146/308 (47%), Gaps = 49/308 (15%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D ++++ L + IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 42 DRRAVDVVRTLQDAGFAAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRAFIIGK 101 Query: 67 RYKVIPTSISYG----TIKIICRKKYFDITTLRS---------DLITDGRYA-----KVV 108 R++++ G I++ + Y D + ++D ++A +V+ Sbjct: 102 RFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAEQVSGNERTSKAQLSDMQHAVDASGRVL 161 Query: 109 FTRDWKA---DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 W D+ RRDFT+NA+Y D + + V+DY G+ D + R ++ IGD R ED Sbjct: 162 RDNVWGPQDQDAARRDFTVNAMYYDPETQVVVDYHKGIEDAQKRVLRMIGDPATRYREDP 221 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE---------RIWSEINKLLEA 215 +RI+R RF A + S G +++ K G +++S+ R++ E+ KLL+ Sbjct: 222 VRIIRAVRFAA-----KLSSLGF--ALEPKTGKPLVASQHLLQEVPQSRLFDEMLKLLQT 274 Query: 216 KNPLNAIVHMYNGGIFKEIF--LD--VQEISLDQLSQVIE--AEQVFEWKIDSLLRFIVL 269 + L ++ + G+ K I+ LD VQ + + ++ +V E K + + Sbjct: 275 GHALASVQQLQKLGLEKGIYPLLDVVVQRVGNPLVRAALQDTDRRVAEGKAVAPSFLLAC 334 Query: 270 ISWQDKKS 277 + WQD K+ Sbjct: 335 VLWQDVKA 342 >gi|220915422|ref|YP_002490726.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953276|gb|ACL63660.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1] Length = 556 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 19/215 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRLIGR 113 Query: 68 -YKVIPTSISYGTIKIIC--RKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLR 119 +++ G + + RK D+ ++ + +G ++ TRD + DS+R Sbjct: 114 RFRLAHVYFRAGKVIEVATFRKNPTDV----AEDVGEGE-GDLLITRDNVFGTAEEDSVR 168 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G Sbjct: 169 RDFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLG 228 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 I D A + L + R+ E KLL Sbjct: 229 -FTIAPDTFEAMRRTSGELARCAPARVLEETFKLL 262 >gi|270156669|ref|ZP_06185326.1| poly(A) polymerase [Legionella longbeachae D-4968] gi|269988694|gb|EEZ94948.1| poly(A) polymerase [Legionella longbeachae D-4968] Length = 402 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 14/223 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG+VRD L++ + +D D+AT P++V +F R + + I+ ++ Sbjct: 11 QAYIVGGSVRDLLLHKAPKDFDVATNATPNQVKSLFRNGRI----IGRRFKLVHILFHRE 66 Query: 88 YFDITTLRSDLITDGRYA---KVVFTRD-----WKADSLRRDFTINALYAD-QQGKVIDY 138 ++ T RS + D + + RD D+ RRDFTIN+LY + +ID+ Sbjct: 67 IIEVATFRSHVALDENQVTNERGMLVRDNAYGSLDEDAWRRDFTINSLYYNINDSSIIDF 126 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ D+ R I+ IGD R ED +R+LR RF A K + ++ + + Sbjct: 127 TGGVKDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNFK-LAAETAAPFPEISHLIT 185 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +S+ R++ E+ KL + N + G+F +F Q++ Sbjct: 186 HVSNSRLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFPQTQKL 228 >gi|162449988|ref|YP_001612355.1| Poly(A) polymerase [Sorangium cellulosum 'So ce 56'] gi|161160570|emb|CAN91875.1| Poly(A) polymerase [Sorangium cellulosum 'So ce 56'] Length = 416 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 21/245 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 D D+ ++ L + ++ +VGG VRD L++ +D D+AT+ P+ V +F +R Sbjct: 38 DPDVQKVVRRLVRHGFQAYLVGGCVRDLLLDRRPKDFDVATSARPEEVRELFRNSRIIGR 97 Query: 68 -YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA------DSLRR 120 ++++ G K ++ T R + D + R A D+LRR Sbjct: 98 RFRLVHVLFQGG--------KVIEVATFRRNPKEDSDDGSELLIRSDNAFGVAHEDALRR 149 Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF INAL+ D + + ++D+VGG+ D+R + + IGD R ED +RILR +F G Sbjct: 150 DFRINALFYDVEARQILDWVGGMEDVRRQVVHTIGDPETRFREDPIRILRALKFAGRLG- 208 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I D A + + L + + R+ EI +LL I + G+ + +V Sbjct: 209 FAITPDVYDAVVYCRDALALAARPRLSEEILRLLRGGQARRTIYLAWETGVLDVLLPEVS 268 Query: 240 EISLD 244 + D Sbjct: 269 ALLYD 273 >gi|166154621|ref|YP_001654739.1| polyA polymerase [Chlamydia trachomatis 434/Bu] gi|166155496|ref|YP_001653751.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335888|ref|ZP_07224132.1| polyA polymerase [Chlamydia trachomatis L2tet1] gi|165930609|emb|CAP04106.1| polyA polymerase [Chlamydia trachomatis 434/Bu] gi|165931484|emb|CAP07060.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 425 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 47 LSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKN----CILVGK 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + ++ T RS + T+D W + D LRRDFTIN L+ D Sbjct: 103 RFRLAHIRFPNQIIEVATFRSG----SNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++I DY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 +++ L S R++ EI K+L + Sbjct: 218 LQESRHELVKSSQPRVFEEIIKVLSS 243 >gi|255348775|ref|ZP_05380782.1| polyA polymerase [Chlamydia trachomatis 70] gi|255503315|ref|ZP_05381705.1| polyA polymerase [Chlamydia trachomatis 70s] gi|255506994|ref|ZP_05382633.1| polyA polymerase [Chlamydia trachomatis D(s)2923] gi|289525452|emb|CBJ14929.1| polyA polymerase [Chlamydia trachomatis Sweden2] gi|296435004|gb|ADH17182.1| polyA polymerase [Chlamydia trachomatis E/150] gi|296438724|gb|ADH20877.1| polyA polymerase [Chlamydia trachomatis E/11023] Length = 425 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 47 LSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKN----CILVGK 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + ++ T RS + T+D W + D LRRDFTIN L+ D Sbjct: 103 RFRLAHIRFPNQIIEVATFRSG----SNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++I DY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 +++ L S R++ EI K+L + Sbjct: 218 LQESRHELVKSSQPRVFEEIIKVLSS 243 >gi|261364589|ref|ZP_05977472.1| poly(A) polymerase [Neisseria mucosa ATCC 25996] gi|288567172|gb|EFC88732.1| poly(A) polymerase [Neisseria mucosa ATCC 25996] Length = 447 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 22/197 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ IVGGAVRD L+ + +D D+AT P++V +IF ++R + + ++ + Sbjct: 54 KAYIVGGAVRDLLLGVEPKDFDVATDATPEQVRKIFRRSRI----IGRRFQIVHVMTGPE 109 Query: 88 YFDITTLRSD----------LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVI 136 ++TT R ++ D Y + + D++RRDFT NALY D +++ Sbjct: 110 TIEVTTFRGGGKVQQNAHGRIMKDNTYGSI------EEDAMRRDFTCNALYYDPICEEIL 163 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D+ G+ND+ R++ IGDA R ED +RILR R G +S A + Sbjct: 164 DFHNGVNDIAARSLVMIGDAAERYREDPVRILRAVRLSGKLGFSVEESTAAPIPEYASR- 222 Query: 197 LKILSSERIWSEINKLL 213 LK R++ EI KLL Sbjct: 223 LKHEPVARLFDEIMKLL 239 >gi|115311614|sp|Q8ZRQ8|PCNB_SALTY RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein Length = 465 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 30/242 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 46 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 101 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 102 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 161 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA-- 175 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 162 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 219 Query: 176 --HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 H + + +A++ L + R++ E KLL+A N + +F+ Sbjct: 220 NMHISPETAEPIPRLATL-----LNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQP 274 Query: 234 IF 235 +F Sbjct: 275 LF 276 >gi|326559465|gb|EGE09888.1| poly(A) polymerase [Moraxella catarrhalis 7169] gi|326566116|gb|EGE16273.1| poly(A) polymerase [Moraxella catarrhalis BC1] Length = 599 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF R ++I Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFG-GRCRII--G 91 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRD--W---KADSLRRDFTINALY 128 + + ++ ++ T R+ D + + TRD W + D RRDF+INALY Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTEDGMITRDNVWGDIEQDFARRDFSINALY 151 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLG 202 >gi|16763574|ref|NP_459189.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16418686|gb|AAL19148.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261245416|emb|CBG23206.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991868|gb|ACY86753.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156811|emb|CBW16287.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323128504|gb|ADX15934.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987136|gb|AEF06119.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 472 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 30/242 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA-- 175 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 169 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 226 Query: 176 --HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 H + + +A++ L + R++ E KLL+A N + +F+ Sbjct: 227 NMHISPETAEPIPRLATL-----LNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQP 281 Query: 234 IF 235 +F Sbjct: 282 LF 283 >gi|197263544|ref|ZP_03163618.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205357523|ref|ZP_02571164.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197241799|gb|EDY24419.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205331471|gb|EDZ18235.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 454 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 30/242 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA-- 175 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 208 Query: 176 --HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 H + + +A++ L + R++ E KLL+A N + +F+ Sbjct: 209 NMHISPETAEPIPRLATL-----LNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQP 263 Query: 234 IF 235 +F Sbjct: 264 LF 265 >gi|320095130|ref|ZP_08026839.1| polyA polymerase family protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977997|gb|EFW09631.1| polyA polymerase family protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 532 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 3/229 (1%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + ++ ++ +VGG VRD+ + ++ D D+ T+ P R + + V Sbjct: 41 IMELGTVFESAGEEIALVGGPVRDAFLGVAPHDFDLTTSARPGRTEELLGQWGNAVWDIG 100 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI ++TT R+D G R +V F + D RRDFT+NA+ + Sbjct: 101 KEFGTIGARRGDVVVEVTTYRADSYQIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRLPR 160 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GGL DL ++ A +D LRI+R RF A G ++D D + A Sbjct: 161 MALVDPCGGLADLAAGNLRTPVSAEQSFDDDPLRIMRAARFSAQLG-MDVDLDVMNAMED 219 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L I+S+ERI +E+ +L+ + +P I + + G+ + +V ++ Sbjct: 220 MAHRLGIVSAERIRTELERLIVSPHPRRGIELLVHTGVASIVLPEVADL 268 >gi|227549419|ref|ZP_03979468.1| possible tRNA adenylyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227078496|gb|EEI16459.1| possible tRNA adenylyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 493 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 12/242 (4%) Query: 13 SDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 S L+ L+ L +S +VGG VRD+++ D+D T+ P+ + I K Sbjct: 33 SGLLEPLAALFAQRGESLYLVGGPVRDAMLGRLGNDLDFTTSARPEVIAEILGSWGEKTW 92 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GT+ I R + +ITT RSDL DG R +V F + D +RRDF NA+ Sbjct: 93 DTGIEFGTVSSIKRGQQVEITTFRSDLY-DGVTRNPEVTFGDTLEGDLVRRDFACNAMAI 151 Query: 130 D---QQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + + G + D VGGL+D+ +R + +D LR+LR RF + G Sbjct: 152 ELSLRDGTLSPAFHDPVGGLDDILHRVLDTPQAPEISFRDDPLRMLRAARFASQLGFSVA 211 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D A + + ++ ER+ +E++KL+ P I + GI + I +V + Sbjct: 212 DRV-FTAMCEMAGEINRITVERVQAELDKLMLGTLPWEGIDLLVETGIAQHILPEVPALQ 270 Query: 243 LD 244 L+ Sbjct: 271 LE 272 >gi|109521445|ref|YP_655873.1| gp8 [Mycobacterium phage Wildcat] gi|91980897|gb|ABE67613.1| gp8 [Mycobacterium phage Wildcat] Length = 401 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 167/376 (44%), Gaps = 35/376 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK--- 87 +VGG VRD L+ QDIDIAT P+ I K + + +GT +C KK Sbjct: 21 LVGGTVRDMLLGRESQDIDIATDAPPEVSSDILRKWGEEFWDPGVRFGT---VCAKKGDM 77 Query: 88 YFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINAL--YADQQGKVIDYVG--- 140 +TT R+ D R+ KV + + D LRRDFTINA+ + D G V + G Sbjct: 78 EVQVTTFRAAEDYTQGDRHPKVQWGSHIENDLLRRDFTINAIAQHIDPDGHVT-WTGRAQ 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 +D+ R ++ + +D LR++R RF A + ++ ++ ++ + Sbjct: 137 AFSDINRRILRTPINPIKSFTDDPLRLIRAARFQAQLPDFSVATETWEGMESCAPHIRNV 196 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +SERI +E+ K+L A P + + + GI +I L E + + ++A+ W + Sbjct: 197 ASERIVAELEKMLLAPQPFKGAILLESTGI-AQILL--PESAATPILNTVDADLDIRWAV 253 Query: 261 DSLLRFIVLISWQDKKSILSMAK----KFS-LPREIRYFLISFFNCNFNQKTLSIPEIKK 315 ++ W+ + L K F+ +PR +R L+ F+ + Q T S ++++ Sbjct: 254 -----WLFTTPWRQAEKALKRLKVDKRTFTRVPRLLR--LLEIFHAHEIQDTWSPSKVRR 306 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-G 374 D ++ + L Y+ + V W + + +G+DV+ G Sbjct: 307 FKVEAKDDLLAVE-----HLAYHTTGARRYWLAESVGGASAAWHRYVPQSSGEDVIAALG 361 Query: 375 IPPGKKVGNILVHCKQ 390 I G++VG L ++ Sbjct: 362 IAEGREVGVCLKQIQE 377 >gi|254384792|ref|ZP_05000129.1| RNA nucleotidyltransferase [Streptomyces sp. Mg1] gi|194343674|gb|EDX24640.1| RNA nucleotidyltransferase [Streptomyces sp. Mg1] Length = 480 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 3/217 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDAHPEDVLKIVRPWADSVWDVGIAFGTVGAHKLGFQI 104 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + +D GGL DL+ Sbjct: 105 EVTTYRSESYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKEFVDPHGGLEDLQA 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ G +D LR+LR RF A + + + + A ++I+S+ER+ Sbjct: 165 GILRTPGTPEDSFSDDPLRMLRAARFAAQL-DFEVAPEVVAAMTAMADRIEIVSAERVQG 223 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+NKLL + NP + + + G+ + ++ + L+ Sbjct: 224 ELNKLLLSPNPRKGLGLLVDSGLADHVLPELPALRLE 260 >gi|309781368|ref|ZP_07676104.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA] gi|308919781|gb|EFP65442.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA] Length = 521 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 29/259 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + + S L + IVGGAVRD L+ + +D D+AT PD+V +F ++R + Sbjct: 73 NAVKVTSTLQDAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRIIGRRF 132 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + ++ + G+ K RD Sbjct: 133 QIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHAVDASGRVLRD 192 Query: 113 --WKA---DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 W D+ RRDFT+NA+Y + + + DY G+ D+R RT++ IGD R ED +R Sbjct: 193 NVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLRMIGDPLTRYREDPVR 252 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A G +ID D + + + + R++ E+ KLL + + ++ + Sbjct: 253 MLRVVRFAAKTG-FDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQELR 311 Query: 227 NGGIFKEIFLDVQEISLDQ 245 G+ + + L + +++L+Q Sbjct: 312 KAGLHRGL-LPLLDVALEQ 329 >gi|146313095|ref|YP_001178169.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Enterobacter sp. 638] gi|167006457|sp|A4WEI8|CCA_ENT38 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|145319971|gb|ABP62118.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Enterobacter sp. 638] Length = 413 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P+ ++ + + P + T R++Y Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPEEMLNAGYQQVGRDFPVFLHPKT-----REEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R + L G + D LRRD TINAL D +G +ID GG DL+NR Sbjct: 60 LARTERKAGLGYTGFTCYAAPDVTLEQDLLRRDLTINALAQDDEGHIIDAYGGKRDLQNR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + A ED LR+LR RF A Y + ++ L+ ++ A L+ L+ ER Sbjct: 120 LLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETLALMTAMTAAGELEHLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E L +NP + + G K +F ++ + Sbjct: 177 VWKETENALTTRNPQVFFQVLRDCGALKVLFPEIDAL 213 >gi|307330000|ref|ZP_07609152.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces violaceusniger Tu 4113] gi|306884376|gb|EFN15410.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces violaceusniger Tu 4113] Length = 496 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 16/229 (6%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +VGG+VRD+L+ D+D T PD V++I V I++GT+ CRK Sbjct: 50 ALVGGSVRDALLGRLGNDLDFTTDARPDEVLKIVRPWADAVWDVGIAFGTVG--CRKDMA 107 Query: 89 ----------FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVI 136 +ITT RS+ R +V + + D +RRDFT+NA+ A Q + I Sbjct: 108 AGSGSDQSFQIEITTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPQKEFI 167 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D GL DL R ++ G +D LR++R RF A + + + + A Sbjct: 168 DPHHGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAPEVVAAMTSMADR 226 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + I+S+ER+ E+NKL+ A +P + + G+ + ++ + L++ Sbjct: 227 IDIVSAERVRDELNKLILADHPREGLRLLVETGLADRVLPELPALRLER 275 >gi|330721489|gb|EGG99534.1| Poly(A) polymerase [gamma proteobacterium IMCC2047] Length = 435 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +LL+ G K+ +VGG +RD L+ + +D DI+T P+ ++++F + R Sbjct: 29 MTAVQTLLDAGF-KAYLVGGCIRDLLLGMKPKDFDISTNARPEDILKLFKRARI----IG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK-----------ADSLRRDFT 123 + + + ++ +ITT R D + + + + D+LRRDFT Sbjct: 84 RRFRIVHVYFGREMLEITTFRGHHPEDDDHPHASRSENGQLLRDNIYGTASEDALRRDFT 143 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NALY D Q V+DY G D++NR ++ IGD R ED +R+LR RF G Sbjct: 144 ANALYYDIQDNTVLDYANGYEDIQNRILRIIGDPEKRYREDPVRMLRALRFAGKLG 199 >gi|218284035|ref|ZP_03489872.1| hypothetical protein EUBIFOR_02475 [Eubacterium biforme DSM 3989] gi|218215454|gb|EEC88992.1| hypothetical protein EUBIFOR_02475 [Eubacterium biforme DSM 3989] Length = 438 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 25/231 (10%) Query: 18 ILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL ++ K D ++ +VGG VRD L++ + D DI T+ P+ ++ +F ++ + T Sbjct: 7 ILEIIQKINDIGYEAYVVGGCVRDYLLDRPIHDYDICTSAKPEVILNLFDRS----VGTG 62 Query: 75 ISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ +ITT R D R+ V + + D RRDFT+NA+ Sbjct: 63 LKHGTVTVLSNSP-VEITTFRLESEYKDHRHPDSVKYVSTIEEDLSRRDFTVNAMAYHPN 121 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSD 185 +ID G DL+ + I+ +G+ R ED LR+LR +RF A G +K+ID++ Sbjct: 122 RGLIDPYKGQFDLKAKVIRCVGNPDRRFNEDALRMLRAYRFCAKLGFSMDETVKKSIDTN 181 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + ++ +S ERI E+ +++E + A + + +F E+ L Sbjct: 182 ATL--------IQYVSIERIVHELKEIMETNPQVLASMTLLLKPVFNELDL 224 >gi|194447575|ref|YP_002044169.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359247|ref|ZP_02668314.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194405879|gb|ACF66098.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337551|gb|EDZ24315.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|312911154|dbj|BAJ35128.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222237|gb|EFX47309.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 437 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 30/242 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA-- 175 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 191 Query: 176 --HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 H + + +A++ L + R++ E KLL+A N + +F+ Sbjct: 192 NMHISPETAEPIPRLATL-----LNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQP 246 Query: 234 IF 235 +F Sbjct: 247 LF 248 >gi|319944457|ref|ZP_08018731.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599] gi|319742418|gb|EFV94831.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599] Length = 488 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 15/213 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRD L+ + +D D+AT P+ V +F + R + + ++ ++ + Sbjct: 85 IVGGGVRDLLLGRAPKDFDVATDASPEAVQSLFRRARI----IGRRFRIVHVMFGRETIE 140 Query: 91 ITTLR---SDLITD--GRY--AKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGL 142 +TT R ++ TD GR V TR+ D+ RRDFT+NALY D + +ID +GG+ Sbjct: 141 VTTFRAAHTNGQTDAHGRMLNDNVFGTRE--EDAYRRDFTVNALYYDPIAETLIDPMGGV 198 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 +DL R ++ IGD R ED +R+LR RF A + +D L L+ + Sbjct: 199 DDLSARLLRMIGDPTTRYREDPVRMLRTVRFAAKL-DFQVDPPTLQPIRTLAPLLENVPP 257 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 R++ E+ KLLE+ + L + + + G+ I Sbjct: 258 ARLFDEVMKLLESGHGLACLQRLRHEGLHHGIL 290 >gi|302559683|ref|ZP_07312025.1| tRNA adenylyltransferase [Streptomyces griseoflavus Tu4000] gi|302477301|gb|EFL40394.1| tRNA adenylyltransferase [Streptomyces griseoflavus Tu4000] Length = 488 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 19/230 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI------- 82 +VGG+VRD+L+ D+D T P V+RI V I++GT+ Sbjct: 44 ALVGGSVRDALLGRLGNDLDFTTDARPQDVLRIVRPWADAVWDVGIAFGTVGAQKDARVG 103 Query: 83 -ICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYV 139 R ++TT RS+ R +V + + D +RRDFT+NA+ A + + ID Sbjct: 104 DADRSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKRFIDPH 163 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKAKKG 196 GGL DL R ++ G +D LR++R RF A +D + +VA++K G Sbjct: 164 GGLGDLAARALRTPGTPEASFSDDPLRMMRAARFAA-----QLDFEVAPEVVAAMKEMAG 218 Query: 197 -LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++I+S+ER+ E+NKL+ + +P + + + GI + + ++ + L++ Sbjct: 219 RIEIVSAERVRDELNKLILSAHPRKGLSLLVDTGIAEYVLPELPALHLER 268 >gi|149376132|ref|ZP_01893897.1| poly(A) polymerase [Marinobacter algicola DG893] gi|149359537|gb|EDM47996.1| poly(A) polymerase [Marinobacter algicola DG893] Length = 439 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 32/219 (14%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +LS LN ++ +VGG VRD L+ +D DIAT P+ V +F +R + Sbjct: 36 VLSRLNNAGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRNSRL----IGRRF 91 Query: 78 GTIKIICRKKYFDITTLRSD--------------------LITDGRYAKVVFTRDWKADS 117 + ++ ++ ++TT R + L+ D Y + + D+ Sbjct: 92 RIVHVLFGREVIEVTTFRGNAAEAEADDDDDDRRTSEHGLLLRDNVYGNL------EEDA 145 Query: 118 LRRDFTINALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 LRRDFT+NALY + V+D+ G+ DL NR ++ IGD R ED +R+LR RF A Sbjct: 146 LRRDFTVNALYYCIRDFTVVDFANGIEDLENRQMRLIGDPETRYREDPVRMLRAVRFAAK 205 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 G +I+ D + L + R++ E+ KL A Sbjct: 206 LG-FDIEPDTEAPIRELAPLLTHIPPARLFEEVLKLFSA 243 >gi|295394862|ref|ZP_06805075.1| tRNA adenylyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972195|gb|EFG48057.1| tRNA adenylyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 515 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 3/218 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ + D+D T PD + +I + +GTI ++ R Sbjct: 36 ALVGGSVRDALLGREIPDLDFTTDARPDDIEKIIAPWADTYWDIGRKFGTIGMMKRGYQV 95 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRN 147 +ITT R+D R V F + D +RRDFTI A+ + +D GL L + Sbjct: 96 EITTYRADSYDPQSRKPTVAFGDNLDDDLVRRDFTIGAMAVRLPSRAFVDPYNGLGALES 155 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 RTI G A +D LR++R RF + G ++ + A + I+S+ER+ Sbjct: 156 RTITTPGSATTSFTDDPLRMMRAARFVSQLG-FSLAPEVRAAMSDMADRIAIVSAERVRD 214 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 E+ KL+ P I + + G+ I +V + L++ Sbjct: 215 ELTKLIVGAQPWEGIDALVDTGLADHILPEVSGLRLER 252 >gi|294670147|ref|ZP_06735072.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308074|gb|EFE49317.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 455 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 14/203 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIP 72 ++S L + ++ +VGGAVRD L+ +D D+AT P+ V +F ++ R++++ Sbjct: 41 VVSRLQQAGYEAYVVGGAVRDLLIGAEPKDFDVATNATPEEVRAVFRRSRIIGRRFRIVH 100 Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + TI++ R + + ++ D Y + D+ RRDFT NALY D Sbjct: 101 VMVGPETIEVTTFRGGGKAVQNEQGRIMKDNTYGTLA------EDAGRRDFTCNALYFDP 154 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +G++ID+ G+ D++ R + IGD R ED +RILR R G ++ Sbjct: 155 VKGEIIDFHNGVEDVKARRLVMIGDPAERYQEDPVRILRAVRLAGKLG-FTVEERTAAPI 213 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 K LK R++ EI KLL Sbjct: 214 AKYAGRLKEEPPARLFDEIMKLL 236 >gi|257455099|ref|ZP_05620337.1| poly(A) polymerase [Enhydrobacter aerosaccus SK60] gi|257447432|gb|EEV22437.1| poly(A) polymerase [Enhydrobacter aerosaccus SK60] Length = 742 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 14/174 (8%) Query: 13 SDLIN----ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 +DL N ++S L + ++ IVGG VRD+L+ L +D D T P+++ +F K R Sbjct: 41 ADLPNSIKEVISTLTQAGFEAYIVGGGVRDALLGLKPKDFDAVTNATPNQIKEVFGK-RC 99 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDF 122 ++I + + + ++ T R+ + DG + D D +RRDF Sbjct: 100 RII--GRRFQLCHVYSGRDMIEVATFRAPPKDNNHVTEDGMIMRDNVWGDIYQDVVRRDF 157 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 +INALY ++ D+ GGL D+ NRTI+ +GD R+ ED +R+LR RF A Sbjct: 158 SINALYYQPFDDIVYDFCGGLKDVENRTIRLLGDTQKRVEEDPVRLLRALRFKA 211 >gi|15835306|ref|NP_297065.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] gi|270285478|ref|ZP_06194872.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] gi|270289489|ref|ZP_06195791.1| poly(A) polymerase family protein [Chlamydia muridarum Weiss] gi|301336875|ref|ZP_07225077.1| poly(A) polymerase family protein [Chlamydia muridarum MopnTet14] gi|7190722|gb|AAF39507.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] Length = 425 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K ++ IVGG +RD L+ +D D++T+ P+ V +F I Sbjct: 47 LSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDVSTSAKPEEVKALFKN----CILVGK 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + +++T RS + T+D W + D LRRDFTIN L+ D Sbjct: 103 RFRLAHIRFPNQIIEVSTFRSG----SNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +VI DY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSSEVIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 +++ L S R++ E+ K+L + Sbjct: 218 LRESRHELIKSSQPRVFEELIKVLSS 243 >gi|330828362|ref|YP_004391314.1| poly(A) polymerase [Aeromonas veronii B565] gi|328803498|gb|AEB48697.1| Poly(A) polymerase [Aeromonas veronii B565] Length = 488 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 30/245 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNKG ++ +VGG VRD L+ + +D DIAT P+++ +FS R Sbjct: 56 ENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKALFSNCRLIGRR 115 Query: 68 ---------YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 VI + G + K+ + L+ D Y + + D+ Sbjct: 116 FRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTI------EEDAE 169 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NALY + + D+ GGL DL R ++ IGD R ED +R+LR RF A Sbjct: 170 RRDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRAVRFAA-- 227 Query: 178 GEKNID---SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 +D S A IK L+ + + R++ E KL A + L + G+F++ Sbjct: 228 ---KLDMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQQ 284 Query: 234 IFLDV 238 +F V Sbjct: 285 LFPQV 289 >gi|205357046|ref|ZP_02344374.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324360|gb|EDZ12199.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 437 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 111/241 (46%), Gaps = 22/241 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 191 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 192 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPN 250 Query: 238 V 238 + Sbjct: 251 I 251 >gi|332528518|ref|ZP_08404506.1| poly(A) polymerase [Hylemonella gracilis ATCC 19624] gi|332042029|gb|EGI78367.1| poly(A) polymerase [Hylemonella gracilis ATCC 19624] Length = 571 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 121/266 (45%), Gaps = 51/266 (19%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D ++++ L ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 61 DKRALDVVRTLQDAGHEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKALFRRAFIIGR 120 Query: 67 RYKVIPTSISYG----------TIKIICRKKYFDIT----------TLRSDLI------- 99 R++++ + YG I++ + Y D T +S+L Sbjct: 121 RFRIV--HVVYGRGRQDKGLSEVIEVSTFRAYLDNAAAEQVKGNERTSKSELAGMKHAVD 178 Query: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 + GR + D+ RRDFTINA+Y D + + V+DY GG D + R ++ IGD Sbjct: 179 SSGRVLRDNVWGPQDEDATRRDFTINAMYYDPETEIVVDYHGGFKDAKKRVLRMIGDPAA 238 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG---------LKILSSERIWSEI 209 R ED +RI+R RF A GL ++A G L + R++ E+ Sbjct: 239 RYREDPVRIIRAVRFAAKL-------SGLGFKLEAGTGRPLKDMRSLLADVPQSRLFDEM 291 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIF 235 KLL+ + L + + G+ + I+ Sbjct: 292 LKLLQTGHALATVAQLEKLGLARGIY 317 >gi|238022809|ref|ZP_04603235.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147] gi|237866012|gb|EEP67148.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147] Length = 594 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 117/233 (50%), Gaps = 28/233 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L++ ++ +VGGAVRD L+ + +D D+AT+ P++V R+F ++R Sbjct: 188 LRVLESLHRAGFEAYLVGGAVRDLLLGIEPKDFDVATSATPEQVHRLFRRSRI----IGR 243 Query: 76 SYGTIKIICRKKYFDITTLRSD----------LITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ + +++T RS ++ D Y + + D++RRDFT N Sbjct: 244 RFQIVHVMQGSETIEVSTFRSGGRVMQNASGRIMRDNAYGSL------EQDAMRRDFTCN 297 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +V+D+ GG D+ R + IGDA R ED +R+LR R G+ Sbjct: 298 ALYYDVAAQQVLDFHGGWEDVAVRRLVMIGDAAERYQEDPVRMLRAARL---SGKLGFAV 354 Query: 185 DGLVASIKAKKGLKILSSE---RIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + A+ + GL +L E R++ E+ K+L + N + + G+ + + Sbjct: 355 EAATAAPIGEMGL-LLRHEPVARLFDELLKILLSGNAAGCLAALRRLGLTEAV 406 >gi|255068167|ref|ZP_05320022.1| poly(A) polymerase [Neisseria sicca ATCC 29256] gi|255047594|gb|EET43058.1| poly(A) polymerase [Neisseria sicca ATCC 29256] Length = 456 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 18/195 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++R + + ++ + Sbjct: 54 QAYVVGGAVRDLLLGVEPKDFDIATDATPEQIHKIFRRSRI----IGRRFQIVHVMVGPE 109 Query: 88 YFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGL 142 ++TT R GR K + D++RRDFT NALY D + ++ID+ G+ Sbjct: 110 TIEVTTFRGGGKVQQNAHGRIMKDNTYGSMEEDAMRRDFTCNALYYDPIKEEIIDFHHGV 169 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKG-LK 198 D+ +R + IG+A R ED +RILR R G E+N A I + G LK Sbjct: 170 GDIADRKLVMIGNAAERYQEDPVRILRAVRLSGKLGFDVEENT-----AAPIPEQAGRLK 224 Query: 199 ILSSERIWSEINKLL 213 R++ EI KLL Sbjct: 225 HEPVARLFDEIMKLL 239 >gi|148359072|ref|YP_001250279.1| oly(A) polymerase [Legionella pneumophila str. Corby] gi|296107120|ref|YP_003618820.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy] gi|148280845|gb|ABQ54933.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella pneumophila str. Corby] gi|295649021|gb|ADG24868.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy] Length = 423 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG+VRD L++ + +D DIAT P+ V +F R + + I+ ++ Sbjct: 34 QAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----IGRRFKLVHILFHRE 89 Query: 88 YFDITTLRSDLITDGRY---AKVVFTRD-----WKADSLRRDFTINALYAD-QQGKVIDY 138 ++ T R +D + + + RD D+ RRDFTIN+LY + +ID+ Sbjct: 90 IIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTINSLYYNISDSSIIDF 149 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ D++ + I+ IGD R ED +R+LR RF A + N+ + K + Sbjct: 150 TGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSPETKAPFPKISHLIT 208 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +SS R++ EI KL + + + G+F +F Sbjct: 209 HVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245 >gi|54294419|ref|YP_126834.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella pneumophila str. Lens] gi|53754251|emb|CAH15728.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella pneumophila str. Lens] Length = 423 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG+VRD L++ + +D DIAT P+ V +F R + + I+ ++ Sbjct: 34 QAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----IGRRFKLVHILFHRE 89 Query: 88 YFDITTLRSDLITDGRY---AKVVFTRD-----WKADSLRRDFTINALYAD-QQGKVIDY 138 ++ T R +D + + + RD D+ RRDFTIN+LY + +ID+ Sbjct: 90 IIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTINSLYYNISDSSIIDF 149 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ D++ + I+ IGD R ED +R+LR RF A + N+ + K + Sbjct: 150 TGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSPETKAPFPKISHLIT 208 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +SS R++ EI KL + + + G+F +F Sbjct: 209 HVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245 >gi|308234961|ref|ZP_07665698.1| tRNA adenylyltransferase [Gardnerella vaginalis ATCC 14018] Length = 472 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 10/248 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ + D+D T+ P+ I + +GT+ + R+K Sbjct: 24 ALVGGPVRDMLLHRTSHDLDFCTSAKPEEFEHILRSWGHDGFWDMGRKFGTLGAVRRRKD 83 Query: 88 ----YFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141 +ITT R D D R +V + + D RRDFT+NA+ + +D GG Sbjct: 84 GTEVKVEITTYRCDDYEPDSRKPEVKYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPFGG 143 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 NDL ++ D +D LR++R RF A G I+++ A + L I+S Sbjct: 144 ANDLAKGILRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FTIEANTAEAILDMVSRLDIVS 202 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ EI K+L + NP I M GI + ++ + L ++ + + VFE + Sbjct: 203 AERVRDEITKMLLSANPRAGIEAMVESGIADRVLPEIPALRL-EIDEHHRHKDVFEHTMM 261 Query: 262 SLLRFIVL 269 L R I L Sbjct: 262 VLERAIAL 269 >gi|227834346|ref|YP_002836053.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|227455362|gb|ACP34115.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 545 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 121/262 (46%), Gaps = 27/262 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PD V I + V T I +GT+ + + + Sbjct: 110 LVGGSVRDALLGRLGNDLDFTTPARPDVVYSILEEWAETVWDTGIDFGTVSAAYKGQQIE 169 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 ITT RSD DG R +V++ + D +RRDF +NA L +D + D +GGL+D Sbjct: 170 ITTFRSDSY-DGQSRNPEVMYGDTLEGDLVRRDFKVNAMAIELRSDGTREFHDPMGGLDD 228 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L R + +D LR+LR RF A E ++ A I ++ ++ ER Sbjct: 229 LAKRILDTPDAPEISFHDDPLRMLRAARFAAQL-EFDVAQRVRDAMIDMAGEIQRITVER 287 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------------SLDQLSQ 248 + E+NKL+ P I + + GI +F ++ + SL L Q Sbjct: 288 VQVELNKLICGTAPWKGIDLLVDSGIADYVFPEIPALRMAPDEHAQHKDVYAHSLTVLRQ 347 Query: 249 VIEAEQVFEWKIDSLLRFIVLI 270 +E E E D +LR+ L+ Sbjct: 348 AMEQE---EEGPDLILRWAALL 366 >gi|215432889|ref|ZP_03430808.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis EAS054] gi|289756042|ref|ZP_06515420.1| polyA polymerase [Mycobacterium tuberculosis EAS054] gi|289696629|gb|EFD64058.1| polyA polymerase [Mycobacterium tuberculosis EAS054] Length = 480 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 6/213 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+RV I V T I +GT+ + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAVWDTGIEFGTVGVGKSDHRME 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R+ +V F + D +RRDFT NA+ A G+ +D +GGL L Sbjct: 101 ITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R + + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 161 RAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLG-FAVAPRVRAAIEEMAPQLARISAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +E++KLL ++P I M G+ + ++ Sbjct: 220 AAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEI 252 >gi|307610237|emb|CBW99798.1| poly(A) polymerase [Legionella pneumophila 130b] Length = 423 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG+VRD L++ + +D DIAT P+ V +F R + + I+ ++ Sbjct: 34 QAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----IGRRFKLVHILFHRE 89 Query: 88 YFDITTLRSDLITDGRY---AKVVFTRD-----WKADSLRRDFTINALYAD-QQGKVIDY 138 ++ T R +D + + + RD D+ RRDFTIN+LY + +ID+ Sbjct: 90 IIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTINSLYYNISDSSIIDF 149 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ D++ + I+ IGD R ED +R+LR RF A + N+ + K + Sbjct: 150 TGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSPETKAPFPKISHLIT 208 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +SS R++ EI KL + + + G+F +F Sbjct: 209 HVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245 >gi|15843539|ref|NP_338576.1| polyA polymerase [Mycobacterium tuberculosis CDC1551] gi|31795080|ref|NP_857573.1| poly(A) polymerase PCNA (polynucleotide adenylyltransferase) (NTP polymerase) (RNA adenylating enzyme) (poly(A) polymerase) [Mycobacterium bovis AF2122/97] gi|57117168|ref|YP_178026.1| poly(A) polymerase [Mycobacterium tuberculosis H37Rv] gi|121639818|ref|YP_980042.1| Poly(A) polymerase pcnA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663774|ref|YP_001285297.1| polyA polymerase [Mycobacterium tuberculosis H37Ra] gi|148825115|ref|YP_001289869.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis F11] gi|167969443|ref|ZP_02551720.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis H37Ra] gi|215405965|ref|ZP_03418146.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 02_1987] gi|215413836|ref|ZP_03422501.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 94_M4241A] gi|215425170|ref|ZP_03423089.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92] gi|218755697|ref|ZP_03534493.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503] gi|224992313|ref|YP_002647003.1| poly(A) polymerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800957|ref|YP_003033959.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 1435] gi|254366445|ref|ZP_04982489.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis str. Haarlem] gi|254548911|ref|ZP_05139358.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184837|ref|ZP_05762311.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A] gi|260203120|ref|ZP_05770611.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85] gi|289445508|ref|ZP_06435252.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A] gi|289556175|ref|ZP_06445385.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 605] gi|289572559|ref|ZP_06452786.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85] gi|289747751|ref|ZP_06507129.1| polyA polymerase [Mycobacterium tuberculosis 02_1987] gi|289748445|ref|ZP_06507823.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92] gi|289764098|ref|ZP_06523476.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503] gi|294995590|ref|ZP_06801281.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 210] gi|297636594|ref|ZP_06954374.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 4207] gi|297733589|ref|ZP_06962707.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN R506] gi|298527379|ref|ZP_07014788.1| polyA polymerase [Mycobacterium tuberculosis 94_M4241A] gi|306778272|ref|ZP_07416609.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu001] gi|306778801|ref|ZP_07417138.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu002] gi|306786828|ref|ZP_07425150.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu003] gi|306786957|ref|ZP_07425279.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu004] gi|306791512|ref|ZP_07429814.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu005] gi|306795577|ref|ZP_07433879.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu006] gi|306801552|ref|ZP_07438220.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu008] gi|306805761|ref|ZP_07442429.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu007] gi|306970159|ref|ZP_07482820.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu009] gi|306974390|ref|ZP_07487051.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu010] gi|307082099|ref|ZP_07491269.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu011] gi|307086709|ref|ZP_07495822.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu012] gi|313660920|ref|ZP_07817800.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN V2475] gi|7478690|pir||D70600 probable polynucleotide polymerase - Mycobacterium tuberculosis (strain H37RV) gi|13883916|gb|AAK48390.1| polyA polymerase [Mycobacterium tuberculosis CDC1551] gi|31620678|emb|CAD96123.1| POLY(A) POLYMERASE PCNA (POLYNUCLEOTIDE ADENYLYLTRANSFERASE) (NTP POLYMERASE) (RNA ADENYLATING ENZYME) (POLY(A) POLYMERASE) [Mycobacterium bovis AF2122/97] gi|38490392|emb|CAE55651.1| PROBABLE POLY(A) POLYMERASE PCNA (POLYNUCLEOTIDE ADENYLYLTRANSFERASE) (NTP POLYMERASE) (RNA ADENYLATING ENZYME) (POLY(A) POLYMERASE) [Mycobacterium tuberculosis H37Rv] gi|121495466|emb|CAL73954.1| Poly(A) polymerase pcnA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151957|gb|EBA44002.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis str. Haarlem] gi|148507926|gb|ABQ75735.1| polyA polymerase [Mycobacterium tuberculosis H37Ra] gi|148723642|gb|ABR08267.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis F11] gi|224775429|dbj|BAH28235.1| poly(A) polymerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253322461|gb|ACT27064.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 1435] gi|289418466|gb|EFD15667.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A] gi|289440807|gb|EFD23300.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 605] gi|289536990|gb|EFD41568.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85] gi|289688279|gb|EFD55767.1| polyA polymerase [Mycobacterium tuberculosis 02_1987] gi|289689032|gb|EFD56461.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92] gi|289711604|gb|EFD75620.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503] gi|298497173|gb|EFI32467.1| polyA polymerase [Mycobacterium tuberculosis 94_M4241A] gi|308213421|gb|EFO72820.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu001] gi|308328138|gb|EFP16989.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu002] gi|308328600|gb|EFP17451.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu003] gi|308336255|gb|EFP25106.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu004] gi|308339861|gb|EFP28712.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu005] gi|308343873|gb|EFP32724.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu006] gi|308347657|gb|EFP36508.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu007] gi|308351575|gb|EFP40426.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu008] gi|308352283|gb|EFP41134.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu009] gi|308356285|gb|EFP45136.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu010] gi|308360171|gb|EFP49022.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu011] gi|308363862|gb|EFP52713.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu012] gi|323717323|gb|EGB26528.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CDC1551A] gi|326905740|gb|EGE52673.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis W-148] gi|328460685|gb|AEB06108.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 4207] Length = 480 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 6/213 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+RV I V T I +GT+ + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAVWDTGIEFGTVGVGKSDHRME 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R+ +V F + D +RRDFT NA+ A G+ +D +GGL L Sbjct: 101 ITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R + + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 161 RAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLG-FAVAPRVRAAIEEMAPQLARISAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +E++KLL ++P I M G+ + ++ Sbjct: 220 AAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEI 252 >gi|325198046|gb|ADY93502.1| poly(A) polymerase [Neisseria meningitidis G2136] Length = 445 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L + ++ +VGGAVRD L+ + +D D+AT +P++V ++F ++R Sbjct: 35 NVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----VGRR 90 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 91 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 150 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IGDA R ED +RILR R G E + ++ +A Sbjct: 151 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 210 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 211 SICR--LKHEPVARLFDEIMKLL 231 >gi|86156707|ref|YP_463492.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans 2CP-C] gi|85773218|gb|ABC80055.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans 2CP-C] Length = 549 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 19/215 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRLIGR 113 Query: 68 -YKVIPTSISYGTIKIIC--RKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLR 119 +++ G + + RK D+ ++ + +G ++ TRD + DS+R Sbjct: 114 RFRLAHVYFRAGKVIEVATFRKNPTDV----AEDVGEG-EGDLLITRDNVFGTAEEDSVR 168 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G Sbjct: 169 RDFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLG 228 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 I D A + L + R+ E KLL Sbjct: 229 -FTIAPDTFEAMRRTAGELARCAPARVLEETFKLL 262 >gi|115311613|sp|Q8Z9C3|PCNB_SALTI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein Length = 465 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 46 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 101 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 102 VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 161 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 162 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 219 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 220 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLF 276 >gi|326796836|ref|YP_004314656.1| poly(A) polymerase [Marinomonas mediterranea MMB-1] gi|326547600|gb|ADZ92820.1| poly(A) polymerase [Marinomonas mediterranea MMB-1] Length = 479 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 29/253 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LN + +VGG +RD L+ +S +D D+ T P+ V +FS +R Sbjct: 42 PNALKVLHRLNGAGFDAYLVGGCIRDHLIGMSPKDFDVVTNATPEEVNDLFSNSRL---- 97 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD------------------GRYAKVVFTRD-- 112 + + + ++ +++T R++ + R + + RD Sbjct: 98 IGRRFRIVHVTFGREIIEVSTFRANTANNPPPIPKHDENKSLKNKDTARSSHGIILRDNV 157 Query: 113 WKA---DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 W + D+ RRDFT NALY + + I D+ GL D+ N+ I+ IGD R ED +R+L Sbjct: 158 WGSIDEDAQRRDFTFNALYFNIADRSIHDFCNGLQDIENKQIRIIGDPRERYKEDPVRML 217 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF G +I+ + + L + R++ E+ KLL + + + Sbjct: 218 RAIRFAGKLG-FDIEPETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGQGVTTFYLLREY 276 Query: 229 GIFKEIFLDVQEI 241 G+FK +F D I Sbjct: 277 GLFKYLFPDTDAI 289 >gi|161612545|ref|YP_001586510.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361909|gb|ABX65677.1| hypothetical protein SPAB_00235 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|323228577|gb|EGA12706.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] Length = 472 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 169 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 226 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 227 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLF 283 >gi|204927237|ref|ZP_03218439.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323902|gb|EDZ09097.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 454 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 208 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 209 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLF 265 >gi|33591480|ref|NP_879124.1| poly(A) polymerase [Bordetella pertussis Tohama I] gi|33571122|emb|CAE40619.1| poly(A) polymerase [Bordetella pertussis Tohama I] gi|332380931|gb|AEE65778.1| poly(A) polymerase [Bordetella pertussis CS] Length = 451 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 112/219 (51%), Gaps = 12/219 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRS----DLITD--GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ D TD GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYY 156 Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+ Sbjct: 157 DPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDTATRQ 215 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 ++ + + R++ E+ KLL + ++ + + N Sbjct: 216 PIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254 >gi|332298021|ref|YP_004439943.1| poly(A) polymerase [Treponema brennaborense DSM 12168] gi|332181124|gb|AEE16812.1| poly(A) polymerase [Treponema brennaborense DSM 12168] Length = 426 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 9/170 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D+D + ++S+L + + +VGGAVRD L++ +D DI T P R+ +IF +R Sbjct: 33 DADALRVISMLREYGFDAYVVGGAVRDLLVDKDPKDFDIVTDAPPPRIKKIFRNSRI--- 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + + + K F+++T RS ITDG + D D RRDFT+NALY D Sbjct: 90 -IGRRFRLVHVFFGPKIFEVSTFRS--ITDGSVGNSFGSMD--EDVQRRDFTLNALYYDP 144 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 + +++DYVGG+ D+R I+ + ED +R+LR ++ A G K Sbjct: 145 VREQIVDYVGGVKDIRKGVIRPVIPIERIFEEDPVRMLRAVKYAATTGCK 194 >gi|311104114|ref|YP_003976967.1| poly(A) polymerase [Achromobacter xylosoxidans A8] gi|310758803|gb|ADP14252.1| poly(A) polymerase [Achromobacter xylosoxidans A8] Length = 454 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 14/232 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCEVLRQHGYDAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ D GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRAPASEDQETDEHGRILRDNVFGSHEEDAARRDFTMNALYY 156 Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D +VID+ G+ DL+ R ++ IGD R ED +R+LR RF A ID Sbjct: 157 DPHNEEVIDFHNGVADLKKRQVRIIGDPAKRYREDPVRMLRAVRFAAKLN-GTIDPATRQ 215 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI--FLDV 238 + + + + R++ E+ KLL + ++ + + G+ K + LDV Sbjct: 216 PISTMAELIDNVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHKGLLPLLDV 267 >gi|33598144|ref|NP_885787.1| poly(A) polymerase [Bordetella parapertussis 12822] gi|33566702|emb|CAE38912.1| poly(A) polymerase [Bordetella parapertussis] Length = 451 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 14/220 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRS----DLITD--GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ D TD GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYY 156 Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+ Sbjct: 157 DPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDT-ATR 214 Query: 189 ASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYN 227 I+ L + + + R++ E+ KLL + ++ + + N Sbjct: 215 QPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254 >gi|325144127|gb|EGC66434.1| poly(A) polymerase [Neisseria meningitidis M01-240013] Length = 453 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 16/205 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV 102 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + + D++RRDFT NALY D Sbjct: 103 HVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSI------EEDAMRRDFTCNALYYD 156 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 ++ +++D+ G++D+ R + IG+A R ED +RILR R G E + + G + Sbjct: 157 PEKEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQATAGPI 216 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 217 AESICR--LKHEPVARLFDEIMKLL 239 >gi|194737669|ref|YP_002113212.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300656|ref|ZP_02660022.2| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194713171|gb|ACF92392.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197292033|gb|EDY31383.1| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322616013|gb|EFY12930.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620797|gb|EFY17657.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623852|gb|EFY20689.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627300|gb|EFY24091.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630607|gb|EFY27371.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638174|gb|EFY34875.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640660|gb|EFY37311.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645556|gb|EFY42083.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648150|gb|EFY44617.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657101|gb|EFY53384.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657472|gb|EFY53744.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663791|gb|EFY59991.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666624|gb|EFY62802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672218|gb|EFY68330.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676471|gb|EFY72542.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679437|gb|EFY75482.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686235|gb|EFY82219.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195111|gb|EFZ80294.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197562|gb|EFZ82697.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201168|gb|EFZ86237.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209564|gb|EFZ94497.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212185|gb|EFZ97009.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216489|gb|EGA01215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220633|gb|EGA05081.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225882|gb|EGA10102.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323236810|gb|EGA20886.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239690|gb|EGA23737.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242263|gb|EGA26292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249925|gb|EGA33821.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252354|gb|EGA36205.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255638|gb|EGA39391.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262926|gb|EGA46476.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265411|gb|EGA48907.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271802|gb|EGA55220.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 437 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 191 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 192 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLF 248 >gi|145297842|ref|YP_001140683.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850614|gb|ABO88935.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449] Length = 468 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 22/241 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNKG + +VGG VRD L+ + +D DIAT P+++ +FS R Sbjct: 30 ENALKVLYRLNKGGYDAYLVGGGVRDILLGRTPKDFDIATNATPEQIKALFSNCRLIGRR 89 Query: 68 ---------YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 VI + G + K+ + L+ D Y + + D+ Sbjct: 90 FRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTI------EEDAE 143 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NALY + + D+ GG+ DL R ++ IGD R ED +R+LR RF A Sbjct: 144 RRDFTVNALYYSARDFTLHDFEGGIEDLAQRKLELIGDPETRYREDPVRMLRAMRFAAKL 203 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I + L+ + R++ E KL A + L M G+F+ +F Sbjct: 204 -DMTISPRSAAPIKELAPLLQDIPPARLFEETLKLFLAGDGLATYKLMREYGLFQPLFPQ 262 Query: 238 V 238 V Sbjct: 263 V 263 >gi|238911251|ref|ZP_04655088.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 437 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 191 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 192 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLF 248 >gi|52841768|ref|YP_095567.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628879|gb|AAU27620.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 436 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG+VRD L++ + +D DIAT P+ V +F R + + I+ ++ Sbjct: 47 QAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----IGRRFKLVHILFHRE 102 Query: 88 YFDITTLRSDLITDGRY---AKVVFTRD-----WKADSLRRDFTINALYAD-QQGKVIDY 138 ++ T R +D + + + RD D+ RRDFTIN+LY + +ID+ Sbjct: 103 IIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTINSLYYNISDSSIIDF 162 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ D++ + I+ IGD R ED +R+LR RF A + N+ + K + Sbjct: 163 TGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSPETKAPFPKISHLIT 221 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +SS R++ EI KL + + + G+F +F Sbjct: 222 HVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 258 >gi|16759183|ref|NP_454800.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140733|ref|NP_804075.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213650761|ref|ZP_03380814.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25513273|pir||AI0525 poly(A) polymerase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501473|emb|CAD01345.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136357|gb|AAO67924.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 472 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 169 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 226 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 227 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLF 283 >gi|288556123|ref|YP_003428058.1| tRNA CCA-pyrophosphorylase [Bacillus pseudofirmus OF4] gi|288547283|gb|ADC51166.1| tRNA CCA-pyrophosphorylase [Bacillus pseudofirmus OF4] Length = 389 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 24/230 (10%) Query: 11 HDSDLIN----ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H+ +I+ +LS L++ + IVGGAVRD L + DIDI T P+ + +FSKT Sbjct: 9 HNQKMIDGAEPVLSQLHERGFLAYIVGGAVRDLLCKRPITDIDIVTEATPEEISTVFSKT 68 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + T+ + F++TT R I + D L RDFTIN+ Sbjct: 69 ----FSMNNQHQTVIVRHSGCLFEVTTQRGKSIEE--------------DLLMRDFTINS 110 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + D++G++ D + G +D++N+ I+ A R+ ED LR+LR +RF + G K ++ G Sbjct: 111 IALDKKGQLFDPLDGQSDIKNQVIRSHNPA-ARMSEDPLRMLRAYRFSSDLGFKVAENLG 169 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +A+ L ++ ERI E KL+ A+ + + G++K L Sbjct: 170 EIIRYQAET-LSRVAMERISKEFYKLVSGPFKHTALKELASSGLYKHCGL 218 >gi|33603037|ref|NP_890597.1| poly(A) polymerase [Bordetella bronchiseptica RB50] gi|33568668|emb|CAE34426.1| poly(A) polymerase [Bordetella bronchiseptica RB50] Length = 451 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 14/220 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRS----DLITD--GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ D TD GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYY 156 Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+ Sbjct: 157 DPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDT-ATR 214 Query: 189 ASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYN 227 I+ L + + + R++ E+ KLL + ++ + + N Sbjct: 215 QPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254 >gi|325142111|gb|EGC64537.1| poly(A) polymerase [Neisseria meningitidis 961-5945] Length = 453 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L + ++ +VGGAVRD L+ + +D D+AT +P++V ++F ++R Sbjct: 43 NVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----VGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IGDA R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|293603552|ref|ZP_06685973.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553] gi|292817988|gb|EFF77048.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553] Length = 460 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 12/222 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCEVLRQHGYEGYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ D GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRAPASEDQETDEHGRILRDNVFGSQEEDAKRRDFTMNALYY 156 Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D + VIDY G+ DL+ R ++ IGD R ED +R+LR RF A ID Sbjct: 157 DPHNEEVIDYHNGVADLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GTIDPATRE 215 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + ++ + + R++ E+ KLL + ++ + + G+ Sbjct: 216 PISTMAELIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGL 257 >gi|329896232|ref|ZP_08271410.1| Poly(A) polymerase [gamma proteobacterium IMCC3088] gi|328921903|gb|EGG29270.1| Poly(A) polymerase [gamma proteobacterium IMCC3088] Length = 424 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 26/244 (10%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 H S + L L +KG + + +VGGA+RD L+ + +D D+AT P++V +F +R Sbjct: 15 LHHSAVSVALRLNDKGYE-AYVVGGAIRDMLLGKTPKDFDVATNATPEQVHALFRGSRI- 72 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS--------DLITDGRYAKVVFTRD-----WKAD 116 + + + + ++TT R + GR V RD + D Sbjct: 73 ---VGRRFQIVHVRMGRDIIEVTTFRGHHSESDNKNTAKQGRSG--VLLRDNVFGTLEQD 127 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRD T+NALY D + VIDY GL D+ R +K IGD R ED +R+LR RF A Sbjct: 128 AIRRDLTVNALYYDPVEDTVIDYTEGLRDIAARRLKIIGDPETRYREDPVRMLRVLRFQA 187 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN--PLNAIVHMYNGGIFKE 233 G +IDS A L + + R++ E K A + P + I + +++E Sbjct: 188 KLG-FDIDSATNQALNDCAPLLAQIPAARLFDEFLKGFMAGHAKPFSEI--LLQTPVWQE 244 Query: 234 IFLD 237 +F D Sbjct: 245 LFPD 248 >gi|297627555|ref|YP_003689318.1| tRNA nucleotidyltransferase PcnB [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923320|emb|CBL57920.1| tRNA nucleotidyltransferase PcnB [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 496 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 8/263 (3%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 +L +K ++ +VGG+VRD+L+ D+D T+ PD R+ + V +GT Sbjct: 31 ALFHKAGEELYLVGGSVRDALLGRLGHDLDFTTSADPDTTERLLHRFSSAVWTVGKEFGT 90 Query: 80 I----KIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 I K + +ITT R+D D R V + + + D +RRDFT+NA+ D K Sbjct: 91 IGASKKSNGHELQIEITTFRADAYEPDSRKPIVAYGDNVQDDLVRRDFTVNAMAIDVHSK 150 Query: 135 V-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +D GG+ DL + ++ +D LR++R RF A G K +D A Sbjct: 151 AFVDPHGGIRDLAAKVLRTPTAPEISFSDDPLRMMRACRFAAQLGFK-VDPVTFNAMKAM 209 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + ++I+S ER+ E++KLL A P + + G+ + ++ + L++ + + Sbjct: 210 HERIEIVSPERVRDELSKLLLADAPRPGLNLLVASGLADIVLPELPAMRLER-DEHFRHK 268 Query: 254 QVFEWKIDSLLRFIVLISWQDKK 276 V+E + L + I L +D K Sbjct: 269 DVYEHSLTVLDQAIALEKARDYK 291 >gi|311114001|ref|YP_003985222.1| RNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945495|gb|ADP38199.1| RNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] Length = 495 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 10/248 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ + D+D T+ P+ I + +GT+ + R+K Sbjct: 47 ALVGGPVRDMLLHRTSHDLDFCTSAKPEEFEHILRSWGHDGFWDMGRKFGTLGAVRRRKD 106 Query: 88 ----YFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141 +ITT R D D R +V + + D RRDFT+NA+ + +D GG Sbjct: 107 GTEVKVEITTYRCDDYEPDSRKPEVKYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPFGG 166 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 NDL ++ D +D LR++R RF A G I+++ A + L I+S Sbjct: 167 ANDLAKGILRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FTIEANTAEAILDMVSRLDIVS 225 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ EI K+L + NP I M GI + ++ + L ++ + + VFE + Sbjct: 226 AERVRDEITKMLLSANPRAGIEAMVESGIADRVLPEIPALRL-EIDEHHRHKDVFEHTMM 284 Query: 262 SLLRFIVL 269 L R I L Sbjct: 285 VLERAIAL 292 >gi|71908795|ref|YP_286382.1| Poly(A) polymerase, PcnB [Dechloromonas aromatica RCB] gi|71848416|gb|AAZ47912.1| Poly(A) polymerase, PcnB [Dechloromonas aromatica RCB] Length = 447 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 26/214 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGGAVRD L+ +D DIAT P+ V R F ++R + + ++ + Sbjct: 54 KAYVVGGAVRDLLIGAEPKDFDIATDATPEEVRRAFRRSRI----IGRRFQIVHVMMGSE 109 Query: 88 YFDITTLRSDL---ITDGRYAKVVFTRDWKA---DSLRRDFTINALYADQQGK-VIDYVG 140 ++TT R L + +V+ + + D+ RRDFT NALY D + VIDY Sbjct: 110 TLEVTTFRGMLDEKTKTDEHGRVLHDNVFGSHADDAARRDFTANALYYDPATEAVIDYHH 169 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G+ DL+ +T++ IG+ R ED +R+LR R A GL+ +AKK ++ + Sbjct: 170 GVGDLKQKTLRMIGEPRARYREDPVRMLRAVRLAAKL--------GLMIDPEAKKPIREM 221 Query: 201 S-------SERIWSEINKLLEAKNPLNAIVHMYN 227 + + R++ E+ KLL + + + I + + Sbjct: 222 ADLLENVPAARLFDEMLKLLTSGHSVKCITQLRD 255 >gi|330974599|gb|EGH74665.1| poly(A) polymerase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 412 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 34/208 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPTSISYGTIKI 82 ++ +VGG VRD ++N++ +D D+AT+ P++V F R +K++ I +G Sbjct: 1 QAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLV--HIHFG---- 54 Query: 83 ICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRRDFTINALY 128 ++ ++ T R++ D GR + + D+ RRDFTINALY Sbjct: 55 ---REIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTINALY 111 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSD 185 D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A +G + + Sbjct: 112 YDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQ 171 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLL 213 + A L+ + S R++ E+ KL Sbjct: 172 PIRALAPM---LRDIPSARLFEEVLKLF 196 >gi|237804757|ref|YP_002888911.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273057|emb|CAX09970.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT] Length = 425 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 47 LSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKN----CILVGK 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + ++ T RS + T+D W + D LRRDFTIN L+ D Sbjct: 103 RFRLAHIRFPNQIIEVATFRSG----SNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++I DY GG+ DL+NR +K IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLKTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 ++ L S R++ EI K+L + Sbjct: 218 LQESCHELVKSSQPRVFEEIIKVLSS 243 >gi|56412460|ref|YP_149535.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361396|ref|YP_002141031.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126717|gb|AAV76223.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092871|emb|CAR58297.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 472 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 169 DFTINSLYYSVAD--FTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 226 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 227 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLF 283 >gi|213052337|ref|ZP_03345215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425919|ref|ZP_03358669.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289826507|ref|ZP_06545600.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 437 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 191 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 192 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLF 248 >gi|262374923|ref|ZP_06068157.1| poly(A) polymerase I [Acinetobacter lwoffii SH145] gi|262309936|gb|EEY91065.1| poly(A) polymerase I [Acinetobacter lwoffii SH145] Length = 487 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 123/235 (52%), Gaps = 13/235 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ LNK ++ IVGG VRD ++ L+ +D D T P +V +F + Sbjct: 15 SYILDVIDALNKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPAQVKEVFGRRCRI--- 71 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+INA+ Sbjct: 72 IGRRFELAHVYSGRELVEVATFRAPPKKAVTSAAGMILRDNNWGSIEQDFARRDFSINAM 131 Query: 128 -YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ ++D+ ++T++ +GD R ED +R+LR RF A NID Sbjct: 132 YYQPRKGIVLDFCNAVDDIHSKTLRLLGDPALRFEEDPVRMLRTLRFAAKLN-FNIDEAI 190 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY-NGGIFKEIFLDVQ 239 L V + + + L+ +S R++ E KL + LN ++ M + GI++++F D++ Sbjct: 191 LDVFTPEMTQLLRDVSPHRLYDESQKLFTMGH-LNRVLPMLIDFGIWQQLFADIK 244 >gi|319762115|ref|YP_004126052.1| poly(a) polymerase [Alicycliphilus denitrificans BC] gi|330826054|ref|YP_004389357.1| poly(A) polymerase [Alicycliphilus denitrificans K601] gi|317116676|gb|ADU99164.1| poly(A) polymerase [Alicycliphilus denitrificans BC] gi|329311426|gb|AEB85841.1| poly(A) polymerase [Alicycliphilus denitrificans K601] Length = 522 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 138/301 (45%), Gaps = 35/301 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 44 DRRATDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAFIIGK 103 Query: 67 RYKVIPTSISYG----TIKIICRKKYFD-----------------ITTLRSDLITDGRYA 105 R++++ G I++ + Y D ++ ++ + GR Sbjct: 104 RFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVSGNEKTSKAQLSGMQHAVDASGRVL 163 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD R ED Sbjct: 164 RDNVWGPQDEDATRRDFTVNAMYYDPETQVVVDFHKGIEDAKRRVLRMIGDPATRYREDP 223 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +RI+R RF A + A + + L+ + R++ E+ KLL+ + L ++ Sbjct: 224 VRIIRAVRFAAKLSPLGFALEPKTAKPLLACEPLLQEVPQSRLFDEMLKLLQTGHALASV 283 Query: 223 VHMYNGGIFKEIF--LDVQEISLDQ-LSQVIEAE---QVFEWKIDSLLRFIVLISWQDKK 276 + G+ K I+ LDV DQ Q A+ +V E K + + + WQD K Sbjct: 284 AQLRGLGLEKGIYPLLDVVVGRADQPFVQAALADTDRRVGEGKTVAPSFLLACVLWQDVK 343 Query: 277 S 277 + Sbjct: 344 A 344 >gi|332968885|gb|EGK07932.1| poly(A) polymerase [Kingella kingae ATCC 23330] Length = 461 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 9/161 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L++ ++ +VGGAVRD L+ + +D D+AT P++V R+F ++R + Sbjct: 58 VLRDLHQAGFEAYLVGGAVRDLLLGVEPKDFDVATNATPEQVYRLFKRSRV----IGRRF 113 Query: 78 GTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 + ++ + +++T RS DGR + V + D+ RRDFT NALY D + Sbjct: 114 PIVHVMIGRDTIEVSTFRSGGKVKQNADGRIMQDVAYGTVEQDAHRRDFTCNALYYDIFR 173 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 +V+D+ G+ND++ R + IGD R +ED +RILR R Sbjct: 174 QEVLDFHQGVNDIQARRLVMIGDPKARYMEDPVRILRAIRL 214 >gi|260551951|ref|ZP_05825813.1| poly(A) polymerase I [Acinetobacter sp. RUH2624] gi|260405354|gb|EEW98849.1| poly(A) polymerase I [Acinetobacter sp. RUH2624] Length = 487 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 118/234 (50%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTNASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ ++D++N+T++ +GD R ED +R+LR RF A K ID Sbjct: 135 YYQPRKGIVLDFCKAIDDVKNKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFK-IDPAI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + ++ + L+ +S R++ E KL + + + G++K++F D++ Sbjct: 194 LDIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIR 247 >gi|262183077|ref|ZP_06042498.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 477 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 121/262 (46%), Gaps = 27/262 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PD V I + V T I +GT+ + + + Sbjct: 42 LVGGSVRDALLGRLGNDLDFTTPARPDVVYSILEEWAETVWDTGIDFGTVSAAYKGQQIE 101 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 ITT RSD DG R +V++ + D +RRDF +NA L +D + D +GGL+D Sbjct: 102 ITTFRSDSY-DGQSRNPEVMYGDTLEGDLVRRDFKVNAMAIELRSDGTREFHDPMGGLDD 160 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L R + +D LR+LR RF A E ++ A I ++ ++ ER Sbjct: 161 LAKRILDTPDAPEISFHDDPLRMLRAARFAAQL-EFDVAQRVRDAMIDMAGEIQRITVER 219 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------------SLDQLSQ 248 + E+NKL+ P I + + GI +F ++ + SL L Q Sbjct: 220 VQVELNKLICGTAPWKGIDLLVDSGIADYVFPEIPALRMAPDEHAQHKDVYAHSLTVLRQ 279 Query: 249 VIEAEQVFEWKIDSLLRFIVLI 270 +E E E D +LR+ L+ Sbjct: 280 AMEQE---EEGPDLILRWAALL 298 >gi|254391445|ref|ZP_05006647.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294813723|ref|ZP_06772366.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326442144|ref|ZP_08216878.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197705134|gb|EDY50946.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294326322|gb|EFG07965.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 482 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 11/221 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V+RI + I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLRIMRPWADSIWDVGIAFGTVGSQKGGYQI 104 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + ID GL DL Sbjct: 105 EVTTYRSEAYDRTSRKPEVAYGDSIEDDLVRRDFTVNAMAVALPEKEFIDPHNGLEDLAA 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KILSSE 203 + ++ G +D LR++R RF A +D D ++A K + +I+S+E Sbjct: 165 QVLRTPGTPEESFSDDPLRMMRAARFAAQ-----LDFDVAPEVVEAMKDMAGRIEIVSAE 219 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 R+ E+NKL+ + +P + + + G+ ++ ++ + L+ Sbjct: 220 RVREELNKLILSAHPRKGLALLVDSGLAAQVLPELPALRLE 260 >gi|260198967|ref|ZP_05766458.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T46] gi|289441350|ref|ZP_06431094.1| tRNA adenylyltransferase [Mycobacterium tuberculosis T46] gi|289414269|gb|EFD11509.1| tRNA adenylyltransferase [Mycobacterium tuberculosis T46] Length = 450 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 6/218 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+RV I V T I +GT+ + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAVWDTGIEFGTVGVGKSDHRME 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R+ +V F + D +RRDFT NA+ A G+ +D +GGL L Sbjct: 101 ITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R + + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 161 RAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLG-FAVAPRVRAAIEEMAPQLARISAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +E++KLL ++P I M G+ + ++ + + Sbjct: 220 AAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRM 257 >gi|158319038|ref|YP_001511546.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EAN1pec] gi|158114443|gb|ABW16640.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EAN1pec] Length = 508 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 20/232 (8%) Query: 31 IVGGAVRDSLMNLS---------------VQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 +VGG+VRD+L+ + D+D T P+RV+ I I Sbjct: 43 LVGGSVRDALLGRAGDPSDTSATGGTGGGAPDLDFTTDARPERVLEITRGWAEATWDAGI 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG- 133 ++GT+ + R F++TT RS+ R V + + D +RRDFT+NA+ G Sbjct: 103 AFGTVGLARRGVRFEVTTYRSESYDRTSRNPAVTYGEGLQEDLVRRDFTVNAMAVSVPGH 162 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +D GG+ DL ++ G +D LRI+R RF A G + LVA++++ Sbjct: 163 DFVDLFGGMADLARGVLRTPGPPEASFDDDPLRIMRAARFEAALGLTPVPE--LVAAMRS 220 Query: 194 KKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + + I+S ER+ E+ KL+ +++P + + G+ + ++ + ++ Sbjct: 221 RASRISIVSPERVRDELRKLIASRDPAAGLERLVEVGVADLVLPELGAMRME 272 >gi|299771543|ref|YP_003733569.1| poly(A) polymerase I [Acinetobacter sp. DR1] gi|298701631|gb|ADI92196.1| poly(A) polymerase I [Acinetobacter sp. DR1] Length = 487 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 117/234 (50%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ + +D D T P ++ +F + Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGFNPKDFDAVTNATPSQIKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++ V+D+ ++D++N+T++ +GD R ED +R+LR RF A K IDS+ Sbjct: 135 YYQPRKSIVLDFCKAIDDVKNKTLRLLGDPAQRFEEDPVRMLRTLRFAAKLNFK-IDSNI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + + + L+ +S R++ E KL + + + G++K++F D+Q Sbjct: 194 LDIFDAEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIQ 247 >gi|258544970|ref|ZP_05705204.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826] gi|258519773|gb|EEV88632.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826] Length = 444 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 18/239 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--- 68 D + IL L++ ++ +VGG +RD L+ +D DIAT P+++ IF R Sbjct: 24 DPRALKILRQLDEAGFEAYLVGGCIRDLLLGKQPKDFDIATNARPEQIASIFRNCRLIGR 83 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGR---YAKVVFTRDW---KADSLRRDF 122 + I +G I ++ T R+ + R Y V+ + + D +RRDF Sbjct: 84 RFRLAHIHFGRYII-------EVATFRAPPEREARTDSYGSVLEDNHYGTLEDDVVRRDF 136 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINALY D + I DYVG L+D+ R I+ IGD R ED +R+LR RF A Sbjct: 137 TINALYYDSKNDEIRDYVGALDDINRRIIRIIGDPVARYTEDPVRMLRAARFSAKLN-MP 195 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +++D A + + L+ + + R++ E+ KL + + G+F+ +F D ++ Sbjct: 196 LEADTEAAIVACRDNLRAVPAARLFDEVQKLFMSGYGQTCFDVLQQHGLFEALFPDAEK 254 >gi|326621884|gb|EGE28229.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 454 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 208 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 209 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLF 265 >gi|197249173|ref|YP_002145185.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200386557|ref|ZP_03213169.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|197212876|gb|ACH50273.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199603655|gb|EDZ02200.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 454 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 208 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 209 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLF 265 >gi|254233393|ref|ZP_04926719.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis C] gi|124603186|gb|EAY61461.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis C] Length = 514 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 8/219 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+RV I V T I +GT+ + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAVWDTGIEFGTVGVGKSDHRME 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R+ +V F + D +RRDFT NA+ A G+ +D +GGL L Sbjct: 101 ITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSER 204 R + + +D LR+LR RF + G + A+I+ L +S+ER Sbjct: 161 RAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGFAVAPR--VRAAIEEMAPQLARISAER 218 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + +E++KLL ++P I M G+ + ++ + + Sbjct: 219 VAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRM 257 >gi|257456641|ref|ZP_05621835.1| polyA polymerase family protein [Treponema vincentii ATCC 35580] gi|257445965|gb|EEV21014.1| polyA polymerase family protein [Treponema vincentii ATCC 35580] Length = 395 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 9/163 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 DS+ I I+S L ++ IVGGAVRD L+ + +D DIAT+ P R+ +IF +R Sbjct: 33 DSEAIRIISGLYNAGYEAYIVGGAVRDLLIGKTPKDFDIATSAEPARIRKIFKNSRL--- 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + + + K ++++T RS + +G T D D RRDFT+NALY D Sbjct: 90 -IGKRFRLVHVFYGPKIYEVSTFRS--LEEGSVGNNFGTID--EDVRRRDFTLNALYYDP 144 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 + ++DYVGG+ D+R + + I D H +ED +R++R ++ Sbjct: 145 IKNIIVDYVGGVEDIRKKRLNPIIDLSHIFVEDPVRMIRAIKY 187 >gi|62178754|ref|YP_215171.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205351523|ref|YP_002225324.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855700|ref|YP_002242351.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582031|ref|YP_002635829.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126387|gb|AAX64090.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205271304|emb|CAR36095.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707503|emb|CAR31777.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466558|gb|ACN44388.1| polyA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713208|gb|EFZ04779.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326626549|gb|EGE32892.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 472 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 169 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 226 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 227 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLF 283 >gi|320084436|emb|CBY94229.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 472 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R +D T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGSENDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 169 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 226 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 227 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLF 283 >gi|53803591|ref|YP_114728.1| polyA polymerase [Methylococcus capsulatus str. Bath] gi|53757352|gb|AAU91643.1| polyA polymerase [Methylococcus capsulatus str. Bath] Length = 438 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 18/237 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L L K ++ +VGG VRD L+ +D D+ T P+ + +F R + Sbjct: 62 NALKVLYRLRKAGYQAYLVGGCVRDLLLGREPKDFDVVTDAHPEEIKAVFRNCRLIGRRF 121 Query: 69 KVIPTS-----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++ I T + + R+ + + T ++ D Y + + D+ RRDFT Sbjct: 122 RLAHVHFGEEIIEVATFRALTREPHDEHVTEGGRILRDNVYGTI------EEDAFRRDFT 175 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY + VIDYVGG++D RN +++ IGD R ED +R+LR RF G + Sbjct: 176 VNALYYNISDFSVIDYVGGMDDHRNASLRLIGDPEQRYREDPVRMLRAIRFAVKLG-FTL 234 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + L+ + + R++ EI KL A + + + +F +F + + Sbjct: 235 HPSCAEPIHRLADLLRDIPAARLYDEIVKLFLAGYAVQTFEQLRHFRLFGSLFPETE 291 >gi|119899430|ref|YP_934643.1| poly(A) polymerase [Azoarcus sp. BH72] gi|119671843|emb|CAL95757.1| probable poly(A) polymerase [Azoarcus sp. BH72] Length = 452 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 9/203 (4%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 + S+L + K+ +VGGAVRD L+ +D D+AT+ P+ V +F + R+K++ Sbjct: 42 KVCSVLQEHGYKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRALFRRARIIGRRFKIV 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 TI++ + D + +D GR + D+ RRDFT+NALY D Sbjct: 102 HVMSGPETIEVSTFRALQDAESAETD--EHGRVLRDNVYGSQAEDATRRDFTVNALYYDP 159 Query: 132 QGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++DY G+ D++ +T++ IGD R ED +R+LR R A G +ID Sbjct: 160 GTETIVDYHHGVADVQQKTLRMIGDPRTRYREDPVRMLRAVRLGAKLG-LSIDPAARGPI 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + L+ + + R++ E+ KLL Sbjct: 219 REMASLLENVPAARLFDEMLKLL 241 >gi|300309964|ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum seropedicae SmR1] gi|300072749|gb|ADJ62148.1| tRNA nucleotidyltransferase/poly(A) polymerase protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 21/175 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 + + + L + K+ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 60 PNAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRR 119 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR---SDLITDGRYAKVVFTR---DWKADSLRRD 121 +++ + ++ ++ ++TT R ++ + +V+ + D+ RRD Sbjct: 120 FQI---------VHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRD 170 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 FTINA+Y D + V+DY GG+ D+R++ ++ IG+ R ED +R+LR RF A Sbjct: 171 FTINAMYYDPASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAA 225 >gi|224825650|ref|ZP_03698754.1| poly(A) polymerase [Lutiella nitroferrum 2002] gi|224601874|gb|EEG08053.1| poly(A) polymerase [Lutiella nitroferrum 2002] Length = 455 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 18/229 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + + S L + + +VGGAVRD L++++ +D D+AT+ P++V +F ++ R+K+ Sbjct: 44 LKVTSRLQEAGFTAYVVGGAVRDLLLDVNPKDFDVATSATPEQVHHLFRRSRIIGRRFKI 103 Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + + TI++ R D T ++ D Y + D+ RRDFT+NAL+ Sbjct: 104 VHVMVGPETIEVTTFRGGSIDDTNETGRIMADNSYGS------QEEDAHRRDFTVNALFY 157 Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GL 187 D + ++DY G+ DL+ R + IG R ED +R+LR R A N + D Sbjct: 158 DPSDESIVDYHHGVKDLQARKLVMIGQPARRYQEDPVRMLRAVRLAAKL---NFEIDENT 214 Query: 188 VASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I+A LK R++ E+ KLL + + + + G+ + +F Sbjct: 215 RKPIRAHAHLLKKEPPARLFDEMLKLLMSGQAYSCLCKLREEGLSRGVF 263 >gi|37680945|ref|NP_935554.1| polyA polymerase [Vibrio vulnificus YJ016] gi|37199695|dbj|BAC95525.1| polyA polymerase [Vibrio vulnificus YJ016] Length = 463 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 10/239 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPTSISYGTIKIIC- 84 +VGG VRD L+ S +D DIAT P+++ ++F R +++ I++ Sbjct: 64 LVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFRNCRLIGRRFRLAHIMFGREIIEVATF 123 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLN 143 R + D + S +G + D+ RRDFTINA+Y + + DY GG+ Sbjct: 124 RGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGVE 183 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL +R ++ IGD R ED +R+LR RF A + +I+ D + L+ + + Sbjct: 184 DLEDRLVRLIGDPETRYREDPVRMLRAIRFAAKL-DFDIEEDTAAPIEEMAHLLRDIPAA 242 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 R++ E KLL++ + L M +F+++F + + S +AEQ+ + +DS Sbjct: 243 RLYEESLKLLQSGHGLETYHLMREYNLFQQMFPAISAYFTEDYSS--KAEQMLDLVLDS 299 >gi|311269192|ref|XP_003132382.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like [Sus scrofa] Length = 208 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 1/99 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 I GGAVRD L + QD+D ATT P ++ +F ++I +GTI ++ F Sbjct: 15 IAGGAVRDLLSGVKPQDVDFATTATPVQMKELFQSVGIRMINNKGEKHGTITARLHEENF 74 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 75 EITTLRVDVATDGRHAEVEFTTDWQKDAERRDLTINSMF 113 >gi|205359858|ref|ZP_02832814.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342490|gb|EDZ29254.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 454 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R +D T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGSENDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 208 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 209 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLF 265 >gi|194446356|ref|YP_002039420.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195873676|ref|ZP_02698162.2| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205360723|ref|ZP_02685928.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194405019|gb|ACF65241.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632749|gb|EDX51203.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205347459|gb|EDZ34090.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 437 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 191 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 192 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLF 248 >gi|328948217|ref|YP_004365554.1| poly(A) polymerase [Treponema succinifaciens DSM 2489] gi|328448541|gb|AEB14257.1| poly(A) polymerase [Treponema succinifaciens DSM 2489] Length = 374 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 9/170 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D I I+ L K S IVGGAVRD + + +D DI T P R+ +IF +R Sbjct: 33 DPDAIFIIDCLKKNGFDSYIVGGAVRDLIGGRTPKDFDIVTDATPSRIKKIFRNSRI--- 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + + + K F+++T RS I DG + D D LRRDFT+NALY D Sbjct: 90 -IGKRFRLVHVFFGTKIFEVSTFRS--IIDGSIGNAFGSMD--EDVLRRDFTLNALYYDP 144 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 + ++IDYVGG+ D++ +K + +ED +R++R ++ A G K Sbjct: 145 LKQQIIDYVGGVEDIKKGIVKPVIPIDRIFIEDPVRMIRAVKYGATTGCK 194 >gi|325124553|gb|ADY84076.1| poly(A) polymerase I (PAP) [Acinetobacter calcoaceticus PHEA-2] Length = 465 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 11/229 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + + Sbjct: 1 MIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRI---IGRRF 57 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALY-ADQ 131 + ++ ++ T R+ A + RD W + D RRDF+IN LY + Sbjct: 58 ELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPR 117 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VAS 190 + V+D+ ++D++N+T++ +GD R ED +R+LR RF A K IDSD L + Sbjct: 118 KSIVLDFCKAIDDVKNKTLRLLGDPAQRFEEDPVRMLRTLRFAAKLNFK-IDSDILDIFD 176 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + + L+ +S R++ E KL + + + G++K++F D+Q Sbjct: 177 AEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIQ 225 >gi|148274148|ref|YP_001223709.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147832078|emb|CAN03051.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 476 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 5/218 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + + D+D+ T PDR++ I ++GTI + + Sbjct: 35 ALVGGPVRDAFLGRAATDLDLTTDARPDRILEIVKPVADAHWDIGRAFGTIGARVKGEQV 94 Query: 90 DITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 +ITT R+D DG R +V F + D +RRDFT+NAL Q ++D GG++DL Sbjct: 95 EITTYRTDQY-DGVSRKPEVEFGSSLEEDLVRRDFTVNALAVRLPQVVLVDPSGGIDDLL 153 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + ++ +D LR++R RF + G + +D L A + +S ER+ Sbjct: 154 AQVLRTPVAPEVSFGDDPLRMMRAVRFASQLGFR-LDDAALAAIRDMAPRILDISVERVS 212 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E++KLL P + + GG+ + ++ + L+ Sbjct: 213 DELSKLLRTPEPRAGLDLLVEGGLADHVLPELPAMKLE 250 >gi|198245984|ref|YP_002214141.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940500|gb|ACH77833.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 437 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 191 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 192 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLF 248 >gi|300715373|ref|YP_003740176.1| poly(A)polymerase [Erwinia billingiae Eb661] gi|299061209|emb|CAX58317.1| Poly(A)polymerase [Erwinia billingiae Eb661] Length = 480 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 54 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRLVGRR 113 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + + D T R + RD + D+ RRD Sbjct: 114 FRLAHVMFGPEIIEVATFRGHHEAEQVAEDRNTSQRGQNGMLLRDNIFGTIEDDAQRRDL 173 Query: 123 TINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY V DYVGGLNDL+ ++ IGD R ED +R+LR RF A + + Sbjct: 174 TINSLYYSVSDFSVRDYVGGLNDLQQGIVRLIGDPETRYREDPVRMLRVVRFAAKL-DMS 232 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + ++ + L + R++ E KLL+A + + + +F+ +F Sbjct: 233 VAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGYSTYLQLREYQLFQPLF 286 >gi|89898029|ref|YP_515139.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56] gi|89331401|dbj|BAE80994.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56] Length = 427 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 99/392 (25%), Positives = 165/392 (42%), Gaps = 79/392 (20%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 46 LSVVKTLRKAGYKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFK----NCILVGK 101 Query: 76 SYGTIKIICRKKYFDITTLRSD-------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + I + +++T RS +I D + + D LRRDFTIN L+ Sbjct: 102 RFRLAHIRFSNQIIEVSTFRSGSADEDSLIIKDNLWGTA------EEDVLRRDFTINGLF 155 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D + +IDY GG++DL NR ++ IGD R +D +R+LR + + + +D L Sbjct: 156 YDPTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILSR-AQFTVDPKTL 214 Query: 188 VASIKAKKGLKILSSERIWSEINKL------------------LEAKNPLNAIVHMYNGG 229 A + + L S R++ E+ K+ LE P V N Sbjct: 215 EALRECRYELIKSSQARVFEELIKMLGSGVSSKFFKLTVEYQILEILFPYMDKVFRLNKT 274 Query: 230 IFKEIF--LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + ++ F LDV + ++ Q + Q+ + ++ F V Q K LS+ F Sbjct: 275 LEEQTFACLDVLDKNISQKKYNYDRHQLMAVLLFPIVNFNVRYK-QKKHPNLSLTSVFDY 333 Query: 288 PREI--RYFLISFFNCN----------------------------FNQK---------TL 308 + ++F SF +C+ FN+K L Sbjct: 334 IKNFLGKFFADSFTSCSKKNFILTALILQMQYRLTPLVPTKKTHFFNRKLLHHIRFSEAL 393 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 S+ EI+ L Y DKV+ A ++ + ALH L Sbjct: 394 SLLEIRSLVYPKLDKVLAAWMRYYQALHKKEL 425 >gi|325983710|ref|YP_004296112.1| poly(A) polymerase [Nitrosomonas sp. AL212] gi|325533229|gb|ADZ27950.1| poly(A) polymerase [Nitrosomonas sp. AL212] Length = 462 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 19/214 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ L +D D+AT P+ V +IF ++R + + ++C + + Sbjct: 58 LVGGAVRDLLLGLVPKDFDVATNATPEEVHKIFRRSRI----IGRRFRLVHVMCGAETVE 113 Query: 91 ITTLRSDLITD-------------GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVI 136 ++T R + GR + D++RRDFT+NAL+ D + +++ Sbjct: 114 VSTFRGPSPDEDEDPAFKQSIDQHGRLLHDNVFGSQEEDAMRRDFTVNALFYDPVKEEIL 173 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 DY+ G D++ R ++ IGD R ED +R+LR R A + ID+ Sbjct: 174 DYLHGYEDIKARRMRIIGDPVQRFREDPIRLLRAVR-LATKLDMQIDAQTAKPIGDLAPL 232 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 L+ + R++ E+ KLL + + L +V + G+ Sbjct: 233 LQNVPPSRLFDEMLKLLLSGHALACVVELRMRGL 266 >gi|157374223|ref|YP_001472823.1| metal dependent phosphohydrolase [Shewanella sediminis HAW-EB3] gi|189081880|sp|A8FS72|CCA_SHESH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157316597|gb|ABV35695.1| metal dependent phosphohydrolase [Shewanella sediminis HAW-EB3] Length = 413 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 15/203 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+NL+V+D D + P +++ + + K P + T ++Y Sbjct: 5 LVGGAVRDNLLNLTVKDRDHMVVGATPQQMLEMGYRQVGKDFPVFLHPET-----GQEYA 59 Query: 90 DITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R + G ++ + D LRRD TINA+ D++G++ D GG++D+ NR Sbjct: 60 LARTERKTGVGYGGFSCHASPDVTLEEDLLRRDLTINAIAQDEEGQLYDPYGGVDDINNR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA +ED LR+LR RF A + + ++ ++ I L+ L++ER Sbjct: 120 VLRHVSDA---FVEDPLRVLRVARFAARFHRQGFTIADETLAMMTQISHSGELEALTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYN 227 ++ E++K L +P +H+ N Sbjct: 177 VFLELDKALATDSP-QVFIHVLN 198 >gi|172087758|ref|YP_205549.2| poly(A) polymerase I [Vibrio fischeri ES114] gi|171902346|gb|AAW86661.2| poly(A) polymerase I [Vibrio fischeri ES114] Length = 475 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 25/247 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D+ L + L N G D + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 47 ISRKDLSDNALKVLYRLSNAGYD-AYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFR 105 Query: 65 KTR--------------YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT 110 R VI + G K KK + L+ D Y V Sbjct: 106 NCRLIGRRFRLAHILFGRDVIEVATFRGHHKEDNEKKNISAQSDEGMLLRDNVYGTV--- 162 Query: 111 RDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFT+NA+Y + I DY G+ DL+N I+ IGD R ED +R+LR Sbjct: 163 ---EEDAERRDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLR 219 Query: 170 FFRFFAHYGEKNID-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 RF A D + +A + L+ + + R++ E KLL+ N LN + + Sbjct: 220 AVRFAAKLDMTICDKTAAPIAELSPL--LRDIPAARLFEESLKLLQTGNGLNTYWMLRDF 277 Query: 229 GIFKEIF 235 +F+++F Sbjct: 278 NLFQQLF 284 >gi|317402334|gb|EFV82909.1| Poly(A) polymerase [Achromobacter xylosoxidans C54] Length = 424 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 12/222 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ D GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRAPASEDQETDAHGRILRDNVFGTHEEDAARRDFTMNALYY 156 Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D +VID+ G+ DL+ R I+ IGD R ED +R+LR RF A ID Sbjct: 157 DPHNEEVIDFHNGVADLKKRQIRMIGDPAKRYREDPVRMLRAVRFAAKLN-GTIDPATRQ 215 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 ++ + + R++ E+ KLL + ++ + + G+ Sbjct: 216 PIRTMADLIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGL 257 >gi|237802835|ref|YP_002888029.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT] gi|231274069|emb|CAX10863.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT] Length = 425 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 47 LSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKN----CILVGK 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + ++ T RS + T+D W + D LRRDFTIN L+ D Sbjct: 103 RFRLAHIRFPNQIIEVATFRSG----SNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSAGIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 ++ L S R++ EI K+L + Sbjct: 218 LQESCHELVKSSQPRVFEEIIKVLSS 243 >gi|197336263|ref|YP_002156965.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Vibrio fischeri MJ11] gi|197317753|gb|ACH67200.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Vibrio fischeri MJ11] Length = 475 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 25/247 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D+ L + L N G D + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 47 ISRKDLSDNALKVLYRLSNAGYD-AYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFR 105 Query: 65 KTR--------------YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT 110 R VI + G K KK + L+ D Y V Sbjct: 106 NCRLIGRRFRLAHILFGRDVIEVATFRGHHKEENEKKNISAQSDEGMLLRDNVYGTV--- 162 Query: 111 RDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFT+NA+Y + I DY G+ DL+N I+ IGD R ED +R+LR Sbjct: 163 ---EEDAERRDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLR 219 Query: 170 FFRFFAHYGEKNID-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 RF A D + +A + L+ + + R++ E KLL+ N LN + + Sbjct: 220 AVRFAAKLDMTICDKTAAPIAELSPL--LRDIPAARLFEESLKLLQTGNGLNTYWMLRDF 277 Query: 229 GIFKEIF 235 +F+++F Sbjct: 278 NLFQQLF 284 >gi|262281001|ref|ZP_06058784.1| poly(A) polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257901|gb|EEY76636.1| poly(A) polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 487 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 117/234 (50%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ + +D D T P ++ +F + Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGFNPKDFDAVTNATPAQIKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++ V+D+ ++D++N+T++ +GD R ED +R+LR RF A K IDS+ Sbjct: 135 YYQPRKAIVLDFCKAIDDVKNKTLRLLGDPTQRFEEDPVRMLRTLRFAAKLNFK-IDSNI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + + + L+ +S R++ E KL + + + G++K++F D+Q Sbjct: 194 LDIFDAEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIEFGVWKQLFADIQ 247 >gi|38234901|ref|NP_940668.1| putative tRNA nucleotidyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38201166|emb|CAE50890.1| Putative tRNA nucleotidyltransferase [Corynebacterium diphtheriae] Length = 495 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 8/221 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L++ D+D T P+ V I + V T I +GT+ + + Sbjct: 59 LVGGSVRDALLDELGHDLDCTTDARPEVVSAILEEYAPVVWDTGIEFGTVSAEKDGQQIE 118 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 ITT RSD + DG R +V F + D +RRDFT+NA+ D + D VGG+ND Sbjct: 119 ITTFRSD-VYDGQSRNPEVQFGDTLEGDLIRRDFTVNAMAMEILPDGSMQFHDPVGGMND 177 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + +D LR+LR RF + G ++ A + + +++ER Sbjct: 178 LVAGLLDTPATPQQSFNDDPLRMLRAARFVSQLG-FDLAPRVRHAMTEMADQITRITAER 236 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + E++K++ K P + I M + G+ I+ ++ + L Q Sbjct: 237 VQVELDKMICGKVPWDGIDVMVDTGLADIIYPEISALRLTQ 277 >gi|302543982|ref|ZP_07296324.1| tRNA adenylyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302461600|gb|EFL24693.1| tRNA adenylyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 24/233 (10%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK-- 87 +VGG+VRD+L+ D+D T PD V++I V I++GT+ C+K+ Sbjct: 31 ALVGGSVRDALLGRLGNDLDFTTDARPDEVLKIVRPWADAVWEVGIAFGTVG--CQKEGP 88 Query: 88 ---------YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVI 136 +ITT RS+ R +V + + D +RRDFT+NA+ A Q + I Sbjct: 89 GDNGTHQSFQIEITTYRSEAYDRTSRKPEVSYGASIEEDLVRRDFTVNAMAVALPQKEFI 148 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKA 193 D GL DL R ++ G +D LR++R RF + +D + +VA++KA Sbjct: 149 DPHNGLEDLAARVLRTPGTPQESFSDDPLRMMRAARFAS-----QLDFEVAPEVVAAMKA 203 Query: 194 KKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 G + I+S+ER+ E+NKL+ P + + G+ + ++ + L++ Sbjct: 204 MAGRIDIVSAERVRDELNKLVLGAYPRKGLRLLVETGLADCVLPEIPALRLER 256 >gi|46446942|ref|YP_008307.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila UWE25] gi|46400583|emb|CAF24032.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila UWE25] Length = 424 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 22/254 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + +L L + +VGG+VRD L+ +D DI+T+ P+++ IF + + I Sbjct: 19 DRDALYVLERLRHAGFTAYLVGGSVRDLLLKRVPKDFDISTSARPEQIKAIFQR---QCI 75 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALY 128 + I K +++T R+ G ++ +W + D LRRDFTIN L+ Sbjct: 76 LIGRRFRLAHIRFGHKIIEVSTFRTGENDSG---LILHDNEWGTPEEDVLRRDFTINGLF 132 Query: 129 ADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDS 184 D +IDYV G D++ ++ IG+ R +D +R+LR +F A Y E+ + Sbjct: 133 YDSSNHSIIDYVNGWEDVQKHLLRTIGEPEKRFKQDPVRLLRLLKFHARYNFKIEEQTEQ 192 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 V I+ K S RI EI ++LE+ I + GI +F SL Sbjct: 193 AIHVCRIEITKS----SPARILEEILRMLESGASAPFIKLLAEYGILNILF-----PSLT 243 Query: 245 QLSQVIEAEQVFEW 258 QL + + +F + Sbjct: 244 QLLKTTYGKTIFHY 257 >gi|77461030|ref|YP_350537.1| Poly(A) polymerase, PcnB [Pseudomonas fluorescens Pf0-1] gi|77385033|gb|ABA76546.1| putative polynucleotide adenylyltransferase [Pseudomonas fluorescens Pf0-1] Length = 466 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 26/237 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 +NI+ L ++ +VGG VRD L+ ++ +D D+AT+ P++V F R +K+ Sbjct: 43 VNIVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKL 102 Query: 71 IPTS-----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + I T + + D + +S GR + + D+ RRDFTIN Sbjct: 103 VHIHFGREIIEVATFRANHPQNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTIN 162 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNI 182 ALY D +++DY G++D+RN I+ IGD R ED +R+LR RF A ++G I Sbjct: 163 ALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG---I 219 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + + + L+ + S R++ E+ KL + +G I E+ +D+Q Sbjct: 220 EKHTVQPIRELAPMLREIPSARLFEEVLKLFLSG----------HGAITFEMLVDLQ 266 >gi|170783388|ref|YP_001711722.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169157958|emb|CAQ03168.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 455 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 5/218 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + + D+D+ T PDR++ I ++GTI + + Sbjct: 14 ALVGGPVRDAFLGRAATDLDLTTDARPDRILEIVKPVADAHWDIGRAFGTIGARVKGEQV 73 Query: 90 DITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 +ITT R+D DG R +V F + D +RRDFT+NAL Q ++D GG++DL Sbjct: 74 EITTYRTDQY-DGVSRKPEVEFGSSLEEDLVRRDFTVNALAVRLPQVVLVDPSGGIDDLL 132 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + ++ +D LR++R RF + G + +D L A + +S ER+ Sbjct: 133 AQVLRTPVAPEVSFGDDPLRMMRAVRFASQLGFR-LDDAALAAIHDMAPRILDISVERVS 191 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E++KLL P + + GG+ + ++ + L+ Sbjct: 192 DELSKLLRTPEPRAGLDLLVEGGLADHVLPELPAMKLE 229 >gi|163855127|ref|YP_001629425.1| poly(A) polymerase [Bordetella petrii DSM 12804] gi|163258855|emb|CAP41154.1| poly(A) polymerase [Bordetella petrii] Length = 451 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 22/222 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCEVLRQHGYSAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ D GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRAPASQDQETDEHGRILRDNVFGTHEEDAARRDFTMNALYY 156 Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--- 185 D + VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID Sbjct: 157 DPHTEEVIDYHNGVQDLKKRQVRIIGDPAQRYREDPVRMLRAVRFAAKLN-GSIDPATRK 215 Query: 186 --GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 G +A + ++ + + R++ E+ KLL + ++ + + Sbjct: 216 PIGTMAPL-----IENVPASRLFDEMLKLLTCGHAMDCLRQL 252 >gi|126666509|ref|ZP_01737487.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp. ELB17] gi|126628897|gb|EAZ99516.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp. ELB17] Length = 454 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 29/177 (16%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L LNK ++ +VGG VRD L++ +D DIAT P+ V +F +R + Sbjct: 48 VLHRLNKAGYEAYLVGGGVRDILLSGQPKDFDIATDATPEEVHELFRNSRL----IGRRF 103 Query: 78 GTIKIICRKKYFDITTLRSD------------------LITDGRYAKVVFTRDWKADSLR 119 + ++ ++ ++TT R + L+ D Y + + D+LR Sbjct: 104 RIVHVVFGREVIEVTTFRGNANPADDDDDDRKTSEHGQLLRDNVYGNL------EEDALR 157 Query: 120 RDFTINALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RDFTINALY + VID+ G++DL NR ++ IGD R ED +R+LR RF A Sbjct: 158 RDFTINALYYCIRDFSVIDFANGIDDLNNRQMRLIGDPETRYREDPVRMLRAIRFAA 214 >gi|120553603|ref|YP_957954.1| poly(A) polymerase [Marinobacter aquaeolei VT8] gi|120323452|gb|ABM17767.1| poly(A) polymerase [Marinobacter aquaeolei VT8] Length = 455 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 31/179 (17%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L LNK ++ +VGG VRD L+ +D DIAT P+ V +F +R + Sbjct: 48 VLHRLNKSGYEAYLVGGGVRDILLGGQPKDFDIATNATPEEVHDLFRNSRL----IGRRF 103 Query: 78 GTIKIICRKKYFDITTLRSD--------------------LITDGRYAKVVFTRDWKADS 117 + ++ ++ ++TT R + L+ D Y + + D+ Sbjct: 104 RIVHVVFGREIIEVTTFRGNARDTDDDLADDEHKTSEHGLLLRDNVYG------NQEEDA 157 Query: 118 LRRDFTINALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 LRRDFTINALY + +ID+ G+ DL+NR I+ IGD R ED +R+LR RF A Sbjct: 158 LRRDFTINALYYCIRDFSIIDFANGVQDLKNRQIRLIGDPETRYREDPVRMLRAIRFAA 216 >gi|319778598|ref|YP_004129511.1| tRNA nucleotidyltransferase [Taylorella equigenitalis MCE9] gi|317108622|gb|ADU91368.1| tRNA nucleotidyltransferase [Taylorella equigenitalis MCE9] Length = 378 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 136/279 (48%), Gaps = 27/279 (9%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 L +G D C VGGAVRD L+ L ++D D + P+ + K P I T Sbjct: 13 LTRGLDLYC-VGGAVRDCLLELPIKDKDWVVVGSTPEDMFSRGFKPVGADFPVFIHPNT- 70 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRD--WKADSLRRDFTINALYADQQGKVIDY 138 ++Y T R + G + FT D D RRDFTINA+ D +G V D Sbjct: 71 ----GEEYALARTERK--TSKGYHGFDFFTGDVTLTEDLKRRDFTINAMAVDSRGLVYDP 124 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VASIKAKKG- 196 GGL D+R+RT + I ++ ED +RILR RF + + + ++ D L + K G Sbjct: 125 YGGLTDIRDRTFRHISESFS---EDPVRILRLGRFLSRFPDFSVHFDTLELCRAMVKDGE 181 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-DQLSQVIEAEQV 255 + L SER+W E+++ L K P ++ G F+++F +++ + D+L I A Sbjct: 182 VDSLVSERVWKELSRSLVEKAPSRFFTLLHEVGAFEKLFPNMRLVQKGDELD--IGARLG 239 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 F D + +++V S+ + ++ F++PRE R + Sbjct: 240 F----DLIHQYLVFSSYFND----FQSQNFAVPREFREY 270 >gi|330446882|ref|ZP_08310533.1| poly(A) polymerase I [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491073|dbj|GAA05030.1| poly(A) polymerase I [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 447 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 21/257 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 + + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R Sbjct: 18 ENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEEIKKLFRNCRLIGRR 77 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA------------ 115 +++ I++ + + +++ + D + + +R+ + Sbjct: 78 FRLAHILFGRDIIEVATFRGHHSDAPVQATIPKDSKQKPQISSRNREGMLLRDNVYGTID 137 Query: 116 -DSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINALY + V DY G+ DL NR ++ +GD R ED +R+LR RF Sbjct: 138 EDAERRDFTINALYYSVKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVRMLRAVRF 197 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + +ID + L+ + + R++ E KLL++ L + +F++ Sbjct: 198 AVKL-DMDIDPATAAPIQELSSLLQDIPAARLFEESLKLLQSGQGLETYRMLREYNLFQQ 256 Query: 234 IF-LDVQEISLDQLSQV 249 +F L + DQ SQ Sbjct: 257 LFPLLADHFTEDQSSQT 273 >gi|296272189|ref|YP_003654820.1| polynucleotide adenylyltransferase region [Arcobacter nitrofigilis DSM 7299] gi|296096364|gb|ADG92314.1| Polynucleotide adenylyltransferase region [Arcobacter nitrofigilis DSM 7299] Length = 467 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 16/229 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD-RVMRIFSKTRYKVIPT 73 L IL LL + K +VGG VRD +NL ++D DI + D + + + KV Sbjct: 17 LTKILKLLQEKGAKPILVGGCVRDHFLNLEIKDYDIEVFHIEDFETLTKYLEQFGKVKLV 76 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDW---KADSLRRDFTINALYA 129 SYG +K+ K+ +D R + I G V + + K ++RRDFTINAL Sbjct: 77 GKSYGVLKLSVDKQEYDFALPRVEKKIAKGHKGFEVISNSYLSFKEAAIRRDFTINALGY 136 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDS 184 D +++D GGL DL N+T++ I D + +ED LR+ R +F + + EK+ D Sbjct: 137 DFINEEILDPFGGLEDLENKTLRHIDD--NSFIEDPLRVYRAVQFASRFDFTLDEKSFD- 193 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKL-LEAKNPLNAIVHMYNGGIFK 232 L + + L+ L++ERI+ E+ KL L++ P + GI K Sbjct: 194 --LCKKMVSNNDLEELANERIFEELKKLFLKSTKPSVGFELLKELGILK 240 >gi|15605135|ref|NP_219920.1| polyA polymerase [Chlamydia trachomatis D/UW-3/CX] gi|3328838|gb|AAC68007.1| PolyA Polymerase [Chlamydia trachomatis D/UW-3/CX] gi|296435931|gb|ADH18105.1| polyA polymerase [Chlamydia trachomatis G/9768] gi|296436858|gb|ADH19028.1| polyA polymerase [Chlamydia trachomatis G/11222] gi|296437792|gb|ADH19953.1| polyA polymerase [Chlamydia trachomatis G/11074] gi|297140292|gb|ADH97050.1| polyA polymerase [Chlamydia trachomatis G/9301] gi|297748540|gb|ADI51086.1| Poly(A) polymerase [Chlamydia trachomatis D-EC] gi|297749420|gb|ADI52098.1| Poly(A) polymerase [Chlamydia trachomatis D-LC] Length = 425 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 47 LSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKN----CILVGK 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + ++ T RS + T+D W + D LRRDFTIN L+ D Sbjct: 103 RFRLAHIRFPNQIIEVATFRSG----SNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++I DY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 ++ L S R++ EI K+L + Sbjct: 218 LQESCHELVKSSQPRVFEEIIKVLSS 243 >gi|326423862|ref|NP_760535.2| Poly(A) polymerase [Vibrio vulnificus CMCP6] gi|319999234|gb|AAO10062.2| Poly(A) polymerase [Vibrio vulnificus CMCP6] Length = 453 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 11/265 (4%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D L + L G D + +VGG VRD L+ S +D DIAT P+++ ++F Sbjct: 29 ISRKQISDHALKVLYRLHGAGFD-AYLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFR 87 Query: 65 KTR-----YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 R +++ I++ R + D + S +G + D+ Sbjct: 88 NCRLIGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAE 147 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF A Sbjct: 148 RRDFTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIRFAAKL 207 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + + R++ E KLL++ + L M +F+++F Sbjct: 208 -DFDIEEDTAAPIEEMAYLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPA 266 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDS 262 + + S +AEQ+ + +DS Sbjct: 267 ISAYFTEDYSS--KAEQMLDLVLDS 289 >gi|325134021|gb|EGC56676.1| poly(A) polymerase [Neisseria meningitidis M13399] Length = 453 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEVIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G++D+ R + IG+A R ED +RILR R G E + + G +A Sbjct: 159 KEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQATAGPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|255311216|ref|ZP_05353786.1| polyA polymerase [Chlamydia trachomatis 6276] gi|255317518|ref|ZP_05358764.1| polyA polymerase [Chlamydia trachomatis 6276s] Length = 425 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 47 LSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKN----CILVGK 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + ++ T RS + T+D W + D LRRDFTIN L+ D Sbjct: 103 RFRLAHIRFPNQIIEVATFRSG----SNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++I DY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 ++ L S R++ EI K+L + Sbjct: 218 LQESCHELVKSSQPRVFEEIIKVLSS 243 >gi|300703163|ref|YP_003744765.1| poly(a) polymerase i [Ralstonia solanacearum CFBP2957] gi|299070826|emb|CBJ42123.1| poly(A) polymerase I [Ralstonia solanacearum CFBP2957] Length = 519 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 33/261 (12%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++ R+ Sbjct: 69 NAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQVLFRRSRIIGRRF 128 Query: 69 KVIPTSISYGTIKIICRKKYFD--ITTLRSDLITDGRYAKVV--------------FTRD 112 +++ + G + I F + + S+ + G+ K RD Sbjct: 129 QIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHAVDASGRVLRD 188 Query: 113 --WKA---DSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 W D+ RRDFT+NA+Y ADQ V DY G+ D+R R ++ IGD H R ED Sbjct: 189 NVWGTQAEDATRRDFTVNAMYYNPADQ--TVHDYHRGMEDMRARLLRMIGDPHTRYREDP 246 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 +R+LR RF A G I+ + + + + R++ E+ KLL + + ++ Sbjct: 247 VRMLRAVRFAAKTG-FGIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQE 305 Query: 225 MYNGGIFKEIFLDVQEISLDQ 245 + G+ + + L + +++L+Q Sbjct: 306 LRKAGLHRGL-LPLLDVALEQ 325 >gi|56479470|ref|YP_161059.1| RNA-poly(A) polymerase [Aromatoleum aromaticum EbN1] gi|56315513|emb|CAI10158.1| RNA-poly(A) polymerase [Aromatoleum aromaticum EbN1] Length = 452 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 12/170 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 + ++L + K+ +VGGAVRD L+ +D D+AT+ P+ V +F ++R Sbjct: 43 KVCTVLQEHGHKAFVVGGAVRDLLVGHPPKDYDVATSATPEEVRALFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ + +++T R+ + + GR + D+ RRDFT+NALY Sbjct: 99 FKIVHVMSGPETIEVSTFRASQVAESTETDEHGRVLRDNVFGSQAEDATRRDFTVNALYY 158 Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D +++DY G+ DL+ +T++ IGD R ED +R+LR R A G Sbjct: 159 DPTTEQIVDYHHGVADLKQKTLRIIGDPRARYREDPVRMLRGVRLGAKLG 208 >gi|320155390|ref|YP_004187769.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O] gi|319930702|gb|ADV85566.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O] Length = 453 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 11/265 (4%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D L + L G D + +VGG VRD L+ S +D DIAT P+++ ++F Sbjct: 29 ISRKQISDHALKVLYRLHGAGFD-AFLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFR 87 Query: 65 KTR-----YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 R +++ I++ R + D + S +G + D+ Sbjct: 88 NCRLIGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAE 147 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF A Sbjct: 148 RRDFTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIRFAAKL 207 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + + R++ E KLL++ + L M +F+++F Sbjct: 208 -DFDIEEDTAAPIEEMAYLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPA 266 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDS 262 + + S +AEQ+ + +DS Sbjct: 267 ISAYFTEDYSS--KAEQMLDLVLDS 289 >gi|326567818|gb|EGE17922.1| poly(A) polymerase [Moraxella catarrhalis 12P80B1] gi|326568180|gb|EGE18262.1| poly(A) polymerase [Moraxella catarrhalis BC8] Length = 599 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF R ++I Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFG-GRCRII--G 91 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++ ++ T R+ DG + D + D RRDF+INALY Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLG 202 >gi|330999362|ref|ZP_08323079.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859] gi|329575220|gb|EGG56771.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859] Length = 479 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 13/171 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 I++ L K+ IVGGAVRD L+ +D D+AT P+ V ++ + R+++ Sbjct: 40 ISVCQKLQDAGYKAFIVGGAVRDLLIGAKPKDFDVATDATPEEVKKVTRRAIIIGRRFRL 99 Query: 71 IPTSISYGTIKIICRKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + TI++ + + +T +IT+ VF ++ D+ RRDFT+NA+Y Sbjct: 100 VHVNKGAETIEVATFRGFAKQGVTKDEDGVITNDN----VFGEQYE-DAARRDFTVNAMY 154 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D G + DY GL+D+R R I+ IGD R ED +RILR R A G Sbjct: 155 FDPISGDLYDYHHGLDDIRERKIRMIGDPATRYREDPVRILRAIRIAAKLG 205 >gi|152968724|ref|YP_001333833.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893122|ref|YP_002917856.1| poly(A) polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|150953573|gb|ABR75603.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545438|dbj|BAH61789.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 453 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 18/236 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK +S +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R +D +T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGHTTDRVTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLN- 209 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E+ KLL+A + + +F+ +F Sbjct: 210 MTISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYSLFQPLF 265 >gi|218767953|ref|YP_002342465.1| putative poly(A) polymerase [Neisseria meningitidis Z2491] gi|121051961|emb|CAM08269.1| putative poly(A) polymerase [Neisseria meningitidis Z2491] Length = 453 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGA+RD L+ + +D D+AT +P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----VGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IGDA R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|326572823|gb|EGE22808.1| poly(A) polymerase [Moraxella catarrhalis CO72] Length = 599 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF R ++I Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFG-GRCRII--G 91 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++ ++ T R+ DG + D + D RRDF+INALY Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLG 202 >gi|254516607|ref|ZP_05128666.1| poly(A) polymerase [gamma proteobacterium NOR5-3] gi|219675030|gb|EED31397.1| poly(A) polymerase [gamma proteobacterium NOR5-3] Length = 404 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 20/213 (9%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPT 73 +S L + ++ +VGGAVRD L+ +D DIAT P+ V +FS +R ++++ Sbjct: 1 MSRLRDRDHQAYLVGGAVRDLLLGGHPKDFDIATDATPEEVHALFSNSRIIGRRFRIVHV 60 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFTINALY 128 I++ + + D R ++ + RD + D++RRD T+NALY Sbjct: 61 RFGREVIEVTTFRGHHDDGDPTGPAAK--RSSRGLLLRDNVFGTLEEDAVRRDLTVNALY 118 Query: 129 ADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDS 184 D +V D VGGL+DL R ++ IGD R ED +R+LR RF A EK S Sbjct: 119 YDSGSFEVFDQVGGLDDLEARQVRVIGDPAKRYREDPVRMLRTLRFAAKLDFRVEKG--S 176 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 +A + + L + + R++ E KL A N Sbjct: 177 GAPIAELASL--LDDIPAARLFDEFGKLFLAGN 207 >gi|326573733|gb|EGE23691.1| poly(A) polymerase [Moraxella catarrhalis O35E] Length = 599 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF R ++I Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFG-GRCRII--G 91 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++ ++ T R+ DG + D + D RRDF+INALY Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLG 202 >gi|313668687|ref|YP_004048971.1| poly(A) polymerase [Neisseria lactamica ST-640] gi|313006149|emb|CBN87610.1| putative poly(A) polymerase [Neisseria lactamica 020-06] Length = 453 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 16/205 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV 102 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + + D++RRDFT NALY D Sbjct: 103 HVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSI------EEDAMRRDFTCNALYYD 156 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 ++ +++D+ G+ D+ R + IGDA R ED +RILR R G E + ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPI 216 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 217 AESICR--LKHEPVARLFDEIMKLL 239 >gi|187477229|ref|YP_785253.1| poly(A) polymerase [Bordetella avium 197N] gi|115421815|emb|CAJ48328.1| poly(A) polymerase [Bordetella avium 197N] Length = 452 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 108/217 (49%), Gaps = 12/217 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 41 IKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ ++ + +T R+ + GR + + D+ RRDFT+NALY Sbjct: 97 RFQLVHVVFGQEIIETSTFRAPASAEQETDEHGRILRDNVFGSHEEDAARRDFTMNALYY 156 Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D + VIDY G+ DL+ R I+ IGD R ED +R+LR RF A ID Sbjct: 157 DPHTEEVIDYHNGVQDLKKRQIRMIGDPVTRYREDPVRMLRAVRFAAKLN-GTIDPATRQ 215 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 + ++ + + R++ E+ KLL + ++ + + Sbjct: 216 PIATMAELIENVPASRLFDEMLKLLTCGHAMDCLRQL 252 >gi|311897290|dbj|BAJ29698.1| putative tRNA nucleotidyltransferase [Kitasatospora setae KM-6054] Length = 481 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 19/227 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +VGG+VRD+L+ D+D T P +++++ V I++GT+ RK Sbjct: 39 SLVGGSVRDALLGRLGNDLDFTTDARPQQILKLVKGWADAVWDVGIAFGTVG--ARKDTP 96 Query: 89 -----FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGG 141 +ITT RS+ R +V + + D +RRDFT+NA+ D G+ +D G Sbjct: 97 EGSFLIEITTYRSEAYDRSSRKPEVSYGDSIEQDLVRRDFTVNAMAVDLPGRGFVDPHRG 156 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG---LVASIKA-KKGL 197 L+DL R ++ +D LR++R RF A +D D +VA++ A + Sbjct: 157 LDDLEARVLRTPATPEESFSDDPLRMMRAARFAA-----QLDFDPAPEVVAAMTAMADRI 211 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I+S+ER+ +E+NKLL A++P+ + + + G+ + ++ + L+ Sbjct: 212 GIVSAERVQAELNKLLLAEHPVKGLRLLVDTGLADHVLPELPALRLE 258 >gi|297180111|gb|ADI16334.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured bacterium HF130_01F24] Length = 410 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 27/237 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ + +D D + P + + + K P + T ++ Sbjct: 2 KTYLVGGAVRDRLLGVQTKDRDWVVVGASPSSMAELGYRQVGKDFPVFLHPDT-----KE 56 Query: 87 KYFDITTLRSDLITDGRY-----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 +Y T R + + +KV D + RRD TINA+ D G +ID GG Sbjct: 57 EYALARTERKTGVGHTAFDFNISSKVTLEEDLE----RRDLTINAIAEDHDGNLIDPFGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGL 197 L+D++N+ ++ + +A +ED LR+LR RF+A NI D L++ + L Sbjct: 113 LSDIKNKLLRHVSEA---FIEDPLRVLRVARFYAKLAPFGFNISPDTLKLMSDVSHSSEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 LS+ERIW E N L +P + + G K I + LD L +V + ++ Sbjct: 170 NTLSAERIWQEFNAALATPSPEKFVSTLRKCGALKAILPE-----LDALFRVPQPKE 221 >gi|294630321|ref|ZP_06708881.1| tRNA adenylyltransferase [Streptomyces sp. e14] gi|292833654|gb|EFF92003.1| tRNA adenylyltransferase [Streptomyces sp. e14] Length = 477 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 11/226 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI------- 82 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ Sbjct: 34 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVWDVGIAFGTVGAQKQARVE 93 Query: 83 -ICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYV 139 + R ++TT RS+ R +V + + D +RRDFT+NA+ A + ID Sbjct: 94 GVERCFQIEVTTYRSEAYDRTSRKPEVSYGDSIEQDLVRRDFTVNAMAVALPEKDFIDPH 153 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GGL DL R ++ G +D LR++R RF A + + + + A + + ++I Sbjct: 154 GGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAPEVVTAMTEMAERIEI 212 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 +S+ER+ E+NKL+ + +P + + + G+ + ++ + L++ Sbjct: 213 VSAERVRDELNKLILSDHPRKGLTLLVDTGLADRVLPELPALRLER 258 >gi|239500709|ref|ZP_04660019.1| poly(A) polymerase [Acinetobacter baumannii AB900] Length = 487 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ ++D++++T++ +GD R ED +R+LR RF A K ID Sbjct: 135 YYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFK-IDPAI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + ++ + L+ +S R++ E KL + + + + G++K++F D++ Sbjct: 194 LDIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIR 247 >gi|312888916|ref|ZP_07748477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Mucilaginibacter paludis DSM 18603] gi|311298606|gb|EFQ75714.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Mucilaginibacter paludis DSM 18603] Length = 472 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 15/227 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM---RIFSKTRYKVIPTS 74 I S K E + ++GG VRD +N +DIDI ++ + + ++ +K R +P S Sbjct: 13 ISSAAQKMEVDAYVIGGFVRDLYLNRPSKDIDI--VVVGNGIAFAEQVAAKLR---VPLS 67 Query: 75 I--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL----Y 128 + ++GT + + + R + +V + D RRDFTINAL + Sbjct: 68 VFKNFGTAMLKYQDMEIEFVGARKESYRSESRKPIVENGTLEDDQKRRDFTINALAIALH 127 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 Q G++ID GG+ DL+N+ I+ D +D LRI+R RF + + ID L Sbjct: 128 PKQFGQLIDPFGGITDLQNKLIRTPLDPVETFSDDPLRIMRAVRFASQLNFQ-IDESALA 186 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 A + I+S ERI E+NK++ + P H++N G+ K IF Sbjct: 187 AISTTASRISIVSQERITDELNKIILSPIPSIGFKHLFNTGLLKAIF 233 >gi|169797165|ref|YP_001714958.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii AYE] gi|213156045|ref|YP_002318090.1| poly(A) polymerase [Acinetobacter baumannii AB0057] gi|260556069|ref|ZP_05828288.1| poly(A) polymerase I [Acinetobacter baumannii ATCC 19606] gi|301346231|ref|ZP_07226972.1| poly(A) polymerase I [Acinetobacter baumannii AB056] gi|301510751|ref|ZP_07235988.1| poly(A) polymerase I [Acinetobacter baumannii AB058] gi|301596033|ref|ZP_07241041.1| poly(A) polymerase I [Acinetobacter baumannii AB059] gi|169150092|emb|CAM87986.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii AYE] gi|193076373|gb|ABO11034.2| poly(A) polymerase I (PAP) [Acinetobacter baumannii ATCC 17978] gi|213055205|gb|ACJ40107.1| poly(A) polymerase [Acinetobacter baumannii AB0057] gi|260410124|gb|EEX03423.1| poly(A) polymerase I [Acinetobacter baumannii ATCC 19606] Length = 487 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ ++D++++T++ +GD R ED +R+LR RF A K ID Sbjct: 135 YYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFK-IDPAI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + ++ + L+ +S R++ E KL + + + + G++K++F D++ Sbjct: 194 LDIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIR 247 >gi|332874016|ref|ZP_08441951.1| putative polynucleotide adenylyltransferase [Acinetobacter baumannii 6014059] gi|322506803|gb|ADX02257.1| pcnB [Acinetobacter baumannii 1656-2] gi|323516672|gb|ADX91053.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii TCDC-AB0715] gi|332737757|gb|EGJ68649.1| putative polynucleotide adenylyltransferase [Acinetobacter baumannii 6014059] Length = 465 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 120/229 (52%), Gaps = 11/229 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + R +++ + Sbjct: 1 MIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGR-RCRIV--GRRF 57 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALY-ADQ 131 + ++ ++ T R+ A + RD W + D RRDF+IN LY + Sbjct: 58 ELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPR 117 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VAS 190 +G V+D+ ++D++++T++ +GD R ED +R+LR RF A K IDS L + Sbjct: 118 KGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFK-IDSAILDIFD 176 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++ + L+ +S R++ E KL + + + + G++K++F D++ Sbjct: 177 VEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIR 225 >gi|146329312|ref|YP_001209046.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A] gi|146232782|gb|ABQ13760.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A] Length = 430 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 16/239 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--- 68 D I I L++ ++ +VGG +RD+L+ +D DIAT P+ + +F R Sbjct: 25 DRRAIAICRQLHEAGYEAYLVGGCLRDTLLQQPPKDFDIATNARPEEIAALFRNCRLIGR 84 Query: 69 KVIPTSISYGT--IKIICRKKYFD---ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + + YG I++ + D T ++ D Y + + D LRRDF Sbjct: 85 RFRLAHLHYGRDIIEVATFRASADEQVKTDADGHVLEDNHYGTM------EEDVLRRDFI 138 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 IN+LY D Q G +IDY+ L D+R R I+ IG R +ED +R+LR RF A + Sbjct: 139 INSLYYDVQTGVLIDYLDALADIRARQIRLIGTPSARYIEDPVRMLRAARFAAKLS-MPL 197 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ A ++ L+ + + R++ E+ KL + + + + +F +F DV I Sbjct: 198 EAQTQQAIASCRQELRAVPAARLFDEVQKLFMSGYGEKSYEILRSFELFAMLFPDVDRI 256 >gi|326561273|gb|EGE11632.1| poly(A) polymerase [Moraxella catarrhalis 46P47B1] Length = 594 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF R ++I Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFG-GRCRII--G 91 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++ ++ T R+ DG + D + D RRDF+INALY Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLG 202 >gi|303256720|ref|ZP_07342734.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47] gi|302860211|gb|EFL83288.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47] Length = 468 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 13/171 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 I++ L K+ IVGGAVRD L+ +D D+AT P+ V ++ + R+++ Sbjct: 29 ISVCQKLQDAGYKAFIVGGAVRDLLIGAKPKDFDVATDATPEEVKKVTRRAIIIGRRFRL 88 Query: 71 IPTSISYGTIKIICRKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + TI++ + + +T +IT+ VF ++ D+ RRDFT+NA+Y Sbjct: 89 VHVNKGAETIEVATFRGFAKQGVTKDEDGVITNDN----VFGEQYE-DAARRDFTVNAMY 143 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D G + DY GL+D+R R I+ IGD R ED +RILR R A G Sbjct: 144 FDPISGDLYDYHHGLDDIRERKIRMIGDPATRYREDPVRILRAIRIAAKLG 194 >gi|237653425|ref|YP_002889739.1| poly(A) polymerase [Thauera sp. MZ1T] gi|237624672|gb|ACR01362.1| poly(A) polymerase [Thauera sp. MZ1T] Length = 456 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 9/203 (4%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 + ++L + K+ +VGGAVRD L+ +D D+AT+ P+ V F ++ R+K++ Sbjct: 42 KVCAVLQEKGFKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRAAFRRSRIIGRRFKIV 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 TI++ + D + +D GR + + + D+ RRDFT+NALY D Sbjct: 102 HVMSGPETIEVSTFRASQDAESADTD--EHGRVLRDNVFGNQQEDATRRDFTVNALYYDP 159 Query: 132 QGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++DY G+ D++ +T++ IGD R ED +R+LR R A G ID Sbjct: 160 GTETIVDYHHGVADIQQKTLRMIGDPRTRYREDPVRMLRAVRLAAKLG-LTIDPAARQPI 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + L+ + + R++ E+ KLL Sbjct: 219 REMGPLLENVPAARLFDEMLKLL 241 >gi|213423730|ref|ZP_03356710.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 262 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 DFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKL 191 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A N + +F+ +F Sbjct: 192 NMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLF 248 >gi|256381055|ref|YP_003104715.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Actinosynnema mirum DSM 43827] gi|255925358|gb|ACU40869.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Actinosynnema mirum DSM 43827] Length = 502 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 10/221 (4%) Query: 31 IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGG+VRD+L+ S D+D T P+++ R+ S + T I++GT+ + Sbjct: 26 LVGGSVRDALLGRSSGGDFDLDFTTDARPEQIQRLLSGWADGLWDTGIAFGTVGATKHGR 85 Query: 88 YFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLND 144 +ITT R+D DG R +V F + D +RRDFT+NA+ D + +ID GG Sbjct: 86 TVEITTFRADSY-DGVTRNPEVTFGDTVEGDLVRRDFTVNAMAFDVAARELIDPTGGREA 144 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSE 203 L + +D LR+LR RF + G +D +V ++ A G L+ ++ E Sbjct: 145 LAAMVLDTPATPQQSFGDDPLRMLRAARFVSQIG--FTPADRVVEAMTAMAGELERITPE 202 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 R+ E++KLL +P + + G+ + ++ + L+ Sbjct: 203 RVQQELSKLLCGAHPRRGVELFESTGLAAVVLPELPAMRLE 243 >gi|326572182|gb|EGE22178.1| poly(A) polymerase [Moraxella catarrhalis BC7] Length = 594 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF R ++I Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFG-GRCRII--G 91 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++ ++ T R+ DG + D + D RRDF+INALY Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLG 202 >gi|296455134|ref|YP_003662278.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp. longum JDM301] gi|296184566|gb|ADH01448.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp. longum JDM301] Length = 471 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D ++ P++ I + + +GT+ + R+ Sbjct: 24 ALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFWDMGRKFGTLGAMRRRPD 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYV 139 ++TT RSD TD R +V + + D RRDFT+NA+ D Q +D Sbjct: 84 GTEVKVEVTTYRSDTYDTDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLQ--FVDPF 141 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG +DL ++ D +D LR++R RF A G + I D A + L I Sbjct: 142 GGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAPDAAEAITSMRDRLDI 200 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P + + G+ +F ++ + L Q+ + + VFE Sbjct: 201 VSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL-QIDEHHRHKDVFEHT 259 Query: 260 IDSLLRFIVLISWQD 274 + L R I L + D Sbjct: 260 MIVLERAIALETGPD 274 >gi|118471508|ref|YP_891120.1| tRNA adenylyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118172795|gb|ABK73691.1| tRNA adenylyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 480 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 8/220 (3%) Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGG+VRD+L+ + D+D T P+++ + + T I +GTI + Sbjct: 41 LVGGSVRDALLGRLTENSDLDFTTDARPEQMQKFLRGWSDALWDTGIEFGTIGVGKGDDR 100 Query: 89 FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 +ITT R+D R V F + D +RRDFTINA+ AD G+ D +GGL Sbjct: 101 LEITTFRADSYDQVSRNPTVEFGDNLGDDLVRRDFTINAMAVRITADGPGEFHDPLGGLA 160 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 R++ + +D LR+LR RF + G ++ L A I+ L+ +++E Sbjct: 161 AARDKVLDTPSAPEVSFGDDPLRMLRAARFVSQLG-FSVAPRVLEALIEMAPQLERITAE 219 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 R+ +E++KLL +P+ I M G+ + +V E+ + Sbjct: 220 RVAAELDKLLLGADPVAGIDLMVQTGMGAVVLPEVGEMRM 259 >gi|331700374|ref|YP_004336613.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudonocardia dioxanivorans CB1190] gi|326955063|gb|AEA28760.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudonocardia dioxanivorans CB1190] Length = 545 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 12/223 (5%) Query: 31 IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGG+VRD+L+ D+D T P+R+ + + V T I +GTI Sbjct: 103 LVGGSVRDALLGRGAAAGGDLDFTTDARPERIQELLAGWADTVWDTGIDFGTIGARRGDH 162 Query: 88 YFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL-----YADQQGKVIDYVGG 141 +ITT R+D GR V F + D +RRDFT+NA+ D Q + +D GG Sbjct: 163 VLEITTFRADAYDRVGRNPIVRFGDSIEGDLVRRDFTVNAMAVEVHAPDGQRRFVDPHGG 222 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 L L T+ +D LR+LR RF + G + +V ++ A G L + Sbjct: 223 LAALAAGTLDTPATPQESFADDPLRMLRGARFVSQLG--FAPAPRVVEAMTAMAGELARI 280 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + ER+ +E +KL+ +P AI M + G+ + + +V + L Sbjct: 281 TKERVQAEFSKLILGAHPRRAIELMVDTGLAELVVPEVPAMRL 323 >gi|296114047|ref|YP_003627985.1| poly(A) polymerase [Moraxella catarrhalis RH4] gi|295921741|gb|ADG62092.1| poly(A) polymerase [Moraxella catarrhalis RH4] Length = 594 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ ++ L K + IVGG VRDSL+ L+ +D D T P + IF R ++I Sbjct: 35 IVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFG-GRCRII--G 91 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++ ++ T R+ DG + D + D RRDF+INALY Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNVWGDIEQDFARRDFSINALY 151 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G+V+D+ G L D+ + T++ +GDA RI ED +R+LR RF A G Sbjct: 152 YQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLG 202 >gi|269138047|ref|YP_003294747.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda EIB202] gi|267983707|gb|ACY83536.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda EIB202] gi|304558091|gb|ADM40755.1| Poly(A) polymerase [Edwardsiella tarda FL6-60] Length = 456 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 14/234 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 ENALKVLYRLNKSGYEAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRNCRLVGRR 93 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTI 124 +++ I++ + + + ++ G+ ++ + + D+ RRDFTI Sbjct: 94 FRLAHVMFGPEIIEVATFRGHHEHADESKNIAQQGKNGMLLRDNVYGNIEEDAQRRDFTI 153 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 N+LY AD V DY GGLNDLR I+ IGD R ED +R+LR RF A + + Sbjct: 154 NSLYYSVAD--FSVRDYTGGLNDLRAGQIRLIGDPETRYREDPVRMLRAVRFAAKL-QMS 210 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + L+ + + R++ E KLL+A + + +F+ +F Sbjct: 211 ISPETAAPIAHLASLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLFQPLF 264 >gi|285017990|ref|YP_003375701.1| poly(a) polymerase [Xanthomonas albilineans GPE PC73] gi|283473208|emb|CBA15713.1| probable poly(a) polymerase protein [Xanthomonas albilineans] Length = 481 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 16/233 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L + + +VGGAVRD L+ +D D+AT P++V ++F R Sbjct: 55 PNALRVLYRLREAGFGAYLVGGAVRDLLVQWQPKDFDVATDATPEQVKQLFRNCRL---- 110 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTI 124 + ++ ++ ++ T R+++ + +GR + + D+LRRDFT Sbjct: 111 IGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGSIEDDALRRDFTC 170 Query: 125 NALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY A + V DY GG D++ R +K IGD R ED +R+LR R A G + ID Sbjct: 171 NALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQ-ID 229 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + G I G L + R++ E+ KL + + + + + G+ +F Sbjct: 230 A-GTAEPIPRLAGLLAEAAPARLFEEVLKLFLSGHGVASFEGLERHGLLAALF 281 >gi|256821580|ref|YP_003145543.1| poly(A) polymerase [Kangiella koreensis DSM 16069] gi|256795119|gb|ACV25775.1| poly(A) polymerase [Kangiella koreensis DSM 16069] Length = 456 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 12/229 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L+ +S +VGG VRD L+ L +D DIAT P+++ +F R Sbjct: 44 NALKVLYRLSNAGYESFLVGGGVRDILLGLHPKDFDIATNATPEQIKELFRNCRI----I 99 Query: 74 SISYGTIKIICRKKYFDITTLRS---DLITDGRYAKVVFTR---DWKADSLRRDFTINAL 127 + I+ + ++ T R+ D I + ++ D + D++RRDFTINAL Sbjct: 100 GRRFRLAHILFGRDVIEVATFRAHCDDNIQQAKEGMILRDNVYGDIEEDAIRRDFTINAL 159 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y + + V D+ GL DLR R ++ IGD R ED +R+LR R I+ + Sbjct: 160 YYNIKDFSVHDFCDGLADLRKRQLRMIGDPETRYREDPVRMLRAVRLACKLN-LTIEPNT 218 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 L + L+ + + R+W E KL A + G+F +F Sbjct: 219 LKPVAELSHFLEQVPAARLWEEYRKLFLAGAAKLTFQKLREYGLFHALF 267 >gi|319410202|emb|CBY90540.1| K00970 poly(A) polymerase [Neisseria meningitidis WUE 2594] Length = 478 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGA+RD L+ + +D D+AT +P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----VGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IGDA R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|309379411|emb|CBX21978.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 453 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 16/205 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV 102 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + + D++RRDFT NALY D Sbjct: 103 HVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSI------EEDAMRRDFTCNALYYD 156 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 ++ +++D+ G+ D+ R + IGDA R ED +RILR R G E + ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLGFELSEETAAPI 216 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 217 AESICR--LKHEPVARLFDEIMKLL 239 >gi|283782575|ref|YP_003373329.1| tRNA adenylyltransferase [Gardnerella vaginalis 409-05] gi|298253265|ref|ZP_06977057.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella vaginalis 5-1] gi|283441848|gb|ADB14314.1| tRNA adenylyltransferase [Gardnerella vaginalis 409-05] gi|297532660|gb|EFH71546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella vaginalis 5-1] Length = 475 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D T+ P+ I + + +GT+ + R+ Sbjct: 26 ALVGGPVRDMLLHRVSHDLDFCTSARPEEFEPILRRWGHDGFWDMGRKFGTLGAMRRRAD 85 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYV 139 +ITT RSD+ D R +V + + D RRDFT+NA+ D Q +D Sbjct: 86 GTEVKVEITTYRSDVYDPDSRKPEVQYGDTLEGDLSRRDFTVNAMALRVPDLQ--FVDPF 143 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG +DL ++ D +D LR++R RF A G +I+++ A + L I Sbjct: 144 GGASDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FSIEANTAEAIVDMADRLDI 202 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ERI EI K+L + P + + GI + + ++ + L ++ + + VFE Sbjct: 203 VSAERIRDEITKMLLSDRPRKGLEALVESGIAQRVLPEIPALQL-EIDEHHRHKDVFEHT 261 Query: 260 IDSLLRFIVLISWQD 274 + L R I L + Q+ Sbjct: 262 MMVLERAIALETDQE 276 >gi|50086075|ref|YP_047585.1| poly(A) polymerase I (PAP) [Acinetobacter sp. ADP1] gi|49532051|emb|CAG69763.1| poly(A) polymerase I (PAP) [Acinetobacter sp. ADP1] Length = 485 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 15/236 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + +++++ LNK ++ IVGG VRD ++ L+ +D D T P +V +F + Sbjct: 18 ASILDVIDSLNKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPAQVKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ ++D++ RT++ +GD R ED +R+LR RF A N D D Sbjct: 135 YYQPRKGIVLDFCDAVSDVKKRTLRLLGDPAQRFEEDPVRMLRALRFAAKL---NFDIDP 191 Query: 187 LVASI---KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + I + + L+ +S R++ E KL + + + I++++F DV+ Sbjct: 192 EILKIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLSRVLPMLIEFDIWRQLFADVK 247 >gi|326565160|gb|EGE15351.1| poly(A) polymerase [Moraxella catarrhalis 103P14B1] gi|326574643|gb|EGE24579.1| poly(A) polymerase [Moraxella catarrhalis 101P30B1] Length = 599 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ I+ L K + IVGG VRDSL+ L+ +D D T P + IF R ++I Sbjct: 35 IVEIIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFG-GRCRII--G 91 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRD--W---KADSLRRDFTINALY 128 + + ++ ++ T R+ D + + TRD W + D RRDF+INALY Sbjct: 92 RRFQLAHVYSGREMIEVATFRAPPKDDTHTTEDGMITRDNVWGDIEQDFARRDFSINALY 151 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G+V+D+ L D+ + T++ +GDA RI ED +R+LR RF A G Sbjct: 152 YQPIKGEVLDFCDALKDIDSHTLRLLGDAKVRIEEDPVRLLRALRFKAKLG 202 >gi|307699928|ref|ZP_07636979.1| tRNA adenylyltransferase [Mobiluncus mulieris FB024-16] gi|307614966|gb|EFN94184.1| tRNA adenylyltransferase [Mobiluncus mulieris FB024-16] Length = 486 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 3/214 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ + D+D+ T+ P+ + + V ++GTI F Sbjct: 35 ALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWDVGRNFGTIGARKGDAIF 94 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 +ITT R D D R V F + D RRDFT+NA+ + ++D GG DL Sbjct: 95 EITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRLPEMTLVDPTGGERDLEQ 154 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + ++ +D LRI+R RF A G +ID L A ++ L+I+S ERI + Sbjct: 155 QMLRTPISPEESFNDDPLRIMRAARFAAQLG-FDIDYSVLTAMQDMRERLQIVSRERIQA 213 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E ++LL + P + M + ++ ++ E+ Sbjct: 214 EFSRLLVSPWPRRGLELMVYTDVAAQVVPELMEL 247 >gi|304387847|ref|ZP_07370021.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091] gi|304338112|gb|EFM04248.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091] Length = 502 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 67 NVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 122 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 123 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 182 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IGDA R ED +RILR R + G E + ++ +A Sbjct: 183 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGFELSEETAAPIAE 242 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 243 SICR--LKHEPVARLFDEIMKLL 263 >gi|258513929|ref|YP_003190151.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfotomaculum acetoxidans DSM 771] gi|257777634|gb|ACV61528.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfotomaculum acetoxidans DSM 771] Length = 584 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 118/245 (48%), Gaps = 15/245 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ +++ L + ++ +VGG VRD LM D DIAT+ ++ +F KT +P Sbjct: 7 VLKVINKLKENGKQAFLVGGCVRDLLMGSEPADYDIATSAAAQEILSLFGKT----VPIG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTI ++ +++T + Y + + D RDFTINA+ D +G Sbjct: 63 ERHGTISVLLDGFTVEVSTFKG-------YVREEGPGGLEKDLSLRDFTINAMAIDGEGG 115 Query: 135 VIDYVGGLNDLRNRTIKFIG-DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 D GG DL + I+ G + R +ED LR++R RF +G ++ D A K Sbjct: 116 FYDPFGGQKDLEQKIIRSPGNEPEQRFIEDPLRMMRAIRFCCSFG-FSLHPDTNKAIAKN 174 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-VQEISLDQLSQVIEA 252 ++ + ER+ E+N++L + P I + G+ + + + + ++ DQ + + Sbjct: 175 HALIQRSAPERVREELNRILISDLPSLGIRLLAETGLLRHVMPEAISLVNFDQRDKP-HS 233 Query: 253 EQVFE 257 + VFE Sbjct: 234 KDVFE 238 >gi|255320863|ref|ZP_05362037.1| poly(A) polymerase [Acinetobacter radioresistens SK82] gi|262380244|ref|ZP_06073399.1| poly(A) polymerase I [Acinetobacter radioresistens SH164] gi|255302032|gb|EET81275.1| poly(A) polymerase [Acinetobacter radioresistens SK82] gi|262298438|gb|EEY86352.1| poly(A) polymerase I [Acinetobacter radioresistens SH164] Length = 483 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + Sbjct: 18 SSILDVIESLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKDVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+INAL Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGSIEQDFSRRDFSINAL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y +G V+D+ + D++N+T++ +GD R ED +R+LR RF A K ID Sbjct: 135 YYQPHKGIVLDFCDAVQDIKNKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFK-IDPAI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + + + + L+ +S R++ E KL + + + + I+K++F D++ Sbjct: 194 LKIFTAELAQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFDIWKQLFADIR 247 >gi|256829174|ref|YP_003157902.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028] gi|256578350|gb|ACU89486.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028] Length = 424 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 18/246 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V + H L + L+ KG + +VGG VRD L+ + +D D++T P ++ +IF Sbjct: 13 VSRQNIHPDALKVMYRLVRKGF-TAYLVGGGVRDLLLGRTPKDFDVSTNATPSQIKKIFQ 71 Query: 65 K-----TRYKVIPTSISYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKA 115 R+++ I+ ++ D D ++ D Y + Sbjct: 72 NYFLIGRRFRLAHIRFDDHVIETSTFRRCPDQEEENGDEDLYMLRDNCYGTP------EE 125 Query: 116 DSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+LRRDFTIN L Y ++ +ID+VGGL+D+ NR I+ IGD + R ED +R++R RF Sbjct: 126 DALRRDFTINGLFYEVERFSIIDHVGGLSDIENRLIRCIGDPNIRFREDPVRMIRAVRFA 185 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A + +I+ A ++ + + S R++ E+ KL + A+ +Y G+ + Sbjct: 186 ARL-DFHIEPATYNAIMRHHEEILKASPPRVFEELQKLFAYGSGEKAVRLLYKTGLLHNL 244 Query: 235 FLDVQE 240 ++ + Sbjct: 245 LPEIAD 250 >gi|330443816|ref|YP_004376802.1| poly A polymerase [Chlamydophila pecorum E58] gi|328806926|gb|AEB41099.1| poly A polymerase [Chlamydophila pecorum E58] Length = 414 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 82/311 (26%), Positives = 139/311 (44%), Gaps = 31/311 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K + IVGG +RD L+ + +D DI+T+ P+ + +F I Sbjct: 32 LSVVKALRKAGYTAYIVGGCIRDLLLGTTPKDFDISTSAKPEEIKALFKN----CILVGK 87 Query: 76 SYGTIKIICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133 + I + +++T RS D TD K + D LRRDFTIN L+ D + Sbjct: 88 RFRLAHIRFANQIIEVSTFRSGDTETDALITKDNLWGTPEEDVLRRDFTINGLFYDPAEE 147 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +IDY GG++DL N ++ IGD R +D +R+LR + + + + + A + Sbjct: 148 AIIDYTGGMSDLSNHYLRTIGDPFMRFKQDPVRMLRLLKILSRF-QFTVAPQTQEALLAC 206 Query: 194 KKGLKILSSERIWSEINKLLEA-----------KNPLNAIVHMYNGGIFK---------E 233 + L S R++ E+ K+L + +N L I+ Y F+ Sbjct: 207 HRELTKSSQARVFEELIKMLNSGVSARFFRLLKENHLLEILFPYMDKAFRLNKVLEEQTY 266 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293 +L+V + + S V + QVF + + F V + K LS++ F I+ Sbjct: 267 QYLEVLDYKIQSKSMVYDRHQVFAVFLYPTVNFNVRYKY-SKYPNLSLSAIFDF---IKN 322 Query: 294 FLISFFNCNFN 304 FL FF +F Sbjct: 323 FLEKFFADSFT 333 >gi|183597873|ref|ZP_02959366.1| hypothetical protein PROSTU_01207 [Providencia stuartii ATCC 25827] gi|188022633|gb|EDU60673.1| hypothetical protein PROSTU_01207 [Providencia stuartii ATCC 25827] Length = 415 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 26/203 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V D D + P+ ++ + K P + T Sbjct: 3 KVYLVGGAVRDELLGLPVSDRDYVVVGSTPETMLAQGFQQVGKDFPVFLHPQT------- 55 Query: 87 KYFDITTLRSDLITDGRY-------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 + + R++ T Y A V D D LRRD TINA+ D QG++ D Sbjct: 56 -HEEYALARTERKTGAGYTGFSCYSAPDVTIED---DLLRRDLTINAIAKDDQGQLTDPY 111 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKK 195 G++DL+ R ++ + +A ED LR+LR RF A Y E+ ++ L+ ++ A Sbjct: 112 NGVDDLKARVLRHVSEA---FAEDPLRVLRVARFAARYAEQGFHIAPETLSLMQTMTASG 168 Query: 196 GLKILSSERIWSEINKLLEAKNP 218 L L++ER+W+E K L++K+P Sbjct: 169 ELTHLTAERVWAETEKALKSKSP 191 >gi|54297450|ref|YP_123819.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella pneumophila str. Paris] gi|53751235|emb|CAH12646.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella pneumophila str. Paris] Length = 423 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG+VRD L++ + +D DIAT P+ V +F R + + I+ ++ Sbjct: 34 QAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----IGRRFKLVHILFHRE 89 Query: 88 YFDITTLRSDLITDGRY---AKVVFTRD-----WKADSLRRDFTINALYAD-QQGKVIDY 138 ++ T R +D + + + RD D+ RRDFTIN+LY + +ID+ Sbjct: 90 IIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTINSLYYNISDSSIIDF 149 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G+ D++ + I+ IGD R ED +R+LR RF A + N+ + K + Sbjct: 150 TSGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSPETKAPFPKISHLIT 208 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +SS R++ EI KL + + + G+F +F Sbjct: 209 HVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245 >gi|149927694|ref|ZP_01915946.1| probable polynucleotide adenylyltransferase protein [Limnobacter sp. MED105] gi|149823520|gb|EDM82750.1| probable polynucleotide adenylyltransferase protein [Limnobacter sp. MED105] Length = 485 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 20/233 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + I + L K+ +VGGAVRD L+ + +D D+AT P++ R+F + R+ Sbjct: 62 NAIRVCETLQSKGYKAFVVGGAVRDLLLGMRPKDFDVATDASPEQTQRLFRRARVIGRRF 121 Query: 69 KVI-----PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 +++ P +I T + + R ++ D + + D+ RRDFT Sbjct: 122 QIVHVMFGPETIETSTFRALASASNEKDEHGR--VLRDNEFGRQ------DEDASRRDFT 173 Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NA+Y D + + DY G+ DLR+R ++ IG+ R ED +R+LR RF A + I Sbjct: 174 VNAMYYDPSTETVWDYHHGMEDLRSRVLRMIGEPSLRYREDPVRMLRVVRFAAKLNFE-I 232 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + L+ + + R++ E+ KLL + + + + + G+ +F Sbjct: 233 EPATYAPIAELSDLLRNVPASRLFDEMLKLLMSGSAMACLKGLRKAGLHHGVF 285 >gi|302535590|ref|ZP_07287932.1| tRNA adenylyltransferase [Streptomyces sp. C] gi|302444485|gb|EFL16301.1| tRNA adenylyltransferase [Streptomyces sp. C] Length = 483 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 114/222 (51%), Gaps = 11/222 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I + I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEAVLKIMRPWADSLWDVGIAFGTVGAQRDGFQI 104 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ A + + +D GGL DL Sbjct: 105 EVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMALALPEQEFVDPHGGLEDLAA 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKA-KKGLKILSSE 203 ++ G +D LR+LR RF A +D + +V+++KA ++I+S+E Sbjct: 165 GVLRTPGTPEDSFSDDPLRMLRAARFAAQ-----LDFEVAPEVVSAMKAMSDRIEIVSAE 219 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 R+ E+NKLL + +P + + + G+ + ++ + L++ Sbjct: 220 RVQGELNKLLLSAHPRKGLGLLVDTGLADRVLPELPALRLER 261 >gi|21222303|ref|NP_628082.1| RNA nucleotidyltransferase [Streptomyces coelicolor A3(2)] gi|256786596|ref|ZP_05525027.1| RNA nucleotidyltransferase [Streptomyces lividans TK24] gi|289770488|ref|ZP_06529866.1| tRNA adenylyltransferase [Streptomyces lividans TK24] gi|4808392|emb|CAB42723.1| putative RNA nucleotidyltransferase [Streptomyces coelicolor A3(2)] gi|289700687|gb|EFD68116.1| tRNA adenylyltransferase [Streptomyces lividans TK24] Length = 483 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 11/222 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P V++I V I++GT+ Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIMRPWADAVWEVGIAFGTVGGQKDGWQI 104 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRN 147 ++TT RS+ R +V + + D +RRDFT+NA+ KV ID GGL+DL Sbjct: 105 EVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKVFIDPHGGLDDLAA 164 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK----ILSSE 203 R ++ G +D LR++R RF A +D + +KA + I+S+E Sbjct: 165 RVLRTPGTPEDSFSDDPLRMMRAARFAA-----QLDFEVAPEVVKAMHDMAGRIDIVSAE 219 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 R+ E+NKL+ + +P + + G+ + + ++ + L++ Sbjct: 220 RVRDELNKLILSPHPRKGLSLLVETGLAERVLPELPALRLER 261 >gi|296167162|ref|ZP_06849569.1| polyA polymerase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897484|gb|EFG77083.1| polyA polymerase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 478 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 8/225 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P++V I + + T I +GT+ + + Sbjct: 39 LVGGSVRDAVLGRLSPDLDFTTDARPEQVQEILRRWADNLWDTGIEFGTVGVGKGGNRLE 98 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R +V F + D +RRDFT NA+ + G+ +D +GGL L Sbjct: 99 ITTFRADAYDRVSRKPEVQFGERLEDDLVRRDFTANAMAVRITPEGPGEFLDPLGGLAAL 158 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R R + +D LR+LR RF A G + A + L +S+ER+ Sbjct: 159 RQRVLDTPAAPSVSFGDDPLRMLRAARFVAQLG-FAVAPRVREAIEEMAPELARISAERV 217 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 +E++KLL +P++ I + G+ + + +V ++++D+ Q Sbjct: 218 AAELDKLLLGDDPVSGIDLLVQTGMGEVVLPEVGGMQMAIDEHHQ 262 >gi|229822681|ref|YP_002884207.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Beutenbergia cavernae DSM 12333] gi|229568594|gb|ACQ82445.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Beutenbergia cavernae DSM 12333] Length = 483 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 143/345 (41%), Gaps = 34/345 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +D+ + L G + +VGG VRD+ + D+D AT+ P++ I ++ V Sbjct: 25 ADVDPLGDLFAAGGHEIALVGGPVRDAFLGRGSSDLDFATSARPEQTEAILARWGDAVWD 84 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQ 131 ++GTI ++TT R++ G R V + D RRDFTINA+ Sbjct: 85 VGRAFGTIGAGRGDVVVEVTTYRTEAYDAGSRKPAVEYGDTLDGDLSRRDFTINAMAVRL 144 Query: 132 QG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +D GL+DL ++ A +D LR++R RF A ++ D + A Sbjct: 145 PDLTFVDPHHGLDDLAAHVLRTPVSAEQSFDDDPLRMMRAARFAAQL-RVDVAPDVMAAM 203 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-------------- 236 L I+S+ER+ +E+ KLL A P + M G+ + Sbjct: 204 TAMAGRLAIVSAERVQAELTKLLLAPAPRRGLELMVETGLADVVLPELPAMKLEIDEHHR 263 Query: 237 --DVQEISLDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 DV E SL L Q I+ E + + D +LR L+ + A + + P Sbjct: 264 HKDVYEHSLTVLDQAIDLETGPDGPVPAPDLVLRLAALL-----HDVGKPATRRNEP--- 315 Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 +SF + L+ K+L L DK IA + +ALH Sbjct: 316 -GGRVSFHHHEVVGAKLA---RKRLAALRYDKATIADVTTLIALH 356 >gi|260596566|ref|YP_003209137.1| poly(A) polymerase I [Cronobacter turicensis z3032] gi|260215743|emb|CBA28132.1| Poly(A) polymerase [Cronobacter turicensis z3032] Length = 479 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 59 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 114 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 115 VGRRFRLAHVMFGPEIIEVATFRGHHEESESDRATSQRGQNGMLLRDNIFGSIEEDAQRR 174 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGGLNDL I+ IGD R ED +R+LR RF A + Sbjct: 175 DFTINSLYYSVADFTVRDYVGGLNDLNEGIIRLIGDPETRYREDPVRMLRAVRFAARL-D 233 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 I + + L + R++ E KLL+A Sbjct: 234 MRISPETGEPIPRLATLLNDVPPARLFEESLKLLQA 269 >gi|134103797|ref|YP_001109458.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338] gi|291005745|ref|ZP_06563718.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338] gi|133916420|emb|CAM06533.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338] Length = 499 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 110/219 (50%), Gaps = 9/219 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P++V + + V T I +GT+ + Sbjct: 53 LVGGSVRDALLGRLGTDLDFTTDARPEQVRVLLDEWAETVWDTGIQFGTLGAYRHGTTVE 112 Query: 91 ITTLRSDL---ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLR 146 ITT R+D +T R +V F + D LRRDFT+NA+ + + +D GG+ DL Sbjct: 113 ITTFRADTYDRVT--RNPEVAFGDTIEGDLLRRDFTVNAMAIELPKRAFVDLHGGMADLV 170 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERI 205 R + +D LR+LR RF + G + +V +++ G ++ ++ ER+ Sbjct: 171 ARRLDTPATPQESFADDPLRMLRAARFVSQLG--FTPAPRVVDAMREMAGEIRRITPERV 228 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +E++KLL ++P + + G+ + + ++ + L+ Sbjct: 229 QTELSKLLCGRHPREGVELLVETGLAEHVLPELPAMKLE 267 >gi|325132016|gb|EGC54714.1| poly(A) polymerase [Neisseria meningitidis M6190] gi|325137770|gb|EGC60345.1| poly(A) polymerase [Neisseria meningitidis ES14902] Length = 453 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IGDA R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|260582187|ref|ZP_05849981.1| tRNA nucleotidyltransferase [Haemophilus influenzae NT127] gi|260094819|gb|EEW78713.1| tRNA nucleotidyltransferase [Haemophilus influenzae NT127] Length = 416 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G T + D +RRD TINA+ + GK+ID GG DL Sbjct: 57 EYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGKIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMAELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E K L KNP ++ G +F ++ Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|297243119|ref|ZP_06927057.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella vaginalis AMD] gi|296889330|gb|EFH28064.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella vaginalis AMD] Length = 475 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 10/253 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D T+ P+ I + + +GT+ + R+ Sbjct: 26 ALVGGPVRDMLLHRVSHDLDFCTSARPEEFEPILRRWGHDGFWDMGRKFGTLGAMRRRAD 85 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141 +ITT RSD+ D R +V + + D RRDFT+NA+ + +D GG Sbjct: 86 GTEVKVEITTYRSDVYDPDSRKPEVQYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPFGG 145 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 +DL ++ D +D LR++R RF A G +I+++ A + L I+S Sbjct: 146 ASDLAKGVLRTPVDPRQSFDDDPLRMMRAIRFVAQLG-FSIEANTAEAIVDMADRLDIVS 204 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ERI EI K+L + P + + GI + + ++ + L ++ + + VFE + Sbjct: 205 AERIRDEITKMLLSDRPRKGLEALVESGIAQRVLPEIPALQL-EIDEHHRHKDVFEHTMM 263 Query: 262 SLLRFIVLISWQD 274 L R I L + Q+ Sbjct: 264 VLERAIALETDQE 276 >gi|169634350|ref|YP_001708086.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii SDF] gi|169153142|emb|CAP02225.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii] Length = 487 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 118/234 (50%), Gaps = 11/234 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S +++++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + Sbjct: 18 SSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRI--- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINAL 127 + + ++ ++ T R+ A + RD W + D RRDF+IN L Sbjct: 75 IGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTL 134 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++G V+D+ ++D++++T++ +GD R ED +R+LR RF A K ID Sbjct: 135 YYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFK-IDPAI 193 Query: 187 L-VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L + ++ + L+ +S R++ E KL + + + G++K++F D++ Sbjct: 194 LDIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIAFGVWKQLFADIR 247 >gi|88704599|ref|ZP_01102312.1| tRNA nucleotidyltransferase [Congregibacter litoralis KT71] gi|88700920|gb|EAQ98026.1| tRNA nucleotidyltransferase [Congregibacter litoralis KT71] Length = 443 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 22/221 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IK 81 K+ +VGGAVRD L++ V++ D + +PD ++++ K P + T + Sbjct: 2 KTYLVGGAVRDELLDYPVKERDWVVVGAMPDELLKLGFTQVGKDFPVFLHPQTKEEHALA 61 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 RKK T + A V D + RRD TINA+ D G +ID GG Sbjct: 62 RTERKKGHGYTGFETHYD-----ATVTLEEDLQ----RRDLTINAIARDGDGSLIDPYGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL NR ++ + DA +ED LR+LR RF A Y ++ L++ I A+ L Sbjct: 113 SADLTNRILRHVSDA---FIEDPLRVLRVARFAARYAHLGFTVAKETLELMSEIVAQGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + L +ERIW E + L ++P I + + G K + +V Sbjct: 170 QYLPAERIWVETERALREQDPQVFIEVLRDCGALKALLPEV 210 >gi|315179129|gb|ADT86043.1| tRNA nucleotidyltransferase [Vibrio furnissii NCTC 11218] Length = 404 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 111/239 (46%), Gaps = 32/239 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V D D + PD +++ + K P + T R+++ Sbjct: 5 LVGGAVRDQLLQLPVYDKDWVVVGSSPDAMLQAGFQAVGKDFPVFLHPKT-----REEH- 58 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T Y F D +AD RRD TINA+ DQ G +ID GG DL Sbjct: 59 --ALARTERKTGAGYTGFACHFAPDVTLEADLQRRDLTINAMAQDQDGTLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILS 201 +R ++ + +A +ED LR+LR RF AH G D L+ I A L L+ Sbjct: 117 HDRVLRHVSEA---FVEDPLRVLRVARFAAKLAHLGFSVADETLALMQRISASGELAHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQVIEAEQVFEW 258 ER+W E +K L ++P IF ++ D +I L +L ++ Q +W Sbjct: 174 PERVWQEWHKSLSTQSP----------HIFLQVLRDCGALQIVLPELDRLFGVPQPEKW 222 >gi|294102644|ref|YP_003554502.1| Polynucleotide adenylyltransferase region [Aminobacterium colombiense DSM 12261] gi|293617624|gb|ADE57778.1| Polynucleotide adenylyltransferase region [Aminobacterium colombiense DSM 12261] Length = 404 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 127/267 (47%), Gaps = 30/267 (11%) Query: 15 LINILSLL---NKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYKV 70 L N L LL K K+ +VGGAVRD L+ SV D+D+A + + R+F V Sbjct: 3 LFNALELLRFFEKEGIKAWVVGGAVRDYLLGRQSVSDVDLAVSGGEKEIQRVFPGA---V 59 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 I T I ++ FD+ LR+ + + D RRDFT+NA+ D Sbjct: 60 IVGKAQKRTAVISFNREAFDVFPLRNKPVEE--------------DLARRDFTVNAMALD 105 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +G + D G +DLR ++F G+ HR+ +D +R LR RF + +G + ID D +A Sbjct: 106 SRGHIYDPFDGFSDLRKGILRFNGNPLHRLKDDPIRALRLCRFASTHGLR-IDGDSSLAV 164 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + +S ERI E+ + + L + + G+ F ++++ Q + Sbjct: 165 ENFASHITGVSQERIGHEVARAFDGDGFL-FFRFVRSHGLMAVFFPFLEKL----WGQRL 219 Query: 251 EAEQVFEWKIDSLLR-FIVLISWQDKK 276 EA V+E D LL F+ L S Q+++ Sbjct: 220 EAGSVYEG--DCLLHSFLSLQSAQEQR 244 >gi|217974315|ref|YP_002359066.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS223] gi|254813698|sp|B8EBU8|CCA_SHEB2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|217499450|gb|ACK47643.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS223] Length = 416 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 18/215 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHPKN-----QQEYA 59 Query: 90 DITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R L G + D LRRD TINA+ D++G + D G+ DL R Sbjct: 60 LARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGIEDLNAR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA +ED LRILR RF A + ++ L+ I A L L++ER Sbjct: 120 LLRHVSDA---FVEDPLRILRVARFAARFHALGFHIAAETLALMRQISASDELNALTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGG----IFKEIF 235 +W E++K L +P ++ G +F EIF Sbjct: 177 VWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIF 211 >gi|296135509|ref|YP_003642751.1| poly(A) polymerase [Thiomonas intermedia K12] gi|295795631|gb|ADG30421.1| poly(A) polymerase [Thiomonas intermedia K12] Length = 478 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 26/222 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N + L + ++ IVGGAVRD L+ L +D D+AT P++V +F + R++++ Sbjct: 46 NTVQTLQQAGFEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKPLFKRAFIIGRRFRIV 105 Query: 72 PTSISYGTIKIICRKKYFDITTLRS---------------DLITDGRYAKVVFTRDWKA- 115 I++ + D S L D +V+ W Sbjct: 106 HVMYGRDIIEVSTYRALHDAQAAESVDGNERTSRRALADKTLAVDS-SGRVLRDNVWGTL 164 Query: 116 --DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFTINALY D + V+DY G+ DL+ R ++ IGD R ED +R+LR R Sbjct: 165 DDDAERRDFTINALYYDPIRDVVVDYHRGMKDLKERRLRMIGDPAARYREDPVRMLRIAR 224 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 F A G +ID L + L + + R++ E KLL+ Sbjct: 225 FAAKLG-FDIDPATLAPIGPSADLLANVPAARLFDETIKLLQ 265 >gi|269214303|ref|ZP_05986289.2| poly(A) polymerase [Neisseria lactamica ATCC 23970] gi|269210162|gb|EEZ76617.1| poly(A) polymerase [Neisseria lactamica ATCC 23970] Length = 469 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 14/204 (6%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 61 NVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV 120 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + D++RRDFT NALY D Sbjct: 121 HVMNGAETIEVTTFRGGAKVQQNARGRIMKDNTYGSI------GEDAMRRDFTCNALYYD 174 Query: 131 QQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G K + + Sbjct: 175 PETEEILDFHNGVADIAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFK-LSEETAAP 233 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 ++ LK R++ EI KLL Sbjct: 234 IAESICRLKHEPVARLFDEIMKLL 257 >gi|198283568|ref|YP_002219889.1| poly(A) polymerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248089|gb|ACH83682.1| poly(A) polymerase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 497 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 15/234 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----YKVI 71 + +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F + + I Sbjct: 55 LQVLNGLHRAGFQAYLVGGSVRDLLLGREPKDFDVATDAHPEQVRKLFRRNARLIGRRFI 114 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINAL 127 + +G +II + + D ++ GR + D+ RRDFT NAL Sbjct: 115 LVHVQFGN-EIIEVATFRGSANGKEDESSEHSETGRILADNVYGSLEEDARRRDFTANAL 173 Query: 128 Y---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 Y AD+ ++D+ G+ DL+ ++ IGD R ED +R+LR RF A G +D+ Sbjct: 174 YYNIADR--SILDFSTGMEDLQAGRLRVIGDPEQRYREDPVRMLRAVRFAAKLG-FTLDA 230 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +K L+ + S R++ E KL N + H+ G+F +F V Sbjct: 231 AAQAPIAACRKLLQEVPSARLFEETLKLFLTGNAQTSFEHLRQMGLFAALFPQV 284 >gi|294339615|emb|CAZ87974.1| putative Poly(A) polymerase, PcnB [Thiomonas sp. 3As] Length = 478 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 26/222 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N + L + ++ IVGGAVRD L+ L +D D+AT P++V +F + R++++ Sbjct: 46 NTVQTLQQAGFEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKPLFKRAFIIGRRFRIV 105 Query: 72 PTSISYGTIKIICRKKYFDITTLRS---------------DLITDGRYAKVVFTRDWKA- 115 I++ + D S L D +V+ W Sbjct: 106 HVMYGRDIIEVSTYRALHDAQAAESVDGNERTSRRALADKTLAVDS-SGRVLRDNVWGTL 164 Query: 116 --DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFTINALY D + V+DY G+ DL+ R ++ IGD R ED +R+LR R Sbjct: 165 DDDAERRDFTINALYYDPIRDVVVDYHRGMKDLKERRLRMIGDPAARYREDPVRMLRIAR 224 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 F A G +ID L + L + + R++ E KLL+ Sbjct: 225 FAAKLG-FDIDPATLAPIGPSADLLANVPAARLFDETIKLLQ 265 >gi|121634621|ref|YP_974866.1| putative poly(A) polymerase [Neisseria meningitidis FAM18] gi|120866327|emb|CAM10068.1| putative poly(A) polymerase [Neisseria meningitidis FAM18] Length = 448 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 38 NVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 93 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 94 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 153 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +++D+ G+ D+ R + IGDA R ED +RILR R G Sbjct: 154 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG 200 >gi|108761014|ref|YP_630764.1| poly(A) polymerase [Myxococcus xanthus DK 1622] gi|108464894|gb|ABF90079.1| poly(A) polymerase [Myxococcus xanthus DK 1622] Length = 548 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 22/219 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + ++ L++ ++ +VGG VRD L+ +D DIAT+ P+ V IF R Sbjct: 119 DPDALKVVLRLHQHGHQAYMVGGCVRDLLLGRKPKDFDIATSATPNEVRGIFRNCRLIGR 178 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-----------VVFTRD-----WKA 115 +++ K K +++T R++ T+ +A ++ T D + Sbjct: 179 RFRLAHVYFKG---GKIIEVSTFRAN-PTELEHAANGGEDEGDGEDLLITHDNVFGTAQQ 234 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTIN L+ D +G+VIDYV G DL R I+ IGD R+ ED +RILR RF Sbjct: 235 DARRRDFTINGLFYDVAEGRVIDYVRGRRDLDERFIRTIGDPEVRMREDPVRILRAVRFA 294 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 A G +I+S A A + L + R+ E +L+ Sbjct: 295 AKLG-LDIESRTYAAMEGAVEDLPRCAPARLLEETFRLI 332 >gi|94500957|ref|ZP_01307482.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oceanobacter sp. RED65] gi|94426897|gb|EAT11880.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oceanobacter sp. RED65] Length = 445 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 21/242 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 + + +L L K ++ +VGG VRD L+ L +D D+ T P+ V ++F + R Sbjct: 37 ENALKVLYRLKKSGYEAHLVGGGVRDLLLGLHPKDFDVVTDASPEEVHKLFKNSRIIGRR 96 Query: 68 YKVIPTSISYGTIKII--------CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 ++++ + I++ K+ T L+ D Y + D++R Sbjct: 97 FRLVHVTFGRDMIEVATFRGDHGNAEGKHQSKTNEAGMLLRDNVYGSI------DEDAMR 150 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINALY + V Y GG++D+ + ++ IGD R ED +R+LR RF A G Sbjct: 151 RDFTINALYYNIADFSVKSYAGGIDDIHAKRLRLIGDPETRYREDPVRMLRAARFAAKLG 210 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ID + L+ + R++ E+ KL A + G+F+ +F Sbjct: 211 F-SIDKSSKAPIKELAPLLRDIPPARLFEEVLKLFMAGYAKATFEQLQALGLFEPLFPHT 269 Query: 239 QE 240 Q+ Sbjct: 270 QQ 271 >gi|254670458|emb|CBA06113.1| poly(A) polymerase [Neisseria meningitidis alpha153] Length = 453 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +++D+ G+ D+ R + IGDA R ED +RILR R G Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG 205 >gi|225024314|ref|ZP_03713506.1| hypothetical protein EIKCOROL_01189 [Eikenella corrodens ATCC 23834] gi|224942899|gb|EEG24108.1| hypothetical protein EIKCOROL_01189 [Eikenella corrodens ATCC 23834] Length = 457 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 31/247 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++S L + ++ +VGGAVRD L+ + +D D+AT P+ V ++F ++R + Sbjct: 45 VVSRLQQAGFEAYVVGGAVRDLLLGIEPKDFDVATNARPEEVRKVFRRSRI----IGRRF 100 Query: 78 GTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRRDFTINA 126 + ++ + ++TT R ++ D Y + + D+ RRDFT NA Sbjct: 101 QIVHVMVGPETIEVTTFRGGGSPARQNEHGRIMQDNSYGSM------EQDAARRDFTCNA 154 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDS 184 LY + +G++ D+ G+ D+R + + IGDA R ED +R+LR R G + D+ Sbjct: 155 LYYNPARGEITDFHHGVADIRAKRLVMIGDARARYQEDPVRMLRAARLSGKLGFQVAPDT 214 Query: 185 DGLVASIKAKKGLKILSSE---RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +A L +L E R++ E+ KLL + ++ + M G+ + + Sbjct: 215 AAPIAEC-----LHLLPKEPLARLFDEVMKLLFSGAAIDCLKQMQALGMDGQSVHPLLAC 269 Query: 242 SLDQLSQ 248 +L++L + Sbjct: 270 ALERLPE 276 >gi|34497087|ref|NP_901302.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC 12472] gi|34102944|gb|AAQ59308.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC 12472] Length = 450 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 16/228 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + + S L + + +VGGAVRD ++ +S +D D+AT P++V +F ++ R+++ Sbjct: 41 LRVTSRLQEAGFSAFVVGGAVRDLMLGVSPKDFDVATNATPEQVHHLFRRSRIIGRRFRI 100 Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + + TI++ R D T ++ D + + D+ RRDFT+NAL+ Sbjct: 101 VHVMMGPETIEVTTFRGGSVDDTNETGRIMADNSFGS------QEEDAHRRDFTVNALFY 154 Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D + VIDY G+ DL + + IG R ED +R+LR R A G ID D Sbjct: 155 DPSDETVIDYHHGVKDLHAKKLVMIGQPARRYQEDPVRMLRAVRLAAKLG-FEIDED-TK 212 Query: 189 ASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I+A LK R++ E+ KLL + + + + G+ + +F Sbjct: 213 KPIRAHAHLLKKEPPARLFDELLKLLMSGHAYACLKKLREEGLARGVF 260 >gi|302335866|ref|YP_003801073.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Olsenella uli DSM 7084] gi|301319706|gb|ADK68193.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Olsenella uli DSM 7084] Length = 464 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 3/185 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD+L+ D+D+ T+ + R+ +V T +++GT+ + + + Sbjct: 31 VVGGWVRDALLGTPSHDVDVTTSAPWEAAARVLRAAGIEVHETGVAHGTVTAVVDGRAVE 90 Query: 91 ITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 TT R + +D R+ +V+F D + D RRD T+NA+ ++D GG DL Sbjct: 91 TTTYRVEGSYSDHRHPDEVLFVDDIRDDLARRDLTVNAMAYHPARGLLDPFGGREDLATG 150 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +G R ED LR+LR RF G ++ A + +GL ++ ERI E Sbjct: 151 VIRAVGVPRRRFEEDALRVLRAVRFACRLG-FVVEPHTQEALVACARGLGDIARERIGQE 209 Query: 209 INKLL 213 ++ ++ Sbjct: 210 LDGIV 214 >gi|325203914|gb|ADY99367.1| poly(A) polymerase [Neisseria meningitidis M01-240355] Length = 445 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 35 NVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 90 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 91 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 150 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +++D+ G+ D+ R + IGDA R ED +RILR R G Sbjct: 151 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG 197 >gi|311280885|ref|YP_003943116.1| poly(A) polymerase [Enterobacter cloacae SCF1] gi|308750080|gb|ADO49832.1| poly(A) polymerase [Enterobacter cloacae SCF1] Length = 473 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R Sbjct: 54 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRL---- 109 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD +T R + RD + D+ RR Sbjct: 110 VGRRFRLAHVMFGPEIIEVATFRGHHEGSASDRVTSQRGQNGMLLRDNIFGSIEEDAQRR 169 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A G Sbjct: 170 DFTINSLYYSVADFTVRDYVGGMRDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLG- 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 +I ++ + + + R++ E KLL+A Sbjct: 229 MSISAETAEPIPRLATLINDVPPARLFEESLKLLQA 264 >gi|206580700|ref|YP_002236534.1| multifunctional CCA protein [Klebsiella pneumoniae 342] gi|226702067|sp|B5XU35|CCA_KLEP3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|206569758|gb|ACI11534.1| multifunctional CCA protein [Klebsiella pneumoniae 342] Length = 413 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 93/197 (47%), Gaps = 14/197 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + R+ Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQS-----RE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G +AD LRRD T+NAL D G +ID GG NDL Sbjct: 57 EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGTIIDPYGGQNDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R R ++ + A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 117 RLRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMHAMVEAGELAHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E L +NP Sbjct: 174 PERVWKETESALTTRNP 190 >gi|300859512|ref|YP_003784495.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|300686966|gb|ADK29888.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|302207195|gb|ADL11537.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis C231] gi|302331756|gb|ADL21950.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308277448|gb|ADO27347.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis I19] Length = 533 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 8/237 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + L K + +VGG+VRD+L++ D+D T P+ VM I + V T Sbjct: 70 LAPLAQLFQKRGHRLYLVGGSVRDALLDELGNDLDFTTDARPETVMEILNDYTSVVWDTG 129 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD-- 130 I +GT+ + +ITT RSD + DG R +V F + D +RRDF +NA+ + Sbjct: 130 IEFGTVSAEKDGQQIEITTFRSD-VYDGKTRNPEVQFGDSLEGDLIRRDFRVNAMAVEVH 188 Query: 131 QQGKVI--DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G++ D V G++DL + + +D LR+LR RF + E ++ Sbjct: 189 PTGEMTFHDPVKGMDDLVKKVLDTPSLPEQSFNDDPLRMLRAARFVSQL-EFSVADRVDN 247 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A + + ++ ERI E++KLL + P + I M + G+ + I ++ + L Q Sbjct: 248 AMTQMADQIDRITVERIQVELDKLLCGRAPWDGIDLMVDTGLAERIIPEIPALRLTQ 304 >gi|218667450|ref|YP_002426193.1| polyA polymerase [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519663|gb|ACK80249.1| polyA polymerase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 477 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 15/234 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----YKVI 71 + +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F + + I Sbjct: 35 LQVLNGLHRAGFQAYLVGGSVRDLLLGREPKDFDVATDAHPEQVRKLFRRNARLIGRRFI 94 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINAL 127 + +G +II + + D ++ GR + D+ RRDFT NAL Sbjct: 95 LVHVQFGN-EIIEVATFRGSANGKEDESSEHSETGRILADNVYGSLEEDARRRDFTANAL 153 Query: 128 Y---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 Y AD+ ++D+ G+ DL+ ++ IGD R ED +R+LR RF A G +D+ Sbjct: 154 YYNIADR--SILDFSTGMEDLQAGRLRVIGDPEQRYREDPVRMLRAVRFAAKLG-FTLDA 210 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +K L+ + S R++ E KL N + H+ G+F +F V Sbjct: 211 AAQAPIAACRKLLQEVPSARLFEETLKLFLTGNAQTSFEHLRQMGLFAALFPQV 264 >gi|172041689|ref|YP_001801403.1| tRNA nucleotidyltransferase [Corynebacterium urealyticum DSM 7109] gi|171852993|emb|CAQ05969.1| tRNA nucleotidyltransferase [Corynebacterium urealyticum DSM 7109] Length = 521 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 8/221 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T PD VM I V T I +GT+ + + Sbjct: 80 LVGGSVRDAMLARLSHDLDFTTDARPDAVMGILEPMAETVWDTGIEFGTVSALVGGLEVE 139 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 ITT R+D DG R +V F + D +RRDF NA L AD + + D +GGL D Sbjct: 140 ITTFRADQY-DGQSRNPEVTFGDTLEGDLVRRDFRANAMALKLSADGEHEFCDPLGGLAD 198 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 + + +D LR+LR RF + G + A + ++ ++ ER Sbjct: 199 VAAGVLDTPDSPEVSFRDDPLRMLRACRFVSQLG-FAVAPRVAEAMVAMADQIQRITVER 257 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + E+NKLL P + M G+ + ++ + + Q Sbjct: 258 VAVELNKLLLGTAPWEGLDLMVEAGLADYVLPELPRLRMTQ 298 >gi|16273496|ref|NP_439748.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae Rd KW20] gi|260580382|ref|ZP_05848211.1| tRNA nucleotidyltransferase [Haemophilus influenzae RdAW] gi|1168822|sp|P45269|CCA_HAEIN RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|1574448|gb|AAC23250.1| tRNA nucleotidyltransferase (cca) [Haemophilus influenzae Rd KW20] gi|260093059|gb|EEW76993.1| tRNA nucleotidyltransferase [Haemophilus influenzae RdAW] Length = 416 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMAELAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ERIW E K L KNP ++ G +F ++ Sbjct: 174 AERIWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|256829240|ref|YP_003157968.1| polynucleotide adenylyltransferase region [Desulfomicrobium baculatum DSM 4028] gi|256578416|gb|ACU89552.1| Polynucleotide adenylyltransferase region [Desulfomicrobium baculatum DSM 4028] Length = 892 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 104/439 (23%), Positives = 190/439 (43%), Gaps = 71/439 (16%) Query: 14 DLINILSLLNKGEDKSCI----VGGAVRDSLMNLSVQDIDI---------ATTILPDRVM 60 D++++L L + + + VGG VRD L+ + DID+ A + Sbjct: 466 DIVSLLQLAGQTGQELGVEVYAVGGFVRDMLLGIPNDDIDLVVEGDGIVFAQNLGHKLAA 525 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R+ S +++ + I+ + D+ T R + +V K D RR Sbjct: 526 RVRSHLKFRT--------AVLILPSGQKIDVATARLEYYEYPAALPIVELSSLKMDLYRR 577 Query: 121 DFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DF+IN L G+++D+ GG DL++ I+ + +ED RI+R RF Sbjct: 578 DFSINTLAIHLCPPHFGRLVDFFGGQQDLKDGVIRVLHSLS--FVEDPTRIIRAIRFEQR 635 Query: 177 YGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI- 234 + K ++ L+ + + LS RI E+ L E PL+A++ M + G+ +EI Sbjct: 636 FQFKIGSQTERLIKNAVRLNIFQKLSGARIRHELRLLAEDSAPLDALIRMRDLGLLQEIH 695 Query: 235 ----FLDVQEISLDQLSQVIEAEQVFEWKIDS----LLRFIVLISWQDKKSILSMAKKFS 286 F +E L+++ ++I ++ ++ +S ++ F+ L+S D + ++ + Sbjct: 696 PLLHFPQTKEALLEEIEKIITWYKLL-FREESPDIWIVYFLGLVSGFDTHQVQALTSRLK 754 Query: 287 LP-----------REIRYFLISFFNCNFNQKTLS-IPEIKKLFYLYGDKVMIAK---LKI 331 P R++RY + N+ +L+ + EI L G +AK L++ Sbjct: 755 FPPKRTDLVESTRRQLRYVAMQLAQWGKNEGSLADLYEILSPLSLEGLLYTMAKQRKLEL 814 Query: 332 FLAL-HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 A+ HY LTH IL +TG D+ + G+ PG + NIL K+ Sbjct: 815 KKAISHY--LTHLQDVGIL---------------VTGSDIKEMGLEPGPQFANILRAVKR 857 Query: 391 EWINSSFQLSQEDLHHLLR 409 +N+ + +E L + R Sbjct: 858 AVLNAEVRTREEQLKYAKR 876 >gi|288933518|ref|YP_003437577.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Klebsiella variicola At-22] gi|290511423|ref|ZP_06550792.1| tRNA nucleotidyltransferase [Klebsiella sp. 1_1_55] gi|288888247|gb|ADC56565.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Klebsiella variicola At-22] gi|289776416|gb|EFD84415.1| tRNA nucleotidyltransferase [Klebsiella sp. 1_1_55] Length = 413 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 93/197 (47%), Gaps = 14/197 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + R+ Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQS-----RE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G +AD LRRD T+NAL D G +ID GG NDL Sbjct: 57 EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGTIIDPYGGQNDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R R ++ + A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 117 RLRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMHAMVEAGELAHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E L +NP Sbjct: 174 PERVWKETESALTTRNP 190 >gi|260771264|ref|ZP_05880191.1| tRNA nucleotidyltransferase [Vibrio furnissii CIP 102972] gi|260613861|gb|EEX39053.1| tRNA nucleotidyltransferase [Vibrio furnissii CIP 102972] Length = 405 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 111/239 (46%), Gaps = 32/239 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L + D D + PD +++ + K P + T R+++ Sbjct: 6 LVGGAVRDQLLQLPIYDKDWVVVGSSPDAMLQAGFQAVGKDFPVFLHPKT-----REEH- 59 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T Y F D +AD RRD TINA+ DQ G +ID GG DL Sbjct: 60 --ALARTERKTGAGYTGFACHFAPDVTLEADLQRRDLTINAMAQDQDGTLIDPYGGQRDL 117 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILS 201 +R ++ + +A +ED LR+LR RF AH G D L+ I A L L+ Sbjct: 118 HDRVLRHVSEA---FVEDPLRVLRVARFAAKLAHLGFSVADETLALMQRISASGELAHLT 174 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQVIEAEQVFEW 258 ER+W E +K L ++P IF ++ D +I L +L ++ Q +W Sbjct: 175 PERVWQEWHKSLSTQSP----------HIFLQVLRDCGALQIVLPELDRLFGVPQPEKW 223 >gi|261379064|ref|ZP_05983637.1| poly(A) polymerase [Neisseria cinerea ATCC 14685] gi|269144521|gb|EEZ70939.1| poly(A) polymerase [Neisseria cinerea ATCC 14685] Length = 453 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R + + ++ + Sbjct: 54 QAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRRFQIVHVMNGAE 109 Query: 88 YFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGL 142 ++TT R GR K + D++RRDFT NALY D ++ +++D+ G+ Sbjct: 110 VIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYDPEKEEILDFHNGM 169 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 D+ R + IG+A R ED +RILR R G E + + G +A + LK Sbjct: 170 ADIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQATAGPIAESIGR--LKHEP 227 Query: 202 SERIWSEINKLL 213 R++ EI KLL Sbjct: 228 VARLFDEIMKLL 239 >gi|123500935|ref|XP_001327963.1| polyA polymerase family protein [Trichomonas vaginalis G3] gi|121910900|gb|EAY15740.1| polyA polymerase family protein [Trichomonas vaginalis G3] Length = 454 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 17/229 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMRIFSKTRYKVI------PTSISYGT 79 IVGG VRD L+ DID + +++ ++ SK + + S G+ Sbjct: 44 IVGGWVRDKLLGSHSDDIDFSIEGTDGLTFANKIKKVASKAEFPDLVVMANPDQSAHIGS 103 Query: 80 IKI-ICRKKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVI 136 K+ + + Y DI LR D TD R V+ + D++RRD TIN+++ + KV Sbjct: 104 AKVYLTPEFYIDICGLRWDDYSTDSRIP-VITVGTPQQDAIRRDVTINSIFLNINTFKVE 162 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D+ G+ DL NR ++ A L+D LRILR FRF A Y + N+ D + ++ A+ Sbjct: 163 DFTNGIPDLENRLLRTPQPAGQSFLDDPLRILRIFRFGARY-DFNLHEDIIPSAASARSE 221 Query: 197 LKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 ++ +++ER EI K LE + + G+F+ +F + S+D Sbjct: 222 YEVKVTAERANLEITKALEGPLAYKYVTWIAEAGMFQSVFDPSKSFSID 270 >gi|218703399|ref|YP_002410918.1| poly(A) polymerase I [Escherichia coli UMN026] gi|218430496|emb|CAR11362.1| poly(A) polymerase I [Escherichia coli UMN026] Length = 472 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|322812375|pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) gi|322812376|pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii) Length = 415 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 19 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 74 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 75 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 134 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 135 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 194 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 195 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 229 >gi|331645278|ref|ZP_08346389.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli M605] gi|30039945|gb|AAP15679.1| poly(A) polymerase I [Shigella flexneri 2a str. 2457T] gi|56383162|gb|AAN41798.2| poly(A) polymerase I [Shigella flexneri 2a str. 301] gi|281177366|dbj|BAI53696.1| poly(A) polymerase [Escherichia coli SE15] gi|330909990|gb|EGH38500.1| polyA polymerase [Escherichia coli AA86] gi|331046035|gb|EGI18154.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli M605] gi|332762142|gb|EGJ92411.1| poly(A) polymerase family protein [Shigella flexneri 4343-70] gi|332762374|gb|EGJ92641.1| poly(A) polymerase family protein [Shigella flexneri 2747-71] gi|332764987|gb|EGJ95215.1| poly(A) polymerase family protein [Shigella flexneri K-671] gi|332768930|gb|EGJ99109.1| poly(A) polymerase I [Shigella flexneri 2930-71] gi|333009186|gb|EGK28642.1| poly(A) polymerase family protein [Shigella flexneri K-218] gi|333010635|gb|EGK30068.1| poly(A) polymerase family protein [Shigella flexneri VA-6] gi|333022260|gb|EGK41498.1| poly(A) polymerase family protein [Shigella flexneri K-304] Length = 454 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|307826250|ref|ZP_07656459.1| poly(A) polymerase [Methylobacter tundripaludum SV96] gi|307732712|gb|EFO03580.1| poly(A) polymerase [Methylobacter tundripaludum SV96] Length = 467 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 23/238 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + +L L K + +VGG VRD L+ +D D+ T PD+V ++F R +++ Sbjct: 54 LKVLYRLQKEGFDAYLVGGCVRDLLLGREPKDFDVVTNADPDQVRKVFRNCRLIGRRFRL 113 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 I++ + + + L +GR + + D RRDFT+NALY + Sbjct: 114 AHVHFGREIIEVATFRGAGEEQNDKQVLNKEGRLLRDNVYGTIEEDVWRRDFTVNALYYN 173 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNI 182 + V+DYVGG+ D + T+K IGD R ED +R+LR RF G EK I Sbjct: 174 IKDFSVVDYVGGMADHKTGTLKLIGDPEMRFREDPVRMLRAVRFAVKLGFKLDSACEKAI 233 Query: 183 DSD-GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D L+ASI S R++ E KL + L + + G+F+ +F + Sbjct: 234 HNDVQLLASI---------PSARLYDEALKLFLSGYALQTFEMLRHYGLFQVLFPSTE 282 >gi|307629719|gb|ADN74023.1| poly(A) polymerase I [Escherichia coli UM146] Length = 454 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|296315340|ref|ZP_06865281.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768] gi|296837718|gb|EFH21656.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768] Length = 474 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 16/205 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L ++ +VGGA+RD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 43 NVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIVGRRFQIV 102 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + + D++RRDFT NALY D Sbjct: 103 HVMNGVETIEVTTFRGGAKVHQNARGRIMKDNTYGSI------EEDAMRRDFTCNALYYD 156 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 ++ +++D+ G+ D+ R + IGDA R ED +RILR R G E + ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLGFELSEETAAPI 216 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 217 AESICR--LKHEPVARLFDEIMKLL 239 >gi|206578248|ref|YP_002240384.1| poly(A) polymerase [Klebsiella pneumoniae 342] gi|288937089|ref|YP_003441148.1| poly(A) polymerase [Klebsiella variicola At-22] gi|290512511|ref|ZP_06551877.1| poly(A) polymerase [Klebsiella sp. 1_1_55] gi|206567306|gb|ACI09082.1| poly(A) polymerase [Klebsiella pneumoniae 342] gi|288891798|gb|ADC60116.1| poly(A) polymerase [Klebsiella variicola At-22] gi|289774852|gb|EFD82854.1| poly(A) polymerase [Klebsiella sp. 1_1_55] Length = 453 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 18/236 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK +S +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R +D +T + + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGHTTDRVTSQQGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A + Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKL-D 209 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E+ KLL+A + + +F+ +F Sbjct: 210 MRISPETAEPLPRLATLLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYNLFQPLF 265 >gi|300919704|ref|ZP_07136192.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1] gi|300413238|gb|EFJ96548.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1] Length = 454 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|293403213|ref|ZP_06647310.1| pcnB [Escherichia coli FVEC1412] gi|298378747|ref|ZP_06988631.1| poly(A) polymerase [Escherichia coli FVEC1302] gi|300900821|ref|ZP_07118963.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1] gi|331661517|ref|ZP_08362441.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA143] gi|291430128|gb|EFF03142.1| pcnB [Escherichia coli FVEC1412] gi|298281081|gb|EFI22582.1| poly(A) polymerase [Escherichia coli FVEC1302] gi|300355698|gb|EFJ71568.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1] gi|331061432|gb|EGI33395.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA143] Length = 454 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|312944753|gb|ADR25580.1| poly(A) polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 472 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|293408235|ref|ZP_06652075.1| pcnB [Escherichia coli B354] gi|301026010|ref|ZP_07189491.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1] gi|331671653|ref|ZP_08372451.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA280] gi|291472486|gb|EFF14968.1| pcnB [Escherichia coli B354] gi|300395720|gb|EFJ79258.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1] gi|331071498|gb|EGI42855.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA280] Length = 454 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|117622430|ref|YP_851343.1| poly(A) polymerase I [Escherichia coli APEC O1] gi|168751363|ref|ZP_02776385.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113] gi|168755755|ref|ZP_02780762.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401] gi|168764713|ref|ZP_02789720.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501] gi|168770386|ref|ZP_02795393.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486] gi|168782034|ref|ZP_02807041.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076] gi|168789251|ref|ZP_02814258.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869] gi|168801481|ref|ZP_02826488.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508] gi|170680324|ref|YP_001742271.1| poly(A) polymerase I [Escherichia coli SMS-3-5] gi|187731223|ref|YP_001878946.1| poly(A) polymerase I [Shigella boydii CDC 3083-94] gi|188493474|ref|ZP_03000744.1| poly(A) polymerase [Escherichia coli 53638] gi|191166336|ref|ZP_03028168.1| poly(A) polymerase [Escherichia coli B7A] gi|191172771|ref|ZP_03034308.1| poly(A) polymerase [Escherichia coli F11] gi|193063166|ref|ZP_03044257.1| poly(A) polymerase [Escherichia coli E22] gi|194428279|ref|ZP_03060821.1| poly(A) polymerase [Escherichia coli B171] gi|194433394|ref|ZP_03065673.1| poly(A) polymerase [Shigella dysenteriae 1012] gi|195938175|ref|ZP_03083557.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4024] gi|208807142|ref|ZP_03249479.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206] gi|208814587|ref|ZP_03255916.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045] gi|208821338|ref|ZP_03261658.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042] gi|209398537|ref|YP_002268752.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4115] gi|215485303|ref|YP_002327734.1| poly(A) polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|217326217|ref|ZP_03442301.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588] gi|227884943|ref|ZP_04002748.1| polynucleotide adenylyltransferase [Escherichia coli 83972] gi|256025455|ref|ZP_05439320.1| poly(A) polymerase I [Escherichia sp. 4_1_40B] gi|260842377|ref|YP_003220155.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009] gi|261226898|ref|ZP_05941179.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261255302|ref|ZP_05947835.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|300816181|ref|ZP_07096404.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1] gi|300938547|ref|ZP_07153283.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1] gi|300949830|ref|ZP_07163800.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1] gi|300956012|ref|ZP_07168342.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1] gi|300984714|ref|ZP_07177077.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1] gi|300993664|ref|ZP_07180491.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1] gi|301028631|ref|ZP_07191857.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1] gi|301049947|ref|ZP_07196868.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1] gi|301646461|ref|ZP_07246340.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1] gi|307136743|ref|ZP_07496099.1| poly(A) polymerase I [Escherichia coli H736] gi|307311408|ref|ZP_07591050.1| poly(A) polymerase [Escherichia coli W] gi|309796317|ref|ZP_07690726.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7] gi|312966274|ref|ZP_07780500.1| poly(A) polymerase family protein [Escherichia coli 2362-75] gi|331640597|ref|ZP_08341745.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H736] gi|331651047|ref|ZP_08352075.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli M718] gi|331661215|ref|ZP_08362147.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA206] gi|331681528|ref|ZP_08382165.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H299] gi|25389668|pir||C90647 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|13359603|dbj|BAB33570.1| poly(A) polymerase I [Escherichia coli O157:H7 str. Sakai] gi|73854241|gb|AAZ86948.1| poly(A) polymerase I [Shigella sonnei Ss046] gi|115511554|gb|ABI99628.1| poly(A) polymerase I [Escherichia coli APEC O1] gi|170518042|gb|ACB16220.1| poly(A) polymerase [Escherichia coli SMS-3-5] gi|187428215|gb|ACD07489.1| poly(A) polymerase [Shigella boydii CDC 3083-94] gi|188014580|gb|EDU52702.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113] gi|188488673|gb|EDU63776.1| poly(A) polymerase [Escherichia coli 53638] gi|189000464|gb|EDU69450.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076] gi|189356985|gb|EDU75404.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401] gi|189360734|gb|EDU79153.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486] gi|189365327|gb|EDU83743.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501] gi|189371104|gb|EDU89520.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869] gi|189376394|gb|EDU94810.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508] gi|190903587|gb|EDV63304.1| poly(A) polymerase [Escherichia coli B7A] gi|190906921|gb|EDV66523.1| poly(A) polymerase [Escherichia coli F11] gi|192931074|gb|EDV83677.1| poly(A) polymerase [Escherichia coli E22] gi|194413654|gb|EDX29934.1| poly(A) polymerase [Escherichia coli B171] gi|194418322|gb|EDX34412.1| poly(A) polymerase [Shigella dysenteriae 1012] gi|208726943|gb|EDZ76544.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206] gi|208735864|gb|EDZ84551.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045] gi|208741461|gb|EDZ89143.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042] gi|209159937|gb|ACI37370.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4115] gi|209746094|gb|ACI71354.1| poly(A) polymerase I [Escherichia coli] gi|209746096|gb|ACI71355.1| poly(A) polymerase I [Escherichia coli] gi|209746098|gb|ACI71356.1| poly(A) polymerase I [Escherichia coli] gi|209746100|gb|ACI71357.1| poly(A) polymerase I [Escherichia coli] gi|209746102|gb|ACI71358.1| poly(A) polymerase I [Escherichia coli] gi|215263375|emb|CAS07694.1| poly(A) polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|217322438|gb|EEC30862.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588] gi|227838081|gb|EEJ48547.1| polynucleotide adenylyltransferase [Escherichia coli 83972] gi|257757524|dbj|BAI29021.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009] gi|260450652|gb|ACX41074.1| poly(A) polymerase [Escherichia coli DH1] gi|294490657|gb|ADE89413.1| poly(A) polymerase [Escherichia coli IHE3034] gi|299878345|gb|EFI86556.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1] gi|300298309|gb|EFJ54694.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1] gi|300306620|gb|EFJ61140.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1] gi|300317139|gb|EFJ66923.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1] gi|300406499|gb|EFJ90037.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1] gi|300450779|gb|EFK14399.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1] gi|300456499|gb|EFK19992.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1] gi|300531388|gb|EFK52450.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1] gi|301075330|gb|EFK90136.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1] gi|306908387|gb|EFN38885.1| poly(A) polymerase [Escherichia coli W] gi|308120021|gb|EFO57283.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7] gi|312289517|gb|EFR17411.1| poly(A) polymerase family protein [Escherichia coli 2362-75] gi|315059363|gb|ADT73690.1| poly(A) polymerase I [Escherichia coli W] gi|315134834|dbj|BAJ41993.1| poly(A) polymerase I [Escherichia coli DH1] gi|315285223|gb|EFU44668.1| polynucleotide adenylyltransferase [Escherichia coli MS 110-3] gi|315294623|gb|EFU53970.1| polynucleotide adenylyltransferase [Escherichia coli MS 153-1] gi|315300716|gb|EFU59943.1| polynucleotide adenylyltransferase [Escherichia coli MS 16-3] gi|315616374|gb|EFU96992.1| poly(A) polymerase family protein [Escherichia coli 3431] gi|320177485|gb|EFW52481.1| Poly(A) polymerase [Shigella dysenteriae CDC 74-1112] gi|320186563|gb|EFW61288.1| Poly(A) polymerase [Shigella flexneri CDC 796-83] gi|320190332|gb|EFW64982.1| Poly(A) polymerase [Escherichia coli O157:H7 str. EC1212] gi|320639950|gb|EFX09535.1| poly(A) polymerase I [Escherichia coli O157:H7 str. G5101] gi|320647543|gb|EFX16338.1| poly(A) polymerase I [Escherichia coli O157:H- str. 493-89] gi|320652877|gb|EFX21115.1| poly(A) polymerase I [Escherichia coli O157:H- str. H 2687] gi|320658265|gb|EFX25994.1| poly(A) polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663575|gb|EFX30859.1| poly(A) polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320668887|gb|EFX35682.1| poly(A) polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323160155|gb|EFZ46115.1| poly(A) polymerase family protein [Escherichia coli E128010] gi|323166039|gb|EFZ51819.1| poly(A) polymerase family protein [Shigella sonnei 53G] gi|323181842|gb|EFZ67255.1| poly(A) polymerase family protein [Escherichia coli 1357] gi|323190462|gb|EFZ75737.1| poly(A) polymerase family protein [Escherichia coli RN587/1] gi|323934984|gb|EGB31357.1| poly(A) polymerase [Escherichia coli E1520] gi|323939892|gb|EGB36091.1| poly(A) polymerase [Escherichia coli E482] gi|323945619|gb|EGB41668.1| poly(A) polymerase [Escherichia coli H120] gi|323950857|gb|EGB46734.1| poly(A) polymerase [Escherichia coli H252] gi|323955105|gb|EGB50880.1| poly(A) polymerase [Escherichia coli H263] gi|323970690|gb|EGB65945.1| poly(A) polymerase [Escherichia coli TA007] gi|324008275|gb|EGB77494.1| polynucleotide adenylyltransferase [Escherichia coli MS 57-2] gi|324012201|gb|EGB81420.1| polynucleotide adenylyltransferase [Escherichia coli MS 60-1] gi|324017792|gb|EGB87011.1| polynucleotide adenylyltransferase [Escherichia coli MS 117-3] gi|324118493|gb|EGC12387.1| poly(A) polymerase [Escherichia coli E1167] gi|326339802|gb|EGD63610.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1044] gi|326345137|gb|EGD68880.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1125] gi|331040343|gb|EGI12550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H736] gi|331051501|gb|EGI23550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli M718] gi|331052257|gb|EGI24296.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA206] gi|331081749|gb|EGI52910.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H299] gi|332095178|gb|EGJ00207.1| poly(A) polymerase family protein [Shigella boydii 5216-82] gi|332097927|gb|EGJ02900.1| poly(A) polymerase family protein [Shigella dysenteriae 155-74] gi|332098923|gb|EGJ03874.1| poly(A) polymerase family protein [Shigella boydii 3594-74] Length = 454 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|222031976|emb|CAP74714.1| Poly(A) polymerase [Escherichia coli LF82] Length = 454 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|331006253|ref|ZP_08329573.1| Poly(A) polymerase [gamma proteobacterium IMCC1989] gi|330419942|gb|EGG94288.1| Poly(A) polymerase [gamma proteobacterium IMCC1989] Length = 439 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 17/162 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPTSISYGTIKI 82 ++ +VGG++RD L+ +D D++T P+ V ++F R ++++ I++ Sbjct: 40 QAYLVGGSIRDGLLGCQPKDFDVSTDATPEEVKKVFRNARIIGRRFRIVHVRFGREIIEV 99 Query: 83 IC-RKKYFD----ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVI 136 R K D + + L+ D Y + +D++RRDFT+NALY + + G V Sbjct: 100 TTFRGKSSDSSHQVESNTGQLLRDNVYGNM------HSDAIRRDFTVNALYYSPENGSVY 153 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 DY G++D++ R ++ IGD R ED +R+LR RF A G Sbjct: 154 DYTNGVDDIKKRQLRIIGDPLTRYKEDPVRLLRAIRFSAKLG 195 >gi|313646476|gb|EFS10937.1| poly(A) polymerase family protein [Shigella flexneri 2a str. 2457T] Length = 437 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 18 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 134 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 193 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 194 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 228 >gi|161950166|ref|YP_401882.2| poly(A) polymerase I [Shigella dysenteriae Sd197] Length = 472 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|91209212|ref|YP_539198.1| poly(A) polymerase I [Escherichia coli UTI89] gi|91070786|gb|ABE05667.1| poly(A) polymerase [Escherichia coli UTI89] Length = 472 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|194439099|ref|ZP_03071181.1| poly(A) polymerase [Escherichia coli 101-1] gi|254160263|ref|YP_003043371.1| poly(A) polymerase I [Escherichia coli B str. REL606] gi|297520614|ref|ZP_06939000.1| poly(A) polymerase I [Escherichia coli OP50] gi|300931725|ref|ZP_07147029.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1] gi|312970241|ref|ZP_07784423.1| poly(A) polymerase family protein [Escherichia coli 1827-70] gi|194421918|gb|EDX37923.1| poly(A) polymerase [Escherichia coli 101-1] gi|253972164|gb|ACT37835.1| poly(A) polymerase I [Escherichia coli B str. REL606] gi|253976373|gb|ACT42043.1| poly(A) polymerase I [Escherichia coli BL21(DE3)] gi|300460488|gb|EFK23981.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1] gi|310337739|gb|EFQ02850.1| poly(A) polymerase family protein [Escherichia coli 1827-70] gi|323960087|gb|EGB55733.1| poly(A) polymerase [Escherichia coli H489] gi|332341476|gb|AEE54810.1| poly(A) polymerase PcnB [Escherichia coli UMNK88] Length = 454 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|313201844|ref|YP_004040502.1| poly(a) polymerase [Methylovorus sp. MP688] gi|312441160|gb|ADQ85266.1| poly(A) polymerase [Methylovorus sp. MP688] Length = 455 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 15/208 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I L K ++ IVGGAVRD L+ +D D+AT P++V R+F ++R Sbjct: 50 IKTTEGLQKAGFEAFIVGGAVRDLLLKKRPKDFDVATNATPEQVNRVFRRSRI----IGR 105 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT----RD-----WKADSLRRDFTINA 126 + + ++ + +++T R + D AK+ + RD + D+LRRDFT NA Sbjct: 106 RFRLVHVLFGDETVEVSTFRGSHLNDDGDAKIADSGRILRDNVFGSQEDDALRRDFTANA 165 Query: 127 LYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D + V+D+ G D++ ++ IGD R ED +R+LR R A G K +D Sbjct: 166 LYYDPSSEDVLDFHNGYEDIQAGILRMIGDPVTRYREDPVRMLRAIRLSAKLGLK-LDKA 224 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLL 213 K L+ + + R++ E+ KL Sbjct: 225 TEAPIPKLADELQEVPASRLFDEMLKLF 252 >gi|284919920|emb|CBG32975.1| poly(A) polymerase [Escherichia coli 042] Length = 465 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 46 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 101 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 102 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 161 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 162 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 221 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 222 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 256 >gi|89107024|ref|AP_000804.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. W3110] gi|162135892|ref|NP_414685.4| poly(A) polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|170079780|ref|YP_001729100.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|238899542|ref|YP_002925338.1| poly(A) polymerase I [Escherichia coli BW2952] gi|254791278|ref|YP_003076115.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359] gi|115311610|sp|P0ABF3|PCNB_ECO57 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein gi|115311611|sp|P0ABF2|PCNB_ECOL6 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein gi|115311612|sp|P0ABF1|PCNB_ECOLI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein gi|85674351|dbj|BAB96720.2| poly(A) polymerase I [Escherichia coli str. K12 substr. W3110] gi|87081691|gb|AAC73254.2| poly(A) polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|169887615|gb|ACB01322.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|238862072|gb|ACR64070.1| poly(A) polymerase I [Escherichia coli BW2952] gi|254590678|gb|ACT70039.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359] gi|323380078|gb|ADX52346.1| poly(A) polymerase [Escherichia coli KO11] Length = 465 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 46 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 101 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 102 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 161 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 162 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 221 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 222 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 256 >gi|76789141|ref|YP_328227.1| polyA polymerase [Chlamydia trachomatis A/HAR-13] gi|76167671|gb|AAX50679.1| polyA polymerase [Chlamydia trachomatis A/HAR-13] Length = 425 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 47 LSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKN----CILVGK 102 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALYAD 130 + I + ++ T RS + T+D W + D LRRDFTIN L+ D Sbjct: 103 RFRLAHIRFPNQIIEVATFRSG----SNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++I DY GG+ DL++R ++ IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSAEIIIDYTGGVEDLKSRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 ++ L S R++ EI K+L + Sbjct: 218 LQESCHELVKSSQPRVFEEIIKVLSS 243 >gi|323171311|gb|EFZ56959.1| poly(A) polymerase family protein [Escherichia coli LT-68] Length = 454 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|320200334|gb|EFW74920.1| Poly(A) polymerase [Escherichia coli EC4100B] Length = 454 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|170021503|ref|YP_001726457.1| poly(A) polymerase I [Escherichia coli ATCC 8739] gi|169756431|gb|ACA79130.1| poly(A) polymerase [Escherichia coli ATCC 8739] gi|242375976|emb|CAQ30658.1| poly(A) polymerase I [Escherichia coli BL21(DE3)] Length = 465 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 46 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 101 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 102 VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 161 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 162 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 221 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 222 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 256 >gi|26246087|ref|NP_752126.1| poly(A) polymerase I [Escherichia coli CFT073] gi|82542743|ref|YP_406690.1| poly(A) polymerase I [Shigella boydii Sb227] gi|110640364|ref|YP_668092.1| poly(A) polymerase I [Escherichia coli 536] gi|161986592|ref|YP_309183.2| poly(A) polymerase I [Shigella sonnei Ss046] gi|162139816|ref|NP_308174.2| poly(A) polymerase I [Escherichia coli O157:H7 str. Sakai] gi|209917334|ref|YP_002291418.1| poly(A) polymerase I [Escherichia coli SE11] gi|218557086|ref|YP_002389999.1| poly(A) polymerase I [Escherichia coli S88] gi|218688020|ref|YP_002396232.1| poly(A) polymerase I [Escherichia coli ED1a] gi|218698564|ref|YP_002406193.1| poly(A) polymerase I [Escherichia coli IAI39] gi|237704302|ref|ZP_04534783.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA] gi|254037561|ref|ZP_04871638.1| poly(A) polymerase I [Escherichia sp. 1_1_43] gi|291280967|ref|YP_003497785.1| Poly(A) polymerase [Escherichia coli O55:H7 str. CB9615] gi|306815256|ref|ZP_07449405.1| poly(A) polymerase I [Escherichia coli NC101] gi|26106484|gb|AAN78670.1|AE016755_170 Poly(A) polymerase [Escherichia coli CFT073] gi|81244154|gb|ABB64862.1| poly(A) polymerase I [Shigella boydii Sb227] gi|110341956|gb|ABG68193.1| poly(A) polymerase [Escherichia coli 536] gi|209910593|dbj|BAG75667.1| poly(A) polymerase [Escherichia coli SE11] gi|218363855|emb|CAR01518.1| poly(A) polymerase I [Escherichia coli S88] gi|218368550|emb|CAR16287.1| poly(A) polymerase I [Escherichia coli IAI39] gi|218425584|emb|CAR06370.1| poly(A) polymerase I [Escherichia coli ED1a] gi|226840667|gb|EEH72669.1| poly(A) polymerase I [Escherichia sp. 1_1_43] gi|226902214|gb|EEH88473.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA] gi|290760840|gb|ADD54801.1| Poly(A) polymerase [Escherichia coli O55:H7 str. CB9615] gi|305850918|gb|EFM51373.1| poly(A) polymerase I [Escherichia coli NC101] gi|307551996|gb|ADN44771.1| poly(A) polymerase [Escherichia coli ABU 83972] gi|309700352|emb|CBI99640.1| poly(A) polymerase [Escherichia coli ETEC H10407] Length = 472 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|309787190|ref|ZP_07681802.1| poly(A) polymerase family protein [Shigella dysenteriae 1617] gi|81239683|gb|ABB60393.1| poly(A) polymerase I [Shigella dysenteriae Sd197] gi|308924768|gb|EFP70263.1| poly(A) polymerase family protein [Shigella dysenteriae 1617] Length = 454 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|95928272|ref|ZP_01311020.1| poly(A) polymerase [Desulfuromonas acetoxidans DSM 684] gi|95135543|gb|EAT17194.1| poly(A) polymerase [Desulfuromonas acetoxidans DSM 684] Length = 419 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 16/216 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L + + +VGG+VRD L+ +D D+ T P++V ++F R +I Sbjct: 21 DENSLKVLYRLRQHGYTAYLVGGSVRDLLLGRKPKDFDVGTDATPEQVRKLFRNCR--LI 78 Query: 72 PTSISYGTIKIICRKKYFDITTLR----SDLITDGR------YAKVVFTRDWKADSLRRD 121 I + R ++ T R D I D +A+ VF + D+ RRD Sbjct: 79 GRRFRLAHI-MFGRHCLIEVATFRRKPDPDEIPDAEEDGPNHFAENVFGTP-EEDAFRRD 136 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINAL+ D + ++DYVGGL DL + I+ IGD R ED +R+LR F A + Sbjct: 137 FTINALFYDIENYSIVDYVGGLQDLHDGIIRVIGDPDERFHEDPVRMLRALEFSARL-DF 195 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 ++ + A + + L S RI EI +L K Sbjct: 196 ELEQSIIPAMDRCGELLLTASPARIREEIMELFRHK 231 >gi|326329108|ref|ZP_08195437.1| tRNA adenylyltransferase [Nocardioidaceae bacterium Broad-1] gi|325953190|gb|EGD45201.1| tRNA adenylyltransferase [Nocardioidaceae bacterium Broad-1] Length = 483 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 115/264 (43%), Gaps = 19/264 (7%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 G + +VGG VRD+++ D+D T+ P+ +I + +GTI Sbjct: 39 GGHELALVGGPVRDAMLGRPHNDLDFTTSARPEETEKILRTWGEALWDMGRDFGTIGTRK 98 Query: 85 RKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGL 142 ++TT RS+ + D R V + D +RRDFT+NA+ G+ V+D GG+ Sbjct: 99 GPWQVEVTTYRSEAYSADSRKPAVAYGTSLADDLVRRDFTVNAMAVRLPGREVVDLYGGV 158 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL R ++ G +D LR++R RF A G + + + A + I+S+ Sbjct: 159 VDLATRMLRTPGTPEDSFSDDPLRMMRAARFAAQLG-FTVAPEVVAAMTDMASRISIISA 217 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQL 246 ER+ E+ KL+ A P + + G+ + + DV E +L L Sbjct: 218 ERVRDELVKLICAPFPRLGLTLLVETGLAELVLPELTALRMERDEHNRHKDVYEHTLTVL 277 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLI 270 Q I+ E D + RF L+ Sbjct: 278 EQSIDQEARLGGGPDFVSRFAALM 301 >gi|323964964|gb|EGB60430.1| poly(A) polymerase [Escherichia coli M863] gi|327255121|gb|EGE66724.1| poly(A) polymerase family protein [Escherichia coli STEC_7v] Length = 454 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|161485780|ref|NP_706091.3| poly(A) polymerase I [Shigella flexneri 2a str. 301] gi|161486546|ref|NP_835874.2| poly(A) polymerase I [Shigella flexneri 2a str. 2457T] gi|281599499|gb|ADA72483.1| poly(A) polymerase I [Shigella flexneri 2002017] Length = 472 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|160874351|ref|YP_001553667.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS195] gi|189081878|sp|A9L5J0|CCA_SHEB9 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|160859873|gb|ABX48407.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS195] gi|315266586|gb|ADT93439.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS678] Length = 416 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 18/215 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHPKN-----QQEYA 59 Query: 90 DITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R + G ++ + D LRRD TINA+ D++G + D G+ D+ R Sbjct: 60 LARTERKIALGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGIEDINAR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA +ED LR+LR RF A + ++ L+ I A L L++ER Sbjct: 120 LLRHVSDA---FVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELNALTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGG----IFKEIF 235 +W E++K L +P ++ G +F EIF Sbjct: 177 VWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIF 211 >gi|294139661|ref|YP_003555639.1| tRNA nucleotidyltransferase [Shewanella violacea DSS12] gi|293326130|dbj|BAJ00861.1| tRNA nucleotidyltransferase [Shewanella violacea DSS12] Length = 413 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 44/284 (15%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV---IPTSISYGTIKIICRKK 87 +VGGAVRDSL+ L ++D D ++ ++ +K ++V P + T +++ Sbjct: 5 LVGGAVRDSLLKLPIKDRDY--MVVGATQEQMLAKGFHQVGKDFPVFLHPDT-----QQE 57 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADS------LRRDFTINALYADQQGKVIDYVGG 141 Y R++ T Y FT AD LRRD TINA+ D G + D GG Sbjct: 58 Y---ALARTERKTGSGYGG--FTCHASADVTLEQDLLRRDLTINAIAQDDDGNLYDPYGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 +NDL N+ ++ + DA +ED LR+LR RF A + + ++ ++A+I L Sbjct: 113 VNDLNNKLLRHVSDA---FIEDPLRVLRVARFAARFHAQGFTIADETLTMMANISRSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ-------- 248 + L++ER++ E+NK L NP I + G K +F ++ + + Q +Q Sbjct: 170 EALTAERVFLELNKALSTDNPQIFIHVLKQCGALKVLFPEIHALFGVPQPAQWHPEIDTG 229 Query: 249 ---VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289 ++ EQ + D+ +RF L+ K +++ K LP+ Sbjct: 230 IHTLMVLEQAAKLTKDNSVRFAALVHDLGK----ALSPKEDLPK 269 >gi|218710491|ref|YP_002418112.1| poly(A) polymerase [Vibrio splendidus LGP32] gi|218323510|emb|CAV19687.1| Poly(A) polymerase [Vibrio splendidus LGP32] Length = 472 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 20/240 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LN + +VGG VRD L+ +D DIAT P+++ +F R + Sbjct: 58 NALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFRNCRLIGRRF 117 Query: 69 KVIPTSISYGTIKIICRKKYFDITT----LRSD---LITDGRYAKVVFTRDWKADSLRRD 121 ++ I++ + + + +SD L+ D Y V D+ RRD Sbjct: 118 RLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSDEGMLLRDNVYGNV------DEDAERRD 171 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF A + Sbjct: 172 FTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRFAAKL-DF 230 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +I+ D + LK + + R++ E KLL++ + L M +F+++F V E Sbjct: 231 DIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPSVAE 290 >gi|332968759|gb|EGK07809.1| poly(A) polymerase I [Psychrobacter sp. 1501(2011)] Length = 697 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I +++ L+K + IVGG VRD+L+ L+ +D D T P V +F K R ++I Sbjct: 20 IIEVIATLSKAGFDAYIVGGGVRDTLLGLNPKDFDAVTDARPHEVKDLFGK-RCRII--G 76 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + + ++ T R+ +DG + D D RRDF+INA+Y Sbjct: 77 RRFQLAHVYSGRDMIEVATFRAPPSGDAHTTSDGMIVRDNVWGDIHQDFARRDFSINAMY 136 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +G V D+ L+D++N+T++ +G A RI ED +R+LR RF A G Sbjct: 137 YEPLKGVVYDFCDALDDIKNKTLRLLGHAPLRIEEDPVRLLRALRFKAKLG 187 >gi|320179882|gb|EFW54826.1| Poly(A) polymerase [Shigella boydii ATCC 9905] Length = 435 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 16 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 71 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 72 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 131 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 132 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 191 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 192 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 226 >gi|218552724|ref|YP_002385637.1| poly(A) polymerase I [Escherichia coli IAI1] gi|218693609|ref|YP_002401276.1| poly(A) polymerase I [Escherichia coli 55989] gi|256020021|ref|ZP_05433886.1| poly(A) polymerase I [Shigella sp. D9] gi|293476802|ref|ZP_06665210.1| poly(A) polymerase [Escherichia coli B088] gi|332281167|ref|ZP_08393580.1| poly(A) polymerase I [Shigella sp. D9] gi|218350341|emb|CAU96024.1| poly(A) polymerase I [Escherichia coli 55989] gi|218359492|emb|CAQ97030.1| poly(A) polymerase I [Escherichia coli IAI1] gi|291321255|gb|EFE60697.1| poly(A) polymerase [Escherichia coli B088] gi|332103519|gb|EGJ06865.1| poly(A) polymerase I [Shigella sp. D9] Length = 472 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|253774829|ref|YP_003037660.1| poly(A) polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253325873|gb|ACT30475.1| poly(A) polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 472 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|330880377|gb|EGH14526.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4] Length = 407 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 29/163 (17%) Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPTSISYGTIKIICRKK 87 GG VRD ++N++ +D D+AT P++V F R +K++ I +G ++ Sbjct: 1 GGCVRDMMLNITPKDFDVATNATPEQVRAEFRNARIIGRRFKLV--HIHFG-------RE 51 Query: 88 YFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++ T R++ D GR + + D+ RRDFTINALY D Sbjct: 52 IIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTINALYYDPVS 111 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 +V+DY G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 112 ERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAA 154 >gi|326772861|ref|ZP_08232145.1| tRNA adenylyltransferase [Actinomyces viscosus C505] gi|326637493|gb|EGE38395.1| tRNA adenylyltransferase [Actinomyces viscosus C505] Length = 504 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 3/203 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + ++ D+D+ T+ P++ +I + ++GTI Sbjct: 61 ALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWDVGRAFGTIGARKGSTIV 120 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT R++ G R +V + D RRDFT+NA+ +++D GGL DL Sbjct: 121 EVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRLPDLELVDPCGGLADLNA 180 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ A +D LRI+R RF A G +++ D + A + L+I+S+ER+ + Sbjct: 181 GVLRTPVSAEQSFDDDPLRIMRAARFAAQLG-FDVEMDVMTAMEEMAPRLEIVSAERVRA 239 Query: 208 EINKLLEAKNPLNAIVHMYNGGI 230 E+ +LL + P + M + G+ Sbjct: 240 ELERLLISPWPRRGLELMVHTGV 262 >gi|121608734|ref|YP_996541.1| poly(A) polymerase [Verminephrobacter eiseniae EF01-2] gi|121553374|gb|ABM57523.1| poly(A) polymerase [Verminephrobacter eiseniae EF01-2] Length = 535 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 29/253 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D ++++ L + + IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 DRRAADVVATLKQAGFAAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKSLFRRAFIIGR 102 Query: 67 RYKVIPTSISYG----TIKIICRKKYFD-----------------ITTLRSDLITDGRYA 105 R++++ G I++ + Y D ++ ++ + GR Sbjct: 103 RFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAGQVSGNEKTSKAQLSGMQHAVDASGRVL 162 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + D+ RRDFTINA+Y D + V+DY GL D R +T++ IG+ R ED Sbjct: 163 RDNVWGPQDEDATRRDFTINAMYYDPVSQIVVDYHKGLQDARKKTLRMIGEPTLRYREDP 222 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASI--KAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +RI+R RF A D A+ +++ L + R++ E+ KLL+ + + I Sbjct: 223 VRIIRAVRFAAKLSALGFAIDAKTAAPLRQSQALLADVPQSRMFDEMLKLLQTGHAIATI 282 Query: 223 VHMYNGGIFKEIF 235 + G+ + I+ Sbjct: 283 EQLRKLGLTQGIY 295 >gi|193067681|ref|ZP_03048648.1| poly(A) polymerase [Escherichia coli E110019] gi|192959093|gb|EDV89529.1| poly(A) polymerase [Escherichia coli E110019] Length = 454 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|317482345|ref|ZP_07941365.1| tRNA adenylyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|316916225|gb|EFV37627.1| tRNA adenylyltransferase [Bifidobacterium sp. 12_1_47BFAA] Length = 471 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D ++ P++ I + + +GT+ + R+ Sbjct: 24 ALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFWDMGRKFGTLGAMRRRPD 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYV 139 ++TT RSD+ D R +V + + D RRDFT+NA+ D Q +D Sbjct: 84 GTEVKVEVTTYRSDMYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLQ--FVDPF 141 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG +DL ++ D +D LR++R RF A G + I D A + + I Sbjct: 142 GGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAPDAAEAITSMRDRIDI 200 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P + + G+ +F ++ + L Q+ + + VFE Sbjct: 201 VSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL-QIDEHHRHKDVFEHT 259 Query: 260 IDSLLRFIVLISWQD 274 + L R I L + D Sbjct: 260 MIVLERAIALETGPD 274 >gi|148828409|ref|YP_001293162.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae PittGG] gi|166233857|sp|A5UJ23|CCA_HAEIG RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|148719651|gb|ABR00779.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittGG] Length = 416 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 14/214 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D I P ++ + + K P ++ T +++Y Sbjct: 5 LVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G T + D +RRD TINA+ + G++ID GG DL NR Sbjct: 60 LARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A Y ++ L+A + L+ L++ER Sbjct: 120 ILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMAELAQSGELQHLTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E K L KNP ++ G +F ++ Sbjct: 177 VWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|157159375|ref|YP_001461313.1| poly(A) polymerase I [Escherichia coli E24377A] gi|157159609|ref|YP_001456927.1| poly(A) polymerase I [Escherichia coli HS] gi|260853354|ref|YP_003227245.1| poly(A) polymerase I [Escherichia coli O26:H11 str. 11368] gi|260866293|ref|YP_003232695.1| poly(A) polymerase I [Escherichia coli O111:H- str. 11128] gi|300825359|ref|ZP_07105437.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7] gi|300905560|ref|ZP_07123319.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1] gi|300923068|ref|ZP_07139133.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1] gi|301303752|ref|ZP_07209872.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1] gi|301330067|ref|ZP_07222743.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1] gi|331666385|ref|ZP_08367266.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA271] gi|331680723|ref|ZP_08381382.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H591] gi|157065289|gb|ABV04544.1| poly(A) polymerase [Escherichia coli HS] gi|157081405|gb|ABV21113.1| poly(A) polymerase [Escherichia coli E24377A] gi|257752003|dbj|BAI23505.1| poly(A) polymerase I [Escherichia coli O26:H11 str. 11368] gi|257762649|dbj|BAI34144.1| poly(A) polymerase I [Escherichia coli O111:H- str. 11128] gi|300402593|gb|EFJ86131.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1] gi|300420630|gb|EFK03941.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1] gi|300522172|gb|EFK43241.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7] gi|300840879|gb|EFK68639.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1] gi|300843913|gb|EFK71673.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1] gi|315254944|gb|EFU34912.1| polynucleotide adenylyltransferase [Escherichia coli MS 85-1] gi|323157782|gb|EFZ43885.1| poly(A) polymerase family protein [Escherichia coli EPECa14] gi|323176455|gb|EFZ62047.1| poly(A) polymerase family protein [Escherichia coli 1180] gi|331066596|gb|EGI38473.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA271] gi|331072186|gb|EGI43522.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H591] Length = 454 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|293418032|ref|ZP_06660654.1| poly(A) polymerase [Escherichia coli B185] gi|291430750|gb|EFF03748.1| poly(A) polymerase [Escherichia coli B185] Length = 472 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG- 227 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 +I + + L + R++ E KLL+A Sbjct: 228 MHISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|254499345|ref|ZP_05112016.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella drancourtii LLAP12] gi|254351450|gb|EET10314.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella drancourtii LLAP12] Length = 462 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 21/232 (9%) Query: 17 NILSLLNK---GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 N L +LN+ G ++ IVGG+VRD +++ + +D D+AT P+++ +F R Sbjct: 58 NALKVLNRLISGGFQAYIVGGSVRDLMLHKAPKDFDVATNATPNQIKNLFRNGRI----I 113 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRY---AKVVFTRD-----WKADSLRRDFTIN 125 + + ++ ++ ++ T RS D + + RD D+ RRDFTIN Sbjct: 114 GRRFKLVHVLFHREIIEVATFRSHEAVDESQQTNERGMLVRDNAFGSLDEDAWRRDFTIN 173 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNI 182 +LY + +ID+ GG+ D++++ I+ IGD R ED +R+LR RF A H+ N+ Sbjct: 174 SLYYNITDSTIIDFTGGVKDVQDKLIRMIGDPVTRYKEDPVRMLRAVRFSAKLHF---NL 230 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + + +SS R++ E+ KL + N + G+F+ + Sbjct: 231 APETEAPFPDISYLITHVSSSRLFDEMTKLYQCGNAETVQKLLLQYGLFQHL 282 >gi|238918730|ref|YP_002932244.1| poly(A) polymerase I [Edwardsiella ictaluri 93-146] gi|238868298|gb|ACR68009.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 456 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 14/234 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 ENALKVLYRLNKSGYEAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRNCRLVGRR 93 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTI 124 +++ I++ + + + ++ G+ ++ + + D+ RRDFTI Sbjct: 94 FRLAHVMFGPEIIEVATFRGHHEHANEGKNIAQQGKNGMLLRDNVYGNIEEDAQRRDFTI 153 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 N+LY AD V DY GGLNDL I+ IGD R ED +R+LR RF A + + Sbjct: 154 NSLYYSVAD--FSVRDYTGGLNDLHAGQIRLIGDPETRYREDPVRMLRAVRFAAKL-QMS 210 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I+ + L+ + + R++ E KLL+A + + +F+ +F Sbjct: 211 INPETAAPIAHLASLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLFQPLF 264 >gi|253999870|ref|YP_003051933.1| poly(A) polymerase [Methylovorus sp. SIP3-4] gi|253986549|gb|ACT51406.1| poly(A) polymerase [Methylovorus sp. SIP3-4] Length = 455 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 15/217 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I L K ++ IVGGAVRD L+ +D D+AT P++V R+F ++R Sbjct: 50 IKTTEGLQKAGFEAFIVGGAVRDLLLKKRPKDFDVATNATPEQVNRVFRRSRI----IGR 105 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT----RD-----WKADSLRRDFTINA 126 + + ++ + +++T R + D AK+ + RD + D+LRRDFT NA Sbjct: 106 RFRLVHVLFGDETVEVSTFRGSHLNDDGDAKIADSGRILRDNVFGSQEDDALRRDFTANA 165 Query: 127 LYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D + V+D+ G D++ ++ IGD R ED +R+LR R A G K +D Sbjct: 166 LYYDPSSEDVLDFHHGYEDIQAGILRMIGDPVTRYREDPVRMLRAIRLSAKLGLK-LDKA 224 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 K L+ + + R++ E+ KL + + + ++ Sbjct: 225 TEAPIPKLADELQEVPASRLFDEMLKLFLSGHAMESV 261 >gi|306817479|ref|ZP_07451223.1| tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35239] gi|304649703|gb|EFM46984.1| tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35239] Length = 486 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 3/198 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ + D+D+ T+ P+ + + V ++GTI F Sbjct: 35 ALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWDVGRNFGTIGARKGDAIF 94 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 +ITT R D D R V F + D RRDFT+NA+ + ++D GG DL Sbjct: 95 EITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRLPEMTLVDPTGGERDLEQ 154 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + ++ +D LRI+R RF A G +ID L A ++ L+I+S ERI + Sbjct: 155 QMLRTPISPEESFNDDPLRIMRAARFAAQLG-FDIDYSVLTAMQDMRERLQIVSRERIQA 213 Query: 208 EINKLLEAKNPLNAIVHM 225 E ++LL + P + M Sbjct: 214 EFSRLLVSPWPRRGLELM 231 >gi|222111590|ref|YP_002553854.1| poly(a) polymerase [Acidovorax ebreus TPSY] gi|221731034|gb|ACM33854.1| poly(A) polymerase [Acidovorax ebreus TPSY] Length = 531 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 31/258 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 44 DRRASDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKSLFRRAFIIGK 103 Query: 67 RYKVIPTSISYG----TIKIICRKKYFD-----------------ITTLRSDLITDGRYA 105 R++++ G I++ + Y D + + + GR Sbjct: 104 RFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVGGNEKTSKAQLAGMHHAVDASGRVL 163 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD R ED Sbjct: 164 RDNVWGPQDEDATRRDFTVNAMYYDPETEVVVDFHKGIEDAKKRVLRMIGDPATRYREDP 223 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +RI+R RF A + A ++ + L+ + R++ E+ KLL+ + L +I Sbjct: 224 VRIIRAVRFAAKLSPLGFALEPKTAKPLVECEPLLREVPQSRLFDEMLKLLQTGHALASI 283 Query: 223 VHMYNGGIFKEIF--LDV 238 + + G+ I+ LDV Sbjct: 284 AQLKSLGLATGIYPLLDV 301 >gi|319897274|ref|YP_004135469.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3031] gi|329124006|ref|ZP_08252553.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] gi|317432778|emb|CBY81143.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3031] gi|327467431|gb|EGF12929.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] Length = 416 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L++L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLDLPVKDRDWIVVGTDPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E K L KNP ++ G +F ++ Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|320197403|gb|EFW72017.1| Poly(A) polymerase [Escherichia coli WV_060327] Length = 454 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISQETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|254672376|emb|CBA05629.1| poly(A) polymerase [Neisseria meningitidis alpha275] Length = 362 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 103/202 (50%), Gaps = 10/202 (4%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +++D+ G+ D+ R + IGDA R ED +RILR R + G ++ + Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLG-FDLSEETAAPIA 217 Query: 192 KAKKGLKILSSERIWSEINKLL 213 ++ LK R++ EI KLL Sbjct: 218 ESICRLKHEPVARLFDEIMKLL 239 >gi|254428702|ref|ZP_05042409.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881] gi|196194871|gb|EDX89830.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881] Length = 432 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 126/258 (48%), Gaps = 27/258 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 +++L L+KG ++ +VGG +RD L +D D++T P++V R+F ++R Sbjct: 19 LDVLYGLHKGGFEAYLVGGCLRDILCGREPKDFDVSTNATPEQVNRLFKRSRI----IGR 74 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGR----------YAKVVFTRDW---KADSLRRDF 122 + + + ++ +++T R+ D + V+ W + D+LRRDF Sbjct: 75 RFQIVHVRFGREVIEVSTFRAKASDDNQDQNKHHAHEETGLVLRDNTWGSIEEDALRRDF 134 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINALY + + D+VG + D+ I+ IG+ R ED +R+LR RF A G Sbjct: 135 TINALYYNIADFTLHDFVGSMGDIDQEVIRLIGNPEQRFREDPVRMLRAARFAAKLGFHI 194 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +S A+ L++ ++ R++ E+ KL + + + + G+F+ +F + Q Sbjct: 195 EESTARRIPDMAELLLQVPAA-RLFDEVLKLFLSGHARASYEQLQELGLFRFLFPETQ-- 251 Query: 242 SLDQLSQVIEAEQVFEWK 259 Q +E++Q W+ Sbjct: 252 ------QALESDQGEIWE 263 >gi|308389017|gb|ADO31337.1| putative poly(A) polymerase [Neisseria meningitidis alpha710] gi|325129986|gb|EGC52781.1| poly(A) polymerase [Neisseria meningitidis OX99.30304] gi|325135941|gb|EGC58551.1| poly(A) polymerase [Neisseria meningitidis M0579] gi|325202368|gb|ADY97822.1| poly(A) polymerase [Neisseria meningitidis M01-240149] gi|325207880|gb|ADZ03332.1| poly(A) polymerase [Neisseria meningitidis NZ-05/33] Length = 453 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +++D+ G+ D+ R + IGDA R ED +RILR R + G Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLG 205 >gi|227876518|ref|ZP_03994630.1| possible tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35243] gi|227843059|gb|EEJ53256.1| possible tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35243] Length = 486 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 3/214 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ + D+D+ T+ P+ + + V ++GTI F Sbjct: 35 ALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWDVGRNFGTIGARKGDAIF 94 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 +ITT R D D R V F + D RRDFT+NA+ + ++D GG DL Sbjct: 95 EITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRLPEMTLVDPTGGERDLEQ 154 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + ++ +D LRI+R RF A G +ID L A ++ L+I+S ERI + Sbjct: 155 QMLRTPISPEESFNDDPLRIMRAARFAAQLG-FDIDYSVLTAMQDMRERLQIVSRERIQA 213 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E ++LL + P + M + ++ ++ ++ Sbjct: 214 EFSRLLVSPWPRRGLELMVYTDVAAQVVPELMDL 247 >gi|320536493|ref|ZP_08036527.1| poly(A) polymerase [Treponema phagedenis F0421] gi|320146702|gb|EFW38284.1| poly(A) polymerase [Treponema phagedenis F0421] Length = 399 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 32/220 (14%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D++ + I+ L+ + IVGGAVRD L+ +D DIAT+ P ++ ++F +R Sbjct: 33 DAEALKIIQTLHSAGYEGFIVGGAVRDLLLGRIPKDFDIATSAEPSKIKKLFRNSRI--- 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + + I K ++I+T RS I DG T + D RRDFTINALY D Sbjct: 90 -IGKRFRLVHIFYGPKIYEISTFRS--IEDGSVGNKFGT--IEEDVQRRDFTINALYYDP 144 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +IDYVGGL+DLR ++ I + ED +R+LR ++ S Sbjct: 145 IKNLIIDYVGGLHDLRKNRLRAIIPLKNIFSEDPVRMLRAIKY----------------S 188 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNP------LNAIVH 224 I AK + L S R+ + + LLE +P LN I H Sbjct: 189 ILAKAKIPFLLSCRLHRDTS-LLEYCSPSRLTEELNKIFH 227 >gi|209696020|ref|YP_002263950.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio salmonicida LFI1238] gi|208009973|emb|CAQ80291.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio salmonicida LFI1238] Length = 441 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 24/247 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D+ L + L N G D + +VGG VRD ++ +D DIAT P+++ ++F Sbjct: 13 ISRKDLSDNALKVLYRLSNAGYD-AYLVGGGVRDIILGQEPKDFDIATNATPEQIKKLFR 71 Query: 65 KTR--------------YKVIPTSISYGTIKII-CRKKYFDITTLRSDLITDGRYAKVVF 109 R VI + G K KK + L+ D Y V Sbjct: 72 NCRLIGRRFRLAHILFGRDVIEVATFRGHHKEEESEKKNISSQSKEGMLLRDNVYGTV-- 129 Query: 110 TRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTINA+Y + I DY G+ DL+N ++ IGD R ED +R+L Sbjct: 130 ----EEDAQRRDFTINAMYYNIADYSIHDYANGIEDLKNGVVRLIGDPETRYREDPVRML 185 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + ++ L+ + + R++ E KLL+A LN + + Sbjct: 186 RAVRFAAKL-DMTICNKTAEPMVELSPLLRDIPAARLFEESLKLLQAGKGLNTYLMLRKF 244 Query: 229 GIFKEIF 235 +F+++F Sbjct: 245 NLFQQLF 251 >gi|269977721|ref|ZP_06184681.1| tRNA adenylyltransferase [Mobiluncus mulieris 28-1] gi|269934025|gb|EEZ90599.1| tRNA adenylyltransferase [Mobiluncus mulieris 28-1] Length = 486 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 3/198 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ + D+D+ T+ P+ + + V ++GTI F Sbjct: 35 ALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWDVGRNFGTIGARKGDAIF 94 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 +ITT R D D R V F + D RRDFT+NA+ + ++D GG DL Sbjct: 95 EITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRLPEMTLVDPTGGERDLEQ 154 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + ++ +D LRI+R RF A G +ID L A ++ L+I+S ERI + Sbjct: 155 QMLRTPISPEESFNDDPLRIMRAARFAAQLG-FDIDYSVLTAMQDMRERLQIVSRERIQA 213 Query: 208 EINKLLEAKNPLNAIVHM 225 E ++LL + P + M Sbjct: 214 EFSRLLVSPWPRRGLELM 231 >gi|161869779|ref|YP_001598947.1| poly(A) polymerase [Neisseria meningitidis 053442] gi|161595332|gb|ABX72992.1| poly(A) polymerase [Neisseria meningitidis 053442] Length = 453 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +++D+ G+ D+ R + IGDA R ED +RILR R + G Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLG 205 >gi|318058987|ref|ZP_07977710.1| RNA nucleotidyltransferase [Streptomyces sp. SA3_actG] gi|318078637|ref|ZP_07985969.1| RNA nucleotidyltransferase [Streptomyces sp. SA3_actF] gi|333025736|ref|ZP_08453800.1| putative RNA nucleotidyltransferase [Streptomyces sp. Tu6071] gi|332745588|gb|EGJ76029.1| putative RNA nucleotidyltransferase [Streptomyces sp. Tu6071] Length = 475 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 15/227 (6%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +VGG+VRD+L+ D+D T P+ V+ + V I++GT+ C+K Sbjct: 31 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVWEVGIAFGTVG--CQKAAR 88 Query: 89 ---------FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA-DQQGKVID 137 ++TT RS+ R +V + + D +RRDFT+NA+ + + +D Sbjct: 89 VGEEEQSFQIEVTTYRSEAYDRSSRKPQVSYGDSIEEDLVRRDFTVNAMAVFLPEKRFVD 148 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL+DL + ++ G +D LR+LR RF A + + + + A + + Sbjct: 149 PHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPEVVAAMTAMAERI 207 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I+S+ER+ E+NKLL + +P+ + + + G+ + ++ + L+ Sbjct: 208 DIVSAERVQGELNKLLLSAHPVKGLRLLVDTGLADRVLPELPALRLE 254 >gi|254804714|ref|YP_003082935.1| poly(A) polymerase [Neisseria meningitidis alpha14] gi|254668256|emb|CBA05110.1| poly(A) polymerase [Neisseria meningitidis alpha14] Length = 453 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +++D+ G+ D+ R + IGDA R ED +RILR R G Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG 205 >gi|297539331|ref|YP_003675100.1| poly(A) polymerase [Methylotenera sp. 301] gi|297258678|gb|ADI30523.1| poly(A) polymerase [Methylotenera sp. 301] Length = 486 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 30/252 (11%) Query: 2 VSIVQHKWFH-DSDLINILSL-----LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTIL 55 +++ HK D DL++ +L L+K ++ IVGGAVRD L+N + +D D+AT Sbjct: 54 ATVIAHKTHKFDRDLLSNAALKTTEGLHKAGFEAYIVGGAVRDLLLNRTPKDFDVATDAT 113 Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR-SDLITDGRYAKVVFTRDWK 114 P+ V RIF ++R + + ++ + +++T R S L T+G T D Sbjct: 114 PEEVNRIFRRSRI----IGKRFRLVHVLFGDETIEVSTFRGSHLETEGNPKGDSKTTDSG 169 Query: 115 A------------DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 D++RRDFT NALY + + V+D+ G D++ ++ IG R Sbjct: 170 RIIRDNVFGSIVDDAVRRDFTANALYYNPASQEVLDFHHGYTDIKAGVLRMIGKPETRYA 229 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR R A G K ID K L+ + R++ E+ KL + + + + Sbjct: 230 EDPVRMLRAVRLSAKLGLK-IDQATQAPIAKMADLLQDVPPSRLFDEMLKLFLSGHAMES 288 Query: 222 IV-----HMYNG 228 + H+++G Sbjct: 289 VSALREQHLHHG 300 >gi|327392774|dbj|BAK10196.1| poly(A) polymerase PcnB [Pantoea ananatis AJ13355] Length = 443 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRLVGRR 77 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + I D R + RD + D+ RRD Sbjct: 78 FRLAHVMFGPEVIEVATFRGHHQIEETSDDHNNSQRAQSGMLLRDNIFGSIEDDAQRRDL 137 Query: 123 TINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY V DYVGGLNDL+ I+ IGD R ED +R+LR RF A + Sbjct: 138 TINSLYYSVADFSVRDYVGGLNDLQQGIIRLIGDPETRYREDPVRMLRVARFAAKLNMR- 196 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L+ + + R++ E KLL+A + + + +F+ +F Sbjct: 197 IAPETAEPIPRLASLLRDVPAARLFEESLKLLQAGYGYSTWLKLCEYQLFQPLF 250 >gi|302520496|ref|ZP_07272838.1| tRNA adenylyltransferase [Streptomyces sp. SPB78] gi|302429391|gb|EFL01207.1| tRNA adenylyltransferase [Streptomyces sp. SPB78] Length = 475 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 15/227 (6%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +VGG+VRD+L+ D+D T P+ V+ + V I++GT+ C+K Sbjct: 31 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVWEVGIAFGTVG--CQKAAR 88 Query: 89 ---------FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA-DQQGKVID 137 ++TT RS+ R +V + + D +RRDFT+NA+ + + +D Sbjct: 89 VGEEEQSFQIEVTTYRSEAYDRSSRKPQVSYGDSIEEDLVRRDFTVNAMAVFLPEKRFVD 148 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL+DL + ++ G +D LR+LR RF A + + + + A + + Sbjct: 149 PHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPEVVAAMTAMAERI 207 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I+S+ER+ E+NKLL + +P+ + + + G+ + ++ + L+ Sbjct: 208 DIVSAERVQGELNKLLLSAHPVKGLRLLVDTGLADRVLPELPALRLE 254 >gi|121595306|ref|YP_987202.1| poly(A) polymerase [Acidovorax sp. JS42] gi|120607386|gb|ABM43126.1| poly(A) polymerase [Acidovorax sp. JS42] Length = 531 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 31/258 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 44 DRRASDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKSLFRRAFIIGK 103 Query: 67 RYKVIPTSISYG----TIKIICRKKYFD-----------------ITTLRSDLITDGRYA 105 R++++ G I++ + Y D + + + GR Sbjct: 104 RFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVGGNEKTSKAQLAGMHHAVDASGRVL 163 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD R ED Sbjct: 164 RDNVWGPQDEDATRRDFTVNAMYYDPETEVVVDFHKGIEDAKKRVLRMIGDPATRYREDP 223 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +RI+R RF A + A ++ + L+ + R++ E+ KLL+ + L +I Sbjct: 224 VRIIRAVRFAAKLSPLGFALEPKTAKPLVECEPLLREVPQSRLFDEMLKLLQTGHALASI 283 Query: 223 VHMYNGGIFKEIF--LDV 238 + + G+ I+ LDV Sbjct: 284 AQLKSLGLATGIYPLLDV 301 >gi|90580267|ref|ZP_01236074.1| putative polyA polymerase [Vibrio angustum S14] gi|90438569|gb|EAS63753.1| putative polyA polymerase [Vibrio angustum S14] Length = 447 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 22/243 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R Sbjct: 18 ENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFRNCRLIGRR 77 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA------------ 115 +++ I++ + + +++ D + + +R + Sbjct: 78 FRLAHILFGRDIIEVATFRGHHSDAPIQATAPKDSKQKPQISSRSQEGMLLRDNVYGTIE 137 Query: 116 -DSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINALY + V DY G++DL NR ++ +GD R ED +R+LR RF Sbjct: 138 EDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYREDPVRMLRAVRF 197 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + ID A IK L + + S R++ E KLL++ L + +F+ Sbjct: 198 AVKL-DMEIDP-ATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLETYRMLREYNLFQ 255 Query: 233 EIF 235 ++F Sbjct: 256 QLF 258 >gi|69145904|gb|AAZ03499.1| poly(A) polymerase [Photobacterium angustum S14] Length = 480 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 22/243 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R Sbjct: 51 ENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFRNCRLIGRR 110 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA------------ 115 +++ I++ + + +++ D + + +R + Sbjct: 111 FRLAHILFGRDIIEVATFRGHHSDAPIQATAPKDSKQKPQISSRSQEGMLLRDNVYGTIE 170 Query: 116 -DSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINALY + V DY G++DL NR ++ +GD R ED +R+LR RF Sbjct: 171 EDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYREDPVRMLRAVRF 230 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + ID A IK L + + S R++ E KLL++ L + +F+ Sbjct: 231 AVKL-DMEIDP-ATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLETYRMLREYNLFQ 288 Query: 233 EIF 235 ++F Sbjct: 289 QLF 291 >gi|325127938|gb|EGC50840.1| poly(A) polymerase family protein [Neisseria meningitidis N1568] Length = 374 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGA+RD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGARFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +++D+ G+ D+ R + IGDA R ED +RILR R G Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG 205 >gi|184201989|ref|YP_001856196.1| tRNA nucleotidyltransferase [Kocuria rhizophila DC2201] gi|183582219|dbj|BAG30690.1| tRNA nucleotidyltransferase [Kocuria rhizophila DC2201] Length = 478 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 9/234 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIP 72 + + L + + +VGG VRD L+ D+D T PD+ V+R ++ +++ Sbjct: 19 LELGRLFERAGHELSLVGGPVRDLLLGREALDLDFTTDASPDQTLAVIRDWADAHWEI-- 76 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GTI + ++TT R++ G R V F D D RRDFT+NA+ Sbjct: 77 -GRDFGTIGMRKAGMQLEVTTYRAEAYDPGSRKPTVAFGDDLTEDLRRRDFTVNAMALRL 135 Query: 132 QG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +++D GG+ DL ++ G +D LR++R RF + G + + Sbjct: 136 PGLELVDPFGGIRDLHAGVLRTPGTPEDSFTDDPLRMMRAARFTSQLGLTVAEPVREAMT 195 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 A++ ++I+S+ER+ E+ KL+ +P I M + G+ + + +V + L+ Sbjct: 196 AMAQR-IEIVSAERVREELVKLVCGAHPRRGIELMVDTGLAQIVLPEVPALQLE 248 >gi|120597644|ref|YP_962218.1| poly(A) polymerase [Shewanella sp. W3-18-1] gi|146294217|ref|YP_001184641.1| poly(A) polymerase [Shewanella putrefaciens CN-32] gi|120557737|gb|ABM23664.1| poly(A) polymerase [Shewanella sp. W3-18-1] gi|145565907|gb|ABP76842.1| poly(A) polymerase [Shewanella putrefaciens CN-32] Length = 494 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 18/237 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK K+ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 77 NALKVLYRLNKSGFKAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV----V 132 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ T R S +GR + + D+ RRDFT Sbjct: 133 GRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRDFT 192 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GG+ DL+ T++ IGD R ED +R+LR R FA NI Sbjct: 193 VNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVR-FATKLSMNI 251 Query: 183 DSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + D IK L + + R++ E+ KL A L M +F +F V Sbjct: 252 E-DVTAKPIKQLAPLLTDIPAARMYEEVLKLFFAGKALANFEMMQEYKLFAPLFPQV 307 >gi|291616321|ref|YP_003519063.1| PcnB [Pantoea ananatis LMG 20103] gi|291151351|gb|ADD75935.1| PcnB [Pantoea ananatis LMG 20103] Length = 479 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R Sbjct: 54 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRLVGRR 113 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + I D R + RD + D+ RRD Sbjct: 114 FRLAHVMFGPEVIEVATFRGHHQIEETSDDHNNSQRAQSGMLLRDNIFGSIEDDAQRRDL 173 Query: 123 TINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY V DYVGGLNDL+ I+ IGD R ED +R+LR RF A + Sbjct: 174 TINSLYYSVADFSVRDYVGGLNDLQQGIIRLIGDPETRYREDPVRMLRVARFAAKLNMR- 232 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L+ + + R++ E KLL+A + + + +F+ +F Sbjct: 233 IAPETAEPIPRLASLLRDVPAARLFEESLKLLQAGYGYSTWLKLCEYQLFQPLF 286 >gi|261392805|emb|CAX50386.1| poly(A) polymerase (PAP; plasmid copy number protein) [Neisseria meningitidis 8013] Length = 453 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 16/205 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV 102 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + + D++RRDFT NALY D Sbjct: 103 HVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSI------EEDAMRRDFTCNALYYD 156 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 ++ +++D+ G+ D+ + IGDA R ED +RILR R G E + ++ + Sbjct: 157 PEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPI 216 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 217 AESICR--LKHEPVARLFDEIMKLL 239 >gi|325066341|ref|ZP_08125014.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Actinomyces oris K20] Length = 459 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 3/203 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + ++ D+D+ T+ P++ +I + ++GTI Sbjct: 16 ALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWDVGRAFGTIGARKGSTIV 75 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT R++ G R +V + D RRDFT+NA+ +++D GGL DL Sbjct: 76 EVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRLPDLELVDPCGGLADLNA 135 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ A +D LRI+R RF A G +++ D + A + L+I+S+ER+ + Sbjct: 136 GILRTPVSAEQSFDDDPLRIMRAARFAAQLG-FDVEMDVMTAMEEMAPRLEIVSAERVRA 194 Query: 208 EINKLLEAKNPLNAIVHMYNGGI 230 E+ +LL + P + M + G+ Sbjct: 195 ELERLLISPWPRRGLELMVHTGV 217 >gi|222616187|gb|EEE52319.1| hypothetical protein OsJ_34338 [Oryza sativa Japonica Group] Length = 459 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 16/193 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N +D D+AT P++V ++F R + ++ ++ + Sbjct: 60 LVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRL----IGRRFRLAHVVFGREIIE 115 Query: 91 ITTLRS---DLITDGRYAKVVFTRD-----WKADSLRRDFTINALY-ADQQGKVIDYVGG 141 + T R+ D D + RD + D++RRDFT NALY A + V DY GG Sbjct: 116 VATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIRRDFTCNALYYAIEDFSVRDYTGG 175 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 D++ R +K IGD R ED +R+LR R A G + +G A I G L Sbjct: 176 FEDVQARLMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQI--EEGTAAPIPHLAGLLNEA 233 Query: 201 SSERIWSEINKLL 213 + R++ E+ KL Sbjct: 234 APARLFEEVLKLF 246 >gi|113969072|ref|YP_732865.1| poly(A) polymerase [Shewanella sp. MR-4] gi|113883756|gb|ABI37808.1| poly(A) polymerase [Shewanella sp. MR-4] Length = 435 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 16/237 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 15 ENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV---- 70 Query: 73 TSISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDF 122 + I+ + ++ T R S +GR + + D+ RRDF Sbjct: 71 VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRDF 130 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NALY D + Y GG++DL+ T++ IGD R ED +R+LR R FA Sbjct: 131 TVNALYYDISDYSIRSYGGGMDDLKAGTLRLIGDPETRYREDPVRMLRAVR-FATKLSMT 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ID + LK + + R++ E+ KL A + M +F+ +F V Sbjct: 190 IDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFEPLFPQV 246 >gi|325206323|gb|ADZ01776.1| poly(A) polymerase [Neisseria meningitidis M04-240196] Length = 453 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + +++D+ G+ D+ R + IGDA R ED +RILR R G Sbjct: 159 KEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG 205 >gi|288942459|ref|YP_003444699.1| poly(A) polymerase [Allochromatium vinosum DSM 180] gi|288897831|gb|ADC63667.1| poly(A) polymerase [Allochromatium vinosum DSM 180] Length = 445 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 16/231 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ +VGG VRD L+ +D D+AT P++V ++F R Sbjct: 36 LRVLYRLRQENFQAHLVGGGVRDLLLGHEPKDFDVATDATPEQVRQVFRNCRL----IGR 91 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKV-----VFTRD-----WKADSLRRDFTIN 125 + + + ++ T R DG A + RD + D+LRRDFTIN Sbjct: 92 RFRLAHVHFGRDIIEVATFRGSGSDDGEDADRQMRDGLIVRDNIYGSIEEDALRRDFTIN 151 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +IDY GG++DLR ++ IGD R ED +R+LR RF G I+ Sbjct: 152 ALYYDIADFALIDYAGGIDDLRAGRLRLIGDPVKRYREDPVRMLRAVRFACKLG-FTIEP 210 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + L+ + + R++ E+ KL + L + + G+F +F Sbjct: 211 ATERPLFELGHLLRDIPAARLFDELLKLFHSGYGLEVFEKLRHYGLFGHLF 261 >gi|294635067|ref|ZP_06713582.1| polyA polymerase [Edwardsiella tarda ATCC 23685] gi|291091532|gb|EFE24093.1| polyA polymerase [Edwardsiella tarda ATCC 23685] Length = 457 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 14/234 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK + +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 ENALKVLYRLNKSGFDAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRNCRLVGRR 93 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTI 124 +++ I++ + + + ++ G+ ++ + + D+ RRDFTI Sbjct: 94 FRLAHVMFGPEIIEVATFRGHHEHADEGKNISQQGKNGMLLRDNVYGNIEEDAQRRDFTI 153 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 N+LY AD V DY GGLNDLR I+ IGD R ED +R+LR RF A + Sbjct: 154 NSLYYSVAD--FTVRDYTGGLNDLRAGLIRLIGDPETRYREDPVRMLRAVRFAAKL-RMD 210 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L+ + + R++ E KLL+A + + +F+ +F Sbjct: 211 ISPETAAPIARLAPLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLFQPLF 264 >gi|157147427|ref|YP_001454746.1| poly(A) polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084632|gb|ABV14310.1| hypothetical protein CKO_03226 [Citrobacter koseri ATCC BAA-895] Length = 454 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 18/236 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNDSDRATSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A + Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMQDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL-D 209 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E KLL+A + +F+ +F Sbjct: 210 MRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGFETYKKLREYSLFQPLF 265 >gi|119964423|ref|YP_949860.1| RNA nucleotidyltransferase [Arthrobacter aurescens TC1] gi|119951282|gb|ABM10193.1| putative RNA nucleotidyltransferase [Arthrobacter aurescens TC1] Length = 488 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 3/217 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + + D+D T PD+ + + K ++GTI + Sbjct: 33 SLVGGPVRDLFLGRTSPDLDFTTDATPDQTISVIKKWADNFWEIGRAFGTIGMKKSGFQI 92 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 +ITT R++ D R V F D LRRDFTINA+ +++D GG+ DL Sbjct: 93 EITTYRAEAYDPDSRKPVVAFGSSLTDDLLRRDFTINAMALRLPSLELVDPFGGVRDLHA 152 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + G +D LR++R RF + G D L S A + +KI+S+ER+ Sbjct: 153 SELATPGAPEASFSDDPLRMMRAARFASQLGVSVHDDVRLAMSQMADR-IKIISAERVRE 211 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KL+ +P I + + G+ + + +V + L+ Sbjct: 212 ELVKLINGTHPRVGIDLLVDTGLAEFVLPEVSALRLE 248 >gi|319427561|gb|ADV55635.1| poly(A) polymerase [Shewanella putrefaciens 200] Length = 494 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 18/237 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK K+ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 77 NALKVLYRLNKSGFKAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV----V 132 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ T R S +GR + + D+ RRDFT Sbjct: 133 GRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRDFT 192 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GG+ DL+ T++ IGD R ED +R+LR R FA NI Sbjct: 193 VNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVR-FATKLSMNI 251 Query: 183 DSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + D IK L + + R++ E+ KL A L M +F +F V Sbjct: 252 E-DVTAKPIKQLAPLLTDIPAARMYEEVLKLFFAGKALANFEMMQEYKLFAPLFPQV 307 >gi|126173394|ref|YP_001049543.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS155] gi|166233876|sp|A3D1R1|CCA_SHEB5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|125996599|gb|ABN60674.1| metal dependent phosphohydrolase [Shewanella baltica OS155] Length = 416 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 18/215 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHPKN-----QQEYA 59 Query: 90 DITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R L G + D LRRD TINA+ D++G + D G+ D+ R Sbjct: 60 LARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGIEDINAR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA +ED LR+LR RF A + ++ L+ I A L L++ER Sbjct: 120 LLRHVSDA---FVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELNALTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGG----IFKEIF 235 +W E++K L +P ++ G +F EIF Sbjct: 177 VWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIF 211 >gi|147117|gb|AAA24303.1| plasmid copy number protein [Escherichia coli] Length = 410 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 18/207 (8%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 LNK ++ +VGG VRD L+ +D D+ T P++V ++F R + Sbjct: 4 LNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVAKLFRNCRL----VGRRFRLAH 59 Query: 82 IICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRRDFTINALYA 129 ++ + ++ T R SD T R + RD + D+ RRDFTIN+LY Sbjct: 60 VMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYY 119 Query: 130 DQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G + I + Sbjct: 120 SVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMR-ISPETAE 178 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEA 215 + L + R++ E KLL+A Sbjct: 179 PIPRLATLLNDIPPARLFEESLKLLQA 205 >gi|146283614|ref|YP_001173767.1| poly(A) polymerase [Pseudomonas stutzeri A1501] gi|145571819|gb|ABP80925.1| poly(A) polymerase [Pseudomonas stutzeri A1501] Length = 466 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 19/175 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L + ++ +VGG VRD L+ L+ +D D+AT+ P++V F R VI Sbjct: 46 VSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQVRAEFRNAR--VI--GR 101 Query: 76 SYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKA-------------DSLRRD 121 + + + ++ ++ T R++ D A + +R+ D+ RRD Sbjct: 102 RFKLVHVHFGREIIEVATFRANHPEEDDEDASQLASRNESGRILRDNVYGTLEDDAQRRD 161 Query: 122 FTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 FTINALY D +++D+ G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 162 FTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAA 216 >gi|89074127|ref|ZP_01160626.1| putative polyA polymerase [Photobacterium sp. SKA34] gi|89050063|gb|EAR55589.1| putative polyA polymerase [Photobacterium sp. SKA34] Length = 447 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 22/243 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R Sbjct: 18 ENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFRNCRLIGRR 77 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA------------ 115 +++ I++ + + +++ D + + +R + Sbjct: 78 FRLAHILFGRDIIEVATFRGHHSDAPVQTTTPKDSKQKPQISSRSQEGMLLRDNVYGTIE 137 Query: 116 -DSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINALY + V DY G++DL NR ++ +GD R ED +R+LR RF Sbjct: 138 EDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYREDPVRMLRAVRF 197 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + ID A IK L + + S R++ E KLL++ L + +F+ Sbjct: 198 AVKL-DMEIDP-ATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLETYRMLREYNLFQ 255 Query: 233 EIF 235 ++F Sbjct: 256 QLF 258 >gi|171057366|ref|YP_001789715.1| poly(A) polymerase [Leptothrix cholodnii SP-6] gi|170774811|gb|ACB32950.1| poly(A) polymerase [Leptothrix cholodnii SP-6] Length = 498 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 28/251 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D + +++ L ++ IVGGAVRD L+ +D D+AT P++V F + Sbjct: 40 DDRAVKVVTTLQDAGFEAYIVGGAVRDLLLGHRPKDFDVATNATPEQVKSHFRRAFIIGR 99 Query: 67 RYKVIPTSISYG----TIKIICRKKYFDITTLR--------SDLITDGRY------AKVV 108 R++++ G I++ + D + S G+ +V+ Sbjct: 100 RFRIVHVVHGRGREHEVIEVSTFRAKPDASAAEQVSGNEKTSKAALQGKSHVVDAEGRVL 159 Query: 109 FTRDWKA---DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 W D+ RRDFT+NALY D +G+ V+DY G+ D + R ++ IG+ R ED Sbjct: 160 RDNVWGPQIDDAARRDFTVNALYYDPRGQIVVDYHNGIADAKKRVLRMIGEPEARYREDP 219 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 +RI+R RF A G + I+ I+ L + + R++ E+ KLL+ + L ++ Sbjct: 220 VRIIRVVRFAAKLGFE-IEPATRAPIIRMADLLANVPASRLFDEMIKLLQTGHSLASLEE 278 Query: 225 MYNGGIFKEIF 235 + G+ + +F Sbjct: 279 LRKQGLHRGVF 289 >gi|161367653|ref|NP_285839.2| poly(A) polymerase I [Escherichia coli O157:H7 str. EDL933] Length = 472 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK + +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEXWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 263 >gi|25497051|pir||C85498 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12512861|gb|AAG54447.1|AE005190_9 poly(A) polymerase I [Escherichia coli O157:H7 str. EDL933] Length = 454 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK + +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEXWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|238762459|ref|ZP_04623430.1| Phosphatase [Yersinia kristensenii ATCC 33638] gi|238699444|gb|EEP92190.1| Phosphatase [Yersinia kristensenii ATCC 33638] Length = 412 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL V + D + P++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ +G++ D G DL NR Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGRQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF FAH G ++ L+AS+ L L+ ER Sbjct: 120 VLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVAPETQSLMASMAKSGELSALTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E K L+ ++P + + G +F +++ + Sbjct: 177 VWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERL 213 >gi|217972060|ref|YP_002356811.1| poly(A) polymerase [Shewanella baltica OS223] gi|217497195|gb|ACK45388.1| poly(A) polymerase [Shewanella baltica OS223] Length = 513 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 20/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F R Sbjct: 79 NALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRV----V 134 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ T R S +GR + + D+ RRDFT Sbjct: 135 GRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRDFT 194 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GG+ DL+ T++ IGD R ED +R+LR RF N+ Sbjct: 195 VNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKL---NM 251 Query: 183 DSDGLVASI--KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + + A+ + LK + + R++ E+ KL A L M +F +F V Sbjct: 252 GIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQV 309 >gi|152999732|ref|YP_001365413.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS185] gi|166233877|sp|A6WKL1|CCA_SHEB8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|151364350|gb|ABS07350.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS185] Length = 416 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 18/215 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHPKN-----QQEYA 59 Query: 90 DITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R L G + D LRRD TINA+ D++G + D G+ D+ R Sbjct: 60 LARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGIEDINAR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA +ED LR+LR RF A + ++ L+ I A L L++ER Sbjct: 120 LLRHVSDA---FVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELNALTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGG----IFKEIF 235 +W E++K L +P ++ G +F EIF Sbjct: 177 VWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIF 211 >gi|323142936|ref|ZP_08077646.1| putative polynucleotide adenylyltransferase [Succinatimonas hippei YIT 12066] gi|322417289|gb|EFY07913.1| putative polynucleotide adenylyltransferase [Succinatimonas hippei YIT 12066] Length = 423 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 29/208 (13%) Query: 46 QDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-------- 97 +D DI+T P++V R+F +R + + ++ ++ ++TT RS Sbjct: 8 KDFDISTNATPEQVHRLFRNSRI----IGRRFKIVHVVFGQEIIEVTTFRSAVNGNLGRN 63 Query: 98 --------LITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 LI D Y K + + D+ RRDFTINA+Y D +ID+ GGL DL N Sbjct: 64 QIQNDDGMLIRDNSYGKTL-----EEDATRRDFTINAIYYDISNFTLIDFHGGLYDLNNG 118 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI-LSSERIWS 207 I IGD H R ED +R++R RF A G K S IK L + +S+ R++ Sbjct: 119 IIDIIGDPHTRYQEDPVRMIRAVRFSAKLGFK--ISKRTADPIKTHSALLLNVSNARMFD 176 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E+NKL + L + + + G+F +F Sbjct: 177 EVNKLFLTGHGLQSFHKLRDFGLFNLLF 204 >gi|254524051|ref|ZP_05136106.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14] gi|219721642|gb|EED40167.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14] Length = 461 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 16/193 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N +D D+AT P++V ++F R + ++ ++ + Sbjct: 60 LVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRL----IGRRFRLAHVVFGREIIE 115 Query: 91 ITTLRS---DLITDGRYAKVVFTRD-----WKADSLRRDFTINALY-ADQQGKVIDYVGG 141 + T R+ D D + RD + D++RRDFT NALY A + V DY GG Sbjct: 116 VATFRANSDDGSGDREMENGMLVRDNVYGSIEDDAVRRDFTCNALYYAIEDFSVRDYTGG 175 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 D++ R +K IGD R ED +R+LR R A G + +G A I G L Sbjct: 176 FEDVQARLMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQI--EEGTAAPIPHLAGLLNEA 233 Query: 201 SSERIWSEINKLL 213 + R++ E+ KL Sbjct: 234 APARLFEEVLKLF 246 >gi|152999383|ref|YP_001365064.1| poly(A) polymerase [Shewanella baltica OS185] gi|304411109|ref|ZP_07392725.1| poly(A) polymerase [Shewanella baltica OS183] gi|307301768|ref|ZP_07581526.1| poly(A) polymerase [Shewanella baltica BA175] gi|151364001|gb|ABS07001.1| poly(A) polymerase [Shewanella baltica OS185] gi|304350644|gb|EFM15046.1| poly(A) polymerase [Shewanella baltica OS183] gi|306913806|gb|EFN44227.1| poly(A) polymerase [Shewanella baltica BA175] Length = 513 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 20/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F R Sbjct: 79 NALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRV----V 134 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ T R S +GR + + D+ RRDFT Sbjct: 135 GRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRDFT 194 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GG+ DL+ T++ IGD R ED +R+LR RF N+ Sbjct: 195 VNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKL---NM 251 Query: 183 DSDGLVASI--KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + + A+ + LK + + R++ E+ KL A L M +F +F V Sbjct: 252 GIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQV 309 >gi|86148287|ref|ZP_01066582.1| polyA polymerase [Vibrio sp. MED222] gi|85833912|gb|EAQ52075.1| polyA polymerase [Vibrio sp. MED222] Length = 451 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 28/244 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LN + +VGG VRD L+ +D DIAT P+++ +F R Sbjct: 37 NALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFRNCRL----I 92 Query: 74 SISYGTIKIICRKKYFDITTLRSD----------------LITDGRYAKVVFTRDWKADS 117 + I+ + ++ T R L+ D Y V D+ Sbjct: 93 GRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSEEGMLLRDNVYGNV------DEDA 146 Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF A Sbjct: 147 ERRDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRFAAK 206 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +I+ D + LK + + R++ E KLL++ + L M +F+++F Sbjct: 207 L-DFDIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFP 265 Query: 237 DVQE 240 V E Sbjct: 266 SVAE 269 >gi|253689485|ref|YP_003018675.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756063|gb|ACT14139.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 482 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 17/236 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R + Sbjct: 59 NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRF 118 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-VFTRD-----WKADSLRRDF 122 ++ I++ + + D + + + A+ + RD + D+ RRDF Sbjct: 119 RLAHIMFGPEVIEVATFRGHHDQHQEQQETKNSSQQAQSGMLLRDNIFGSVEEDAQRRDF 178 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 +IN+LY AD V DY GGLNDLR I+ IGD R ED +R+LR RF A Sbjct: 179 SINSLYYSIAD--FSVRDYTGGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAAKLN- 235 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + + L + + R++ E KLL++ + + +F+ +F Sbjct: 236 MTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGHGYPTYKMLCEYQLFQPLF 291 >gi|203454630|ref|YP_002224946.1| gp28 [Mycobacterium phage Myrna] gi|197311678|gb|ACH62036.1| gp28 [Mycobacterium phage Myrna] Length = 397 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 11/202 (5%) Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 + + K +VGG+VRD L+ + +D D T LP + I V +GTI Sbjct: 15 RADRKLFLVGGSVRDLLLAKTPKDFDFTTDALPKEIQGILRDWADAVWDVGARFGTIAAQ 74 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY--ADQQG------KV 135 +ITT+R D GR +VVFT D D +RRDFTINA+ D +G V Sbjct: 75 KDGFEIEITTMRHD--GPGRKPEVVFTDDIIEDLVRRDFTINAMAMQVDAEGLHQGVSDV 132 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G DL +K + ED LR++R RF A K D++ L + + ++ Sbjct: 133 IDPFNGRTDLFLDLLKTPAEPWKTFTEDPLRMMRAARFAAQLDFKVGDTESL-SILSNRE 191 Query: 196 GLKILSSERIWSEINKLLEAKN 217 +K +S+ERI +E++K++ A++ Sbjct: 192 LIKSVSAERIAAELDKIVAAQH 213 >gi|15828457|ref|NP_302720.1| hypothetical protein ML2697 [Mycobacterium leprae TN] gi|221230934|ref|YP_002504350.1| pcnA [Mycobacterium leprae Br4923] gi|13093887|emb|CAC32229.1| pcnA [Mycobacterium leprae] gi|219934041|emb|CAR72797.1| pcnA [Mycobacterium leprae Br4923] Length = 486 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 7/219 (3%) Query: 31 IVGGAVRDSLMN-LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ L D+D AT P++V +I + + T I +GTI + Sbjct: 43 LVGGSVRDALLGRLDSPDLDFATDAGPEQVQQIMRRWADNLWETGIEFGTIGVGKGDYRL 102 Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD----QQGKVIDYVGGLND 144 +ITT R+D R +V F+ D +RRDFT+NA+ G+ D +GGL Sbjct: 103 EITTFRADRYDQVSRNPEVRFSDRLDDDLVRRDFTVNAMAVRIASYGPGEFFDPLGGLAA 162 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 LR R ++ +D LR+LR RF + G + A + L +S+ER Sbjct: 163 LRVRVLETPAAPSVSFGDDPLRMLRAARFVSQLG-FTVAPQVHAAIEEMASQLARISAER 221 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + +E++KLL +P I + G+ + + ++ ++ + Sbjct: 222 VSTELDKLLLGNDPAAGIDLLVQTGMGEVVLPEIGDMRM 260 >gi|255021401|ref|ZP_05293449.1| Poly(A) polymerase [Acidithiobacillus caldus ATCC 51756] gi|254969264|gb|EET26778.1| Poly(A) polymerase [Acidithiobacillus caldus ATCC 51756] Length = 499 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 17/254 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------ 66 S + +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F + Sbjct: 54 SGALQVLNTLHQAGHQAYLVGGSVRDLLLGREPKDYDVATDARPEQVRKLFRRNARLIGR 113 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 R+ ++ +++ + + S+ GR + D+ RRDFT NA Sbjct: 114 RFILVHVQFGPEIVEVATFRGQGESAEETSERSASGRILADNVYGSLEEDAGRRDFTANA 173 Query: 127 LY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 LY AD+ ++D+ GL DL+ ++ IGD R ED +R+LR RF A G + +D Sbjct: 174 LYYNIADR--SILDFADGLTDLQAGRLRMIGDPEQRYREDPVRMLRAVRFAAKLGFQ-MD 230 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + A + L + S R++ E KL + ++ + G+F +F L Sbjct: 231 AAVEAAIAPCRDLLLEVPSARLFEETIKLFLTGHAQSSFDLLRRTGLFAALF-----PQL 285 Query: 244 DQLSQVIEAEQVFE 257 D++ +AE E Sbjct: 286 DRVLDAADAESARE 299 >gi|255324026|ref|ZP_05365151.1| tRNA adenylyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298883|gb|EET78175.1| tRNA adenylyltransferase [Corynebacterium tuberculostearicum SK141] Length = 478 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 10/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+ V I + V T I +GT+ + + + Sbjct: 42 LVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIDFGTVSAAYKGQQIE 101 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 ITT RSD DG R +VV+ + D +RRDF NA L AD K D + GL+D Sbjct: 102 ITTFRSDSY-DGQSRNPEVVYGDTLEGDLVRRDFKANAMAIELLADASFKFHDPLHGLHD 160 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSE 203 + +R + +D LR+LR RF + E + +D +V +++ G ++ ++ E Sbjct: 161 IADRVLDTPDKPEISFHDDPLRMLRAARFASQL-EFRV-ADRVVEAMRDMAGEIQRITVE 218 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 R+ E++KL+ P + I + + GI IF ++ + + Sbjct: 219 RVQVELDKLICGTAPWDGIDLLVSTGIADYIFPEIPALRM 258 >gi|238793671|ref|ZP_04637294.1| Phosphatase [Yersinia intermedia ATCC 29909] gi|238727086|gb|EEQ18617.1| Phosphatase [Yersinia intermedia ATCC 29909] Length = 412 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL V + D + P++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPVTEQDWVVVGCTPEQLLTQGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ G++ID G DL NR Sbjct: 60 LARTERKSGAGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSADGELIDPYHGQQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF FAH G ++ L+A++ L L+ ER Sbjct: 120 VLRHVSDA---FGEDPLRVLRVARFAARFAHLGFSIATETQSLMAAMAQSGELSALTPER 176 Query: 205 IWSEINKLLEAKNP 218 +W E K L+ ++P Sbjct: 177 VWKETEKALKTQSP 190 >gi|240080315|ref|ZP_04724858.1| PcnB [Neisseria gonorrhoeae FA19] gi|240123108|ref|ZP_04736064.1| PcnB [Neisseria gonorrhoeae PID332] gi|240127811|ref|ZP_04740472.1| PcnB [Neisseria gonorrhoeae SK-93-1035] gi|268596463|ref|ZP_06130630.1| poly(A) polymerase [Neisseria gonorrhoeae FA19] gi|268681735|ref|ZP_06148597.1| poly(A) polymerase [Neisseria gonorrhoeae PID332] gi|268686207|ref|ZP_06153069.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035] gi|268550251|gb|EEZ45270.1| poly(A) polymerase [Neisseria gonorrhoeae FA19] gi|268622019|gb|EEZ54419.1| poly(A) polymerase [Neisseria gonorrhoeae PID332] gi|268626491|gb|EEZ58891.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035] Length = 452 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IG+A R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|219684016|ref|YP_002470399.1| tRNA adenylyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|219621666|gb|ACL29823.1| tRNA adenylyltransferase [Bifidobacterium animalis subsp. lactis AD011] Length = 472 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 124/255 (48%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ D+D + P++ ++R F + + +GT+ + R+ Sbjct: 24 ALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFWDM--GRKFGTLGAMRRR 81 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYV 139 ++TT RSD+ D R +V + + D RRDFT+NA+ + +D Sbjct: 82 PDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVNAMALTVPDLEFVDPF 141 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG NDL R ++ D + +D LR++R RF A G +I+ + A + ++I Sbjct: 142 GGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIEPETAEAITRMTDRIEI 200 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P I + + G+ + ++ + L ++ + + VF+ Sbjct: 201 VSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRL-EIDEHHRHKDVFDHT 259 Query: 260 IDSLLRFIVLISWQD 274 + + R + L + D Sbjct: 260 MIVVDRAVALETGPD 274 >gi|311740246|ref|ZP_07714077.1| tRNA adenylyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304629|gb|EFQ80701.1| tRNA adenylyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 478 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 10/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+ V I + V T I +GT+ + + + Sbjct: 42 LVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIDFGTVSAAYKGQQIE 101 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 ITT RSD DG R +VV+ + D +RRDF NA L AD K D + GL D Sbjct: 102 ITTFRSDSY-DGQSRNPEVVYGDTLEGDLVRRDFKANAMAIELLADASFKFHDPLHGLQD 160 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSE 203 + +R + +D LR+LR RF + E + +D +V +++ G ++ ++ E Sbjct: 161 IADRVLDTPDKPEISFHDDPLRMLRAARFASQL-EFRV-ADRVVEAMRDMAGEIQRITVE 218 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 R+ E++KL+ P + I + + GI IF ++ + + Sbjct: 219 RVQVELDKLICGTAPWDGIDLLVSTGIADYIFPEIPALRM 258 >gi|183602655|ref|ZP_02964019.1| probable RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|241191621|ref|YP_002969015.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241197026|ref|YP_002970581.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218073|gb|EDT88720.1| probable RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|240250013|gb|ACS46953.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251580|gb|ACS48519.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794613|gb|ADG34148.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 502 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 13/225 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ D+D + P++ ++R F + + +GT+ + R+ Sbjct: 54 ALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFWDM--GRKFGTLGAMRRR 111 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYV 139 ++TT RSD+ D R +V + + D RRDFT+NA+ + +D Sbjct: 112 PDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVNAMALTVPDLEFVDPF 171 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG NDL R ++ D + +D LR++R RF A G +I+ + A + ++I Sbjct: 172 GGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIEPETAEAITRMTDRIEI 230 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +S+ER+ E+ KLL + P I + + G+ + ++ + L+ Sbjct: 231 VSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRLE 275 >gi|312795197|ref|YP_004028119.1| Poly(A) polymerase / tRNA-nucleotidyltransferase [Burkholderia rhizoxinica HKI 454] gi|312166972|emb|CBW73975.1| Poly(A) polymerase (EC 2.7.7.19) / tRNA-nucleotidyltransferase (EC 2.7.7.25) [Burkholderia rhizoxinica HKI 454] Length = 572 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 35/230 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+N++ +D D+AT PD V+++F + R Sbjct: 123 IRVTDTLQQAGFRAFIVGGAVRDLLLNIAPKDFDVATDATPDEVVKLFRRARLIGRRFQI 182 Query: 68 ------------------YKVIPTSISYGTIKIIC-----RKKYFDITTLRSDLITDGRY 104 +P + R+ D T D GR Sbjct: 183 VHVQFGQEIIEVSTFRALMDAVPADVGSADSAPAAPPRKLRRGELDRRTHAVD--ASGRV 240 Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILED 163 + + D+ RRDFT+NA+Y D + V+DY G++D+R R ++ IG+ R ED Sbjct: 241 LRDNVWGEQHEDATRRDFTVNAMYYDPATQTVLDYHRGMDDIRARVLRMIGEPATRFRED 300 Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +R+LR RF A G I+S K + + + R++ E+ KLL Sbjct: 301 PVRMLRVVRFAAKLG-FTIESSTHAPIAKLADLINNVPAARLFDEMLKLL 349 >gi|262374298|ref|ZP_06067574.1| poly(A) polymerase I [Acinetobacter junii SH205] gi|262310856|gb|EEY91944.1| poly(A) polymerase I [Acinetobacter junii SH205] Length = 484 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 13/232 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++++ L K ++ IVGG VRD ++ L+ +D D T P +V +F + Sbjct: 20 ILDVIDSLTKAGYEAYIVGGGVRDMMLGLNPKDFDAVTNATPAQVKEVFGRRCRI---IG 76 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALY- 128 + + ++ ++ T R+ A + RD W + D RRDF+IN LY Sbjct: 77 RRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYY 136 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL- 187 ++ V+D+ ++D++ RT++F+G+ R ED +R+LR RF A + IDS L Sbjct: 137 QPRKAIVLDFCHAVDDIKTRTLRFLGEPAQRFEEDPVRMLRALRFAAKLNFQ-IDSSILD 195 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY-NGGIFKEIFLDV 238 V + + + L+ +S R++ E KL + LN ++ M G++K++F ++ Sbjct: 196 VFNPEMTQLLRDVSPHRLYDESQKLFTMGH-LNRVLPMLIEFGVWKQLFAEI 246 >gi|301170365|emb|CBW29971.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Haemophilus influenzae 10810] Length = 416 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 14/214 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L++L V+D D I P ++ + + K P ++ T +++Y Sbjct: 5 LVGGAVRDQLLDLPVKDRDWIVVGTDPATLLSLGYQQVGKDFPVFLNPKT-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G T + D +RRD TINA+ + G++ID GG DL NR Sbjct: 60 LARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A Y ++ L+A + L+ +++ER Sbjct: 120 ILRHISPA---FSEDPLRVLRVARFTARYHSLGFKIASETLALMAELALSGELQHITAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E K L KNP ++ G +F ++ Sbjct: 177 VWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|283783928|ref|YP_003363793.1| poly(A) polymerase [Citrobacter rodentium ICC168] gi|282947382|emb|CBG86927.1| poly(A) polymerase [Citrobacter rodentium ICC168] Length = 472 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 18/236 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A + Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKL-D 227 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E KLL++ + + +F+ +F Sbjct: 228 MRISPETAEPIPRLATLLNDIPPARLFEESLKLLQSGYGYETYLKLREYSLFQPLF 283 >gi|240013733|ref|ZP_04720646.1| PcnB [Neisseria gonorrhoeae DGI18] gi|240115266|ref|ZP_04729328.1| PcnB [Neisseria gonorrhoeae PID18] gi|240120803|ref|ZP_04733765.1| PcnB [Neisseria gonorrhoeae PID24-1] gi|268600948|ref|ZP_06135115.1| poly(A) polymerase [Neisseria gonorrhoeae PID18] gi|268585079|gb|EEZ49755.1| poly(A) polymerase [Neisseria gonorrhoeae PID18] Length = 452 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IG+A R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|154331972|ref|XP_001561803.1| tRNA nucleotidyltransferase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059123|emb|CAM41598.1| putative tRNA nucleotidyltransferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 518 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 98/233 (42%), Gaps = 29/233 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP----------------------DRVMRIFSKTRY 68 + GG VRD L+ L DIDIA P DR ++ Sbjct: 33 VAGGWVRDMLLGLHSNDIDIAIETHPNAEPVTGEAFAHHVSKYQLFHGDRSHKVSVIRSN 92 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + I T+++ + + LRSD+ TD V D+ RRDFTINAL+ Sbjct: 93 PALSKHIETATLRV--NEIPVEFCALRSDVYTDESRIPQVHPAAPLEDAQRRDFTINALF 150 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + G V DY GL DLR R I+ + +D LR+LR RF G N D L Sbjct: 151 YNLHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFTDDPLRLLRGVRFVGQLGALNFSLDEL 210 Query: 188 VASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + + L +L S ERI E K++ A +P I +++ I + I L Sbjct: 211 ITNCVDDSLLDVLQLKVSRERIGKEFVKMMTAAHPERCIALLHDMHILQHILL 263 >gi|227547075|ref|ZP_03977124.1| possible tRNA adenylyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212492|gb|EEI80381.1| possible tRNA adenylyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 471 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D ++ P++ I + + +GT+ + R+ Sbjct: 24 ALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFWDMGRKFGTLGAMRRRPD 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYV 139 ++TT RSD D R +V + + D RRDFT+NA+ D Q +D Sbjct: 84 GTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLQ--FVDPF 141 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG +DL ++ D +D LR++R RF A G + I D A + + I Sbjct: 142 GGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAPDAAEAITSMRDRIDI 200 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P + + G+ +F ++ + L Q+ + + VFE Sbjct: 201 VSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL-QIDEHHRHKDVFEHT 259 Query: 260 IDSLLRFIVLISWQD 274 + L R I L + D Sbjct: 260 MIVLERAIALETGPD 274 >gi|159899134|ref|YP_001545381.1| polynucleotide adenylyltransferase region [Herpetosiphon aurantiacus ATCC 23779] gi|159892173|gb|ABX05253.1| Polynucleotide adenylyltransferase region [Herpetosiphon aurantiacus ATCC 23779] Length = 404 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 97/386 (25%), Positives = 169/386 (43%), Gaps = 52/386 (13%) Query: 29 SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI----SYGTIKI- 82 +C +VGG VRD L+ V DIDI + D +M ++ V P + +GT + Sbjct: 33 ACYLVGGCVRDWLLERPVGDIDI--VVEGDAIM--LAEIWATVWPDQLHIHPPFGTATLS 88 Query: 83 ------ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL---YADQQG 133 +C D+ + RS+ VV + AD RRDFTIN L A+Q Sbjct: 89 WQDAAGVCS---LDLISARSEYYPQPAALPVVSFANLAADLARRDFTINCLALRLANQPT 145 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI-- 191 +ID G DL+ I+ + D ++D RILR RF A N + + A++ Sbjct: 146 LLIDPQHGYADLQQSLIRVLHD--QSFIDDPTRILRAIRFAARL---NFELEPQTATLLQ 200 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 +A L + R+W+E+ LL + L A+ + G+ ++F SL+Q + Sbjct: 201 QALPWLDQTTPARLWNELGLLLTEPSALAALSLADSWGVLGQLFGSGWSSSLNQ-----Q 255 Query: 252 AEQVFEWKIDSLLR--FIVLISWQDKKSILSMAKKFSLPREIRYFL-----ISFFNCNFN 304 AE V + D L +++L+S + + ++FSL + IR + ++ N Sbjct: 256 AEMVLASQPDQQLAIVWLLLMSQLSPSAAQTQTQRFSLAKPIRLMVEQWPELAALVATLN 315 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + TL+ ++ +L + + L+++ + ++ + + LQ L I Sbjct: 316 RTTLAAGQLDRLLSPFAPLL----LEVWASNQATSI-QRRIKYYLQYLRPIAS------A 364 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQ 390 LTG D+ GI G + +L ++ Sbjct: 365 LTGRDLQAQGIAAGPQYKTLLAEARE 390 >gi|270263017|ref|ZP_06191287.1| poly(A) polymerase [Serratia odorifera 4Rx13] gi|270042705|gb|EFA15799.1| poly(A) polymerase [Serratia odorifera 4Rx13] Length = 492 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 16/239 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R Sbjct: 71 ENALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRLVGRR 130 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + T SD + + + RD + D+ RRDF Sbjct: 131 FRLAHVMFGPEIIEVATFRGHHEQQTPESDKNSSQQAQNGMLLRDNIFGSIEEDAQRRDF 190 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 TIN+LY AD + DYV G+ DL+ I+ IGD R ED +R+LR RF A + Sbjct: 191 TINSLYYGVAD--FTLRDYVDGMRDLQQGVIRLIGDPETRYREDPVRMLRAVRFAAKL-D 247 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I + + L + R++ E KLL+A + + +F+ +F + Sbjct: 248 MSISDETAEPIPRLASLLHEIPPARLFEESLKLLQAGYGYPTYLKLCEYQLFQPLFPQI 306 >gi|120610653|ref|YP_970331.1| poly(A) polymerase [Acidovorax citrulli AAC00-1] gi|120589117|gb|ABM32557.1| poly(A) polymerase [Acidovorax citrulli AAC00-1] Length = 531 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 117/258 (45%), Gaps = 31/258 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D ++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 DRRATEVVRTLQQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAFIIGK 102 Query: 67 RYKVIPTSISYG----TIKIICRKKYFD-----------------ITTLRSDLITDGRYA 105 R++++ G I++ + Y D + ++ + GR Sbjct: 103 RFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAEQVSGNEKTSRAALAGMQHAVDASGRVL 162 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + D+ RRDFTINA+Y D + V+DY G+ D R + I+ IGD R ED Sbjct: 163 RDNVWGPQDEDATRRDFTINAMYYDPATQVVVDYHKGIQDARKKVIRMIGDPATRYREDP 222 Query: 165 LRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +RI+R RF A I+ ++++ L + R++ E+ KLL+ + + I Sbjct: 223 VRIIRAVRFAAKLAGVGFTIEPKTAAPLVESQALLADVPQSRMFDEMLKLLQTGHAIATI 282 Query: 223 VHMYNGGIFKEIF--LDV 238 + G+ I+ LDV Sbjct: 283 EQLRKLGLATGIYPLLDV 300 >gi|320532845|ref|ZP_08033618.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134920|gb|EFW27095.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 171 str. F0337] Length = 495 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 3/203 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + ++ D+D+ T+ P++ +I + ++GTI Sbjct: 52 ALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWDVGRAFGTIGARKGSTIV 111 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT R++ G R +V + D RRDFT+NA+ +++D GGL DL Sbjct: 112 EVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRLPDLELVDPCGGLADLAA 171 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ A +D LRI+R RF A G +++ D + A + L+I+S+ER+ + Sbjct: 172 GVLRTPVSAEQSFDDDPLRIMRAARFAAQLG-FDVEMDVMTAMEEMASRLEIVSAERVRA 230 Query: 208 EINKLLEAKNPLNAIVHMYNGGI 230 E+ +LL + P + + + G+ Sbjct: 231 ELERLLISPWPRRGLELLVHAGV 253 >gi|239998610|ref|ZP_04718534.1| PcnB [Neisseria gonorrhoeae 35/02] gi|240112526|ref|ZP_04727016.1| PcnB [Neisseria gonorrhoeae MS11] gi|240125359|ref|ZP_04738245.1| PcnB [Neisseria gonorrhoeae SK-92-679] gi|254493329|ref|ZP_05106500.1| poly(A) polymerase [Neisseria gonorrhoeae 1291] gi|268594467|ref|ZP_06128634.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02] gi|268598595|ref|ZP_06132762.1| poly(A) polymerase [Neisseria gonorrhoeae MS11] gi|268683962|ref|ZP_06150824.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679] gi|226512369|gb|EEH61714.1| poly(A) polymerase [Neisseria gonorrhoeae 1291] gi|268547856|gb|EEZ43274.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02] gi|268582726|gb|EEZ47402.1| poly(A) polymerase [Neisseria gonorrhoeae MS11] gi|268624246|gb|EEZ56646.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679] gi|317163883|gb|ADV07424.1| hypothetical protein NGTW08_0452 [Neisseria gonorrhoeae TCDC-NG08107] Length = 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IG+A R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|59800858|ref|YP_207570.1| hypothetical protein NGO0415 [Neisseria gonorrhoeae FA 1090] gi|194098159|ref|YP_002001207.1| PcnB [Neisseria gonorrhoeae NCCP11945] gi|240016171|ref|ZP_04722711.1| PcnB [Neisseria gonorrhoeae FA6140] gi|59717753|gb|AAW89158.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Neisseria gonorrhoeae FA 1090] gi|193933449|gb|ACF29273.1| PcnB [Neisseria gonorrhoeae NCCP11945] Length = 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IG+A R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|284034912|ref|YP_003384843.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kribbella flavida DSM 17836] gi|283814205|gb|ADB36044.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kribbella flavida DSM 17836] Length = 475 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 26/264 (9%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK-- 87 +VGG VRD L+ +D+D AT+ PD V R+ + V +GTI CRK Sbjct: 34 ALVGGPVRDILLGRGSKDLDFATSARPDDVQRLLTGWADHVWDIGKDFGTIG--CRKGDW 91 Query: 88 YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA-DQQGKVIDYVGGLNDL 145 +ITT RS+ R +V + +AD RRDF +NA+ + +D GGL D+ Sbjct: 92 VLEITTYRSESYDPTSRKPEVAYGDTLEADLARRDFAMNAMAVLLPSHRFVDPYGGLEDV 151 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 N+ I+ G +D LR++R RF A D + A + + I+S+ER+ Sbjct: 152 ANKAIRTPGSPEDSFSDDPLRMMRAARFAAQLA-FTPDPAVVAAMTAMAERITIVSAERV 210 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQLSQV 249 E+ KL+ A P + + + G+ + DV + SL L Q Sbjct: 211 RDELVKLVCAPYPRIGLDLLVSTGLADHVLPELPALRLELDEHHRHKDVYQHSLTVLDQA 270 Query: 250 IEAEQVFEWKI---DSLLRFIVLI 270 I+ E ++ D ++RF LI Sbjct: 271 IDLEPRLGEEVELPDFVVRFAALI 294 >gi|114048784|ref|YP_739334.1| poly(A) polymerase [Shewanella sp. MR-7] gi|113890226|gb|ABI44277.1| poly(A) polymerase [Shewanella sp. MR-7] Length = 435 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 16/237 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 15 ENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV---- 70 Query: 73 TSISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDF 122 + I+ + ++ T R S +GR + + D+ RRDF Sbjct: 71 VGRRFRLAHIVFGRDVIEVATFRGHHGDSNEKISKANAEGRLLRDNVYGEIDEDAERRDF 130 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NALY D + Y GG++DL+ T++ IGD R ED +R+LR R FA Sbjct: 131 TVNALYYDISDYSIRSYGGGMDDLKAGTLRLIGDPETRYREDPVRMLRAVR-FATKLSMT 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ID + LK + + R++ E+ KL A + M +F +F V Sbjct: 190 IDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFAPLFPQV 246 >gi|221214419|ref|ZP_03587390.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD1] gi|221165676|gb|EED98151.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD1] Length = 512 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R+++ Sbjct: 73 VRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFTRD 112 + I++ + D L+ D + GR + + Sbjct: 133 VHVQFGQELIEVSTFRALVDAPPEAATAEPPRRLKRDELDRRTHAVDASGRVLRDNVWGE 192 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 QHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVV 252 Query: 172 RFFAHYG 178 RF A G Sbjct: 253 RFAAKLG 259 >gi|167837745|ref|ZP_02464628.1| polyA polymerase [Burkholderia thailandensis MSMB43] Length = 517 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 76 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 135 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 136 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 195 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 196 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 255 Query: 171 FRFFAHYG 178 RF A G Sbjct: 256 VRFAAKLG 263 >gi|322690155|ref|YP_004209889.1| RNA nucleotidyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|320461491|dbj|BAJ72111.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 471 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D ++ P++ I + + +GT+ + R+ Sbjct: 24 ALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFWDMGRKFGTLGAMRRRPD 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYV 139 ++TT RSD D R +V + + D RRDFT+NA+ D Q +D Sbjct: 84 GTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLQ--FVDPF 141 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG +DL ++ D +D LR++R RF A G + I D A + + I Sbjct: 142 GGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAPDAAEAITSMRDRIDI 200 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P + + G+ +F ++ + L Q+ + + VFE Sbjct: 201 VSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL-QIDEHHRHKDVFEHT 259 Query: 260 IDSLLRFIVLISWQD 274 + L R I L + D Sbjct: 260 MIVLERAIALETGPD 274 >gi|167580696|ref|ZP_02373570.1| polyA polymerase [Burkholderia thailandensis TXDOH] Length = 514 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 73 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 133 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 192 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 252 Query: 171 FRFFAHYG 178 RF A G Sbjct: 253 VRFAAKLG 260 >gi|161525796|ref|YP_001580808.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616] gi|189349483|ref|YP_001945111.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616] gi|160343225|gb|ABX16311.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616] gi|189333505|dbj|BAG42575.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616] Length = 512 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 73 VRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFTRD 112 + I++ + D L+ D + GR + + Sbjct: 133 VHVQFGQELIEVSTFRALVDAPPEAATAEPPKRLKRDELDRRTHAVDASGRVLRDNVWGE 192 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 QHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVV 252 Query: 172 RFFAHYG 178 RF A G Sbjct: 253 RFAAKLG 259 >gi|317509432|ref|ZP_07967050.1| tRNA adenylyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316252261|gb|EFV11713.1| tRNA adenylyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 487 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 8/219 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P++ ++ ++ I++GT+ + + Sbjct: 51 LVGGSVRDAVLGRLGDDLDFTTDAKPEQTQKLLRGWADELWDVGIAFGTVGAVKDGHKLE 110 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 ITT R+D R V F D + D +RRDF +NA L G+ +D +GGL+D+ Sbjct: 111 ITTYRTDSYDQRSRNPVVAFGTDLRGDLVRRDFRMNAMAVSLTEQGCGEFVDPLGGLDDV 170 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 I +D LR+LR RF A G S +V +++ G ++ +++ER Sbjct: 171 LAGKIDTPDSPEISFGDDPLRMLRAARFAAQLG--FTWSPRVVLAVEKMAGEIQRITAER 228 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 I +E+ KLL ++ + + H+ + G+ + + ++ ++ L Sbjct: 229 IGAELEKLLVGEHAVEGLEHLVDSGLAEYVLPELPQLQL 267 >gi|160874003|ref|YP_001553319.1| poly(A) polymerase [Shewanella baltica OS195] gi|160859525|gb|ABX48059.1| poly(A) polymerase [Shewanella baltica OS195] gi|315266232|gb|ADT93085.1| poly(A) polymerase [Shewanella baltica OS678] Length = 513 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 20/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F R Sbjct: 79 NALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRV----V 134 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ T R S +GR + + D+ RRDFT Sbjct: 135 GRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRDFT 194 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GG+ DL+ T++ IGD R ED +R+LR RF N+ Sbjct: 195 VNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVRFATKL---NM 251 Query: 183 DSDGLVASI--KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + + A+ + LK + + R++ E+ KL A L M +F +F V Sbjct: 252 GIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQV 309 >gi|238750941|ref|ZP_04612438.1| Phosphatase [Yersinia rohdei ATCC 43380] gi|238710855|gb|EEQ03076.1| Phosphatase [Yersinia rohdei ATCC 43380] Length = 412 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL V + D + P++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ +GK+ D G DL NR Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGKLFDPYNGQQDLANR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF FAH G ++ L+A++ L L+ ER Sbjct: 120 VLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVAPETQSLMAAMAESGELSALTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E K L+ +P + + G +F +++ + Sbjct: 177 VWKETEKALKTSSPQIYFQVLRDCGALAVLFPEIERL 213 >gi|237786638|ref|YP_002907343.1| tRNA nucleotidyltransferase [Corynebacterium kroppenstedtii DSM 44385] gi|237759550|gb|ACR18800.1| tRNA nucleotidyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 511 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 10/240 (4%) Query: 13 SDLINILSLLNKG-EDKSC---IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 + L+ +++ L + D C +VGG+VRD+L+ D+D T P + R+ T Sbjct: 45 ASLVPVMTPLAQAFNDDDCDLYLVGGSVRDALLGRLSSDLDFTTNARPHDIHRLLESTCD 104 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINAL 127 V T I YGT+ + ++TT R+D + R +V F D RRDFT+NA+ Sbjct: 105 AVWDTGIDYGTVSGQRSGQDIEVTTFRADTYDGESRNPEVTFGDSLDKDLTRRDFTVNAM 164 Query: 128 YADQQGKVI----DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 + +G D + GL DL + D +D LR+LR RF + G + + Sbjct: 165 AVEVRGDGSQVFHDPLHGLTDLVRGYLDTPDDPAISFHDDPLRMLRACRFVSQLGLR-VA 223 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 A + ++ +++ERI +E++KL+ +P + I M + G+ I ++ + + Sbjct: 224 PRVREAMERMAGDIQRITAERIHAELDKLILGDHPTDGIELMVDTGLADYIIPEIPAMRM 283 >gi|221200986|ref|ZP_03574026.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD2M] gi|221206562|ref|ZP_03579575.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD2] gi|221173871|gb|EEE06305.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD2] gi|221178836|gb|EEE11243.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD2M] Length = 512 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R+++ Sbjct: 73 VRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFTRD 112 + I++ + D L+ D + GR + + Sbjct: 133 VHVQFGQELIEVSTFRALVDAPPEAATAEPPRRLKRDELDRRTHAVDASGRVLRDNVWGE 192 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 QHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVV 252 Query: 172 RFFAHYG 178 RF A G Sbjct: 253 RFAAKLG 259 >gi|53725780|ref|YP_103879.1| polyA polymerase [Burkholderia mallei ATCC 23344] gi|67642145|ref|ZP_00440906.1| polyA polymerase [Burkholderia mallei GB8 horse 4] gi|121598893|ref|YP_991856.1| polyA polymerase [Burkholderia mallei SAVP1] gi|124383907|ref|YP_001027077.1| polyA polymerase [Burkholderia mallei NCTC 10229] gi|126449512|ref|YP_001081728.1| poly(A) polymerase [Burkholderia mallei NCTC 10247] gi|166998831|ref|ZP_02264683.1| poly(A) polymerase [Burkholderia mallei PRL-20] gi|254178813|ref|ZP_04885467.1| poly(A) polymerase [Burkholderia mallei ATCC 10399] gi|254202588|ref|ZP_04908951.1| poly(A) polymerase [Burkholderia mallei FMH] gi|254207926|ref|ZP_04914276.1| poly(A) polymerase [Burkholderia mallei JHU] gi|254355932|ref|ZP_04972210.1| poly(A) polymerase [Burkholderia mallei 2002721280] gi|52429203|gb|AAU49796.1| polyA polymerase [Burkholderia mallei ATCC 23344] gi|121227703|gb|ABM50221.1| polyA polymerase [Burkholderia mallei SAVP1] gi|124291927|gb|ABN01196.1| polyA polymerase [Burkholderia mallei NCTC 10229] gi|126242382|gb|ABO05475.1| poly(A) polymerase [Burkholderia mallei NCTC 10247] gi|147746835|gb|EDK53912.1| poly(A) polymerase [Burkholderia mallei FMH] gi|147751820|gb|EDK58887.1| poly(A) polymerase [Burkholderia mallei JHU] gi|148024907|gb|EDK83085.1| poly(A) polymerase [Burkholderia mallei 2002721280] gi|160694727|gb|EDP84735.1| poly(A) polymerase [Burkholderia mallei ATCC 10399] gi|238523237|gb|EEP86677.1| polyA polymerase [Burkholderia mallei GB8 horse 4] gi|243064916|gb|EES47102.1| poly(A) polymerase [Burkholderia mallei PRL-20] Length = 515 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 74 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 133 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 134 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 193 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 194 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 253 Query: 171 FRFFAHYG 178 RF A G Sbjct: 254 VRFAAKLG 261 >gi|260440917|ref|ZP_05794733.1| PcnB [Neisseria gonorrhoeae DGI2] gi|291044239|ref|ZP_06569948.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae DGI2] gi|291011133|gb|EFE03129.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae DGI2] Length = 477 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IG+A R ED +RILR R G E + ++ +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|53720430|ref|YP_109416.1| putative polynucleotide adenylyltransferase [Burkholderia pseudomallei K96243] gi|76810345|ref|YP_334685.1| polyA polymerase [Burkholderia pseudomallei 1710b] gi|126442154|ref|YP_001060282.1| poly(A) polymerase [Burkholderia pseudomallei 668] gi|126452950|ref|YP_001067541.1| poly(A) polymerase [Burkholderia pseudomallei 1106a] gi|217420727|ref|ZP_03452232.1| poly(A) polymerase [Burkholderia pseudomallei 576] gi|226194299|ref|ZP_03789898.1| poly(A) polymerase [Burkholderia pseudomallei Pakistan 9] gi|237813672|ref|YP_002898123.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia pseudomallei MSHR346] gi|242316927|ref|ZP_04815943.1| poly(A) polymerase [Burkholderia pseudomallei 1106b] gi|254180767|ref|ZP_04887365.1| poly(A) polymerase [Burkholderia pseudomallei 1655] gi|254191602|ref|ZP_04898105.1| poly(A) polymerase [Burkholderia pseudomallei Pasteur 52237] gi|254194852|ref|ZP_04901282.1| poly(A) polymerase [Burkholderia pseudomallei S13] gi|254258221|ref|ZP_04949275.1| poly(A) polymerase [Burkholderia pseudomallei 1710a] gi|254299144|ref|ZP_04966594.1| poly(A) polymerase [Burkholderia pseudomallei 406e] gi|52210844|emb|CAH36831.1| putative polynucleotide adenylyltransferase [Burkholderia pseudomallei K96243] gi|76579798|gb|ABA49273.1| polyA polymerase [Burkholderia pseudomallei 1710b] gi|126221647|gb|ABN85153.1| poly(A) polymerase [Burkholderia pseudomallei 668] gi|126226592|gb|ABN90132.1| poly(A) polymerase [Burkholderia pseudomallei 1106a] gi|157809255|gb|EDO86425.1| poly(A) polymerase [Burkholderia pseudomallei 406e] gi|157939273|gb|EDO94943.1| poly(A) polymerase [Burkholderia pseudomallei Pasteur 52237] gi|169651601|gb|EDS84294.1| poly(A) polymerase [Burkholderia pseudomallei S13] gi|184211306|gb|EDU08349.1| poly(A) polymerase [Burkholderia pseudomallei 1655] gi|217396139|gb|EEC36156.1| poly(A) polymerase [Burkholderia pseudomallei 576] gi|225933764|gb|EEH29752.1| poly(A) polymerase [Burkholderia pseudomallei Pakistan 9] gi|237503094|gb|ACQ95412.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia pseudomallei MSHR346] gi|242140166|gb|EES26568.1| poly(A) polymerase [Burkholderia pseudomallei 1106b] gi|254216910|gb|EET06294.1| poly(A) polymerase [Burkholderia pseudomallei 1710a] Length = 515 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 74 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 133 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 134 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 193 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 194 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 253 Query: 171 FRFFAHYG 178 RF A G Sbjct: 254 VRFAAKLG 261 >gi|114332256|ref|YP_748478.1| poly(A) polymerase [Nitrosomonas eutropha C91] gi|114309270|gb|ABI60513.1| poly(A) polymerase [Nitrosomonas eutropha C91] Length = 462 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 22/225 (9%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 L + + IVGGAVRD L+ L +D DI T P+ V IF +R + + Sbjct: 50 LQQAGYSAYIVGGAVRDLLLGLKPKDYDIVTDATPEEVRAIFRHSRI----IGRRFRLVH 105 Query: 82 IICRKKYFDITTLRS----DLI----------TDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++ + + +++T R DLI GR F + D RRDFTINAL Sbjct: 106 VMSKGETVEVSTFRGKAADDLIQSDKECAYIDATGRLLHDNFFGSQEEDVRRRDFTINAL 165 Query: 128 -YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y ++IDY+ G D+ + + IGD R ED +R+LR R A G + ID D Sbjct: 166 FYNPATEEIIDYLSGFEDVMAKRLNIIGDPEQRYREDPVRMLRAVRLAAKLGIQ-ID-DR 223 Query: 187 LVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A I L + + + R++ E+ KLL + + L A++ + G+ Sbjct: 224 TAAPIGDLAPLLLNVPAARLFDEMLKLLFSGHALTAVIDLRTRGL 268 >gi|23465237|ref|NP_695840.1| RNA nucleotidyltransferase [Bifidobacterium longum NCC2705] gi|46190719|ref|ZP_00206546.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Bifidobacterium longum DJO10A] gi|189440311|ref|YP_001955392.1| tRNA nucleotidyltransferase [Bifidobacterium longum DJO10A] gi|239622867|ref|ZP_04665898.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133644|ref|YP_004000983.1| pcnb [Bifidobacterium longum subsp. longum BBMN68] gi|322692105|ref|YP_004221675.1| RNA nucleotidyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|23325867|gb|AAN24476.1| probable RNA nucleotidyltransferase [Bifidobacterium longum NCC2705] gi|189428746|gb|ACD98894.1| tRNA nucleotidyltransferase [Bifidobacterium longum DJO10A] gi|239514864|gb|EEQ54731.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772903|gb|ADQ02391.1| PcnB [Bifidobacterium longum subsp. longum BBMN68] gi|320456961|dbj|BAJ67583.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp. longum JCM 1217] Length = 471 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D ++ P++ I + + +GT+ + R+ Sbjct: 24 ALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFWDMGRKFGTLGAMRRRPD 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYV 139 ++TT RSD D R +V + + D RRDFT+NA+ D Q +D Sbjct: 84 GTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLQ--FVDPF 141 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG +DL ++ D +D LR++R RF A G + I D A + + I Sbjct: 142 GGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAPDAAEAITSMRDRIDI 200 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P + + G+ +F ++ + L Q+ + + VFE Sbjct: 201 VSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL-QIDEHHRHKDVFEHT 259 Query: 260 IDSLLRFIVLISWQD 274 + L R I L + D Sbjct: 260 MIVLERAIALETGPD 274 >gi|332072349|gb|EGI82832.1| poly A polymerase head domain protein [Streptococcus pneumoniae GA17570] Length = 325 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 153/334 (45%), Gaps = 31/334 (9%) Query: 89 FDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 +++TT R+ D+ D R V F R + D RRDFT+NA D+ G+++D GL DL Sbjct: 9 YEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDLFHGLEDLE 68 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + ++ +G A R ED LRI+R FRF A G ++ + A L+ +S ER + Sbjct: 69 KQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTLTPLLEKISVERTF 127 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IEAEQVFEWKIDSLL 264 E +KLL A + M + +L S D+L+++ +E + FE + Sbjct: 128 VEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLETDFTFESSEQAWA 185 Query: 265 RFIVLISWQDKKSIL-SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 + + ++ +S L S ++++ LI L++ E +L K Sbjct: 186 ALLWALEIENAQSFLKSWKTSRQFAKQVQDLLI----------ILALRENGEL-----SK 230 Query: 324 VMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPLFPLTGDDVVK-YGIP 376 + I L L NL Q LQ +++ IH KK + + GD ++K YG Sbjct: 231 RDCYRFDIDLLLQAENLRQAQGKEVNLQAITEKYQSLTIHDKKEI-QINGDILIKEYGYQ 289 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 PG +G IL + ++ + ++E +H LR+ Sbjct: 290 PGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323 >gi|134280312|ref|ZP_01767023.1| poly(A) polymerase [Burkholderia pseudomallei 305] gi|134248319|gb|EBA48402.1| poly(A) polymerase [Burkholderia pseudomallei 305] Length = 515 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 74 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 133 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 134 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 193 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 194 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 253 Query: 171 FRFFAHYG 178 RF A G Sbjct: 254 VRFAAKLG 261 >gi|229816983|ref|ZP_04447265.1| hypothetical protein BIFANG_02238 [Bifidobacterium angulatum DSM 20098] gi|229785728|gb|EEP21842.1| hypothetical protein BIFANG_02238 [Bifidobacterium angulatum DSM 20098] Length = 478 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 10/253 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D T+ P++ I K R +GT+ + R+ Sbjct: 30 ALVGGPVRDLLLHRRSHDLDFCTSARPEQFEPILRKFGRDGFWDMGRKFGTLGAMRRRAD 89 Query: 88 ----YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141 ++TT R+D D R +V + + D RRDFT+NA+ + + +D GG Sbjct: 90 GTEVQVEVTTYRTDAYNPDSRKPEVAYGDTLEGDLSRRDFTVNAMALRVPELEFVDPFGG 149 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 NDL ++ D +D LR++R RF A G +I+ + A ++I+S Sbjct: 150 ANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FSIEPETAEAMYDMTDRIRIVS 208 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ K L + P I + G+ +F ++ + L Q+ + + VFE + Sbjct: 209 AERVRDELVKTLLSDRPRAGIEALVESGLADIVFPEIPALEL-QIDEHHRHKDVFEHTMI 267 Query: 262 SLLRFIVLISWQD 274 L R + L + D Sbjct: 268 VLDRAVALETDDD 280 >gi|206561603|ref|YP_002232368.1| putative polynucleotide adenylyltransferase [Burkholderia cenocepacia J2315] gi|198037645|emb|CAR53588.1| putative polynucleotide adenylyltransferase [Burkholderia cenocepacia J2315] Length = 516 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 24/189 (12%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R + Sbjct: 71 NAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRF 130 Query: 69 KVIPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFT 110 +++ I++ + D L+ D + GR + Sbjct: 131 QIVHVQFGQELIEVSTFRALVDAPPEAATAEPPKRLKRDELDRRTHAVDASGRVLRDNVW 190 Query: 111 RDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 191 GEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLR 250 Query: 170 FFRFFAHYG 178 RF A G Sbjct: 251 VVRFAAKLG 259 >gi|167740036|ref|ZP_02412810.1| poly(A) polymerase [Burkholderia pseudomallei 14] Length = 470 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 29 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 88 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 89 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 148 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 149 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 208 Query: 171 FRFFAHYG 178 RF A G Sbjct: 209 VRFAAKLG 216 >gi|327482009|gb|AEA85319.1| poly(A) polymerase [Pseudomonas stutzeri DSM 4166] Length = 463 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++++ L + ++ +VGG VRD L+ L+ +D D+AT+ P++V F R VI Sbjct: 43 VSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQVRAEFRNAR--VI--GR 98 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRRD 121 + + + ++ ++ T R++ + GR + + D+ RRD Sbjct: 99 RFKLVHVHFGREIIEVATFRANHPEEDDEDASQLALRNESGRILRDNVYGTLEDDAQRRD 158 Query: 122 FTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 FTINALY D +++D+ G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 159 FTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAA 213 >gi|325140009|gb|EGC62538.1| poly(A) polymerase [Neisseria meningitidis CU385] gi|325200477|gb|ADY95932.1| poly(A) polymerase [Neisseria meningitidis H44/76] Length = 445 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 16/205 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 35 NVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV 94 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + + D++RRDFT NALY D Sbjct: 95 HVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSI------EEDAMRRDFTCNALYYD 148 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 ++ +++D+ G+ D+ + IGDA R ED +RILR R G E + ++ + Sbjct: 149 PEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPI 208 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 209 AESICR--LKHEPVARLFDEIMKLL 231 >gi|251792112|ref|YP_003006832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Aggregatibacter aphrophilus NJ8700] gi|247533499|gb|ACS96745.1| multifunctional CCA protein [Aggregatibacter aphrophilus NJ8700] Length = 423 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 26/250 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL VQD D + P ++ + + K P + + +++Y Sbjct: 10 LVGGAVRDQLLNLPVQDRDWVIVGATPQALLSLGYQQVGKDFPVFLHPQS-----KEEY- 63 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y + F+ D + D +RRD TINA+ D QG + D G +DL Sbjct: 64 --ALARTERKSGQGYTGFICDFSADITLEQDLIRRDLTINAMAQDLQGNLYDPYHGADDL 121 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + R ++ + A +ED LR+LR RF A Y ++ L+ ++ + L+ L+ Sbjct: 122 KQRILRHVSPA---FVEDPLRVLRVARFAARYHHLGFTIEPETLQLMQTLTEQGELQHLT 178 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W+E K L KNP + G +F + LD L V + F +ID Sbjct: 179 AERVWAETEKSLNEKNPEIYFETLRQIGALAVLFPE-----LDALYGVPNPAK-FHPEID 232 Query: 262 SLLRFIVLIS 271 S + ++++ Sbjct: 233 SFVHTMIVLQ 242 >gi|329944766|ref|ZP_08292845.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328529902|gb|EGF56792.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 503 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 9/206 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD+ + ++ D+D+ T+ P++ +++ + +T + V ++GTI Sbjct: 60 ALVGGPVRDAFLGVAPHDLDLTTSARPEQTEEILKAWGETTWDV---GRAFGTIGARKGS 116 Query: 87 KYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLND 144 ++TT R+ D R +V + D RRDFT+NA+ +++D GGL+D Sbjct: 117 TIVEVTTYRTEDYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRLPDLELVDPCGGLSD 176 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + ++ A +D LRI+R RF A G +++ D + A + L+I+S+ER Sbjct: 177 LASGVLRTPVSAEQSFDDDPLRIMRAARFSAQLG-FDVEMDVMAAMEEMAPRLEIVSAER 235 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGI 230 + +E+ +LL + P + + + G+ Sbjct: 236 VRAELERLLIGRWPRRGLELLVHTGV 261 >gi|83719048|ref|YP_441861.1| polyA polymerase [Burkholderia thailandensis E264] gi|257138030|ref|ZP_05586292.1| polyA polymerase [Burkholderia thailandensis E264] gi|83652873|gb|ABC36936.1| polyA polymerase [Burkholderia thailandensis E264] Length = 514 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 73 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 133 VHVQFGQELIEVSTFRALVDTPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 192 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 252 Query: 171 FRFFAHYG 178 RF A G Sbjct: 253 VRFAAKLG 260 >gi|325578734|ref|ZP_08148781.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC 33392] gi|325159558|gb|EGC71690.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC 33392] Length = 430 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 28/240 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------R 67 + I ++ L + ++ IVGG +RD L+ +D D+AT PD++ +F + R Sbjct: 16 NAITVVEKLQRQGYEAYIVGGCLRDLLLGKHPKDFDVATNARPDQIQAVFQRQCRLVGRR 75 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTL----RSD---LITDGRYAKVVFTRDWKADSLR 119 +++ I++ R + D + +SD L+ D Y + + D+ R Sbjct: 76 FRLAHIMFGRDVIEVATFRASHSDARSENQAKQSDEGMLLRDNVYGTI------EQDAER 129 Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-- 176 RDFT+NALY + Q + DY G++DL+N ++ IGD R ED +R+LR RF A Sbjct: 130 RDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSVRFMAKLD 189 Query: 177 -YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + EK S+ + + LK + R++ E KLL++ N + + G+F+++F Sbjct: 190 MFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQSGNGVKTYKLLRQYGLFEQLF 245 >gi|213693333|ref|YP_002323919.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524794|gb|ACJ53541.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459515|dbj|BAJ70136.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 471 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D ++ P++ I + + +GT+ + R+ Sbjct: 24 ALVGGPVRDLLLHRRSHDLDFCSSARPEQFEPILRRWGHDGFWDMGRKFGTLGAMRRRPD 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYV 139 ++TT RSD D R +V + + D RRDFT+NA+ D Q +D Sbjct: 84 GTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLQ--FVDPF 141 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG +DL ++ D +D LR++R RF A G + I D A + + I Sbjct: 142 GGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAPDAAEAITSMRDRIDI 200 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P + + G+ +F ++ + L Q+ + + VFE Sbjct: 201 VSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL-QIDEHHRHKDVFEHT 259 Query: 260 IDSLLRFIVLISWQD 274 + L R I L + D Sbjct: 260 MIVLERAIALETGPD 274 >gi|289177756|gb|ADC85002.1| tRNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis BB-12] Length = 526 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 124/255 (48%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ D+D + P++ ++R F + + +GT+ + R+ Sbjct: 78 ALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFWDM--GRKFGTLGAMRRR 135 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYV 139 ++TT RSD+ D R +V + + D RRDFT+NA+ + +D Sbjct: 136 PDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVNAMALTVPDLEFVDPF 195 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG NDL R ++ D + +D LR++R RF A G +I+ + A + ++I Sbjct: 196 GGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIEPETAEAITRMTDRIEI 254 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P I + + G+ + ++ + L ++ + + VF+ Sbjct: 255 VSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRL-EIDEHHRHKDVFDHT 313 Query: 260 IDSLLRFIVLISWQD 274 + + R + L + D Sbjct: 314 MIVVDRAVALETGPD 328 >gi|167825666|ref|ZP_02457137.1| poly(A) polymerase [Burkholderia pseudomallei 9] Length = 483 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 42 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 101 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 102 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 161 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 162 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 221 Query: 171 FRFFAHYG 178 RF A G Sbjct: 222 VRFAAKLG 229 >gi|167912386|ref|ZP_02499477.1| poly(A) polymerase [Burkholderia pseudomallei 112] Length = 483 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 42 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 101 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 102 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 161 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 162 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 221 Query: 171 FRFFAHYG 178 RF A G Sbjct: 222 VRFAAKLG 229 >gi|167895735|ref|ZP_02483137.1| poly(A) polymerase [Burkholderia pseudomallei 7894] Length = 484 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 43 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 102 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 103 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 162 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 163 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 222 Query: 171 FRFFAHYG 178 RF A G Sbjct: 223 VRFAAKLG 230 >gi|149917655|ref|ZP_01906151.1| poly(A) polymerase [Plesiocystis pacifica SIR-1] gi|149821437|gb|EDM80837.1| poly(A) polymerase [Plesiocystis pacifica SIR-1] Length = 486 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 25/246 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 D D + ++ L ++ +VGG VRD +N +D D+AT+ P+++ R+F +R Sbjct: 37 DKDALKVVRKLLAANHEAYLVGGCVRDLYLNRKPKDFDVATSARPEQIRRVFRNSRIIGR 96 Query: 68 ----------YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W-- 113 K+I TS T + +++ T+ G ++ T D W Sbjct: 97 RFKLAHVFFGSKIIETS----TFRTNPKEEEHAATSEGDAAAEGGGGGDLLITHDNSWGD 152 Query: 114 -KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 K D+ RRDFTIN L+ D ++ ++D+V G+ DL I+ IG+ R ED +R++R Sbjct: 153 IKDDARRRDFTINGLFYDIERRAIVDFVDGVRDLDRGIIRTIGEPEVRFREDPVRMIRAI 212 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 +F A + ++ D A ++ + S R+ E+ KLL + A M +F Sbjct: 213 KFAARL-DFTVEMDSWQALLRCAPDIARCSRARLVEELYKLLRGGSSRRAFELMIQAELF 271 Query: 232 KEIFLD 237 + I+ D Sbjct: 272 QHIWPD 277 >gi|15676739|ref|NP_273884.1| polyA polymerase [Neisseria meningitidis MC58] gi|7226078|gb|AAF41254.1| polyA polymerase [Neisseria meningitidis MC58] Length = 453 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 16/205 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 43 NVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV 102 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + + D++RRDFT NALY D Sbjct: 103 HVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSI------EEDAMRRDFTCNALYYD 156 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 ++ +++D+ G+ D+ + IGDA R ED +RILR R G E + ++ + Sbjct: 157 PEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPI 216 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 217 AESICR--LKHEPVARLFDEIMKLL 239 >gi|167904126|ref|ZP_02491331.1| poly(A) polymerase [Burkholderia pseudomallei NCTC 13177] Length = 482 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 41 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 100 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 101 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 160 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 161 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 220 Query: 171 FRFFAHYG 178 RF A G Sbjct: 221 VRFAAKLG 228 >gi|167817255|ref|ZP_02448935.1| poly(A) polymerase [Burkholderia pseudomallei 91] Length = 485 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 44 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 103 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 104 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 163 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 164 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 223 Query: 171 FRFFAHYG 178 RF A G Sbjct: 224 VRFAAKLG 231 >gi|126175689|ref|YP_001051838.1| poly(A) polymerase [Shewanella baltica OS155] gi|125998894|gb|ABN62969.1| poly(A) polymerase [Shewanella baltica OS155] Length = 450 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 20/244 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F R Sbjct: 16 NALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRV----V 71 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + I+ + ++ T R S +GR + + D+ RRDFT Sbjct: 72 GRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRDFT 131 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + Y GG+ DL+ T++ IGD R ED +R+LR RF N+ Sbjct: 132 VNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKL---NM 188 Query: 183 DSDGLVASI--KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + + A+ + LK + + R++ E+ KL A L M +F +F V Sbjct: 189 GIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQVAA 248 Query: 241 ISLD 244 + D Sbjct: 249 LLKD 252 >gi|221133901|ref|ZP_03560206.1| poly(A) polymerase I [Glaciecola sp. HTCC2999] Length = 443 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 18/235 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LN ++ +VGG VRD L+N +D DIAT P+++ F R Sbjct: 32 NAVKVLRRLNAAGFEAYLVGGCVRDLLLNQHPKDFDIATDATPEQIKAQFKNCRI----I 87 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLRRD 121 + ++ ++ ++ T R I D G+ + + D+ RRD Sbjct: 88 GRRFRLAHVVFGREIIEVATFRGPHIQDKNTSDKSKKDGEGQLVRDNVFGTLEQDAARRD 147 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y + G + D+ GG++ + +TI IGD R ED +R++R RF A + Sbjct: 148 FTINAMYYNVVDGTIRDFAGGIDSIEEKTISLIGDPETRYREDPVRMIRAVRFAAKL-DM 206 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ID A K L+ + R++ E+ KLL + L + G+F ++F Sbjct: 207 TIDEVSDEAIHKFAYLLENIPPARLFEEVLKLLFSGQGLTTYQLLLEYGLFDKLF 261 >gi|54027630|ref|YP_121872.1| putative tRNA nucleotidyltransferase [Nocardia farcinica IFM 10152] gi|54019138|dbj|BAD60508.1| putative tRNA nucleotidyltransferase [Nocardia farcinica IFM 10152] Length = 485 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 17/225 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKKYF 89 +VGG+VRD+++ D+D T P++V+ I V T +++GT+ + Sbjct: 47 LVGGSVRDAVLGRLGTDLDFTTDARPEQVLEIMRGWADHVWDTGGLAFGTVSAAKAGQQL 106 Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL----YADQQGKVIDYVGGLND 144 +ITT RSD R +V F + D +RRDFT+NA+ AD + +D +GG++ Sbjct: 107 EITTFRSDTYDRVSRNPEVTFGDTLEGDLVRRDFTVNAMAVRIAADGSLEFVDPLGGMDA 166 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-----LKI 199 L + +D LR+LR RF + G + L ++A G + Sbjct: 167 LLAGVLDTPASPEDSFDDDPLRMLRAARFVSQLGFE------LAPRVRAAIGRMAEQIDR 220 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +++ER+ E++KL+ +P++ I M G+ + + +V + L+ Sbjct: 221 ITAERVRVELDKLIAGDHPIDGIDIMCETGLAQRVLPEVPAMKLE 265 >gi|145630989|ref|ZP_01786765.1| tRNA nucleotidyltransferase [Haemophilus influenzae R3021] gi|144983456|gb|EDJ90932.1| tRNA nucleotidyltransferase [Haemophilus influenzae R3021] Length = 261 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R + G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKAGAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E K L KNP ++ G +F ++ Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFPEI 210 >gi|71064695|ref|YP_263422.1| hypothetical protein Psyc_0114 [Psychrobacter arcticus 273-4] gi|71037680|gb|AAZ17988.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 745 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +++ L + + IVGG VRD+L+ L +D D T P + +F K R ++I Sbjct: 20 ITEVIATLTRAGFDAYIVGGGVRDTLLGLRPKDFDAVTDAKPHEIKDVFGK-RCRII--G 76 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRD--W---KADSLRRDFTINALY 128 + + ++ ++ T R I D + + RD W K D RRDF+INALY Sbjct: 77 RRFQLAHVYSGRELIEVATFRGPPINDSNTNQDGMILRDNVWGDIKQDFARRDFSINALY 136 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G V D+ G L D+ N+ I+ +G+A RI ED +R+LR RF A G Sbjct: 137 YQPLKGVVHDFCGALEDIDNKIIRLLGNAPIRIEEDPVRLLRALRFKAKLG 187 >gi|329119544|ref|ZP_08248228.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200] gi|327464331|gb|EGF10632.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200] Length = 467 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 14/202 (6%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPT 73 +S L + ++ +VGGAVRD L+ +D D+AT P+ V +F ++ R++++ Sbjct: 60 VSRLQQAGYEAYVVGGAVRDLLIGAQPKDFDVATDATPEEVRALFRRSRIIGRRFRIVHV 119 Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + TI++ R + + ++ D Y + D+ RRDFT NALY D Sbjct: 120 QVGPETIEVTTFRGNGGAVQNEQGRIMKDNTYGTLA------EDAGRRDFTCNALYFDPV 173 Query: 133 GKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + I D+ G+ D+R R I IG+ R ED +RILR R G + A+ Sbjct: 174 KREIHDFHHGVQDVRQRRIVMIGNPAERYQEDPVRILRAIRLAGKLGFTIEERTAAPAAD 233 Query: 192 KAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 234 YAGR-LKEEPPARLFDEITKLL 254 >gi|316984249|gb|EFV63225.1| poly(A) polymerase family protein [Neisseria meningitidis H44/76] Length = 470 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 16/205 (7%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVI 71 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++ R++++ Sbjct: 35 NVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV 94 Query: 72 PTSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 TI++ + + R ++ D Y + + D++RRDFT NALY D Sbjct: 95 HVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSI------EEDAMRRDFTCNALYYD 148 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 ++ +++D+ G+ D+ + IGDA R ED +RILR R G E + ++ + Sbjct: 149 PEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAAPI 208 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI KLL Sbjct: 209 AESICR--LKHEPVARLFDEIMKLL 231 >gi|170725528|ref|YP_001759554.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella woodyi ATCC 51908] gi|226702085|sp|B1KHF1|CCA_SHEWM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|169810875|gb|ACA85459.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella woodyi ATCC 51908] Length = 413 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 38/262 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L ++D D + P+++ + K K P + T +++Y Sbjct: 5 LVGGAVRDNLLKLPIKDRDYMVVGAAPEQMFELGYKQVGKDFPVFLHPKT-----QQEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADS------LRRDFTINALYADQQGKVIDYVGGLN 143 R++ T Y F+ D D LRRD TINA+ D +G++ D GG+ Sbjct: 59 --ALARTERKTGSGYGG--FSCDASPDVTLEEDLLRRDLTINAIAQDDKGELFDPYGGIK 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKI 199 D+ ++ ++ + DA +ED LR+LR RF F H G D L+ I L+ Sbjct: 115 DIESKMLRHVSDA---FVEDPLRVLRVARFAARFHHLGFTVADETLALMTKISQSGELEA 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQVIEAEQVFE 257 L+SER++ E++K L +NP IF E+ Q EI ++ + Q + Sbjct: 172 LTSERVFLELDKALSTQNP----------QIFIEVLNQCQALEILFPEIHALFGVPQPEK 221 Query: 258 W--KIDSLLRFIVLISWQDKKS 277 W +ID+ + +++++ K S Sbjct: 222 WHPEIDTGIHTLMVLAQAAKLS 243 >gi|167618800|ref|ZP_02387431.1| polyA polymerase [Burkholderia thailandensis Bt4] Length = 488 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 47 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 106 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 107 VHVQFGQELIEVSTFRALVDTPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 166 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 167 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 226 Query: 171 FRFFAHYG 178 RF A G Sbjct: 227 VRFAAKLG 234 >gi|82702011|ref|YP_411577.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196] gi|82410076|gb|ABB74185.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196] Length = 471 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 11/228 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 S + + S L + + IVGGA RD ++ L +D D+AT P+ V +F ++ R Sbjct: 45 SGALKVTSGLQEAGYSAFIVGGAARDLVLGLEPKDFDVATNATPEEVRAVFRRSRIIGRR 104 Query: 68 YKVIPTSISYGTIKIICRK--KYFDITTLRSDLITD--GRYAKVVFTRDWKADSLRRDFT 123 ++++ T+++ + + L +D D GR + + D+ RRDFT Sbjct: 105 FRLVHVMWGAETVEVSTFRGGPSGETGGLGADEHADEHGRLLRDNVFGSQEEDARRRDFT 164 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NAL+ D ++ DY+ G DL+ R ++ IGD R ED +R+LR R A G I Sbjct: 165 VNALFFDPVHEEIWDYLNGYEDLKARRLRIIGDPVRRYREDPVRMLRVVRLGAKLG-MEI 223 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 D D + L + R++ E+ KLL + + L + + G+ Sbjct: 224 DPDTAAPISELAPLLLHVPPSRLFDEMLKLLLSGHALACVTDLQKRGL 271 >gi|304409317|ref|ZP_07390937.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS183] gi|307303675|ref|ZP_07583428.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica BA175] gi|304351835|gb|EFM16233.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS183] gi|306912573|gb|EFN42996.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica BA175] Length = 416 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHPKN-----QQEYA 59 Query: 90 DITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R L G + D LRRD TINA+ D++G + D G+ D+ R Sbjct: 60 LARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGIEDINAR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA +ED LR+LR RF A + ++ L+ I A L L++ER Sbjct: 120 LLRHVSDA---FVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELNALTAER 176 Query: 205 IWSEINKLLEAKNP 218 +W E++K L +P Sbjct: 177 VWQEVDKSLGGPHP 190 >gi|237729447|ref|ZP_04559928.1| poly(A) polymerase I [Citrobacter sp. 30_2] gi|226909176|gb|EEH95094.1| poly(A) polymerase I [Citrobacter sp. 30_2] Length = 472 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 18/236 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL I+ IG+ R ED +R+LR RF A + Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRMLRAVRFAAKL-D 227 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E KLL+A + +F+ +F Sbjct: 228 MRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREYSLFQPLF 283 >gi|326317987|ref|YP_004235659.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374823|gb|ADX47092.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 530 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 117/258 (45%), Gaps = 31/258 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D ++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 DRRATEVVRTLQQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAFIIGK 102 Query: 67 RYKVIPTSISYG----TIKIICRKKYFD-----------------ITTLRSDLITDGRYA 105 R++++ G I++ + Y D + ++ + GR Sbjct: 103 RFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAEQVSGNEKTSKAALAGMQHAVDASGRVL 162 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + D+ RRDFTINA+Y D + V+DY G+ D R + I+ IGD R ED Sbjct: 163 RDNVWGPQDEDATRRDFTINAMYYDPATQVVVDYHKGIQDARKKVIRMIGDPATRYREDP 222 Query: 165 LRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +RI+R RF A I+ ++++ L + R++ E+ KLL+ + + I Sbjct: 223 VRIIRAVRFAAKLAGVGFTIEPKTAAPLVQSQTLLADVPQSRMFDEMLKLLQTGHAIATI 282 Query: 223 VHMYNGGIFKEIF--LDV 238 + G+ I+ LDV Sbjct: 283 EQLKKLGLSTGIYPLLDV 300 >gi|260771906|ref|ZP_05880824.1| tRNA nucleotidyltransferase [Vibrio metschnikovii CIP 69.14] gi|260613198|gb|EEX38399.1| tRNA nucleotidyltransferase [Vibrio metschnikovii CIP 69.14] Length = 404 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 27/265 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L++L V D D + P+++ + + K P + T +++Y Sbjct: 5 LVGGAVRDQLLSLPVHDQDWVVVGSSPEQMRQAGYQAVGKDFPVFLHPET-----KQEY- 58 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T Y + D + D RRD TINA+ D GK+ID GG DL Sbjct: 59 --ALARTERKTGSGYTGFACYYAPDVSLEEDLARRDLTINAIAQDNTGKLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA +ED LR+LR RF A ++ L+ I L L+ Sbjct: 117 HNRLLRHVSDA---FIEDPLRVLRVARFAAKLAHLGFVIANETMQLMTQIAQSGELHHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ERIW E +K L NP + + G I ++ D+L V + +Q + +ID Sbjct: 174 AERIWQEWHKSLSTANPEVFLSTLRECGALAIILPEI-----DRLFGVPQPKQ-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFS 286 + + ++++ Q K S+A +F+ Sbjct: 228 TGV-HTLMVAAQAAKLSPSIAVRFA 251 >gi|300718448|ref|YP_003743251.1| multifunctional tRNA nucleotidyl transferase/2\'3\'-cyclic phosphodiesterase/2\'nucleotidase/phosphatase [Erwinia billingiae Eb661] gi|299064284|emb|CAX61404.1| multifunctional tRNA nucleotidyl transferase/2\'3\'-cyclic phosphodiesterase/2\'nucleotidase/phosphatase [Erwinia billingiae Eb661] Length = 408 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 18/199 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+NL V+D D + P+ ++ + + P + T + Sbjct: 2 KTYLVGGAVRDALLNLPVKDKDWVVVGASPEEMLSQGYEQVGRDFPVFLHPET-----HQ 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R G V ++ + D RRD TINA+ D+QG++ D GG Sbjct: 57 EYALARTERKS--GSGYTGFVCYSAPDVTLEQDLQRRDLTINAIAQDEQGRLYDPYGGKA 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL R ++ + A + ED LR+LR RF A + N ++ L+ + L Sbjct: 115 DLDQRLLRHVSAAFN---EDPLRVLRVARFAARFAHLNFVVAEETQALMRWMAESGELNT 171 Query: 200 LSSERIWSEINKLLEAKNP 218 L+ ER+W E K LE +NP Sbjct: 172 LTPERVWKETEKALETRNP 190 >gi|167847153|ref|ZP_02472661.1| poly(A) polymerase [Burkholderia pseudomallei B7210] Length = 488 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 47 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 106 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 107 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 166 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 167 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 226 Query: 171 FRFFAHYG 178 RF A G Sbjct: 227 VRFAAKLG 234 >gi|167721064|ref|ZP_02404300.1| poly(A) polymerase [Burkholderia pseudomallei DM98] Length = 456 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 40 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 99 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 100 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 159 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 160 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 219 Query: 171 FRFFAHYG 178 RF A G Sbjct: 220 VRFAAKLG 227 >gi|78065319|ref|YP_368088.1| Poly(A) polymerase, PcnB [Burkholderia sp. 383] gi|77966064|gb|ABB07444.1| Poly(A) polymerase, PcnB [Burkholderia sp. 383] Length = 512 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 24/189 (12%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R + Sbjct: 71 NAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRF 130 Query: 69 KVIPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFT 110 +++ I++ + D L+ D + GR + Sbjct: 131 QIVHVQFGQELIEVSTFRALVDAPPEAAAAEPPKRLKRDELDRRTHAVDASGRVLRDNVW 190 Query: 111 RDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 191 GEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLR 250 Query: 170 FFRFFAHYG 178 RF A G Sbjct: 251 VVRFAAKLG 259 >gi|322812373|pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) gi|322812374|pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii) gi|322812377|pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii) gi|322812378|pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii) Length = 415 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 17/179 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 19 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 74 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 75 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 134 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 135 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 193 >gi|310288293|ref|YP_003939552.1| tRNA nucleotidyltransferase [Bifidobacterium bifidum S17] gi|311065154|ref|YP_003971880.1| RNA nucleotidyltransferase [Bifidobacterium bifidum PRL2010] gi|309252230|gb|ADO53978.1| tRNA nucleotidyltransferase [Bifidobacterium bifidum S17] gi|310867474|gb|ADP36843.1| RNA nucleotidyltransferase [Bifidobacterium bifidum PRL2010] Length = 475 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 10/248 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D T+ PD I R +GT+ + R++ Sbjct: 29 ALVGGPVRDLLLHRRSHDLDFCTSAHPDEFESILRHWGRDGFWDMGRKFGTLGAMRRRED 88 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141 +ITT RSD + R +V + + D RRDFT+NA+ Q + +D GG Sbjct: 89 GTEVKVEITTYRSDTYDPESRKPEVSYGDSLEGDLSRRDFTVNAMALRVPQLEFVDPFGG 148 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 +DL ++ D + +D LR++R RF A G +I D A + I+S Sbjct: 149 ASDLAKGVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIAPDTAAAISDMTDRIDIVS 207 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ KLL + P + + G+ +F ++ + L ++ + + VFE + Sbjct: 208 AERVRDELTKLLLSDRPRAGVEALVESGLADIVFPEIPALQL-EIDEHHRHKDVFEHTMI 266 Query: 262 SLLRFIVL 269 L R I L Sbjct: 267 VLDRAIAL 274 >gi|317049596|ref|YP_004117244.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pantoea sp. At-9b] gi|316951213|gb|ADU70688.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pantoea sp. At-9b] Length = 410 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 96/200 (48%), Gaps = 20/200 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+ L V+D D + PD ++ + + P + + R+ Sbjct: 2 KTFLVGGAVRDALLRLPVKDKDWVVVGTTPDAMLAQGFQQVGRDFPVFLHPQS-----RE 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 +Y R++ T Y V F D + D RRD TINA+ G +ID GG Sbjct: 57 EY---ALARTERKTGNGYTGFVTWFAPDVTLEQDLQRRDLTINAIAQADNGALIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NRT++ + A + ED LR+LR RF A + N ++ L+ + A L Sbjct: 114 RDLANRTLRHVSSAFN---EDPLRVLRVARFAARFAHLNFRIAEETQALMRDMTASGELA 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L+ ER+W E K L NP Sbjct: 171 HLTPERVWKETEKALLTHNP 190 >gi|227494171|ref|ZP_03924487.1| tRNA nucleotidyltransferase [Actinomyces coleocanis DSM 15436] gi|226831905|gb|EEH64288.1| tRNA nucleotidyltransferase [Actinomyces coleocanis DSM 15436] Length = 489 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 18/254 (7%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ ++L+ D D+ T PD + K ++GTI + Sbjct: 48 ALVGGPVRDAFLSLTPHDFDLTTNARPDTTEGLLEKWGAATWAVGKAFGTIGGRKNQLTV 107 Query: 90 DITTLRSDLITDGRYAKVVFTRD-WKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 +ITT R++ G VV D + D RRDFT+NA K++D GL DL N Sbjct: 108 EITTYRTEAYEVGSRKPVVEYGDTLEGDLTRRDFTVNACAITLPDLKLVDPHNGLQDLAN 167 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ A +D LRI+R RF A G ++ D + A + L+I+S+ERI + Sbjct: 168 GVLRTPVSATQSFDDDPLRIMRAARFAAQLG-IDVSEDVIAAMEEQAHRLEIVSAERIRA 226 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-------EQVFEWKI 260 E+ +L+ + P + M ++ V +I L + S + E + V+E + Sbjct: 227 ELERLIISPYPRRGLELM--------VYTGVCDIVLPEFSALRETVDEHNRHKDVYEHTL 278 Query: 261 DSLLRFIVLISWQD 274 L R I L + D Sbjct: 279 TVLDRAIALETDAD 292 >gi|84394000|ref|ZP_00992739.1| polyA polymerase [Vibrio splendidus 12B01] gi|84375394|gb|EAP92302.1| polyA polymerase [Vibrio splendidus 12B01] Length = 451 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 20/240 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LN + +VGG VRD L+ +D DIAT P+++ +F R + Sbjct: 37 NALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFRNCRLIGRRF 96 Query: 69 KVIPTSISYGTIKIICRKKYFDITT----LRSD---LITDGRYAKVVFTRDWKADSLRRD 121 ++ I++ + + + +SD L+ D Y V D+ RRD Sbjct: 97 RLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSDEGMLLRDNVYGNV------DEDAERRD 150 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF A + Sbjct: 151 FTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRFAAKL-DF 209 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +I+ D + LK + + R++ E KLL++ + L M +F+++F + E Sbjct: 210 DIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQMFPAIAE 269 >gi|226940321|ref|YP_002795395.1| PcnB [Laribacter hongkongensis HLHK9] gi|226715248|gb|ACO74386.1| PcnB [Laribacter hongkongensis HLHK9] Length = 450 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 35/255 (13%) Query: 1 MVSIVQHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 ++ VQH D + + S L + ++ +VGGAVRD L+ +D D+AT P+ Sbjct: 25 VIPFVQHGVRRDQVSPSALKVTSRLQEAGFEAYVVGGAVRDLLIGHEPKDFDVATNATPE 84 Query: 58 RVMRIFSKT-----RYKVIPTSISYGTIKIICRKKYFDITTLRSD-----------LITD 101 V R+F ++ R++++ + +G ++I ++TT R D +I+D Sbjct: 85 EVHRLFRRSRIIGRRFRIV--HVVFGRDEVI------EVTTFRGDGRDLQTTESGRIISD 136 Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRI 160 Y + DS RRDFT NALY + + I DY G+ D+ R + IG R Sbjct: 137 NSYGSMA------DDSRRRDFTANALYYNPADESIHDYHHGVRDVTARRLVMIGQPIERY 190 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED +R+LR R A G +ID L+ ++ R++ E+ K+L + Sbjct: 191 KEDPVRMLRAVRLAAKLG-FSIDESTRKPISHLAPLLRDVAQARLFDEMLKMLHSGASWA 249 Query: 221 AIVHMYNGGIFKEIF 235 + + G+ K IF Sbjct: 250 CLTRLRAEGLHKGIF 264 >gi|145637482|ref|ZP_01793140.1| hypothetical protein CGSHiHH_03937 [Haemophilus influenzae PittHH] gi|145269288|gb|EDK09233.1| hypothetical protein CGSHiHH_03937 [Haemophilus influenzae PittHH] Length = 416 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGTNPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E K L KNP ++ G +F ++ Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|304414040|ref|ZP_07395408.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1] gi|304283254|gb|EFL91650.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1] Length = 471 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG+VRD L+ QD DIAT P++V ++F R Sbjct: 54 NALKVLYRLNKSGYEAYLVGGSVRDLLLGKKPQDFDIATNATPEQVRKLFRNCRL----I 109 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + I+ + ++ T R SD + + RD + D+ Sbjct: 110 GRRFRLAHIMFGRDVIEVATFRGHHEQELSKNSDKNASQQAQSGMLLRDNIFGSIEEDAQ 169 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY V+ DY GGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 170 RRDFTINSLYYGSSDFVLRDYCGGLHDLKQGVIRLIGDPEVRYREDPVRMLRAVRFAAKL 229 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+ + + + +F+ +F Sbjct: 230 -DMTISPETAEPIKRMASLLSDIPPARLFEESLKLLQGGYGYKSYLKLCEYQLFQPLF 286 >gi|261212292|ref|ZP_05926578.1| poly(A) polymerase [Vibrio sp. RC341] gi|260838900|gb|EEX65551.1| poly(A) polymerase [Vibrio sp. RC341] Length = 457 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 18/262 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFTI 124 +++ +++ + + T+ ++ ++ + D+ RRDFTI Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTI 155 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 NA+Y AD + DY GG+ DL +R ++ IGD R ED +R+LR RF + + Sbjct: 156 NAMYYNIADY--SIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 212 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE- 240 I+ D L+ + + R++ E K+L+A + L M +F+++F + E Sbjct: 213 IEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEH 272 Query: 241 ISLDQLSQVIEAEQVFEWKIDS 262 + D SQ EQ+ + +D+ Sbjct: 273 FTADHSSQT---EQMLDLVLDA 291 >gi|167622956|ref|YP_001673250.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella halifaxensis HAW-EB4] gi|167352978|gb|ABZ75591.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella halifaxensis HAW-EB4] Length = 425 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D+D + P +++ + K P + T +++Y Sbjct: 18 LVGGAVRDKLLNLPVKDLDYMVVGATPKQMLALGYNQVGKDFPVFLHPKT-----QQEYA 72 Query: 90 DITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R G ++ + + D +RRD TINA+ D++G + D G+ + R Sbjct: 73 LARTERKTAAGYGGFSVDAAPSVTLEQDLMRRDLTINAIAQDEEGNLYDPYQGIQAIEKR 132 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 +++ + DA +ED LR+LR RF A + ++ L+A I L+ L++ER Sbjct: 133 SLRHVSDA---FVEDPLRVLRVARFAARFHSLGFTVAPETLTLMAEISQSGELQALTAER 189 Query: 205 IWSEINKLLEAKNP 218 ++ E+NK L NP Sbjct: 190 VYIELNKALATDNP 203 >gi|322812372|pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 17/179 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 18 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 133 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 134 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 192 >gi|258623057|ref|ZP_05718070.1| Poly(A) polymerase [Vibrio mimicus VM573] gi|258584670|gb|EEW09406.1| Poly(A) polymerase [Vibrio mimicus VM573] Length = 457 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 18/262 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFTI 124 +++ +++ + + T+ ++ ++ + D+ RRDFTI Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTI 155 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 NA+Y AD + DY GG+ DL +R ++ IGD R ED +R+LR RF + + Sbjct: 156 NAMYYNIADY--SIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 212 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE- 240 I+ D L+ + + R++ E K+L+A + L M +F+++F + E Sbjct: 213 IEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEH 272 Query: 241 ISLDQLSQVIEAEQVFEWKIDS 262 + D SQ EQ+ + +D+ Sbjct: 273 FTADHSSQT---EQMLDLVLDA 291 >gi|167920340|ref|ZP_02507431.1| poly(A) polymerase [Burkholderia pseudomallei BCC215] Length = 488 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 25/188 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 47 IRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 106 Query: 71 IPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVFTR 111 + I++ + D L+ D + GR + Sbjct: 107 VHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVDASGRVLRDNVWG 166 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 167 EQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRV 226 Query: 171 FRFFAHYG 178 RF A G Sbjct: 227 VRFAAKLG 234 >gi|172059737|ref|YP_001807389.1| poly(A) polymerase [Burkholderia ambifaria MC40-6] gi|171992254|gb|ACB63173.1| poly(A) polymerase [Burkholderia ambifaria MC40-6] Length = 512 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 73 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFTRD 112 + I++ + D L+ D + GR + + Sbjct: 133 VHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASGRVLRDNVWGE 192 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 QHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVV 252 Query: 172 RFFAHYG 178 RF A G Sbjct: 253 RFAAKLG 259 >gi|317493723|ref|ZP_07952140.1| poly A polymerase head domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918050|gb|EFV39392.1| poly A polymerase head domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 416 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD +NL V D D + P+ ++ + K P + K + Sbjct: 5 LVGGAVRDKRLNLPVYDRDWVIEGATPEELIAQGFEQVGKDFPV--------FLHPKSHE 56 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y V F D + D LRRD TINA+ G +ID GGL+DL Sbjct: 57 EYALARTERKSGRGYTGFVTYFAPDVTLEQDLLRRDLTINAMAESADGTLIDPYGGLDDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILS 201 N+ ++ + DA H ED LR+LR RF FAH G ++ L+ + L+ L+ Sbjct: 117 NNKVLRHVSDAFH---EDPLRVLRVARFAARFAHLGFHVAAETMALMTQMTTDNELQNLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E K L ++P Sbjct: 174 PERVWRETEKALMTQSP 190 >gi|215484628|ref|YP_002326863.1| poly(A) polymerase family protein [Acinetobacter baumannii AB307-0294] gi|332856904|ref|ZP_08436313.1| putative polynucleotide adenylyltransferase [Acinetobacter baumannii 6013150] gi|332867192|ref|ZP_08437457.1| putative polynucleotide adenylyltransferase [Acinetobacter baumannii 6013113] gi|213986666|gb|ACJ56965.1| poly(A) polymerase family protein [Acinetobacter baumannii AB307-0294] gi|332726958|gb|EGJ58463.1| putative polynucleotide adenylyltransferase [Acinetobacter baumannii 6013150] gi|332734131|gb|EGJ65263.1| putative polynucleotide adenylyltransferase [Acinetobacter baumannii 6013113] Length = 465 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 115/229 (50%), Gaps = 11/229 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L K ++ IVGG VRD ++ L+ +D D T P ++ +F + + Sbjct: 1 MIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRI---IGRRF 57 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--W---KADSLRRDFTINALY-ADQ 131 + ++ ++ T R+ A + RD W + D RRDF+IN LY + Sbjct: 58 ELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPR 117 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VAS 190 +G V+D+ ++D++++T++ +GD R ED +R+LR RF A K ID L + Sbjct: 118 KGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFK-IDPAILDIFD 176 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++ + L+ +S R++ E KL + + + + G++K++F D++ Sbjct: 177 VEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIDFGVWKQLFADIR 225 >gi|258627266|ref|ZP_05722052.1| Poly(A) polymerase [Vibrio mimicus VM603] gi|258580449|gb|EEW05412.1| Poly(A) polymerase [Vibrio mimicus VM603] Length = 457 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 18/262 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFTI 124 +++ +++ + + T+ ++ ++ + D+ RRDFTI Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTI 155 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 NA+Y AD + DY GG+ DL +R ++ IGD R ED +R+LR RF + + Sbjct: 156 NAMYYNIADY--SIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 212 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE- 240 I+ D L+ + + R++ E K+L+A + L M +F+++F + E Sbjct: 213 IEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEH 272 Query: 241 ISLDQLSQVIEAEQVFEWKIDS 262 + D SQ EQ+ + +D+ Sbjct: 273 FTADHSSQT---EQMLDLVLDA 291 >gi|190573757|ref|YP_001971602.1| putative poly(A) polymerase [Stenotrophomonas maltophilia K279a] gi|190011679|emb|CAQ45298.1| putative poly(A) polymerase [Stenotrophomonas maltophilia K279a] Length = 461 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 16/193 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N +D D+AT P++V ++F R + ++ ++ + Sbjct: 60 LVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRL----IGRRFRLAHVVFGREIIE 115 Query: 91 ITTLRS---DLITDGRYAKVVFTRD-----WKADSLRRDFTINALY-ADQQGKVIDYVGG 141 + T R+ D D + RD + D++RRDFT NALY A + V DY GG Sbjct: 116 VATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAVRRDFTCNALYYAIEDFSVRDYTGG 175 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 D++ R +K IGD R ED +R+LR R A G + +G A I G L Sbjct: 176 FEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQI--EEGTAAPIPQLAGLLNEA 233 Query: 201 SSERIWSEINKLL 213 + R++ E+ KL Sbjct: 234 APARLFEEVLKLF 246 >gi|308188139|ref|YP_003932270.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Pantoea vagans C9-1] gi|308058649|gb|ADO10821.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Pantoea vagans C9-1] Length = 421 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 83/365 (22%), Positives = 157/365 (43%), Gaps = 65/365 (17%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+NL V D D + T P+ ++ + + P + + R+ Sbjct: 13 KTFLVGGAVRDALLNLPVTDKDWVVTGSTPEVMLEQGYQQVGRDFPV-----FLHPVSRE 67 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R + G V ++ + D RRD TINA+ D+ G+++D G Sbjct: 68 EYALARTERKN--GKGYTGFVTWSAPDVTLEQDLQRRDLTINAIAQDENGELVDPYNGQR 125 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 D+ R ++ + +A ED LR+LR RF A + N ++ L+ + L Sbjct: 126 DIAQRLLRHVSEA---FSEDPLRVLRVARFAARFAHLNFRIAPETQQLMQQMAESGELSN 182 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L++ER+W E K L ++NP ++ ++ D + QV + Sbjct: 183 LTAERVWKETEKALSSRNP----------QVYFQVLRDCGAL------------QVLFPE 220 Query: 260 IDSLLRFIVLISWQDK-----KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 +D+L I W + +++++A +L EI + F+ K L+ PE+ Sbjct: 221 LDNLFGIPAPIKWHPEIDTGVHTLMTLAMAAALSSEIDMRFATLFHD--VGKALTPPELW 278 Query: 315 KLFYLYG------DKVMIAKLKI--------FLALHYNNLTH----QDTCFILQVLSDII 356 + +G + + +L++ + ++++ H Q ++ + I Sbjct: 279 PSHHGHGLAGVPLVEALCQRLRVPNAIRDLALIVTEFHDIVHTIERQSAASLVALFDRID 338 Query: 357 HWKKP 361 W+KP Sbjct: 339 AWRKP 343 >gi|304396621|ref|ZP_07378502.1| poly(A) polymerase [Pantoea sp. aB] gi|304356130|gb|EFM20496.1| poly(A) polymerase [Pantoea sp. aB] Length = 443 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRLVGRR 77 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + + D + R + RD + D+ RRD Sbjct: 78 FRLAHVMFGPEVIEVATFRGHHQVEEIAEDRNSSQRAQSGMLLRDNIFGSIEDDAQRRDL 137 Query: 123 TINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY V DYVGG++DL I+ IGD R ED +R+LR RF A + Sbjct: 138 TINSLYYSVADFSVRDYVGGISDLEQGIIRLIGDPETRYREDPVRMLRVARFAAKLNMR- 196 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L+ + R++ E KLL+A + + + +F+ +F Sbjct: 197 IAPETAEPIPRLASLLRDIPPARLFEESLKLLQAGYGYSTYLKLCEYQLFQPLF 250 >gi|254498742|ref|ZP_05111458.1| tRNA nucleotidyltransferase [Legionella drancourtii LLAP12] gi|254352070|gb|EET10889.1| tRNA nucleotidyltransferase [Legionella drancourtii LLAP12] Length = 425 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 18/222 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+NL V++ D + P+++++ + + P + T + Sbjct: 17 KVYLVGGAVRDQLLNLPVKERDWVVVGASPEQLLKQKFRQVGRDFPVFLHPQT-----NE 71 Query: 87 KYFDITTLRSDLITDGRYAKVV-FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R G Y F R + D RRD TINA+ D+QG +ID G Sbjct: 72 EYALARTERKS--APGYYGFACDFNRSVTLEEDLARRDLTINAMAMDEQGVLIDPYQGQR 129 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNI--DSDGLVASIKAKKGLKI 199 DL NR ++ I A ED +R+LR RF A HY + ++ L+ S+ + L Sbjct: 130 DLANRVLRHISPA---FAEDPVRVLRLARFAARFHYLGFTVAEETRSLMYSMVTQGELAH 186 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L +ER+W E + LE KNP I+ + + + I ++Q + Sbjct: 187 LVAERVWQEWQRSLEEKNPEQFIITLRSCDALRVILPELQAL 228 >gi|224283939|ref|ZP_03647261.1| metal dependent phosphohydrolase [Bifidobacterium bifidum NCIMB 41171] gi|313141091|ref|ZP_07803284.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bifidobacterium bifidum NCIMB 41171] gi|313133601|gb|EFR51218.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bifidobacterium bifidum NCIMB 41171] Length = 470 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 10/248 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D T+ PD I R +GT+ + R++ Sbjct: 24 ALVGGPVRDLLLHRRSHDLDFCTSAHPDEFEPILRHWGRDGFWDMGRKFGTLGAMRRRED 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141 +ITT RSD + R +V + + D RRDFT+NA+ Q + +D GG Sbjct: 84 GTEVKVEITTYRSDTYDPESRKPEVSYGDSLEGDLSRRDFTVNAMALRVPQLEFVDPFGG 143 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 +DL ++ D + +D LR++R RF A G +I D A + I+S Sbjct: 144 ASDLAKGVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIAPDTAAAISDMTDRIDIVS 202 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ KLL + P + + G+ +F ++ + L ++ + + VFE + Sbjct: 203 AERVRDELTKLLLSDRPRAGVEALVESGLADIVFPEIPALQL-EIDEHHRHKDVFEHTMI 261 Query: 262 SLLRFIVL 269 L R I L Sbjct: 262 VLDRAIAL 269 >gi|225020840|ref|ZP_03710032.1| hypothetical protein CORMATOL_00848 [Corynebacterium matruchotii ATCC 33806] gi|224946322|gb|EEG27531.1| hypothetical protein CORMATOL_00848 [Corynebacterium matruchotii ATCC 33806] Length = 531 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 32/238 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+ ++ I T I YGT+ + + Sbjct: 65 LVGGSVRDALLGRLGNDVDFTTDARPETILEILEHFADITWDTGIEYGTVSAEKSGQQIE 124 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD--------------QQGK 134 ITT RSD I DG R +VVF D +RRDFTINA+ + + + Sbjct: 125 ITTFRSD-IYDGESRNPEVVFGDTLAGDLVRRDFTINAMAVEITSAPDAAGATPAAAELE 183 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 D +GG DL I +D LR+LR RF + G S + + Sbjct: 184 FFDPMGGFADLMKGVIDTPAAPDQSFADDPLRLLRAARFSSQL--------GFAVSDRVR 235 Query: 195 KGLKILSS-------ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + L+S ER+ E++K+L P I M G+ +F ++ + L Q Sbjct: 236 AAMTDLASEIQRITVERVQVELDKMLLGAQPWLGIDLMVTTGLADYVFPELPRLQLAQ 293 >gi|258544672|ref|ZP_05704906.1| multifunctional CCA protein [Cardiobacterium hominis ATCC 15826] gi|258520090|gb|EEV88949.1| multifunctional CCA protein [Cardiobacterium hominis ATCC 15826] Length = 358 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 25/276 (9%) Query: 31 IVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD+L+ L V D D A +L ++ + P S G + Sbjct: 5 LVGGAVRDALLGLPVHDRDWVVVGATAEEMLAQGFRQVGKDFPVFLHPQS---GEEYALA 61 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 R++ T R +A V +AD LRRD TINA+ G+++D GG D Sbjct: 62 RQER---KTGRGHQAFAFDFAPEV---SLEADLLRRDLTINAMAQAADGRLVDPYGGQAD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 ++ R ++ + A ED LR+LR RF+A + ++ L ++ A L+ L Sbjct: 116 VQARVLRHVSPA---FAEDPLRVLRLMRFYARFAPLGFSIAAETLALCRAMVAAGELQHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 S+ERIW+E K L + P + G + D + L ++ ++A E Sbjct: 173 SAERIWAECEKALASPAPQAFFSGLQAVGALNVLGFDASDAQLSAMNARLQAVLAIESSA 232 Query: 261 DSLLRFIVLISWQD-KKSILSMAKKFSLPREIRYFL 295 + R + + +D + ++ K LP+ RY+L Sbjct: 233 EH--RLAIWLQGEDCAAARTALQKALPLPKRYRYWL 266 >gi|240117553|ref|ZP_04731615.1| PcnB [Neisseria gonorrhoeae PID1] gi|268603255|ref|ZP_06137422.1| poly(A) polymerase [Neisseria gonorrhoeae PID1] gi|268587386|gb|EEZ52062.1| poly(A) polymerase [Neisseria gonorrhoeae PID1] Length = 451 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IG+A R ED +RILR R G E + + +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEQTAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|170698323|ref|ZP_02889398.1| poly(A) polymerase [Burkholderia ambifaria IOP40-10] gi|170136742|gb|EDT04995.1| poly(A) polymerase [Burkholderia ambifaria IOP40-10] Length = 512 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 24/189 (12%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R + Sbjct: 71 NAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRF 130 Query: 69 KVIPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFT 110 +++ I++ + D L+ D + GR + Sbjct: 131 QIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASGRVLRDNVW 190 Query: 111 RDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 191 GEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYREDPVRMLR 250 Query: 170 FFRFFAHYG 178 RF A G Sbjct: 251 VVRFAAKLG 259 >gi|304396860|ref|ZP_07378740.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pantoea sp. aB] gi|304355656|gb|EFM20023.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pantoea sp. aB] Length = 421 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 157/369 (42%), Gaps = 73/369 (19%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+NL V D D + T P+ ++ + + P + + R+ Sbjct: 13 KTFLVGGAVRDALLNLPVTDKDWVVTGSTPEAMLEQGYQQVGRDFPV-----FLHPVSRE 67 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKA-------DSLRRDFTINALYADQQGKVIDYV 139 +Y T R + G+ T W A D RRD TINA+ D+ G+++D Sbjct: 68 EYALARTERKN----GKGYTGFVT--WSAPDVTLEQDLQRRDLTINAIAQDENGELVDPY 121 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKK 195 G D+ R ++ + +A ED LR+LR RF A + N ++ L+ + Sbjct: 122 NGQRDIALRLLRHVSEAFS---EDPLRVLRVARFAARFAHLNFRIAPETQQLMQQMAESG 178 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L L++ER+W E K L A+NP ++ ++ D + QV Sbjct: 179 ELSNLTAERVWKETEKALSARNP----------QVYFQVLRDCGAL------------QV 216 Query: 256 FEWKIDSLLRFIVLISWQDK-----KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++D+L I W + +++++A +L EI + F+ K L+ Sbjct: 217 LFPELDNLFGIPAPIKWHPEIDTGVHTLMTLAMAAALSSEIDVRFATLFHD--VGKALTP 274 Query: 311 PEIKKLFYLYG------DKVMIAKLKI--------FLALHYNNLTH----QDTCFILQVL 352 PE+ + +G + + +L++ + ++++ H Q ++ + Sbjct: 275 PELWPSHHGHGLAGVPLVEALCQRLRVPNAIRDLALIVTEFHDIVHTIERQSPASLVALF 334 Query: 353 SDIIHWKKP 361 I W+KP Sbjct: 335 DRIDAWRKP 343 >gi|121605882|ref|YP_983211.1| poly(A) polymerase [Polaromonas naphthalenivorans CJ2] gi|120594851|gb|ABM38290.1| poly(A) polymerase [Polaromonas naphthalenivorans CJ2] Length = 540 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 35/260 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D ++++ +L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 47 DERAMDVVHVLKQAGFQAYIVGGAVRDLLVGLRPKDFDVATDATPEQVKSLFRRAFIIGR 106 Query: 67 RYKVIPTSISYG------TIKIICRKKYFDIT----------TLRSDLI-------TDGR 103 R++++ + YG I++ + + D T +S+L + GR Sbjct: 107 RFRIV--HVIYGRGREHEVIEVSTFRAHMDNALAEQVGGNERTSKSELAGMKHAVHSSGR 164 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + + D+ RRDFTINA+Y D + + V+DY G+ D + + ++ IG+ R E Sbjct: 165 VLRDNVWGPMEEDAARRDFTINAMYYDPETEIVVDYHNGIGDAKKKIVRMIGNPALRYRE 224 Query: 163 DYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A + A +K G L + R++ E+ KLL+ + L Sbjct: 225 DPVRIIRAVRFGAKLNALGFKFEEKTSAPLKEMCGLLADVPQSRLFDEMLKLLQTGHSLA 284 Query: 221 AIVHMYNGGIFKEIF--LDV 238 +I + G+ I+ LDV Sbjct: 285 SIAQLKELGMGTGIYPLLDV 304 >gi|293399437|ref|ZP_06643590.1| poly(A) polymerase [Neisseria gonorrhoeae F62] gi|291610006|gb|EFF39128.1| poly(A) polymerase [Neisseria gonorrhoeae F62] Length = 451 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 12/203 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 43 NVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + + ++ + ++TT R GR K + D++RRDFT NALY D + Sbjct: 99 FQIVHVMNGAEIIEVTTFRGGAKGHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPE 158 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVAS 190 + +++D+ G+ D+ R + IG+A R ED +RILR R G E + + +A Sbjct: 159 KEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEQTAAPIAE 218 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 + LK R++ EI KLL Sbjct: 219 SICR--LKHEPVARLFDEIMKLL 239 >gi|167586239|ref|ZP_02378627.1| poly(A) polymerase [Burkholderia ubonensis Bu] Length = 460 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 22/185 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 24 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 83 Query: 71 IPTSISYGTIKIICRKKYFDITT--------LRSDLI--------TDGRYAKVVFTRDWK 114 + I++ + D L+ D + GR + + Sbjct: 84 VHVQFGQELIEVSTFRALVDPPPAEAEPPKRLKRDELDRRTHAVDASGRVLRDNVWGEQH 143 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 144 EDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVVRF 203 Query: 174 FAHYG 178 A G Sbjct: 204 AAKLG 208 >gi|225352359|ref|ZP_03743382.1| hypothetical protein BIFPSEUDO_03976 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156866|gb|EEG70235.1| hypothetical protein BIFPSEUDO_03976 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 487 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ D+D T+ P++ ++R F + + + +GT+ + R+ Sbjct: 38 ALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDM--GRKFGTLGAMRRR 95 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYV 139 + ++TT RSD D R +V + + D RRDFT+NA+ + + +D Sbjct: 96 EDGTEVQVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPELEFVDPF 155 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG NDL ++ D +D LR++R RF A G + I+ + A ++I Sbjct: 156 GGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALTDMVDRIEI 214 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ K+L + P I + + G+ +F ++ + L ++ + + VFE Sbjct: 215 VSAERVRDELVKMLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRHKDVFEHT 273 Query: 260 IDSLLRFIVLISWQD 274 + + R + L + D Sbjct: 274 MIVIDRAVALETGPD 288 >gi|145627734|ref|ZP_01783535.1| hypothetical protein CGSHi22121_01815 [Haemophilus influenzae 22.1-21] gi|145639916|ref|ZP_01795516.1| hypothetical protein CGSHiII_00562 [Haemophilus influenzae PittII] gi|144979509|gb|EDJ89168.1| hypothetical protein CGSHi22121_01815 [Haemophilus influenzae 22.1-21] gi|145271007|gb|EDK10924.1| hypothetical protein CGSHiII_00562 [Haemophilus influenzae PittII] gi|309751094|gb|ADO81078.1| tRNA nucleotidyltransferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Haemophilus influenzae R2866] Length = 416 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 14/217 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYLQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E K L KNP ++ G +F ++ Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|309973279|gb|ADO96480.1| tRNA nucleotidyltransferase/23-cyclic phosphodiesterase/2nucleotidase and phosphatase [Haemophilus influenzae R2846] Length = 416 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 101/214 (47%), Gaps = 14/214 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGA+RD L+ L V+D D I P ++ + + K P ++ T +++Y Sbjct: 5 LVGGAIRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G T + D +RRD TINA+ + G++ID GG DL NR Sbjct: 60 LARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQREDGEIIDPYGGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A Y ++ L+A + L+ L++ER Sbjct: 120 ILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELQHLTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E K L KNP ++ G +F ++ Sbjct: 177 VWLETEKALNEKNPEIYFETLHKTGALSVLFPEI 210 >gi|301155973|emb|CBW15443.1| poly(A) polymerase I [Haemophilus parainfluenzae T3T1] Length = 419 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 28/240 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------R 67 + I ++ L + + IVGG +RD L+ +D D+AT PD++ +F + R Sbjct: 5 NAITVVEKLQRQGYDAYIVGGCLRDLLLGKHPKDFDVATNARPDQIQAVFQRQCRLVGRR 64 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTL----RSD---LITDGRYAKVVFTRDWKADSLR 119 +++ I++ R + D + +SD L+ D Y + + D+ R Sbjct: 65 FRLAHIMFGRDVIEVATFRASHSDARSENQAKQSDEGMLLRDNVYGTI------EQDAER 118 Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-- 176 RDFT+NALY + Q + DY G++DL+N ++ IGD R ED +R+LR RF A Sbjct: 119 RDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSVRFMAKLD 178 Query: 177 -YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + EK S+ + + LK + R++ E KLL++ N + + G+F+++F Sbjct: 179 MFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQSGNGVKTYKLLRQYGLFEQLF 234 >gi|24372461|ref|NP_716503.1| polyA polymerase [Shewanella oneidensis MR-1] gi|24346447|gb|AAN53948.1|AE015532_8 polyA polymerase [Shewanella oneidensis MR-1] Length = 438 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 16/237 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 18 ENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDF 122 + I+ + ++ T R S +GR + + D+ RRDF Sbjct: 74 VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRDF 133 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR R FA Sbjct: 134 TVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAVR-FATKLSMT 192 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ID + LK + + R++ E+ KL A + M +F +F V Sbjct: 193 IDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAVANFDMMQEYKLFAPLFPQV 249 >gi|308185719|ref|YP_003929850.1| poly(A) polymerase [Pantoea vagans C9-1] gi|308056229|gb|ADO08401.1| poly(A) polymerase [Pantoea vagans C9-1] Length = 479 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R Sbjct: 54 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRLVGRR 113 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + + D + R + RD + D+ RRD Sbjct: 114 FRLAHVMFGPEVIEVATFRGHHQVEEIAEDRNSSQRAQSGMLLRDNIFGSIEDDAQRRDL 173 Query: 123 TINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY V DYVGG++DL I+ IGD R ED +R+LR RF A + Sbjct: 174 TINSLYYSVADFSVRDYVGGISDLEQGIIRLIGDPETRYREDPVRMLRVARFAAKLN-MS 232 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L+ + R++ E KLL+A + + + +F+ +F Sbjct: 233 IAPETAEPIPRLASLLRDIPPARLFEESLKLLQAGYGYSTYLKLCEYQLFQPLF 286 >gi|91774955|ref|YP_544711.1| poly(A) polymerase [Methylobacillus flagellatus KT] gi|91708942|gb|ABE48870.1| poly(A) polymerase [Methylobacillus flagellatus KT] Length = 452 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 14/175 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I L K ++ IVGGAVRD L+ +D D+AT P++V RIF ++R Sbjct: 48 IKTTDALQKAGFEAFIVGGAVRDLLLKKRPKDFDVATDATPEQVHRIFRRSRI----IGR 103 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT----RD-----WKADSLRRDFTINA 126 + + ++ + +++T R + + AKV + RD + D+ RRDFT NA Sbjct: 104 RFRLVHVMFGDETIEVSTFRGSHLAEAGDAKVTDSGRILRDNVFGSQEEDAARRDFTANA 163 Query: 127 LYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 LY D +V+D+ G+ DL+ ++ IGD R ED +R+LR R A G K Sbjct: 164 LYYDPSTEEVLDFHRGVADLQAGVLRMIGDPVTRYREDPVRMLRAVRLSAKLGLK 218 >gi|171320262|ref|ZP_02909318.1| poly(A) polymerase [Burkholderia ambifaria MEX-5] gi|171094491|gb|EDT39549.1| poly(A) polymerase [Burkholderia ambifaria MEX-5] Length = 516 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 73 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFTRD 112 + I++ + D L+ D + GR + + Sbjct: 133 VHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASGRVLRDNVWGE 192 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 QHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVV 252 Query: 172 RFFAHYG 178 RF A G Sbjct: 253 RFAAKLG 259 >gi|115350706|ref|YP_772545.1| poly(A) polymerase [Burkholderia ambifaria AMMD] gi|115280694|gb|ABI86211.1| poly(A) polymerase [Burkholderia ambifaria AMMD] Length = 461 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 18 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 77 Query: 71 IPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFTRD 112 + I++ + D L+ D + GR + + Sbjct: 78 VHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASGRVLRDNVWGE 137 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 138 QHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVV 197 Query: 172 RFFAHYG 178 RF A G Sbjct: 198 RFAAKLG 204 >gi|262163987|ref|ZP_06031726.1| poly(A) polymerase [Vibrio mimicus VM223] gi|262027515|gb|EEY46181.1| poly(A) polymerase [Vibrio mimicus VM223] Length = 413 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 18/247 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPTSISYGTIKI 82 ++ +VGG VRD L+ +D D+AT P+++ ++F R +++ +++ Sbjct: 7 EAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEV 66 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFTINALY---ADQQGKVI 136 + + T+ ++ ++ + D+ RRDFTINA+Y AD + Sbjct: 67 ATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADY--SIH 124 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 DY GG+ DL +R ++ IGD R ED +R+LR RF + +I+ D Sbjct: 125 DYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFDIEEDTAEPIEHLAPL 183 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVIEAEQV 255 L+ + + R++ E K+L+A + L M +F+++F + E + D SQ EQ+ Sbjct: 184 LRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEHFTADHSSQT---EQM 240 Query: 256 FEWKIDS 262 + +D+ Sbjct: 241 LDLVLDA 247 >gi|90416970|ref|ZP_01224899.1| poly(A) polymerase [marine gamma proteobacterium HTCC2207] gi|90331317|gb|EAS46561.1| poly(A) polymerase [marine gamma proteobacterium HTCC2207] Length = 453 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 17/214 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + D ++ +L K ++ +VGG VRD L+ L +D D+AT+ P V +F ++R Sbjct: 37 NRDAFKVVDVLQKAGFEAYVVGGCVRDLLIGLKPKDFDVATSAKPWEVKELFRRSRI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD---LITDGRYAKV---VFTRD-----WKADSLRR 120 + + + ++ ++TT RS+ + R + + TRD + D+ RR Sbjct: 94 -IGRRFQIVHVQFSREIIEVTTFRSNSSQSTSKNRRQQTDSGMLTRDNVFGTVEEDASRR 152 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 D T+NALY D I D+ G++D+ + I+ IGD R ED +R+LR RF A G Sbjct: 153 DLTVNALYYDPSTNSIHDFTNGIDDVDAKIIRIIGDPETRFREDPVRLLRVARFAAKLG- 211 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 NI+ L+ +S R++ E KL Sbjct: 212 FNIEPATANPMKHRAADLQQVSPPRLFDETLKLF 245 >gi|257063275|ref|YP_003142947.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia heliotrinireducens DSM 20476] gi|256790928|gb|ACV21598.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia heliotrinireducens DSM 20476] Length = 454 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 19/200 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ VGG VRD L+ +DIDI +P D + RI S+ +V S+G I K Sbjct: 22 RTFYVGGMVRDRLLGRENKDIDIEVHGIPADELGRILSEL-GEVTAMGASFG---IFGLK 77 Query: 87 KY-FDITTLRSDLITDGRYAK--VVFTRDW---KADSLRRDFTINALYADQ-QGKVIDYV 139 Y DI R + T GR K VFT + + ++RRDFT+NAL D G+V+D+ Sbjct: 78 HYDVDIAMPRKENAT-GRGHKDFEVFTDPFLGPEKAAMRRDFTMNALMEDVLTGEVLDFF 136 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG D+R I+ + D ED LR+LR +F A +G + D ++ ++ L Sbjct: 137 GGQEDMRRGVIRHVND--RTFAEDPLRVLRAAQFAARFGFRVADE---TVALSSRMDLSA 191 Query: 200 LSSERIWSEINK-LLEAKNP 218 LSSERI E++K +L+A P Sbjct: 192 LSSERIVGEMDKAMLKAAKP 211 >gi|198277607|ref|ZP_03210138.1| hypothetical protein BACPLE_03829 [Bacteroides plebeius DSM 17135] gi|198270105|gb|EDY94375.1| hypothetical protein BACPLE_03829 [Bacteroides plebeius DSM 17135] Length = 536 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 11/231 (4%) Query: 18 ILSLLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 I SL+++ D+ C +VGG VRD +N +DID+ + + F K + Sbjct: 71 IFSLISETADELGLECYVVGGYVRDIFLNRPSKDIDVVVVGSGIEMAQAFGKKLGRGAHV 130 Query: 74 SI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----L 127 S+ ++GT ++ + + R + + +V + D RRDFTINA L Sbjct: 131 SVFKNFGTAQVKFKDTEVEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINAMAVCL 190 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + G+++D GGL+DL+ RTI+ D +D LR++R RF ID + Sbjct: 191 NKARFGELVDPFGGLDDLKERTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDETF 249 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 A + K+ +KI+S ERI E+NK+L + P + + G+ + IF ++ Sbjct: 250 EALERNKERIKIISRERIADELNKILLSPVPSKGFIDLDRCGLLELIFPEL 300 >gi|226946294|ref|YP_002801367.1| polynucleotide adenylyltransferase PcnB [Azotobacter vinelandii DJ] gi|226721221|gb|ACO80392.1| polynucleotide adenylyltransferase; PcnB [Azotobacter vinelandii DJ] Length = 463 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 19/213 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 ++++ L ++ +VGG VRD L+++ +D D+AT+ P++V F R +K+ Sbjct: 42 VSVVERLQNAGYQAYVVGGCVRDLLLDIEPKDFDVATSATPEQVRAEFRNARVIGRRFKL 101 Query: 71 IPTSISYGTIKIICRKKYFDIT---------TLRSDLITDGRYAKVVFTRDWKADSLRRD 121 I++ + + +R + GR + + D+ RRD Sbjct: 102 AHVHFGREIIEVATFRAHHPDDEEDDEDNHLAMRHE---SGRILRDNVYGTLEEDAQRRD 158 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINALY D +++DY G++D+RN ++ IGD R LED +R+LR RF A + Sbjct: 159 FTINALYFDIAHDRILDYAHGVHDIRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKL-DF 217 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +I+ + L+ + + R++ E+ KL Sbjct: 218 DIEHHSAAPIRRLAPLLRDIPAPRLFDEVLKLF 250 >gi|305681647|ref|ZP_07404453.1| tRNA adenylyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305658807|gb|EFM48308.1| tRNA adenylyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 506 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 32/238 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+ ++ I T I YGT+ + + Sbjct: 40 LVGGSVRDALLGRLGNDVDFTTDARPETILEILEHFADITWDTGIEYGTVSAEKSGQQIE 99 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYAD--------------QQGK 134 ITT RSD I DG R +VVF D +RRDFTINA+ + + + Sbjct: 100 ITTFRSD-IYDGESRNPEVVFGDTLAGDLVRRDFTINAMAVEITSAPDAAGATPAAAELE 158 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 D +GG DL I +D LR+LR RF + G S + + Sbjct: 159 FFDPMGGFADLMKGVIDTPAAPDQSFADDPLRLLRAARFSSQL--------GFTVSDRVR 210 Query: 195 KGLKILSS-------ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + L+S ER+ E++K+L P I M G+ +F ++ + L Q Sbjct: 211 AAMTDLASEIQRITVERVQVELDKMLLGAQPWLGIDLMVTTGLADYVFPELPRLQLAQ 268 >gi|254784780|ref|YP_003072208.1| poly(A) polymerase [Teredinibacter turnerae T7901] gi|237686559|gb|ACR13823.1| putative poly(A) polymerase [Teredinibacter turnerae T7901] Length = 463 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 17/173 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I LL+ G + + +VGG VRD L+ +D D+AT+ P+++ IF R + Sbjct: 49 IDQLLDAGYE-AYLVGGGVRDLLLGGKPKDFDVATSATPEQLRGIFRNARI----IGKRF 103 Query: 78 GTIKIICRKKYFDITTLRSD--LITDGRYAKV----VFTRD-----WKADSLRRDFTINA 126 + + ++ ++TT R + + D + AK V RD K D+ RRDFT+NA Sbjct: 104 QIVHVRFGREIIEVTTFRDNHAVADDNQQAKQSEHGVLLRDNVYGNLKTDAERRDFTVNA 163 Query: 127 LYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 LY + + + ++++ GL DL +R I+ +GD R ED +R+LR RF A G Sbjct: 164 LYYNPRSRELLEFSTGLEDLNDRVIRIVGDPQTRYREDPVRLLRAVRFAAKLG 216 >gi|211638719|emb|CAR67336.1| poly(a) polymerase (ec 2.7.7.19) (pap) (plasmid copy number protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 494 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 11/171 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LNK + +VGG VRD L+ +D DIAT P++V ++F R + Sbjct: 74 NALKVLYRLNKSGFDAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRLVGRRF 133 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFT 123 ++ I++ + + T ++ + + RD + D++RRDFT Sbjct: 134 RLAHIMFGPEVIEVATFRGPHEQTDANNEKNQSQQAQSGMLLRDNTFGSIEEDAMRRDFT 193 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 IN+LY + DYVGGLNDL I+ IGD R ED +R+LR RF Sbjct: 194 INSLYYGINDFSLRDYVGGLNDLETGVIRLIGDPETRYREDPVRMLRAIRF 244 >gi|71279421|ref|YP_270960.1| polyA polymerase [Colwellia psychrerythraea 34H] gi|71145161|gb|AAZ25634.1| polyA polymerase [Colwellia psychrerythraea 34H] Length = 474 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 112/254 (44%), Gaps = 24/254 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNKG + +VGG VRD L+ +D DIAT PD + +F R Sbjct: 49 PNALKVLYRLNKGGFDAYLVGGGVRDILLGFKPKDFDIATNATPDEIKELFRNCRL---- 104 Query: 73 TSISYGTIKIICRKKYFDITTLR----------------SDLITDGRYAKVVFTRDWKAD 116 + I+ ++ ++ T R S DG + + D Sbjct: 105 IGRRFRLAHIVFGREIIEVATFRGHHDNASEQEKSCKKTSKQSEDGMLLRDNIYGSIEED 164 Query: 117 SLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY + KV D+ G+ D+ ++ I+ IGD R ED +R+LR R FA Sbjct: 165 AERRDFTINALYYSAKDFKVYDFANGVQDVNDKVIRLIGDPETRYREDPVRMLRAIR-FA 223 Query: 176 HYGEKNIDSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + I SD A IK L + + R++ E K+ A + + + +F Sbjct: 224 TKLDMQI-SDDTKAPIKELSTLMANIPAARLFEEFLKMFIAGKAVANFEQLRSYNLFGYF 282 Query: 235 FLDVQEISLDQLSQ 248 F V++ D+ Q Sbjct: 283 FPAVEQALNDESDQ 296 >gi|262401705|ref|ZP_06078271.1| poly(A) polymerase [Vibrio sp. RC586] gi|262352122|gb|EEZ01252.1| poly(A) polymerase [Vibrio sp. RC586] Length = 457 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 18/262 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFTI 124 +++ +++ + + T+ ++ ++ + D+ RRDFTI Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTI 155 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 NA+Y AD + DY GG+ DL +R ++ IGD R ED +R+LR RF + + Sbjct: 156 NAMYYNIADY--SIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 212 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE- 240 I+ D L+ + + R++ E K+L+A + L M +F+++F + E Sbjct: 213 IEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMREYNLFQQLFPTIAEH 272 Query: 241 ISLDQLSQVIEAEQVFEWKIDS 262 + D SQ EQ+ + +D+ Sbjct: 273 FTSDHSSQT---EQMLDLVLDA 291 >gi|251788433|ref|YP_003003154.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya zeae Ech1591] gi|247537054|gb|ACT05675.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya zeae Ech1591] Length = 415 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 159/355 (44%), Gaps = 51/355 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V + D + P+ +++ + + P + T +++Y Sbjct: 5 LVGGAVRDGLLGRPVTERDWVVVGATPEMLLQQGYQQVGRDFPVFLHPQT-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + + D RRD TINA+ D+ G++ID GG DL+NR Sbjct: 60 LARTERKSGNGYTGFTCQATPDITLEDDLQRRDLTINAIAQDEDGQLIDPYGGRRDLQNR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 ++ + +A ED LR+LR RF +AH G + + + A+ G L L+ ER Sbjct: 120 LLRHVSEA---FSEDPLRVLRVARFAARYAHLGFQIAEETLHLMQAMARDGELDFLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E K L+ +NP + + G +F +V D+L V A + +ID+ + Sbjct: 177 VWKETEKALDTQNPQVYFQVLRDCGALAILFPEV-----DRLYGV-PAPATWHPEIDTGI 230 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-- 322 ++ L+MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 231 HTMM---------SLAMAARLSPALDVRFATL----CHDLGKGLTPPELWPRHHGHGAAG 277 Query: 323 ----KVMIAKLKIFLAL--------HYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ AL Y++L H +L++ I W+KP Sbjct: 278 VPLVEALCQRLRVPNALRDLACLVAEYHDLIHTVQMLQAKTLLKLFDAIDVWRKP 332 >gi|66047861|ref|YP_237702.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. syringae B728a] gi|75500344|sp|Q4ZMF8|CCA_PSEU2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|63258568|gb|AAY39664.1| Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain [Pseudomonas syringae pv. syringae B728a] Length = 408 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL+ Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLQA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + A LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSASGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|145597083|ref|YP_001161380.1| HDIG domain-containing protein [Salinispora tropica CNB-440] gi|145306420|gb|ABP57002.1| HDIG domain protein [Salinispora tropica CNB-440] Length = 485 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 5/254 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PD+ +RI + T +GTI + + Sbjct: 48 LVGGSVRDALLGRLGDDLDFCTDAHPDQTLRIVRGWAEAIWETGREFGTIGVQRDGLRLE 107 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 ITT R+++ R V + D RRDFT+NA+ + + ID GGL DL + Sbjct: 108 ITTFRAEVYDQVSRNPVVQYGTSLAEDLKRRDFTVNAMAVSLPEHRFIDPHGGLADLAAK 167 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR+LR RF A + D A ++ L +++ERI E Sbjct: 168 VVRTPAAPEESFRDDPLRMLRAARFAAQL-RFAVHPDVRAAMVRMAADLDRITAERIRDE 226 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 KLL +P+ + + + G+ + ++ + L ++ + + + V+E + +++R V Sbjct: 227 FTKLLCGADPIAGLRLLADTGLAERFLPELTGLKL-EIDEHAQHKDVYEHTL-TVVRNAV 284 Query: 269 LISWQDKKSILSMA 282 IL MA Sbjct: 285 TYEEDGCDFILRMA 298 >gi|325524972|gb|EGD02896.1| poly(A) polymerase [Burkholderia sp. TJI49] Length = 511 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 72 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 131 Query: 71 IPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFTRD 112 + I++ + D L+ D + GR + + Sbjct: 132 VHVQFGQELIEVSTFRALVDAPPEAAAAEPPKRLKRDELDRRTHAVDASGRVLRDNVWGE 191 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 192 QHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVV 251 Query: 172 RFFAHYG 178 RF A G Sbjct: 252 RFAAKLG 258 >gi|300113450|ref|YP_003760025.1| poly(A) polymerase [Nitrosococcus watsonii C-113] gi|299539387|gb|ADJ27704.1| poly(A) polymerase [Nitrosococcus watsonii C-113] Length = 428 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 12/204 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 +N+L L K + +VGG VRD L+ +D D+ T P+++ +F R Sbjct: 26 LNVLYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLFRSCRL----VGR 81 Query: 76 SYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130 + + ++ + T R L +GR + D+ RRDF++NALY D Sbjct: 82 RFRLAHLRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDAWRRDFSVNALYYDI 141 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVA 189 + V+DY GG+ DL ++ IGD R ED +R+LR RF A G + DS+ + Sbjct: 142 RDFSVVDYTGGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLGFTLHADSEAPIW 201 Query: 190 SIKAKKGLKILSSERIWSEINKLL 213 + + L+ + S R++ EI KL Sbjct: 202 ELAS--SLQEIPSARLFEEILKLF 223 >gi|110804198|ref|YP_687718.1| poly(A) polymerase I [Shigella flexneri 5 str. 8401] gi|110613746|gb|ABF02413.1| poly(A) polymerase I [Shigella flexneri 5 str. 8401] Length = 454 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLSM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 R-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|262172326|ref|ZP_06040004.1| poly(A) polymerase [Vibrio mimicus MB-451] gi|261893402|gb|EEY39388.1| poly(A) polymerase [Vibrio mimicus MB-451] Length = 457 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 18/262 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFTI 124 +++ +++ + + T+ ++ ++ + D+ RRDFTI Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTI 155 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 NA+Y AD + DY GG+ DL +R ++ IGD R ED +R+LR RF + + Sbjct: 156 NAMYYNIADY--SIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 212 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE- 240 I+ D L+ + + R++ E K+L+A + L M +F+++F + E Sbjct: 213 IEEDTAEPIEYLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEH 272 Query: 241 ISLDQLSQVIEAEQVFEWKIDS 262 + D SQ EQ+ + +D+ Sbjct: 273 FTADHSSQT---EQMLDLVLDA 291 >gi|253997249|ref|YP_003049313.1| poly(A) polymerase [Methylotenera mobilis JLW8] gi|253983928|gb|ACT48786.1| poly(A) polymerase [Methylotenera mobilis JLW8] Length = 480 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 17/226 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 I + L K ++ IVGGAVRD L+ +D D+AT P+ V R+F ++ R+++ Sbjct: 76 IKTIEGLQKAGFEAYIVGGAVRDLLLQREPKDFDVATDATPEEVNRVFRRSRIIGRRFRL 135 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--GRYAKVVFTRDWKADSLRRDFTINALY 128 + TI++ + + + + D T+ GR + + D+ RRDFT NALY Sbjct: 136 VHVLFGDETIEVSTFRGHHEA---KGDAHTNESGRIIRDNVFGSLEEDATRRDFTANALY 192 Query: 129 ADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D + V+D+ G D++ ++ IG R ED +R+LR R A G K ID + Sbjct: 193 YDPTSEIVLDFHQGFADIQAGILRMIGKPETRYAEDPVRMLRVVRLSAKLGLK-IDPATM 251 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV-----HMYNG 228 K L+ + R++ E+ KL + + + ++ H+++G Sbjct: 252 APIAKMADLLQDVPPSRLFDEMLKLFLSGHAIESVSALREQHLHHG 297 >gi|322834354|ref|YP_004214381.1| poly(A) polymerase [Rahnella sp. Y9602] gi|321169555|gb|ADW75254.1| poly(A) polymerase [Rahnella sp. Y9602] Length = 568 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 16/216 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 + + +L LNK ++ +VGG VRD L++ +D DI T PD+V ++F R Sbjct: 145 ENALKVLYRLNKSGFEAFLVGGGVRDLLLDKKPKDFDITTNATPDQVRKLFRNCRLVGRR 204 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + D + + RD + D+ RRDF Sbjct: 205 FRLAHVMFGPEIIEVATFRGHHEQHEETEDKNVSQQAVNGMLLRDNIFGTIEDDAQRRDF 264 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 TIN+LY AD V DY GGL DL N I+ IGD R ED +R+LR RF A Sbjct: 265 TINSLYYGVAD--FTVRDYTGGLRDLENGIIRLIGDPETRYREDPVRMLRAVRFAAKLDM 322 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 K I + + L+ + R++ E KLL+A Sbjct: 323 K-ISPETAEPIPRLATLLQEIPPARLFEESLKLLQA 357 >gi|291086145|ref|ZP_06354946.2| polyA polymerase [Citrobacter youngae ATCC 29220] gi|291069510|gb|EFE07619.1| polyA polymerase [Citrobacter youngae ATCC 29220] Length = 454 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R +D T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGSEADRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVAD--FTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRMLRAVRFAAKL 208 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL+A + +F+ +F Sbjct: 209 -DMRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREYSLFQPLF 265 >gi|183600088|ref|ZP_02961581.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827] gi|188022373|gb|EDU60413.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827] Length = 523 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 11/212 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F R + Sbjct: 101 NALKVLYRLNKNGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQIRKLFRNCRLVGRRF 160 Query: 69 KVIPTSISYGTIKIICRKKYFDITTL----RSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 ++ I++ + + D RS +G + + D++RRDFT+ Sbjct: 161 RLAHIMFGPEVIEVATFRGHHDQIESEDKNRSQQAKNGMLLRDNIFGSIEEDAIRRDFTV 220 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 N+LY + V DYVGGLNDL+ I+ IGD R ED +R+LR RF + I+ Sbjct: 221 NSLYYNIDDFSVRDYVGGLNDLKAGIIRLIGDPETRYREDPVRMLRAVRFACKL-DMRIE 279 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + + L+ + S R++ E KLL+A Sbjct: 280 PNTAQPIQRLAPLLREIPSARLFEESLKLLQA 311 >gi|90412020|ref|ZP_01220027.1| putative polyA polymerase [Photobacterium profundum 3TCK] gi|90326998|gb|EAS43377.1| putative polyA polymerase [Photobacterium profundum 3TCK] Length = 449 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 22/244 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNKG + +VGG VRD L++ +D DIAT P+ + +F R Sbjct: 18 ENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQPKDFDIATNATPEEIKSLFRNCRLIGRR 77 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKA---------- 115 +++ I++ + + ++ ++ D + + + ++ + Sbjct: 78 FRLAHILFGRDVIEVATFRGHHSDAPVKVEIKDKADAKGKQQISSKSQEGMLLRDNVYGT 137 Query: 116 ---DSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y + V DY G+ DL NR ++ +GD R ED +R+LR Sbjct: 138 IDEDAERRDFTINAMYYSAKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVRMLRAV 197 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A + I+ + L+ + S R++ E KLL+A L + +F Sbjct: 198 RFAAKL-DMTIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAGQGLATYKLLRQYNLF 256 Query: 232 KEIF 235 +++F Sbjct: 257 QQLF 260 >gi|330961069|gb|EGH61329.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 409 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ L V D+D M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGLPVTDVDWVVVGASTEEMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYQGQRDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y E ++ L+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAEHGFSIAPETMDLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L K P I +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEKQPQVFIQVLHDCGALNELMPEVEAL 213 >gi|107021834|ref|YP_620161.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054] gi|105892023|gb|ABF75188.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054] Length = 518 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 26/189 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 73 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT------------LRSDLI--------TDGRYAKVVFT 110 + I++ + D L+ D + GR + Sbjct: 133 VHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVDASGRVLRDNVW 192 Query: 111 RDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 GEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLR 252 Query: 170 FFRFFAHYG 178 RF A G Sbjct: 253 VVRFAAKLG 261 >gi|54310261|ref|YP_131281.1| putative polyA polymerase [Photobacterium profundum SS9] gi|46914702|emb|CAG21479.1| putative polyA polymerase [Photobacterium profundum SS9] Length = 449 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 30/248 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNKG + +VGG VRD L++ +D DIAT P+ + +F R Sbjct: 18 ENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQPKDFDIATNATPEEIKSLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR---SDLIT--------DGRYAKVVFTRDWKA------ 115 + I+ + ++ T R SD+ D + + V ++ + Sbjct: 74 IGRRFRLAHILFGRDVIEVATFRGHHSDVPAKVEIKDKADEKGKQQVSSKSQEGMLLRDN 133 Query: 116 -------DSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 D+ RRDFTINA+Y + V DY G+ DL NR ++ +GD R ED +R+ Sbjct: 134 VYGTIDEDAERRDFTINAMYYSAKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVRM 193 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 LR RF A + I+ + L+ + S R++ E KLL+A L + Sbjct: 194 LRAVRFAAKL-DMTIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAGQGLATYKLLRQ 252 Query: 228 GGIFKEIF 235 +F+++F Sbjct: 253 YNLFQQLF 260 >gi|253988289|ref|YP_003039645.1| poly(A) polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779739|emb|CAQ82900.1| poly(A) polymerase [Photorhabdus asymbiotica] Length = 523 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 11/171 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LNK + +VGG VRD L+ +D DIAT P++V ++F R + Sbjct: 103 NALKVLYRLNKSGFDAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRLVGRRF 162 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFT 123 ++ I++ + + T ++ + + RD + D++RRDFT Sbjct: 163 RLAHIMFGPEVIEVATFRGPHEQTDANNEKNQSQQAQSGMLLRDNTFGSIEEDAMRRDFT 222 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 IN+LY + DYVGGLNDL I+ IGD R ED +R+LR RF Sbjct: 223 INSLYYGINDFSLRDYVGGLNDLETGVIRLIGDPETRYREDPVRMLRAIRF 273 >gi|170732080|ref|YP_001764027.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3] gi|169815322|gb|ACA89905.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3] Length = 518 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 26/189 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 73 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT------------LRSDLI--------TDGRYAKVVFT 110 + I++ + D L+ D + GR + Sbjct: 133 VHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVDASGRVLRDNVW 192 Query: 111 RDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 GEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLR 252 Query: 170 FFRFFAHYG 178 RF A G Sbjct: 253 VVRFAAKLG 261 >gi|304311633|ref|YP_003811231.1| Poly(A) polymerase [gamma proteobacterium HdN1] gi|301797366|emb|CBL45586.1| Poly(A) polymerase [gamma proteobacterium HdN1] Length = 467 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 26/219 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-----TRYKVIP 72 +L L + + +VGG++RD L+ +S +D D+AT P+++ ++F R+++ Sbjct: 45 VLETLTQSGYSAYLVGGSIRDGLLGISPKDFDVATNATPEQIRQLFRSCRLIGQRFRLAH 104 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD------GRYAKV----------VFTRDWKAD 116 + I++ + + + ++ R A V VF + + D Sbjct: 105 VRMGREIIEVATFRGHHHPDDDDDESNSEEAGNQKPRRASVSDEGMILRDNVFGTEHE-D 163 Query: 117 SLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT NAL Y G ++D+VGG D+++R ++ IGD R ED +RILR RF A Sbjct: 164 AMRRDFTANALFYRLSDGAIVDHVGGFADIQSRRLRLIGDPDTRFREDPVRILRAIRFAA 223 Query: 176 HYGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLL 213 + ID + LV I+ G L + + R++ EI K+ Sbjct: 224 KL-DFAID-ETLVKPIRDLGGLLDHVPAARLFEEIQKMF 260 >gi|146310347|ref|YP_001175421.1| poly(A) polymerase I [Enterobacter sp. 638] gi|145317223|gb|ABP59370.1| poly(A) polymerase [Enterobacter sp. 638] Length = 437 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 23/242 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTSATPEQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLR--------SDLITDGRYAKVVFTRD-----WKADSLR 119 + ++ + ++ T R +D T R + RD + D+ R Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEAGAPADRTTSQRGQNGMLLRDNIFGSIEEDAQR 133 Query: 120 RDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RDFTIN+LY AD V D+VGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 134 RDFTINSLYYSVAD--FSVRDFVGGVQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAK 191 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I ++ + + + R++ E+ KLL+A + +F+ +F Sbjct: 192 LNMQ-ISAETAEPIPRLATLINDVPPARLFEEVLKLLQAGYGYETYKLLRENSLFQPLFP 250 Query: 237 DV 238 + Sbjct: 251 SI 252 >gi|333011530|gb|EGK30944.1| poly(A) polymerase family protein [Shigella flexneri K-272] Length = 454 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A + Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL-D 209 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 I + + L + R++ E KLL+A Sbjct: 210 MRISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|333021774|gb|EGK41023.1| poly(A) polymerase family protein [Shigella flexneri K-227] Length = 435 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 16 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 71 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 72 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 131 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A + Sbjct: 132 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL-D 190 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 I + + L + R++ E KLL+A Sbjct: 191 MRISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 226 >gi|323975694|gb|EGB70790.1| poly(A) polymerase [Escherichia coli TW10509] Length = 454 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A + Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL-D 209 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 I + + L + R++ E KLL+A Sbjct: 210 MRISPETAEPIPRLATLLNDIPPARLFEESLKLLQA 245 >gi|116515068|ref|YP_802697.1| hypothetical protein BCc_128 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256922|gb|ABJ90604.1| poly(A) polymerase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 407 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 24/215 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 + +L LNK ++ +VGG VRD L+ +D DIAT PD + ++F R Sbjct: 21 MKVLYRLNKLGYEAYLVGGGVRDLLLGKKPKDFDIATNAKPDEIRKLFKNCRLIGRRFII 80 Query: 68 ----YKVIPTSISYGTIKIICRKK----YFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +K +S K KK Y I T + L++D + K+ + D+ R Sbjct: 81 AHLIFKNEIIEVSTFRAKNNHLKKNNLYYKKIKTKKGILLSDNTFGKI------EEDAYR 134 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RD TINALY + + DY+GG+ D++ + I+ IG+A R ED +R+LR RF Sbjct: 135 RDITINALYYSIKDFGIRDYIGGIKDIKLKKIRLIGNAETRYREDPVRMLRVIRFSVQLN 194 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 +ID IK LK + S R+++E KL Sbjct: 195 M-HIDKKTEKPIIKLSNLLKEIPSARLFNESIKLF 228 >gi|290968749|ref|ZP_06560287.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781402|gb|EFD93992.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Megasphaera genomosp. type_1 str. 28L] Length = 446 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 5/164 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI--PTSIS 76 L L + ++ +VGGAVRD L++ D DI T P+ + ++ + + P + Sbjct: 9 LQALRQEGYEAYLVGGAVRDMLLHRKPHDYDIVTQARPEEIKQVAQRHGWSCTMQPGEV- 67 Query: 77 YGTIKIICRKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +G + + + T R ++ R + + + + D LRRDFTINAL +G+ Sbjct: 68 FGIVTVRVEGLSLETATYRKEVYGKDSHRPSDIWYATTLQEDMLRRDFTINALAMTAEGR 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 ++DYVGG DL+ + + +G+ R ED LR+ R R G Sbjct: 128 ILDYVGGQRDLKEKRLATVGEPVRRFREDGLRLFRACRLVGQLG 171 >gi|134294830|ref|YP_001118565.1| poly(A) polymerase [Burkholderia vietnamiensis G4] gi|134137987|gb|ABO53730.1| poly(A) polymerase [Burkholderia vietnamiensis G4] Length = 517 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 24/187 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L ++ +D D+AT P V R+F + R +++ Sbjct: 78 VRVTDTLQQAGFRAFIVGGAVRDLLFGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 137 Query: 71 IPTSISYGTIKIICRKKYFDITT----------LRSDLI--------TDGRYAKVVFTRD 112 + I++ + D L+ D + GR + + Sbjct: 138 VHVQFGQELIEVSTFRALVDAPPEAAPAEPPKRLKRDELDRRTHAVDASGRVLRDNVWGE 197 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 198 QHEDAARRDFTINAMYYDPSTQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVV 257 Query: 172 RFFAHYG 178 RF A G Sbjct: 258 RFAAKLG 264 >gi|116688781|ref|YP_834404.1| poly(A) polymerase [Burkholderia cenocepacia HI2424] gi|254246247|ref|ZP_04939568.1| Poly(A) polymerase [Burkholderia cenocepacia PC184] gi|116646870|gb|ABK07511.1| poly(A) polymerase [Burkholderia cenocepacia HI2424] gi|124871023|gb|EAY62739.1| Poly(A) polymerase [Burkholderia cenocepacia PC184] Length = 518 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 26/189 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 73 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 132 Query: 71 IPTSISYGTIKIICRKKYFDITT------------LRSDLI--------TDGRYAKVVFT 110 + I++ + D L+ D + GR + Sbjct: 133 VHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVDASGRVLRDNVW 192 Query: 111 RDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 193 GEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLR 252 Query: 170 FFRFFAHYG 178 RF A G Sbjct: 253 VVRFAAKLG 261 >gi|119478378|ref|ZP_01618386.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143] gi|119448587|gb|EAW29833.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143] Length = 462 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 36/265 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + +++ L K +VGG VRD L+ +D DIAT P++V ++F + R+K+ Sbjct: 49 LRVMTTLRKAGFAGFLVGGGVRDLLLGGRPKDFDIATDATPEQVRKLFHNSRIIGRRFKI 108 Query: 71 IPTSISYGTIKIICRKKYFDITTLRS-----DLITDGRYAK---------VVFTRD---- 112 + + +G ++ ++TT R + G+ + + RD Sbjct: 109 V--HVRFG-------REIIEVTTFRGTHEQVEQSPKGKRPQNQNSAQSKNGMLLRDNVFG 159 Query: 113 -WKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRDFTINAL Y V DY GL DL + I+ IGD R ED +R+LR Sbjct: 160 TVEEDAVRRDFTINALYYTTADFAVYDYTSGLRDLDEKIIRIIGDPETRYREDPVRMLRA 219 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A I+ + ++ L + + R++ E+ KLL + + M G+ Sbjct: 220 VRFAAKLN-FTIEKNTAKPILRLAPSLADIPAARMFDEVLKLLMSGYGADVYKLMQQYGL 278 Query: 231 FKEIFLDVQEISLDQLSQVIEAEQV 255 F+ +F Q L Q I EQ Sbjct: 279 FEPLFPQTQPC-LQQPQANILVEQA 302 >gi|323495885|ref|ZP_08100953.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326] gi|323319101|gb|EGA72044.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326] Length = 454 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 122/277 (44%), Gaps = 35/277 (12%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V K D+ L + L G D + +VGG VRDSL+ +D DIAT P+++ ++F Sbjct: 31 VSRKKISDNALKVLYRLHGAGFD-AYLVGGGVRDSLLGQQPKDFDIATNATPEQIRQLFK 89 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD----------------LITDGRYAKVV 108 R + I+ + ++ T R L+ D Y + Sbjct: 90 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKEGMLLRDNVYGTI- 144 Query: 109 FTRDWKADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 D+ RRDFTINA+Y AD + DY GG+ DL ++ ++ IGD R ED + Sbjct: 145 -----DEDAERRDFTINAMYYSIADY--SIHDYAGGIEDLEDKLVRLIGDPETRYREDPV 197 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 R+LR RF + +I+ D L+ + R++ E K+L++ + L M Sbjct: 198 RMLRAIRFAVKL-DFDIEEDTAAPIEDMAVLLRDIPPARLYEESLKMLQSGHGLETYHLM 256 Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F+++F + E + EQ+ + +DS Sbjct: 257 REYNLFQQLFPTIAEFFTEDYDS--PTEQMLDLVLDS 291 >gi|270158080|ref|ZP_06186737.1| multifunctional CCA protein [Legionella longbeachae D-4968] gi|289163654|ref|YP_003453792.1| tRNA nucleotidyltransferase [Legionella longbeachae NSW150] gi|269990105|gb|EEZ96359.1| multifunctional CCA protein [Legionella longbeachae D-4968] gi|288856827|emb|CBJ10638.1| tRNA nucleotidyltransferase [Legionella longbeachae NSW150] Length = 410 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 24/222 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V++ D + PD +++ + + P + T ++Y Sbjct: 5 LVGGAVRDQLLNLPVKERDWVVVGSSPDELLQKKFRQVGRDFPVFLHPET-----NEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRDW------KADSLRRDFTINALYADQQGKVIDYVGGLN 143 T R G Y F+ D+ + D RRD TINA+ D+QG++ID G Sbjct: 60 LARTERKS--APGYYG---FSCDFSKQVTLEEDLARRDLTINAIAMDEQGQLIDPYNGQQ 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HY-GEKNIDSDGLVASIKAKKG-LKI 199 DL+ R ++ + A +ED +R+LR RF A HY G K D + ++G L Sbjct: 115 DLKRRLLRHVSPA---FVEDPVRVLRVARFAARFHYLGFKLADETRSLMYTMVRRGELAH 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L +ER+W E + LE KNP I + + G + I +++ + Sbjct: 172 LVAERVWQEWQQSLEEKNPEQFIWTLRSCGALRVILPEIEAL 213 >gi|239631536|ref|ZP_04674567.1| CCA-adding enzyme [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526001|gb|EEQ65002.1| CCA-adding enzyme [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 325 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 83/331 (25%), Positives = 134/331 (40%), Gaps = 56/331 (16%) Query: 89 FDITTLRSDLITDGRYA------KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 +++TT R T+ RY V F R D RRDFTINAL G +ID GL Sbjct: 10 YEVTTFR----TESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHDGTIIDLFDGL 65 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL++ ++ +G+ H R ED LR++R RF + G I+ A K L +S Sbjct: 66 KDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAAIADNAKLLVHISV 124 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFK-EIFLDVQEISLDQLSQVIE---------- 251 ER+ +E N+LL + + +F + E +L Q SQ+ + Sbjct: 125 ERVAAEFNRLLTGIDRRAGLQDFIETRLFAYAPKMAAHETALTQFSQLPDTQLTSLASGW 184 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-----SLPREIRYFLISFFNCNFNQK 306 A +F + L +L +W+ ++++ + +P + L Sbjct: 185 AALIFLLRTQPL---AMLKAWKQSNELITLVTQTVKLLQVMPNPTAWDLYQAGEAAVTTA 241 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + E++KL D+ +A+ L IH KK L LT Sbjct: 242 S----EVQKLLTPDFDQQQLAEAYAALP---------------------IHSKKEL-ALT 275 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 G D++K G+ PG +G L +Q + + Sbjct: 276 GADLIKAGVRPGPAMGKALNQIEQRVVAGAL 306 >gi|68537183|ref|YP_251888.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium K411] gi|68264782|emb|CAI38270.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium K411] Length = 547 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 8/240 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D DL+ + +VGG+VRD+L+ D+D T P ++ I + V Sbjct: 62 DRDLLPLTQAFQDAGHSLYLVGGSVRDALLGRLSHDLDFTTDARPQAIVDIVTPLAETVW 121 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA--- 126 T I YGT+ + + + +ITT R+D DG R +V F D +RRDF NA Sbjct: 122 DTGIEYGTVSALVKGQILEITTFRADQY-DGQSRNPEVSFGDSLDGDLIRRDFRANAIAL 180 Query: 127 -LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 L D ++ D +GGL DL+ + +D LR+LR RF + E + Sbjct: 181 ELSPDGNHQLRDPLGGLEDLQAGVLDTPDSPEISFNDDPLRMLRACRFVSQL-EFGVTKR 239 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A + + ++ ER+ E+NKL+ P + M G+ + ++ + L Q Sbjct: 240 VKEAMAAMSEQISRITVERVAVELNKLMLGAAPWVGLDLMVETGLADHVLPELPALKLTQ 299 >gi|302879356|ref|YP_003847920.1| poly(A) polymerase [Gallionella capsiferriformans ES-2] gi|302582145|gb|ADL56156.1| poly(A) polymerase [Gallionella capsiferriformans ES-2] Length = 453 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 17/196 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGGAVRD L++ +D D+AT P+ V R+F ++R + + ++ ++ Sbjct: 54 KAFVVGGAVRDLLLDKIPKDFDVATDATPEEVKRVFRRSRI----IGRRFRLVHVMFGEE 109 Query: 88 YFDITTLR-----SDLITD--GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYV 139 ++ T R D TD GR + D + D+ RRDFT NAL+ D + I DY Sbjct: 110 LVEVATFRCMIDTEDAQTDAHGRLLRDNEFGDQEQDAARRDFTANALFYDPTTQEIYDYH 169 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGL 197 G D RN ++ IGD R ED +R+LR R A G I D + A+ A K L Sbjct: 170 QGYQDTRNGVLRIIGDPLVRYREDPVRMLRAVRLSAKLG---IALDPVTAAPIAQLKSLL 226 Query: 198 KILSSERIWSEINKLL 213 + R+ E+ K+L Sbjct: 227 DNVPEARMLDEVLKML 242 >gi|260579544|ref|ZP_05847415.1| polyA polymerase [Corynebacterium jeikeium ATCC 43734] gi|258602315|gb|EEW15621.1| polyA polymerase [Corynebacterium jeikeium ATCC 43734] Length = 541 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 8/240 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D DL+ + +VGG+VRD+L+ D+D T P ++ I + V Sbjct: 56 DRDLLPLTQAFQDAGHSLYLVGGSVRDALLGRLSHDLDFTTDARPQAIVDIVTPLAETVW 115 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA--- 126 T I YGT+ + + + +ITT R+D DG R +V F D +RRDF NA Sbjct: 116 DTGIEYGTVSALVKGQILEITTFRADQY-DGQSRNPEVSFGDSLDGDLIRRDFRANAIAL 174 Query: 127 -LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 L D ++ D +GGL DL+ + +D LR+LR RF + E + Sbjct: 175 ELSPDGNHQLRDPLGGLEDLQAGVLDTPDSPEISFNDDPLRMLRACRFVSQL-EFGVTKR 233 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A + + ++ ER+ E+NKL+ P + M G+ + ++ + L Q Sbjct: 234 VKEAMAAMSEQISRITVERVAVELNKLMLGAAPWVGLDLMVETGLADHVLPELPALKLTQ 293 >gi|147673822|ref|YP_001216090.1| polyA polymerase [Vibrio cholerae O395] gi|262169899|ref|ZP_06037589.1| poly(A) polymerase [Vibrio cholerae RC27] gi|146315705|gb|ABQ20244.1| polyA polymerase [Vibrio cholerae O395] gi|227012420|gb|ACP08630.1| polyA polymerase [Vibrio cholerae O395] gi|262021633|gb|EEY40344.1| poly(A) polymerase [Vibrio cholerae RC27] Length = 457 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 26/266 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++ + G + + + + L+ D Y + D+ Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNMYGTI------DEDAE 149 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 150 RRDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL 209 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F Sbjct: 210 -DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPT 268 Query: 238 VQE-ISLDQLSQVIEAEQVFEWKIDS 262 + E + D S+ EQ+ + +D+ Sbjct: 269 IAEHFTADHSSKT---EQMLDLVLDA 291 >gi|212715128|ref|ZP_03323256.1| hypothetical protein BIFCAT_00014 [Bifidobacterium catenulatum DSM 16992] gi|212661809|gb|EEB22384.1| hypothetical protein BIFCAT_00014 [Bifidobacterium catenulatum DSM 16992] Length = 480 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ D+D T+ P++ ++R F + + + +GT+ + R+ Sbjct: 31 ALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDM--GRKFGTLGAMRRR 88 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYV 139 + ++TT RSD D R +V + + D RRDFT+NA+ + + +D Sbjct: 89 EDGTEVQVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPELEFVDPF 148 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG NDL ++ D +D LR++R RF A G + I+ + A ++I Sbjct: 149 GGANDLVKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALTDMVDRIEI 207 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ K+L + P I + + G+ +F ++ + L ++ + + VFE Sbjct: 208 VSAERVRDELVKMLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRHKDVFEHT 266 Query: 260 IDSLLRFIVLISWQD 274 + + R + L + D Sbjct: 267 MIVIDRAVALETGPD 281 >gi|261820477|ref|YP_003258583.1| poly(A) polymerase I [Pectobacterium wasabiae WPP163] gi|261604490|gb|ACX86976.1| poly(A) polymerase [Pectobacterium wasabiae WPP163] Length = 482 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R + Sbjct: 59 NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRF 118 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-VFTRD-----WKADSLRRDF 122 ++ I++ + + D + ++ + A+ + RD + D+ RRDF Sbjct: 119 RLAHIMFGPEVIEVATFRGHHDQHQEQQEVKNSSQQAQSGMLLRDNIFGSVEEDAQRRDF 178 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 +IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A Sbjct: 179 SINSLYYSISDFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAA 232 >gi|30248100|ref|NP_840170.1| poly A polymerase family protein [Nitrosomonas europaea ATCC 19718] gi|30179985|emb|CAD83980.1| Poly A polymerase family [Nitrosomonas europaea ATCC 19718] Length = 460 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 32/221 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ L +D D+AT P+ V +F +R + + +I + + + Sbjct: 59 VVGGAVRDLLLGLKPKDYDVATNATPEEVRAVFRHSRI----IGRRFRLVHVISKGEIVE 114 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKA-------------------DSLRRDFTINALYADQ 131 ++T R + D +V T D +A D RRDFTINAL+ D Sbjct: 115 VSTFRGKMADD-----LVETEDVQANTDATGRLLHDNVFGSQEEDVRRRDFTINALFYDP 169 Query: 132 QG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +++DY+ G D+ + ++ IG+ R ED +R+LR R A G + ID D A Sbjct: 170 ATEEILDYLDGFEDVMAKRLRIIGEPEQRYREDPVRMLRAVRLSAKLGIQ-ID-DRTAAP 227 Query: 191 IKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 I L + + R++ E+ KLL + + L A++ + G+ Sbjct: 228 IGDLAPLLLNVPPARLFDEMLKLLFSGHALAAVIDLRARGL 268 >gi|212213205|ref|YP_002304141.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212] gi|212011615|gb|ACJ18996.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212] Length = 438 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 32/222 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R Sbjct: 40 PNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL---- 95 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--------------------LITDGRYAKVVFTRD 112 + + + + +++T R++ L D Y + Sbjct: 96 IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTI----- 150 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR Sbjct: 151 -EEDAWRRDFTVNALYYNITDFSVIDFTGGMRDLHQRLIRMIGDPTQRYHEDPVRLLRAI 209 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 R A K I D K L+ + S R+++E+ K+ Sbjct: 210 RLAAKLDFK-IHPDTEEPLKKLHNLLRHVPSARLFTEVLKIF 250 >gi|157372221|ref|YP_001480210.1| poly(A) polymerase I [Serratia proteamaculans 568] gi|157323985|gb|ABV43082.1| poly(A) polymerase [Serratia proteamaculans 568] Length = 505 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 16/239 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 + + +L LNK ++ +VGG VRD L+ +D DI T P++V ++F R Sbjct: 84 ENALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRLVGRR 143 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + T SD + + + RD + D+ RRDF Sbjct: 144 FRLAHVMFGPEIIEVATFRGHHEQQTPESDKNSSQQAQNGMLLRDNIFGSIEEDAQRRDF 203 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 TIN+LY AD + DYV GL DL+ I+ IGD R ED +R+LR RF A + Sbjct: 204 TINSLYYGVAD--FTLRDYVDGLRDLKQGVIRLIGDPETRYREDPVRMLRAVRFAAKL-D 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I + + L + R++ E KLL+A + + +F+ +F + Sbjct: 261 MTISDETAEPIPRLASLLHEIPPARLFEESLKLLQAGYGYPTYLKLCEYQLFQPLFPQI 319 >gi|317046958|ref|YP_004114606.1| poly(A) polymerase [Pantoea sp. At-9b] gi|316948575|gb|ADU68050.1| poly(A) polymerase [Pantoea sp. At-9b] Length = 478 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 16/236 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R Sbjct: 55 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPEQMRKLFRNCRLVGRR 114 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + D + R + RD + D+ RRD Sbjct: 115 FRLAHVMFGPEVIEVATFRGHHQMDEGEEDRNSSQRGQNGMLLRDNIFGSIEDDAQRRDL 174 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 TIN+LY AD V DYVGGL DL+ I+ IGD R ED +R+LR RF A E Sbjct: 175 TINSLYYSVAD--FTVRDYVGGLQDLQQGIIRLIGDPETRYREDPVRMLRVVRFAAKL-E 231 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E KLL+A M +F+ +F Sbjct: 232 MRIAPETAEPIPRLATLLHDIPPARLFEESLKLLQAGYGYRTYQMMREYQLFQPLF 287 >gi|29653638|ref|NP_819330.1| poly(A) polymerase [Coxiella burnetii RSA 493] gi|153208652|ref|ZP_01946904.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177'] gi|161829839|ref|YP_001596236.1| poly(A) polymerase [Coxiella burnetii RSA 331] gi|165919793|ref|ZP_02219536.1| poly(A) polymerase [Coxiella burnetii RSA 334] gi|212218121|ref|YP_002304908.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154] gi|29540900|gb|AAO89844.1| poly(A) polymerase [Coxiella burnetii RSA 493] gi|120575838|gb|EAX32462.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177'] gi|161761706|gb|ABX77348.1| poly(A) polymerase [Coxiella burnetii RSA 331] gi|165916876|gb|EDR35480.1| poly(A) polymerase [Coxiella burnetii RSA 334] gi|212012383|gb|ACJ19763.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154] Length = 439 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 32/222 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R Sbjct: 40 PNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL---- 95 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--------------------LITDGRYAKVVFTRD 112 + + + + +++T R++ L D Y + Sbjct: 96 IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTI----- 150 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR Sbjct: 151 -EEDAWRRDFTVNALYYNITDFSVIDFTGGMRDLHQRLIRMIGDPTQRYHEDPVRLLRAI 209 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 R A K I D K L+ + S R+++E+ K+ Sbjct: 210 RLAAKLDFK-IHPDTEEPLKKLHNLLRHVPSARLFTEVLKIF 250 >gi|254253161|ref|ZP_04946479.1| Poly(A) polymerase [Burkholderia dolosa AUO158] gi|124895770|gb|EAY69650.1| Poly(A) polymerase [Burkholderia dolosa AUO158] Length = 578 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 24/189 (12%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R+ Sbjct: 129 NAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRF 188 Query: 69 KVIPTSISYGTIKIIC-----------------RKKYFDITTLRSDLI-TDGRYAKVVFT 110 +++ I++ R+ D R+ + GR + Sbjct: 189 QIVHVQFGQELIEVSTFRALVDAPPAAADAEPPRRLKRDELDRRTHAVDASGRVLRDNVW 248 Query: 111 RDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 249 GEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLR 308 Query: 170 FFRFFAHYG 178 RF A G Sbjct: 309 VVRFAAKLG 317 >gi|324115361|gb|EGC09325.1| poly A polymerase head domain-containing protein [Escherichia fergusonii B253] gi|325498613|gb|EGC96472.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia fergusonii ECD227] Length = 412 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 153/354 (43%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ LSV+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDDGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP +++ G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETESALTTRNPQVFFQVLHDCGALRVLFPEI-----DALFGV-PAPARWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEIRDLAKLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|297569506|ref|YP_003690850.1| polynucleotide adenylyltransferase [Desulfurivibrio alkaliphilus AHT2] gi|296925421|gb|ADH86231.1| Polynucleotide adenylyltransferase [Desulfurivibrio alkaliphilus AHT2] Length = 466 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 25/244 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 D + + ++ L ++ +VGG VRD L+ +D DI+T P ++ +IF +R Sbjct: 38 DREALKVMHRLRDEGFRAYLVGGGVRDLLLGKKPKDFDISTDARPGQLRKIFRNSRIIGR 97 Query: 68 -YKVIPTSISYGTIKII----CRKKY----FDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++++ G I + CR ++ +I TL SD T G D D+ Sbjct: 98 RFRLVQVFFHGGKIIEVATFRCRSEFDLNGGEIETLASD-NTFG---------DPAEDAF 147 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRD TINAL+ + + VIDY GG+ DLR ++ +GD R++ D +R+LR R A Sbjct: 148 RRDLTINALFYEIENFSVIDYTGGVEDLRLGLVRLVGDPDRRLIRDPVRMLRAIRHAARS 207 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G I+ + A ++ + L++ R+ E+ K L+A G+F E+F Sbjct: 208 G-FVIEEETWQAILRHVEKLRLCPDSRLRDELCKDLQAGASRRWAELGLASGVFFELFPF 266 Query: 238 VQEI 241 +EI Sbjct: 267 YREI 270 >gi|323491995|ref|ZP_08097160.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546] gi|323313724|gb|EGA66823.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546] Length = 455 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 122/266 (45%), Gaps = 30/266 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L+ ++ +VGG VRD L++ +D DIAT P+++ ++F R Sbjct: 39 NALKVLYRLHGAGFEAYLVGGGVRDLLLSQQPKDFDIATNATPEQIRQLFKNCRL----I 94 Query: 74 SISYGTIKIICRKKYFDITTLRSD----------------LITDGRYAKVVFTRDWKADS 117 + I+ + ++ T R L+ D Y + D+ Sbjct: 95 GRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKEGMLLRDNVYGTI------DEDA 148 Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NA+Y + I DY GG+ DL ++ I+ IGD R ED +R+LR RF Sbjct: 149 ERRDFTVNAMYYNIGDYSIHDYAGGIEDLEDKLIRLIGDPDTRYREDPVRMLRAIRFAVK 208 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +I+ D + L+ + + R++ E K+L++ + L M +F+++F Sbjct: 209 L-DFDIEEDTAAPIEELATLLQEIPAARLYEESLKMLQSGHGLETYHLMREYNLFQQLFP 267 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDS 262 + E + S EQ+ + +DS Sbjct: 268 TIAEFFTEDYSSP--TEQMLDLVLDS 291 >gi|121997474|ref|YP_001002261.1| poly(A) polymerase [Halorhodospira halophila SL1] gi|121588879|gb|ABM61459.1| poly(A) polymerase [Halorhodospira halophila SL1] Length = 411 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 21/240 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPTSISYGTIKIICR 85 +VGG VRD + +D D+AT P+ V ++F R +++ I++ Sbjct: 1 MVGGGVRDLSLGREPKDFDVATDARPEEVRKLFRNCRLIGRRFRLAHVHFGAEIIEVATF 60 Query: 86 KKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDY 138 + D +I +GR + D+LRRDFT+NALY + V+D+ Sbjct: 61 RALHPPEDSEGDDADGERVIENGRIVRDNVYGTLAEDALRRDFTVNALYYNIDDFSVVDH 120 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG++DL + I+ IGD H R ED +R+LR RF G + I + Sbjct: 121 AGGMDDLEDGIIRLIGDPHERYQEDPVRMLRAVRFALKLGFR-IHPQTAAPMHDMADSVA 179 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 + R++ E KL + + L+A + + G+F+ + L ++ +E E +W Sbjct: 180 DMPPARLFDEALKLFMSGDALDAFEMLRHYGLFESL--------LPLTAEALEEEGSEQW 231 >gi|281356198|ref|ZP_06242691.1| poly(A) polymerase [Victivallis vadensis ATCC BAA-548] gi|281317567|gb|EFB01588.1| poly(A) polymerase [Victivallis vadensis ATCC BAA-548] Length = 412 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 102/189 (53%), Gaps = 18/189 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 ++H+ + +I+++S L ++ IVGGA+RD L+ + +D DI+T+ P+ V +F Sbjct: 1 MKHELPVANHVISLISELQNAGFEAYIVGGAIRDLLLGRTPKDYDISTSATPEEVRGVFG 60 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR-----SDLITDGRYAK-----VVFTRD-- 112 + ++I + + + + F+++T R L DGR AK ++ + + Sbjct: 61 RRIARII--GKRFRLVHVQYGGELFEVSTFRKAPTQGQLRPDGRPAKDLPEHMILSDNEF 118 Query: 113 --WKADSLRRDFTINALYADQ-QGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFT+NAL+ D + ++IDY G G+ D+R ++ IG+ R ED +R+L Sbjct: 119 GSAEEDAWRRDFTVNALFYDPVRSELIDYTGQGIGDIRAGIVRAIGNPKLRFEEDPVRML 178 Query: 169 RFFRFFAHY 177 R + Y Sbjct: 179 RALKLVGQY 187 >gi|118580041|ref|YP_901291.1| poly(A) polymerase [Pelobacter propionicus DSM 2379] gi|118502751|gb|ABK99233.1| poly(A) polymerase [Pelobacter propionicus DSM 2379] Length = 455 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 29/231 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD L+ +D D+ T P++V RIF R + I + + + Sbjct: 43 LVGGCVRDLLLGREPKDFDVVTNATPNQVKRIFRNCRL----VGRRFRLAHIHFQDEIIE 98 Query: 91 ITTLRSDLI------------TDGRYAKVVFTRDW-----------KADSLRRDFTINAL 127 + T RS T+ R+ +++ D + D+LRRDFT+N+L Sbjct: 99 VATFRSPASDEPDPAPKKPDETEQRHPRMLKDDDGMILRDNVYGTPEEDALRRDFTVNSL 158 Query: 128 -YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y +ID+ GGL DL I+ IGD R ED +R+LR RF A G I+ Sbjct: 159 AYNIADFSIIDFTGGLADLSAGIIRTIGDPAVRFQEDPVRMLRAVRFAAQLG-FTIEEQT 217 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 A + A + + R++ E+ KL + H+ G+F +F D Sbjct: 218 RKALVAATDTIVRSAPPRLYEEVLKLFLSGEGAKCYDHLSRTGLFAALFPD 268 >gi|296161792|ref|ZP_06844594.1| poly(A) polymerase [Burkholderia sp. Ch1-1] gi|295887956|gb|EFG67772.1| poly(A) polymerase [Burkholderia sp. Ch1-1] Length = 529 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 84 IRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARIIGRRFQI 143 Query: 68 ------YKVIPTSISYGTIKIIC------RKKYFDITTLRSDLI-TDGRYAKVVFTRDWK 114 ++I TS + R+ D R+ + GR + + Sbjct: 144 VHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASGRVLRDNVWGEQH 203 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 204 EDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYREDPVRMLRVVRF 263 Query: 174 FA 175 A Sbjct: 264 AA 265 >gi|296101313|ref|YP_003611459.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055772|gb|ADF60510.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 447 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 22/241 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R Sbjct: 28 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRL---- 83 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 84 VGRRFRLAHVMFGPEIIEVATFRGHHEAGASDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 143 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DFTIN+LY AD V DYVGG+ DL+ I+ IG R ED +R+LR RF A Sbjct: 144 DFTINSLYYSVAD--FTVRDYVGGMQDLKEGLIRLIGTPETRYREDPVRMLRAVRFAAKL 201 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I + + + + R++ E KLL+A + + +F+ +F Sbjct: 202 -DMRISPETAEPIPRLATLINDVPPARLFEEALKLLQAGHGFATYNLLREYNLFQPLFPS 260 Query: 238 V 238 + Sbjct: 261 I 261 >gi|311278031|ref|YP_003940262.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Enterobacter cloacae SCF1] gi|308747226|gb|ADO46978.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Enterobacter cloacae SCF1] Length = 412 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 18/222 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P +++ + + P + + + Sbjct: 2 KRFLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPDS-----HE 56 Query: 87 KYFDITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R S YA T + D LRRD T+NAL D G VID GG Sbjct: 57 EYALARTERKSGSGYTGFTCYAAPDVT--LEQDLLRRDLTVNALAQDDDGTVIDPYGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + A L Sbjct: 115 DLQNRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETMTLMRDMTAAGELAH 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L+ ER+W E L +NP + + G K +F +V + Sbjct: 172 LTPERVWKETESALTTRNPQVYFQTLRDCGALKVLFPEVDAL 213 >gi|170768603|ref|ZP_02903056.1| poly(A) polymerase [Escherichia albertii TW07627] gi|170122707|gb|EDS91638.1| poly(A) polymerase [Escherichia albertii TW07627] Length = 454 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 17/176 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 DFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAA 206 >gi|238898700|ref|YP_002924381.1| poly(A) polymerase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466459|gb|ACQ68233.1| poly(A) polymerase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 439 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 16/236 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V +F R Sbjct: 18 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRELFRNCRLIGRR 77 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ TI++ + + + + + + R + RD + D+ RRDF Sbjct: 78 FRLAHIMFGTDTIEVATFRGHHGLKSANQNTHSSQRAQNGMLLRDNIFGSIEEDAHRRDF 137 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 T+N+LY AD + DY GGL D++ I+ IGD R ED +R+LR RF A + Sbjct: 138 TVNSLYYGIAD--FTLRDYTGGLKDIKQGLIRLIGDPEIRYPEDPVRMLRAVRFSAKL-D 194 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I S+ + LK + R++ E KLL++ + + + +F +F Sbjct: 195 MAISSETGKPIPRFAFLLKEVPGARLFEESLKLLQSGHGYKTYLKLCEYQLFPLLF 250 >gi|330891188|gb|EGH23849.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. mori str. 301020] Length = 409 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 22/220 (10%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGAVRD L+ V DID + T D +++ Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGTSTEDMLVK-----GYRPVGTDFPV-FLHPLTNEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 60 LARTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L+ Sbjct: 117 EARILRHVSPA---FAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +ER W EI++ L + P I +++ G KE+ +V+ + Sbjct: 174 AERSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|187922750|ref|YP_001894392.1| poly(A) polymerase [Burkholderia phytofirmans PsJN] gi|187713944|gb|ACD15168.1| poly(A) polymerase [Burkholderia phytofirmans PsJN] Length = 529 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 84 IRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARIIGRRFQI 143 Query: 68 ------YKVIPTSISYGTIKIIC------RKKYFDITTLRSDLI-TDGRYAKVVFTRDWK 114 ++I TS + R+ D R+ + GR + + Sbjct: 144 VHVQFGQEIIETSTFRALVDPPAADAPPARRLKRDELDRRTHAVDASGRVLRDNVWGEQH 203 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 204 EDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYREDPVRMLRVVRF 263 Query: 174 FA 175 A Sbjct: 264 AA 265 >gi|111020630|ref|YP_703602.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1] gi|110820160|gb|ABG95444.1| probable tRNA nucleotidyltransferase [Rhodococcus jostii RHA1] Length = 483 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 12/222 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P+RV ++ S T I +GTI + + Sbjct: 45 LVGGSVRDAILGRLGTDLDFTTDAHPERVQKLLSGWADNQWDTGIEFGTISAAKAGQQIE 104 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R V F + D +RRDFT+NA+ AD +D +GG+N L Sbjct: 105 ITTYRADAYDRVSRNPVVQFGTKLEDDLVRRDFTVNAMAVRIGADGSQDFVDPLGGMNAL 164 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILSS 202 + + +D LR+LR RF + G + + A + ++ +++ Sbjct: 165 LAGVLDTPSAPENSFNDDPLRMLRAARFVSQLGFTLHERVHQ----AIVDMAPQIERITA 220 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 ER+ +E++KL+ + P++ + M G+ + +V ++ L+ Sbjct: 221 ERVRAELDKLILGEFPIDGMNVMCETGLADFVLPEVPQMKLE 262 >gi|225076461|ref|ZP_03719660.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens NRL30031/H210] gi|224952140|gb|EEG33349.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens NRL30031/H210] Length = 450 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 101/193 (52%), Gaps = 14/193 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTSISYGTIKI 82 ++ +VGGAVRD L+ + +D DIAT P+++ ++F ++ R++++ I TI++ Sbjct: 53 QAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKVFRRSRIIGRRFQIVHVMIGPETIEV 112 Query: 83 ICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVG 140 + + + ++ D Y + + D++RRDFT NALY D + ++ D+ Sbjct: 113 TTFRGGNKVQQNAQGRIMKDNTYGSI------EEDAMRRDFTCNALYYDPIKEEIWDFHQ 166 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G+ D+ ++ + IGD R ED +RILR R G K + L + A + LK Sbjct: 167 GVADVADKKLVMIGDPAERYQEDPVRILRAVRLSGKLGFKVEEQTALPIAEYAGR-LKNE 225 Query: 201 SSERIWSEINKLL 213 R++ EI K+L Sbjct: 226 PVARLFDEILKIL 238 >gi|330470813|ref|YP_004408556.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Verrucosispora maris AB-18-032] gi|328813784|gb|AEB47956.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Verrucosispora maris AB-18-032] Length = 486 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 14/314 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ +D+D T PD+ + I + T +GTI + Sbjct: 49 LVGGSVRDALLGRLGEDLDFCTDAHPDQTLGIVRGWAEAIWETGREFGTIGCQRDGLRLE 108 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 ITT R++ R V + + D RRDFTINA+ + D GGL DL + Sbjct: 109 ITTFRAESYDQVSRNPVVEYGTNLTEDLRRRDFTINAMAVSLPDHRFTDPYGGLADLAAK 168 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ G +D LR+LR RF A + D A + L +++ERI E Sbjct: 169 VVRTPGTPAESFGDDPLRMLRAARFAAQL-RFAVHPDVYAAMTRMAADLDRITAERIRDE 227 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 KLL A +P+ + + + G+ + ++ + L ++ + + + V+E + +++R + Sbjct: 228 FTKLLCAADPITGLRLLVDTGLAERFLPELTGLKL-EIDEHAQHKDVYEHTL-TVVRNAI 285 Query: 269 LISWQDKKSILSMAK------KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 IL MA K + +SF + L+ +K L Y Sbjct: 286 SYEQDGPDFILRMAALMHDVGKPATKAVGSDGRVSFHHHEVVGARLTKARMKALRY---P 342 Query: 323 KVMIAKLKIFLALH 336 K + AK+ +ALH Sbjct: 343 KDITAKVTALVALH 356 >gi|163751935|ref|ZP_02159147.1| putative tRNA nucleotidyltransferase [Shewanella benthica KT99] gi|161328151|gb|EDP99317.1| putative tRNA nucleotidyltransferase [Shewanella benthica KT99] Length = 413 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 111/219 (50%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV---IPTSISYGTIKIICRKK 87 +VGGAVRDSL+ L V+D D ++ ++ +K ++V P + T +++ Sbjct: 5 LVGGAVRDSLLKLPVKDRDY--LVVGATQEQMLAKGFHRVGKDFPVFLHPET-----QQE 57 Query: 88 YFDITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 Y T R G ++ + D LRRD T+NA+ D GK+ D GG++DL Sbjct: 58 YALARTERKTGSGYGGFSCHASPDVTLEQDLLRRDLTVNAIAQDDDGKLYDPYGGVDDLN 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+ ++ + DA +ED LR+LR RF A + + ++ ++A+I L+ L++ Sbjct: 118 NKLLRHVSDA---FIEDPLRVLRVARFAARFHAQGFTIADETLTMMANISQSGELEALTA 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER++ E++K L NP I + G K +F ++ + Sbjct: 175 ERVFQELDKALSTDNPHIFIDVLEQCGALKILFPEIHAL 213 >gi|312881707|ref|ZP_07741484.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370597|gb|EFP98072.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio caribbenthicus ATCC BAA-2122] Length = 405 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 104/232 (44%), Gaps = 23/232 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+N+ V D D + P ++ K P I T +++Y Sbjct: 5 LVGGAVRDTLLNIKVSDQDWVVVGSSPQELLAAGYLPVGKDFPVFIHPKT-----KQEYA 59 Query: 90 DITTLRSDLITDGRYAKVVF---TRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R I+ G F + + D RRD TINA+ G++ID G DL+ Sbjct: 60 LARTERK--ISSGHTGFECFFSPSVTLEEDLSRRDLTINAMAQHLDGEIIDPFKGRRDLK 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFA---HYGEKNIDSDGLVASIKAKKG-LKILSS 202 +R ++ + DA +ED LRILR RF A H G L+ K G LK L+ Sbjct: 118 DRQLRHVSDA---FIEDPLRILRVARFHAKLFHLGFNIAPETLLLMKNMVKAGDLKTLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 ERIW E NK L NP + + G I + LD L V + EQ Sbjct: 175 ERIWQEWNKSLATPNPQIFLSTLKECGALAVILPE-----LDALFGVPQPEQ 221 >gi|153819896|ref|ZP_01972563.1| polyA polymerase [Vibrio cholerae NCTC 8457] gi|126509566|gb|EAZ72160.1| polyA polymerase [Vibrio cholerae NCTC 8457] Length = 457 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 26/266 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++ + G + + + + L+ D Y + D+ Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTI------DEDAE 149 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 150 RRDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL 209 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F Sbjct: 210 -DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAAHGLETYHLMRQYNLFQQLFPT 268 Query: 238 VQE-ISLDQLSQVIEAEQVFEWKIDS 262 + E + D S+ EQ+ + +D+ Sbjct: 269 IAEHFTADHSSKT---EQMLDLVLDA 291 >gi|154707640|ref|YP_001425127.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111] gi|154356926|gb|ABS78388.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111] Length = 439 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 32/222 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R Sbjct: 40 PNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL---- 95 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--------------------LITDGRYAKVVFTRD 112 + + + + +++T R++ L D Y + Sbjct: 96 IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTI----- 150 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR Sbjct: 151 -EEDARRRDFTVNALYYNITDFSVIDFTGGMRDLHRRLIRMIGDPTQRYHEDPVRLLRAI 209 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 R A K I D K L+ + S R+++E+ K+ Sbjct: 210 RLAAKLDFK-IHPDTEEPLKKLHNLLRHVPSARLFTEVLKIF 250 >gi|319786655|ref|YP_004146130.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1] gi|317465167|gb|ADV26899.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1] Length = 478 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 13/175 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L + + +VGGAVRD L+ + +D D+AT P++V ++F R Sbjct: 62 PNALRVLYRLREAGFGAYLVGGAVRDLLLGMHPKDFDVATDATPEQVKQLFRNCRL---- 117 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTI 124 + ++ ++ ++ T R+++ + DGR + + D++RRDFT Sbjct: 118 IGRRFRLAHVVYGREIIEVATFRANVDDGSGDREVEDGRLVRDNVYGTIEDDAVRRDFTC 177 Query: 125 NAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NAL YA + V DY GG D+ R ++ IGD R ED +R+LR R A G Sbjct: 178 NALYYAIEDFSVRDYTGGYEDVLARKMRLIGDPETRYREDPVRMLRAVRLAAKLG 232 >gi|284008583|emb|CBA75158.1| multifunctional Cca protein [includes [Arsenophonus nasoniae] Length = 412 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V D D + P+ ++++ + K P + T R++Y Sbjct: 5 LVGGAVRDQLLGLPVSDRDWVVVGATPEDLIKLGFQQVGKDFPVFLHPKT-----REEYA 59 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R + G + D LRRD TINA+ + G++ID G D++NR Sbjct: 60 LARTERKTGVGYTGFSCYAAPDVTIEEDLLRRDLTINAIAQTEDGQLIDPFHGEQDIKNR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + A ED LRILR RF A ++ ++ L+ + + L +S+ER Sbjct: 120 LLRHVSAA---FAEDPLRILRVARFAARLAKQKFTIANETQSLMEKMIFNQELSTISAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +WSE K L++ P +++ G +F ++ ++ Sbjct: 177 VWSETEKALQSSAPETYFHVLHDCGALAILFPEINQL 213 >gi|238021942|ref|ZP_04602368.1| hypothetical protein GCWU000324_01847 [Kingella oralis ATCC 51147] gi|237866556|gb|EEP67598.1| hypothetical protein GCWU000324_01847 [Kingella oralis ATCC 51147] Length = 411 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 17/214 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D + D ++R + K P + T R++Y Sbjct: 5 LVGGAVRDQLLGLPVKDRDWVVVGADADELLRQGYQPVGKDFPVFLHPET-----REEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T YA F D + D LRRD TINA+ D G +ID GG +DL Sbjct: 59 --ALARTERKTAKGYAGFAFYADKSITLEQDLLRRDLTINAMAQDVSGCLIDPFGGQSDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 +++ ++ + A ED +RILR RF A YG ++ L+ + A L +ER Sbjct: 117 QHKILRHVSPA---FAEDPVRILRTARFAARYGFAVAPETMQLMRDMVAAGEADALVAER 173 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E+ K L NP I + + G + +V Sbjct: 174 VWQELAKGLMEANPRRMIEILRDCGALAILLPEV 207 >gi|297193312|ref|ZP_06910710.1| RNA nucleotidyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197718371|gb|EDY62279.1| RNA nucleotidyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 488 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 19/229 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ D+D T P+ V++I V I++GT+ + Sbjct: 45 ALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWDVGIAFGTVGAHKAGRVG 104 Query: 90 D--------ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYV 139 D +TT RS+ R +V + + D +RRDFT+NA+ K ID Sbjct: 105 DAVQSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEQDLVRRDFTVNAMAVALPAKEFIDPH 164 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKA-KK 195 GL+DL + ++ G +D LR++R RF A +D + +VA++KA + Sbjct: 165 DGLSDLAAKVLRTPGTPEESFSDDPLRMMRAARFAAQ-----LDFEVAPEVVAAMKAMAE 219 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 ++I+S+ER+ E NKLL + +P + + + G+ + ++ + L+ Sbjct: 220 RIEIVSAERVRDEFNKLLLSAHPRKGLSLLVDTGLAAHVLPELPALRLE 268 >gi|91781890|ref|YP_557096.1| Poly(A) polymerase [Burkholderia xenovorans LB400] gi|91685844|gb|ABE29044.1| Poly(A) polymerase [Burkholderia xenovorans LB400] Length = 529 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 84 IRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARIIGRRFQI 143 Query: 68 ------YKVIPTSISYGTIKIIC------RKKYFDITTLRSDLI-TDGRYAKVVFTRDWK 114 ++I TS + R+ D R+ + GR + + Sbjct: 144 VHVQFGQEIIETSTFRALVDPPAADAPPARRLKRDELDRRTHAVDASGRVLRDNVWGEQH 203 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 204 EDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYREDPVRMLRVVRF 263 Query: 174 FA 175 A Sbjct: 264 AA 265 >gi|148979543|ref|ZP_01815574.1| polyA polymerase [Vibrionales bacterium SWAT-3] gi|145961727|gb|EDK27023.1| polyA polymerase [Vibrionales bacterium SWAT-3] Length = 451 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 28/244 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LN + +VGG VRD L+ +D DIAT P+++ +F R Sbjct: 37 NALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFRNCRL----I 92 Query: 74 SISYGTIKIICRKKYFDITTLRSD----------------LITDGRYAKVVFTRDWKADS 117 + I+ + ++ T R L+ D Y V D+ Sbjct: 93 GRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSKEGMLLRDNVYGSV------DEDA 146 Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF A Sbjct: 147 ERRDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRFSAK 206 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +I+ D LK + + R++ E KLL++ L M +F+++F Sbjct: 207 L-DFDIEEDTADPIEGLAHLLKDIPAARLYEESLKLLQSGYGLETYHLMREYNLFQQMFP 265 Query: 237 DVQE 240 V E Sbjct: 266 AVAE 269 >gi|197284108|ref|YP_002149980.1| poly(A) polymerase I [Proteus mirabilis HI4320] gi|194681595|emb|CAR40583.1| poly(A) polymerase [Proteus mirabilis HI4320] Length = 446 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 19/215 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F +R Sbjct: 19 NALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFRNSRL----V 74 Query: 74 SISYGTIKIICRKKYFDITTLR--------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + I+ + ++ T R SD + + RD + D++RR Sbjct: 75 GRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFGSIEEDAIRR 134 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N+LY V DYVGGL DL++ TI+ IG R ED +R+LR R FA + Sbjct: 135 DFTLNSLYYGVDDFAVRDYVGGLADLKSGTIRLIGSPETRYREDPVRMLRAIR-FASKLD 193 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 I + + L+ + S R++ E KLL+ Sbjct: 194 MRIAPETAEPISQLAPLLRNIPSARLFEESLKLLQ 228 >gi|229512859|ref|ZP_04402326.1| poly(A) polymerase [Vibrio cholerae TMA 21] gi|229520886|ref|ZP_04410308.1| poly(A) polymerase [Vibrio cholerae TM 11079-80] gi|229525250|ref|ZP_04414655.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426] gi|229530403|ref|ZP_04419791.1| poly(A) polymerase [Vibrio cholerae 12129(1)] gi|254226863|ref|ZP_04920433.1| polyA polymerase [Vibrio cholerae V51] gi|254291266|ref|ZP_04962061.1| polyA polymerase [Vibrio cholerae AM-19226] gi|262190661|ref|ZP_06048894.1| poly(A) polymerase [Vibrio cholerae CT 5369-93] gi|297580723|ref|ZP_06942649.1| polyA polymerase [Vibrio cholerae RC385] gi|125620614|gb|EAZ48978.1| polyA polymerase [Vibrio cholerae V51] gi|150422830|gb|EDN14782.1| polyA polymerase [Vibrio cholerae AM-19226] gi|229332176|gb|EEN97664.1| poly(A) polymerase [Vibrio cholerae 12129(1)] gi|229338831|gb|EEO03848.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426] gi|229342119|gb|EEO07115.1| poly(A) polymerase [Vibrio cholerae TM 11079-80] gi|229350108|gb|EEO15061.1| poly(A) polymerase [Vibrio cholerae TMA 21] gi|262033445|gb|EEY51950.1| poly(A) polymerase [Vibrio cholerae CT 5369-93] gi|297535139|gb|EFH73974.1| polyA polymerase [Vibrio cholerae RC385] Length = 457 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 30/268 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++ + G + + + + L+ D Y + D+ Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTI------DEDAE 149 Query: 119 RRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDFTINA+Y AD + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 150 RRDFTINAMYYNIADY--SIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAV 207 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F Sbjct: 208 KL-DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLF 266 Query: 236 LDVQE-ISLDQLSQVIEAEQVFEWKIDS 262 + E + D S+ EQ+ + +D+ Sbjct: 267 PTIAEHFTADHSSKT---EQMLDLVLDA 291 >gi|153803792|ref|ZP_01958378.1| polyA polymerase [Vibrio cholerae MZO-3] gi|124120672|gb|EAY39415.1| polyA polymerase [Vibrio cholerae MZO-3] Length = 351 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 124/257 (48%), Gaps = 14/257 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R +++ Sbjct: 39 LKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRL 98 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFTINAL 127 +++ + + ++ ++ ++ + D+ RRDFTINA+ Sbjct: 99 AHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAM 158 Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF + +I+ D Sbjct: 159 YYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFDIEEDT 217 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQ 245 + L+ + + R++ E K+L+A + L M +F+++F + E + D Sbjct: 218 AAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEHFTSDH 277 Query: 246 LSQVIEAEQVFEWKIDS 262 S+ EQ+ + +D+ Sbjct: 278 SSKT---EQMLDLVLDA 291 >gi|262204638|ref|YP_003275846.1| tRNA adenylyltransferase [Gordonia bronchialis DSM 43247] gi|262087985|gb|ACY23953.1| tRNA adenylyltransferase [Gordonia bronchialis DSM 43247] Length = 489 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 6/218 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P++++ + + I +GT+ + + + Sbjct: 51 LVGGSVRDAILGRLGNDLDFTTDARPEQILELVGGWADAIWDVGIEFGTVGVRKGEAMIE 110 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D GR +V F D +RRDFTINA+ AD ++D + G+ L Sbjct: 111 ITTFRADAYDRVGRNPEVTFGDTLDGDLVRRDFTINAMAVRVDADGAQDLLDPLDGVTAL 170 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 I +D LR+LR RF + G + + A + ++ +++ER+ Sbjct: 171 LAGVIDTPAAPEDSFGDDPLRMLRAVRFISQLGFR-LAPRVADAITRMADQIERITAERV 229 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 E++KL+ + P++AI M G+ + + +V + L Sbjct: 230 RMELDKLICGEYPIDAIDAMVETGLAQHVLPEVPGMKL 267 >gi|327483400|gb|AEA77807.1| Poly(A) polymerase [Vibrio cholerae LMA3894-4] Length = 457 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 26/266 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++ + G + + + + L+ D Y + D+ Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTI------DEDAE 149 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 150 RRDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL 209 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F Sbjct: 210 -DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPT 268 Query: 238 VQE-ISLDQLSQVIEAEQVFEWKIDS 262 + E + D S+ EQ+ + +D+ Sbjct: 269 IAEHFTADHSSKT---EQMLDLVLDA 291 >gi|289667258|ref|ZP_06488333.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 455 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 16/232 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R Sbjct: 41 NALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRNCRL----I 96 Query: 74 SISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++ ++ ++ T R++ + +GR + + D++RRDFT N Sbjct: 97 GRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFTCN 156 Query: 126 ALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY A + V DY GG D++ R +K IGDA R ED +R+LR R A + I++ Sbjct: 157 ALYYAIEDFSVRDYCGGFEDVQARLMKLIGDAELRYQEDPVRMLRAVRLAAKL-DFEIEA 215 Query: 185 DGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I G L + R++ EI KL + + +++ + G+F +F Sbjct: 216 -GTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVSSFEGLERYGLFGALF 266 >gi|119718898|ref|YP_925863.1| HDIG domain-containing protein [Nocardioides sp. JS614] gi|119539559|gb|ABL84176.1| HDIG domain protein [Nocardioides sp. JS614] Length = 483 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 7/220 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+++ D+D T+ P++ + V ++GTI CRK + Sbjct: 44 ALVGGPVRDAMLGRQHNDLDFTTSARPEQTEALLKGWADAVWDMGRAFGTIG--CRKGEW 101 Query: 90 --DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDL 145 +ITT RS+ D R V F D RRDFT+NA+ G+ + D GG+ DL Sbjct: 102 QVEITTYRSEAYDPDSRKPTVDFGDTLAGDLGRRDFTVNAMAVRVPGRELEDPYGGVVDL 161 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R ++ G +D LR++R RF A G +D + A ++I+S+ER+ Sbjct: 162 AERVLRTPGRPEDSFSDDPLRMMRAARFAAQLG-FGVDPAVVAAMTAMAGRIEIISAERV 220 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 E+ KL+ A P + + + G+ + ++ ++L++ Sbjct: 221 RDELVKLVCAPYPRLGLRLLVDTGLAALVLPELPALALER 260 >gi|15640615|ref|NP_230244.1| polyA polymerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121730139|ref|ZP_01682536.1| polyA polymerase [Vibrio cholerae V52] gi|227080777|ref|YP_002809328.1| polyA polymerase [Vibrio cholerae M66-2] gi|229509186|ref|ZP_04398671.1| poly(A) polymerase [Vibrio cholerae B33] gi|229519604|ref|ZP_04409047.1| poly(A) polymerase [Vibrio cholerae RC9] gi|229608891|ref|YP_002879539.1| poly(A) polymerase [Vibrio cholerae MJ-1236] gi|254850828|ref|ZP_05240178.1| polyA polymerase [Vibrio cholerae MO10] gi|255744185|ref|ZP_05418138.1| poly(A) polymerase [Vibrio cholera CIRS 101] gi|262155757|ref|ZP_06028881.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1] gi|298500714|ref|ZP_07010517.1| polyA polymerase [Vibrio cholerae MAK 757] gi|9655025|gb|AAF93761.1| polyA polymerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628115|gb|EAX60652.1| polyA polymerase [Vibrio cholerae V52] gi|227008665|gb|ACP04877.1| polyA polymerase [Vibrio cholerae M66-2] gi|229344293|gb|EEO09268.1| poly(A) polymerase [Vibrio cholerae RC9] gi|229353758|gb|EEO18694.1| poly(A) polymerase [Vibrio cholerae B33] gi|229371546|gb|ACQ61969.1| poly(A) polymerase [Vibrio cholerae MJ-1236] gi|254846533|gb|EET24947.1| polyA polymerase [Vibrio cholerae MO10] gi|255738125|gb|EET93517.1| poly(A) polymerase [Vibrio cholera CIRS 101] gi|262030468|gb|EEY49108.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1] gi|297540495|gb|EFH76553.1| polyA polymerase [Vibrio cholerae MAK 757] Length = 457 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 26/266 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++ + G + + + + L+ D Y + D+ Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTI------DEDAE 149 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 150 RRDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL 209 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F Sbjct: 210 -DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPT 268 Query: 238 VQE-ISLDQLSQVIEAEQVFEWKIDS 262 + E + D S+ EQ+ + +D+ Sbjct: 269 IAEHFTADHSSKT---EQMLDLVLDA 291 >gi|328955695|ref|YP_004373028.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Coriobacterium glomerans PW2] gi|328456019|gb|AEB07213.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Coriobacterium glomerans PW2] Length = 492 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 5/211 (2%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L L + + K+ VGG VRD+L+ DIDI + +V+ T +S Sbjct: 32 TVLRALEETDLKAWFVGGWVRDALLGSESHDIDICCSGSWQSNAAALRAAGIEVLETGVS 91 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +G I + ++T+ R D DGR+ ++ + D RRD T+NA+ + Sbjct: 92 FGGITAVIAHDRVEVTSYRIDGDYVDGRHPVRIERAGSIEDDLARRDLTVNAMAWHPERG 151 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKA 193 +ID G DL R I+ +G A R ED LR+LR RF K + ++D + + Sbjct: 152 LIDLFDGRGDLARRVIRAVGIARERFEEDALRMLRAVRFACSLDFKMDFETDEAIRACAP 211 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 LK +S++R+ SE++++L + +A+ H Sbjct: 212 L--LKAISAQRVGSELDRILASGRGGDALAH 240 >gi|254823068|ref|ZP_05228069.1| PcnA [Mycobacterium intracellulare ATCC 13950] Length = 480 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 8/225 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P++V I + + T I +GT+ + + Sbjct: 41 LVGGSVRDALLGRLSPDLDFTTDARPEQVQNILRRWADNLWDTGIQFGTVGVGKGDHRLE 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R V + + D +RRDFT NA+ + G+ +D +GGL L Sbjct: 101 ITTFRADTYDQVSRNPDVQYGDRLEDDLVRRDFTANAMAVRITPEGPGEFLDPLGGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R R + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 161 RERVLDTPAAPEVSFGDDPLRMLRAARFVSQLG-FTVAPRVRAAIEQMASQLGRISAERV 219 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 +E++KL+ +P I + G+ + + ++ ++++D+ Q Sbjct: 220 AAELDKLVLGDDPTAGIDLLVQTGMGEVVLPEIGGMQMAIDEHHQ 264 >gi|218547599|ref|YP_002381390.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469] gi|218355140|emb|CAQ87747.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469] Length = 472 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 53 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 168 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 169 DFTINSLYYSVADFTVRDYVGGMQDLKEGIIRLIGNPETRYREDPVRMLRAVRFAAKLNM 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 229 Q-ISPETAEPIPRLAALLNDVPPARLFEESLKLLQA 263 >gi|213966257|ref|ZP_03394441.1| tRNA adenylyltransferase [Corynebacterium amycolatum SK46] gi|213951109|gb|EEB62507.1| tRNA adenylyltransferase [Corynebacterium amycolatum SK46] Length = 480 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 21/258 (8%) Query: 1 MVSIVQHKWFHDSDLINILSL-LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 M+++ +S++++ L+ + + +VGG+VRD+L+ D+D T P+ Sbjct: 1 MLAVADQAIAKESEILDSLAAAFSAAGHRLYLVGGSVRDALLGRLGVDLDFTTDARPEVT 60 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSL 118 I V T I +GT+ + +ITT R+D R +V F + D + Sbjct: 61 RAILDDWADIVWDTGIEFGTLSAERHGRQMEITTFRADTYDQVSRNPEVTFGDTLEGDLI 120 Query: 119 RRDFTINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDF N+ L+ D +D +GG DL + G +D LR+LR RF Sbjct: 121 RRDFRCNSIAVELHGDGTRTFLDPLGGFEDLVAGVLDTPGAPEISFGDDPLRMLRACRFA 180 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSS-------ERIWSEINKLLEAKNPLNAIVHMYN 227 + G + + K LK +SS ERI +E+NKL+ +P I M Sbjct: 181 SQL--------GFDVAPRVLKALKEMSSEIDRITVERISTELNKLILGADPSRGIDLMVE 232 Query: 228 GGIFKEIFLDVQEISLDQ 245 G+ + ++ ++ + Q Sbjct: 233 SGLADRVLPEISDMRMTQ 250 >gi|291455678|ref|ZP_06595068.1| tRNA adenylyltransferase [Bifidobacterium breve DSM 20213] gi|291382606|gb|EFE90124.1| tRNA adenylyltransferase [Bifidobacterium breve DSM 20213] Length = 472 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 10/253 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D ++ P++ I + + +GT+ + R+ Sbjct: 24 ALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFWDMGRKFGTLGAMRRRAD 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141 ++TT RSD D R +V + + D RRDFT+NA+ + +D GG Sbjct: 84 GTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPFGG 143 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 +DL ++ D +D LR++R RF A G +I D A + ++I+S Sbjct: 144 ASDLAKGVLRTPVDPSQSFDDDPLRMMRAVRFVAQLG-FSIAPDAAEAISSMRDRIEIVS 202 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ K+L + P + + G+ +F ++ + L Q+ + + VFE + Sbjct: 203 AERVRDELTKMLLSDRPRAGLEALVESGLADIVFPEIPALQL-QIDEHHRHKDVFEHTMI 261 Query: 262 SLLRFIVLISWQD 274 L R I L + D Sbjct: 262 VLERAITLETGPD 274 >gi|121591044|ref|ZP_01678360.1| polyA polymerase [Vibrio cholerae 2740-80] gi|121547115|gb|EAX57248.1| polyA polymerase [Vibrio cholerae 2740-80] Length = 420 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 30/265 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY------- 68 + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 2 LKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRL 61 Query: 69 -------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 ++ + G + + + + L+ D Y + D+ RRD Sbjct: 62 AHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTI------DEDAERRD 115 Query: 122 FTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 FTINA+Y AD + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 116 FTINAMYYNIADY--SIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 172 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 173 DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 232 Query: 239 QE-ISLDQLSQVIEAEQVFEWKIDS 262 E + D S+ EQ+ + +D+ Sbjct: 233 AEHFTADHSSKT---EQMLDLVLDA 254 >gi|78485869|ref|YP_391794.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2] gi|78364155|gb|ABB42120.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2] Length = 484 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 24/244 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + +++L L + + +VGG VRD L+ L +D D+ T P+++ +F K+R ++I Sbjct: 45 DKEALDVLYGLKRAGYDAYLVGGGVRDILLGLEPKDFDVVTNAEPEQIKGVF-KSRCRLI 103 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD---LITDGRYAKVV-----------FTRD----- 112 + + + ++ T R D + GR K V RD Sbjct: 104 --GRRFRLAHVYFGRNVVEVATFRGDGDGQKSAGRSRKQVNHTRAVDDTGRLVRDNVYGS 161 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D RRDFTIN+LY + + V+DY GG+ D+ ++ IGD R ED +R++R Sbjct: 162 IEEDVWRRDFTINSLYYNIRDFSVLDYTGGMEDIEKGQLRLIGDPEMRYREDPVRMIRAI 221 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A G + I+ + + LK +S R++ E+ KL + + + + G+F Sbjct: 222 RFAAKLGFE-IEPNTKAPIYELAHLLKDVSHARMFEEVLKLFHSGVAIEVFEKLRHFGLF 280 Query: 232 KEIF 235 +F Sbjct: 281 TFLF 284 >gi|320539917|ref|ZP_08039576.1| poly(A) polymerase I [Serratia symbiotica str. Tucson] gi|320030103|gb|EFW12123.1| poly(A) polymerase I [Serratia symbiotica str. Tucson] Length = 435 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 19/237 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK +S +VGG VRD L+ +D DI T P++V ++F R Sbjct: 18 ENALKVLYRLNKSGYESYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL---- 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--------VVFTRD-----WKADSLR 119 + ++ + ++ T R Y K + RD + D+ R Sbjct: 74 VGRRFRLAHVMFGPEIIEVATFRGHHEQTPEYDKNSSQQAQNGMLLRDNIFGSIEEDAQR 133 Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY + DYV GL DL+ R I+ IGD R ED +R+LR RF A G Sbjct: 134 RDFTINSLYYGVADFTLRDYVNGLRDLQQRVIRLIGDPETRYREDPVRMLRAVRFAAKLG 193 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E KLL A + + +F+ +F Sbjct: 194 -MTISDETAEPIPRLASLLHEIPPARLFEESLKLLLAGYGYPTYLKLCEYQLFQPLF 249 >gi|139436923|ref|ZP_01771083.1| Hypothetical protein COLAER_00056 [Collinsella aerofaciens ATCC 25986] gi|133776570|gb|EBA40390.1| Hypothetical protein COLAER_00056 [Collinsella aerofaciens ATCC 25986] Length = 464 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 3/210 (1%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG VRD+LM D+D+ + L V+ + I Sbjct: 16 LRVLRALEAAGLEAWYVGGWVRDALMGYPSHDVDMCCSGLWQESKAALEAAGIAVVESGI 75 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSL-RRDFTINALYADQQG 133 +G I I + ++TT R D TDGR+ + V D L RRDFT+NA+ + Sbjct: 76 KFGGITAISDGERIEVTTYRLDGFYTDGRHPQSVERAASLEDDLARRDFTVNAMAWHPER 135 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D G DL + I+ +GD R ED LR+LR RF + I+ + A + Sbjct: 136 GLVDRYDGQGDLERKLIRAVGDPKRRFNEDALRMLRAVRFACRL-DFMIEPETKRALAEC 194 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIV 223 L ++ ER+ E+ +L + +A++ Sbjct: 195 APLLDAVARERVGIELEGILSTGHGGDAML 224 >gi|57491651|gb|AAW51389.1| GekBS073P [Gekko japonicus] Length = 178 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 5/135 (3%) Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVAS 190 G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K D D L A Sbjct: 7 GTLFDYFNGYEDLKNKKVRFVGQAKQRIQEDYLRILRYFRFYGKIVDKPGDHDPETLEAI 66 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH-MYNGGIFKEIFLDVQEISLDQLSQV 249 + KGL +S ERIW E+ K+L N +N ++H MY+ + I L SL++ ++V Sbjct: 67 AENAKGLAGISGERIWVELKKILTG-NHVNHLIHLMYDLDVAPYIGLPAN-ASLEEFNKV 124 Query: 250 IEAEQVFEWKIDSLL 264 + + F K +LL Sbjct: 125 SKNVEGFSPKPMTLL 139 >gi|254282332|ref|ZP_04957300.1| poly(A) polymerase [gamma proteobacterium NOR51-B] gi|219678535|gb|EED34884.1| poly(A) polymerase [gamma proteobacterium NOR51-B] Length = 432 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 19/244 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + ++S L ++ IVGGAVRD L+ +D D+ T P+++ +F R+++ Sbjct: 21 VKVVSRLKSKGYEAYIVGGAVRDLLLGGQPKDFDVGTNATPEQIKAVFKNARIIGRRFQI 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG-------RYAKVVFTRD-----WKADSL 118 + I++ + + + + G + K + RD + D+ Sbjct: 81 VHVRFGPEIIEVTTYRGHHASGSAPASGKDSGNTKAHSRQSDKGLLLRDNVYGTLEEDAA 140 Query: 119 RRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRD TINALY D + + V+D + G+ D+ R ++ IG+ H R ED +R+LR RF A Sbjct: 141 RRDLTINALYYDPEDESVLDQLNGMADVEARLVRVIGEPHTRYREDPVRMLRVLRFAAKL 200 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +++S+ A + L + S R++ E KL A +Y G+ +F + Sbjct: 201 -QFDVESETDHAIAECAPLLAEIPSARLFDEFLKLFMAGYATPTFKLLYRYGLLHHLFPE 259 Query: 238 VQEI 241 + Sbjct: 260 PTRV 263 >gi|117921843|ref|YP_871035.1| poly(A) polymerase [Shewanella sp. ANA-3] gi|117614175|gb|ABK49629.1| poly(A) polymerase [Shewanella sp. ANA-3] Length = 435 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 16/237 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 15 ENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRV---- 70 Query: 73 TSISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDF 122 + I+ + ++ T R S +GR + + D+ RRDF Sbjct: 71 VGRRFRLAHIVFGRDVIEVATFRGHHGDSNEKISKANAEGRLLRDNVYGEIDEDAERRDF 130 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR R FA Sbjct: 131 TVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAVR-FATKLSMA 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I+ + LK + + R++ E+ KL A + M +F +F V Sbjct: 190 IEEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFAPLFPQV 246 >gi|294789547|ref|ZP_06754782.1| multifunctional CCA protein [Simonsiella muelleri ATCC 29453] gi|294482484|gb|EFG30176.1| multifunctional CCA protein [Simonsiella muelleri ATCC 29453] Length = 416 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 19/215 (8%) Query: 31 IVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+ L V+D D + D + + F + + P + T ++Y Sbjct: 6 LVGGAVRDALLGLDVKDRDWVVVGAEAADLLAQGF-RAVGQDFPVFLHPTT-----HEEY 59 Query: 89 FDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 T R I+ G Y F D + D LRRD TINA+ D+ G +ID GG +D Sbjct: 60 ALARTERK--ISKG-YTGFQFYADKSVTLEQDLLRRDLTINAMAQDEHGNIIDPFGGQSD 116 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSE 203 L+N+ ++ + A ED +RILR RF A YG ++ L+ + A + L +E Sbjct: 117 LQNKILRHVSAA---FAEDPVRILRIARFAARYGFTVAPETMQLMCDMVANGEVDALVAE 173 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 R+W E K L KNP I + G + + +V Sbjct: 174 RVWQEFAKGLMEKNPRKMIEILRECGALRVLLPEV 208 >gi|289805479|ref|ZP_06536108.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 213 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 21/178 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 35 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVADF--TVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAA 206 >gi|296392447|ref|YP_003657331.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Segniliparus rotundus DSM 44985] gi|296179594|gb|ADG96500.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Segniliparus rotundus DSM 44985] Length = 513 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 22/226 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+ ++ ++ T I++GT+ + + Sbjct: 77 LVGGSVRDALLGRLGDDLDFTTDARPEHTQKLLRGWAEEMWDTGIAFGTVGALKNGNKLE 136 Query: 91 ITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 ITT R D R V F D + D RRDF +NA L A G+ +D +GGL D+ Sbjct: 137 ITTFRKDDYDQSSRNPAVDFGTDLRTDLTRRDFRMNAMAVSLTAQGCGEFVDPLGGLEDV 196 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--------EKNIDSDGLVASIKAKKGL 197 I +D LR+LR RF A G +D G + I A Sbjct: 197 LAGRIDTPDTPEISFGDDPLRMLRAARFAAQLGFTWSPRVARATVDMAGEITRITA---- 252 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ER+ +E+ KL+ ++ + + + + G+ + + +V ++ L Sbjct: 253 -----ERVGAELQKLIVGEHAVEGVELLVDSGLAEFVLPEVPQLQL 293 >gi|78484585|ref|YP_390510.1| metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] gi|123556038|sp|Q31J37|CCA_THICR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|78362871|gb|ABB40836.1| metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] Length = 416 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 20/200 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 K+ +VGGAVRD+L+N+ V D D + D + + FS+ K P + T + Sbjct: 2 KTYLVGGAVRDALLNIPVYDHDWVVVGATPQDMLEQGFSQVG-KDFPVFLHPKT-----K 55 Query: 86 KKYFDITTLRSDLITDGRYA-KVVF--TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++Y T R G + +V F T + D +RRD TINA+ D +G+++D GG Sbjct: 56 EEYALARTERKS--GQGYHGFEVSFDPTVTLEDDLIRRDLTINAMAQDAEGQIVDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL ++ ++ + +A ED LR+LR RF A ++ L+ S+ A L Sbjct: 114 QDLADKVLRHVSEA---FAEDPLRVLRVARFAAKLSAFGFTLAPETAALMKSMSASGELS 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L+ ER+W E+ K L + P Sbjct: 171 ALTPERVWQEVVKALNTQTP 190 >gi|9971894|gb|AAG10456.1|AF279106_18 predicted poly(A) polymerase [uncultured marine gamma proteobacterium EBAC31A08] Length = 410 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 22/212 (10%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I+++ L K ++ +VGG VRD+L L +D DIAT P+++ + F +R Sbjct: 12 ISVVQDLQKNNFQAYLVGGCVRDALTGLEPKDFDIATNATPEQIRKTFKASRI----IGK 67 Query: 76 SYGTIKIICRKKYFDITTLRS--------DLITDGRYAKVVFTRDW---KADSLRRDFTI 124 + + + R + ++ T RS +++TD K++ +W + D RRDFT+ Sbjct: 68 RFKLVHVFNRSELLEVATFRSGSDQEDGENIVTDS-TGKILRDNNWGTLEQDCHRRDFTV 126 Query: 125 NAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NAL Y K+ D+ GL + + I IGD R ED +R LR RF + N Sbjct: 127 NALYYCPVTKKIEDHNDGLKHIHKKVIVSIGDPQRRFEEDPVRSLRAIRF---SNKLNFK 183 Query: 184 SDGLVASIKAKKG--LKILSSERIWSEINKLL 213 D LV KG L +S+ R++ E K+ Sbjct: 184 IDNLVKDAIYDKGHLLSGISNARLFDEFCKIF 215 >gi|324112445|gb|EGC06422.1| poly(A) polymerase [Escherichia fergusonii B253] gi|325496076|gb|EGC93935.1| poly(A) polymerase I [Escherichia fergusonii ECD227] Length = 454 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 35 ENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL---- 90 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 91 VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 150 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 151 DFTINSLYYSVADFTVRDYVGGMQDLKEGIIRLIGNPETRYREDPVRMLRAVRFAAKLNM 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 211 Q-ISPETAEPIPRLAALLNDVPPARLFEESLKLLQA 245 >gi|115374966|ref|ZP_01462237.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1] gi|310820531|ref|YP_003952889.1| poly(a) polymerase [Stigmatella aurantiaca DW4/3-1] gi|115367993|gb|EAU66957.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1] gi|309393603|gb|ADO71062.1| Poly(A) polymerase [Stigmatella aurantiaca DW4/3-1] Length = 576 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 44/231 (19%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + ++ L++ ++ +VGG VRD L+ +D D+AT+ P V F R Sbjct: 112 DPDALKVVLRLHQHGHQAYLVGGCVRDLLLGRRPKDFDVATSAHPGEVRATFRNCR---- 167 Query: 72 PTSISYGTIKIICRK-----------KYFDITTLRSDLIT------------DGRYAKVV 108 +I R+ K +++T R++ + +G ++ Sbjct: 168 ----------LIGRRFRLAHVYFKGGKIIEVSTFRANPLEMEAPEEEGAENGNGNGDDLL 217 Query: 109 FTRD-----WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162 T D + D+ RRDFTIN L+ D +G+VIDYV G DL R I+ IGD R+ E Sbjct: 218 ITHDNVFGTAEQDARRRDFTINGLFYDVTEGRVIDYVRGRRDLDERYIRTIGDPEIRMRE 277 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 D +RILR RF + G +I+S A A + L + R+ E +L+ Sbjct: 278 DPVRILRAVRFASKLG-LDIESRTYAAMEGAVEDLPRCAPARLLEETFRLI 327 >gi|71282596|ref|YP_270865.1| tRNA nucleotidyltransferase [Colwellia psychrerythraea 34H] gi|71148336|gb|AAZ28809.1| tRNA nucleotidyltransferase [Colwellia psychrerythraea 34H] Length = 445 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 21/223 (9%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYG 78 + E S +VGGAVRD L+N ++D D + +I ++++++ K P + Sbjct: 8 IKNSELNSYLVGGAVRDKLLNRPIKDEDYLVVGASI--EQMIKLGYHQVGKDFPVFLHPK 65 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW--KADSLRRDFTINALYADQQGKVI 136 T + +Y T R ++ F D + D LRRD T+NA+ D GK+I Sbjct: 66 T-----KAEYALARTERKQGQGYTGFS-CYFAPDVTIEQDLLRRDLTVNAMAMDHNGKII 119 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIK 192 D G NDL +R ++ + DA +ED LR+LR RF A Y + ++ L+ I Sbjct: 120 DPYNGQNDLNDRILRHVSDA---FIEDPLRVLRVARFAARYHKYGFTIADETLTLMQEIS 176 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 A LK L+ ER+W E+ +L A N+ + N +F E+ Sbjct: 177 ASGELKCLTPERVWQEM-QLSLADGGANSDTNSGNPEVFFEVL 218 >gi|319442217|ref|ZP_07991373.1| tRNA nucleotidyltransferase [Corynebacterium variabile DSM 44702] Length = 485 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 12/223 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+ V I + V T I++GT+ + + Sbjct: 32 LVGGSVRDALLGRLSHDLDFTTDARPEVVTGILDEVASTVWDTGIAFGTVSGLIHGMTVE 91 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 ITT R+D DG R +V + D +RRDF NA L AD ++ D + GL D Sbjct: 92 ITTFRADQY-DGSSRNPEVTYGTSLDEDLVRRDFRGNAIALELSADGAHELRDPLNGLED 150 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSS 202 L N + +D LR+LR RF + G + V + +I ++ Sbjct: 151 LVNGVLDTPAAPEQSFHDDPLRMLRACRFASQLG---FEVAPRVQDAMTRMAAEIDRITV 207 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ER+ +E++KL+ P + M GI + ++ + L Q Sbjct: 208 ERVAAELDKLMLGAEPWTGLDLMVATGIAAHVLPELPALQLTQ 250 >gi|253991026|ref|YP_003042382.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782476|emb|CAQ85640.1| multifunctional cca protein [Photorhabdus asymbiotica] Length = 408 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V++ D + P+ ++ + K P + T + + Sbjct: 5 LVGGAVRDRLLNLPVKERDWVVVGGTPEELLSQGYQQVGKDFPVFLHPKTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S L G + D LRRD TINA+ G+ +D G++DL NR Sbjct: 63 --TERKSSLGYTGFTCYAAPNVTLEDDLLRRDLTINAIAQTPDGEFVDPYHGISDLNNRI 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSERI 205 ++ + DA ED LR+LR RF FAH G ++ L++++ L IL+ ER+ Sbjct: 121 LRHVSDA---FSEDPLRVLRVARFAARFAHLGFTIAPETQALMSNMATNGELSILTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E K L +P + + G +F ++ + + A + + +ID+ + Sbjct: 178 WKETEKALSTYSPQVFFQILRDCGALAVLFPEINNLF------GVPAPEKWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK-- 323 ++ +L +A + + + R+ + C+ K L+ PE Y +G Sbjct: 232 ALM---------VLKVAAELTNEVDSRFAAL----CHDLGKGLTPPEQWPHHYGHGPAGV 278 Query: 324 ----VMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + +L++ LA +Y++L H +L++ + W+KP Sbjct: 279 KLVDQLCQRLRVPNSARDLAKLAANYHDLVHTVDQLRPKTLLKLFDAVDAWRKP 332 >gi|149927059|ref|ZP_01915317.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [Limnobacter sp. MED105] gi|149824280|gb|EDM83500.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [Limnobacter sp. MED105] Length = 393 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 97/391 (24%), Positives = 169/391 (43%), Gaps = 61/391 (15%) Query: 31 IVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGGAVRD+LM + D D + T+ D ++ P + + + Sbjct: 30 VVGGAVRDALMGRASSDRDWVVVGATV--DHMLAA------GFTPVGSDFPVF--LHPRT 79 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ + Y F + + D RRDFT+NA+ + +G +ID GL Sbjct: 80 HEEYALARTERKSGHGYKGFTFHAEPSVTLEEDLARRDFTVNAMAMNAEGGLIDPFQGLA 139 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-----GEKNIDSDGLVASIKAKKGLK 198 DL N+ ++ + A ED LR+LR RF A + E+ +D L ++A LK Sbjct: 140 DLENKCMRHVSPA---FSEDPLRVLRLARFLARFLDFSVAEETMD---LCRELQASGELK 193 Query: 199 ILSSERIWSEINKLLEAKNPLNAI--VHMYNG-GIFKEI----FLDVQEISLDQLSQVIE 251 L ER+++E+ K + + P I + NG G F + D L+ + Sbjct: 194 HLVPERVYAELTKGMGEEKPSRMIKLISKLNGWGELAPACSVPFSSFDKPEYDCLNSLSG 253 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSI 310 AE W + SL F+ L I ++AK + LPR I + +C F Q+ + Sbjct: 254 AEA--RW-VYSLGFFLSL------AHIKALAKAWRLPRTIEDLSVLACHCLAFVQQQSTD 304 Query: 311 PEIKKLFY----LYGDKVMIAKLKIFLA-LHYNNLTHQDTCFILQVLSDII--HWKKPLF 363 P+ F+ LY + ++ +A +H H F+ Q ++++ H+K Sbjct: 305 PDSFARFFGQVDLYRKPARLRQVNQLVAQIHGEGRVH---AFVEQAVAELEQGHYKA--- 358 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 GD +V + P G++V + + + W+ Sbjct: 359 -FLGDKIVNH--PLGEQVAQVAANARLAWVE 386 >gi|194365293|ref|YP_002027903.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3] gi|194348097|gb|ACF51220.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3] Length = 461 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 16/193 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N +D D+AT P++V ++F R + ++ ++ + Sbjct: 60 LVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRL----IGRRFRLAHVVFGREIIE 115 Query: 91 ITTLRS---DLITDGRYAKVVFTRD-----WKADSLRRDFTINALY-ADQQGKVIDYVGG 141 + T R+ D D + RD + D++RRDFT NALY A + V DY GG Sbjct: 116 VATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIRRDFTCNALYYAIEDFSVRDYTGG 175 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 D++ R +K IGD R ED +R+LR R A G + +G A I L Sbjct: 176 FEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQI--EEGTAAPIPQLASLLNEA 233 Query: 201 SSERIWSEINKLL 213 + R++ E+ KL Sbjct: 234 APARLFEEVLKLF 246 >gi|308050920|ref|YP_003914486.1| poly(A) polymerase [Ferrimonas balearica DSM 9799] gi|307633110|gb|ADN77412.1| poly(A) polymerase [Ferrimonas balearica DSM 9799] Length = 449 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 29/250 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L+K ++ +VGG VRD L++ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHKAGYEAYLVGGGVRDLLLSHQPKDFDVATNATPEQIRKLFRNCRL---- 91 Query: 73 TSISYGTIKIICRKKYFDITTLR------SD----------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ TLR SD L+ D Y + D Sbjct: 92 VGRRFRLAHILFGRDIIEVATLRGHHAESSDKHARADDSGRLLRDNVYGSI------DED 145 Query: 117 SLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+N LY D V DY GG+ DL+ R ++ IGD R ED +R+LR R FA Sbjct: 146 AERRDFTVNGLYYDIADYSVRDYFGGMADLKARRLRLIGDPETRYREDPVRMLRAVR-FA 204 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + ID+ + L + + R++ E KL A L+ M G+F +F Sbjct: 205 TKLDFTIDTQTGKPIPALAELLSDIPAARLFEESLKLFLAGKALDNFRLMREYGLFAPMF 264 Query: 236 LDVQEISLDQ 245 +QE L Q Sbjct: 265 -PMQEKLLQQ 273 >gi|238760050|ref|ZP_04621201.1| Phosphatase [Yersinia aldovae ATCC 35236] gi|238701737|gb|EEP94303.1| Phosphatase [Yersinia aldovae ATCC 35236] Length = 412 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL+V + D + P++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLTVTEQDWVVVGATPEQLLAQGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R S YA T + D LRRD TINA+ G++ D G DL Sbjct: 60 LARTERKSGSGYTGFTCYAAPDVT--LEEDLLRRDLTINAIARSADGQLFDPYHGQQDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 NR ++ + DA ED LR+LR RF FAH G ++ L+ ++ L L+ Sbjct: 118 NRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFSVAAETQSLMTTMAQSGELSALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E K L+ ++P + + G +F +++ + Sbjct: 175 ERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERL 213 >gi|148984905|ref|ZP_01818158.1| predicted S-transferase [Streptococcus pneumoniae SP3-BS71] gi|147922927|gb|EDK74043.1| predicted S-transferase [Streptococcus pneumoniae SP3-BS71] gi|332073894|gb|EGI84372.1| poly A polymerase head domain protein [Streptococcus pneumoniae GA41301] gi|332200997|gb|EGJ15068.1| poly A polymerase head domain protein [Streptococcus pneumoniae GA47901] Length = 325 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 31/334 (9%) Query: 89 FDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 +++TT R+ D+ D R V F R + D RRDFT+NA D+ G+++D GL DL Sbjct: 9 YEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDLFHGLEDLE 68 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + ++ +G A R ED LRI+R FRF A G ++ + A L+ +S ER + Sbjct: 69 KQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTLTPLLEKISVERTF 127 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IEAEQVFEWKIDSLL 264 E +KLL A + M + +L S D+L+++ +E + FE + Sbjct: 128 VEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLETDFTFESSEQAWA 185 Query: 265 RFIVLISWQDKKSIL-SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 + + ++ +S L S ++++ LI L++ E +L K Sbjct: 186 ALLWALEIENAQSFLKSWKTSRQFAKQVQDLLI----------ILALRENGEL-----SK 230 Query: 324 VMIAKLKIFLALHYNNLTH-QDTCFILQVLSD-----IIHWKKPLFPLTGDDVVK-YGIP 376 + I L L NL Q Q +++ IH KK + + GD ++K YG Sbjct: 231 RDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEI-QINGDILIKEYGYQ 289 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 PG +G IL + ++ + ++E +H LR+ Sbjct: 290 PGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323 >gi|153216761|ref|ZP_01950601.1| poly(A) polymerase [Vibrio cholerae 1587] gi|124114149|gb|EAY32969.1| poly(A) polymerase [Vibrio cholerae 1587] Length = 417 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 30/253 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--------------KVIPT 73 ++ +VGG VRD L+ +D D+AT P+++ ++F R ++ Sbjct: 11 EAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEV 70 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY---AD 130 + G + + + + L+ D Y + D+ RRDFTINA+Y AD Sbjct: 71 ATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTI------DEDAERRDFTINAMYYNIAD 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + DY GG+ DL +R ++ IGD R ED +R+LR RF + +I+ D Sbjct: 125 Y--SIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFDIEEDTAAPI 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQV 249 + L+ + + R++ E K+L+A + L M +F+++F + E + D S+ Sbjct: 182 EQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEHFTADHSSKT 241 Query: 250 IEAEQVFEWKIDS 262 EQ+ + +D+ Sbjct: 242 ---EQMLDLVLDA 251 >gi|113971232|ref|YP_735025.1| metal dependent phosphohydrolase [Shewanella sp. MR-4] gi|123324780|sp|Q0HG49|CCA_SHESM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|113885916|gb|ABI39968.1| metal dependent phosphohydrolase [Shewanella sp. MR-4] Length = 416 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 24/249 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P++++++ + K P + T +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDFMVVGATPEQMLQLGYRQVGKDFPVFLHPKT-----QQEYA 59 Query: 90 DITTLRSDLITDGR---YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G YA T + D LRRD TINA+ D+ G + D G+ D+ Sbjct: 60 LARTERKVGLGYGGFSCYASPEVT--LEQDLLRRDLTINAIAQDEAGNLHDPFHGIADIE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A + E ++ L+ + + L L+ Sbjct: 118 ARQLRHVSAA---FSEDPLRVLRVARFAARFHGLGFEIAPETMALMQHMSQTEELTALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E++K L +P + G K +F ++ D L V + E+ + +ID+ Sbjct: 175 ERVWQEVDKSLGGPHPEVFFEVLRQCGALKVLFPEI-----DALFGVPQPEK-WHPEIDT 228 Query: 263 LLRFIVLIS 271 L +++++ Sbjct: 229 GLHTMMVLA 237 >gi|323706294|ref|ZP_08117860.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534346|gb|EGB24131.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacterium xylanolyticum LX-11] Length = 467 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 24/234 (10%) Query: 15 LINILS-LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKVIP 72 LIN L +L+ +K IVGG +RD ++N+++ D D A V + + K + +P Sbjct: 4 LINRLKRILSDEAEKVYIVGGTIRDRILNVNISDYDFAVLGDAASVSKLVCDKLKGSYVP 63 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + GT +++ D T +R + I + D + RDFTINA+ Sbjct: 64 YAEDRGTYRVVYENVVLDFTQIRGENIDE--------------DLIHRDFTINAMAIRLN 109 Query: 133 -----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 ++D +GGL DLR + IK +G + +D LR+LR RF A Y +ID D Sbjct: 110 DFFDVDLIVDPLGGLKDLREKKIKCVGKSSFD--DDPLRMLRAIRFAAKYN-FSIDEDSK 166 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + +K +SSERI SEI +L++K + M G+ +F ++ E+ Sbjct: 167 NLIREKADLIKNVSSERIMSEIYSILKSKESFKYLQMMDELGLIDALFPEIAEM 220 >gi|307728540|ref|YP_003905764.1| poly(A) polymerase [Burkholderia sp. CCGE1003] gi|307583075|gb|ADN56473.1| poly(A) polymerase [Burkholderia sp. CCGE1003] Length = 532 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 87 IRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARIIGRRFQI 146 Query: 68 ------YKVIPTSISYGTIKIIC------RKKYFDITTLRSDLI-TDGRYAKVVFTRDWK 114 ++I TS + R+ D R+ + GR + + Sbjct: 147 VHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASGRVLRDNVWGEQH 206 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 207 EDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYREDPVRMLRVVRF 266 Query: 174 FA 175 A Sbjct: 267 AA 268 >gi|170691343|ref|ZP_02882508.1| poly(A) polymerase [Burkholderia graminis C4D1M] gi|170143548|gb|EDT11711.1| poly(A) polymerase [Burkholderia graminis C4D1M] Length = 533 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 88 IRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARIIGRRFQI 147 Query: 68 ------YKVIPTSISYGTIKIIC------RKKYFDITTLRSDLI-TDGRYAKVVFTRDWK 114 ++I TS + R+ D R+ + GR + + Sbjct: 148 VHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASGRVLRDNVWGEQH 207 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 208 EDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYREDPVRMLRVVRF 267 Query: 174 FA 175 A Sbjct: 268 AA 269 >gi|186477240|ref|YP_001858710.1| poly(A) polymerase [Burkholderia phymatum STM815] gi|184193699|gb|ACC71664.1| poly(A) polymerase [Burkholderia phymatum STM815] Length = 538 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 24/188 (12%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR------ 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P++V ++F + R Sbjct: 90 NAIRVTEGLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPEQVQKLFRRARIIGRRF 149 Query: 68 --------YKVIPTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTR 111 ++I TS ++ + L+ D + GR + Sbjct: 150 QIVHVQFGQEIIETS-TFRALMDAPPADSPPPRRLKRDELDRRTHAVDASGRVLRDNVWG 208 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFT+NA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 209 EQHEDATRRDFTVNAMYYDPATQTVLDYHNGMADVRARLLRMIGDPATRYREDPVRMLRV 268 Query: 171 FRFFAHYG 178 RF A G Sbjct: 269 VRFAAKLG 276 >gi|213021254|ref|ZP_03335701.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 206 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 21/178 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 24 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL---- 79 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD T R + RD + D+ RR Sbjct: 80 VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRR 139 Query: 121 DFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 DFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 140 DFTINSLYYSVADF--TVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAA 195 >gi|261822804|ref|YP_003260910.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pectobacterium wasabiae WPP163] gi|261606817|gb|ACX89303.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pectobacterium wasabiae WPP163] Length = 414 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 154/355 (43%), Gaps = 51/355 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL++L V + D + P+ ++ + K P + + +Y Sbjct: 5 LVGGAVRDSLLSLPVTEKDWVVVGATPEHLLAQGYQQVGKDFPV-----FLHPVSHDEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ +QG++ID G DL NR Sbjct: 60 LARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTEQGELIDPYHGRRDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF FAH G + ++ L+ + + L L+ ER Sbjct: 120 VLRHVSDA---FGEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMVHEGELAYLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E K L +P + + G +F +V D L V A + +ID+ + Sbjct: 177 VWKETEKALSTSSPDVYFQVLRDCGALAVLFPEV-----DNLYGV-PAPAKWHPEIDTGI 230 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-- 322 ++ + +MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 231 HTMMTV---------AMAARLSPEIDVRFATL----CHDVGKGLTPPELWPRHHGHGPAG 277 Query: 323 ----KVMIAKLKIF--------LALHYNNLTHQDTCF----ILQVLSDIIHWKKP 361 + + +L++ L Y++L H +L++ I W+KP Sbjct: 278 VKLVEALCQRLRVPNPIRDLAKLVAEYHDLVHTVQVLQPKTLLKLFDAIDVWRKP 332 >gi|294790211|ref|ZP_06755369.1| tRNA adenylyltransferase [Scardovia inopinata F0304] gi|294458108|gb|EFG26461.1| tRNA adenylyltransferase [Scardovia inopinata F0304] Length = 468 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/326 (23%), Positives = 147/326 (45%), Gaps = 25/326 (7%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR---- 85 +VGG VRD ++ S D+D T+ PD+ + +GT+ + R Sbjct: 21 ALVGGPVRDMILGRSAHDLDFCTSATPDQFEPLLKAWGDGFWDMGRKFGTLGTMKRLPQG 80 Query: 86 -KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142 + +ITT R+D + R +V + + D RRDFTIN++ +D GG+ Sbjct: 81 EEVSIEITTYRTDAYQPNSRKPQVDYGSSLQGDLSRRDFTINSMAVRLPSLDFVDPFGGM 140 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 +DL R ++ A +D LR++R RF A + +D+ ++S+ + ++I+S Sbjct: 141 DDLSKRLLRTPVAAEQSFSDDPLRMMRAVRFVAQLDFRIALDTAEALSSMVDR--IQIVS 198 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ KLL +++P + + G+ + ++ + +D+ + VF+ + Sbjct: 199 AERVRDELTKLLLSQHPRKGLESLVESGLADYVVPELPALHMDR-DPNHHHKDVFDHTMK 257 Query: 262 SLLRFIVLISWQDKK--------SILSMAKKFSLPREIRYFL---ISFFNCNFNQKTLSI 310 L R I L + D + ++ PR R+ +SF++ + ++ Sbjct: 258 VLERAIALETSPDGPVPAPDLVLRLAALMHDIGKPRTRRFEPGGKVSFYHHDLVGAKMT- 316 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALH 336 K+L L DK ++ + + LH Sbjct: 317 --RKRLTSLRFDKHVVEDVSSLVELH 340 >gi|330980971|gb|EGH79074.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 409 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|152979389|ref|YP_001345018.1| poly(A) polymerase [Actinobacillus succinogenes 130Z] gi|150841112|gb|ABR75083.1| poly(A) polymerase [Actinobacillus succinogenes 130Z] Length = 421 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 22/237 (9%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------R 67 + + ++ LN+ ++ IVGG +RD L+ +D D+AT P+++ +F + R Sbjct: 5 NALTVVEKLNRNGYEAYIVGGCLRDLLLGKKPKDFDVATNARPEQIQTVFQRQCRLVGRR 64 Query: 68 YKVIPTSISYGTIKIICRKKYF-----DITTLRSD---LITDGRYAKVVFTRDWKADSLR 119 +++ I++ + + + R++ L+ D Y + + D+ R Sbjct: 65 FRLAHVMFGRDVIEVATFRAHHAESKNENQARRNEDGMLLRDNVYGTL------EQDAER 118 Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + I DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 119 RDFTVNALYYNPKDNTIHDYYHGIEDLKAGKLRLIGDPATRYQEDPVRMLRSIRFMAKL- 177 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +D K LK + R++ E KLL+A L M G+F ++F Sbjct: 178 DMFLDKPSEEPIRKLAPLLKNIPPARLFDESLKLLQAGAGLKTYRLMCEYGLFDQLF 234 >gi|330982609|gb|EGH80712.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 342 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|323524827|ref|YP_004226980.1| poly(A) polymerase [Burkholderia sp. CCGE1001] gi|323381829|gb|ADX53920.1| poly(A) polymerase [Burkholderia sp. CCGE1001] Length = 532 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 87 IRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRARIIGRRFQI 146 Query: 68 ------YKVIPTSISYGTIKIIC------RKKYFDITTLRSDLI-TDGRYAKVVFTRDWK 114 ++I TS + R+ D R+ + GR + + Sbjct: 147 VHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASGRVLRDNVWGEQH 206 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 207 EDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYREDPVRMLRVVRF 266 Query: 174 FA 175 A Sbjct: 267 AA 268 >gi|148825656|ref|YP_001290409.1| poly polymerase [Haemophilus influenzae PittEE] gi|148715816|gb|ABQ98026.1| probable poly polymerase [Haemophilus influenzae PittEE] Length = 514 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 97 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 153 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 154 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 207 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 208 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 267 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ ++ + LK + R++ E KLL+A + + G+F+ Sbjct: 268 KLDMFLEK--PSEQPISELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 323 Query: 233 EIF 235 ++F Sbjct: 324 QLF 326 >gi|330815625|ref|YP_004359330.1| putative polynucleotide adenylyltransferase [Burkholderia gladioli BSR3] gi|327368018|gb|AEA59374.1| putative polynucleotide adenylyltransferase [Burkholderia gladioli BSR3] Length = 533 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 26/189 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L ++ +D D+AT P V R+F + R +++ Sbjct: 84 VRVTDTLQQAGFRAFIVGGAVRDLLFGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 143 Query: 71 IPTSISYGTIKIIC-------------------RKKYFDITTLRSDLI-TDGRYAKVVFT 110 + I++ R+ D R+ + GR + Sbjct: 144 VHVQFGQELIEVSTFRALVDAPAEAPPADAPPPRRMKRDELDRRTHAVDASGRVLRDNVW 203 Query: 111 RDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR Sbjct: 204 GEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLR 263 Query: 170 FFRFFAHYG 178 RF A G Sbjct: 264 VVRFAAKLG 272 >gi|149190136|ref|ZP_01868412.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii AK1] gi|148836025|gb|EDL52986.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii AK1] Length = 449 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 20/236 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R Sbjct: 36 ENALKVLYRLNGAGYDAYLVGGGVRDLLLGEQPKDFDIATNATPEQIKKLFRNCRLIGRR 95 Query: 68 YKVIPTSISYGTIKIIC-------RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 +++ I++ ++K + L+ D Y + D+ RR Sbjct: 96 FRLAHIMFGRDIIEVATFRGHHQEQEKNVSQQSKEGMLLRDNVYGSI------DEDAERR 149 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF+INA+Y + I DY GG+ DL +R I+ IG+ R ED +R+LR RF A + Sbjct: 150 DFSINAMYYNIGDYSIHDYAGGMEDLEDRLIRLIGEPEVRYREDPVRMLRAIRFAAKL-D 208 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +I+ D + L+ + S R++ E KLL++ L + +F+++F Sbjct: 209 FDIEEDTAAPIEELAPLLRDIPSARLYEESLKLLQSGYGLETYHLLREYNLFQQLF 264 >gi|123443861|ref|YP_001007832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166233891|sp|A1JQW2|CCA_YERE8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|122090822|emb|CAL13704.1| tRNA nucleotidyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 414 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 14/218 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRDSL+NL V + D + P++++ + K P + + + Sbjct: 2 KTYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPV-----FLHPVTHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ +G++ D G D+ Sbjct: 57 EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQQDI 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILS 201 R ++ + DA ED LR+LR RF FAH G ++ L+A++ L L+ Sbjct: 117 EKRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ER+W E K L+ ++P + + G +F +++ Sbjct: 174 PERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIE 211 >gi|261338862|ref|ZP_05966720.1| hypothetical protein ENTCAN_05058 [Enterobacter cancerogenus ATCC 35316] gi|288318685|gb|EFC57623.1| polyA polymerase [Enterobacter cancerogenus ATCC 35316] Length = 447 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 18/216 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----R 67 + + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R Sbjct: 28 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRR 87 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + + +D T R + RD + D+ RRDF Sbjct: 88 FRLAHVMFGPEIIEVATFRGHHEASA--ADRTTSQRGQNGMLLRDNIFGSIEEDAQRRDF 145 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 TIN+LY AD V DYVGG+ DL++ I+ IG R ED +R+LR RF A Sbjct: 146 TINSLYYSVAD--FTVRDYVGGMQDLKDGLIRLIGTPETRYREDPVRMLRAVRFAAKLNM 203 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + + + R++ E KLL+A Sbjct: 204 R-ISPETAEPIPRLATLINDVPPARLFEEALKLLQA 238 >gi|237809404|ref|YP_002893844.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tolumonas auensis DSM 9187] gi|259585856|sp|C4LB55|CCA_TOLAT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|237501665|gb|ACQ94258.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tolumonas auensis DSM 9187] Length = 410 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 101/223 (45%), Gaps = 32/223 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDI------ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD+L+ L V + D A T+L + + P + + I Sbjct: 5 LVGGAVRDTLLGLPVTERDYVVVGSEAQTLLDLGYQPVGRDFPVFLHPQTKEEYALARIE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK+ T YA T + D LRRD TINA+ DQ G++ D GG++D Sbjct: 65 RKQGKGYTGFAC-------YAAPDVT--LEQDLLRRDLTINAIAQDQDGQLYDPYGGISD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L NR ++ I A ED LR+LR RF A + ++ L+ + L L Sbjct: 116 LNNRVLRHISPA---FSEDPLRVLRVARFAARFHHLGFYIAPETLALMRKLSRSGELNHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + ERIW EI K+L +NP IF EI D + +++ Sbjct: 173 TPERIWKEIEKVLSGRNP----------QIFFEILHDCEALNV 205 >gi|254517376|ref|ZP_05129433.1| multifunctional CCA protein [gamma proteobacterium NOR5-3] gi|219674214|gb|EED30583.1| multifunctional CCA protein [gamma proteobacterium NOR5-3] Length = 430 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 22/222 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIK 81 K+ +VGGAVRD L+N V++ D + P ++ + K + P S + Sbjct: 2 KNYLVGGAVRDELLNYPVKEQDWVVVGATPQELLDLGYTQVGKDFPVFLHPQSKEEYALA 61 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 RKK T + + V D + RRD TINA+ D G +ID GG Sbjct: 62 RTERKKGHGYTGFETHYDPN-----VTLEEDLQ----RRDLTINAIAKDDDGSLIDPYGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL +R ++ + DA LED LR+LR RF A Y ++ L+ I A+ L Sbjct: 113 AKDLESRLLRHVSDA---FLEDPLRVLRVARFAARYAHLGFAVAEETLILMTDIVAQGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + L ERIW E + L ++P I + G K + +V+ Sbjct: 170 EYLPPERIWVETERALRERDPQVFIEVLQQCGALKALLPEVE 211 >gi|238789190|ref|ZP_04632978.1| Phosphatase [Yersinia frederiksenii ATCC 33641] gi|238722722|gb|EEQ14374.1| Phosphatase [Yersinia frederiksenii ATCC 33641] Length = 412 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL V + D + P++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ G++ D G DL NR Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSNGELFDPHHGQQDLTNR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF FAH G ++ L+A++ L L+ ER Sbjct: 120 VLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTIAPETQSLMAAMAESGELSALTPER 176 Query: 205 IWSEINKLLEAKNP 218 +W E K L+ ++P Sbjct: 177 VWKETEKALKTQSP 190 >gi|78044411|ref|YP_361234.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996526|gb|ABB15425.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 441 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 85/327 (25%), Positives = 154/327 (47%), Gaps = 34/327 (10%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILP----DRVMRIFSKTRYKVIPTSISYGTIK 81 + K+ VGG+VRD L++ V+D+D+AT P +++++ F + + + Y + Sbjct: 13 DSKTYFVGGSVRDMLLSRPVKDVDLATFQKPREVGEKLLKAFGGNFFPLKEELLIY---R 69 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----KVID 137 ++ + T + D++ VF + D RRDFT+NAL G +VID Sbjct: 70 LVFKD---GGETYQVDILP-------VFGESLEEDLRRRDFTVNALALPVNGEFPREVID 119 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GG NDL+ R I+ I + ILED +RILR R G ++ + +V + + + Sbjct: 120 LFGGRNDLQARIIRMI--SAENILEDPVRILRGIRLAGELGFA-VEQETMVVFKQYIQYI 176 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 K + ER+ E+ K+ K + + +++ G F+ L ++E + +E V+ Sbjct: 177 KKMPGERVAEELKKIFTLKPAVPMVDMLFHTGFFEVFNLGLKE-GYELYQNYHHSETVYR 235 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 ID+L R L+ + I S + L +++FF+ TLS + + Sbjct: 236 HLIDTLNRMEELLE-DNPLGIRSDYPPYLLK------MVAFFHDIGKPGTLSYDKEGRTR 288 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQD 344 + +K + +LK F L Y N +H++ Sbjct: 289 FFGHEKESVNRLKPF--LDYLNFSHRE 313 >gi|71733413|ref|YP_272925.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627695|ref|ZP_06460649.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649014|ref|ZP_06480357.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. aesculi str. 2250] gi|123638353|sp|Q48NU4|CCA_PSE14 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|71553966|gb|AAZ33177.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320332063|gb|EFW87999.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. glycinea str. race 4] gi|330868484|gb|EGH03193.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 409 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|256826444|ref|YP_003150404.1| tRNA adenylyltransferase [Kytococcus sedentarius DSM 20547] gi|256689837|gb|ACV07639.1| tRNA adenylyltransferase [Kytococcus sedentarius DSM 20547] Length = 484 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + + D+D+ T PD + ++ + ++GTI + Sbjct: 39 ALVGGPVRDAFLGRTSPDLDLTTDARPDDIEKVLAGWADATWDLGRAFGTIGARKGETTL 98 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT RSD+ R +V F D D +RRDFT+NA+ +D GGL L+ Sbjct: 99 EVTTYRSDIYDRASRKPEVCFGHDLADDLVRRDFTVNAMALRLPDLGFVDPHGGLAALQA 158 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK-AKKGLKILSSERIW 206 + +D LR++R RF A G + S+ ++ ++K L+I+S+ERI Sbjct: 159 GELDTPTAPEESFADDPLRMMRACRFAAQLG--LVPSERVMDAMKDMAPSLEIISAERIR 216 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 E KL+ + +P + + G+ +++ ++ + L++ Sbjct: 217 DEFTKLILSDHPRAGLEVFVHTGLAEQVVPELPALQLER 255 >gi|306824009|ref|ZP_07457383.1| tRNA adenylyltransferase [Bifidobacterium dentium ATCC 27679] gi|304553007|gb|EFM40920.1| tRNA adenylyltransferase [Bifidobacterium dentium ATCC 27679] Length = 456 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 124/255 (48%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ D+D T+ P++ ++R F + + + +GT+ + R+ Sbjct: 10 ALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDM--GRKFGTLGAMRRR 67 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYV 139 + ++TT RSD D R +V + + D RRDFT+NA+ + +D Sbjct: 68 EDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPF 127 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG NDL ++ + +D LR++R RF A G + I+ + A + + I Sbjct: 128 GGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSDMVERIDI 186 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P I + + G+ +F ++ + L ++ + + VFE Sbjct: 187 VSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRHKDVFEHT 245 Query: 260 IDSLLRFIVLISWQD 274 + + R + L + D Sbjct: 246 MIVVDRAVALETGPD 260 >gi|319776497|ref|YP_004138985.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3047] gi|317451088|emb|CBY87321.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3047] Length = 416 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 14/214 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D I ++ + + K P ++ T +++Y Sbjct: 5 LVGGAVRDQLLGLPVKDRDWIVVGADHATLLSLGYQQVGKDFPVFLNPKT-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G T + D +RRD TINA+ + G+VID GG DL NR Sbjct: 60 LARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEVIDPYGGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A Y ++ L+A + L+ L++ER Sbjct: 120 ILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELEHLTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E K L KNP ++ G +F ++ Sbjct: 177 VWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|110806943|ref|YP_690463.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella flexneri 5 str. 8401] gi|122957198|sp|Q0T0K7|CCA_SHIF8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|110616491|gb|ABF05158.1| tRNA nucleotidyl transferase [Shigella flexneri 5 str. 8401] Length = 412 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 153/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ LSV+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|312883975|ref|ZP_07743692.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368433|gb|EFP95968.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122] Length = 451 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 125/265 (47%), Gaps = 11/265 (4%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D+ L + L G D + +VGG VRD L+ + +D DIAT P+++ ++F Sbjct: 29 ISRKKISDNALKVLYRLHGAGFD-AFLVGGGVRDLLLGQNPKDFDIATNATPEQIRQLFK 87 Query: 65 KTR-----YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 R +++ I++ R + + + S DG + D+ Sbjct: 88 NCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKDGMLLRDNVYGSIDEDAE 147 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+Y + I DY G+ DL ++ ++ IGD R ED +R+LR RF Sbjct: 148 RRDFTVNAMYYNIGDYSIHDYASGVEDLEDKLVRLIGDPETRYREDPVRMLRAIRFAVKL 207 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + + R++ E K+L++ L M G+F+++F Sbjct: 208 -DFDIEEDTAEPIERLALLLQDIPAARLYEESLKMLQSGYGLETYHLMREYGLFQQLFPT 266 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDS 262 + E D S + EQ+ + +DS Sbjct: 267 IAEYFTDDYSSM--TEQMLDLVLDS 289 >gi|218550309|ref|YP_002384100.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia fergusonii ATCC 35469] gi|226702065|sp|B7LQD4|CCA_ESCF3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|218357850|emb|CAQ90494.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia fergusonii ATCC 35469] Length = 412 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 152/354 (42%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDDGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP +++ G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETESALTTRNPQVFFQVLHDCGALRVLFPEI-----DALFGV-PAPARWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEIRDLAKLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|332998659|gb|EGK18255.1| poly A polymerase head domain protein [Shigella flexneri VA-6] Length = 412 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 153/354 (43%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ LSV+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF +AH G + D L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPAKWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|886309|gb|AAB53125.1| polyA polymerase [Mycobacterium leprae] Length = 411 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 31 IVGGAVRDSLMN-LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+ L D+D AT P++V +I + + T I +GTI + Sbjct: 41 LVGGSVRDALLGRLDSPDLDFATDAGPEQVQQIMRRWADNLWETGIEFGTIGVGKGDYRL 100 Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD----QQGKVIDYVGGLND 144 +ITT R+D R +V F+ D +RRDFT+NA+ G+ D +GGL Sbjct: 101 EITTFRADRYDQVSRNPEVRFSDRLDDDLVRRDFTVNAMAVRIASYGPGEFFDPLGGLAA 160 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 LR R ++ +D LRI+R RF + G + A + L +S+ER Sbjct: 161 LRVRVLETPAAPSVSFGDDPLRIVRAARFVSQLG-FTVAPQVHAAIEEMASQLARISAER 219 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + +E++KLL + I + G+ + + ++ ++ + Sbjct: 220 VSTELDKLLLGNDAAAGIDLLVQTGMGEVVLPEIGDMRM 258 >gi|229815493|ref|ZP_04445824.1| hypothetical protein COLINT_02543 [Collinsella intestinalis DSM 13280] gi|229808930|gb|EEP44701.1| hypothetical protein COLINT_02543 [Collinsella intestinalis DSM 13280] Length = 481 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 3/210 (1%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +LS L ++ IVGG VRD+LM DIDI + + V+ + + Sbjct: 28 LTVLSALEGAGLEAWIVGGWVRDALMGAPGHDIDICCSGSWEESAAALRSRGIAVVESGV 87 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSL-RRDFTINALYADQQG 133 +G I + ++T R D TDGR+ + V D L RRDFT+NA+ Sbjct: 88 KFGGITAVVDGARIEVTAYRLDGFYTDGRHPENVQRATCVEDDLARRDFTVNAMAWHPAR 147 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D G DL R I+ +G+ R ED LR+LR RF + +D A + Sbjct: 148 GLLDCYDGRGDLERRQIRAVGEPRRRFEEDALRMLRAVRFACRL-DFAMDPATAQALAEC 206 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIV 223 L ++ ER+ E+ +L ++ +A++ Sbjct: 207 APLLDQVARERVGIELEGILVTRHGGDALI 236 >gi|91789415|ref|YP_550367.1| poly(A) polymerase [Polaromonas sp. JS666] gi|91698640|gb|ABE45469.1| poly(A) polymerase [Polaromonas sp. JS666] Length = 550 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 128/265 (48%), Gaps = 45/265 (16%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D ++++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F + Sbjct: 50 DDRAMDVVRTLKQAGFEAYVVGGAVRDLLVGLRPKDFDVATDATPEQVKSLFRRAFIIGR 109 Query: 67 RYKVIPTSISYG------TIKIICRKKYFDIT----------TLRSDLI-------TDGR 103 R++++ + YG I++ + + D + T +S+L + GR Sbjct: 110 RFRIV--HVIYGRGREHEVIEVSIFRAHLDSSLAEQVGGNERTSKSELAGMKHAVDSSGR 167 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILE 162 + + D+ RRDFTINA+Y D + + V+DY G+ D + + I+ IG+ R E Sbjct: 168 VLRDNVWGPLEEDAARRDFTINAMYYDPETQIVVDYHNGIRDAKKKIIRMIGNPAVRYRE 227 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS-------ERIWSEINKLLEA 215 D +RI+R RF A + + G K L+ +SS R++ E+ KLL+ Sbjct: 228 DPVRIIRAVRFGA-----KLSALGFKFEDKTSAPLREMSSLLADVPQSRLFDEMLKLLQT 282 Query: 216 KNPLNAIVHMYNGGIFKEIF--LDV 238 + L ++ + G+ I+ LDV Sbjct: 283 GHSLASVEQLKTLGLGTGIYPLLDV 307 >gi|330938472|gb|EGH42075.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. pisi str. 1704B] Length = 409 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAGYGFTVAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|330898889|gb|EGH30308.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 409 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|310764989|gb|ADP09939.1| poly(A) polymerase I [Erwinia sp. Ejp617] Length = 459 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 21/239 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 29 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFRNCRL---- 84 Query: 73 TSISYGTIKIICRKKYFDITTLRS----------DLITDGRYAKVVFTRD-----WKADS 117 + ++ + ++ T R D + R + RD + D+ Sbjct: 85 VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNIFGSIEDDA 144 Query: 118 LRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 145 QRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAAR 204 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I ++ + L + R++ E KLL+A + + + +F+ +F Sbjct: 205 L-DMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLF 262 >gi|319941727|ref|ZP_08016049.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B] gi|319804660|gb|EFW01527.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B] Length = 484 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 14/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTSISYGTIKI 82 ++ IVGGAVRD L+ ++ +D D+AT P+ V R + R++++ + +G I Sbjct: 57 RAYIVGGAVRDLLLGVAPKDFDVATDATPEEVKRAQKRAIIIGRRFRLV--HVIFGQEII 114 Query: 83 ICRK-KYFDITTLRSDLITDGRY-AKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYV 139 C + + +R D + GR + VF W+ D+ RRDFTINALY D + I DY Sbjct: 115 ECSTFRALEGAGVRKD--SSGRVISDNVFGEMWE-DAARRDFTINALYYDPATEEIYDYH 171 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 G DL + ++ IG+ R ED +R++R R A G I+ + K L Sbjct: 172 HGFEDLGKKRLRMIGNPEERYREDPVRMIRAVRISAKLG-FAIEPATERPIARMAKLLSN 230 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + S R+ E KLL + + + + G+ + + Sbjct: 231 VPSARLVDEALKLLTCGHAVECVSRLRKEGLAEAVL 266 >gi|284009161|emb|CBA76198.1| poly(A) polymerase I [Arsenophonus nasoniae] Length = 502 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 109/232 (46%), Gaps = 11/232 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LN ++ +VGG+VRD L+ +D D+ T P+++ ++F R + Sbjct: 79 NALKVLYRLNNAGYEAYLVGGSVRDLLLGKKPKDFDVTTNATPEQIRKLFRNCRLVGRRF 138 Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTI 124 ++ Y I++ R + T D+ + ++ + + D++RRDFTI Sbjct: 139 RLAHIMFGYEIIEVATFRGSHEQTDTNNKDMAHKAQSGMLLRDNIFGNIEDDAIRRDFTI 198 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 N+LY + DYVGG DL N I+ IGD R ED +R+LR RF + ID Sbjct: 199 NSLYYRINDFTLRDYVGGFEDLNNGMIRLIGDPKIRYREDPVRMLRAIRFACKLNMQ-ID 257 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ + LK + S R++ E KLL+ + +F+ +F Sbjct: 258 AETAKPIPQLAYLLKDIPSARLFEESLKLLQTGQGYQTYQQLKRYNLFQSLF 309 >gi|240014103|ref|ZP_04721016.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae DGI18] gi|240112973|ref|ZP_04727463.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae MS11] gi|240115727|ref|ZP_04729789.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae PID18] gi|240121665|ref|ZP_04734627.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae PID24-1] gi|268599053|ref|ZP_06133220.1| multifunctional CCA protein [Neisseria gonorrhoeae MS11] gi|268601406|ref|ZP_06135573.1| multifunctional CCA protein [Neisseria gonorrhoeae PID18] gi|268583184|gb|EEZ47860.1| multifunctional CCA protein [Neisseria gonorrhoeae MS11] gi|268585537|gb|EEZ50213.1| multifunctional CCA protein [Neisseria gonorrhoeae PID18] Length = 410 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G+ K + +V Sbjct: 172 ERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV 207 >gi|260440461|ref|ZP_05794277.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae DGI2] gi|291043762|ref|ZP_06569478.1| multifunctional CCA protein [Neisseria gonorrhoeae DGI2] gi|291012225|gb|EFE04214.1| multifunctional CCA protein [Neisseria gonorrhoeae DGI2] Length = 410 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G+ K + +V Sbjct: 172 ERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV 207 >gi|254493778|ref|ZP_05106949.1| multifunctional CCA protein [Neisseria gonorrhoeae 1291] gi|226512818|gb|EEH62163.1| multifunctional CCA protein [Neisseria gonorrhoeae 1291] Length = 410 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G+ K + +V Sbjct: 172 ERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV 207 >gi|149910512|ref|ZP_01899152.1| polyA polymerase [Moritella sp. PE36] gi|149806472|gb|EDM66444.1| polyA polymerase [Moritella sp. PE36] Length = 488 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 30/251 (11%) Query: 6 QHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 QH H+ + + +L L+K ++ +VGG VRD + +D DIAT P+++ ++ Sbjct: 59 QHPVNHNLISENALKVLYRLHKSGYQAYLVGGGVRDIFIGQEPKDFDIATNAEPEQIKKL 118 Query: 63 FSKTR-----YKVIPTSISYGTIKI-------ICRKKYFDITTLRSD---LITDGRYAKV 107 F R +++ I++ + ++ T+ +SD L+ D Y + Sbjct: 119 FHNCRLVGRRFRLAHILFGRDMIEVATFRGHHVEEQEQNQQTSKQSDGGMLLRDNVYGNI 178 Query: 108 VFTRDWKADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 D+ RRDFT+NALY AD+ V D+ GGL DL+++ ++ IGD R ED Sbjct: 179 ------SEDAERRDFTVNALYYNIADR--AVYDFAGGLADLQSKQLRLIGDPETRYREDP 230 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 +R+LR RF A + I + + L+ + + R++ E KL + L Sbjct: 231 VRMLRAVRFSAKL-DMQISPEAKAPIKQLANLLQSIPAARLFEETLKLFLNGHGLATYKL 289 Query: 225 MYNGGIFKEIF 235 M G+F+ +F Sbjct: 290 MKEHGLFQPLF 300 >gi|309801955|ref|ZP_07696069.1| tRNA adenylyltransferase [Bifidobacterium dentium JCVIHMP022] gi|308221403|gb|EFO77701.1| tRNA adenylyltransferase [Bifidobacterium dentium JCVIHMP022] Length = 476 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 124/255 (48%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ D+D T+ P++ ++R F + + + +GT+ + R+ Sbjct: 30 ALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDM--GRKFGTLGAMRRR 87 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYV 139 + ++TT RSD D R +V + + D RRDFT+NA+ + +D Sbjct: 88 EDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPF 147 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG NDL ++ + +D LR++R RF A G + I+ + A + + I Sbjct: 148 GGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSDMVERIDI 206 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P I + + G+ +F ++ + L ++ + + VFE Sbjct: 207 VSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRHKDVFEHT 265 Query: 260 IDSLLRFIVLISWQD 274 + + R + L + D Sbjct: 266 MIVVDRAVALETGPD 280 >gi|171741747|ref|ZP_02917554.1| hypothetical protein BIFDEN_00838 [Bifidobacterium dentium ATCC 27678] gi|171277361|gb|EDT45022.1| hypothetical protein BIFDEN_00838 [Bifidobacterium dentium ATCC 27678] Length = 456 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 124/255 (48%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ D+D T+ P++ ++R F + + + +GT+ + R+ Sbjct: 10 ALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDM--GRKFGTLGAMRRR 67 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYV 139 + ++TT RSD D R +V + + D RRDFT+NA+ + +D Sbjct: 68 EDGIEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPF 127 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG NDL ++ + +D LR++R RF A G + I+ + A + + I Sbjct: 128 GGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSDMVERIDI 186 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL + P I + + G+ +F ++ + L ++ + + VFE Sbjct: 187 VSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRHKDVFEHT 245 Query: 260 IDSLLRFIVLISWQD 274 + + R + L + D Sbjct: 246 MIVVDRAVALETGPD 260 >gi|260913888|ref|ZP_05920362.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] gi|260631975|gb|EEX50152.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] Length = 426 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 46/233 (19%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPD--------RVMRIF-------SKTRYKVIPTS 74 +VGGAVRD L++L V+D D + PD +V R F +K Y + T Sbjct: 11 LVGGAVRDQLLHLPVKDRDWVVVGATPDDLLAQGYQQVGREFPVFLNPKTKEEYALARTE 70 Query: 75 ISYGT--IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 G+ IC ++ TL+ DL LRRD TINA+ D + Sbjct: 71 RKAGSGYTGFIC--EFSPNITLQEDL-------------------LRRDLTINAIAQDVE 109 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLV 188 G + D+ GG+ DL R ++ + A +ED LR+LR RF A Y ++ L+ Sbjct: 110 GNLYDFYGGIEDLNQRILRHVSPA---FVEDPLRVLRVARFAARYHSLGFTIAPETLRLM 166 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + L L++ER+W E K L KNP + G K +F +++ + Sbjct: 167 KQLTKQGELAHLTAERVWLETEKALLEKNPEIYFHTLRQVGALKVLFPELEAL 219 >gi|239998987|ref|ZP_04718911.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae 35/02] gi|240080662|ref|ZP_04725205.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae FA19] gi|240118023|ref|ZP_04732085.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae PID1] gi|240123577|ref|ZP_04736533.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae PID332] gi|268594834|ref|ZP_06129001.1| multifunctional CCA protein [Neisseria gonorrhoeae 35/02] gi|268596785|ref|ZP_06130952.1| multifunctional CCA protein [Neisseria gonorrhoeae FA19] gi|268603735|ref|ZP_06137902.1| multifunctional CCA protein [Neisseria gonorrhoeae PID1] gi|268682206|ref|ZP_06149068.1| multifunctional CCA protein [Neisseria gonorrhoeae PID332] gi|268548223|gb|EEZ43641.1| multifunctional CCA protein [Neisseria gonorrhoeae 35/02] gi|268550573|gb|EEZ45592.1| multifunctional CCA protein [Neisseria gonorrhoeae FA19] gi|268587866|gb|EEZ52542.1| multifunctional CCA protein [Neisseria gonorrhoeae PID1] gi|268622490|gb|EEZ54890.1| multifunctional CCA protein [Neisseria gonorrhoeae PID332] gi|317164280|gb|ADV07821.1| multifunctional tRNA nucleotidyl transferase/2''''3''''-cyclic phosphodiesterase/2''''nucleotidase/phosphatase [Neisseria gonorrhoeae TCDC-NG08107] Length = 410 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G+ K + +V Sbjct: 172 ERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV 207 >gi|227358020|ref|ZP_03842362.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906] gi|227161755|gb|EEI46787.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906] Length = 507 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 19/215 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F +R Sbjct: 80 NALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFRNSRL----V 135 Query: 74 SISYGTIKIICRKKYFDITTLR--------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + I+ + ++ T R SD + + RD + D++RR Sbjct: 136 GRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFGSIEEDAIRR 195 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N+LY V DYVGGL DL++ TI+ IG R ED +R+LR RF + + Sbjct: 196 DFTLNSLYYGVDDFAVRDYVGGLADLKSGTIRLIGSPETRYREDPVRMLRAIRFASKL-D 254 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 I + + L+ + S R++ E KLL+ Sbjct: 255 MRIAPETAEPISQLAPLLRNIPSARLFEESLKLLQ 289 >gi|146076571|ref|XP_001462959.1| tRNA nucleotidyltransferase [Leishmania infantum JPCM5] gi|134067040|emb|CAM65146.1| putative tRNA nucleotidyltransferase [Leishmania infantum JPCM5] Length = 523 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 25/231 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG----TIKII--- 83 + GG VRD L+ L DIDIA + ++V +++G T+ +I Sbjct: 38 VAGGWVRDMLLGLHSNDIDIAIETHAGTKLVTGEAFAHRVSEYQLAHGGRGHTVSVIRSN 97 Query: 84 -CRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 K+ + T LR+D+ T+ V D+ RRDFTINAL+ + Sbjct: 98 PALSKHIETATVRVHEIPVEFCALRTDVYTNESRIPQVRPAAPVEDAQRRDFTINALFYN 157 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G V DY GL DLR R I+ + ++D LR+LR RF G N D + Sbjct: 158 LHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDPLRLLRGVRFVGQLGALNFSLDESIT 217 Query: 190 SIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 S L++L S ER+ E K++ A +P I +++ I + + L Sbjct: 218 SCMDDALLQVLQQKVSRERVGKEFVKMMAAAHPERCIALLHDMHILQHVLL 268 >gi|87119772|ref|ZP_01075669.1| tRNA nucleotidyltransferase [Marinomonas sp. MED121] gi|86165248|gb|EAQ66516.1| tRNA nucleotidyltransferase [Marinomonas sp. MED121] Length = 377 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L ++D D + T P+ ++ + K+ P + T +++Y Sbjct: 12 LVGGAVRDELLKLPIKDRDWVVTGATPNDLLSYNFQQVGKLFPVFLHPKT-----KEEY- 65 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R+++ Y + F+ + + D RRD TINA+ D G +ID G DL Sbjct: 66 --ALARTEVKKGQGYTGFICDFSPNISLEEDLARRDLTINAIAKDNDGNLIDPYQGQQDL 123 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEK-NIDSDGLVASIKAKKGLKILS 201 +NR + + DA +ED LR++R RF F +G K ++ L+ I L+ L+ Sbjct: 124 KNRIFRHVSDA---FIEDPLRVIRVARFSARFTQFGFKIAPETLALMTKISQSGELESLN 180 Query: 202 SERIWSEINKLLEAKNP 218 ERIW E+ K L NP Sbjct: 181 QERIWRELEKSLSYPNP 197 >gi|241760511|ref|ZP_04758604.1| poly(A) polymerase [Neisseria flavescens SK114] gi|241319015|gb|EER55517.1| poly(A) polymerase [Neisseria flavescens SK114] Length = 450 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 14/203 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIP 72 I L++ ++ +VGGAVRD L+ + +D DIAT P+++ ++F ++ R++++ Sbjct: 43 IAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKVFRRSRIIGRRFQIVH 102 Query: 73 TSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I TI++ + + + ++ D Y + + D++RRDFT NALY D Sbjct: 103 VMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSI------EEDAMRRDFTCNALYYDP 156 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++ D+ G+ D+ ++ + IGD R ED +RILR R G + + L + Sbjct: 157 IKEEIWDFHQGVADVADKKLVMIGDPAERYQEDPVRILRAVRLSGKLGFEVEEQTALPIA 216 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI K+L Sbjct: 217 EYAGR-LKNEPVARLFDEILKIL 238 >gi|332199601|gb|EGJ13676.1| poly A polymerase head domain protein [Streptococcus pneumoniae GA41317] Length = 325 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 31/334 (9%) Query: 89 FDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 +++TT R+ D+ D R V F R + D RRDFT+NA D+ G+++D GL DL Sbjct: 9 YEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDLFHGLEDLE 68 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + ++ +G A R ED LRI+R FRF A G ++ + A L+ +S ER + Sbjct: 69 KQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTLTPLLEKISVERTF 127 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV--IEAEQVFEWKIDSLL 264 E +KLL A + M + +L S D+L+++ +E + FE + Sbjct: 128 VEFDKLLLAPFWRRGLASMIESQAYD--YLPDMASSQDKLNRLFDLETDFTFESSEQAWA 185 Query: 265 RFIVLISWQDKKSIL-SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 + + ++ +S L S ++++ LI L++ E +L K Sbjct: 186 ALLWALEIENAQSFLKSWKTSRQFAKQVQDLLI----------ILALRENGEL-----SK 230 Query: 324 VMIAKLKIFLALHYNNLTH------QDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIP 376 + I L L NL + S IH KK + + GD ++K YG Sbjct: 231 RDCYRFDIDLLLQAENLRQARGKEVNPQAITEKYQSLTIHDKKEI-QINGDILIKEYGYQ 289 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 PG +G IL + ++ + ++E +H LR+ Sbjct: 290 PGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323 >gi|320326002|gb|EFW82060.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. glycinea str. B076] Length = 409 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|153825676|ref|ZP_01978343.1| polyA polymerase [Vibrio cholerae MZO-2] gi|149740613|gb|EDM54722.1| polyA polymerase [Vibrio cholerae MZO-2] Length = 457 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 26/266 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++ + G + + + + L+ D Y + D+ Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTI------DEDAE 149 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 150 RRDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL 209 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F Sbjct: 210 -DFDIEEDTAAPIEQLALLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPT 268 Query: 238 VQE-ISLDQLSQVIEAEQVFEWKIDS 262 + E + D S+ EQ+ + +D+ Sbjct: 269 IAEHFTADHSSKT---EQMLDLVLDA 291 >gi|330955101|gb|EGH55361.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae Cit 7] Length = 409 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|300076352|gb|ADJ65751.1| tRNA nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 126/268 (47%), Gaps = 31/268 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ VGGAVRD L+ L V+D D + P++++ + + K P + T ++ Sbjct: 2 KTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPHT-----QE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 +Y R++ T Y F + D RRD TINA+ D+ G ++D G Sbjct: 57 EY---ALARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKIL 200 D+ R + + DA +ED +RILR RF A + + + +++ L+ + + + L Sbjct: 114 ADIAARVFRHVSDA---FIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+++ L + P + G + I + LD L V + E+ + +I Sbjct: 171 VPERVWQELSRGLMEQKPSRMFEVLRACGALQRILPE-----LDALWGVPQPEK-WHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLP 288 D+ + ++++ W + A+ F+LP Sbjct: 225 DTGVHVMLVVDW-------AAAQGFTLP 245 >gi|259907516|ref|YP_002647872.1| poly(A) polymerase I [Erwinia pyrifoliae Ep1/96] gi|224963138|emb|CAX54622.1| Poly(A) polymerase [Erwinia pyrifoliae Ep1/96] Length = 459 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 21/239 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 29 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFRNCRL---- 84 Query: 73 TSISYGTIKIICRKKYFDITTLRS----------DLITDGRYAKVVFTRD-----WKADS 117 + ++ + ++ T R D + R + RD + D+ Sbjct: 85 VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNIFGSIEDDA 144 Query: 118 LRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 145 QRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAAK 204 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I ++ + L + R++ E KLL+A + + + +F+ +F Sbjct: 205 L-DMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLF 262 >gi|88810481|ref|ZP_01125738.1| polyA polymerase [Nitrococcus mobilis Nb-231] gi|88792111|gb|EAR23221.1| polyA polymerase [Nitrococcus mobilis Nb-231] Length = 475 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 13/238 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + + +L LNK + +VGG VRD + +D D+AT P++V ++F R + Sbjct: 69 NALKVLYRLNKAGYAAYLVGGGVRDLSLGREPKDFDVATDARPEQVKQLFRNCRLIGRRF 128 Query: 69 KVIPTSISYGTIKIICRKKYFDITTL--RSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ I++ + + ++ ++ +GR + + D+LRRDFT+NA Sbjct: 129 RLAHVYFGSEIIEVATFRALQEAGEADEQARVLENGRLLRDNVFGTIEEDALRRDFTVNA 188 Query: 127 LY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 LY AD ++DYVGG+ DLR ++ IG A R ED +R+LR RF G + + Sbjct: 189 LYYHIADF--TLVDYVGGMADLRCGVLRLIGAAEVRYREDPVRMLRAVRFAVKLGFR-MH 245 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + A + L + R++ E KL L A + + G+F +F + + Sbjct: 246 PETAEAIPRMAHLLGHIPPARLFDETLKLFVTGMGLEAFECLRHYGLFGYLFPATEAV 303 >gi|330970849|gb|EGH70915.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 408 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|322496388|emb|CBZ31459.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 523 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 25/231 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG----TIKII--- 83 + GG VRD L+ L DIDIA + ++V +++G T+ +I Sbjct: 38 VAGGWVRDMLLGLHSNDIDIAIETHAGTKLVTGEAFAHRVSEYQLAHGGRGHTVSVIRSN 97 Query: 84 -CRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 K+ + T LR+D+ T+ V D+ RRDFTINAL+ + Sbjct: 98 PALSKHIETATVRVHEIPVEFCALRTDVYTNESRIPQVRPAAPVEDAQRRDFTINALFYN 157 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G V DY GL DLR R I+ + ++D LR+LR RF G N D + Sbjct: 158 LHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDPLRLLRGVRFVGQLGALNFSLDESIT 217 Query: 190 SIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 S L++L S ER+ E K++ A +P I +++ I + + L Sbjct: 218 SCMDDALLQVLQQKVSRERVGKEFVKMMAAAHPERCIALLHDMHILQHVLL 268 >gi|37524869|ref|NP_928213.1| poly(A) polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784294|emb|CAE13169.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 521 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 18/175 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D DIAT P++V ++F R Sbjct: 102 ENALKVLYRLNKSGFEAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRL---- 157 Query: 73 TSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKV-VFTRD-----WKADSLR 119 + I+ ++ ++ T R SD + A+ + RD + D++R Sbjct: 158 VGRRFRLAHIMFGQEVIEVATFRGPHEQTGSDDKNQSQQAQSGMLLRDNIFGSIEEDAMR 217 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 RDFTIN+LY + DY GGL+DL I+ IGD R ED +R+LR RF Sbjct: 218 RDFTINSLYYGINDFSLRDYAGGLHDLETGVIRLIGDPETRYREDPVRMLRAIRF 272 >gi|301021239|ref|ZP_07185271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 196-1] gi|299881597|gb|EFI89808.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 196-1] Length = 412 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ I A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHISPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPAKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|319638294|ref|ZP_07993057.1| phosphatase [Neisseria mucosa C102] gi|317400567|gb|EFV81225.1| phosphatase [Neisseria mucosa C102] Length = 420 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 34/276 (12%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSI 75 +N K+ +VGGAVRD L+ L V+D D A T+L + + P S Sbjct: 1 MNTQTIKTYLVGGAVRDHLLGLPVKDRDWVIVGADAQTMLAQGYQPVGKDFPVFLHPDS- 59 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ 131 + + R++ T YA F D + D +RRD TINA+ D Sbjct: 60 ------------HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDS 107 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVAS 190 G +ID GG DL + ++ + A ED +RILR RF A YG + D L+ Sbjct: 108 DGTIIDPFGGQQDLADGILRHVSPA---FAEDPVRILRIARFAARYGFQIADETMSLMRQ 164 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L +ER+W E+ K L KNP I + G K + + LD L V Sbjct: 165 MVENGEADALVAERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPE-----LDALFGVP 219 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 + + +IDS + ++++ + + LS+A++++ Sbjct: 220 QRAD-YHPEIDSGIHTLMVVQRAAEMN-LSLAERYA 253 >gi|167563975|ref|ZP_02356891.1| polyA polymerase [Burkholderia oklahomensis EO147] gi|167571119|ref|ZP_02363993.1| polyA polymerase [Burkholderia oklahomensis C6786] Length = 521 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 25/190 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P +V +F + R + Sbjct: 78 NAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTQVQHLFRRARLIGRRF 137 Query: 69 KVIPTSISYGTIKIICRKKYFDITT-----------LRSDLI--------TDGRYAKVVF 109 +++ I++ + D ++ D + GR + Sbjct: 138 QIVHVQFGQELIEVSTFRALVDAPQEPPAETAPAKRMKRDELDRRTHAVDASGRVLRDNV 197 Query: 110 TRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+L Sbjct: 198 WGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADMRARLLRMIGDPVTRFREDPVRML 257 Query: 169 RFFRFFAHYG 178 R RF A G Sbjct: 258 RVVRFAAKLG 267 >gi|307132391|ref|YP_003884407.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Dickeya dadantii 3937] gi|306529920|gb|ADM99850.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Dickeya dadantii 3937] Length = 415 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 146/342 (42%), Gaps = 34/342 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V + D + P+ +++ + + P + T +++Y Sbjct: 5 LVGGAVRDGLLGRPVTERDWVVVGATPEMLLQQGYQQVGRDFPVFLHPET-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + + D RRD TINA+ D+ G++ID G DL+NR Sbjct: 60 LARTERKSGNGYTGFTCQATPDITLEEDLQRRDLTINAIAQDEDGQLIDPYDGQRDLQNR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF A Y ++ L+ ++ L L+ ER Sbjct: 120 LLRHVSDA---FSEDPLRVLRVARFAARYAHLGFLIAEETLNLMQAMTRNGELDFLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E K L ++P + + G +F ++ D+L V Q W + Sbjct: 177 VWKETEKALATQDPQVYFQVLRDCGALAVLFPEI-----DRLYGVPAPAQ---WHPEIDT 228 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 V++S L+MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 229 GIHVMMS-------LAMAARLSPALDVRFATL----CHDLGKGLTPPELWPRHHGHGPAG 277 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + L N C + + D++H + L P T Sbjct: 278 VPLVEALCQRLRVPNALRDLACLVAEY-HDVVHTVQMLQPKT 318 >gi|240016538|ref|ZP_04723078.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae FA6140] Length = 410 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G+ K + +V Sbjct: 172 ERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV 207 >gi|261867904|ref|YP_003255826.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413236|gb|ACX82607.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 592 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 16/232 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + ++ L + ++ +VGG +RD L+ +D D+AT P+++ +F + V Sbjct: 14 LTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQRQCRLV---GR 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLIT--DGRYAKV----VFTRD-----WKADSLRRDFTI 124 + ++ ++ ++ T R+ + + + AK + RD + D+ RRDF++ Sbjct: 71 RFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSV 130 Query: 125 NALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY + Q + DY G++DL+N ++ IGD R ED +R+LR RF A E +D Sbjct: 131 NALYYNPQDNTLKDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL-EMFLD 189 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + LK + R++ E KLL+ + + + G+F+++F Sbjct: 190 KPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQYGLFEQLF 241 >gi|92115178|ref|YP_575106.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043] gi|91798268|gb|ABE60407.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043] Length = 473 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 32/255 (12%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V + F ++ L + L N G + + +VGG VRDSL+ +D DIAT P+ + +F Sbjct: 43 VSRRLFSENALKVLYRLHNAGHE-AYLVGGCVRDSLLGKVPKDFDIATDATPEEIRTLFR 101 Query: 65 KT-----RYKVIPTSISYGTIKIICRK-----KYFDITTLRSD---LITDGRYAKVVFTR 111 + R++++ I++ + + D + +SD L+ D + + Sbjct: 102 NSRIIGRRFRIVHVRFGREIIEVTTFRGRPGDDHDDTLSQQSDDGLLLRDNVWGTI---- 157 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+LRRDFT+NALY + + D+ G++D+ RT++ IGD R ED +R+LR Sbjct: 158 --EEDALRRDFTVNALYYNIADFSIHDWANGVSDIDERTLRLIGDPEVRYREDPVRMLRA 215 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKG-----LKILSSERIWSEINKLLEAKNPLNAIVHM 225 RF A +D D + +A G L + R++ E+ KL + + L + Sbjct: 216 VRFAA-----KLDFD-IEPRTEAPIGELAPLLLQIPPARLFEEVLKLFLSGHALRTFELL 269 Query: 226 YNGGIFKEIFLDVQE 240 G+F +F + E Sbjct: 270 REYGLFAMLFPETDE 284 >gi|315633917|ref|ZP_07889206.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] gi|315477167|gb|EFU67910.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] Length = 422 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 26/250 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P ++ + K P + +++Y Sbjct: 9 LVGGAVRDQLLNLPVKDRDWVIVGATPQDLLNQGYQQVGKDFPVFLHPQN-----KEEY- 62 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ Y + F+ D + D +RRD TINA+ D G + D G+ DL Sbjct: 63 --ALARTERKAGNGYTGFICDFSADITLEQDLVRRDLTINAIAQDLAGNLYDPYHGVEDL 120 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDG--LVASIKAKKGLKILS 201 R ++ + A ED LR+LR RF A HY NI + L+ ++ A+ L+ L+ Sbjct: 121 EKRVLRHVSPA---FSEDPLRVLRVARFAARYHYLGFNIADETLQLMTALSAQGELQHLT 177 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W+E K L KNP + G K +F + LD L V + + +ID Sbjct: 178 AERVWAETEKALNEKNPEIYFETLRQVGALKVLFPE-----LDALYGVPNPAK-YHPEID 231 Query: 262 SLLRFIVLIS 271 S + ++++ Sbjct: 232 SFVHTMMVLQ 241 >gi|116195956|ref|XP_001223790.1| hypothetical protein CHGG_04576 [Chaetomium globosum CBS 148.51] gi|88180489|gb|EAQ87957.1| hypothetical protein CHGG_04576 [Chaetomium globosum CBS 148.51] Length = 528 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 30/242 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIATT-------------------------ILPDRVMRIFSKT 66 GG VRD L+ + DID A + +LPD V R+ + Sbjct: 50 AGGWVRDKLLGIPSHDIDTALSAMTGEEFVDRLRDYCDEPAHRERHALLPDDVGRLHTVP 109 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 R ++ TIK+ D LR + T+ VV + D+LRRD ++NA Sbjct: 110 RNPDKSKHLATSTIKLCGLD--VDFVNLRRETYTESSRNPVVEFGTAEEDALRRDASVNA 167 Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDS 184 L+ + G V D+VGGL DL I+ + L+D LR+LR RF + G K + + Sbjct: 168 LFYNLGTGMVEDFVGGLADLEAGLIRTPLEPLQTFLDDPLRVLRLVRFASRLGFKIDPAA 227 Query: 185 DGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + ++ + LK+ +S ERI E+ K+++ K P+ ++ + G++ +F D + + Sbjct: 228 EQVMGDERVLGNLKVKISRERIGVELEKMMKGKKPVESLRLIDRLGLYHAVFTDPERAGM 287 Query: 244 DQ 245 + Sbjct: 288 PK 289 >gi|309811302|ref|ZP_07705089.1| tRNA adenylyltransferase [Dermacoccus sp. Ellin185] gi|308434609|gb|EFP58454.1| tRNA adenylyltransferase [Dermacoccus sp. Ellin185] Length = 509 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 3/217 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ ++ + D+D T+ PD RI + ++GTI + Sbjct: 57 ALVGGPVRDAFLSRTSPDLDFTTSARPDDTERIVAGWADATWDLGRAFGTIGVRKGGVQV 116 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 +ITT R+D + R V F D +RRDFT+NA+ +D GGL DL Sbjct: 117 EITTYRADAYDRETRKPVVEFGDSLDDDLVRRDFTVNAMALRLPDLTFVDPYGGLADLAA 176 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ D +D LR++R RF + G ++ + A + ++++S+ER+ Sbjct: 177 GVLRTPTDPEVSFGDDPLRMMRAARFSSQLG-FDVAPEAFRAMREMAASIEMISAERVRD 235 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KLL + P + + GI + + ++ ++L+ Sbjct: 236 ELVKLLMSPTPRRGLELLVESGIAEHVLPELPALALE 272 >gi|110643300|ref|YP_671030.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 536] gi|123048854|sp|Q0TD50|CCA_ECOL5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|110344892|gb|ABG71129.1| tRNA nucleotidyltransferase [Escherichia coli 536] Length = 412 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPSEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|320201966|gb|EFW76541.1| tRNA nucleotidyltransferase [Escherichia coli EC4100B] Length = 412 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 153/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFLVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|320354859|ref|YP_004196198.1| poly(A) polymerase [Desulfobulbus propionicus DSM 2032] gi|320123361|gb|ADW18907.1| poly(A) polymerase [Desulfobulbus propionicus DSM 2032] Length = 464 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 12/211 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L K +VGG VRD + + +D DI+T P ++ ++F +R Sbjct: 36 DREALKVLYRLRDAGFKGYLVGGGVRDLYLGRTPKDFDISTDARPGQLRQLFRNSRT--- 92 Query: 72 PTSISYGTIKIICR-KKYFDITTLRS--DLITDGRYAKVVFTRDW---KADSLRRDFTIN 125 + +++ R K +++TLRS + DG A + + + D+ RRD TIN Sbjct: 93 -IGRRFRLVQVFFRGNKIIEVSTLRSSSEFDIDGDDAVLPSNNTFGTLEEDAFRRDLTIN 151 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 AL+ + + +IDY GG+ DL + I+ +GD R D +R++R R A G +I+ Sbjct: 152 ALFYEIENHTIIDYTGGVRDLDDGIIRVVGDPDRRFTRDPVRMMRVVRHAARTG-FSIED 210 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEA 215 D A + ++ L + RI E+ K L++ Sbjct: 211 DTFAALRRHREKLLLCPPSRIRDEVLKDLQS 241 >gi|307546716|ref|YP_003899195.1| poly(A) polymerase [Halomonas elongata DSM 2581] gi|307218740|emb|CBV44010.1| poly(A) polymerase [Halomonas elongata DSM 2581] Length = 488 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 31/261 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V + F D+ L + L N G + + +VGG +RD+L+ +D D+AT PD V +F Sbjct: 63 VSRQHFSDAALKVLYRLHNAGFE-AFLVGGCIRDALLGRMPKDFDVATDATPDEVRDLFR 121 Query: 65 KT-----RYKVIPTSISYGTIKIIC-RKK----YFDITTLRSD---LITDGRYAKVVFTR 111 + R++++ I++ R K + D +SD L+ D + + Sbjct: 122 NSRIIGRRFRIVHVRFGREVIEVTTFRGKPNDDHGDHIAQQSDDGMLLRDNVWGNI---- 177 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+LRRDFTINALY + + D+ G D+ RT++ IGD R ED +R+LR Sbjct: 178 --EEDALRRDFTINALYYNIADFSIHDFADGARDIDARTLRLIGDPATRYREDPVRMLRA 235 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMY 226 RF A +D A+ + + L L R++ E+ KL A + + + Sbjct: 236 IRFAA-----KLDFSLARATEEPIEELAPLLLQVPPARLFDEVLKLFMAGHGVETFQLLR 290 Query: 227 NGGIFKEIFLDVQEISLDQLS 247 G+F +F + E + D+L Sbjct: 291 EYGLFAMLFPEADE-AFDELP 310 >gi|164423663|ref|XP_962692.2| hypothetical protein NCU08022 [Neurospora crassa OR74A] gi|157070187|gb|EAA33456.2| hypothetical protein NCU08022 [Neurospora crassa OR74A] Length = 541 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 33/236 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRI----------FSKTRYKVIPTSISYGTIK 81 GG VRD L+ DID+A + + + R+ + P + G + Sbjct: 57 AGGWVRDKLLGTESNDIDVAINNMTGEAFALRLRDYCDADPAHRERHSIGPADV--GNLH 114 Query: 82 IICRK----KYFDITTLR-----SDLIT--------DGRYAKVVFTRDWKADSLRRDFTI 124 I R K+ + TT++ DL+ D R+ +V F + D+LRRD T+ Sbjct: 115 KIARNPDKSKHLETTTIKLFGLDVDLVNLRKETYTEDSRHPQVEFGTA-EEDALRRDATV 173 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNI 182 NAL+ + GKV D+ GG+ D+ + I+ + ++D LR+LR RF G + Sbjct: 174 NALFYNLHTGKVEDFTGGMKDMERKLIRTPLEPLQTFMDDPLRVLRLIRFACRLGFTIDE 233 Query: 183 DSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++ ++ + + LK+ +S ER+ E+ K+L+ +P +++ ++ N ++ +F D Sbjct: 234 ETKAVMGDERVLEALKLKISRERVGVELEKMLKGPDPFSSLTYINNLSLYHTLFTD 289 >gi|83648899|ref|YP_437334.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis KCTC 2396] gi|83636942|gb|ABC32909.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis KCTC 2396] Length = 457 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 9/169 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + +L LN + +VGG VRD L+ +D D+AT+ P++V F+ R +++ Sbjct: 43 LKVLYRLNSANYDAFLVGGGVRDLLLGEQPKDFDVATSATPEQVREQFNNCRLIGRRFRL 102 Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITD--GRYAKVVFTRDWKADSLRRDFTINAL 127 I++ R + + D +T G+ + + + D+LRRDFT+NAL Sbjct: 103 AHVRFGREIIEVATFRAGHQNAGEDDGDAVTSDSGQILRDNVYGNQEEDALRRDFTVNAL 162 Query: 128 Y-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 Y + + DY GG+ D+ +R ++ IGD R ED +R+LR RF A Sbjct: 163 YYCVRDFSIYDYAGGIEDIEHRVLRLIGDPETRYREDPVRMLRAARFAA 211 >gi|254507504|ref|ZP_05119638.1| multifunctional CCA protein [Vibrio parahaemolyticus 16] gi|219549574|gb|EED26565.1| multifunctional CCA protein [Vibrio parahaemolyticus 16] Length = 408 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 100/199 (50%), Gaps = 24/199 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N+ V D D + P++++ T K P + T ++++ Sbjct: 10 LVGGAVRDQLLNIDVYDRDWVVVGSTPEQMLEQGFTTVGKEFPVFLHPKT-----KEEHA 64 Query: 90 DITTLRSDLITDGRYA-KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R I G + F +D + D LRRD TINA+ D GK+ID G DL+ Sbjct: 65 LARTERK--IGAGYTGFECYFAQDVTLEEDLLRRDLTINAMAQDPSGKIIDPYNGQQDLQ 122 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG----EKNIDSDGLVASIKAKKGLKI 199 +R ++ + +A ED LR+LR RF AH G E+ I+ L+ I L+ Sbjct: 123 DRLLRHVSEA---FTEDPLRVLRVARFAAKLAHLGFTVAEETIE---LMRKIAQSGELEH 176 Query: 200 LSSERIWSEINKLLEAKNP 218 L+ ER+W E +K L ++P Sbjct: 177 LTPERVWQEWHKSLSTQSP 195 >gi|283477356|emb|CAY73272.1| methionine gamma-lyase [Erwinia pyrifoliae DSM 12163] Length = 483 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 21/239 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLRS----------DLITDGRYAKVVFTRD-----WKADS 117 + ++ + ++ T R D + R + RD + D+ Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNIFGSIEDDA 168 Query: 118 LRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 169 QRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAAK 228 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I ++ + L + R++ E KLL+A + + + +F+ +F Sbjct: 229 L-DMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLF 286 >gi|271501655|ref|YP_003334681.1| poly(A) polymerase [Dickeya dadantii Ech586] gi|270345210|gb|ACZ77975.1| poly(A) polymerase [Dickeya dadantii Ech586] Length = 467 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 16/216 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+K ++ +VGG VRD L+ +D DI T P++V ++F R Sbjct: 46 ENALKVLYRLSKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRLVGRR 105 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + + + + RD + D+ RRDF Sbjct: 106 FRLAHVMFGPEVIEVATFRGHHEQHQEQETKNAAQQGHNGMLLRDNIFGTIEEDAQRRDF 165 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 TIN+LY AD V DY GLNDLR I+ IGD R ED +R+LR RF A G Sbjct: 166 TINSLYYSIAD--FTVRDYTNGLNDLRQGLIRLIGDPETRYREDPVRMLRAVRFAAKLGM 223 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I ++ + L + R++ E KLL+A Sbjct: 224 R-ISAETAEPIPRLASLLHDIPPARLFEESLKLLQA 258 >gi|238061892|ref|ZP_04606601.1| HDIG domain-containing protein [Micromonospora sp. ATCC 39149] gi|237883703|gb|EEP72531.1| HDIG domain-containing protein [Micromonospora sp. ATCC 39149] Length = 486 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 4/229 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PD+ +RI + T +GTI + Sbjct: 49 LVGGSVRDALLGRLGDDLDFCTDAHPDQTLRIVKGWAESIWETGREFGTIGCQRDGLRLE 108 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 ITT R++ R V + D RRDFTINA+ + + D GGL+DL R Sbjct: 109 ITTFRAEAYDQVSRNPIVEYGTSLTEDLRRRDFTINAMAVSLPEHRFTDPHGGLDDLAAR 168 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ G +D LR+LR RF A + D A L +++ERI E Sbjct: 169 VIRTPGTPAESFGDDPLRMLRAARFTAQL-RFAVHPDVRAAMAAMAADLDRITAERIRDE 227 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 KLL +P+ + + + G+ + ++ + L ++ + + + V+E Sbjct: 228 FTKLLCGADPITGLRLLVDTGLAERFLPELTGLKL-EIDEHAQHKDVYE 275 >gi|301021846|ref|ZP_07185809.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 69-1] gi|331664669|ref|ZP_08365575.1| multifunctional CCA protein [Escherichia coli TA143] gi|300397862|gb|EFJ81400.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 69-1] gi|331058600|gb|EGI30581.1| multifunctional CCA protein [Escherichia coli TA143] Length = 412 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|115380801|ref|ZP_01467667.1| polynucleotide adenyltransferase [Stigmatella aurantiaca DW4/3-1] gi|115362192|gb|EAU61561.1| polynucleotide adenyltransferase [Stigmatella aurantiaca DW4/3-1] Length = 398 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 3/113 (2%) Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINA 126 +VIPT I +GT+ ++ + ++TT RS D + R + V F RD D RRDFTINA Sbjct: 40 EVIPTGIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLSRRDFTINA 99 Query: 127 LYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + D G+V +D GG+ DL+ I+ + R ED LR +R RF A G Sbjct: 100 MAYDPVGQVLVDPFGGMEDLQAHLIRCVRSPLERFSEDGLRPMRAVRFAAVLG 152 >gi|16130952|ref|NP_417528.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli str. K-12 substr. MG1655] gi|89109826|ref|AP_003606.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli str. K-12 substr. W3110] gi|157162529|ref|YP_001459847.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli HS] gi|170018692|ref|YP_001723646.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli ATCC 8739] gi|170082599|ref|YP_001731919.1| fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli str. K-12 substr. DH10B] gi|188492602|ref|ZP_02999872.1| multifunctional CCA protein [Escherichia coli 53638] gi|194436695|ref|ZP_03068795.1| multifunctional CCA protein [Escherichia coli 101-1] gi|218706681|ref|YP_002414200.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli UMN026] gi|238902167|ref|YP_002927963.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli BW2952] gi|253772108|ref|YP_003034939.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038224|ref|ZP_04872282.1| multifunctional CCA protein [Escherichia sp. 1_1_43] gi|254163003|ref|YP_003046111.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli B str. REL606] gi|293406669|ref|ZP_06650595.1| multifunctional CCA protein [Escherichia coli FVEC1412] gi|297520636|ref|ZP_06939022.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli OP50] gi|300901437|ref|ZP_07119522.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 198-1] gi|300905805|ref|ZP_07123539.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 84-1] gi|300917407|ref|ZP_07134073.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 115-1] gi|300931940|ref|ZP_07147237.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 187-1] gi|300950736|ref|ZP_07164624.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 116-1] gi|300958441|ref|ZP_07170580.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 175-1] gi|301301904|ref|ZP_07208038.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 124-1] gi|301644751|ref|ZP_07244726.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 146-1] gi|307139744|ref|ZP_07499100.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli H736] gi|312972681|ref|ZP_07786854.1| poly A polymerase head domain protein [Escherichia coli 1827-70] gi|331643754|ref|ZP_08344885.1| multifunctional CCA protein [Escherichia coli H736] gi|115939|sp|P06961|CCA_ECOLI RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|167006456|sp|A8A4L0|CCA_ECOHS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|189081873|sp|B1IRR0|CCA_ECOLC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702051|sp|B1XG61|CCA_ECODH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702052|sp|B7ND45|CCA_ECOLU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|259585841|sp|C4ZQX3|CCA_ECOBW RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|145468|gb|AAA23541.1| tRNA nucleotidyltransferase [Escherichia coli] gi|882578|gb|AAA89136.1| CG Site No. 933 [Escherichia coli str. K-12 substr. MG1655] gi|1789436|gb|AAC76092.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli str. K-12 substr. MG1655] gi|85675857|dbj|BAE77107.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli str. K12 substr. W3110] gi|157068209|gb|ABV07464.1| multifunctional CCA protein [Escherichia coli HS] gi|169753620|gb|ACA76319.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli ATCC 8739] gi|169890434|gb|ACB04141.1| fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli str. K-12 substr. DH10B] gi|188487801|gb|EDU62904.1| multifunctional CCA protein [Escherichia coli 53638] gi|194424177|gb|EDX40164.1| multifunctional CCA protein [Escherichia coli 101-1] gi|218433778|emb|CAR14695.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli UMN026] gi|226839848|gb|EEH71869.1| multifunctional CCA protein [Escherichia sp. 1_1_43] gi|238861261|gb|ACR63259.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli BW2952] gi|242378606|emb|CAQ33393.1| fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase [Escherichia coli BL21(DE3)] gi|253323152|gb|ACT27754.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974904|gb|ACT40575.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli B str. REL606] gi|253979060|gb|ACT44730.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli BL21(DE3)] gi|260447908|gb|ACX38330.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli DH1] gi|291426675|gb|EFE99707.1| multifunctional CCA protein [Escherichia coli FVEC1412] gi|300314882|gb|EFJ64666.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 175-1] gi|300355139|gb|EFJ71009.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 198-1] gi|300402404|gb|EFJ85942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 84-1] gi|300415364|gb|EFJ98674.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 115-1] gi|300449973|gb|EFK13593.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 116-1] gi|300460363|gb|EFK23856.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 187-1] gi|300842885|gb|EFK70645.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 124-1] gi|301076905|gb|EFK91711.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 146-1] gi|309703487|emb|CBJ02827.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Escherichia coli ETEC H10407] gi|310332623|gb|EFP99836.1| poly A polymerase head domain protein [Escherichia coli 1827-70] gi|315137650|dbj|BAJ44809.1| multifunctional CCA protein [Escherichia coli DH1] gi|315256967|gb|EFU36935.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 85-1] gi|315617128|gb|EFU97737.1| poly A polymerase head domain protein [Escherichia coli 3431] gi|323935942|gb|EGB32237.1| poly A polymerase head domain-containing protein [Escherichia coli E1520] gi|323941846|gb|EGB38025.1| poly A polymerase head domain-containing protein [Escherichia coli E482] gi|323960974|gb|EGB56592.1| poly A polymerase head domain-containing protein [Escherichia coli H489] gi|323971821|gb|EGB67046.1| poly A polymerase head domain-containing protein [Escherichia coli TA007] gi|331037225|gb|EGI09449.1| multifunctional CCA protein [Escherichia coli H736] gi|332345010|gb|AEE58344.1| poly A polymerase head protein [Escherichia coli UMNK88] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPAKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|315446809|ref|YP_004079688.1| tRNA adenylyltransferase [Mycobacterium sp. Spyr1] gi|315265112|gb|ADU01854.1| tRNA adenylyltransferase [Mycobacterium sp. Spyr1] Length = 486 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 23/228 (10%) Query: 31 IVGGAVRDSLM---NLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGG VRD+L+ + D+D T P+++ R+ + T I +GT+ + + Sbjct: 41 LVGGPVRDALLGRFDPDKNDLDFTTDARPEQMQRVLRGWGDALWDTGIEFGTLGVGKGED 100 Query: 88 YFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 +ITT R+D R +V F + D +RRDFT+NA+ AD + +D + GL Sbjct: 101 RLEITTFRADTYDKVSRNPEVRFGDNLADDLVRRDFTVNAMAVRVTADGPTEFLDPLDGL 160 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 + LR+ + +D LR+LR RF + G + + ++ L+ +SS Sbjct: 161 SALRDGVLDTPAAPEVSFGDDPLRMLRAARFVSQL--------GFTVAPRVRRALEEMSS 212 Query: 203 -------ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ER+ +E++KLL +P+ + M + G+ + + +V + + Sbjct: 213 QLSRITAERVAAELDKLLLGADPVAGLDLMVDTGLGEVVLPEVGAMRM 260 >gi|169837879|ref|ZP_02871067.1| Poly(A) polymerase [candidate division TM7 single-cell isolate TM7a] Length = 153 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 6/131 (4%) Query: 57 DRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV-FTRDWKA 115 D + +IFS Y ++G + I + F+I R+D+ +DGR V F D + Sbjct: 4 DDIKKIFSD--YPTKEVGKAFGILIIHYEDENFEIAKFRTDIGSDGRRPNSVEFVNDIED 61 Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D LRRDFT NA+ +++ +ID G D++N+ I+F+G R+ ED LR++R FRF + Sbjct: 62 DLLRRDFTFNAMAFNEKDGLIDIFNGQEDIKNKIIRFVGKPKKRLQEDGLRLMRAFRFMS 121 Query: 176 HYG---EKNID 183 G EKN + Sbjct: 122 QLGFDFEKNTE 132 >gi|260904997|ref|ZP_05913319.1| tRNA nucleotidyltransferase [Brevibacterium linens BL2] Length = 495 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 112/245 (45%), Gaps = 23/245 (9%) Query: 14 DLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS---KT 66 +L NIL L K + +VGG+VRD+L+ + D+D T PD ++ + S T Sbjct: 16 ELENILGPLGKRFAAAGFELALVGGSVRDALLGRPMPDLDFTTDARPDDILALISDWVDT 75 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 + + +GTI I +ITT R++ + R V F D AD +RRDFTI Sbjct: 76 HWDI---GREFGTIGAIKSGAQIEITTYRAEAYDPESRKPTVQFGTDLDADLVRRDFTIG 132 Query: 126 ALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ +D G DL I+ G A +D LR++R RF A G +D Sbjct: 133 AMAIRLPAMTFVDPFDGFTDLVEGVIRTPGTAADSFSDDPLRMMRAARFTAQLG---LDP 189 Query: 185 DGLVASIKA-----KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 VA ++A + I+S+ERI E+ KL+ +P I + + + +V Sbjct: 190 ---VAEVEAAMRDMADRIAIISAERIQVELFKLMTGIDPAAGIDLLVRTDVADHVLPEVA 246 Query: 240 EISLD 244 + L+ Sbjct: 247 GLRLE 251 >gi|323978871|gb|EGB73951.1| poly A polymerase head domain-containing protein [Escherichia coli TW10509] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPAKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|293412433|ref|ZP_06655156.1| phosphatase [Escherichia coli B354] gi|293416495|ref|ZP_06659134.1| multifunctional CCA protein [Escherichia coli B185] gi|291431851|gb|EFF04834.1| multifunctional CCA protein [Escherichia coli B185] gi|291469204|gb|EFF11695.1| phosphatase [Escherichia coli B354] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|114048470|ref|YP_739020.1| metal dependent phosphohydrolase [Shewanella sp. MR-7] gi|123131162|sp|Q0HSE2|CCA_SHESR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|113889912|gb|ABI43963.1| metal dependent phosphohydrolase [Shewanella sp. MR-7] Length = 416 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 24/249 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P+++ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDFMVVGATPEQMQQLGYRQVGKDFPVFLHPKT-----QQEYA 59 Query: 90 DITTLRSDLITDGR---YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G YA T + D LRRD TINA+ D+ G + D G+ D+ Sbjct: 60 LARTERKVGLGYGGFSCYASPDVT--LEQDLLRRDLTINAIAQDEAGNLHDPFHGIADIE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A + E ++ L+ + + L L+ Sbjct: 118 ARQLRHVSAA---FSEDPLRVLRVARFAARFHGLGFEIAPETMALMQHMSQTEELTALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E++K L +P + G K +F ++ D L V + E+ + +ID+ Sbjct: 175 ERVWQEVDKSLGGPHPEVFFEVLRQCGALKVLFPEI-----DALFGVPQPEK-WHPEIDT 228 Query: 263 LLRFIVLIS 271 L +++++ Sbjct: 229 GLHTMMVLA 237 >gi|261250263|ref|ZP_05942839.1| poly(A) polymerase [Vibrio orientalis CIP 102891] gi|260939379|gb|EEX95365.1| poly(A) polymerase [Vibrio orientalis CIP 102891] Length = 453 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 119/266 (44%), Gaps = 30/266 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R Sbjct: 37 NALKVLYRLNGAGFDAYLVGGGVRDLLLGQQPKDFDIATNATPEQIRQLFKNCRL----I 92 Query: 74 SISYGTIKIICRKKYFDITTLRSD----------------LITDGRYAKVVFTRDWKADS 117 + I+ + ++ T R L+ D Y + D+ Sbjct: 93 GRRFRLAHIMFGRDIIEVATFRGHHQEPNKNVSQQSKEGMLLRDNVYGTI------DEDA 146 Query: 118 LRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NA+Y + I DY GG DL ++ I+ +GD R ED +R+LR RF Sbjct: 147 ERRDFTVNAMYYNIGDYSIHDYAGGHEDLEDKLIRLLGDPETRYREDPVRMLRAIRFAVK 206 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +I+ D + L+ + + R++ E K+L++ + L M +F+++F Sbjct: 207 L-DFDIEEDTAAPIEEMATLLQDIPAARLYEESLKMLQSGHGLETYHLMREYNLFQQLFP 265 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDS 262 + E ++ EQ+ + +DS Sbjct: 266 TIAEFFTEEYDSP--TEQMLDLVLDS 289 >gi|227496625|ref|ZP_03926901.1| tRNA adenylyltransferase [Actinomyces urogenitalis DSM 15434] gi|226833858|gb|EEH66241.1| tRNA adenylyltransferase [Actinomyces urogenitalis DSM 15434] Length = 489 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 3/203 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+ + + D+D T+ PD I ++ +GTI Sbjct: 46 ALVGGPVRDAFLGVVPHDLDCTTSARPDETEAILTQWGDACWDIGKEFGTIGARKGDVVV 105 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT R++ G R V + + D RRDFT+NA+ +++D GG DL Sbjct: 106 EVTTYRTEEYEVGSRKPVVAYGETLEGDLTRRDFTVNAMALRLPDLELVDPCGGRADLEA 165 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ A +D LRI+R RF A G +++ D L A + L+I+S+ER+ + Sbjct: 166 GVLRTPVTAVQSFDDDPLRIMRAARFAAQLG-FDVEMDVLEAMSEMAGRLEIVSAERVRA 224 Query: 208 EINKLLEAKNPLNAIVHMYNGGI 230 E+ +LL ++ P + M + G+ Sbjct: 225 ELERLLTSRWPRRGLELMVHSGV 247 >gi|323966585|gb|EGB62018.1| poly A polymerase head domain-containing protein [Escherichia coli M863] gi|327251842|gb|EGE63528.1| poly A polymerase head domain protein [Escherichia coli STEC_7v] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPAKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|323702567|ref|ZP_08114230.1| CBS domain containing protein [Desulfotomaculum nigrificans DSM 574] gi|323532541|gb|EGB22417.1| CBS domain containing protein [Desulfotomaculum nigrificans DSM 574] Length = 910 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 102/421 (24%), Positives = 185/421 (43%), Gaps = 44/421 (10%) Query: 15 LINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKT 66 ++NIL+ + DK VGG VRD L+ + D+D+ ++ +++ + Sbjct: 463 IMNILTKAGEVADKLNYQVYAVGGLVRDVLLKVENFDVDLVVEGNGILMANQLAAVLGGR 522 Query: 67 RYKVIPTSISYGTIKIICRKKYF-DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + T +GT +II Y+ D+ T R + V + D RRDFTIN Sbjct: 523 ----VRTHEKFGTAEIIFPDGYWVDVVTARVEYYEYPAALPQVEQSSLRHDLYRRDFTIN 578 Query: 126 A----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 A L + G+++DY G DL+ I+ + + +ED RILR RF Y + Sbjct: 579 AMAVALNPGRFGELVDYFNGREDLQIGAIRVLHNLS--FVEDPTRILRAIRFEQRY-DMA 635 Query: 182 IDSDG--LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI----FKEI- 234 I+ L+ +K + LS+ER+W E+ +LE +P + + M G+ F EI Sbjct: 636 IEPQTMRLIKEAVREKVIARLSTERMWGELKSILEEADPEHMLDRMSELGVWDYLFPEIT 695 Query: 235 FLDVQEISLDQLSQVIE-------AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 F +VQ + + ++ Q + AE +W L F+ ++ W + + + ++++L Sbjct: 696 FWEVQPV-ISEMPQALMILRNWGWAEPAEKW----LPYFLAILHWTTQDTAYQICQRYNL 750 Query: 288 P-REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346 R+ L + + + LS PE L L +K++ + L L ++ Sbjct: 751 GRRQTDKVLDTIAHWREALRRLSAPEDVPLSAL--NKIVQTLPREAYPLFLTLLEDKNAI 808 Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 +++ + +H KP + G D+ G PG L Q ++ Q +E+L + Sbjct: 809 RRFRLVMESVHKHKPT--VNGKDIRDMGFKPGPLYRRALDSVWQARLDGLVQTREEELAY 866 Query: 407 L 407 + Sbjct: 867 V 867 >gi|328474187|gb|EGF44992.1| poly(A) polymerase [Vibrio parahaemolyticus 10329] Length = 455 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 119/261 (45%), Gaps = 23/261 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R+++ Sbjct: 41 LKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRL 100 Query: 71 IPTSISYGTIKIIC--------RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 I++ + K + L+ D Y + D+ RRDF Sbjct: 101 AHIMFGRDIIEVATFRGHHQEQKNKNISQQSKEGMLLRDNVYGTI------DEDAERRDF 154 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN++Y + I DY G+ DL +R I+ IGD R ED +R+LR RF + + Sbjct: 155 TINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 213 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I+ D + L+ + S R++ E KLL++ + L + +F+++F + E Sbjct: 214 IEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLFPAISEH 273 Query: 242 SLDQLSQVIEAEQVFEWKIDS 262 + S EQ+ + +DS Sbjct: 274 FTEDYSS--HTEQMLDLVLDS 292 >gi|319638160|ref|ZP_07992923.1| PolyA polymerase [Neisseria mucosa C102] gi|317400433|gb|EFV81091.1| PolyA polymerase [Neisseria mucosa C102] Length = 450 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 14/203 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIP 72 I L++ ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++ R++++ Sbjct: 43 IAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKIFRRSRIIGHRFQIVH 102 Query: 73 TSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I TI++ + + + ++ D Y + + D++RRDFT NALY D Sbjct: 103 VMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSI------EEDAMRRDFTCNALYYDP 156 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++ D+ G+ D+ ++ + IG+ R ED +RILR R G + + L + Sbjct: 157 IKEEIWDFHQGVADVADKKLVMIGNPAERYQEDPVRILRAVRLSGKLGFEVEEQTALPIA 216 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI K+L Sbjct: 217 EYAGR-LKNEPVARLFDEIMKIL 238 >gi|289665247|ref|ZP_06486828.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 455 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 16/232 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R Sbjct: 41 NALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRNCRL----I 96 Query: 74 SISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++ ++ ++ T R++ + +GR + + D++RRDFT N Sbjct: 97 GRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFTCN 156 Query: 126 ALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY A + V DY GG D++ R +K IGD R ED +R+LR R A + I++ Sbjct: 157 ALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLAAKL-DFEIEA 215 Query: 185 DGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I G L + R++ EI KL + + +++ + G+F +F Sbjct: 216 -GTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVSSFEGLERYGLFGALF 266 >gi|256370847|ref|YP_003108671.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidimicrobium ferrooxidans DSM 10331] gi|256007431|gb|ACU52998.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidimicrobium ferrooxidans DSM 10331] Length = 462 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 14/224 (6%) Query: 31 IVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD+L+ + D+D T P+ ++ I T + +GT+ Sbjct: 29 LVGGVVRDALLGIEPNGDVDATTDATPEEIVEIVRPVATHFNLTGLRFGTVAFHYHGVPL 88 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD---QQGKVIDYVGGLNDL 145 ++TT R + + R V F D LRRDFT+NA+ + +ID GG+ DL Sbjct: 89 EVTTHRGEAYDSSTRKPTVHFVSALAEDLLRRDFTVNAMAVEVTSDDPTLIDPFGGMEDL 148 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA----KKGLKILS 201 R ++ D +D LR+LR RF A +D + A + A L+++S Sbjct: 149 LARRLRTPMDPRRSFSDDPLRMLRCARFIA-----RLDLEPQRALVDAVHELAPRLEVVS 203 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ERI E+++LL +P + + + + E ++ + L+Q Sbjct: 204 RERIRDELSRLLVVPDPSKGLWFLVDTPLAAEFLPELPALRLEQ 247 >gi|39979137|emb|CAE85511.1| related to tRNA nucleotidyltransferase [Neurospora crassa] Length = 599 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 33/236 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRI----------FSKTRYKVIPTSISYGTIK 81 GG VRD L+ DID+A + + + R+ + P + G + Sbjct: 115 AGGWVRDKLLGTESNDIDVAINNMTGEAFALRLRDYCDADPAHRERHSIGPADV--GNLH 172 Query: 82 IICR----KKYFDITT------------LRSDLIT-DGRYAKVVFTRDWKADSLRRDFTI 124 I R K+ + TT LR + T D R+ +V F + D+LRRD T+ Sbjct: 173 KIARNPDKSKHLETTTIKLFGLDVDLVNLRKETYTEDSRHPQVEFG-TAEEDALRRDATV 231 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNI 182 NAL+ + GKV D+ GG+ D+ + I+ + ++D LR+LR RF G + Sbjct: 232 NALFYNLHTGKVEDFTGGMKDMERKLIRTPLEPLQTFMDDPLRVLRLIRFACRLGFTIDE 291 Query: 183 DSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++ ++ + + LK+ +S ER+ E+ K+L+ +P +++ ++ N ++ +F D Sbjct: 292 ETKAVMGDERVLEALKLKISRERVGVELEKMLKGPDPFSSLTYINNLSLYHTLFTD 347 >gi|300937461|ref|ZP_07152287.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 21-1] gi|300457496|gb|EFK20989.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 21-1] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|281602445|gb|ADA75429.1| Multifunctional CCA protein [Shigella flexneri 2002017] gi|332752729|gb|EGJ83114.1| poly A polymerase head domain protein [Shigella flexneri K-671] gi|333014921|gb|EGK34266.1| poly A polymerase head domain protein [Shigella flexneri K-304] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 37/299 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ LSV+D D + P ++ + + P + T ++Y Sbjct: 5 LVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQT-----HEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G +T + D RRD TINAL D G++ID GL DL+ Sbjct: 60 LARTERKS--GSGYTGFTCYTAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQ 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSS 202 NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L+ Sbjct: 118 NRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E L +NP + + G + +F ++ D L V A + +ID+ Sbjct: 175 ERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEIDT 228 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 229 GIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHG 274 >gi|295675599|ref|YP_003604123.1| poly(A) polymerase [Burkholderia sp. CCGE1002] gi|295435442|gb|ADG14612.1| poly(A) polymerase [Burkholderia sp. CCGE1002] Length = 531 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 22/182 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 87 IRVTEGLQQAGFRAFIVGGAVRDLLLGVKPKDFDVATDATPEQVQKLFRRARIIGRRFQI 146 Query: 68 ------YKVIPTSISYGTIKIIC-------RKKYFDITTLRSDLITDGRYAKVVFTRDWK 114 ++I TS + R K ++ + GR + + Sbjct: 147 VHVQFGQEIIETSTFRALVDPPAADAAPPKRLKRDELDRRTHAVDASGRVLRDNVWGEQH 206 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 207 EDATRRDFTINAMYYDPATQTVLDYHNGMADMRTRLLRMIGDPATRYREDPVRMLRVVRF 266 Query: 174 FA 175 A Sbjct: 267 AA 268 >gi|261380692|ref|ZP_05985265.1| poly(A) polymerase [Neisseria subflava NJ9703] gi|284796403|gb|EFC51750.1| poly(A) polymerase [Neisseria subflava NJ9703] Length = 450 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 14/203 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIP 72 I L++ ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++ R++++ Sbjct: 43 IAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKIFRRSRIIGRRFQIVH 102 Query: 73 TSISYGTIKIICRKKYFDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I TI++ + + + ++ D Y + + D++RRDFT NALY D Sbjct: 103 VMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSI------EEDAMRRDFTCNALYYDP 156 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++ D+ G+ D+ ++ + IG+ R ED +RILR R G + + L + Sbjct: 157 IKEEIWDFHQGVADVADKKLVMIGNPAERYQEDPVRILRAVRLSGKLGFEVEEQTALPIA 216 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 A + LK R++ EI K+L Sbjct: 217 EYAGR-LKNEPVARLFDEIMKIL 238 >gi|323188500|gb|EFZ73785.1| poly A polymerase head domain protein [Escherichia coli RN587/1] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPHHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|296118581|ref|ZP_06837159.1| tRNA adenylyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295968480|gb|EFG81727.1| tRNA adenylyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 478 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 6/219 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P V I T I +GT+ + + + + Sbjct: 42 LVGGSVRDALLGRLGNDLDFTTDARPQVVHEILDSWAETTWDTGIEFGTVSAVYKGQQIE 101 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 ITT R+DL D R +V F D +RRDF +NA L AD + D + GL DL Sbjct: 102 ITTFRADLYDGDSRNPEVTFGNTLDDDLIRRDFKVNAMAIELRADGTREFFDPMEGLKDL 161 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + + +D LR+LR RF + + + A + ++ ++ ERI Sbjct: 162 QAGIMDTPDAPELSFRDDPLRMLRAARFVSQL-QFGVSDRVRQAMTDMAEEIRRITVERI 220 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E++K++ P + I + G+ + IF ++ ++++ Sbjct: 221 QVEMDKMILGVAPWDGIDLLVETGLAQIIFPEIPAMAME 259 >gi|270284638|ref|ZP_05966443.2| tRNA adenylyltransferase [Bifidobacterium gallicum DSM 20093] gi|270276581|gb|EFA22435.1| tRNA adenylyltransferase [Bifidobacterium gallicum DSM 20093] Length = 512 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 14/255 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L+ D+D T+ P++ ++R + K + + +GT+ + R+ Sbjct: 40 ALVGGPVRDLLLGRPSHDLDFCTSATPEQFEPILRRYGKDGFWDM--GRKFGTLGALRRR 97 Query: 87 K-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYV 139 ++TT RSD+ D R +V + + D RRDFT+NA+ + +D Sbjct: 98 DDGTEVQMEVTTYRSDVYDPDSRKPEVNYGDSLEGDLSRRDFTVNAMALRVPDLEFVDPF 157 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG +DL + ++ D +D LR++R RF A G +I + A + I Sbjct: 158 GGASDLHKQVLRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FHIAPETAEAMTDMVDRIDI 216 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +S+ER+ E+ KLL ++ P + G+ +F ++ + L ++ + + VFE Sbjct: 217 VSAERVRDELTKLLLSERPRLGLEAFVESGLANIVFPEIPALQL-EIDEHHRHKDVFEHT 275 Query: 260 IDSLLRFIVLISWQD 274 + + R + L + D Sbjct: 276 MIVVDRAVALETGPD 290 >gi|28899278|ref|NP_798883.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633] gi|308094714|ref|ZP_05891383.2| polyA polymerase [Vibrio parahaemolyticus AN-5034] gi|308125331|ref|ZP_05774567.2| polyA polymerase [Vibrio parahaemolyticus K5030] gi|28807502|dbj|BAC60767.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633] gi|308089641|gb|EFO39336.1| polyA polymerase [Vibrio parahaemolyticus AN-5034] gi|308111753|gb|EFO49293.1| polyA polymerase [Vibrio parahaemolyticus K5030] Length = 453 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 31/265 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R Sbjct: 39 LKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL----IGR 94 Query: 76 SYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKADSL 118 + I+ + ++ T R L+ D Y + D+ Sbjct: 95 RFRLAHIMFGRDIIEVATFRGHHQEQKNKNISQQSKEGMLLRDNVYGTI------DEDAE 148 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN++Y + I DY G+ DL +R I+ IGD R ED +R+LR RF Sbjct: 149 RRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFAVKL 208 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + S R++ E KLL++ + L + +F+++F Sbjct: 209 -DFDIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLFPA 267 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDS 262 + E + S EQ+ + +DS Sbjct: 268 ISEHFTEDYSS--HTEQMLDLVLDS 290 >gi|170680641|ref|YP_001745328.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli SMS-3-5] gi|331674598|ref|ZP_08375358.1| multifunctional CCA protein [Escherichia coli TA280] gi|226702054|sp|B1LF48|CCA_ECOSM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|170518359|gb|ACB16537.1| multifunctional CCA protein [Escherichia coli SMS-3-5] gi|331068692|gb|EGI40087.1| multifunctional CCA protein [Escherichia coli TA280] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|154486329|ref|ZP_02027736.1| hypothetical protein BIFADO_00138 [Bifidobacterium adolescentis L2-32] gi|154084192|gb|EDN83237.1| hypothetical protein BIFADO_00138 [Bifidobacterium adolescentis L2-32] Length = 458 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 10/253 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D T+ P++ I + + +GT+ + R++ Sbjct: 10 ALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGHDGFWDMGRKFGTLGAMRRRED 69 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141 ++TT RSD D R +V + + D RRDFT+NA+ + + +D GG Sbjct: 70 GTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPELEFVDPFGG 129 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 NDL ++ D +D LR++R RF A G + I+ + A ++I+S Sbjct: 130 ANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSDMVDRIEIVS 188 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ KLL + P I + + G+ + ++ + L ++ + + VFE + Sbjct: 189 AERVRDELVKLLLSDRPRAGIEALVDSGLADIVLPEIPALQL-EIDEHHRHKDVFEHTMI 247 Query: 262 SLLRFIVLISWQD 274 + R + L + D Sbjct: 248 VIERAVALETGPD 260 >gi|117921514|ref|YP_870706.1| metal dependent phosphohydrolase [Shewanella sp. ANA-3] gi|166233879|sp|A0KZT1|CCA_SHESA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|117613846|gb|ABK49300.1| metal dependent phosphohydrolase [Shewanella sp. ANA-3] Length = 416 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 40/257 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P+++ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDFMVVGATPEQMQQLGYRQVGKDFPVFLHPKT-----QQEYA 59 Query: 90 DITTLRSDLITDGR---YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G YA T + D LRRD TINA+ D+ G + D G+ D+ Sbjct: 60 LARTERKVGLGYGGFSCYASPDVT--LEQDLLRRDLTINAIAQDEAGNLYDPYHGIADIN 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A + E ++ L+ + + L L+ Sbjct: 118 ARQLRHVSAA---FAEDPLRVLRVARFAARFHDLGFEIAAETMALMQHMSQTEELTALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVIEA----EQVF 256 ER+W E++K L GG E+F +V Q +L+ L IEA Q Sbjct: 175 ERVWQEVDKSL--------------GGPHPEVFFEVLRQCGALNILFPEIEALFGVPQPE 220 Query: 257 EW--KIDSLLRFIVLIS 271 +W +ID+ L +++++ Sbjct: 221 KWHPEIDTGLHTMLVLA 237 >gi|224025809|ref|ZP_03644175.1| hypothetical protein BACCOPRO_02551 [Bacteroides coprophilus DSM 18228] gi|224019045|gb|EEF77043.1| hypothetical protein BACCOPRO_02551 [Bacteroides coprophilus DSM 18228] Length = 477 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 11/231 (4%) Query: 18 ILSLLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 I SL++K D+ C VGG VRD +N +DIDI + + F K + Sbjct: 11 IFSLISKTADEMGLECYAVGGYVRDIFLNRPSKDIDIVVVGSGIEIAQAFGKKLGRGAHV 70 Query: 74 SI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----L 127 S+ ++GT ++ + R + + +V + D RRDFTINA L Sbjct: 71 SVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAVCL 130 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + G+++D GG+ DL+ R I+ D +D LR++R RF I+ + Sbjct: 131 NQARFGELVDPFGGMEDLKERIIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIEDETF 189 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 A + K+ +KI+S ERI E+NK+L + P V + G+ + IF ++ Sbjct: 190 AALERNKERIKIISRERIADELNKILLSPIPSKGFVELDRCGLLELIFPEL 240 >gi|119026636|ref|YP_910481.1| RNA nucleotidyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|118766220|dbj|BAF40399.1| probable RNA nucleotidyltransferase [Bifidobacterium adolescentis ATCC 15703] Length = 472 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 10/253 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PTSISYGTIKIICRKK- 87 +VGG VRD L++ D+D T+ P++ I + + +GT+ + R++ Sbjct: 24 ALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGHDGFWDMGRKFGTLGAMRRRED 83 Query: 88 ----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141 ++TT RSD D R +V + + D RRDFT+NA+ + + +D GG Sbjct: 84 GTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPELEFVDPFGG 143 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 NDL ++ D +D LR++R RF A G + I+ + A ++I+S Sbjct: 144 ANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSDMVDRIEIVS 202 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ KLL + P I + + G+ + ++ + L ++ + + VFE + Sbjct: 203 AERVRDELVKLLLSDRPRAGIEALVDSGLADIVLPEIPALQL-EIDEHHRHKDVFEHTMI 261 Query: 262 SLLRFIVLISWQD 274 + R + L + D Sbjct: 262 VIERAVALETGSD 274 >gi|24114356|ref|NP_708866.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella flexneri 2a str. 301] gi|30064404|ref|NP_838575.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella flexneri 2a str. 2457T] gi|73619846|sp|Q821A6|CCA_SHIFL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|24053520|gb|AAN44573.1| tRNA nucleotidyl transferase [Shigella flexneri 2a str. 301] gi|30042661|gb|AAP18385.1| tRNA nucleotidyl transferase [Shigella flexneri 2a str. 2457T] gi|313648172|gb|EFS12618.1| poly A polymerase head domain protein [Shigella flexneri 2a str. 2457T] gi|332754636|gb|EGJ85002.1| poly A polymerase head domain protein [Shigella flexneri 2747-71] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 37/299 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ LSV+D D + P ++ + + P + T ++Y Sbjct: 5 LVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQT-----HEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G +T + D RRD TINAL D G++ID GL DL+ Sbjct: 60 LARTERKS--GSGYTGFTCYTAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQ 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSS 202 NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L+ Sbjct: 118 NRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E L +NP + + G + +F ++ D L V A + +ID+ Sbjct: 175 ERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEIDT 228 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 229 GIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHG 274 >gi|298368846|ref|ZP_06980164.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314] gi|298282849|gb|EFI24336.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314] Length = 453 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 12/213 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ + +D D+AT P+ V +IF ++R + + ++ + Sbjct: 53 EAYVVGGAVRDLLLGIEPKDFDVATNATPEEVRKIFRRSRI----IGRRFQIVHVMVGPE 108 Query: 88 YFDITTLR-SDLITDGRYAKVVFTRDW---KADSLRRDFTINALYADQQGK-VIDYVGGL 142 ++TT R + ++ +++ ++ + D++RRDFT NALY D + ++D+ G Sbjct: 109 TIEVTTFRGGGKVVQNQHGRIMKDNNYGSMEEDAMRRDFTCNALYYDPIRRLIVDFHHGA 168 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILS 201 D++ + + IG+ R ED +RILR R G + + A I G LK Sbjct: 169 ADVQAKKLVMIGNPAERYQEDPVRILRAVRLSGKLGFEV--EEHTAAPIPEYAGRLKQEP 226 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 R++ EI KLL + + + + + GI +I Sbjct: 227 VSRLFDEILKLLFSGHARDCLQQLNKLGIGSDI 259 >gi|298485293|ref|ZP_07003385.1| tRNA nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160143|gb|EFI01172.1| tRNA nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 409 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTYFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|93004954|ref|YP_579391.1| poly(A) polymerase [Psychrobacter cryohalolentis K5] gi|92392632|gb|ABE73907.1| poly(A) polymerase [Psychrobacter cryohalolentis K5] Length = 753 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 10/171 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +++ L + + IVGG VRD+L+ L +D D T P + +F K R ++I Sbjct: 20 ITEVIATLTRAGFDAYIVGGGVRDTLLGLRPKDFDAVTDAKPHEIKDVFGK-RCRII--G 76 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRD--W---KADSLRRDFTINALY 128 + + ++ ++ T R I D + + RD W K D RRDF+INALY Sbjct: 77 RRFQLAHVYSGRELIEVATFRGPPINDSNTNQDGMILRDNVWGDIKQDFARRDFSINALY 136 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +G V D+ L D+ N+ I+ +G+A RI ED +R+LR RF A G Sbjct: 137 YQPLKGIVHDFCDALEDIDNKIIRLLGNAPIRIEEDPVRLLRALRFKAKLG 187 >gi|89095126|ref|ZP_01168052.1| poly(A) polymerase [Oceanospirillum sp. MED92] gi|89080621|gb|EAR59867.1| poly(A) polymerase [Oceanospirillum sp. MED92] Length = 467 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 12/239 (5%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT- 66 + F D + + + L + +VGG +RD L+ +D D+AT P+ +F + Sbjct: 45 RRFLDDNALKVAYRLQDAGFEGYLVGGCIRDLLLKKRPKDFDVATDAHPEEAAELFRRAR 104 Query: 67 ----RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADS 117 R+K++ I++ + D + + + + RD + D+ Sbjct: 105 LIGRRFKLVHVRFGRDLIEVATFRASHDSQSEEGEGEQGKQCDSGLILRDNVYGTIEDDA 164 Query: 118 LRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 LRRDFT+NAL Y + V D+ G DL+ ++ IGD R ED +R+LR RF A Sbjct: 165 LRRDFTVNALYYCPKDHCVYDFANGYEDLQKGILRMIGDPEARYKEDPVRMLRAARFAAK 224 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + ID + I LK ++ R++ E+ KL ++ + + + + +F+ +F Sbjct: 225 L-DFTIDPQSELPIIPLAPMLKRIAPARLFDEVLKLFQSGHAVQSYEQLRRLELFEPLF 282 >gi|15602112|ref|NP_245184.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pasteurella multocida subsp. multocida str. Pm70] gi|73619816|sp|Q9CP21|CCA_PASMU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|12720475|gb|AAK02331.1| Cca [Pasteurella multocida subsp. multocida str. Pm70] Length = 420 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + PD ++ + K P + T +++Y Sbjct: 5 LVGGAVRDQLLNLVVKDRDWVVVGATPDDLLSQGYQQVGKDFPVFLHPQT-----KEEY- 58 Query: 90 DITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ Y + T + D RRD TINAL D GK+ D+ GGL DL Sbjct: 59 --ALARTERKAGSGYTGFICDFSPTISLEQDLSRRDLTINALAQDLDGKIYDFYGGLTDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + R ++ + A ED LR+LR RF A Y ++ L+ + L L+ Sbjct: 117 KQRLLRHVSPA---FAEDPLRVLRVARFAARYHALGFTIASETRELMQQLSQSGELSNLT 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E K L +P Sbjct: 174 AERVWLETEKALLEPHP 190 >gi|291618936|ref|YP_003521678.1| Cca [Pantoea ananatis LMG 20103] gi|291153966|gb|ADD78550.1| Cca [Pantoea ananatis LMG 20103] Length = 429 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 104/234 (44%), Gaps = 42/234 (17%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPD--------RVMRIF-------SKTRYKVI 71 K+ +VGGAVRD+L+ L V+D D + P+ +V R F S+ Y + Sbjct: 26 KTFLVGGAVRDALLKLPVKDKDWVVVGATPEAMLEQGYQQVGRDFPVFLHPDSREEYALA 85 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T G K Y TT + +T + D RRD TINA+ D Sbjct: 86 RTERKNG-------KGYTGFTTWSAPDVT------------LEQDLQRRDLTINAIARDA 126 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGL 187 QG++ D G D+ +R ++ + DA ED LR+LR RF A + N ++ L Sbjct: 127 QGELYDPYHGQKDIADRQLRHVSDA---FSEDPLRVLRVARFAARFAHLNFRIADETQAL 183 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + L L++ER+W E K L + NP + + G + +F ++ + Sbjct: 184 MRQMAESGELADLTAERVWKETEKALSSHNPQVYFQVLRDCGALQGLFPEIDNL 237 >gi|271970534|ref|YP_003344730.1| hypothetical protein Sros_9369 [Streptosporangium roseum DSM 43021] gi|270513709|gb|ACZ91987.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 479 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 3/217 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD L+ D+D+ T P+ V+ + + I +GT+ + Sbjct: 40 ALVGGSVRDVLLGRIGNDLDLTTDARPETVLELIRDWADSIWTIGIDFGTVGVRKGNWLL 99 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRN 147 +ITT RS+ R VV+ + D RRDF +NA+ + +D GGL+DL Sbjct: 100 EITTYRSESYDPKSRKPDVVYGDTLEGDLARRDFAVNAMALRLPSREFVDPHGGLDDLHA 159 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + ++ +D LR+LR RF + +D A + ++I+S+ERI Sbjct: 160 KVLRTPALPERSFDDDPLRMLRAARFASQLA-FTVDPAAFAAMTAMAERIEIVSAERIRD 218 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+NKL+ +P + + + G+ + ++ ++ L+ Sbjct: 219 ELNKLICGDHPREGLKVLVDSGLASHVLPELPKLRLE 255 >gi|238026306|ref|YP_002910537.1| poly(A) polymerase [Burkholderia glumae BGR1] gi|237875500|gb|ACR27833.1| Poly(A) polymerase [Burkholderia glumae BGR1] Length = 525 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 29/192 (15%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKV 70 + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R +++ Sbjct: 82 VRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQI 141 Query: 71 IPTSISYGTIKIIC----------------------RKKYFDITTLRSDLI-TDGRYAKV 107 + I++ R+ D R+ + GR + Sbjct: 142 VHVQFGQELIEVSTFRALVDAPADAPASAPADAAPPRRMKRDELDRRTHAVDASGRVLRD 201 Query: 108 VFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R Sbjct: 202 NVWGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADVRARLLRMIGDPATRYREDPVR 261 Query: 167 ILRFFRFFAHYG 178 +LR RF A G Sbjct: 262 MLRVVRFAAKLG 273 >gi|309972803|gb|ADO96004.1| Poly(A) polymerase I [Haemophilus influenzae R2846] Length = 452 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|333000116|gb|EGK19699.1| poly A polymerase head domain protein [Shigella flexneri K-218] Length = 412 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 41/301 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ LSV+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 G 321 G Sbjct: 274 G 274 >gi|154173660|ref|YP_001408086.1| polyA polymerase family protein [Campylobacter curvus 525.92] gi|153792994|gb|EAU00492.2| polyA polymerase family protein [Campylobacter curvus 525.92] Length = 383 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 29/271 (10%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM 60 +S + K +SDL + LL + +VGG VRD+L+ + D DI I P + Sbjct: 1 MSKIGSKICQNSDLDEVRRLLAPHTTRVYLVGGCVRDTLLGREIYDYDIEIYDIYPHK-- 58 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSL 118 F + + + G I + K FD+ RS+ T R+ V + D + L Sbjct: 59 --FDALMQSIGASGV--GKSYFIYKFKNFDLGLPRSESKTGERHKDFAVSYINDPRTACL 114 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+ + G+++D+ GG +DLR + ++ I +A + ED LR+LR +F A Sbjct: 115 RRDFTINAMMINIFDGELLDFYGGRDDLRGQILRHIDEA--KFCEDALRVLRGVQFSARL 172 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN---------PLNAIVHMYN- 227 G I + L ++ K L+ LS ERI +E+ K +A N LN + ++ Sbjct: 173 G-FTIAPETL--NLMKKLPLENLSRERINAELVKFFKAPNLHIGARYLFELNLLGWLFGK 229 Query: 228 --GGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 GG FK + + QE D+ + +++ + F Sbjct: 230 FVGGEFKGLCISRQE--FDKFNALLKNARKF 258 >gi|257483099|ref|ZP_05637140.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330985803|gb|EGH83906.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011668|gb|EGH91724.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 409 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 97/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYARYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEDQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|268591287|ref|ZP_06125508.1| hypothetical protein PROVRETT_07561 [Providencia rettgeri DSM 1131] gi|291313263|gb|EFE53716.1| polyA polymerase [Providencia rettgeri DSM 1131] Length = 539 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 13/233 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F R+ Sbjct: 118 NALKVLYRLNKSGFEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFRNCRLVGRRF 177 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFT 123 ++ I++ + + D + D + + RD + D++RRDFT Sbjct: 178 RLAHIMFGPEIIEVATFRGHHD-QNVSDDKNLSAQAQNGMLLRDNIFGSIEEDAIRRDFT 236 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +N+LY + + + DYV GL DL+ I+ IGD R ED +R+LR RF +I Sbjct: 237 VNSLYYNIEDFTLRDYVNGLKDLKAGVIRLIGDPETRYREDPVRMLRAVRFACKLN-MSI 295 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + L+ + S R++ E KLL+A + G+F+++F Sbjct: 296 EPKTAEPIYQLAHLLREIPSARLFEESLKLLQAGQGYATYKMLKKYGLFEQLF 348 >gi|145636731|ref|ZP_01792397.1| polyA polymerase [Haemophilus influenzae PittHH] gi|145270029|gb|EDK09966.1| polyA polymerase [Haemophilus influenzae PittHH] Length = 452 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|119943963|ref|YP_941643.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Psychromonas ingrahamii 37] gi|166233873|sp|A1SRC9|CCA_PSYIN RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|119862567|gb|ABM02044.1| metal dependent phosphohydrolase [Psychromonas ingrahamii 37] Length = 409 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 28/224 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD L+ L V+D D + PD+++++ + K P I T + Sbjct: 5 LVGGAVRDQLLQLKVKDRDYVVIAATPDKLLKLGFQQVGKDFPVFIHPQTGDEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RKK D V T D K RRD TINA+ QG++ID GL D Sbjct: 65 RKKGSGHNGFECYAGLD-----VTLTEDLK----RRDLTINAIAQSPQGELIDPYHGLQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-------GEKNIDSDGLVASIKAKKGL 197 ++ +T++ I A ED LR+LR RF A + + +D L+ S+ + L Sbjct: 116 IQTKTLRHISTA---FSEDPLRVLRVARFAARFYDLGFKIAPETLD---LMRSLSSSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L++ER+W E L+ NP + + G +F +++ + Sbjct: 170 NHLTAERVWQETANALKTNNPQIYFQVLRDCGALPLLFPEIEAL 213 >gi|209920527|ref|YP_002294611.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli SE11] gi|226702053|sp|B6I427|CCA_ECOSE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|209913786|dbj|BAG78860.1| tRNA nucleotidyltransferase [Escherichia coli SE11] gi|324018179|gb|EGB87398.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 117-3] Length = 412 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 153/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHEGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|209520582|ref|ZP_03269337.1| poly(A) polymerase [Burkholderia sp. H160] gi|209498975|gb|EDZ99075.1| poly(A) polymerase [Burkholderia sp. H160] Length = 547 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 22/182 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-------- 67 I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 103 IRVTEGLQQAGYRAFIVGGAVRDLLLGVKPKDFDVATDATPEQVQKLFRRARIIGRRFQI 162 Query: 68 ------YKVIPTSISYGTIKIIC-------RKKYFDITTLRSDLITDGRYAKVVFTRDWK 114 ++I TS + R K ++ + GR + + Sbjct: 163 VHVQFGQEIIETSTFRALVDPPAADAAPPKRLKRDELDRRTHAVDASGRVLRDNVWGEQH 222 Query: 115 ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R ED +R+LR RF Sbjct: 223 EDATRRDFTINAMYYDPATETVLDYHNGMADMRARLLRMIGDPATRYREDPVRMLRVVRF 282 Query: 174 FA 175 A Sbjct: 283 AA 284 >gi|42527232|ref|NP_972330.1| polyA polymerase family protein [Treponema denticola ATCC 35405] gi|41817656|gb|AAS12241.1| polyA polymerase family protein [Treponema denticola ATCC 35405] gi|325474278|gb|EGC77466.1| PolyA polymerase [Treponema denticola F0402] Length = 380 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 18/207 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + I+ LN ++ IVGGAVRD L+ +D DIAT+ P ++ ++F +R Sbjct: 33 DIEAVKIIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKMFRNSRV--- 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + + I +K ++++T RS DG T D D RRDFT+NALY D Sbjct: 90 -IGRRFRLVHIFFGEKIYEVSTFRS--TEDGSIGNKFGTID--EDVHRRDFTLNALYYDP 144 Query: 132 QGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVA 189 + VIDYV G+ D+R + I+ I ED +R++R ++ A DS Sbjct: 145 IHELVIDYVDGVKDIRAKKIRPIIPLQLIFSEDPVRMIRAIKYAAM-----TDSGIPFFL 199 Query: 190 SIKAKKG---LKILSSERIWSEINKLL 213 ++ +K L+ +S RI EINK++ Sbjct: 200 QLQIRKNAHLLEFVSPSRITEEINKII 226 >gi|271501860|ref|YP_003334886.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya dadantii Ech586] gi|270345415|gb|ACZ78180.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya dadantii Ech586] Length = 416 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 159/357 (44%), Gaps = 55/357 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V + D + P+ ++ + + P + T +++Y Sbjct: 5 LVGGAVRDGLLGRPVTERDWVVVGATPEMLLAQGYQQVGRDFPVFLHPQT-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + + D LRRD TINA+ ++ G++ID GG DL+NR Sbjct: 60 LARTERKSGNGYTGFICQATPNITLEEDLLRRDLTINAIAQEESGQLIDPYGGQRDLQNR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + A ED LR+LR RF A Y ++ L+ ++ L L+ ER Sbjct: 120 LLRHVSQA---FSEDPLRVLRVARFAARYAHLGFQIAEETLHLMQTMTRNGELDFLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E K L ++P + + G +F ++ D+L V Q + +ID+ + Sbjct: 177 VWKETEKALGTQDPQVYFQVLRDCGALAVLFPEI-----DRLYGVPAPAQ-WHPEIDTGI 230 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG--- 321 V++S L+MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 231 H--VMMS-------LAMAARLSPALDVRFATL----CHDLGKGLTPPELWPRHHGHGVAG 277 Query: 322 ---DKVMIAKLKIFLAL--------HYNNLTHQDTCFILQV-----LSDIIH-WKKP 361 + + +L++ AL Y++L H T ILQ L D I W+KP Sbjct: 278 VPLVEALCQRLRVPNALRDLACLVTEYHDLIH--TVQILQPKTLLKLFDAIDVWRKP 332 >gi|74313592|ref|YP_312011.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella sonnei Ss046] gi|123616149|sp|Q3YXI6|CCA_SHISS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|73857069|gb|AAZ89776.1| tRNA nucleotidyl transferase [Shigella sonnei Ss046] gi|323168100|gb|EFZ53787.1| poly A polymerase head domain protein [Shigella sonnei 53G] Length = 412 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 156/362 (43%), Gaps = 65/362 (17%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK--IICRKK 87 +VGGA+RD+L+ L V+D D + P ++ + + P + T + + R + Sbjct: 5 LVGGAIRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 88 ------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 Y D T + +T + D RRD TINAL D G++ID G Sbjct: 65 RKSGSGYTDFTCYAAPDVT------------LEDDLKRRDLTINALAQDDNGEIIDPYNG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGL 197 L DL+NR ++ + A ED LR+LR RF +AH G + D L+ + L Sbjct: 113 LGDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 + L+ ER+W E L +NP + + G + +F ++ D L V A + Sbjct: 170 EHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWH 223 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ Sbjct: 224 PEIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRH 270 Query: 318 YLYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWK 359 + +G + + +L++ L +++L H + I+++ I W+ Sbjct: 271 HGHGPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWR 330 Query: 360 KP 361 KP Sbjct: 331 KP 332 >gi|281180110|dbj|BAI56440.1| tRNA nucleotidyltransferase [Escherichia coli SE15] Length = 412 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 151/354 (42%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVSLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|218701827|ref|YP_002409456.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli IAI39] gi|226702049|sp|B7NJR9|CCA_ECO7I RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|218371813|emb|CAR19668.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli IAI39] Length = 412 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQIGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPAKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|84497211|ref|ZP_00996033.1| putative RNA nucleotidyltransferase [Janibacter sp. HTCC2649] gi|84382099|gb|EAP97981.1| putative RNA nucleotidyltransferase [Janibacter sp. HTCC2649] Length = 483 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 13/239 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + +L + + +VGG VRD+ ++ + D+D T+ P+ I Sbjct: 15 LTELGALFTQAGHELALVGGPVRDAFLDRTPPDLDFTTSASPEETEAILRAWGTATWDMG 74 Query: 75 ISYGTIKIICR----KKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +GTI R + +ITT R+D DG R V F + D +RRDFT+NA+ Sbjct: 75 REFGTIGARRRVGGVETTVEITTYRADAY-DGVTRKPVVAFGESLEEDLVRRDFTVNAMA 133 Query: 129 ADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + ID GGL DL+ ++ +D LR++R RF A G +D Sbjct: 134 LRLPSLEFIDPYGGLADLQAGWLRTPAAPEVSFGDDPLRMMRAVRFVAQLG---LDPAPE 190 Query: 188 V-ASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 V A+++A L+I+S+ERI E+ KLL A P + + G+ + ++ + L+ Sbjct: 191 VYAAMQAMAASLEIVSAERIRDELVKLLLAPRPRAGLELLTVTGLAAHVLPELPALQLE 249 >gi|222034788|emb|CAP77530.1| Multifunctional CCA protein [Escherichia coli LF82] gi|312947627|gb|ADR28454.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O83:H1 str. NRG 857C] Length = 412 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 151/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDNNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|332672277|ref|YP_004455285.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulomonas fimi ATCC 484] gi|332341315|gb|AEE47898.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulomonas fimi ATCC 484] Length = 503 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 79/346 (22%), Positives = 141/346 (40%), Gaps = 27/346 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK------- 65 D I + L + +VGG VRD+ + D+D T+ PD I ++ Sbjct: 34 GDAIELGELFRAAGHELALVGGPVRDAFLGRLSADLDFTTSATPDETEAILARWGDAHWD 93 Query: 66 --TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDF 122 + I G + R ++TT R+D R +VVF + D RRDF Sbjct: 94 IGKEFGTIGARRMPGGRRGAERDVVVEVTTYRTDAYDPSSRKPEVVFGDTLEGDLSRRDF 153 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NA+ + +D GL DL ++ D +D LR++R RF A G Sbjct: 154 TVNAMAVRLPELTFVDPFDGLADLARGVLRTPVDPRQSFDDDPLRMMRAARFAAQLG-FT 212 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ A + + I+S+ER+ E++KLL A P + + + G+ + ++ + Sbjct: 213 VEPAARAAIEDMAERIGIVSAERVRDELSKLLVAAQPRAGLEVLVDTGLADHVLPELPAL 272 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK--------SILSMAKKFSLPREIRY 293 L ++ + + V+E + L + I L + D + ++ PR R+ Sbjct: 273 RL-EIDEHHRHKDVYEHSLTVLDKAIALETGPDGPVPGPDLVLRLAALLHDIGKPRTRRF 331 Query: 294 FL---ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 +SF + L+ +K+L + DK + + LH Sbjct: 332 EPGGGVSFHHHEVVGAKLAAKRLKELRF---DKATVQAVSRLTELH 374 >gi|145633375|ref|ZP_01789105.1| polyA polymerase [Haemophilus influenzae 3655] gi|145635248|ref|ZP_01790952.1| polyA polymerase [Haemophilus influenzae PittAA] gi|229845401|ref|ZP_04465532.1| probable poly polymerase [Haemophilus influenzae 6P18H1] gi|144985938|gb|EDJ92540.1| polyA polymerase [Haemophilus influenzae 3655] gi|145267527|gb|EDK07527.1| polyA polymerase [Haemophilus influenzae PittAA] gi|229811709|gb|EEP47407.1| probable poly polymerase [Haemophilus influenzae 6P18H1] Length = 452 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|332288744|ref|YP_004419596.1| hypothetical protein UMN179_00667 [Gallibacterium anatis UMN179] gi|330431640|gb|AEC16699.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 502 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 16/232 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + ++ L ++ +VGG +RD L++ + +D D+AT P+++ +IF + V Sbjct: 75 LQVVEKLQNNGFEAYVVGGCLRDILLDKTPKDFDVATNARPEQIQKIFQRQCRLV---GR 131 Query: 76 SYGTIKIICRKKYFDITTLRS--DLITDGRYAKV----VFTRD-----WKADSLRRDFTI 124 + I+ ++ ++ T R+ D I + + AK + RD + D+ RRDFT+ Sbjct: 132 RFRLAHILFGREIIEVATFRAAHDAINNDKLAKQSAEGMLLRDNVYGSLEDDAARRDFTV 191 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA Y D ++ K+ D+ G+ DLR + IGD R ED +R+LR RF A + +D Sbjct: 192 NAFYYDPRKDKLYDFFNGIKDLRAGRLMLIGDPTQRYQEDPVRMLRAIRFMAKL-DMFLD 250 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + L+ + + R++ E KLL+ +Y +F ++F Sbjct: 251 KKCEQPIYQLASLLQNIPAARLFDESLKLLQTGKGEKTYQLLYKYQLFHQLF 302 >gi|188533006|ref|YP_001906803.1| poly(A) polymerase I [Erwinia tasmaniensis Et1/99] gi|188028048|emb|CAO95905.1| Poly(A) polymerase [Erwinia tasmaniensis Et1/99] Length = 483 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 112/258 (43%), Gaps = 39/258 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLRS----------DLITDGRYAKVVFTRD-----WKADS 117 + ++ + ++ T R D + R + RD + D+ Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQAVDDRNSSQRDQNGMLLRDNIFGTIEDDA 168 Query: 118 LRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRD TIN+LY V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 169 QRRDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAAK 228 Query: 177 YGEKNIDSDGLVASIKAKKGLKI---------LSSERIWSEINKLLEAKNPLNAIVHMYN 227 L SI A+ G I + R++ E KLL+A + + + Sbjct: 229 ----------LDMSIAAETGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLE 278 Query: 228 GGIFKEIFLDVQEISLDQ 245 +F+ +F + +Q Sbjct: 279 YQLFQPLFPTITRYVTEQ 296 >gi|325965282|ref|YP_004243188.1| tRNA adenylyltransferase [Arthrobacter phenanthrenivorans Sphe3] gi|323471369|gb|ADX75054.1| tRNA adenylyltransferase [Arthrobacter phenanthrenivorans Sphe3] Length = 501 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 7/219 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + + D+D T PD+ + + K ++GTI + RK F Sbjct: 36 SLVGGPVRDLFLGRTSPDLDFTTDATPDQTVALIKKWADNYWEIGRAFGTIGM--RKAGF 93 Query: 90 --DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDL 145 ++TT R++ D R V F D LRRDFTINA+ +++D GG+ DL Sbjct: 94 QIEVTTYRAEAYDPDSRKPVVAFGSSLTDDLLRRDFTINAMALKLPSLELVDPFGGVRDL 153 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + G +D LR++R RF A G ++ D A + + I+S+ER+ Sbjct: 154 HASVLATPGAPELSFSDDPLRMMRAARFAAQLG-VSVHPDVHKAMTDMAERITIISAERV 212 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KL+ P + + + G+ + + +V + L+ Sbjct: 213 RDELVKLICGAQPRAGVDLLVDTGLAEFVLPEVSALRLE 251 >gi|242240239|ref|YP_002988420.1| poly(A) polymerase I [Dickeya dadantii Ech703] gi|242132296|gb|ACS86598.1| poly(A) polymerase [Dickeya dadantii Ech703] Length = 449 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 16/216 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L LNK ++ +VGG VRD L+ +D DI T P++V ++F R Sbjct: 27 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRLVGRR 86 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + + + + RD + D+ RRDF Sbjct: 87 FRLAHVMFGPEVIEVATFRGHHEQHQEQQVKNASQQDQNGMLLRDNIFGTIEEDAQRRDF 146 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 +IN+LY AD V DY G+NDLR I+ +GD R ED +R+LR RF A G Sbjct: 147 SINSLYYSIAD--FTVRDYTNGVNDLRQGIIRLLGDPETRYREDPVRMLRAVRFAAKLGM 204 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 K I + + L + R++ E KLL+A Sbjct: 205 K-ISPETAEPIPRLSSLLHDIPPARLFEEALKLLQA 239 >gi|85712840|ref|ZP_01043882.1| tRNA nucleotidyltransferase [Idiomarina baltica OS145] gi|85693304|gb|EAQ31260.1| tRNA nucleotidyltransferase [Idiomarina baltica OS145] Length = 366 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 29/283 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V D D + PD+++ + + K P + T R++Y Sbjct: 9 LVGGAVRDQLLGCPVGDKDYVVVGATPDQMLALGYQQVGKDFPVFLHPQT-----REEYA 63 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R G T D RRD TINA+ D+ G +ID GG D+ + Sbjct: 64 LARTERKQGQGYTGFQVNTETTITLTQDLERRDLTINAIAEDEHGHLIDPYGGQQDIERK 123 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + A +ED LR+LR RF+A + ++ L+ ++ LK L +ER Sbjct: 124 LLRHVSPA---FVEDPLRVLRVARFYARFKPLGFTVAQETKNLMKAMARSGELKTLVAER 180 Query: 205 IWSEINKLLEAKNPLNAIVHMYN----GGIFKEIFLDVQEIS-LDQLSQVIEAEQVFEWK 259 +W E K L P I + + E+ + +S L Q+SQV + Sbjct: 181 VWREWEKALATDAPAAFIELLVEIDAWSQVMPELTISPSSVSDLQQISQVTQCTHT---- 236 Query: 260 IDSLLRFIVLISWQ-DKKSILSMAKKFSLPREIRYFLISFFNC 301 RF L+ Q D I +++K LP + + + F Sbjct: 237 -----RFATLMLRQGDTFEINLLSQKLRLPNQYKRLAQAVFGS 274 >gi|227328984|ref|ZP_03833008.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 414 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 51/355 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ L V + D + P+ ++ + K P + + R +Y Sbjct: 5 LVGGAVRDSLLGLPVTEKDWVVVGATPENLLTQGYQQVGKDFPV-----FLHPVSRDEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ ++G +ID G DL NR Sbjct: 60 LARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGRRDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 ++ + DA ED LR+LR RF FAH G + + + A +G L L+ ER Sbjct: 120 LLRHVSDA---FSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAYLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E K L +P + + G +F ++ D L V A + +ID+ + Sbjct: 177 VWKETEKALGTSSPDVYFQVLRDCGALAVLFPEI-----DNLYGV-PAPAKWHPEIDTGI 230 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-- 322 ++ + +MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 231 HTMMTV---------AMAARLSPEIDVRFATL----CHDLGKGLTPPELWPRHHGHGPAG 277 Query: 323 ----KVMIAKLKIF--------LALHYNNLTHQDTCF----ILQVLSDIIHWKKP 361 + + +L++ L Y++L H +L++ I W+KP Sbjct: 278 VKLVEALCQRLRVPNPIRDLAKLVAEYHDLVHTVQVLQPKTLLKLFDAIDVWRKP 332 >gi|284923084|emb|CBG36177.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Escherichia coli 042] Length = 412 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPAKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRMPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|300780175|ref|ZP_07090031.1| tRNA adenylyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534285|gb|EFK55344.1| tRNA adenylyltransferase [Corynebacterium genitalium ATCC 33030] Length = 517 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 13/226 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD+++ D+D T+ PD + I S V T I +GT+ + + + Sbjct: 74 LVGGPVRDAMLGRLGNDLDFTTSARPDIIEAILSGWGEAVWDTGIEFGTVSTVKDGQQVE 133 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA-----LYADQQGKVI----DYV 139 ITT R+DL DG R +V F D +RRDF +NA L A+ + + D V Sbjct: 134 ITTFRADLY-DGVTRNPEVTFGDAIDDDLVRRDFRVNAMAIELLVAEGEDSLALDFHDPV 192 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GL DL N + + +D LR+LR RF + G ++ A + + Sbjct: 193 DGLKDLLNHVLDTPQEPEVSFRDDPLRMLRAARFVSQLG-FHVSERVKRAMTDMAQEINR 251 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++ ER+ +E++KL+ P I + G+ + ++ + L++ Sbjct: 252 ITVERVQAELDKLMLGVQPWEGIDLLVETGLADHVLPEIPALKLER 297 >gi|127511941|ref|YP_001093138.1| metal dependent phosphohydrolase [Shewanella loihica PV-4] gi|166233878|sp|A3QBN1|CCA_SHELP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|126637236|gb|ABO22879.1| metal dependent phosphohydrolase [Shewanella loihica PV-4] Length = 413 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV---IPTSISYGTIKIICRKK 87 +VGGAVRD L+N+ ++D D ++ V + K +V P + T +++ Sbjct: 5 LVGGAVRDQLLNIPIKDRDY--MVVGATVQEMLDKGYRQVGKDFPVFLHPKT-----QQE 57 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 Y T R + G ++ V D + D LRRD TINA+ D+ G+V D GG D+ Sbjct: 58 YALARTERKTGVGYGGFS-VYAAPDVTLEEDLLRRDLTINAIAQDETGRVFDPYGGQADI 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + DA +ED LR+LR RF A + ++ L+ I A L+ L+ Sbjct: 117 EQRLLRHVSDA---FVEDPLRVLRVARFAARFQPLGFKVAPETMALMQRIAASGELEALT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER++ E++K L + P Sbjct: 174 PERVFQELDKALSTEAP 190 >gi|146302633|ref|YP_001197224.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacterium johnsoniae UW101] gi|146157051|gb|ABQ07905.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacterium johnsoniae UW101] Length = 495 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 110/242 (45%), Gaps = 33/242 (13%) Query: 29 SCIVGGAVRDSLMNL-SVQDIDIA------------TTILPDRVMRIFSKTRYKVIPTSI 75 S ++GG VRD L+N S +DID+ + +LP+ K + +V T Sbjct: 48 SYVIGGFVRDLLLNRGSKKDIDVVAVGSGIELALKVSDLLPN-------KPKVQVFKT-- 98 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQ 131 YGT + + R + T +V + D RRDFTINAL + Sbjct: 99 -YGTAMLRFEDTDIEFVGARKESYTRDSRNPIVENGTLQDDQNRRDFTINALALSLNSTN 157 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G ++D GL DL N+TIK D +D LR+LR RF + I+ + L A Sbjct: 158 FGDLLDPFDGLTDLENKTIKTPLDPDITYSDDPLRMLRAIRFATQLNFE-IEENSLNAIT 216 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K +KI+S ERI E+NK+L P + + +Y G+ LD+ L L+QV E Sbjct: 217 KNADRIKIISGERIVDELNKILSTPKPSSGFLLLYKTGL-----LDLILPELTALNQVEE 271 Query: 252 AE 253 E Sbjct: 272 IE 273 >gi|76363838|ref|XP_888630.1| possible tRNA nucleotidyltransferase precursor [Leishmania major] gi|12311845|emb|CAC22663.1| putative tRNA nucleotidyltransferase [Leishmania major strain Friedlin] Length = 523 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 25/231 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG----TIKII--- 83 + GG VRD L+ L DIDIA + ++V +++G T+ +I Sbjct: 38 VAGGWVRDMLLGLHSNDIDIAIETHAGAKIVTGEAFAHRVSEYQLAHGGRGHTVSVIRAN 97 Query: 84 -CRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 K+ + T LR+D+ T+ V D+ RRDFTINAL+ + Sbjct: 98 PALSKHIETATVRVHEIPVELCALRTDVYTNESRIPQVRPAAPVEDAQRRDFTINALFYN 157 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G V DY GL DLR R I+ + ++D LR+LR RF G N D + Sbjct: 158 LHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDPLRLLRGVRFVGQLGALNFSLDESIT 217 Query: 190 SIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 S L++L S ER+ E K++ A +P I ++ I + + L Sbjct: 218 SCVDDSLLQVLQQKVSRERVGKEFVKMMAAAHPERCIALLHGMHILQHVLL 268 >gi|254482604|ref|ZP_05095843.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214037295|gb|EEB77963.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 432 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 27/218 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + ++S L ++ +VGGAVRD L+ + +D DIAT P+ V +F + R+++ Sbjct: 21 LKVMSRLRSQGHQAYLVGGAVRDLLLGSNPKDFDIATDATPEEVHGLFRNSRIIGRRFRI 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA----KVVFTRD-----WKADSLRRD 121 + I++ + + + S T G ++ K + RD + D++RRD Sbjct: 81 VHVRFGREIIEVTTFRGHHEGGNEASP-ATGGNHSRQSDKGLLLRDNVYGTLEEDAVRRD 139 Query: 122 FTINALYADQQGK--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 T+NALY D GK V D+V GL DL R I IG+ R ED +R+LR RF A Sbjct: 140 LTVNALYYD-SGKFEVFDHVNGLTDLEKRQICIIGEPAVRYREDPVRMLRTVRFAAKLNF 198 Query: 179 --EKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLL 213 EKN +I A L+ + S R++ E KL Sbjct: 199 DIEKNT-----AKAIPACAALLREIPSARLFDEFLKLF 231 >gi|191172534|ref|ZP_03034074.1| multifunctional CCA protein [Escherichia coli F11] gi|300977454|ref|ZP_07173917.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 200-1] gi|190907202|gb|EDV66801.1| multifunctional CCA protein [Escherichia coli F11] gi|300308312|gb|EFJ62832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 200-1] gi|324011997|gb|EGB81216.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 60-1] Length = 412 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 151/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|226328934|ref|ZP_03804452.1| hypothetical protein PROPEN_02836 [Proteus penneri ATCC 35198] gi|225202120|gb|EEG84474.1| hypothetical protein PROPEN_02836 [Proteus penneri ATCC 35198] Length = 473 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 19/215 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F +R Sbjct: 47 NALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEDVRRLFRNSRL----V 102 Query: 74 SISYGTIKIICRKKYFDITTLR--------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + I+ + ++ T R SD + + RD + D++RR Sbjct: 103 GRRFRLAHIMFGPEVIEVATFRGSHEDHEVSDNNQSQQAQSGMLLRDNIFGSIEEDAIRR 162 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N+LY V DYVGGL DL+ I+ IGD R ED +R+LR R FA + Sbjct: 163 DFTLNSLYYGVDDFAVRDYVGGLADLKAGIIRLIGDPETRYREDPVRMLRAIR-FASKLD 221 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 I + + L+ + S R++ E KLL+ Sbjct: 222 MQIAPETAEPISRLAPLLRNIPSARLFEESLKLLQ 256 >gi|289676155|ref|ZP_06497045.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. syringae FF5] Length = 298 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF + Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFASRYAGYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G KE+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALKELMPEVEAL 213 >gi|156932580|ref|YP_001436496.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Cronobacter sakazakii ATCC BAA-894] gi|166233853|sp|A7MJU1|CCA_ENTS8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|156530834|gb|ABU75660.1| hypothetical protein ESA_00362 [Cronobacter sakazakii ATCC BAA-894] Length = 415 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P ++ + + K P + T + Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPAEMLALGYQQVGKDFPVFLHPQTHEEYALA 61 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + T +S G + D RRD TINA+ D G+ ID G +DL+ Sbjct: 62 R----TERKSGQGYTGFTCYAAPDVTLEQDLQRRDLTINAIAQDDSGEFIDPYHGRDDLK 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A + ED LR+LR RF A Y ++ L+ + L+ L++ Sbjct: 118 ARLLRHVSPAFN---EDPLRVLRVARFAARYAHLGFRIAPETLSLMREMAENGELEHLTA 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E L +NP + ++ G K +F +V ++ Sbjct: 175 ERVWKETESALTTRNPQIYFLMLHECGALKVLFPEVDKL 213 >gi|26249637|ref|NP_755677.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli CFT073] gi|227887779|ref|ZP_04005584.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 83972] gi|300973244|ref|ZP_07172083.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 45-1] gi|301048108|ref|ZP_07195146.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 185-1] gi|73619769|sp|Q8CXX6|CCA_ECOL6 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|26110065|gb|AAN82251.1|AE016767_11 tRNA nucleotidyltransferase [Escherichia coli CFT073] gi|227835175|gb|EEJ45641.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 83972] gi|300300028|gb|EFJ56413.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 185-1] gi|300410824|gb|EFJ94362.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 45-1] gi|307555163|gb|ADN47938.1| multifunctional CCA protein [Escherichia coli ABU 83972] gi|315295022|gb|EFU54359.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 153-1] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 151/354 (42%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEILDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|238796953|ref|ZP_04640457.1| Phosphatase [Yersinia mollaretii ATCC 43969] gi|238719213|gb|EEQ11025.1| Phosphatase [Yersinia mollaretii ATCC 43969] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 14/197 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+NL V + D + P++++ + K P + + + Sbjct: 2 KVYLVGGAVRDNLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPV-----FLHPVSHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ G++ID G DL Sbjct: 57 EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSDDGELIDPYHGRQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILS 201 +N+ ++ + +A ED LR+LR RF FAH G ++ L+A++ L L+ Sbjct: 117 KNKVLRHVSEA---FGEDPLRVLRVARFAARFAHLGFSVAPETQSLMAAMARSGELSALT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E K L+ ++P Sbjct: 174 PERVWKETEKALKTQSP 190 >gi|291284435|ref|YP_003501253.1| TRNA nucleotidyltransferase [Escherichia coli O55:H7 str. CB9615] gi|209759338|gb|ACI77981.1| tRNA nucleotidyl transferase [Escherichia coli] gi|209759344|gb|ACI77984.1| tRNA nucleotidyl transferase [Escherichia coli] gi|290764308|gb|ADD58269.1| TRNA nucleotidyltransferase [Escherichia coli O55:H7 str. CB9615] gi|320645427|gb|EFX14436.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H- str. 493-89] gi|320650738|gb|EFX19195.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H- str. H 2687] gi|320656116|gb|EFX24028.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661806|gb|EFX29214.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O55:H7 str. USDA 5905] gi|320666957|gb|EFX33933.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. LSU-61] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|15803598|ref|NP_289631.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 EDL933] gi|15833193|ref|NP_311966.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. Sakai] gi|168754024|ref|ZP_02779031.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4401] gi|168760215|ref|ZP_02785222.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4501] gi|168767077|ref|ZP_02792084.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4486] gi|168773289|ref|ZP_02798296.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4196] gi|168781930|ref|ZP_02806937.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4076] gi|168785928|ref|ZP_02810935.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC869] gi|168797645|ref|ZP_02822652.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC508] gi|195937200|ref|ZP_03082582.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. EC4024] gi|208808678|ref|ZP_03251015.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4206] gi|208814145|ref|ZP_03255474.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4045] gi|208820792|ref|ZP_03261112.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4042] gi|209396575|ref|YP_002272529.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4115] gi|217327265|ref|ZP_03443348.1| multifunctional CCA protein [Escherichia coli O157:H7 str. TW14588] gi|254795007|ref|YP_003079844.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. TW14359] gi|261228068|ref|ZP_05942349.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Escherichia coli O157:H7 str. FRIK2000] gi|261254924|ref|ZP_05947457.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Escherichia coli O157:H7 str. FRIK966] gi|73619767|sp|Q8XBL4|CCA_ECO57 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702048|sp|B5YR96|CCA_ECO5E RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|12517635|gb|AAG58190.1|AE005535_2 tRNA nucleotidyl transferase [Escherichia coli O157:H7 str. EDL933] gi|13363412|dbj|BAB37362.1| tRNA nucleotidyl transferase [Escherichia coli O157:H7 str. Sakai] gi|187770782|gb|EDU34626.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4196] gi|189000523|gb|EDU69509.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4076] gi|189358420|gb|EDU76839.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4401] gi|189363839|gb|EDU82258.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4486] gi|189369210|gb|EDU87626.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4501] gi|189374110|gb|EDU92526.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC869] gi|189379862|gb|EDU98278.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC508] gi|208728479|gb|EDZ78080.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4206] gi|208735422|gb|EDZ84109.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4045] gi|208740915|gb|EDZ88597.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4042] gi|209157975|gb|ACI35408.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4115] gi|209759340|gb|ACI77982.1| tRNA nucleotidyl transferase [Escherichia coli] gi|209759342|gb|ACI77983.1| tRNA nucleotidyl transferase [Escherichia coli] gi|209759346|gb|ACI77985.1| tRNA nucleotidyl transferase [Escherichia coli] gi|217319632|gb|EEC28057.1| multifunctional CCA protein [Escherichia coli O157:H7 str. TW14588] gi|254594407|gb|ACT73768.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Escherichia coli O157:H7 str. TW14359] gi|320189407|gb|EFW64066.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320640129|gb|EFX09701.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. G5101] gi|326337759|gb|EGD61593.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. 1125] gi|326347324|gb|EGD71049.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. 1044] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFTTL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|269137819|ref|YP_003294519.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda EIB202] gi|267983479|gb|ACY83308.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda EIB202] gi|304557874|gb|ADM40538.1| tRNA nucleotidyltransferase [Edwardsiella tarda FL6-60] Length = 414 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 42/211 (19%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMR-----------IF----SKTRYKVI 71 K+ +VGGAVRD + L QD D + P ++ +F SK Y + Sbjct: 2 KTYLVGGAVRDKYLQLPTQDRDWVVVGATPQALLAQGYQQVGKDFPVFLHPRSKEEYALA 61 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T G + Y +T + +T + D LRRD TINA+ D Sbjct: 62 RTERKAG-------QGYTGFSTYFAPDVT------------LEQDLLRRDLTINAMAEDD 102 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGL 187 +G++ID GGL DLR R ++ + +A +ED LR+LR RF A + + + L Sbjct: 103 EGQLIDPYGGLQDLRQRQLRHVSEA---FVEDPLRVLRVARFAARFAPLGFQVAAPTLAL 159 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + + + L L+ ER+W E K L P Sbjct: 160 MQRMSQRGELAHLTPERVWLETEKALSGPAP 190 >gi|113461167|ref|YP_719236.1| poly(A) polymerase [Haemophilus somnus 129PT] gi|112823210|gb|ABI25299.1| poly(A) polymerase [Haemophilus somnus 129PT] Length = 457 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 22/253 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------R 67 + ++++ L++ ++ IVGG +RD L+ +D D+AT P++V IF + R Sbjct: 40 NALSVVEKLHRNGYEAYIVGGCLRDLLLGKKPKDFDVATNAKPEQVQAIFQRQCRLVGRR 99 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSD-------LITDGRYAKVVFTRDWKADSLR 119 +++ I++ R + D R L+ D Y + + D+ R Sbjct: 100 FRLAHIMFGRDIIEVATFRAAHSDNHNERQAKQNNAGMLLRDNVYGTI------EQDAER 153 Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NA Y + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 154 RDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSIRFMAKL- 212 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +D K LK + R++ E KLL+A + + G+F ++F + Sbjct: 213 DMFLDKPSQEPIKKMAHLLKNIPPARLFDESVKLLQAGYGIKTYQLLREYGLFDQLFPTL 272 Query: 239 QEISLDQLSQVIE 251 D+ E Sbjct: 273 TPYFTDKADSFAE 285 >gi|114567328|ref|YP_754482.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338263|gb|ABI69111.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 437 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 103/433 (23%), Positives = 198/433 (45%), Gaps = 59/433 (13%) Query: 17 NILSLLNKGED---KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIP 72 N+ ++LNK ++ I G +RD L+ + DI T LP+ + IF + + IP Sbjct: 8 NVQTILNKLHSNGYQAYIYGACIRDYLLGKEPINWDITTNALPNNTVVIFDENEGFTSIP 67 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + YG + + + + + T R+ G + F D D L +DFT+N++ ++Q Sbjct: 68 SVEDYGIVTLHFKGESCQVNTFRT-----GEARR--FADDISEDLLHKDFTMNSIAYNEQ 120 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D G+ D+ R I+ + + ++ ED RILR RF + G K I+++ L+ ++K Sbjct: 121 AGIVDPYNGVGDIEKRLIRCAQNPYEQMQEDSARILRAVRFESQLGFK-IEAE-LLQAMK 178 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-VQEISLDQLSQVIE 251 K S R+ +E +LL ++ P +I + G+ + + + + I D S + Sbjct: 179 DLKDTVPASGSRVRNEFIQLLLSEQPSRSIRRLLELGLLERLIPELMPAIGFDTHSSYHD 238 Query: 252 AEQVFEWKIDSL--------LRFIVLISWQDKKSILSMAKK--------FSLPREIRYFL 295 + VFE + L LR L+ DK + L++ + S E+ + Sbjct: 239 KD-VFEHSLVVLDNTEPNLTLRLAALLHDIDKPNCLTIDEDGEGHCYGHASGGSEMAQAI 297 Query: 296 ISFFNCNFNQKT-----------------LSIPEIKKLFYLYGDKVMIAKLKIFLA-LHY 337 + NF++KT +S IK+L G + ++ LA + Sbjct: 298 LGRL--NFDRKTIQAVSSLIKEHMNDFGNISDLSIKRLIRRVGPDNIDRLFELQLADIKG 355 Query: 338 NNLTHQDTCFILQVLS---DIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 + L+ +D I ++ + +++ ++PL ++G D++ G PPGKK+G + + Sbjct: 356 SALSSRDPERITKIRNKCFEVLSRREPLTVHDLDISGYDLLSLGYPPGKKIGETMDYLLD 415 Query: 391 EWINSSFQLSQED 403 + I++ L+Q D Sbjct: 416 QVIDNP-SLNQRD 427 >gi|320195218|gb|EFW69847.1| tRNA nucleotidyltransferase [Escherichia coli WV_060327] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 151/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDNNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|299769308|ref|YP_003731334.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter sp. DR1] gi|298699396|gb|ADI89961.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter sp. DR1] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 18/191 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDSLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ GK+ D GG DL Sbjct: 60 LARTERKS--GKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQTDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+T++ + DA ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKTLRHVSDA---FAEDPLRVLRVARFAARYSAYGFHIAPETLQLMQTMAESGELDALTP 174 Query: 203 ERIWSEINKLL 213 ER+W E ++ L Sbjct: 175 ERVWKETSRAL 185 >gi|145221439|ref|YP_001132117.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] gi|145213925|gb|ABP43329.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] Length = 497 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 23/228 (10%) Query: 31 IVGGAVRDSLM---NLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGG VRD+L+ + D+D T P+++ R + T I +GT+ + + Sbjct: 52 LVGGPVRDALLGRFDPDKNDLDFTTDARPEQMQRFLRGWGDALWDTGIEFGTLGVGKGED 111 Query: 88 YFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 +ITT R+D R +V F + D +RRDFT+NA+ AD + +D + GL Sbjct: 112 RLEITTFRADTYDKVSRNPEVRFGDNLADDLVRRDFTVNAMAVRVTADGPTEFLDPLDGL 171 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 + LR+ + +D LR+LR RF + G + + ++ L+ +SS Sbjct: 172 SALRDGVLDTPAAPEVSFGDDPLRMLRAARFVSQL--------GFTVAPRVRRALEEMSS 223 Query: 203 -------ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ER+ +E++KLL +P+ + M + G+ + + +V + + Sbjct: 224 QLSRITAERVAAELDKLLLGADPVAGLDLMVDTGLGEVVLPEVGAMRM 271 >gi|157155570|ref|YP_001464516.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli E24377A] gi|191168809|ref|ZP_03030584.1| multifunctional CCA protein [Escherichia coli B7A] gi|218696761|ref|YP_002404428.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 55989] gi|300923716|ref|ZP_07139742.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 182-1] gi|301325594|ref|ZP_07219060.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 78-1] gi|307310319|ref|ZP_07589967.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli W] gi|309793620|ref|ZP_07688046.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 145-7] gi|331669920|ref|ZP_08370765.1| multifunctional CCA protein [Escherichia coli TA271] gi|167006455|sp|A7ZRT7|CCA_ECO24 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|254813692|sp|B7LGZ2|CCA_ECO55 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157077600|gb|ABV17308.1| multifunctional CCA protein [Escherichia coli E24377A] gi|190901138|gb|EDV60912.1| multifunctional CCA protein [Escherichia coli B7A] gi|218353493|emb|CAU99605.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli 55989] gi|300420030|gb|EFK03341.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 182-1] gi|300847566|gb|EFK75326.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 78-1] gi|306909214|gb|EFN39709.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli W] gi|308122577|gb|EFO59839.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 145-7] gi|315062364|gb|ADT76691.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli W] gi|323377048|gb|ADX49316.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli KO11] gi|323946764|gb|EGB42783.1| poly A polymerase head domain-containing protein [Escherichia coli H120] gi|331062833|gb|EGI34747.1| multifunctional CCA protein [Escherichia coli TA271] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|82545310|ref|YP_409257.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella boydii Sb227] gi|187731005|ref|YP_001881819.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella boydii CDC 3083-94] gi|193062212|ref|ZP_03043308.1| multifunctional CCA protein [Escherichia coli E22] gi|193067390|ref|ZP_03048358.1| multifunctional CCA protein [Escherichia coli E110019] gi|194426481|ref|ZP_03059036.1| multifunctional CCA protein [Escherichia coli B171] gi|218555626|ref|YP_002388539.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli IAI1] gi|256019028|ref|ZP_05432893.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella sp. D9] gi|260845810|ref|YP_003223588.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O103:H2 str. 12009] gi|293449394|ref|ZP_06663815.1| multifunctional CCA protein [Escherichia coli B088] gi|300818821|ref|ZP_07099027.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 107-1] gi|300821649|ref|ZP_07101795.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 119-7] gi|331679132|ref|ZP_08379804.1| multifunctional CCA protein [Escherichia coli H591] gi|332280128|ref|ZP_08392541.1| tRNA nucleotidyl transferase [Shigella sp. D9] gi|123558762|sp|Q31WX9|CCA_SHIBS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702050|sp|B7LZK6|CCA_ECO8A RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702086|sp|B2U1G0|CCA_SHIB3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|81246721|gb|ABB67429.1| tRNA nucleotidyl transferase [Shigella boydii Sb227] gi|187427997|gb|ACD07271.1| multifunctional CCA protein [Shigella boydii CDC 3083-94] gi|192932432|gb|EDV85030.1| multifunctional CCA protein [Escherichia coli E22] gi|192959347|gb|EDV89782.1| multifunctional CCA protein [Escherichia coli E110019] gi|194415789|gb|EDX32056.1| multifunctional CCA protein [Escherichia coli B171] gi|218362394|emb|CAR00018.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli IAI1] gi|257760957|dbj|BAI32454.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O103:H2 str. 12009] gi|291322484|gb|EFE61913.1| multifunctional CCA protein [Escherichia coli B088] gi|300525787|gb|EFK46856.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 119-7] gi|300528606|gb|EFK49668.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 107-1] gi|320174938|gb|EFW50055.1| tRNA nucleotidyltransferase [Shigella dysenteriae CDC 74-1112] gi|320179303|gb|EFW54261.1| tRNA nucleotidyltransferase [Shigella boydii ATCC 9905] gi|320187121|gb|EFW61824.1| tRNA nucleotidyltransferase [Shigella flexneri CDC 796-83] gi|323163106|gb|EFZ48939.1| poly A polymerase head domain protein [Escherichia coli E128010] gi|323173699|gb|EFZ59328.1| poly A polymerase head domain protein [Escherichia coli LT-68] gi|323183639|gb|EFZ69036.1| poly A polymerase head domain protein [Escherichia coli 1357] gi|324119664|gb|EGC13545.1| poly A polymerase head domain-containing protein [Escherichia coli E1167] gi|331073197|gb|EGI44520.1| multifunctional CCA protein [Escherichia coli H591] gi|332086714|gb|EGI91854.1| poly A polymerase head domain protein [Shigella boydii 5216-82] gi|332091836|gb|EGI96914.1| poly A polymerase head domain protein [Shigella boydii 3594-74] gi|332102480|gb|EGJ05826.1| tRNA nucleotidyl transferase [Shigella sp. D9] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|167854734|ref|ZP_02477513.1| putative poly(A) polymerase [Haemophilus parasuis 29755] gi|167854148|gb|EDS25383.1| putative poly(A) polymerase [Haemophilus parasuis 29755] Length = 477 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 119/235 (50%), Gaps = 16/235 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S+ I I++ L K ++ +VGG +RD L+ +D DIAT P+ + +IF + + ++I Sbjct: 51 SNTIAIINKLQKNGYEAYMVGGCIRDLLLGQKAKDFDIATNARPEEIQKIFGR-QCRLI- 108 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRD 121 + I+ ++ +++ T R+D ++ + +K + RD + D+ RRD Sbjct: 109 -GRRFRLAHIVFGREIYEVATFRADHHSNATEKMSKTSEAGMLLRDNVYGTLREDAERRD 167 Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 F++NA Y D +I D+ G++DL+ + IGD R ED +R+LR RF A + Sbjct: 168 FSVNAFYYDVSHNLIYDFFNGIDDLKAGKLALIGDPVTRYQEDPVRMLRAIRFMAKL-DM 226 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D K LK + + R++ E KLL++ + G+F+++F Sbjct: 227 FLDKASDEPIRKMAVLLKNIPAARLFDESLKLLQSGYGHKTYELLRKYGLFEQLF 281 >gi|300724874|ref|YP_003714199.1| tRNA nucleotidyl transferase [Xenorhabdus nematophila ATCC 19061] gi|297631416|emb|CBJ92113.1| tRNA nucleotidyl transferase [Xenorhabdus nematophila ATCC 19061] Length = 390 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 12/193 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V + D + P+ ++ + K P + T + + Sbjct: 5 LVGGAVRDQLLELPVTERDWVVVGGNPEALLSQGYQQVGKDFPVFLHPETHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D LRRD TINA+ +G+VID G++DL NRT Sbjct: 63 --TERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQTAEGEVIDPYHGVDDLNNRT 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF F+H G ++ L+ I A L L+ ER+ Sbjct: 121 LRHVSAA---FSEDPLRVLRLARFAARFSHLGFSIAPETQSLITEIAASGELSSLTPERV 177 Query: 206 WSEINKLLEAKNP 218 W E K L +++P Sbjct: 178 WRETEKALTSQSP 190 >gi|238918485|ref|YP_002931999.1| hypothetical protein NT01EI_0531 [Edwardsiella ictaluri 93-146] gi|259585842|sp|C5BHG5|CCA_EDWI9 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|238868053|gb|ACR67764.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 414 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K+ +VGGAVRD + L QD D T+L ++ + P S + Sbjct: 2 KTYLVGGAVRDKYLQLPTQDRDWVVVGAAPQTLLAQGYQQVGKDFPVFLHPRSKEEYALA 61 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 RK T + D V +D LRRD TINA+ D +G++ID GG Sbjct: 62 RTERKAGQGYTGFSTYFAPD-----VTLEQDL----LRRDLTINAMAEDDEGQLIDPYGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGL 197 L DL+ R ++ + +A +ED LR+LR RF A + E + L+ + + L Sbjct: 113 LQDLQQRQLRHVSEA---FVEDPLRVLRVARFAARFAPLGFEVAAPTLALMQQMSQQGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 L+ ER+W E K L P Sbjct: 170 AHLTPERVWLETEKALSGPVP 190 >gi|331648857|ref|ZP_08349945.1| multifunctional CCA protein [Escherichia coli M605] gi|330909122|gb|EGH37636.1| tRNA nucleotidyltransferase [Escherichia coli AA86] gi|331042604|gb|EGI14746.1| multifunctional CCA protein [Escherichia coli M605] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 151/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|220914656|ref|YP_002489965.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arthrobacter chlorophenolicus A6] gi|219861534|gb|ACL41876.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arthrobacter chlorophenolicus A6] Length = 502 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 26/264 (9%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + + D+D T PD+ + + K ++GTI + RK F Sbjct: 36 SLVGGPVRDLFLGRTSPDLDFTTDATPDQTVALIKKWADNFWEIGRAFGTIGM--RKAGF 93 Query: 90 --DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDL 145 +ITT R++ D R V F D LRRDFTINA+ +++D GG+ DL Sbjct: 94 QIEITTYRAEAYDPDSRKPVVAFGSSLTDDLLRRDFTINAMALKLPTMELVDPFGGVRDL 153 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + G +D LR++R RF + G ++ D A + + I+S+ERI Sbjct: 154 HASVLATPGSPEASFSDDPLRMMRAARFASQLG-VSVHDDVRKAMTGMAERITIISAERI 212 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS------------QVIEAE 253 E+ KL+ P + + + G+ + + +V + L+ QV+E Sbjct: 213 RDELVKLVCGARPRVGVDLLVDTGLAEFVLPEVSALRLESDEHHRHKDVYQHSLQVLEQA 272 Query: 254 QVFEWKIDS-------LLRFIVLI 270 E D +LRF L+ Sbjct: 273 AALETDADGPVPGPDFVLRFAALM 296 >gi|51588364|emb|CAH19972.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 32953] Length = 437 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 21/236 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 21 LKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL----VGR 76 Query: 76 SYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD + + + RD + D+ RR Sbjct: 77 RFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRR 136 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A + Sbjct: 137 DFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL-D 195 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 196 MSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 251 >gi|170717755|ref|YP_001784822.1| poly(A) polymerase [Haemophilus somnus 2336] gi|168825884|gb|ACA31255.1| poly(A) polymerase [Haemophilus somnus 2336] Length = 457 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 22/253 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------R 67 + ++++ L++ ++ IVGG +RD L+ +D D+AT P++V IF + R Sbjct: 40 NALSVVEKLHRNGYEAYIVGGCLRDLLLGKKPKDFDVATNAKPEQVQAIFQRQCRLVGRR 99 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSD-------LITDGRYAKVVFTRDWKADSLR 119 +++ I++ R + D R L+ D Y + + D+ R Sbjct: 100 FRLAHIMFGRDIIEVATFRAAHTDNHNERQAKQNNAGMLLRDNVYGTI------EQDAER 153 Query: 120 RDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NA Y + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 154 RDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSIRFMAKL- 212 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +D K LK + R++ E KLL+A + + G+F ++F + Sbjct: 213 DMFLDKPSQEPIKKMAHLLKNIPPARLFDESVKLLQAGYGIKTYQLLREYGLFDQLFPTL 272 Query: 239 QEISLDQLSQVIE 251 D+ E Sbjct: 273 TSYFTDKADSFAE 285 >gi|218691361|ref|YP_002399573.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli ED1a] gi|254813693|sp|B7N0K6|CCA_ECO81 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|218428925|emb|CAR09874.2| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli ED1a] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 151/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|285017637|ref|YP_003375348.1| multifunctional cca protein [includes: cca-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA cca-pyrophosphorylase) (tRNA-nt); 2'-nucleotidase; 2', 3'-cyclic phosphodiesterase ; phosphatase] [Xanthomonas albilineans GPE PC73] gi|283472855|emb|CBA15360.1| hypothetical multifunctional cca protein [includes: cca-adding enzyme (trna nucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trna cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase; 2', 3'-cyclic phosphodiesterase ; phosphatase] [Xanthomonas albilineans] Length = 417 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 21/201 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+ L D D + PD+++ + K + P + + + Sbjct: 2 KTYLVGGAVRDALLGLPPGDRDWVVVGATPDQLLALGYKQVGRDFPVFLHPHSGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D RRDFTINA+ D+ G+++D GG Sbjct: 57 ---EYALARTERKSGRGYHGFVIQADPSVTLEEDLQRRDFTINAIARDEDDGRLLDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + DL+ R ++ +G A ED LR+LR RF A D+ L+ ++ A L Sbjct: 114 VRDLQRRVLRHVGPA---FGEDPLRVLRAARFMARLAPLGFQIAPDTMALMRAMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L ER+W E+ + L + P Sbjct: 171 EALVPERVWQELRRSLASAQP 191 >gi|152980497|ref|YP_001354880.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille] gi|166233860|sp|A6T2Y3|CCA_JANMA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|151280574|gb|ABR88984.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille] Length = 416 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 24/252 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ IVGGAVRD L+ ++V+D D + P+ ++ K P + K Sbjct: 2 KTYIVGGAVRDELLGVAVKDRDYVVVGATPEAMVAQGYTPVGKDFPV--------FLHPK 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y VF D + D +RRD TINA+ D+ G ++D GG Sbjct: 54 THAEYALARTERKTAPGYKGFVFHTDASVTLEEDLIRRDLTINAMAQDEDGSIVDPFGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKIL 200 DL R + + A ED +RILR RF A + E + +++ L+ + + L Sbjct: 114 RDLELRIFRHVSPA---FAEDPVRILRIARFAARFPEFTVAAETNTLMQDMVTAGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ + L P + + G + I + LD L V + Q + +I Sbjct: 171 VPERVWQELARGLMEVRPSRMFEVLRDCGALQRILPE-----LDVLWGVPQPAQ-YHPEI 224 Query: 261 DSLLRFIVLISW 272 D+ + +++I + Sbjct: 225 DTGVHIMLVIDY 236 >gi|189462187|ref|ZP_03010972.1| hypothetical protein BACCOP_02869 [Bacteroides coprocola DSM 17136] gi|189431090|gb|EDV00075.1| hypothetical protein BACCOP_02869 [Bacteroides coprocola DSM 17136] Length = 501 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD +N +DID+ + F + + S+ ++GT ++ Sbjct: 57 VVGGYVRDIFLNRPSKDIDVVVVGSGIEIAEAFGRKLGRGAHVSVFKNFGTAQVKYHDLE 116 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINAL + G+++D GGL+D Sbjct: 117 VEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINALAVCLNKSRYGELVDPFGGLDD 176 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ RTI+ D +D LR++R RF I+ + A + ++ +KI+S ER Sbjct: 177 LKERTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FFIEDETFDALERNRERIKIISRER 235 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK+L + P V + G+ + IF Sbjct: 236 IADELNKILLSPVPSKGFVDLDRCGLLELIF 266 >gi|149278885|ref|ZP_01885020.1| tRNA nucleotidyltransferase [Pedobacter sp. BAL39] gi|149230504|gb|EDM35888.1| tRNA nucleotidyltransferase [Pedobacter sp. BAL39] Length = 468 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 109/218 (50%), Gaps = 13/218 (5%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS----YGTIK 81 + ++ ++GG VRD ++ +DIDI +L + + F++ + + T ++ +GT Sbjct: 21 QTEAYVIGGYVRDIFLSRPSKDIDI--VVLGNGID--FAEAAGRQLRTKVAVFKNFGTAM 76 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVID 137 + + + R + +V + D LRRDFTINAL AD ++D Sbjct: 77 LKTQDLEIEFVGARKESYRADSRKPIVENGTIQDDQLRRDFTINALAISLNADNYAALVD 136 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 G+ DL+N+ I+ D +D LR++R RF A G +ID + A K K+ + Sbjct: 137 PFDGITDLKNKLIRTPLDPEITFSDDPLRMMRAIRFAAQLG-FSIDHQAIEAIKKQKERI 195 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I+S ERI E+NK++ +K P ++++ G+ IF Sbjct: 196 GIVSKERITDELNKIILSKLPSVGFKYLFDTGLLHLIF 233 >gi|306816590|ref|ZP_07450722.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli NC101] gi|331684707|ref|ZP_08385299.1| multifunctional CCA protein [Escherichia coli H299] gi|305850155|gb|EFM50614.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli NC101] gi|331078322|gb|EGI49528.1| multifunctional CCA protein [Escherichia coli H299] Length = 412 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 151/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|16272037|ref|NP_438236.1| polyA polymerase [Haemophilus influenzae Rd KW20] gi|1172043|sp|P44439|PCNB_HAEIN RecName: Full=Probable poly(A) polymerase; Short=PAP gi|1573011|gb|AAC21741.1| poly(A) polymerase (pcnB) [Haemophilus influenzae Rd KW20] Length = 452 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|319896476|ref|YP_004134669.1| poly polymerase [Haemophilus influenzae F3031] gi|317431978|emb|CBY80326.1| probable poly polymerase [Haemophilus influenzae F3031] Length = 452 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|332162994|ref|YP_004299571.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667224|gb|ADZ43868.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862251|emb|CBX72412.1| multifunctional CCA protein [Yersinia enterocolitica W22703] Length = 412 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL + + D + P++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPITEQDWVVVGATPEQLLAQGYQQVGKDFPV-----FLHPVTHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ +G++ D G D+ R Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQQDIEKR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF FAH G ++ L+A++ L L+ ER Sbjct: 120 VLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELSALTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E K L+ ++P + + G +F +++ + Sbjct: 177 VWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERL 213 >gi|225075340|ref|ZP_03718539.1| hypothetical protein NEIFLAOT_00344 [Neisseria flavescens NRL30031/H210] gi|224953515|gb|EEG34724.1| hypothetical protein NEIFLAOT_00344 [Neisseria flavescens NRL30031/H210] Length = 420 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 120/270 (44%), Gaps = 34/270 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K+ +VGGAVRD L+ L V+D D A T+L + + P S Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVVIGADAQTMLAQGYQPVGKDFPVFLHPDS------- 59 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D G +ID Sbjct: 60 ------HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGTIID 113 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKG 196 GG DL ++ + A ED +RILR RF A YG + D L+ + Sbjct: 114 PFGGQQDLAAGILRHVSPA---FAEDPVRILRISRFAARYGFQIADETMSLMRQMVENGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L +ER+W E+ K L KNP I + G K + + LD L V + + Sbjct: 171 ADALVAERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPE-----LDALFGVPQRAD-Y 224 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 +IDS + ++++ + + LS+A++++ Sbjct: 225 HPEIDSGIHTLMVVQRAAEMN-LSLAERYA 253 >gi|161723240|ref|YP_096745.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|73619789|sp|Q5ZRX9|CCA_LEGPH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase Length = 410 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T +++Y Sbjct: 5 LVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGRDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVV-FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G Y + F+ + D RRD TINA+ D+QG +ID G DL Sbjct: 60 LARTERKS--APGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSS 202 + ++ + A +ED +R+LR RF F H G + + L+ K+G L L Sbjct: 118 EKLLRHVSSA---FVEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELAHLIP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E K LE KNP I+ + + + I ++ + Sbjct: 175 ERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSL 213 >gi|229491197|ref|ZP_04385025.1| tRNA adenylyltransferase [Rhodococcus erythropolis SK121] gi|229321935|gb|EEN87728.1| tRNA adenylyltransferase [Rhodococcus erythropolis SK121] Length = 483 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 6/219 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P++V + K T I +GTI I + + Sbjct: 45 LVGGSVRDAILGRFSGDLDFTTDARPEKVQALLKGWVDKQWDTGIEFGTISAIKHGQEIE 104 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R V + D +RRDFT+NA+ AD +D + G++ L Sbjct: 105 ITTFRADAYDRVSRNPIVEYGTTLADDLVRRDFTVNAMAMKIGADGSYTFVDPLNGMDAL 164 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + + +D LR+LR RF + G +++ A + ++ +++ER+ Sbjct: 165 LAGELDTPSAPENSFNDDPLRMLRAARFVSQLG-FTLNNRVFEAIKEMASQIERITAERV 223 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+NKL+ P++ I M + G+ + +V ++ L+ Sbjct: 224 QVELNKLMLGMYPVDGINMMVDSGLAAYVLPEVPQMKLE 262 >gi|237729977|ref|ZP_04560458.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Citrobacter sp. 30_2] gi|226908583|gb|EEH94501.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Citrobacter sp. 30_2] Length = 411 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L ++D D + P ++ + + P + T R++Y Sbjct: 5 LVGGAVRDALLGLPIKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQT-----REEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G +AD RRD TINA+ D G++ID G +DL NR Sbjct: 60 LARTERKSGSGYTGFTCHAAADVTLEADLQRRDLTINAIARDDDGEIIDPYNGRDDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSSER 204 ++ + A ED LR+LR RF +AH G + D L+ + A L+ L+ ER Sbjct: 120 LLRHVSSA---FSEDPLRVLRVARFAARYAHLGFRIADETMTLMRDMTAAGELEHLTPER 176 Query: 205 IWSEINKLLEAKNP 218 +W E L +NP Sbjct: 177 VWKETEGALTTRNP 190 >gi|293390232|ref|ZP_06634566.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950766|gb|EFE00885.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 488 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 28/238 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + ++ L + ++ +VGG +RD L+ +D D+AT P+++ IF + V Sbjct: 70 LTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQRQCRLV---GR 126 Query: 76 SYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKADSL 118 + ++ ++ ++ T R+ L+ D Y + + D+ Sbjct: 127 RFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSEEGMLLRDNVYGTL------EQDAE 180 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDF++NALY + Q + DY G++DL+N ++ IGD R ED +R+LR RF A Sbjct: 181 RRDFSVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 240 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E +D + LK + R++ E KLL+ + + + G+F+++F Sbjct: 241 -EMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQYGLFEQLF 297 >gi|167045541|gb|ABZ10193.1| putative Poly A polymerase family protein [uncultured marine microorganism HF4000_APKG10H12] Length = 453 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 30/278 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D+D + ++ L + ++ +VGG VRD L++ +D D+ T+ P ++ R+F Sbjct: 20 DNDALKVIYRLQQHNFETYLVGGGVRDLLLDRRPKDFDLGTSAHPQQIKRLFRNCWIIGR 79 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITT-------------LRSDLITDG---RYAKVVFT 110 R+++ T+++ +K T + G ++V Sbjct: 80 RFRLAHIKFGRKTLEVATFRKQVPPETDTERAAREAERERAKQKATAAGDRQTRTRLVIP 139 Query: 111 RD-----WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 RD + D+ RRDFTINAL+ D + ++DYV G+ D+ RTI+ IGD + R +ED Sbjct: 140 RDNTFGTAEEDAFRRDFTINALFYDASTRSILDYVDGMRDIGRRTIRSIGDPNERFIEDP 199 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE-RIWSEINKLLEAKNPLNAIV 223 +R+LR A + +ID + +I+ +G + SS R+ E+ K+ + I Sbjct: 200 VRMLRAVVLAARL-DLSIDP-AVSTAIRRHRGEIVHSSPARLVEELYKIARSGASERIIH 257 Query: 224 HMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 + + G+ K I ++ D L + + A + + D Sbjct: 258 DLGDAGLLKFIAPELDRARSDALWKSLGALDSYRRRFD 295 >gi|119468921|ref|ZP_01611946.1| tRNA nucleotidyl transferase [Alteromonadales bacterium TW-7] gi|119447573|gb|EAW28840.1| tRNA nucleotidyl transferase [Alteromonadales bacterium TW-7] Length = 417 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 13/209 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N++ +D D M +P + K+ + Sbjct: 10 LVGGAVRDKLLNIASKDNDYVVIGETPSTMESLG-----FLPIGSDFPVYLHPKTKEEYA 64 Query: 91 I--TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 + T +S G + + D RRD TIN++ D+ GK+ID G +DL+N+ Sbjct: 65 LGRTERKSGKGYTGFVVDASPSVTLEEDLARRDLTINSMALDENGKIIDPFNGQHDLQNK 124 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---NIDSDGLVASIKAKKGLKILSSERI 205 ++ H +ED +R+LR RF A YG + + L+ +K K L L ER+ Sbjct: 125 ILRHTT---HAFVEDPVRVLRIARFLARYGSDWQIHPSTYALMRELKNKGELNHLVPERV 181 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 W E K L K+P + GIF EI Sbjct: 182 WLETEKALGEKHPELYFQALDGLGIFPEI 210 >gi|21231215|ref|NP_637132.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768778|ref|YP_243540.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188991892|ref|YP_001903902.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|21112860|gb|AAM41056.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574110|gb|AAY49520.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167733652|emb|CAP51857.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris] Length = 455 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 18/233 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R Sbjct: 41 NALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATSATPEEVKALFRNCRL----I 96 Query: 74 SISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++ ++ ++ T R+++ + +GR + + D++RRDFT N Sbjct: 97 GRRFRLAHVVFGREIIEVATFRANIDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFTCN 156 Query: 126 ALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID- 183 ALY A + V DY GG D++ R +K IGD R ED +R+LR R A N D Sbjct: 157 ALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLAAKL---NFDI 213 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I G L + R++ EI KL + + + + + G+ +F Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALF 266 >gi|162420585|ref|YP_001605569.1| poly(A) polymerase I [Yersinia pestis Angola] gi|165925807|ref|ZP_02221639.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. F1991016] gi|166010184|ref|ZP_02231082.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166214122|ref|ZP_02240157.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398734|ref|ZP_02304258.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420762|ref|ZP_02312515.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423197|ref|ZP_02314950.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229839037|ref|ZP_04459196.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896516|ref|ZP_04511684.1| Poly(A) polymerase [Yersinia pestis Pestoides A] gi|229899602|ref|ZP_04514743.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India 195] gi|229901064|ref|ZP_04516187.1| Poly(A) polymerase [Yersinia pestis Nepal516] gi|294505105|ref|YP_003569167.1| poly(A) polymerase [Yersinia pestis Z176003] gi|115349027|emb|CAL21988.1| poly(A) polymerase [Yersinia pestis CO92] gi|162353400|gb|ABX87348.1| poly(A) polymerase [Yersinia pestis Angola] gi|165922419|gb|EDR39596.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165991091|gb|EDR43392.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166204753|gb|EDR49233.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961568|gb|EDR57589.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051238|gb|EDR62646.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057367|gb|EDR67113.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681789|gb|EEO77882.1| Poly(A) polymerase [Yersinia pestis Nepal516] gi|229687094|gb|EEO79169.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India 195] gi|229695403|gb|EEO85450.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700590|gb|EEO88621.1| Poly(A) polymerase [Yersinia pestis Pestoides A] gi|294355564|gb|ADE65905.1| poly(A) polymerase [Yersinia pestis Z176003] gi|320016600|gb|ADW00172.1| Poly(A) polymerase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 440 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 21/236 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 21 LKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL----VGR 76 Query: 76 SYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD + + + RD + D+ RR Sbjct: 77 RFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRR 136 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A + Sbjct: 137 DFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL-D 195 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 196 MSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 251 >gi|313668356|ref|YP_004048640.1| tRNA nucleotidyltransferase [Neisseria lactamica ST-640] gi|313005818|emb|CBN87272.1| putative tRNA nucleotidyltransferase [Neisseria lactamica 020-06] Length = 417 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 98/217 (45%), Gaps = 17/217 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + M + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFRPVGKDFPVFLHPET------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 -HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 DL ++++ A ED +RILR RF A YG E ++ L+ + L Sbjct: 114 QDLAAGILRYVSPA---FAEDPVRILRTARFAARYGFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E+ K L KNP I + G K + +V Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|145639648|ref|ZP_01795251.1| polyA polymerase [Haemophilus influenzae PittII] gi|145271205|gb|EDK11119.1| polyA polymerase [Haemophilus influenzae PittII] gi|309750618|gb|ADO80602.1| Poly(A) polymerase I [Haemophilus influenzae R2866] Length = 452 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ ++ + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPISELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|313202600|ref|YP_004041257.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Paludibacter propionicigenes WB4] gi|312441916|gb|ADQ78272.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Paludibacter propionicigenes WB4] Length = 478 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 14/239 (5%) Query: 10 FHDSDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATT----ILPDRV-MRIF 63 F ++ I+S + + C ++GG VRD + +DID+ L ++V +++ Sbjct: 13 FLQDNIFKIISEAADEQQQECYVIGGFVRDIFLKRPSKDIDVVVVGSGIALAEKVALKLG 72 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 K + V ++GT ++ + R + +V + D RRDFT Sbjct: 73 KKAKLTVFK---NFGTAQVKLNDLEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFT 129 Query: 124 INALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 INAL D+ G+++D GG+ DL+N I+ + +D LR++R RF A G Sbjct: 130 INALAICLNKDRYGELVDPFGGIEDLKNFVIRTPLNPDITFSDDPLRMMRGIRFSAQLG- 188 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I+++ A ++ K+ ++I+S ERI E+NK++ ++ P + + G+ + IF +V Sbjct: 189 FFIETNTFDAIVRNKERIEIISKERIADELNKIMASRKPSVGFILLEKTGLLELIFPEV 247 >gi|301168656|emb|CBW28247.1| poly(A) polymerase I [Haemophilus influenzae 10810] Length = 452 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|148827216|ref|YP_001291969.1| polyA polymerase [Haemophilus influenzae PittGG] gi|148718458|gb|ABQ99585.1| polyA polymerase [Haemophilus influenzae PittGG] Length = 452 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|324005362|gb|EGB74581.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 57-2] Length = 412 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMIHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|319775006|ref|YP_004137494.1| poly polymerase [Haemophilus influenzae F3047] gi|317449597|emb|CBY85802.1| probable poly polymerase [Haemophilus influenzae F3047] Length = 452 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGRGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|52630057|gb|AAU28798.1| tRNA nucleotidyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 424 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T +++Y Sbjct: 19 LVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGRDFPVFLHPET-----KEEYA 73 Query: 90 DITTLRSDLITDGRYAKVV-FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G Y + F+ + D RRD TINA+ D+QG +ID G DL Sbjct: 74 LARTERKS--APGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQRDLE 131 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSS 202 + ++ + A +ED +R+LR RF F H G + + L+ K+G L L Sbjct: 132 EKLLRHVSSA---FVEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELAHLIP 188 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E K LE KNP I+ + + + I ++ + Sbjct: 189 ERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSL 227 >gi|260857186|ref|YP_003231077.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O26:H11 str. 11368] gi|260869808|ref|YP_003236210.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O111:H- str. 11128] gi|257755835|dbj|BAI27337.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O26:H11 str. 11368] gi|257766164|dbj|BAI37659.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O111:H- str. 11128] gi|323154511|gb|EFZ40711.1| poly A polymerase head domain protein [Escherichia coli EPECa14] gi|323178761|gb|EFZ64337.1| poly A polymerase head domain protein [Escherichia coli 1180] Length = 412 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 152/360 (42%), Gaps = 61/360 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIP------TSISYGTIKII 83 +VGGAVRD+L+ L V+D D + P ++ + + P T Y + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPLTHEEYALARTE 64 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 RK T D V D K RRD TINAL D G++ID GL Sbjct: 65 -RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLG 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKI 199 DL+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ Sbjct: 115 DLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEH 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L+ ER+W E L +NP + + G + +F ++ D L V A + + Sbjct: 172 LTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPE 225 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 226 IDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHG 272 Query: 320 YGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 +G + + +L++ L +++L H + I+++ I W+KP Sbjct: 273 HGPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|148358518|ref|YP_001249725.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Corby] gi|296108394|ref|YP_003620095.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Legionella pneumophila 2300/99 Alcoy] gi|148280291|gb|ABQ54379.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Corby] gi|295650296|gb|ADG26143.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Legionella pneumophila 2300/99 Alcoy] Length = 410 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 26/223 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVI----PTSISYGTIKIICR 85 +VGGAVRD L+ + VQ+ D + P+ ++ K RY+ + P + T + Sbjct: 5 LVGGAVRDRLLGIPVQEQDWVVVGATPEELL----KRRYRQVGRDFPVFLHPET-----K 55 Query: 86 KKYFDITTLRSDLITDGRYAKVV-FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++Y T R G Y + F+ + D RRD TINA+ D+QG +ID G Sbjct: 56 EEYALARTERKS--APGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LK 198 DL + ++ + A ED +R+LR RF F H G + + L+ K+G L Sbjct: 114 RDLEEKLLRHVSPA---FAEDPVRVLRVARFASRFHHLGFRVANETRLLMYSMVKQGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L ER+W E K LE KNP I+ + + + I ++ + Sbjct: 171 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSL 213 >gi|212633983|ref|YP_002310508.1| polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain-containing protein [Shewanella piezotolerans WP3] gi|226702084|sp|B8CJF9|CCA_SHEPW RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|212555467|gb|ACJ27921.1| Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein [Shewanella piezotolerans WP3] Length = 408 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 30/277 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ L ++D D + P++++ K K P + T +++Y Sbjct: 5 LVGGAVRDSLLELPIKDRDYMVVGATPEQMLAQGYKQVGKDFPVFLHPKT-----QQEYA 59 Query: 90 DITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R G ++ + D LRRD TINA+ D QG D G+ DL R Sbjct: 60 LARTERKTAAGYGGFSVDAAPNVTLEQDLLRRDLTINAIAQDDQGNRYDPFNGIADLNAR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSD--GLVASIKAKKGLKILSSER 204 ++ + DA +ED LR+LR RF A + NI ++ L+ I L+ L++ER Sbjct: 120 LLRHVSDA---FIEDPLRVLRVARFAARFHSLGFNIAAETMALMTKISQSGELEALTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ-----------VIEA 252 ++ E++K L + P + G +F ++ + + Q Q ++ Sbjct: 177 VYIELDKSLTSDAPQVFFSVLKECGALAVLFPEIDALFGIPQPEQWHPEIDSGVHTLMVL 236 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289 EQ + D+ +RF L+ K +++ K SLP+ Sbjct: 237 EQAAKLSNDNAVRFASLVHDLGK----ALSPKASLPK 269 >gi|152985385|ref|YP_001346122.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa PA7] gi|166233869|sp|A6UZ87|CCA_PSEA7 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|150960543|gb|ABR82568.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa PA7] Length = 410 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M Y+ + + + + Sbjct: 6 VGGAVRDRLLGRPVTDIDWVVVGASSEEMLARG---YRPVGADFPV----FLHPQSGEEY 58 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 R++ + Y F + D RRD TINA+ D+QG+VID GG DL Sbjct: 59 ALARTERKSGRGYGGFTFHASPDVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQADLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ E Sbjct: 119 RLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAGSGELQALTPE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L NP + +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEPNPEVFVQVLHDCGALAELMPEVEAL 213 >gi|68249804|ref|YP_248916.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 86-028NP] gi|145633006|ref|ZP_01788738.1| hypothetical protein CGSHi3655_05574 [Haemophilus influenzae 3655] gi|145635112|ref|ZP_01790818.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittAA] gi|148826131|ref|YP_001290884.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae PittEE] gi|229844786|ref|ZP_04464924.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 6P18H1] gi|166233856|sp|A5UCK0|CCA_HAEIE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|68058003|gb|AAX88256.1| tRNA nucleotidyltransferase [Haemophilus influenzae 86-028NP] gi|144986232|gb|EDJ92811.1| hypothetical protein CGSHi3655_05574 [Haemophilus influenzae 3655] gi|145267720|gb|EDK07718.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittAA] gi|148716291|gb|ABQ98501.1| hypothetical protein CGSHiEE_05680 [Haemophilus influenzae PittEE] gi|229812167|gb|EEP47858.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 6P18H1] Length = 416 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 14/214 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D I ++ + + K P ++ T +++Y Sbjct: 5 LVGGAVRDQLLGLPVKDRDWIVVGADHATLLSLGYQQVGKDFPVFLNPKT-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G T + D +RRD TINA+ + G++ID GG DL NR Sbjct: 60 LARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A Y ++ L+ + L+ L++ER Sbjct: 120 ILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQHLTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E K L KNP ++ G +F ++ Sbjct: 177 VWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|313111771|ref|ZP_07797564.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 39016] gi|310884066|gb|EFQ42660.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 39016] Length = 410 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 20/219 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V DID + D ++ Y+ + + + + Sbjct: 6 VGGAVRDRLLGRPVTDIDWVVVGASSDEML----ARGYRPVGADFPV----FLHPQSGEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D RRD TINA+ D+QG+VID GG DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPDVTLQEDLTRRDLTINAMAEDEQGRVIDPYGGQADLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 118 ARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER W EI++ L NP I +++ G E+ +V+ + Sbjct: 175 ERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEAL 213 >gi|302185950|ref|ZP_07262623.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. syringae 642] Length = 409 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 97/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M I Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLIKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ GL+ + LK L++E Sbjct: 119 RILRHVSPA---FAEDPLRVLRVARFAARYAGYGFTIAPETLGLMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALNELMPEVEAL 213 >gi|283836415|ref|ZP_06356156.1| multifunctional CCA protein [Citrobacter youngae ATCC 29220] gi|291067789|gb|EFE05898.1| multifunctional CCA protein [Citrobacter youngae ATCC 29220] Length = 413 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T R++Y Sbjct: 5 LVGGAVRDALIGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPRT-----REEYA 59 Query: 90 DITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R S YA T + D RRD TINA+ D G++ID G +DL+ Sbjct: 60 LARTERKSGSGYTGFTCYAAPDVT--LEDDLQRRDLTINAMARDDDGEIIDPYHGRSDLQ 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSS 202 NR ++ + A ED LR+LR RF +AH G + D L+ + A L+ L+S Sbjct: 118 NRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIADETMTLMRDMTAAGELEHLTS 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E L +NP + + G + +F +V + Sbjct: 175 ERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEVDAL 213 >gi|296313655|ref|ZP_06863596.1| multifunctional CCA protein [Neisseria polysaccharea ATCC 43768] gi|296839795|gb|EFH23733.1| multifunctional CCA protein [Neisseria polysaccharea ATCC 43768] Length = 417 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 Y + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 55 YEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQQ 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL+ ++ + A +ED +RILR RF A YG E + ++ L+ + L + Sbjct: 115 DLKAGILRHVSPA---FVEDPVRILRTARFAARYGFEIDEETMKLMRKMVENGEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L NP I + G K + +V Sbjct: 172 ERVWQELAKGLMENNPRRMIEVLRECGALKVLLPEV 207 >gi|319778440|ref|YP_004129353.1| Poly(A) polymerase [Taylorella equigenitalis MCE9] gi|317108464|gb|ADU91210.1| Poly(A) polymerase [Taylorella equigenitalis MCE9] Length = 451 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 17/176 (9%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + I + +L +S IVGGAVRD ++ + +D D+AT P + +F + R+ Sbjct: 37 NAIKVCEVLRDHGYQSFIVGGAVRDLMLGKAPKDFDVATNATPLEIKPLFRRALIIGRRF 96 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTIN 125 K++ + +G +II + + D DGR ++F ++ + D RRDFTIN Sbjct: 97 KLV--HVVFGP-EIIETSTFRTSGSQPED--NDGR---ILFDNNYGTIETDVDRRDFTIN 148 Query: 126 ALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 ALY D + + D+ G+ D++N I+ IGD R ED +R+LR RF G K Sbjct: 149 ALYYDPISETVYDFHNGIKDIKNLQIRMIGDPEKRYREDPVRMLRAIRFAGKLGAK 204 >gi|218889325|ref|YP_002438189.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa LESB58] gi|226702075|sp|B7V4H0|CCA_PSEA8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|218769548|emb|CAW25308.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa LESB58] Length = 410 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 20/219 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V DID + D ++ Y+ + + + + Sbjct: 6 VGGAVRDRLLGRPVTDIDWVVVGASSDEML----ARGYRPVGADFPV----FLHPQSGEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D RRD TINA+ D+QG+VID GG DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQADLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 118 ARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER W EI++ L NP I +++ G E+ +V+ + Sbjct: 175 ERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEAL 213 >gi|116672699|ref|YP_833632.1| metal dependent phosphohydrolase [Arthrobacter sp. FB24] gi|116612808|gb|ABK05532.1| metal dependent phosphohydrolase [Arthrobacter sp. FB24] Length = 496 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 7/219 (3%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + D+D T PD+ + + K ++GTI + RK F Sbjct: 36 SLVGGPVRDLFLGRRSPDLDFTTDATPDQTLALIRKWADNFWEIGKAFGTIGM--RKSGF 93 Query: 90 --DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDL 145 +ITT R++ + R V F D LRRDFTINA+ ++ID GG+ DL Sbjct: 94 QIEITTYRAEAYDPESRKPMVAFGSSLTDDLLRRDFTINAMALRLPSMELIDPFGGVRDL 153 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + G +D LR++R RF A G + D A + + + I+S+ER+ Sbjct: 154 HASVLATPGAPETSFSDDPLRMMRAARFAAQLG-VAVRGDVKHAMSQMAERISIISAERV 212 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KL+ +P I + + G+ + + +V + L+ Sbjct: 213 REELVKLICGAHPRVGIDLLVDTGLAEFVLPEVSALRLE 251 >gi|260582019|ref|ZP_05849814.1| polyA polymerase [Haemophilus influenzae NT127] gi|260094909|gb|EEW78802.1| polyA polymerase [Haemophilus influenzae NT127] Length = 480 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 63 NALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 119 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 120 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 173 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 174 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKASKLRLIGDPVTRYQEDPVRMLRSIRFMA 233 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ ++ + LK + R++ E KLL+A + + G+F+ Sbjct: 234 KLDMFLEK--PSEQPISELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 289 Query: 233 EIF 235 ++F Sbjct: 290 QLF 292 >gi|237809043|ref|YP_002893483.1| poly(A) polymerase [Tolumonas auensis DSM 9187] gi|237501304|gb|ACQ93897.1| poly(A) polymerase [Tolumonas auensis DSM 9187] Length = 521 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+K + +VGG VRD L+ +D D+ T P+++ ++F+ R Sbjct: 86 ENALKVLYRLHKAGYQGYLVGGGVRDLLLGKIPKDFDVVTDAHPEQIRKLFNNCRLIGRR 145 Query: 68 ---------YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 +I + G + K + L+ D Y + + D+ Sbjct: 146 FRLAHIVFGRDIIEVATFRGHHHQVNTSKNIAEQSEEGMLLRDNVYGTI------EEDAE 199 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NALY + + + D+ GGLNDL ++ IGD R ED +R+LR RF A Sbjct: 200 RRDFTVNALYYNIKDFSLHDFHGGLNDLAAGKLELIGDPETRYREDPVRMLRAVRFAAKL 259 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G D S A L+ + S R++ E KL A + L+ + G+F+++F Sbjct: 260 GLTISDRSAEPISRLAPL-LQDIPSARLFEETIKLFLAGHALSTYQLLRKFGLFQQLF 316 >gi|290476646|ref|YP_003469551.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004] gi|289175984|emb|CBJ82787.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004] Length = 503 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 19/216 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L++ +D DIAT P++V ++F R Sbjct: 84 NALKVLYRLNKSGFQAYLVGGGVRDLLLHKKPKDFDIATNATPEQVRKLFRNCRL----V 139 Query: 74 SISYGTIKIICRKKYFDITTLR--------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + I+ ++ T R +D + + RD + D++RR Sbjct: 140 GRRFRLAHIMFGPDVIEVATFRGSHEQVESNDRNQSQKAQSGMLLRDNIFGSVEEDAVRR 199 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY + + DYVGG+ DL+ I+ IGD R ED +R+LR R FA + Sbjct: 200 DFTINSLYYGIEDFALRDYVGGMADLQAGIIRLIGDPETRYREDPVRMLRAVR-FASKLD 258 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 I+ + LK + S R++ E KLL++ Sbjct: 259 MTIEKTTAEPIPQLAFLLKDIPSARLFEESLKLLQS 294 >gi|15595781|ref|NP_249275.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa PAO1] gi|73619822|sp|Q9I5V3|CCA_PSEAE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|9946455|gb|AAG03973.1|AE004494_9 tRNA nucleotidyl transferase [Pseudomonas aeruginosa PAO1] Length = 410 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 20/219 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V DID + D ++ Y+ + + + + Sbjct: 6 VGGAVRDRLLGRPVTDIDWVVVGASSDEML----ARGYRPVGADFPV----FLHPQSGEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D RRD TINA+ D+QG+VID GG DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQADLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 118 ARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER W EI++ L NP I +++ G E+ +V+ + Sbjct: 175 ERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEAL 213 >gi|292489258|ref|YP_003532145.1| methionine gamma-lyase [Erwinia amylovora CFBP1430] gi|291554692|emb|CBA22417.1| methionine gamma-lyase [Erwinia amylovora CFBP1430] gi|312173418|emb|CBX81672.1| methionine gamma-lyase [Erwinia amylovora ATCC BAA-2158] Length = 481 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 39/248 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 53 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL---- 108 Query: 73 TSISYGTIKIICRKKYFDITTLRS----------DLITDGRYAKVVFTRD-----WKADS 117 + ++ + ++ T R D + R + RD + D+ Sbjct: 109 VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSHRDQNGMLLRDNIFGSIEDDA 168 Query: 118 LRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRD TIN+LY V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 169 QRRDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAAK 228 Query: 177 YGEKNIDSDGLVASIKAKKGLKI---------LSSERIWSEINKLLEAKNPLNAIVHMYN 227 L SI A G I + R++ E KLL+A + + + Sbjct: 229 ----------LDMSIAAGTGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLE 278 Query: 228 GGIFKEIF 235 +F+ +F Sbjct: 279 YQLFQPLF 286 >gi|262360751|gb|ACY57472.1| tRNA nucleotidyltransferase [Yersinia pestis D106004] Length = 312 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL V + D + P++++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD T+NA+ G+ ID G DL NR Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF A + ++ L++++ L L+ ER Sbjct: 120 VLRHVSDA---FGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E K L+ ++P + + G +F +++ + Sbjct: 177 VWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERL 213 >gi|291326511|ref|ZP_06573973.1| multifunctional CCA protein [Providencia rettgeri DSM 1131] gi|291313991|gb|EFE54444.1| multifunctional CCA protein [Providencia rettgeri DSM 1131] Length = 417 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 26/203 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L + D D + P+ ++ + K P + K Sbjct: 10 KVYLVGGAVRDQLLGLPISDRDYVVVGTTPEAMLSQGFQQVGKDFPV--------FLHPK 61 Query: 87 KYFDITTLRSDLITDGRY-------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 + + R++ Y A V D D LRRD TINA+ + G+++D Sbjct: 62 THEEYALARTERKIGAGYTGFSCYSAPDVTIED---DLLRRDLTINAIAQSESGEIVDPY 118 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKK 195 G+ DL++R ++ + DA ED LR+LR RF A Y E ++ L+ ++ A Sbjct: 119 QGVKDLKSRVLRHVSDA---FSEDPLRVLRVARFAARYFEHGFTIAPETLTLMQTMAATG 175 Query: 196 GLKILSSERIWSEINKLLEAKNP 218 L L++ER+W+E K L++ +P Sbjct: 176 ELSHLTAERVWTETEKALKSNSP 198 >gi|159040572|ref|YP_001539825.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Salinispora arenicola CNS-205] gi|157919407|gb|ABW00835.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Salinispora arenicola CNS-205] Length = 485 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 79/321 (24%), Positives = 132/321 (41%), Gaps = 28/321 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PD+ ++I V T +GTI + + Sbjct: 48 LVGGSVRDALLGRLGDDLDFCTDAHPDQTLQIVRGWAEAVWETGREFGTIGVQRDGLRLE 107 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 ITT R+++ R V + D RRDFT+NA+ + D GGL DL + Sbjct: 108 ITTFRAEVYDQVSRNPVVQYGTSLTEDLKRRDFTVNAMAVSVPDHRFTDPHGGLADLATK 167 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR+LR RF A + D A + L +++ERI E Sbjct: 168 VVRTPSAPEESFRDDPLRMLRAARFAAQL-RFAVHPDVRAAMTRMATDLDRITAERIRDE 226 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------------QLSQVIEAEQV 255 KLL +P+ + + + G+ + ++ + L+ L+ V A Sbjct: 227 FTKLLCGADPVTGLRLLVDSGLAERFLPELTGLKLEIDEHAQHKDVYEHTLTVVRNAVSY 286 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 E D +LR L+ K + ++ +SF + L+ +K Sbjct: 287 EEDGCDFVLRMAALMHDVGKPATKAVGPDGR---------VSFHHHEVVGARLTKARMKA 337 Query: 316 LFYLYGDKVMIAKLKIFLALH 336 L + + IAK+ +ALH Sbjct: 338 LRF---PREAIAKVTALVALH 355 >gi|307244988|ref|ZP_07527085.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253941|ref|ZP_07535793.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258396|ref|ZP_07540137.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854153|gb|EFM86361.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863145|gb|EFM95087.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867580|gb|EFM99427.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 510 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + + ++I Sbjct: 86 NALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGR-QCRLI-- 142 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRDF 122 + I+ + +++ T R+D + + +KV + RD + D+ RRDF Sbjct: 143 GRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRDF 202 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 ++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A + Sbjct: 203 SVNSLYYDPKHNLIFDFFDGITDLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKL-DMF 261 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KL ++ M G+F+++F Sbjct: 262 LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLF 315 >gi|292898512|ref|YP_003537881.1| poly(A) polymerase [Erwinia amylovora ATCC 49946] gi|291198360|emb|CBJ45466.1| poly(A) polymerase [Erwinia amylovora ATCC 49946] Length = 457 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 110/250 (44%), Gaps = 43/250 (17%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 29 ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL---- 84 Query: 73 TSISYGTIKIICRKKYFDITTLRS----------DLITDGRYAKVVFTRD-----WKADS 117 + ++ + ++ T R D + R + RD + D+ Sbjct: 85 VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSHRDQNGMLLRDNIFGSIEDDA 144 Query: 118 LRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRD TIN+LY AD V DYVGGL+DL+ I+ IGD R ED +R+LR RF Sbjct: 145 QRRDLTINSLYYSVAD--FTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFA 202 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKI---------LSSERIWSEINKLLEAKNPLNAIVHM 225 A L SI A G I + R++ E KLL+A + + + Sbjct: 203 AK----------LDMSIAAGTGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKL 252 Query: 226 YNGGIFKEIF 235 +F+ +F Sbjct: 253 LEYQLFQPLF 262 >gi|165975632|ref|YP_001651225.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875733|gb|ABY68781.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 510 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + + ++I Sbjct: 86 NALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGR-QCRLI-- 142 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRDF 122 + I+ + +++ T R+D + + +KV + RD + D+ RRDF Sbjct: 143 GRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRDF 202 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 ++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A + Sbjct: 203 SVNSLYYDPKHNLIFDFFDGITDLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKL-DMF 261 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KL ++ M G+F+++F Sbjct: 262 LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLF 315 >gi|260580633|ref|ZP_05848460.1| polyA polymerase [Haemophilus influenzae RdAW] gi|260092695|gb|EEW76631.1| polyA polymerase [Haemophilus influenzae RdAW] Length = 480 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 63 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 119 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 120 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 173 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 174 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 233 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 234 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 289 Query: 233 EIF 235 ++F Sbjct: 290 QLF 292 >gi|251792689|ref|YP_003007415.1| poly(A) polymerase [Aggregatibacter aphrophilus NJ8700] gi|247534082|gb|ACS97328.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Aggregatibacter aphrophilus NJ8700] Length = 421 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 117/236 (49%), Gaps = 16/236 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + + ++ L + ++ +VGG +RD L+ +D D+AT P+++ IF + V Sbjct: 3 NRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQRQCRLV- 61 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--DGRYAKV----VFTRD-----WKADSLRR 120 + I+ ++ ++ T R++ + ++AK + RD + D+ RR Sbjct: 62 --GRRFRLAHIMFGREIIEVATFRANHAESHNEKHAKQSEEGMLLRDNVYGTLEQDAERR 119 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++NALY + Q + D+ G+ DL+N ++ IGD R ED +R+LR RF A + Sbjct: 120 DFSVNALYYNPQDNTLKDFFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL-D 178 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + + LK + R++ E KLL+A + + G+F+++F Sbjct: 179 MFLDKPSEMPIKELAHLLKNIPPARLFEESLKLLQAGYGVKTYWLLRQYGLFEQLF 234 >gi|238782843|ref|ZP_04626872.1| Phosphatase [Yersinia bercovieri ATCC 43970] gi|238716266|gb|EEQ08249.1| Phosphatase [Yersinia bercovieri ATCC 43970] Length = 412 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V + D + P++++ + K P + + ++Y Sbjct: 5 LVGGAVRDNLLGLPVTERDWVVVGAAPEQLLAQGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ G++ID G DL NR Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARRDNGELIDPYHGRQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + +A ED LR+LR RF FAH G ++ L+A++ L L+ ER Sbjct: 120 LLRHVSEA---FGEDPLRVLRVARFAARFAHLGFTVAPETQSLMAAMAQSGELSALTPER 176 Query: 205 IWSEINKLLEAKNP 218 +W E K L+ +NP Sbjct: 177 VWKETEKALKTQNP 190 >gi|260599317|ref|YP_003211888.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Cronobacter turicensis z3032] gi|260218494|emb|CBA33665.1| Multifunctional CCA protein [Cronobacter turicensis z3032] Length = 415 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 131/299 (43%), Gaps = 31/299 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + K P + T + Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPAQMLELGYQQVGKDFPVFLHPQTHEEYALA 61 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + T +S G + D RRD TINA+ D G+ ID G +DL+ Sbjct: 62 R----TERKSGQGYTGFTCYAAPDVTLEQDLQRRDLTINAIAQDDCGEFIDPYHGRDDLK 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A + ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 118 ARLLRHVSPAFN---EDPLRVLRVARFAARYAHLGFRIAPETLALMREMAENGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E L +NP + + G K +F +V D+L V A + +ID+ Sbjct: 175 ERVWKETESALTTRNPQIYFLMLRECGALKVLFPEV-----DKLFGV-PAPAKWHPEIDT 228 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + ++ LSMA S ++R+ + C+ K L+ P + + +G Sbjct: 229 GIHTLM---------TLSMAAMLSPAVDVRFAAL----CHDLGKGLTPPHLWPRHHGHG 274 >gi|307719927|ref|YP_003891067.1| Polynucleotide adenylyltransferase region [Sulfurimonas autotrophica DSM 16294] gi|306978020|gb|ADN08055.1| Polynucleotide adenylyltransferase region [Sulfurimonas autotrophica DSM 16294] Length = 412 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 112/429 (26%), Positives = 191/429 (44%), Gaps = 46/429 (10%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP--DRVMRIFSKTRY 68 + L I + L K K IVGG +RD ++N+ DIDI + D V I + Sbjct: 4 YPESLDTIFNKLYKHNIKPVIVGGYIRDVILNIPSNDIDIELYGIASLDEVEHILQEFG- 62 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA---KVVFTRDWKADSLRRDFTI 124 V S+G K++ D + R D I G V D+K + RRDFTI Sbjct: 63 DVNSVGKSFGVCKLLYNNLDLDFSLPRQDNKIASGHQGFKITVDTNLDFKTAASRRDFTI 122 Query: 125 NAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ Y + K++D G DL + +K + + + ED LR+LR F + + K Sbjct: 123 NAIGYDVKNKKILDPYHGREDLDKKILKAVDNEKFK--EDPLRVLRAVVFASRFDMKLDK 180 Query: 184 S-DGLVASIKAKKGLKILSSERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 S + + K L L ERI+ EI K LL++ NP + + G F F + + Sbjct: 181 SLEFTCKHMIQNKLLNELPKERIFQEIKKLLLKSNNPSCGFYLLKDLGAF-SFFQEFNTL 239 Query: 242 SLDQLSQVIEA-EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 + ++++ A +++ ++I S F++L ++ + KFS +I+ +F N Sbjct: 240 DEKEYAEILNALKKLKTFQITSDKEFVIL-------ALAVITSKFS---DIQ--TQTFLN 287 Query: 301 CNFNQKTLSIPEIKKLFYL------------YGDKVMIAKLKIFLALHYNNLTH---QDT 345 N+K + I+K+F L Y + K+ I HY ++T + Sbjct: 288 RITNEKII----IEKVFTLHQINFNLESLNDYDIYTLARKINIKFYSHYLHVTQNKKEKI 343 Query: 346 CFILQVLSDIIHWKKPLFPL-TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++L+ + +P+ PL G D++K G+ P K+ IL + Q I ++F+ L Sbjct: 344 EYLLKKAKKMSVLHQPIPPLIKGKDLIKLGLQPSKEFSKILEYTYQAQIRNAFKDKPSAL 403 Query: 405 HHLLRKLIA 413 L + L++ Sbjct: 404 SWLKKNLLS 412 >gi|294786232|ref|ZP_06751486.1| tRNA adenylyltransferase [Parascardovia denticolens F0305] gi|294485065|gb|EFG32699.1| tRNA adenylyltransferase [Parascardovia denticolens F0305] Length = 485 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 11/248 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR---- 85 +VGG VRD L+ D+D T+ P+ + K +GT+ + + Sbjct: 36 ALVGGPVRDLLLGRDPHDLDFCTSAKPEEFEPLLRKWGDGFWDMGRKFGTLGTLKKLADG 95 Query: 86 -KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGL 142 + ++TT RS++ D R +V + + D RRDFT+N++ + + +D GGL Sbjct: 96 TEVSIEVTTYRSEVYDPDSRKPEVDYGDSLEGDLSRRDFTVNSMAIRLPEMEFVDVFGGL 155 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL R ++ + +D LR++R RF A + ++D+ +A + + ++I+S Sbjct: 156 EDLDRRILRTPVEPEQSFSDDPLRMMRAVRFVAQLDFRISLDTSAAIARMADR--IEIVS 213 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ KLL + +P + ++ G+ + ++ + ++ Q + VFE + Sbjct: 214 AERVRDELVKLLLSAHPRKGLENLVASGLADYVLPELPALQMEMDPQ-HHHKDVFEHTMK 272 Query: 262 SLLRFIVL 269 L R I L Sbjct: 273 VLERAIAL 280 >gi|329123092|ref|ZP_08251662.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116] gi|327471647|gb|EGF17089.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116] Length = 480 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 63 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 119 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 120 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 173 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 174 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 233 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 234 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGRGVKTYRLLRQYGLFE 289 Query: 233 EIF 235 ++F Sbjct: 290 QLF 292 >gi|58581989|ref|YP_201005.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623904|ref|YP_451276.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576403|ref|YP_001913332.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426583|gb|AAW75620.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367844|dbj|BAE69002.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520855|gb|ACD58800.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Xanthomonas oryzae pv. oryzae PXO99A] Length = 455 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 18/233 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R Sbjct: 41 NALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRNCRL----I 96 Query: 74 SISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++ ++ ++ T R++ + +GR + + D++RRDFT N Sbjct: 97 GRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEEDAIRRDFTCN 156 Query: 126 ALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID- 183 ALY A + V DY GG D++ R +K IGD R ED +R+LR R + N + Sbjct: 157 ALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLASKL---NFEI 213 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I G L + R++ EI KL + + + + + G+F +F Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLFGALF 266 >gi|229846289|ref|ZP_04466401.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 7P49H1] gi|229811293|gb|EEP47010.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 7P49H1] Length = 416 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 14/214 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D I ++ + + K P ++ T +++Y Sbjct: 5 LVGGAVRDQLLGLPVKDRDWIVVGADHATLLSLGYQQVGKDFPVFLNPKT-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G T + D +RRD TINA+ + G++ID GG DL NR Sbjct: 60 LARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A Y ++ L+ + L+ L++ER Sbjct: 120 ILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQHLTAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E K L KNP ++ G +F ++ Sbjct: 177 VWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 210 >gi|291612637|ref|YP_003522794.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sideroxydans lithotrophicus ES-1] gi|291582749|gb|ADE10407.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sideroxydans lithotrophicus ES-1] Length = 409 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 15/225 (6%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +N + K+ VGGAVRD L+ L VQD D + P++++ + P + T Sbjct: 1 MNVNDLKTYCVGGAVRDRLLGLPVQDHDWVVVGSTPEQMVARGFRPVGADFPVFLHPDT- 59 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVID 137 ++Y T R + G V+T + D LRRDFTINA+ D G +ID Sbjct: 60 ----HEEYALARTERK--VAQGYKGFTVYTSPDVTLEQDLLRRDFTINAIAEDADGNLID 113 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKG 196 GG DL+ ++ + DA ED +RILR RF A +G ++ L+ + Sbjct: 114 PYGGQTDLKAGILRHVSDA---FAEDPVRILRGARFAARFGFTFAPETLALMRKMVDNGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + L +ER+W E+ + L K P + G K+I ++ + Sbjct: 171 VDALVAERVWQELARGLMEKQPSRFFTTLRECGALKKILPEMDAL 215 >gi|294626060|ref|ZP_06704669.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664385|ref|ZP_06729745.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599662|gb|EFF43790.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605849|gb|EFF49140.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 455 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 18/233 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L + + +VGGAVRD L+ +D D+AT P+ V +F R Sbjct: 41 NALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRNCRL----I 96 Query: 74 SISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++ ++ ++ T R+++ + +GR + + D++RRDFT N Sbjct: 97 GRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFTCN 156 Query: 126 ALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID- 183 ALY A + V DY GG D++ R +K IGD R ED +R+LR R A N D Sbjct: 157 ALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLAAKL---NFDI 213 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I G L + R++ EI KL + + + + + G+ +F Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLSALF 266 >gi|107099570|ref|ZP_01363488.1| hypothetical protein PaerPA_01000583 [Pseudomonas aeruginosa PACS2] gi|254243678|ref|ZP_04937000.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 2192] gi|296387090|ref|ZP_06876589.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa PAb1] gi|126197056|gb|EAZ61119.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 2192] Length = 410 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 20/219 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V DID + D ++ Y+ + + + + Sbjct: 6 VGGAVRDRLLGRPVTDIDWVVVGASSDEML----ARGYRPVGADFPV----FLHPQSGEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D RRD TINA+ D+QG+VID GG DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQADLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 118 ARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER W EI++ L NP I +++ G E+ +V+ + Sbjct: 175 ERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEAL 213 >gi|116054312|ref|YP_788757.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa UCBPP-PA14] gi|254237200|ref|ZP_04930523.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa C3719] gi|122261545|sp|Q02TH9|CCA_PSEAB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|115589533|gb|ABJ15548.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169131|gb|EAZ54642.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa C3719] Length = 410 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 20/219 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V DID + D ++ Y+ + + + + Sbjct: 6 VGGAVRDRLLGRPVTDIDWVVVGASSDEML----ARGYRPVGADFPV----FLHPQSGEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D RRD TINA+ D+QG+VID GG DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQADLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN----IDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 118 ARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRIAAETLALMRQLAESGELQALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER W EI++ L NP I +++ G E+ +V+ + Sbjct: 175 ERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEAL 213 >gi|331654655|ref|ZP_08355655.1| multifunctional CCA protein [Escherichia coli M718] gi|331048037|gb|EGI20114.1| multifunctional CCA protein [Escherichia coli M718] Length = 412 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 89/354 (25%), Positives = 151/354 (42%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYHQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF +AH G + D L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|313496760|gb|ADR58126.1| Cca [Pseudomonas putida BIRD-1] Length = 368 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 119/291 (40%), Gaps = 27/291 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ DID ++ V + +K Y+ + + K + Sbjct: 6 VGGAVRDRLLGRPFSDIDW--LVVGATVEEMLAKG-YRPVGADFPV----FLHPKTGEEY 58 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 R++ + Y F + D +RRD TINA+ D+ G V D G NDL Sbjct: 59 ALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKNDLDQ 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ I A L+ L++E Sbjct: 119 RLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEISLDQLSQVIEAEQVFEWKID 261 R W EI + L P + G +E+ LD +L L Q EQ + Sbjct: 176 RSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDGSRTLAALEQAAAHEQPLHVRWA 235 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIP 311 LLR + SI ++ ++ PRE + + C + L +P Sbjct: 236 CLLRGL------PPTSIKAVNQRLKAPRECQELAMLAGECLAQGNQALELP 280 >gi|45435001|gb|AAS60561.1| poly(A) polymerase [Yersinia pestis biovar Microtus str. 91001] Length = 473 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 21/236 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 54 LKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL----VGR 109 Query: 76 SYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD + + + RD + D+ RR Sbjct: 110 RFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRR 169 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A + Sbjct: 170 DFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL-D 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 229 MSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 284 >gi|32490987|ref|NP_871241.1| hypothetical protein WGLp238 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|73619902|sp|Q8D2W4|CCA_WIGBR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|25166193|dbj|BAC24384.1| cca [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 403 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 20/222 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPT-----SISYGTIK 81 K +VGGAVRD L+N+ +++ D + P+ ++++ K K P S + Sbjct: 2 KKYLVGGAVRDGLLNMPIKEKDWVVVESTPEEMIKLGYKPVGKSFPVFLHPKSHEEHALA 61 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 RK + + L T +K+ D K RRD TINA+ D+ G +ID GG Sbjct: 62 RTERKNGYGYKGFK--LYTS---SKITLEEDLK----RRDLTINAIAKDKNGNLIDPYGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKI 199 + DL + +K I ++ ED LR+LR RF A+ N IDS L + L Sbjct: 113 IKDLYEKKLKHISNSFK---EDPLRVLRTARFAAYLFHLNFFIDSKTLKIMSEMIDELFF 169 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + ERIW E K L +NP + G K+IF +++ + Sbjct: 170 IPVERIWLETKKALLCRNPHVYFKVLLKCGALKKIFPEIENL 211 >gi|319948990|ref|ZP_08023091.1| polynucleotide adenylyltransferase [Dietzia cinnamea P4] gi|319437345|gb|EFV92364.1| polynucleotide adenylyltransferase [Dietzia cinnamea P4] Length = 542 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 13/226 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR----- 85 +VGG+VRD+++ D+D T P+ V I + V T I +GT+ + R Sbjct: 81 LVGGSVRDAVLGRLGTDLDFTTDARPEAVRGILDRYADAVWDTGIEFGTLSAVKRDGDGI 140 Query: 86 KKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYV 139 ++ +ITT R+D DG R +VV+ D +RRDFT+NA L+ D + + +D + Sbjct: 141 EQQIEITTFRADSY-DGVTRNPEVVYGDTLSGDLVRRDFTVNAMAVRLHPDGRHEFVDPL 199 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 G++ L I +D LR+LR RF + G + A + + Sbjct: 200 NGMDALLAGVIDTPAAPEQSFADDPLRMLRACRFVSQLG-FTLAPRVFRAMTEMTAEIDR 258 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 +++ER+ +E++K + P++ I + G+ + +V + L++ Sbjct: 259 ITAERVRAELDKTILGDYPIDGINMLCETGLADHVLPEVPGMKLER 304 >gi|123441078|ref|YP_001005067.1| poly(A) polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088039|emb|CAL10827.1| poly(A) polymerase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 440 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 13/234 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R+ Sbjct: 19 NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRF 78 Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 ++ I++ R + T SD + + + RD + D+ RRDF Sbjct: 79 RLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQRRDF 138 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A + Sbjct: 139 TINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL-DMT 197 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E KLL++ + + +F+ +F Sbjct: 198 ISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 251 >gi|322515233|ref|ZP_08068231.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976] gi|322118738|gb|EFX90944.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976] Length = 510 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 16/230 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF ++ + Sbjct: 90 IVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFG---HQCRLIGRRF 146 Query: 78 GTIKIICRKKYFDITTLRSDLI--TDGRYAKV----VFTRD-----WKADSLRRDFTINA 126 I+ + +++ T R+D + + +KV + RD + D+ RRDFT+N+ Sbjct: 147 RLAHIVFGRDIYEVATFRADHSNHSSDKISKVSEEGMLLRDNVYGTLREDAQRRDFTVNS 206 Query: 127 LYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A + +D Sbjct: 207 LYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVIRYQEDPVRMLRAVRFMAKL-DMFLDKP 265 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + LK + + R++ E KLL++ M G+F+++F Sbjct: 266 SDAPIRELAHLLKNIPAARLFDESLKLLQSGQGFKTYQLMRQYGLFEQLF 315 >gi|21242528|ref|NP_642110.1| polynucleotide adenyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|21107981|gb|AAM36646.1| polynucleotide adenyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 455 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 18/233 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L + + +VGGAVRD L+ +D D+AT P+ V +F R Sbjct: 41 NALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRNCRL----I 96 Query: 74 SISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++ ++ ++ T R+++ + +GR + + D++RRDFT N Sbjct: 97 GRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFTCN 156 Query: 126 ALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID- 183 ALY A + V DY GG D++ R +K IGD R ED +R+LR R A N D Sbjct: 157 ALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLAAKL---NFDI 213 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I G L + R++ EI KL + + + + + G+ +F Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALF 266 >gi|52424981|ref|YP_088118.1| PcnB protein [Mannheimia succiniciproducens MBEL55E] gi|52307033|gb|AAU37533.1| PcnB protein [Mannheimia succiniciproducens MBEL55E] Length = 425 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 22/237 (9%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------R 67 + ++++ LN+ ++ +VGG +RD L++ +D D+AT PD++ IF + R Sbjct: 5 NALSVVEKLNRNGYEAYVVGGCLRDLLLDKKPKDFDVATNARPDQIQAIFQRQCRLVGRR 64 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSD-------LITDGRYAKVVFTRDWKADSLR 119 +++ I++ R + DI + L+ D Y + + D+ R Sbjct: 65 FRLAHIMFGRDIIEVATFRANHSDIENENASKQSEEGMLLRDNVYGTL------EQDAER 118 Query: 120 RDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NAL Y+ + V DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 119 RDFTVNALYYSPKDNLVYDYFNGIEDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL- 177 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +D K LK + R++ E KLL++ + + +F+++F Sbjct: 178 DMFLDKSSAPHIRKLAHLLKNIPPARLFDESLKLLQSGQGVKTYNLLREYHLFEQLF 234 >gi|26987136|ref|NP_742561.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas putida KT2440] gi|73619823|sp|Q88QU2|CCA_PSEPK RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|24981767|gb|AAN66025.1|AE016231_8 tRNA nucleotidyltransferase, putative [Pseudomonas putida KT2440] Length = 368 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 117/294 (39%), Gaps = 33/294 (11%) Query: 32 VGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 VGGAVRD L+ V DID + T+ Y+ + + K Sbjct: 6 VGGAVRDRLLGRPVSDIDWLVVGATV------EEMLANGYRPVGADFPV----FLHPKTG 55 Query: 89 FDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + Y F + D +RRD TINA+ D+ G V D G ND Sbjct: 56 EEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKND 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L R ++ + A ED LR+LR RF A Y ++ L+ I A L+ L Sbjct: 116 LDQRLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQAL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEISLDQLSQVIEAEQVFEW 258 ++ER W EI + L P + G +E+ LD +L L Q EQ Sbjct: 173 TAERSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDGSRTLAALEQAAAHEQPLNV 232 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIP 311 + LLR + SI ++ ++ PRE + + C + L +P Sbjct: 233 RWACLLRGL------PPTSIKAVNQRLKAPRECQELAMLTGECLAQGNQALELP 280 >gi|289617254|emb|CBI56021.1| unnamed protein product [Sordaria macrospora] Length = 602 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 33/236 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRI----------FSKTRYKVIPTSISYGTIK 81 GG VRD L+ DID+A + + + R+ + P + G + Sbjct: 116 AGGWVRDKLLGTESHDIDVAINNMTGEAFALRLRDYCDADPAHRERHSIGPQDV--GNLH 173 Query: 82 IICRK----KYFDITT------------LRSDLIT-DGRYAKVVFTRDWKADSLRRDFTI 124 I R K+ + TT LR + T D R +V F + D+LRRD T+ Sbjct: 174 KIARNPDKSKHLETTTIKLFGLDVDFVNLRKETYTEDSRNPQVEFGT-AEEDALRRDATV 232 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNI 182 NAL+ + GKV D+ GG+ D+ + I+ + ++D LR+LR RF + G + Sbjct: 233 NALFYNLHTGKVEDFTGGMKDMDRKLIRTPLEPLQTFMDDPLRVLRLIRFASRLGFTIDE 292 Query: 183 DSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++ ++ + + LK+ +S ERI E+ K+L+ +PL+++ ++ + ++ +F D Sbjct: 293 EAKAVMGDERVLEALKLKISRERIGVELEKMLKGPDPLSSLTYINDLNLYHTLFTD 348 >gi|134096102|ref|YP_001101177.1| tRNA nucleotidyl transferase [Herminiimonas arsenicoxydans] gi|166233859|sp|A4G969|CCA_HERAR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|133740005|emb|CAL63056.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2', 3'-cyclic phosphodiesterase; Phosphatase] [Herminiimonas arsenicoxydans] Length = 414 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 24/255 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD L+ ++V+D D + P++++ K P + T + Sbjct: 5 IVGGAVRDELLGVAVKDRDYVVVGATPEQMIAQNYTPVGKDFPVFLHPVT--------HE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y VF D + D +RRD T+NA+ D G++ID GG DL Sbjct: 57 EYALARTERKTAPGYKGFVFHTDAGVTLEEDLIRRDLTVNAMAKDADGRIIDPFGGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILSSE 203 + + + A ED +RILR RF A + + ++ +++ L+ ++ A + L E Sbjct: 117 EQKIFRHVSSA---FAEDPVRILRVARFAARFPQFSVAAETNALMQAMVAAGEVDALVPE 173 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R W E+ + L P + + G + + + LD L V + E+ + +ID+ Sbjct: 174 RTWQELARGLMEVQPSRMFAVLRDCGALQRMLPE-----LDALWGVPQPEK-YHPEIDTG 227 Query: 264 LRFIVLISWQDKKSI 278 + ++++ ++++ Sbjct: 228 VHVMMVVDHAAQQNL 242 >gi|123446371|ref|XP_001311937.1| polyA polymerase family protein [Trichomonas vaginalis G3] gi|121893765|gb|EAX99007.1| polyA polymerase family protein [Trichomonas vaginalis G3] Length = 457 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 31/289 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI-------- 82 I GG VRD ++ DIDIA + FS+T KV+ + ++ Sbjct: 42 IAGGWVRDKILGKENDDIDIAIS---GATCTEFSQTMVKVLGPNTKVVILEANHEQSKHL 98 Query: 83 ----IC--RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 +C R + DI LRS+ ++G ++ ++D+ RDF++NAL+ + Q K+ Sbjct: 99 NTARVCLFRDFWLDICGLRSESYSEGETSEGT----AQSDARHRDFSMNALFFNLQTMKI 154 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK-AK 194 DYV G+ ++++ I+ A +D RI+R FRF A Y + ID + L A K Sbjct: 155 EDYVKGVQSIKDKVIRTPISAIEDFTDDPNRIVRCFRFVAKY-DFQIDQEILDAIPKIIP 213 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L ++ +RI +E+ K+L AK+ A+ H+ + G+ IF SLD + + Sbjct: 214 LFLHNITKDRIATELTKMLHAKSAFFAMQHLISSGMLSPIFDSESLWSLDMEKTLQRVRR 273 Query: 255 VFEWKI-----DSLLRFI--VLISWQDKKSILSMAKKFSLPREIRYFLI 296 V + + DS++ + VL+ ++KK++ KK I Y ++ Sbjct: 274 VHQIQPDLTGNDSMITYFAAVLLDLEEKKAVPDPEKKNKPMPAITYQIV 322 >gi|50122509|ref|YP_051676.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pectobacterium atrosepticum SCRI1043] gi|73619772|sp|Q6D160|CCA_ERWCT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|49613035|emb|CAG76486.1| tRNA nucleotidyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 414 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 57/358 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ L V + D + P+ ++ + K P + I R +Y Sbjct: 5 LVGGAVRDSLLGLPVTEKDWVVVGATPEHLLAQGYQQVGKDFPV-----FLHPISRDEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y V + + D LRRD TINA+ ++G +ID G DL Sbjct: 59 --ALARTERKSGKGYTGFVCHAEPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILS 201 NR ++ + DA ED LR+LR RF FAH G + + + A +G L L+ Sbjct: 117 DNRVLRHVSDA---FSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAFLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L +P + + G +F ++ D L V A + +ID Sbjct: 174 PERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEI-----DNLYGV-PAPAKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ + +MA + S ++R+ + C+ K L+ PE+ +G Sbjct: 228 TGIHTMMTV---------AMAARLSPDIDVRFATL----CHDLGKGLTPPELWPRHLGHG 274 Query: 322 D------KVMIAKLKIF--------LALHYNNLTHQDTCF----ILQVLSDIIHWKKP 361 + + +L++ L Y++L H +L++ I W+KP Sbjct: 275 PAGVKLVEALCQRLRVPNPIRDLAKLVAEYHDLVHTVQVLQPKTLLKLFDAIDVWRKP 332 >gi|315225766|ref|ZP_07867554.1| polyA polymerase family protein [Parascardovia denticolens DSM 10105] gi|315119898|gb|EFT83030.1| polyA polymerase family protein [Parascardovia denticolens DSM 10105] Length = 509 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 11/248 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR---- 85 +VGG VRD L+ D+D T+ P+ + K +GT+ + + Sbjct: 60 ALVGGPVRDLLLGRDPHDLDFCTSAKPEEFEPLLRKWGDGFWDMGRKFGTLGTLKKLADG 119 Query: 86 -KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGL 142 + ++TT RS++ D R +V + + D RRDFT+N++ + + +D GGL Sbjct: 120 TEVSIEVTTYRSEVYDPDSRKPEVDYGDSLEGDLSRRDFTVNSMAIRLPEMEFVDVFGGL 179 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL R ++ + +D LR++R RF A + ++D+ +A + + ++I+S Sbjct: 180 EDLDRRILRTPVEPEQSFSDDPLRMMRAVRFVAQLDFRISLDTSAAIARMADR--IEIVS 237 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+ E+ KLL + +P + ++ G+ + ++ + ++ Q + VFE + Sbjct: 238 AERVRDELVKLLLSAHPRKGLENLVASGLADYVLPELPALQMEMDPQ-HHHKDVFEHTMK 296 Query: 262 SLLRFIVL 269 L R I L Sbjct: 297 VLERAIAL 304 >gi|261345791|ref|ZP_05973435.1| polyA polymerase [Providencia rustigianii DSM 4541] gi|282566280|gb|EFB71815.1| polyA polymerase [Providencia rustigianii DSM 4541] Length = 529 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 14/213 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + +L LNK ++ +VGG VRD L+ L +D DI T P+++ ++F R+ Sbjct: 109 NALKVLYRLNKNGYEAYLVGGGVRDLLLGLKPKDFDITTNATPEQIRKLFRNCRLVGRRF 168 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFT 123 ++ I++ + + D +L + + + RD + D++RRDFT Sbjct: 169 RLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNG--MLLRDNIFGSIEDDAIRRDFT 226 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +N+LY + V DYV GL DL++ I+ IGD R ED +R++R RF + I Sbjct: 227 VNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRAVRFACKLNMR-I 285 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + + + L + S R++ E KLL++ Sbjct: 286 EPNTAEPIPRLAPLLGEIPSARLFEESLKLLQS 318 >gi|205373866|ref|ZP_03226668.1| tRNA CCA-pyrophosphorylase [Bacillus coahuilensis m4-4] Length = 347 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 5/204 (2%) Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT RS+ D R+ K V F R + D +RRDFT+NA+ ++ Sbjct: 9 GIEHGTVLVLYNGEPYEITTYRSEEGYNDYRHPKEVRFIRSLEQDLMRRDFTMNAIAMNR 68 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G++ D G D+ I+ +G+ R+ ED LRI+R RF + G K ++ A Sbjct: 69 EGRLFDPFDGEKDITREMIRTVGNPSERLTEDALRIMRAVRFQSQLGFK-LEQQTERALK 127 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQVI 250 + L +S ER+ E +KLL AI + I++ +F L+ Q+ L++ + Sbjct: 128 EFSHLLPHVSIERLLVEFDKLLAGPFISIAINTLIEQSIYQHLFDLEDQKSELEKFKNYV 187 Query: 251 EAEQVFEWKIDSLLRFIVLISWQD 274 + + LL FI LI+ +D Sbjct: 188 SSSSELTFDERWLL-FIKLINKED 210 >gi|53728854|ref|ZP_00134674.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 492 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + + ++I Sbjct: 86 NALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGR-QCRLI-- 142 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRDF 122 + I+ + +++ T R+D + + +KV + RD + D+ RRDF Sbjct: 143 GRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRDF 202 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 ++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A + Sbjct: 203 SVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKL-DMF 261 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KL ++ M G+F+++F Sbjct: 262 LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLF 315 >gi|303250925|ref|ZP_07337116.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252000|ref|ZP_07338171.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247163|ref|ZP_07529214.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251707|ref|ZP_07533611.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260634|ref|ZP_07542326.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262766|ref|ZP_07544393.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|302649430|gb|EFL79615.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650231|gb|EFL80396.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856301|gb|EFM88453.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860793|gb|EFM92802.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869711|gb|EFN01496.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871911|gb|EFN03628.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 510 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + + ++I Sbjct: 86 NALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGR-QCRLI-- 142 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRDF 122 + I+ + +++ T R+D + + +KV + RD + D+ RRDF Sbjct: 143 GRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRDF 202 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 ++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A + Sbjct: 203 SVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKL-DMF 261 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KL ++ M G+F+++F Sbjct: 262 LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLF 315 >gi|317493240|ref|ZP_07951662.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918633|gb|EFV39970.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 507 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 21/178 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 88 ENALKVLYRLNKSGYEAYLVGGGVRDLLLGKQPKDFDITTSATPEQVRKLFRNCRLVGRR 147 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++I + G + K L+ D Y + + D+ Sbjct: 148 FRLAHVMFGPEIIEVATFRGHHEHAGDGKNISQQAQNGMLLRDNVYGNI------EEDAQ 201 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDFTIN+LY V DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 202 RRDFTINSLYYSISDFTVRDYTGGLRDLQEGRIRLIGDPETRYREDPVRMLRAVRFAA 259 >gi|283787184|ref|YP_003367049.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Citrobacter rodentium ICC168] gi|282950638|emb|CBG90310.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Citrobacter rodentium ICC168] Length = 410 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 127/296 (42%), Gaps = 31/296 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDTLLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G +ID G DL+NR Sbjct: 63 --TERKSGPGYTGFTCYAAPDVTLEEDLQRRDLTINALAQDDDGNIIDPYHGRADLKNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETMALMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F +V D L V A + +ID+ + Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEV-----DALFGV-PAPAKWHPEIDTGVH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 ++ LSMA S +IR+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPEVDIRFATL----CHDLGKGLTPPELWPRHHGHG 274 >gi|126207664|ref|YP_001052889.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae L20] gi|126096456|gb|ABN73284.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 510 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + + ++I Sbjct: 86 NALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGR-QCRLI-- 142 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRDF 122 + I+ + +++ T R+D + + +KV + RD + D+ RRDF Sbjct: 143 GRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRDF 202 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 ++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A + Sbjct: 203 SVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKL-DMF 261 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KL ++ M G+F+++F Sbjct: 262 LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLF 315 >gi|315634141|ref|ZP_07889430.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393] gi|315477391|gb|EFU68134.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393] Length = 485 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 112/242 (46%), Gaps = 28/242 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + + ++ L + ++ +VGG +RD L+ +D D+AT P+++ +F + V Sbjct: 66 NRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQRQCRLV- 124 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWK 114 + ++ ++ ++ T R+ L+ D Y + + Sbjct: 125 --GRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSEEGMLLRDNVYGTL------E 176 Query: 115 ADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDF++NALY + Q + DY G+ DL+N ++ IGD R ED +R+LR RF Sbjct: 177 QDAERRDFSVNALYYNPQDNTLKDYFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIRF 236 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A E +D LK + R++ E KLL++ + + + G+F++ Sbjct: 237 MAKL-EMFLDKPSEAPIKSLAHLLKNIPPARLFEESLKLLQSGHGVKTYQLLRQYGLFEQ 295 Query: 234 IF 235 +F Sbjct: 296 LF 297 >gi|169351517|ref|ZP_02868455.1| hypothetical protein CLOSPI_02297 [Clostridium spiroforme DSM 1552] gi|169291739|gb|EDS73872.1| hypothetical protein CLOSPI_02297 [Clostridium spiroforme DSM 1552] Length = 451 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 100/205 (48%), Gaps = 23/205 (11%) Query: 28 KSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 ++ +VGG VRD LM ++ D+D+ L + K V S+G +K+ Sbjct: 24 RAFLVGGIVRDMLMYGHVDYHDVDVEVYGLSIEQLENILKKYGNVNCIGKSFGILKLDVL 83 Query: 86 KKYFDITTLRSDLITDGRYA--KVVFTRDW--KADSLRRDFTINAL-YADQQGKVIDYVG 140 Y D R+++ R+ KV +D K +LRRD T+NAL Y + GK+ D+ G Sbjct: 84 ANY-DFALPRTEIKIGNRHQDFKVEVNKDLDLKTAALRRDLTVNALMYEVKTGKIYDFYG 142 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRF------FRFFAHYGEKNIDSDGLVASIKAK 194 G+ DL RT++ + ED LR+LR F FF KNI + K Sbjct: 143 GIEDLNKRTLRMVDKKTFE--EDPLRVLRVAQFASRFEFFVEAKTKNICKE------MVK 194 Query: 195 KG-LKILSSERIWSEINKLLEAKNP 218 KG LK LS+ER++ E NKLL + P Sbjct: 195 KGMLKYLSNERVFQEYNKLLLSNRP 219 >gi|54295580|ref|YP_127995.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Legionella pneumophila str. Lens] gi|73619790|sp|Q5WT58|CCA_LEGPL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|53755412|emb|CAH16908.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Lens] gi|307611620|emb|CBX01304.1| transfer RNA nucleotidyltransferase [Legionella pneumophila 130b] Length = 410 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T +++Y Sbjct: 5 LVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGRDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVV-FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G Y + F+ + D RRD TINA+ D+QG +ID G DL Sbjct: 60 LARTERKS--APGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSS 202 + ++ + A ED +R+LR RF F H G + + L+ K+G L L Sbjct: 118 EKLLRHVSSA---FAEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELAHLIP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E K LE KNP I+ + + + I ++ + Sbjct: 175 ERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSL 213 >gi|50122241|ref|YP_051408.1| poly(A) polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49612767|emb|CAG76217.1| poly(A) polymerase [Pectobacterium atrosepticum SCRI1043] Length = 482 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R Sbjct: 59 NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL----V 114 Query: 74 SISYGTIKIICRKKYFDITTLRSDLI----------TDGRYAKVVFTRD-----WKADSL 118 + I+ + ++ T R + + + RD + D+ Sbjct: 115 GRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEAKNSSQQAQSGMLLRDNIFGSVEEDAQ 174 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A Sbjct: 175 RRDFSINSLYYSISDFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAA 232 >gi|161760588|ref|YP_069273.2| poly(A) polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186894092|ref|YP_001871204.1| poly(A) polymerase I [Yersinia pseudotuberculosis PB1/+] gi|186697118|gb|ACC87747.1| poly(A) polymerase [Yersinia pseudotuberculosis PB1/+] Length = 488 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 70 NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL----V 125 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 126 GRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQ 185 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 186 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL 245 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 246 -DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 302 >gi|240128281|ref|ZP_04740942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae SK-93-1035] gi|268686678|ref|ZP_06153540.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-93-1035] gi|268626962|gb|EEZ59362.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-93-1035] Length = 410 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G + + +V Sbjct: 172 ERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEV 207 >gi|260771220|ref|ZP_05880147.1| poly(A) polymerase [Vibrio furnissii CIP 102972] gi|260613817|gb|EEX39009.1| poly(A) polymerase [Vibrio furnissii CIP 102972] gi|315179174|gb|ADT86088.1| polyA polymerase [Vibrio furnissii NCTC 11218] Length = 456 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 30/267 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 38 ENALKVLYRLHGAGFEAYLVGGGVRDLLLGGKPKDFDVATNATPEQIRQLFRNCRL---- 93 Query: 73 TSISYGTIKIICRKKYFDITTLRSD----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R L+ D Y + D Sbjct: 94 IGRRFRLAHIMFGRDIIEVATFRGHHQENNKQIASQSEAGMLLRDNVYGTI------DED 147 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINA+Y + I DY GG+ D+ ++ I+ IGD R ED +R+LR RF Sbjct: 148 AERRDFTINAMYYNIADYSIHDYAGGMEDMDDKLIRLIGDPETRYREDPVRMLRAIRFAV 207 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I+ + L+ + + R++ E K+L++ L M +F+++F Sbjct: 208 KL-DFDIEEETAAPIEHLAPLLRDIPAARLYEESLKMLQSGYGLETYHLMREYNLFQQLF 266 Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDS 262 + D S + EQ+ + +DS Sbjct: 267 PTIARHFTDDYSS--QTEQMLDLALDS 291 >gi|298372295|ref|ZP_06982285.1| polyA polymerase family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275199|gb|EFI16750.1| polyA polymerase family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 471 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 11/196 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI----SYGTIKIICRK 86 ++GG VRD L++ +DIDI ++ D V R TS+ +YGT ++ R Sbjct: 28 LIGGYVRDLLLDRGSKDIDI--VVVGDGVAFAEGLRRQLGKGTSLAVFRTYGTAQLKTRN 85 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 +I R + +V + D RRDFTINAL G++ID GG+ Sbjct: 86 GEIEIVGARRESYRHDSRNPIVEEGTLEDDQNRRDFTINALAICLNKKHFGELIDPFGGI 145 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL NR I+ D +D LR++R RF G I + LVA + ++ +KI++ Sbjct: 146 EDLGNRLIRTPLDPDITFSDDPLRMMRAIRFATQLGFI-IQDETLVAIWRNRERIKIITK 204 Query: 203 ERIWSEINKLLEAKNP 218 ERI EINK+L + P Sbjct: 205 ERIADEINKILLSAKP 220 >gi|194098678|ref|YP_002001740.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae NCCP11945] gi|240125759|ref|ZP_04738645.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae SK-92-679] gi|268684357|ref|ZP_06151219.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-92-679] gi|226702073|sp|B4RLV5|CCA_NEIG2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|193933968|gb|ACF29792.1| putative tRNA nucleotidyltransferase [Neisseria gonorrhoeae NCCP11945] gi|268624641|gb|EEZ57041.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-92-679] Length = 410 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G + + +V Sbjct: 172 ERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEV 207 >gi|190149447|ref|YP_001967972.1| poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914578|gb|ACE60830.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 521 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + + ++I Sbjct: 97 NALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGR-QCRLI-- 153 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRDF 122 + I+ + +++ T R+D + + +KV + RD + D+ RRDF Sbjct: 154 GRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRDF 213 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 ++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A + Sbjct: 214 SVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKL-DMF 272 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KL ++ M G+F+++F Sbjct: 273 LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLF 326 >gi|15639584|ref|NP_219034.1| polynucleotide adenylyltransferase (pcnB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025823|ref|YP_001933595.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum SS14] gi|3322888|gb|AAC65568.1| polynucleotide adenylyltransferase (pcnB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018398|gb|ACD71016.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum SS14] gi|291059969|gb|ADD72704.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum str. Chicago] Length = 370 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 9/159 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D+ I ++ L ++ IVGGAVRD + + +D DI T +P R+ R+F +R Sbjct: 33 DAGAIRVVEALVGAGYETYIVGGAVRDLVAGRTPKDFDIVTGAVPSRIRRLFRNSRI--- 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + + + C + ++++T RS + +G V + D+ RRDF++NALY D Sbjct: 90 -IGRRFRIVHVSCGSQLYEVSTFRSR-VGEG---SVCVPGTLEEDAWRRDFSVNALYYDP 144 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + VID VGG+ DL+ R ++ + +ED +R+LR Sbjct: 145 LRNVVIDCVGGMVDLKRRRVRPLIPLRSIFVEDPVRMLR 183 >gi|332999816|gb|EGK19400.1| poly A polymerase head domain protein [Shigella flexneri K-272] gi|333015684|gb|EGK35023.1| poly A polymerase head domain protein [Shigella flexneri K-227] Length = 412 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLLVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF +AH G + D L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|296141887|ref|YP_003649130.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tsukamurella paurometabola DSM 20162] gi|296030021|gb|ADG80791.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tsukamurella paurometabola DSM 20162] Length = 486 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P++V + + T I +GT+ + + Sbjct: 47 LVGGSVRDALLGRLTSDLDFTTDARPEQVQALLRGWADAMWDTGIEFGTVSAAFHDQQIE 106 Query: 91 ITTLRS---DLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLN 143 ITT R+ D +T R V F + + D +RRDFTINA+ D D + GL+ Sbjct: 107 ITTYRAEAYDRVT--RNPVVKFGENLRDDLVRRDFTINAMAVRIGRDGAEDFQDPLNGLD 164 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 L I +D LR+LR RF + G + + A + +++E Sbjct: 165 ALLAGVIDTPATPEESFSDDPLRMLRAARFVSQLG-FAVAARVQRAMTDMAPEIDRITAE 223 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 R+ +E++KL+ ++P++ IV + + G+ + + ++ + L Sbjct: 224 RVRAELDKLILGEHPVDGIVLLVDTGLAERVIPEIPGMKL 263 >gi|261380940|ref|ZP_05985513.1| multifunctional CCA protein [Neisseria subflava NJ9703] gi|284796196|gb|EFC51543.1| multifunctional CCA protein [Neisseria subflava NJ9703] Length = 420 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 34/270 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K+ +VGGAVRD L+ L V+D D A T+L + + P S Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVVVGADAQTMLAQGYQPVGKDFPVFLHPDS------- 59 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TIN++ D G +ID Sbjct: 60 ------HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINSMAQDSDGTIID 113 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKG 196 GG DL ++ + A ED +RILR RF A YG + D L+ + Sbjct: 114 PFGGQQDLAAGILRHVSPA---FAEDPVRILRIARFAARYGFQIADETMSLMRQMVENGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L +ER+W E+ K L KNP I + G K + +V D L V + + Sbjct: 171 ADALVAERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEV-----DALFGVPQRAD-Y 224 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 +IDS + ++++ + + LS+A++++ Sbjct: 225 HPEIDSGIHTLMVVQRAAEMN-LSLAERYA 253 >gi|91212484|ref|YP_542470.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli UTI89] gi|117625369|ref|YP_855260.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli APEC O1] gi|218560143|ref|YP_002393056.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli S88] gi|237706183|ref|ZP_04536664.1| tRNA nucleotidyl transferase [Escherichia sp. 3_2_53FAA] gi|331659345|ref|ZP_08360287.1| multifunctional CCA protein [Escherichia coli TA206] gi|122422381|sp|Q1R6S5|CCA_ECOUT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233852|sp|A1AFX8|CCA_ECOK1 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702047|sp|B7MAD3|CCA_ECO45 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|91074058|gb|ABE08939.1| tRNA nucleotidyl transferase [Escherichia coli UTI89] gi|115514493|gb|ABJ02568.1| tRNA nucleotidyl transferase [Escherichia coli APEC O1] gi|218366912|emb|CAR04683.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli S88] gi|226899223|gb|EEH85482.1| tRNA nucleotidyl transferase [Escherichia sp. 3_2_53FAA] gi|294491470|gb|ADE90226.1| multifunctional CCA protein [Escherichia coli IHE3034] gi|307625329|gb|ADN69633.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli UM146] gi|315288832|gb|EFU48230.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 110-3] gi|315297758|gb|EFU57035.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 16-3] gi|323951410|gb|EGB47285.1| poly A polymerase head domain-containing protein [Escherichia coli H252] gi|323957783|gb|EGB53497.1| poly A polymerase head domain-containing protein [Escherichia coli H263] gi|331053927|gb|EGI25956.1| multifunctional CCA protein [Escherichia coli TA206] Length = 412 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 150/354 (42%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLCFRIADETLALMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|59801178|ref|YP_207890.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae FA 1090] gi|293399045|ref|ZP_06643210.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Neisseria gonorrhoeae F62] gi|73619808|sp|Q5F8K9|CCA_NEIG1 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|59718073|gb|AAW89478.1| putative tRNA nucleotidyltransferase [Neisseria gonorrhoeae FA 1090] gi|291610459|gb|EFF39569.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Neisseria gonorrhoeae F62] Length = 410 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D V+ ++T + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWV-------VVGADAQTMLAQGFQPVGKDFPVFLHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G + + +V Sbjct: 172 ERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEV 207 >gi|302870711|ref|YP_003839348.1| tRNA adenylyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315506948|ref|YP_004085835.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Micromonospora sp. L5] gi|302573570|gb|ADL49772.1| tRNA adenylyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315413567|gb|ADU11684.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Micromonospora sp. L5] Length = 486 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 5/222 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PD +++ + T +GTI + Sbjct: 49 LVGGSVRDALLGRLGNDLDFCTDAHPDETIKVIRGWAESIWETGREFGTIACQRDGLNLE 108 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 ITT R+++ R V + D RRDFT+NA+ + D GGL DL + Sbjct: 109 ITTFRAEVYDQVSRNPVVQYGTSLTEDLKRRDFTVNAMAVSLPDHRFTDPYGGLADLAAK 168 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ G +D LR+LR RF A + D A + L +++ERI E Sbjct: 169 IIRTPGTPQESFRDDPLRMLRAARFAAQL-RFAVHPDVRAAMTEMAADLDRITAERIRDE 227 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQ 248 KLL +P+ + + + G+ + ++ ++++D+ +Q Sbjct: 228 FTKLLCGADPITGLRLLVDTGLAERFLPELTGLKLTIDEHAQ 269 >gi|238754483|ref|ZP_04615838.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473] gi|238707312|gb|EEP99674.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473] Length = 467 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 13/234 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R+ Sbjct: 46 NALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRF 105 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRD-----WKADSLRRDF 122 ++ I++ + + + S+ + A+ + RD + D+ RRDF Sbjct: 106 RLAHVMFGPEIIEVATFRGHHEQQQPESNDKNSSQQAQNGMLLRDNIFGSIEEDAQRRDF 165 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A + Sbjct: 166 TINSLYYGISDFALRDYTGGLRDLKQGIIRLIGDPEVRYREDPVRMLRAVRFAAKL-DMT 224 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 225 ISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 278 >gi|51597709|ref|YP_071900.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pseudotuberculosis IP 32953] gi|153947017|ref|YP_001399553.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pseudotuberculosis IP 31758] gi|170022892|ref|YP_001719397.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pseudotuberculosis YPIII] gi|186896853|ref|YP_001873965.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pseudotuberculosis PB1/+] gi|73619910|sp|Q665U9|CCA_YERPS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|167006460|sp|A7FE75|CCA_YERP3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702096|sp|B2K2H9|CCA_YERPB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702098|sp|B1JM22|CCA_YERPY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|51590991|emb|CAH22649.1| tRNA nucleotidyltransferase [Yersinia pseudotuberculosis IP 32953] gi|152958512|gb|ABS45973.1| multifunctional CCA protein [Yersinia pseudotuberculosis IP 31758] gi|169749426|gb|ACA66944.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Yersinia pseudotuberculosis YPIII] gi|186699879|gb|ACC90508.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Yersinia pseudotuberculosis PB1/+] Length = 412 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL V + D + P++++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD T+NA+ G+ ID G DL NR Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF A + ++ L++++ L L+ ER Sbjct: 120 VLRHVSDAFG---EDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E K L+ ++P + + G +F +++ + Sbjct: 177 VWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERL 213 >gi|304316792|ref|YP_003851937.1| polynucleotide adenylyltransferase region [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778294|gb|ADL68853.1| Polynucleotide adenylyltransferase region [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 394 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 4/210 (1%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 KS IVGG +RD ++NL DIDI R + +K I + T KI K Sbjct: 19 KSYIVGGYIRDKILNLESNDIDITVEGDGIRYALMLNKILNGKIEIHEKFKTAKIQADKY 78 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 FD+ + R + T V D D RRDFTIN L D ++G +ID GL+D++ Sbjct: 79 TFDVVSARKEYYTHSGILPDVELADIVEDIKRRDFTINMLAFDIKEGMIIDLCNGLDDIK 138 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERI 205 N+ I+ + D +D RI R R+ K ++ L+ A LS++RI Sbjct: 139 NKLIRVVHDKSFN--DDPTRIFRALRYSVRLDFKLEPHTELLLKQSIANGDFDNLSTDRI 196 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +EI +L KNP + M + I ++IF Sbjct: 197 MNEIYLILSEKNPETIVKLMKHYRIDEKIF 226 >gi|161511462|ref|NP_991684.2| poly(A) polymerase I [Yersinia pestis biovar Microtus str. 91001] Length = 491 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 21/236 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 72 LKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL----VGR 127 Query: 76 SYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + ++ + ++ T R SD + + + RD + D+ RR Sbjct: 128 RFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRR 187 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A + Sbjct: 188 DFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL-D 246 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 247 MSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 302 >gi|292486910|ref|YP_003529780.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora CFBP1430] gi|292900695|ref|YP_003540064.1| multifunctional CCA-adding tRNA nucleotidyltransferase/2'-nucleotidase/2',3'-cyclic phosphodiesterase/phosphatase [Erwinia amylovora ATCC 49946] gi|291200543|emb|CBJ47672.1| multifunctional Cca protein [includes: CCA-adding enzyme (tRNA nucleotidyltransferase); 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Erwinia amylovora ATCC 49946] gi|291552327|emb|CBA19372.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora CFBP1430] Length = 408 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 86/360 (23%), Positives = 157/360 (43%), Gaps = 55/360 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L++L ++D D + P +++++ + + P + + + Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPRQMLQLGYQQIGRDFPVFLHPDS-----HE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R G V ++ + D RRD TINA+ D G D GG + Sbjct: 57 EYALARTERKS--GQGYTGFVCYSAPDVTLEQDLARRDLTINAIARDTDGNYYDPYGGRS 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL+ R ++ + A + ED LR+LR RF A + + N ++ L+ ++ L+ Sbjct: 115 DLQQRLLRHVSAAFN---EDPLRVLRVARFAARFADLNFRIADETLALMQTMTDSGELQH 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L++ER+W E L+ NP + + G +F + LD+L V A + + Sbjct: 172 LTAERVWKETESALQTPNPQVFFQVLRDCGALAVLFPE-----LDKLYGV-PAPAKWHPE 225 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 ID+ + ++ L+MA + S EIR+ + F + K L+ PE + Sbjct: 226 IDTGVHTLM---------TLAMAARLSPEIEIRFAAL-FHDVG---KALTPPEKWPSHHG 272 Query: 320 YGD------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKKP 361 +G + +L++ AL + + HQ ++ + + W+KP Sbjct: 273 HGPAGVPLVAALCERLRVPNALRDLALLVTEFHDLVHTIQHQPPVQLVALFDRVDAWRKP 332 >gi|22127403|ref|NP_670826.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis KIM 10] gi|45442728|ref|NP_994267.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis biovar Microtus str. 91001] gi|108809131|ref|YP_653047.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis Antiqua] gi|108810675|ref|YP_646442.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis Nepal516] gi|145597744|ref|YP_001161820.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis Pestoides F] gi|150260318|ref|ZP_01917046.1| tRNA nucleotidyltransferase [Yersinia pestis CA88-4125] gi|162420327|ref|YP_001604913.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis Angola] gi|165924844|ref|ZP_02220676.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939885|ref|ZP_02228424.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009040|ref|ZP_02229938.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212241|ref|ZP_02238276.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398461|ref|ZP_02303985.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418788|ref|ZP_02310541.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425148|ref|ZP_02316901.1| multifunctional CCA protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470407|ref|ZP_02335111.1| multifunctional CCA protein [Yersinia pestis FV-1] gi|218927843|ref|YP_002345718.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis CO92] gi|229837329|ref|ZP_04457492.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis Pestoides A] gi|229840541|ref|ZP_04460700.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842911|ref|ZP_04463063.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis biovar Orientalis str. India 195] gi|229900869|ref|ZP_04515993.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis Nepal516] gi|270487756|ref|ZP_06204830.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis KIM D27] gi|294502720|ref|YP_003566782.1| tRNA nucleotidyltransferase [Yersinia pestis Z176003] gi|73619909|sp|Q8ZI64|CCA_YERPE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|122382757|sp|Q1C370|CCA_YERPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|122385242|sp|Q1CMD8|CCA_YERPN RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233892|sp|A4THT5|CCA_YERPP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702097|sp|A9R7D9|CCA_YERPG RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|21960492|gb|AAM87077.1|AE013956_2 tRNA nucleotidyl transferase [Yersinia pestis KIM 10] gi|45437594|gb|AAS63144.1| tRNA nucleotidyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|108774323|gb|ABG16842.1| tRNA nucleotidyltransferase [Yersinia pestis Nepal516] gi|108781044|gb|ABG15102.1| tRNA nucleotidyltransferase [Yersinia pestis Antiqua] gi|115346454|emb|CAL19327.1| tRNA nucleotidyltransferase [Yersinia pestis CO92] gi|145209440|gb|ABP38847.1| tRNA nucleotidyltransferase [Yersinia pestis Pestoides F] gi|149289726|gb|EDM39803.1| tRNA nucleotidyltransferase [Yersinia pestis CA88-4125] gi|162353142|gb|ABX87090.1| multifunctional CCA protein [Yersinia pestis Angola] gi|165912196|gb|EDR30834.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923044|gb|EDR40195.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992379|gb|EDR44680.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206987|gb|EDR51467.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962782|gb|EDR58803.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050965|gb|EDR62373.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055911|gb|EDR65692.1| multifunctional CCA protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682208|gb|EEO78300.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis Nepal516] gi|229690178|gb|EEO82235.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis biovar Orientalis str. India 195] gi|229696907|gb|EEO86954.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705452|gb|EEO91462.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis Pestoides A] gi|262364697|gb|ACY61254.1| tRNA nucleotidyltransferase [Yersinia pestis D182038] gi|270336260|gb|EFA47037.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis KIM D27] gi|294353179|gb|ADE63520.1| tRNA nucleotidyltransferase [Yersinia pestis Z176003] gi|320016790|gb|ADW00362.1| Methenyltetrahydrofolate cyclohydrolase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 412 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL V + D + P++++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPV-----FLHPVSHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD T+NA+ G+ ID G DL NR Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF A + ++ L++++ L L+ ER Sbjct: 120 VLRHVSDAFG---EDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E K L+ ++P + + G +F +++ + Sbjct: 177 VWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERL 213 >gi|315127498|ref|YP_004069501.1| tRNA nucleotidyl transferase [Pseudoalteromonas sp. SM9913] gi|315016012|gb|ADT69350.1| tRNA nucleotidyl transferase [Pseudoalteromonas sp. SM9913] Length = 418 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 13/209 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N+ +D D VM +P + K+ + Sbjct: 15 LVGGAVRDKLLNIQSKDNDYVVIGETPEVMEALG-----FLPIGSDFPVYLHPHTKEEYA 69 Query: 91 I--TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 + T +S G + D RRD TIN++ D+ +ID G +DL+N+ Sbjct: 70 LGRTERKSGKGYTGFVVDASPNVTLEEDLARRDLTINSMALDENDTIIDPFNGQDDLKNK 129 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---NIDSDGLVASIKAKKGLKILSSERI 205 ++ A +ED +R+LR RF A YG + + + L+ +K K L+ L ER+ Sbjct: 130 VLRHTTQA---FVEDPVRVLRIARFLARYGSEWSIHPSTTALMQELKNKGELEHLVPERV 186 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 W E K L K+P + GIF EI Sbjct: 187 WLETEKALGEKHPELYFQALDGLGIFPEI 215 >gi|145630638|ref|ZP_01786417.1| polyA polymerase [Haemophilus influenzae R3021] gi|144983764|gb|EDJ91214.1| polyA polymerase [Haemophilus influenzae R3021] Length = 452 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ ++ + LK + R++ E KLL+A + + G+F+ Sbjct: 206 KLDMFLEK--PSEQPISELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|241758902|ref|ZP_04757015.1| multifunctional CCA protein [Neisseria flavescens SK114] gi|241321110|gb|EER57323.1| multifunctional CCA protein [Neisseria flavescens SK114] Length = 420 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 22/264 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGGAVRD L+ L V+D D ++ + ++ Y+ + + Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDW--VVVGADAQNMLAQG-YQPVGKDFPV----FLHPDS 59 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 60 HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGTIIDPFGGQQ 119 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A YG + D L+ + L + Sbjct: 120 DLAAGILRHVSPA---FAEDPVRILRIARFAARYGFQIADETMSLMRQMVENGEADALVA 176 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E+ K L KNP I + G K + + LD L V + + +IDS Sbjct: 177 ERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPE-----LDALFGVPQRAD-YHPEIDS 230 Query: 263 LLRFIVLISWQDKKSILSMAKKFS 286 + ++++ + + LS+A++++ Sbjct: 231 GIHTLMVVQRAAEMN-LSLAERYA 253 >gi|226309497|ref|YP_002769459.1| tRNA nucleotidyltransferase [Rhodococcus erythropolis PR4] gi|226188616|dbj|BAH36720.1| putative tRNA nucleotidyltransferase [Rhodococcus erythropolis PR4] Length = 483 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 6/219 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P++V + K T I +GTI I + + Sbjct: 45 LVGGSVRDAILGRFSGDLDFTTDARPEKVQALLKGWVDKQWDTGIEFGTISAIKHGQEIE 104 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R V + D +RRDFT+NA+ AD +D + G++ L Sbjct: 105 ITTFRADAYDRVSRNPIVEYGTTLADDLVRRDFTVNAMAMKIGADGSYTFVDPLNGMDAL 164 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + + +D LR+LR RF + G +++ A + ++ +++ER+ Sbjct: 165 LAGELDTPSAPENSFNDDPLRMLRAARFVSQLG-FTLNNRVFEAIKEMASQIERITAERV 223 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+NK++ P++ I M + G+ + +V ++ L+ Sbjct: 224 QVELNKMILGMYPVDGINMMVDSGLAAYVLPEVPQMKLE 262 >gi|157960799|ref|YP_001500833.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella pealeana ATCC 700345] gi|189081879|sp|A8H161|CCA_SHEPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157845799|gb|ABV86298.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella pealeana ATCC 700345] Length = 412 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D + P++++ + K P + T ++Y Sbjct: 5 LVGGAVRDKLLKLPVKDHDYMVVGATPEQMLSLGYNQVGKDFPVFLHPKT-----GQEYA 59 Query: 90 DITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R G ++ T + D LRRD TINA+ D G + D G+ DL R Sbjct: 60 LARTERKTAAGYGGFSVDAAPTVTLEQDLLRRDLTINAIAQDDAGNLYDPYNGIADLEKR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHY-GEK---NIDSDGLVASIKAKKGLKILSSER 204 ++ + DA +ED LR+LR RF A + G K ++ L+ ++ L+ L++ER Sbjct: 120 ILRHVSDA---FVEDPLRVLRVARFAARFHGLKFTIAPETLSLMTTLSRSGELEALTAER 176 Query: 205 IWSEINKLLEAKNP 218 ++ E++K L NP Sbjct: 177 VYLELDKALSTDNP 190 >gi|153997558|ref|ZP_02022658.1| poly(A) polymerase [Yersinia pestis CA88-4125] gi|149289195|gb|EDM39275.1| poly(A) polymerase [Yersinia pestis CA88-4125] Length = 502 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 81 NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL----V 136 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 137 GRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQ 196 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 197 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL 256 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 257 -DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 313 >gi|22124701|ref|NP_668124.1| poly(A) polymerase I [Yersinia pestis KIM 10] gi|108808891|ref|YP_652807.1| poly(A) polymerase I [Yersinia pestis Antiqua] gi|108810855|ref|YP_646622.1| poly(A) polymerase I [Yersinia pestis Nepal516] gi|145600216|ref|YP_001164292.1| poly(A) polymerase I [Yersinia pestis Pestoides F] gi|153948549|ref|YP_001402297.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 31758] gi|165936780|ref|ZP_02225347.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275] gi|170025685|ref|YP_001722190.1| poly(A) polymerase I [Yersinia pseudotuberculosis YPIII] gi|218930416|ref|YP_002348291.1| poly(A) polymerase I [Yersinia pestis CO92] gi|270489241|ref|ZP_06206315.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27] gi|21957515|gb|AAM84375.1|AE013681_5 poly(A) polymerase I [Yersinia pestis KIM 10] gi|108774503|gb|ABG17022.1| poly(A) polymerase [Yersinia pestis Nepal516] gi|108780804|gb|ABG14862.1| poly(A) polymerase [Yersinia pestis Antiqua] gi|145211912|gb|ABP41319.1| poly(A) polymerase [Yersinia pestis Pestoides F] gi|152960044|gb|ABS47505.1| poly(A) polymerase [Yersinia pseudotuberculosis IP 31758] gi|165915429|gb|EDR34039.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275] gi|169752219|gb|ACA69737.1| poly(A) polymerase [Yersinia pseudotuberculosis YPIII] gi|262363166|gb|ACY59887.1| poly(A) polymerase I [Yersinia pestis D106004] gi|270337745|gb|EFA48522.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27] Length = 491 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 70 NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL----V 125 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 126 GRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQ 185 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 186 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL 245 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 246 -DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 302 >gi|28198114|ref|NP_778428.1| polynucleotide adenyltransferase [Xylella fastidiosa Temecula1] gi|182680742|ref|YP_001828902.1| poly(A) polymerase [Xylella fastidiosa M23] gi|28056174|gb|AAO28077.1| polynucleotide adenyltransferase [Xylella fastidiosa Temecula1] gi|182630852|gb|ACB91628.1| poly(A) polymerase [Xylella fastidiosa M23] gi|307579206|gb|ADN63175.1| polynucleotide adenyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 394 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 28/239 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F R Sbjct: 19 PNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRL---- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADSL 118 + ++ ++ ++ T R++ L+ D Y + + D+ Sbjct: 75 IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTI------EDDAT 128 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT NALY + V DYVGG D+++R ++ IGD R ED +R+LR R A Sbjct: 129 RRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAAKL 188 Query: 178 GEKNIDSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G + I++ G I GL ++ R++ E+ KL + + + + + + G+ +F Sbjct: 189 GFE-IEA-GTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVVSFEALEDFGLIDVLF 245 >gi|15602729|ref|NP_245801.1| hypothetical protein PM0864 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721175|gb|AAK02948.1| PcnB [Pasteurella multocida subsp. multocida str. Pm70] Length = 501 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 34/245 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + + I+ L++ ++ IVGG +RD L+ +D D+AT LP+++ IF + V Sbjct: 80 NRNALGIVEKLHRHGFEAYIVGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRLV- 138 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWK 114 + I+ + ++ T R+ L+ D Y + + Sbjct: 139 --GRRFRLAHIMFGRDVIEVATFRASHNENNHESLAKQSKEGMLLRDNVYGTL------E 190 Query: 115 ADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF Sbjct: 191 QDAERRDFTVNALYYNPQDNTLRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRF 250 Query: 174 FAH---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A + EK S+ + + LK + R++ E KLL+A + + G+ Sbjct: 251 MAKLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGL 306 Query: 231 FKEIF 235 F+++F Sbjct: 307 FEQLF 311 >gi|152978747|ref|YP_001344376.1| polynucleotide adenylyltransferase region [Actinobacillus succinogenes 130Z] gi|171704276|sp|A6VN94|CCA_ACTSZ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|150840470|gb|ABR74441.1| Polynucleotide adenylyltransferase region [Actinobacillus succinogenes 130Z] Length = 400 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L++L V+D D + PD ++ + K P I T + Sbjct: 5 LVGGAVRDQLLHLPVKDRDWLVVGSTPDELLSLGYLQVGKDFPVFIHPET--------HE 56 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F+ D + D +RRD TINA+ D+ GK+ D G+ DL Sbjct: 57 EYALARTEKKSGSGYTGFICDFSPDITLEDDLIRRDLTINAIAQDKNGKLYDPYHGIEDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILS 201 NR ++ I + ED LR+LR RF F H G ++ L+ + + L+ L+ Sbjct: 117 NNRLLRHISPSFE---EDPLRVLRVARFAAKFYHLGFAIAPETLELMKKLSTQGELQHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E K L +NP Sbjct: 174 AERVWLETEKALMTENP 190 >gi|166711861|ref|ZP_02243068.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 455 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 18/233 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F R Sbjct: 41 NALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRNCRL----I 96 Query: 74 SISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++ ++ ++ T R++ + +GR + + D++RRDFT N Sbjct: 97 GRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFTCN 156 Query: 126 ALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID- 183 ALY A + V DY GG D++ R +K IGD R ED +R+LR R + N + Sbjct: 157 ALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLASKL---NFEI 213 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G I G L + R++ EI KL + + + + + G+F +F Sbjct: 214 EAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLFGALF 266 >gi|318604181|emb|CBY25679.1| tRNA nucleotidyltransferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 412 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL + + D + P++++ + K P + + ++Y Sbjct: 5 LVGGAVRDSLLNLPITEQDWVVVGATPEQLLAQGYQQVGKDFPV-----FLHPVTHEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ +G++ D G D+ R Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQQDIEKR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + DA ED LR+LR RF FAH G ++ L+A++ L L+ ER Sbjct: 120 VLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELSALTLER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E K L+ ++P + + G +F +++ + Sbjct: 177 VWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERL 213 >gi|310830873|ref|YP_003965974.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Paenibacillus polymyxa SC2] gi|309250340|gb|ADO59906.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Paenibacillus polymyxa SC2] Length = 319 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 8/197 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I L+ KG + + VGG VRD L + D +IAT P+++ IF + + ++ Sbjct: 9 IEKLMEKGFE-AVYVGGCVRDKLRGAAPDDYNIATNATPEQITEIFDSSLIDEVEKNVGV 67 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 + I D+ T RSD+ +V + DS RRDFTINA+ G +ID Sbjct: 68 MLVDGI------DVATYRSDIYHKAGKPEVKLVGTFFQDSTRRDFTINAMAETVDGTIID 121 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 + G DL + I+ + + HR +ED RILR + A I+ L A + + L Sbjct: 122 HHKGRQDLNKKLIRAVWNPLHRFIEDPSRILRGM-YLAAKLSFTIEKRTLQAMKDSVRLL 180 Query: 198 KILSSERIWSEINKLLE 214 + + +ERI + K+++ Sbjct: 181 ETIPNERIAKILRKVMK 197 >gi|88858370|ref|ZP_01133012.1| poly(A) polymerase I [Pseudoalteromonas tunicata D2] gi|88819987|gb|EAR29800.1| poly(A) polymerase I [Pseudoalteromonas tunicata D2] Length = 457 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 18/236 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I +L L G + +VGG +RD L+ ++ +D D+ T P++V R+F R Sbjct: 31 PNAIKVLYRLKDGGYDAYLVGGCIRDVLLGVTPKDFDVVTNATPEQVKRLFRNCRI---- 86 Query: 73 TSISYGTIKIICRKKYFDITTLR------------SDLITDGRYAKVVFTRDWKADSLRR 120 + I+ ++ ++ T+R S T+G+ + D+ RR Sbjct: 87 IGRRFRLAHIVFGREIIEVATMRGHHEGSEDKNPISQSSTEGQLLRDNVFGSIDEDAERR 146 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF+INALY I DY G++ +++R I+ IG R ED +R+LR R FA + Sbjct: 147 DFSINALYYSINDYSIHDYANGMDAIKHRRIELIGHPETRYREDPVRMLRAIR-FATKLD 205 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I D + L + + R++ E+ KL V + G+FK++F Sbjct: 206 MTIAPDTEKPIYELADLLSNIPAARLFEEVLKLFLNGKAEQNFVALRQYGLFKQLF 261 >gi|238785058|ref|ZP_04629054.1| Poly(A) polymerase [Yersinia bercovieri ATCC 43970] gi|238714030|gb|EEQ06046.1| Poly(A) polymerase [Yersinia bercovieri ATCC 43970] Length = 473 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 52 NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL----V 107 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 108 GRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQALNGMLLRDNIFGTIEDDAQ 167 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 168 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL 227 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 228 -DMTISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 284 >gi|313835239|gb|EFS72953.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA2] gi|314929206|gb|EFS93037.1| tRNA adenylyltransferase [Propionibacterium acnes HL044PA1] gi|314970839|gb|EFT14937.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA3] gi|328905733|gb|EGG25509.1| tRNA adenylyltransferase [Propionibacterium sp. P08] Length = 499 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 3/217 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 61 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQRTHATWDIGRAFGTIGAQINDWVVE 120 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ + D +RRDFT+NA+ + D GL D+ Sbjct: 121 VTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAATRTFSDPYAGLADIVAG 180 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + D A ++I+S+ER+ E Sbjct: 181 VLRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTGDVRAAMTDMASRIEIISAERVRDE 239 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++K L +P + + GI + ++ + L++ Sbjct: 240 LSKTLLTDHPREGLDLLVTTGIADYVLPELPALRLER 276 >gi|307256202|ref|ZP_07537989.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865383|gb|EFM97279.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 510 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + + ++I Sbjct: 86 NALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGR-QCRLI-- 142 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRDF 122 + I+ + +++ T R+D + + +KV + RD + D+ RRDF Sbjct: 143 GRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRDF 202 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 ++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A + Sbjct: 203 SVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKL-DMF 261 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KL ++ M G+F+++F Sbjct: 262 LDKASDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLF 315 >gi|262278360|ref|ZP_06056145.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus RUH2202] gi|262258711|gb|EEY77444.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus RUH2202] Length = 412 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 18/191 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDSLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ G++ D GG DL Sbjct: 60 LARTERKS--GKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGRIYDPYGGQTDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+T++ + +A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKTLRHVSEA---FAEDPLRVLRVARFAARYSSYGFHIASETLQLMQTMAESGELDALTP 174 Query: 203 ERIWSEINKLL 213 ER+W E ++ L Sbjct: 175 ERVWKETSRAL 185 >gi|78047370|ref|YP_363545.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924974|ref|ZP_08186400.1| poly(A) polymerase [Xanthomonas perforans 91-118] gi|78035800|emb|CAJ23491.1| Polynucleotide adenylyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544637|gb|EGD15994.1| poly(A) polymerase [Xanthomonas perforans 91-118] Length = 455 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 18/212 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L + + +VGGAVRD L+ +D D+AT P+ V +F R Sbjct: 40 PNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRNCRL---- 95 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFTI 124 + ++ ++ ++ T R+++ + +GR + + D++RRDFT Sbjct: 96 IGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIRRDFTC 155 Query: 125 NALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY A + V DY GG D++ R +K IGD R ED +R+LR R A N D Sbjct: 156 NALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLAAKL---NFD 212 Query: 184 -SDGLVASIKAKKG-LKILSSERIWSEINKLL 213 G I G L + R++ EI KL Sbjct: 213 IEAGTAEPIPRLAGLLSEAAPARLFEEILKLF 244 >gi|149911043|ref|ZP_01899671.1| putative tRNA nucleotidyltransferase [Moritella sp. PE36] gi|149805869|gb|EDM65857.1| putative tRNA nucleotidyltransferase [Moritella sp. PE36] Length = 386 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 139/316 (43%), Gaps = 43/316 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L++L V+D D + P ++ + K P + + +++Y Sbjct: 5 LVGGAVRDKLLSLPVKDKDFVVVGATPAEMLAQGYQQVGKDFPVFLHPNS-----KQEYA 59 Query: 90 DITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R S YA T + D +RRD TINA+ D+ G VID + DL Sbjct: 60 LARTERKSGSGYTGFTCYAAPDVT--LEQDLVRRDLTINAMVEDEHGHVIDPLNARLDLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 NR ++ I ++ ED LR+LR RF A + + ++ L+ + L L+ Sbjct: 118 NRLLRHISESFS---EDPLRVLRVARFAARFHQLGFTIAKETLTLMQEMTQAGDLAELTP 174 Query: 203 ERIWSEINKLLEAKNP----------------LNAIVHMYNGGIFKEIFLDVQEISLDQL 246 ER+W E+ K L A NP L + ++N + K D I L Sbjct: 175 ERVWQEVEKTLSADNPEVFFQVLREIGALAVILPELDALFNLAV-KNSENDSTSIGQQAL 233 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQD--KKSILSMAKKFSLPREIR--YFLISFFNCN 302 +Q+ +Q D +RF L+ D + SI ++AK+ +P E R +S N Sbjct: 234 TQL---KQSASLSTDLAVRFAALMQQLDHHQISIKALAKRCKVPNEHRDLALQVSAQQEN 290 Query: 303 F-NQKTLSIPEIKKLF 317 N ++L +I +LF Sbjct: 291 IHNARSLDPADIIRLF 306 >gi|261378744|ref|ZP_05983317.1| multifunctional CCA protein [Neisseria cinerea ATCC 14685] gi|269144899|gb|EEZ71317.1| multifunctional CCA protein [Neisseria cinerea ATCC 14685] Length = 417 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 96/216 (44%), Gaps = 15/216 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L+ L V+D D R M P + + K Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADARTM-----LAQGFQPVGKDFPVF--LHPKT 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 55 HEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQQ 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL+ ++ + A ED +RILR RF A YG E ++ L+ + L + Sbjct: 115 DLKAGILRHVSPA---FDEDPVRILRTARFAARYGFEIAEETMKLMRKMVENGEADALVA 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ K L KNP I + G K + +V Sbjct: 172 ERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEV 207 >gi|322488104|emb|CBZ23351.1| putative tRNA nucleotidyltransferase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 523 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 100/231 (43%), Gaps = 25/231 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG----TIKII--- 83 + GG VRD L+ L DIDIA + ++V +++G T+ +I Sbjct: 38 VAGGWVRDMLLGLHSNDIDIAIETHAGTKLVTGEVFAHRVSEYQLAHGGRSHTVSVIRAN 97 Query: 84 -CRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 K+ + T LR+D+ T V D+ RRDFTINAL+ + Sbjct: 98 PALSKHIETATVRVHEIPVEFCALRTDVYTSESRIPQVRPAAPLEDAQRRDFTINALFYN 157 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G V DY GL DLR R I+ + ++D LR+LR RF G N D + Sbjct: 158 LHTGMVEDYTTGLEDLRLRIIRCPLEPRTTFMDDPLRLLRGVRFVGQLGALNFSLDESIT 217 Query: 190 SIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 S L +L S ER+ E K++ A +P I +++ I + I L Sbjct: 218 SCVDDSLLDVLQQKVSRERVGKEFVKMMVAAHPERCIALLHDMHILQHILL 268 >gi|148545680|ref|YP_001265782.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas putida F1] gi|166233872|sp|A5VXI8|CCA_PSEP1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|148509738|gb|ABQ76598.1| Polynucleotide adenylyltransferase region [Pseudomonas putida F1] Length = 368 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 119/291 (40%), Gaps = 27/291 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID ++ V + +K Y+ + + K + Sbjct: 6 VGGAVRDRLLGRPVSDIDW--LVVGATVEEMLAKG-YRPVGADFPV----FLHPKTGEEY 58 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 R++ + Y F + D +RRD TINA+ D+ G V D G DL Sbjct: 59 ALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKQDLDK 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ I A L+ L++E Sbjct: 119 RLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEISLDQLSQVIEAEQVFEWKID 261 R W EI + L P + G +E+ LD +L L Q EQ + Sbjct: 176 RSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDSSRTLAALEQAAVHEQPLHVRWA 235 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLSIP 311 LLR + SI ++ ++ PRE + + C + L +P Sbjct: 236 CLLRGL------SPTSIKAVNQRLKAPRECQELAMLTGECLAQGNQALELP 280 >gi|261211541|ref|ZP_05925829.1| tRNA nucleotidyltransferase [Vibrio sp. RC341] gi|260839496|gb|EEX66122.1| tRNA nucleotidyltransferase [Vibrio sp. RC341] Length = 403 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 99/221 (44%), Gaps = 28/221 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLSAGFQAVGKDFPVFLHPKSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V + D LRRD TINA+ D+ G+VID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLEE---DLLRRDLTINAMAQDESGQVIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L R ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAARVLRHVSPA---FMEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + L++ER+W E +K L +P + + N G + ++ Sbjct: 170 QHLTAERVWQEWHKSLSTHHPEVFLQVLRNCGALAVVLPEI 210 >gi|219870496|ref|YP_002474871.1| polyA polymerase [Haemophilus parasuis SH0165] gi|219690700|gb|ACL31923.1| polyA polymerase [Haemophilus parasuis SH0165] Length = 477 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 16/235 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S+ I I++ L K + +VGG +RD L+ +D DIAT P+ + +IF + + ++I Sbjct: 51 SNAIAIINKLQKNGYEVYMVGGCIRDLLLGQKAKDFDIATNARPEEIQKIFGR-QCRLI- 108 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRD 121 + I+ ++ +++ T R+D ++ + +K + RD + D+ RRD Sbjct: 109 -GRRFRLAHIVFGREIYEVATFRADHHSNATEKMSKTSEAGMLLRDNVYGTLREDAERRD 167 Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 F++NA Y D +I D+ G++DL+ + IGD R ED +R+LR RF A + Sbjct: 168 FSVNAFYYDVSHNLIYDFFNGIDDLKAGKLALIGDPVTRYQEDPVRMLRAIRFMAKL-DM 226 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D K LK + + R++ E KLL++ + G+F+++F Sbjct: 227 FLDKASDEPIRKMAVLLKNIPAARLFDESLKLLQSGYGHKTYELLRKYGLFEQLF 281 >gi|332534880|ref|ZP_08410702.1| tRNA nucleotidyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332035679|gb|EGI72168.1| tRNA nucleotidyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 419 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 13/209 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+N+ +D D + M +P + K+ + Sbjct: 10 LVGGAVRDKLLNIKSKDNDYVVIGETPKTMESLG-----FVPIGSDFPVYLHPKTKEEYA 64 Query: 91 I--TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 + T +S G T + D RRD TIN++ D+ G +ID G DL+N+ Sbjct: 65 LGRTERKSGKGYTGFVVDASPTVTLEEDLARRDLTINSMALDEHGNIIDPFNGQTDLQNK 124 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---NIDSDGLVASIKAKKGLKILSSERI 205 ++ A +ED +R+LR RF A YG + + L+ +K K L L ER+ Sbjct: 125 ILRHTTAA---FVEDPVRVLRIARFLARYGSDWRIHPSTYALMRELKNKGELNHLVPERV 181 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 W E K L K+P + GIF E+ Sbjct: 182 WLETEKALGEKHPELYFEALQGLGIFPEL 210 >gi|210633527|ref|ZP_03297796.1| hypothetical protein COLSTE_01712 [Collinsella stercoris DSM 13279] gi|210159122|gb|EEA90093.1| hypothetical protein COLSTE_01712 [Collinsella stercoris DSM 13279] Length = 452 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 3/198 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +L ++ IVGG VRD+LM DIDI + ++ V+ + + + Sbjct: 1 MLRVLESAGLEAWIVGGWVRDALMCAPGHDIDICCSGSWEQSAAALRAEGIAVVESGVKF 60 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDW-KADSLRRDFTINALYADQQGKV 135 G I + + ++T R D TDGR+ + V + D RRDFT+NA+ + + Sbjct: 61 GGITAVLDGERIEVTAYRLDGFYTDGRHPESVRRAQCVEEDLARRDFTVNAMAWHPRRGL 120 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G DL R I+ +G+ R ED LR+LR RF + ++D+ A Sbjct: 121 LDLYDGRGDLERRQIRAVGEPRRRFEEDALRMLRAVRFACRL-DFSMDAATASALDSCAP 179 Query: 196 GLKILSSERIWSEINKLL 213 L ++ ER+ E+ +L Sbjct: 180 LLDAVARERVGIELEGIL 197 >gi|83644220|ref|YP_432655.1| tRNA nucleotidyltransferase [Hahella chejuensis KCTC 2396] gi|123534381|sp|Q2SM94|CCA_HAHCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|83632263|gb|ABC28230.1| tRNA nucleotidyltransferase [Hahella chejuensis KCTC 2396] Length = 422 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVM-----RIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD+L+ L V+D D + P++++ ++ + + P S + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGATPEQMLDQGYQQVGADFPVFLHPESKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D D + D D LRRD TINA+ D G ++D G D Sbjct: 65 RKSGKGYTGFICDFSPD------ISLED---DLLRRDLTINAMAMDDDGNLVDPFNGRQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L R ++ + A ED LR+LR RF + Y + ++ L+ I+A LK L Sbjct: 116 LEARILRHVSPA---FTEDPLRVLRVARFASRYADLGFTVAPETLQLMQDIQASGELKAL 172 Query: 201 SSERIWSEINKLLEAKNP 218 ++ER+W E + L K P Sbjct: 173 TAERVWQETVRALGQKQP 190 >gi|71276370|ref|ZP_00652647.1| Poly(A) polymerase [Xylella fastidiosa Dixon] gi|71898647|ref|ZP_00680817.1| Poly(A) polymerase [Xylella fastidiosa Ann-1] gi|71901428|ref|ZP_00683518.1| Poly(A) polymerase [Xylella fastidiosa Ann-1] gi|170729425|ref|YP_001774858.1| polynucleotide adenyltransferase [Xylella fastidiosa M12] gi|71162832|gb|EAO12557.1| Poly(A) polymerase [Xylella fastidiosa Dixon] gi|71728799|gb|EAO30940.1| Poly(A) polymerase [Xylella fastidiosa Ann-1] gi|71731594|gb|EAO33655.1| Poly(A) polymerase [Xylella fastidiosa Ann-1] gi|167964218|gb|ACA11228.1| polynucleotide adenyltransferase [Xylella fastidiosa M12] Length = 421 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 28/239 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F R Sbjct: 19 PNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRL---- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADSL 118 + ++ ++ ++ T R++ L+ D Y + + D+ Sbjct: 75 IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTI------EDDAT 128 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT NALY + V DYVGG D+++R ++ IGD R ED +R+LR R A Sbjct: 129 RRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAAKL 188 Query: 178 GEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G + I++ G I G L ++ R++ E+ KL + + + + + + G+ +F Sbjct: 189 GFE-IEA-GTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVVSFEALEDFGLIDVLF 245 >gi|298528178|ref|ZP_07015582.1| Polynucleotide adenylyltransferase region [Desulfonatronospira thiodismutans ASO3-1] gi|298511830|gb|EFI35732.1| Polynucleotide adenylyltransferase region [Desulfonatronospira thiodismutans ASO3-1] Length = 898 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 102/398 (25%), Positives = 171/398 (42%), Gaps = 57/398 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK-KYFD 90 VGG VRD L+ S D+D+ + R ++ + + T IIC + D Sbjct: 491 VGGFVRDILLGRSNLDVDLVVEGDGIKFARALAEKLDARVREHQKFRTAVIICADGRKID 550 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDLR 146 + T R + +V K D RRDF+INAL G+++D+ GG DL+ Sbjct: 551 VATARLEYYEHPAALPMVELSSIKMDLYRRDFSINALAVHLNPQNMGRLVDFFGGQRDLK 610 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERI 205 ++ I+ + +ED RI+R RF +G + ++ L+ + LS RI Sbjct: 611 DKVIRVLHSL--SFVEDPTRIVRAIRFEQRFGFRIGAQTEKLIKNALELNIFHQLSGSRI 668 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW------- 258 + E+ + E PL ++ M N G+ K I + ++S + + + E E+V W Sbjct: 669 FHELQMIFEEDTPLPCLIRMENYGLLKHIH-PMLKLSSNVKNILTETEKVINWFQLLYLE 727 Query: 259 -KID-------SLLRFIVLISWQDKKSILSMAKK-----FSLPREIRYFLISFFNCNFNQ 305 KID LL I + + ++K FSL +I + S + +Q Sbjct: 728 EKIDKWILYMLGLLNHINEVQAGIIMQRFNFSQKKTRHIFSLRSQINSAMSSISAWHQDQ 787 Query: 306 KTLS--------IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 LS +P ++ L +L +V +L+ +++ HY +TH L DI Sbjct: 788 GKLSSLYFILNPLP-LEGLLFLMA-RVQKEELRKYVS-HY--ITH---------LRDI-- 831 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 +P ++G D+ K G+ PG + G IL K I+ Sbjct: 832 --QP--QISGRDLKKMGLTPGPEFGRILKELKAAQIDG 865 >gi|227327661|ref|ZP_03831685.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 452 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R Sbjct: 29 NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL----V 84 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----------VFTRD-----WKADSL 118 + I+ + ++ T R +V + RD + D+ Sbjct: 85 GRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEVKNSSQQAQSGMLLRDNIFGSVEEDAQ 144 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A Sbjct: 145 RRDFSINSLYYSISDFSVRDYTDGLNDLRQGIIRMIGDPETRYREDPVRMLRAVRFAA 202 >gi|85058236|ref|YP_453938.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Sodalis glossinidius str. 'morsitans'] gi|123520219|sp|Q2NWE2|CCA_SODGM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|84778756|dbj|BAE73533.1| tRNA nucleotidyl transferase [Sodalis glossinidius str. 'morsitans'] Length = 415 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 22/220 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P ++ + K P + + R+ Sbjct: 2 KKYLVGGAVRDGLLQLPVKERDWVVVGATPQEMLAQGYQHVGKDFPVFLHPDS-----RE 56 Query: 87 KYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 +Y T R + I YA T + D RRD TINA+ D +G +ID Sbjct: 57 EYALARTERKSGQGYTGFIC---YASPEVT--LEEDLRRRDLTINAIARDDEGNLIDPYQ 111 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLK 198 G D+R R ++ + DA ED LR+LR RF A + N I + + + L Sbjct: 112 GQQDIRQRWLRHVSDA---FGEDPLRVLRVARFAARFAHLNFRIAPETMALMQQMTDELP 168 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +L+ ER+W E + L +NP + + G K +F +V Sbjct: 169 LLAPERVWKETERTLATRNPQVYFQVLRDCGALKALFPEV 208 >gi|297572329|ref|YP_003698103.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arcanobacterium haemolyticum DSM 20595] gi|296932676|gb|ADH93484.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arcanobacterium haemolyticum DSM 20595] Length = 497 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 3/218 (1%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + S+ + + +VGG VRD+L+ L + D D T+ PD + + Sbjct: 40 ILELGSIFARNGHELAMVGGPVRDALLGLPIHDYDFTTSARPDETEELLASWGGAHWDIG 99 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +GTI ++TT R++ + R V + + D RRDFT+NA+ Sbjct: 100 REFGTIGASRDGLVVEVTTYRAEEYDAESRKPGVHYGDSLEGDVTRRDFTVNAMAIRLPS 159 Query: 134 -KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++ D GGL+DL ++ A +D LRI+R RF A G ++ D A + Sbjct: 160 MELADTTGGLDDLVAGVLRTPVTARQSFDDDPLRIMRAARFAAQLG-FDVADDVREAMTE 218 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 L+I+S ER+ +E+++L+ + +P + + G+ Sbjct: 219 MASRLEIVSVERVQAELHRLMISPHPRKGLELLVETGV 256 >gi|146329773|ref|YP_001209948.1| tRNA nucleotidyltransferase [Dichelobacter nodosus VCS1703A] gi|146233243|gb|ABQ14221.1| tRNA nucleotidyltransferase [Dichelobacter nodosus VCS1703A] Length = 357 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 122/290 (42%), Gaps = 55/290 (18%) Query: 31 IVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTR-YKVI---PTSISYGTIKI- 82 +VGGAVRD L+ L D D I T+ R R + V T Y +I Sbjct: 5 LVGGAVRDRLLGLDGSDRDWVVIGETMDSMRARGFRQVGRDFPVFLHPETGEEYALARIE 64 Query: 83 --ICRKKY---FDI---TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 I R FD TL DLI RRD TINA+ D+ G+ Sbjct: 65 RKIARGHQGFCFDFHQNITLEEDLI-------------------RRDLTINAMAEDENGQ 105 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASI 191 +ID GG D++ + ++ + A ED LR+LR RF FAH G + Sbjct: 106 LIDPYGGSADIQAKILRHVSPA---FSEDPLRVLRLMRFWARFAHLGFTIAPETLQLCGE 162 Query: 192 KAKKG-LKILSSERIWSEINKLLEAKNPLN-----AIVHMYNGGIFKEIFLDVQEISLDQ 245 A+ G L+ L++ER+W E K L+A NP A +H N + + S Q Sbjct: 163 MARSGELQTLTAERVWQECEKALKAPNPECFLMGLAQIHALN------VLFGATQPSARQ 216 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295 L+ + +++ + + W +K I ++ K+ LP++ Y+L Sbjct: 217 LAAM--NQRLMNTPTLEAHQRLARCLWHEKDLIAALKKQMPLPQKYHYWL 264 >gi|156975713|ref|YP_001446620.1| nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi ATCC BAA-1116] gi|156527307|gb|ABU72393.1| hypothetical protein VIBHAR_03448 [Vibrio harveyi ATCC BAA-1116] Length = 462 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 29/243 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R Sbjct: 41 LKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKADSL 118 + I+ + ++ T R L+ D Y + D+ Sbjct: 97 RFRLAHIMFGRDIIEVATFRGHHQEQKNKNVSQQSKEGMLLRDNVYGTI------DEDAE 150 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN++Y + I DY G+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RRDFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLRAIRFAVKL 210 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + S R++ E K+L++ + L + +F+++F Sbjct: 211 -DFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNLFQQLFPA 269 Query: 238 VQE 240 + E Sbjct: 270 IAE 272 >gi|108802356|ref|YP_642553.1| metal dependent phosphohydrolase [Mycobacterium sp. MCS] gi|108772775|gb|ABG11497.1| metal dependent phosphohydrolase [Mycobacterium sp. MCS] Length = 455 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 6/218 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+++ + T I +GT+ + + Sbjct: 11 LVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTGIEFGTVGVGKAGHRME 70 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R V + + D +RRDFT+NA+ A G+ D +GGL L Sbjct: 71 ITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITAAGPGEFHDPLGGLAAL 130 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R + + +D LR+LR RF + G + A + L ++ ER+ Sbjct: 131 RAKVLDTPSAPEVSFGDDPLRMLRAARFASQLG-FGVAPRVRTAMTEMAPQLSRITVERV 189 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +E++KLL +P+ I M G+ + +V + L Sbjct: 190 AAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRL 227 >gi|227112948|ref|ZP_03826604.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 452 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R Sbjct: 29 NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL----V 84 Query: 74 SISYGTIKIICRKKYFDITTLRSDLI----------TDGRYAKVVFTRD-----WKADSL 118 + I+ + ++ T R + + + RD + D+ Sbjct: 85 GRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEIKNSSQQAQSGMLLRDNIFGSVEEDAQ 144 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A Sbjct: 145 RRDFSINSLYYSISDFSVRDYTDGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAA 202 >gi|300721909|ref|YP_003711187.1| poly(A) polymerase I [Xenorhabdus nematophila ATCC 19061] gi|297628404|emb|CBJ88969.1| poly(A) polymerase I [Xenorhabdus nematophila ATCC 19061] Length = 455 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 110/240 (45%), Gaps = 19/240 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L++ +D DIAT P++V ++F R Sbjct: 33 NALKVLYRLNKSGFQAYLVGGGVRDLLLHKQPKDFDIATNATPEQVRKLFRNCRL----V 88 Query: 74 SISYGTIKIICRKKYFDITTLR--------SDLITDGRYAKVVFTRD-----WKADSLRR 120 + I+ ++ T R +D + + RD + D+ RR Sbjct: 89 GRRFRLAHIMFGPDVIEVATFRGPHDQVESNDRSQSHKAQSGMLLRDNIFGSVEEDAARR 148 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY + + DYVGG+ DL I+ IGD R ED +R+LR R FA + Sbjct: 149 DFTINSLYYGIEDFALRDYVGGMADLNEGIIRLIGDPEIRYREDPVRMLRAVR-FASKLD 207 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I+ + L + S R++ E KLL++ + + +F+ +F +Q Sbjct: 208 MTIEPATAEPIPRLAFLLNDIPSARLFEESLKLLQSGQGYSTYKLLCKYNLFQPLFPMIQ 267 >gi|295111141|emb|CBL27891.1| uncharacterized domain HDIG [Synergistetes bacterium SGP1] Length = 456 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 34/201 (16%) Query: 32 VGGAVRDSLMNL-------------------SVQDIDIATTILPDRVMRIFSKTRYKVIP 72 VGG VRDSL+ L + D DIAT P+ V I R P Sbjct: 24 VGGCVRDSLVPLIGTPQNPSDPASVRAILDCAPSDWDIATNAAPEHVRSILGG-RLAAKP 82 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + + T+ +ITT R T + D RDFT+NA+ + Sbjct: 83 -GLRHDTVMTSVDGTPVEITTFRGGAAT------------IEEDLACRDFTVNAMALNAD 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GG ND+R+ ++ +GD R ED LRILR RF A +G +I+ D + Sbjct: 130 GRLLDPFGGANDIRSGVLRAVGDPAERFREDGLRILRGLRFAAVFG-WDIEPDTALVMHM 188 Query: 193 AKKGLKILSSERIWSEINKLL 213 K L+ ++ ER +E+ K+L Sbjct: 189 EKDLLRDIAVERTRAELVKML 209 >gi|255017969|ref|ZP_05290095.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL F2-515] Length = 152 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA+ D+ + Sbjct: 67 GTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHFAL 126 Query: 136 IDYVGGLNDLRNRT 149 D G ++ ++ Sbjct: 127 HDPFSGQEAIKKQS 140 >gi|215488387|ref|YP_002330818.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O127:H6 str. E2348/69] gi|254813691|sp|B7UIW4|CCA_ECO27 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|215266459|emb|CAS10897.1| fused tRNA nucleotidyl transferase/2'3'-cyclicphosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O127:H6 str. E2348/69] Length = 412 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/359 (24%), Positives = 150/359 (41%), Gaps = 59/359 (16%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-----IKIIC 84 +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D K RRD TINAL D G++ID GL D Sbjct: 65 RKSGSGYTGFTCYAAPD-----VTLEDDLK----RRDLTINALAQDDNGEIIDPYNGLGD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ L Sbjct: 116 LQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G + +F ++ D L V A + +I Sbjct: 173 TPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSM S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTLM---------TLSMVAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 G + + +L++ L +++L H + I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|78224373|ref|YP_386120.1| Poly(A) polymerase, PcnB [Geobacter metallireducens GS-15] gi|78195628|gb|ABB33395.1| Poly(A) polymerase, PcnB [Geobacter metallireducens GS-15] Length = 457 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 125/284 (44%), Gaps = 42/284 (14%) Query: 17 NILSLLNKGEDKSCI---VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 N L +L + +D CI VGG VRD L+ +D D+AT P++V R+F R + Sbjct: 27 NALRVLYRLKDNGCIAYLVGGCVRDLLLGREPKDFDVATNATPNQVKRLFRNCRLVGRRF 86 Query: 69 KVIPTS-----ISYGTIKIICRKKYFDITTLR---SDLITDGRYAKV---------VFTR 111 ++ I T + + ++ D ++ +G ++ + R Sbjct: 87 RLAHIHYQDEIIEVATFRALAPEEPEDTAPAPVSPENVPGEGERPRLPRHVVSDEGMVLR 146 Query: 112 D-----WKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 D + D++RRDFT+NAL Y +IDY G+ DLR I+ IGD R ED + Sbjct: 147 DNVFGTPEEDAVRRDFTVNALAYNIADFSIIDYANGMEDLRRGVIRTIGDPLVRFTEDPV 206 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 R+LR RF A G ++ A + + ++ R++ E+ KL + + Sbjct: 207 RMLRAVRFAATLG-FTVEDATWQAIRELAPAITRATAPRLYEEVLKLFLSGEGERVYQLL 265 Query: 226 YNGGIFKEIF------LDVQEISLDQLSQVIEAEQVFEWKIDSL 263 G+F +F LD +EI SQV +A EW D + Sbjct: 266 RQAGLFSHLFPRFSAWLD-REIDGFPHSQVGKA---LEWADDQV 305 >gi|238791217|ref|ZP_04634856.1| Poly(A) polymerase [Yersinia intermedia ATCC 29909] gi|238729350|gb|EEQ20865.1| Poly(A) polymerase [Yersinia intermedia ATCC 29909] Length = 474 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 52 NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL----V 107 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 108 GRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQ 167 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 168 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL 227 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I + + L + R++ E KLL++ + + +F+ +F Sbjct: 228 -DMTISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 284 >gi|229846983|ref|ZP_04467089.1| probable poly polymerase [Haemophilus influenzae 7P49H1] gi|229810067|gb|EEP45787.1| probable poly polymerase [Haemophilus influenzae 7P49H1] Length = 452 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + +F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYSLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|254805021|ref|YP_003083242.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha14] gi|254668563|emb|CBA06042.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha14] Length = 410 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 27/225 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKG 196 GG DL ++ + A ED +RILR RF A YG E ++ L+ + A Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMKLMRQMVANGE 165 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L +ER+W E K L KNP I + G K + +V + Sbjct: 166 ADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNAL 210 >gi|54298734|ref|YP_125103.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Legionella pneumophila str. Paris] gi|73619788|sp|Q5X1E5|CCA_LEGPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|53752519|emb|CAH13951.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Paris] Length = 410 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T +++Y Sbjct: 5 LVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGRDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVV-FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G Y + F+ + D RRD TINA+ D+QG +ID G DL Sbjct: 60 LARTERKS--APGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSS 202 + ++ + A ED +R+LR RF F H G K + L+ K+G L L Sbjct: 118 EKLLRHVSPA---FAEDPVRVLRVARFASRFHHLGFKIANETRLLMYSMVKQGELAHLIP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E K L+ KNP I+ + + + + ++ + Sbjct: 175 ERVWQEWQKSLQEKNPEQFILSLRSCDALRVVLPEINSL 213 >gi|152992555|ref|YP_001358276.1| polynucleotide adenylyltransferase/metal-dependent phosphohydrolase [Sulfurovum sp. NBC37-1] gi|151424416|dbj|BAF71919.1| polynucleotide adenylyltransferase/metal-dependent phosphohydrolase [Sulfurovum sp. NBC37-1] Length = 485 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 12/220 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP--DRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD +M V+D DI L D + + SK V +G +K+ Sbjct: 27 LVGGAVRDMVMGQDVKDYDIEVYGLTTLDELESVLSKFG-SVSQVGKHFGIVKLRIGDVE 85 Query: 89 FDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLN 143 +D + R++ T G ++ D+K + RRDFTINA+ Y + +++D GGLN Sbjct: 86 YDFSFPRTERKTGRGHTGFEVEIDGMLDFKEAAHRRDFTINAIGYNIKTYEILDPFGGLN 145 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSS 202 D+R + ++ I D+ +ED LR+ R +F A +G ++ ++ G L+ L Sbjct: 146 DIRYKILRHIDDS--TFIEDPLRVYRAIQFAARFGFDVAENTAVLCKQMVASGVLEELPK 203 Query: 203 ERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ERI+ E K LL+A P M GI + FL++ + Sbjct: 204 ERIYEEWKKLLLKAPKPSMGFGLMREWGITEHCFLELHAL 243 >gi|73619900|sp|Q8CWL6|CCA_VIBVU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase Length = 407 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 20/217 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + V D D + ++++ K P + T +++Y Sbjct: 5 LVGGAVRDKLLGIPVYDQDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKT-----KQEY- 58 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T Y + F+ D + D LRRD TINA+ D QG + D GG DL Sbjct: 59 --ALARTERKTGQGYKGFECFFSPDVALEEDLLRRDLTINAIAMDSQGVLYDPYGGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +NR ++ + +A +ED LR+LR RF A ++ L+ SI A L L+ Sbjct: 117 QNRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E +K L P + + G + ++ Sbjct: 174 AERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEI 210 >gi|227115566|ref|ZP_03829222.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 414 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 152/355 (42%), Gaps = 51/355 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ L V + D + P+ ++ + K P + + R +Y Sbjct: 5 LVGGAVRDSLLGLPVIEKDWVVVGATPESLLAQGYQQVGKDFPV-----FLHPVSRDEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ ++G +ID G DL NR Sbjct: 60 LARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGHRDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 ++ + +A ED LR+LR RF FAH G + + + A +G L L+ ER Sbjct: 120 VLRHVSNA---FSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAYLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E K L +P + + G +F ++ D L V A + +ID+ + Sbjct: 177 VWKETEKALGTSSPDVYFQVLRDCGALAVLFPEI-----DNLYGV-PAPAKWHPEIDTGI 230 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-- 322 ++ + +MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 231 HTMMTV---------AMAARLSPEIDVRFATL----CHDLGKGLTPPELWPRHHGHGPAG 277 Query: 323 ----KVMIAKLKIF--------LALHYNNLTHQDTCF----ILQVLSDIIHWKKP 361 + + +L++ L Y++L H +L++ I W+KP Sbjct: 278 VKLVEALCQRLRVPNPIRDLAKLVAEYHDLVHTVQVLQPKTLLKLFDAIDVWRKP 332 >gi|169632938|ref|YP_001706674.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii SDF] gi|226702126|sp|B0VUU0|CCA_ACIBS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|169151730|emb|CAP00532.1| tRNA nucleotidyl transferase [Acinetobacter baumannii] Length = 412 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 125/283 (44%), Gaps = 38/283 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ S Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDYLLGHSYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ GK+ D GG NDL Sbjct: 60 LARTERKS--GQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQNDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+ ++ + +A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELDALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E ++ L + + + G K +F ++ +L + Q E + I + Sbjct: 175 ERVWKETSRALMENHADIYFQTLRDCGALKHLFPEID--ALFGVPQRPEYHPEVDCGIHT 232 Query: 263 LL--------------RFIVLISWQDKKSILSMAKKFSLPREI 291 L+ RF VL+ D L+ AK+ LPR I Sbjct: 233 LMSLQQACKSNYSLDVRFAVLV--HDLGKALTPAKE--LPRHI 271 >gi|219669447|ref|YP_002459882.1| polynucleotide adenylyltransferase region [Desulfitobacterium hafniense DCB-2] gi|219539707|gb|ACL21446.1| Polynucleotide adenylyltransferase region [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 97/400 (24%), Positives = 171/400 (42%), Gaps = 43/400 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-IPTSISYGTIKI-ICRKKY 88 +VGG VRD L+ + QD+D R ++ V + +GT ++ + Sbjct: 476 VVGGFVRDILLKVPTQDLDFVIEGDGHAFARALAQRLQDVQVVFHDQFGTARLDFADGSH 535 Query: 89 FDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 D+ ++ R D + G +V +R + D RRDFTINA+ + + G+++DY GGL Sbjct: 536 LDVASSRREDYSSPGALPQVEESR-LRDDMFRRDFTINAMAIAVNSVRYGELVDYYGGLR 594 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILS 201 DL+ I+F+ + +ED RILR RF YG + +GL ++ A L+ LS Sbjct: 595 DLKQGEIRFLHNLS--FIEDPTRILRALRFAGRYGFRLAKETREGLYTALDAGV-LQKLS 651 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----QLSQVIEAEQVFE 257 ER E +L + + G+F++ F E+ D L+Q I E+ Sbjct: 652 IERFTEEFMHMLSELKFGVMGESLLDMGVFRKWF--GAELPWDFTHPGLNQAISPER--- 706 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 ++++ + D+ + +K L RE++ FF+ +L + E Sbjct: 707 -------KWLICLRRMDRSQFERIEEKLRLARELKGIAYKFFDIMDGLLSLGVGEKGSEA 759 Query: 318 YLYG-DKVMIAKLKIFL----ALHYNNL----THQDTCFILQVLSDIIHWKKPLFPLTGD 368 Y +K+ + L +L AL L +D+ IH + G Sbjct: 760 SPYAREKISLKSLDQYLEGLPALLMEVLLWDERFRDSLEAYTEAVKAIHQT-----VDGT 814 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + ++G+ G ++G IL + W+ Q +E+ +L Sbjct: 815 ALRQWGVKEGPEIGRILKAVRLAWLEGKLQTEEEEKEFVL 854 >gi|323499426|ref|ZP_08104398.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio sinaloensis DSM 21326] gi|323315482|gb|EGA68521.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio sinaloensis DSM 21326] Length = 403 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N++V D D + P+++++ K P + T + Sbjct: 5 LVGGAVRDQLLNIAVYDKDWVVVGATPEQLVKQGFTAVGKDFPVFLHPQTKE-------- 56 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y + F D + D +RRD TINA+ D G ++D G DL Sbjct: 57 EHALARTERKTGSGYTGFECYFAADVTLEEDLMRRDLTINAMAQDDAGHIVDPYQGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG-EKNIDSDGLVASIKAKKGLKILS 201 +R ++ + DA +ED LR+LR RF A H G ++ L+ +I L+ L+ Sbjct: 117 HDRILRHVSDA---FVEDPLRVLRVARFAAKLHHLGFTVANETMELMRTIADSGELRHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E +K L ++P Sbjct: 174 AERVWQEWHKSLSTQSP 190 >gi|238750543|ref|ZP_04612043.1| Poly(A) polymerase [Yersinia rohdei ATCC 43380] gi|238711191|gb|EEQ03409.1| Poly(A) polymerase [Yersinia rohdei ATCC 43380] Length = 473 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 20/178 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 52 NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL----V 107 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 108 GRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQ 167 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 168 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAA 225 >gi|254481065|ref|ZP_05094311.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [marine gamma proteobacterium HTCC2148] gi|214038860|gb|EEB79521.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [marine gamma proteobacterium HTCC2148] Length = 413 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 12/193 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ + D + P +++ + + K P + T K C Sbjct: 10 LVGGAVRDALLGYPAYERDWVVVGATPKQMLELGYQQVGKDFPVFLHPET-KDEC---AL 65 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + + D LRRD TINA+ D +G + D GG DL +R Sbjct: 66 ARTERKSGHGYTGFAVHCDPSVTLEEDLLRRDLTINAMAQDTEGNITDPYGGQQDLADRV 125 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + DA +ED LR+LR RF A Y ++ L+ I + L L +ERI Sbjct: 126 LRHVSDA---FVEDPLRVLRTARFAARYAHLGFAVAPETLALMTEIVNQDELAHLPAERI 182 Query: 206 WSEINKLLEAKNP 218 W E+++ L +NP Sbjct: 183 WVELDRALGERNP 195 >gi|77920691|ref|YP_358506.1| poly(A) polymerase [Pelobacter carbinolicus DSM 2380] gi|77546774|gb|ABA90336.1| poly(A) polymerase [Pelobacter carbinolicus DSM 2380] Length = 442 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 35/244 (14%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K ++ L + L N G K+ +VGG VRD L+N +D D+AT P +V ++F Sbjct: 35 ISRKHINEHSLKVLYRLRNHG-FKAYLVGGGVRDLLLNRRPKDFDVATDATPSQVKKLFR 93 Query: 65 KT-----RYKVIPTSISYGTIKIICRKKYFDITTLR----SDLITDGRYAKVVFTRD--- 112 R+++ I + ++ ++ T R + + D FT + Sbjct: 94 NCFLVGRRFRL--AHIRFAENYVV------EVATFRRQPRPEELPDDPAEHFFFTENVFG 145 Query: 113 -WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDF+IN L+ + VID+VGGL DL R ++ IGD R ED +R+LR Sbjct: 146 TPREDAFRRDFSINGLFYNIDDFSVIDHVGGLQDLEARRLRVIGDPLVRFTEDPVRMLRA 205 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 F A G ++D +G+ +I + L + RI E+ +L H G Sbjct: 206 LEFAARLG-FSLD-EGIREAIYLRGPLIAEAAPARIREEVMELFR---------HAVAGP 254 Query: 230 IFKE 233 +F+E Sbjct: 255 VFRE 258 >gi|329894610|ref|ZP_08270416.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC3088] gi|328922964|gb|EGG30292.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC3088] Length = 378 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 100/219 (45%), Gaps = 24/219 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRDSL+NL V + D + P+ ++ + K P + T + Sbjct: 2 KTYLVGGAVRDSLLNLPVHERDWVVVGGSPEAMLEQGFRAVGKDFPVFLHPST-----NE 56 Query: 87 KYFDITTLRSDLITDG------RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 +Y T R G YA V + D RRD TINA+ + G +ID G Sbjct: 57 EYALARTERKQ--GQGYHGFACHYAPDVSLEE---DLARRDLTINAMAQTKDGTLIDPYG 111 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKG 196 G DL R ++ + DA ED LR+LR RF A + ++ L+ +I A Sbjct: 112 GRVDLEARVLRHVTDA---FSEDPLRVLRLARFAARFKRLGFSIAPETQRLMQTIVASGE 168 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 L L ER+W E++K L ++P I + G +++ Sbjct: 169 LTTLPHERLWQELHKALGTQHPGEFIAVLAQCGALQQLL 207 >gi|284993422|ref|YP_003411977.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geodermatophilus obscurus DSM 43160] gi|284066668|gb|ADB77606.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geodermatophilus obscurus DSM 43160] Length = 487 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 16/206 (7%) Query: 31 IVGGAVRDSLMN----------LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +VGG+VRD+L++ ++ D+D+ T P++V+ + + I++GT+ Sbjct: 35 LVGGSVRDALLSAGSAGGRGTGMAPGDLDVTTDARPEQVLDLLRGFASSTWNSGIAFGTV 94 Query: 81 KIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD--QQGKVID 137 +ITT R+D + R +V + D RRDFT+NA+ V D Sbjct: 95 GAEVDGVRLEITTFRADRYDRESRNPEVAWGDSLVDDLARRDFTVNAMAVSLGPDRTVTD 154 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKG 196 GGL DL ++ G A +D LR+LR RF A G +D +VA++ + Sbjct: 155 PYGGLGDLLAGRLRTPGAAEDSFADDPLRMLRAVRFVAQLGLTPVDE--VVAAMTSLAPE 212 Query: 197 LKILSSERIWSEINKLLEAKNPLNAI 222 L ++ ER+ E++K L +P A+ Sbjct: 213 LGRITPERVQVELSKTLLQHSPRAAL 238 >gi|119871509|ref|YP_941461.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] gi|119697598|gb|ABL94671.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] Length = 489 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 6/218 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+++ + T I +GT+ + + Sbjct: 45 LVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTGIEFGTVGVGKAGHRME 104 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R V + + D +RRDFT+NA+ A G+ D +GGL L Sbjct: 105 ITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITAAGPGEFHDPLGGLAAL 164 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R + + +D LR+LR RF + G + A + L ++ ER+ Sbjct: 165 RAKVLDTPSAPEVSFGDDPLRMLRAARFASQLG-FGVAPRVRTAMTEMAPQLSRITVERV 223 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +E++KLL +P+ I M G+ + +V + L Sbjct: 224 AAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRL 261 >gi|317475446|ref|ZP_07934710.1| poly A polymerase head domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908474|gb|EFV30164.1| poly A polymerase head domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 474 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + +K + S+ ++GT ++ Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRLGRGAHLSVFKNFGTAQLKYHGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + T VV + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYTHDSRKPVVEDGSLEDDQNRRDFTINALAVCLNRQRYGELVDPFGGMED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 +R +TI+ D +D LR++R RF ID D + + K+ + I+S ER Sbjct: 154 MREKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNKERISIISKER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L + P ++ + G+ + IF ++ Sbjct: 213 IADELNKILLSPVPSKGLIDLDRSGLLQLIFPEL 246 >gi|283852932|ref|ZP_06370192.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp. FW1012B] gi|283571690|gb|EFC19690.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp. FW1012B] Length = 947 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 107/435 (24%), Positives = 175/435 (40%), Gaps = 57/435 (13%) Query: 17 NILSLLNKGED-------KSCIVGGAVRDSLMNLSVQDIDIATT---ILPDRVMRIFSKT 66 +IL LL K D +VGG VRD L+ D+D+ I M Sbjct: 472 DILELLKKAGDLGREMGFAVYVVGGFVRDLLLKHPNYDVDLVVEGDGIAFAAAMAKAYGG 531 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 RYK P + + I+ D+ T R + V K D RRDFT+NA Sbjct: 532 RYKAHPKFKT--AVIILPGDARVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNA 589 Query: 127 LY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEK 180 L D+ G+++D+ G D++ R ++ + H + +ED RI+R RF +G + Sbjct: 590 LAVHLLPDRFGELVDFFGAQRDIKERVLRVL----HSLSFVEDPTRIVRAIRFSERFGFR 645 Query: 181 -NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D L+ + LS R++ E+ +LE KNPL + M + + + Sbjct: 646 IGGQTDRLIKNAVRHNFFHRLSGARVFHELRLILEEKNPLACLRRMQEYKLLAAVH-PLL 704 Query: 240 EISLDQLSQVIEAEQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKKF----- 285 ++ + + ++E E V W + L+ F+ L S D + +AK+ Sbjct: 705 ALTPARETVLMEVENVINWYRLLYIEPAPQNWLVYFLALCSGMDAEQFTVIAKRLNFSKR 764 Query: 286 ------SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 SL +IR FN +++ LS + F L G + A L L N Sbjct: 765 TAGEIASLRVQIRETAQGLFNWEYHKGPLS----ELYFLLEGLPIEGA-----LFLMARN 815 Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399 ++ Q L+ + + +TG+D+ K G+ PG + IL I+ Sbjct: 816 PREPLQKYVSQHLTSL---RGKRVEVTGNDLKKLGVEPGPQYTGILRRILGAVIDGHAPC 872 Query: 400 SQEDLHHLLRKLIAS 414 E L + R+L A Sbjct: 873 RSEQL-EMARRLAAG 886 >gi|330963838|gb|EGH64098.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 409 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ + LK L++E Sbjct: 119 RVLRHVSPA---FAEDPLRVLRVARFAARYASHGFTIAPETLELMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L P I +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEDQPQVFIQALHDCGALSELMPEVEAL 213 >gi|326423741|ref|NP_759609.3| tRNA nucleotidyltransferase [Vibrio vulnificus CMCP6] gi|27360199|gb|AAO09136.1| tRNA nucleotidyltransferase [Vibrio vulnificus CMCP6] Length = 436 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 20/217 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + V D D + ++++ K P + T +++Y Sbjct: 34 LVGGAVRDKLLGIPVYDQDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKT-----KQEY- 87 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T Y + F+ D + D LRRD TINA+ D QG + D GG DL Sbjct: 88 --ALARTERKTGQGYKGFECFFSPDVALEEDLLRRDLTINAIAMDSQGVLYDPYGGQQDL 145 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +NR ++ + +A +ED LR+LR RF A ++ L+ SI A L L+ Sbjct: 146 QNRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELSALT 202 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E +K L P + + G + ++ Sbjct: 203 AERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEI 239 >gi|145642144|ref|ZP_01797713.1| polyA polymerase [Haemophilus influenzae R3021] gi|145273135|gb|EDK13012.1| polyA polymerase [Haemophilus influenzae 22.4-21] Length = 509 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 92 NALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 148 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 149 GRRFRLAHIMFGRDIIEVATFRANHNDARNENQAKQSNEGMLLRDNVYGTI------EQD 202 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 203 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 262 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + G+F+ Sbjct: 263 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFE 318 Query: 233 EIF 235 ++F Sbjct: 319 QLF 321 >gi|126438336|ref|YP_001074027.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] gi|126238136|gb|ABO01537.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] Length = 489 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 6/218 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T P+++ + T I +GT+ + + Sbjct: 45 LVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTGIEFGTVGVGKAGHRME 104 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R V + + D +RRDFT+NA+ A G+ D +GGL L Sbjct: 105 ITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITAAGPGEFHDPLGGLAAL 164 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R + + +D LR+LR RF + G + A + L ++ ER+ Sbjct: 165 RAKVLDTPSAPEVSFGDDPLRMLRAARFASQLG-FGVAPRVRTAMTEMAPQLARITVERV 223 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +E++KLL +P+ I M G+ + +V + L Sbjct: 224 AAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRL 261 >gi|269101800|ref|ZP_06154497.1| poly(A) polymerase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161698|gb|EEZ40194.1| poly(A) polymerase [Photobacterium damselae subsp. damselae CIP 102761] Length = 430 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 34/243 (13%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIP 72 +L LNK + +VGG VRD L+N +D DIAT P+ + +F R +++ Sbjct: 1 MLYRLNKAGFDAYLVGGGVRDLLLNKQPKDFDIATNATPEEIKALFRNCRLVGRRFRLAH 60 Query: 73 TSISYGTIKIIC-RKKYFDITTLRSD----------------LITDGRYAKVVFTRDWKA 115 I++ R + D L + L+ D Y + Sbjct: 61 ILFGRDIIEVATFRGHHSDPQPLPKEKEAKQKQTSAQNQSGMLLRDNVYGTI------DE 114 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTINALY + V DY G+ DL + I+ IGD R ED +R+LR RF Sbjct: 115 DAERRDFTINALYYSVKDFTVTDYAHGVEDLDDGIIRLIGDPETRYREDPVRMLRAVRFA 174 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA--IVHMYNGGIFK 232 A + NI+ + + L+ + + R++ E KLL++ L ++ YN +F+ Sbjct: 175 AKL-DMNIERNTEAPIKQLAHLLQDIPAARLFEESLKLLQSGQGLATYHLLRQYN--LFE 231 Query: 233 EIF 235 ++F Sbjct: 232 QLF 234 >gi|119773915|ref|YP_926655.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Shewanella amazonensis SB2B] gi|119766415|gb|ABL98985.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Shewanella amazonensis SB2B] Length = 424 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 17/230 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R + Sbjct: 1 MLYRLNKAGYEAFLVGGGVRDLLLGLEPKDFDVVTNATPEDIKKLFRNCRL----VGRRF 56 Query: 78 GTIKIICRKKYFDITTLR-----------SDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 I+ + ++ T R S +GR + D+ RRDFT+NA Sbjct: 57 RLAHIVFGRDVIEVATFRGHHGNEDGDKISKANAEGRLLRDNVYGSIDEDAERRDFTVNA 116 Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D + Y GG+ DL + ++ IGD R ED +R++R RF G + I+ Sbjct: 117 LYYDISDYSIRSYGGGMEDLNDGVLRLIGDPETRYREDPVRMIRAVRFATKLGMR-IEEV 175 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K L+ + + R++ E+ KL A M +F IF Sbjct: 176 TAAPIRKLAPLLRDIPAARMYEEVLKLFFAGKGQANYQMMQEYQLFAPIF 225 >gi|218128766|ref|ZP_03457570.1| hypothetical protein BACEGG_00338 [Bacteroides eggerthii DSM 20697] gi|217988994|gb|EEC55310.1| hypothetical protein BACEGG_00338 [Bacteroides eggerthii DSM 20697] Length = 474 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 11/232 (4%) Query: 17 NILSLLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 NI +++ D+ C +VGG VRD + +DID+ + +K + Sbjct: 16 NIFGRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRLGRGAH 75 Query: 73 TSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA- 129 S+ ++GT ++ + R + T VV + D RRDFTINAL Sbjct: 76 LSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPVVEDGSLEDDQNRRDFTINALAVC 135 Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + G+++D GG+ D+R +TI+ D +D LR++R RF ID D Sbjct: 136 LNRQRYGELVDPFGGMEDMREKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDT 194 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + + K+ + I+S ERI E+NK+L + P ++ + G+ + IF ++ Sbjct: 195 FESLCRNKERISIISRERIADELNKILLSPVPSKGLIDLDRSGLLQLIFPEL 246 >gi|329298667|ref|ZP_08256003.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Plautia stali symbiont] Length = 410 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 20/200 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+ L V+D D + PD ++ + + P + + R+ Sbjct: 2 KTFLVGGAVRDALLRLPVKDRDWVVVGATPDSMLAQGYQQVGRDFPVFLHPES-----RE 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 +Y R++ + Y V F D + D RRD TINA+ G +ID G Sbjct: 57 EY---ALARTERKSGNGYTGFVTQFAPDVTLEQDLQRRDLTINAIAQAADGTLIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+ RT++ + A + ED LR+LR RF A + N ++ L+ + L Sbjct: 114 QDLQQRTLRHVSAAFN---EDPLRVLRVARFAARFAHLNFRVAPETQALMREMAHSGELA 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L++ER+W E K L +NP Sbjct: 171 HLTAERVWKETEKALLTRNP 190 >gi|212711175|ref|ZP_03319303.1| hypothetical protein PROVALCAL_02247 [Providencia alcalifaciens DSM 30120] gi|212686343|gb|EEB45871.1| hypothetical protein PROVALCAL_02247 [Providencia alcalifaciens DSM 30120] Length = 413 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 18/199 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L + D D + P+ ++ + K P + T + Sbjct: 2 KVYLVGGAVRDKLLGLPISDRDYVVVGTTPEAMLAKGFQQVGKDFPVFLHPKT-----HE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R I G ++ + D LRRD TINA+ G++ID G+ Sbjct: 57 EYALARTERK--IGSGYTGFSCYSAPDVTIEDDLLRRDLTINAIAQSDTGELIDPHHGVR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL+NR ++ + DA LED LR+LR RF A Y + ++ L+ S+ L Sbjct: 115 DLKNRVLRHVSDA---FLEDPLRVLRVARFAARYYAQGFRIAPETMFLMQSMSESGELSH 171 Query: 200 LSSERIWSEINKLLEAKNP 218 L+ ER+W+E +K L + +P Sbjct: 172 LTPERVWTETHKALMSNSP 190 >gi|74318378|ref|YP_316118.1| metal dependent phosphohydrolase [Thiobacillus denitrificans ATCC 25259] gi|74057873|gb|AAZ98313.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Thiobacillus denitrificans ATCC 25259] Length = 542 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 17/262 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V D D + PD ++ + K P + T + Sbjct: 2 KTYVVGGAVRDRLLGLQVSDRDHVVVGATPDEMLAAGFRPVGKDFPVFLHPHTHEEYALA 61 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + T +S G + D RRD TINA+ D+ G +ID G DL Sbjct: 62 R----TERKSGRGYKGFVVHAAPEVTLEEDLARRDLTINAIAEDESGTLIDPYDGQADLA 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILSSER 204 +T + + +A ED +RILR RF A + E + +++ L+ + + L +ER Sbjct: 118 AKTFRHVSEA---FAEDPVRILRVARFAARFTEFTVAPETNALMRRMVDSGEVDALVAER 174 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W EI + L P + + G + +V D+L V + + ++D+ + Sbjct: 175 VWQEIARGLMETQPSRMFAVLRDCGALARMLPEV-----DRLFGVPQPPE-HHPEVDTGI 228 Query: 265 RFIVLISWQDKKSILSMAKKFS 286 +++I W ++ ++A +F+ Sbjct: 229 HVMLVIDWAARQGA-NLAVRFA 249 >gi|120406990|ref|YP_956819.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] gi|119959808|gb|ABM16813.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] Length = 483 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 106/225 (47%), Gaps = 20/225 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ D+D T PD+++ + T I +GT+ + + Sbjct: 41 LVGGSVRDALLGRLGTDLDFTTDARPDQMLPFLRGWGDALWDTGIDFGTLGVAKGGDRLE 100 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R+ +V + + D +RRDFT+NA+ + +D + GL L Sbjct: 101 ITTFRADSYDQVSRHPEVRYGDNLADDLVRRDFTVNAMAVRITPGGPTEFLDPLDGLAAL 160 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS---- 201 R++ + + +D LR+LR RF + G + + ++ L+ ++ Sbjct: 161 RDQVLDTPSEPEVSFSDDPLRMLRAARFVSQL--------GFAVAPRVRRALQEMAPQLS 212 Query: 202 ---SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +ER+ +E++KLL +P+ + M G+ + ++ + + Sbjct: 213 RITAERVAAELDKLLLGADPVAGLNLMVETGLGDVVLPEIGAMRM 257 >gi|37527827|ref|NP_931172.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Photorhabdus luminescens subsp. laumondii TTO1] gi|73619817|sp|Q7MAZ9|CCA_PHOLL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|36787263|emb|CAE16344.1| tRNA nucleotidyltransferase (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 416 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 155/354 (43%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N V++ D + + ++ + + K P + T + + Sbjct: 5 LVGGAVRDRLLNFPVKERDWVVVGGTSEALLSLGYQQVGKDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S L G + D RRD T+NA+ G+++D G++DL NR Sbjct: 63 --TERKSGLGYTGFTCYAAPDVTLEDDLQRRDLTVNAIAQTPTGELVDPYHGVDDLNNRI 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSSERI 205 ++ + DA ED LR+LR RF FAH G ++ L++++ L +L+ ER+ Sbjct: 121 LRHVSDA---FSEDPLRVLRVARFAARFAHLGFTIASETQALMSNMAINGELSVLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E K L + +P + + G +F ++ D L V E+ + +ID+ + Sbjct: 178 WKETEKALASPSPQVFFQVLRDCGALAVLFPEI-----DNLFGVPAPEK-WHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK-- 323 ++ +L +A + + + R+ + C+ K L+ PE Y +G Sbjct: 232 TLM---------VLKVATELTDEVDSRFAAL----CHDLGKGLTPPEQWPHHYGHGPAGV 278 Query: 324 ----VMIAKLKIF--------LALHYNNLTHQDTCF----ILQVLSDIIHWKKP 361 + +L++ LA Y++L H T +L++ + W+KP Sbjct: 279 KLVDQLCQRLRVPNSARDLAKLAAQYHDLVHTVTQLRPKTLLKLFDAVDAWRKP 332 >gi|163859075|ref|YP_001633373.1| tRNA CCA-pyrophosphorylase [Bordetella petrii DSM 12804] gi|163262803|emb|CAP45106.1| tRNA nucleotidyltransferase [Bordetella petrii] Length = 368 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 24/223 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD+L+ D D + P+ R IP G + + Sbjct: 21 IVGGAVRDALLGQPAGDRDWVVVGATPE------DMARRGFIPVG---GDFPVFLHPRTK 71 Query: 90 DITTLRSDLITDGR-------YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + L GR Y T + D LRRD T+NA+ QG+++D + G Sbjct: 72 EEYALARTERKSGRGYKGFTFYTGADVT--LEQDLLRRDLTVNAIARTPQGQLLDPLNGA 129 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--L 200 D+R R ++ +G+A ED +RILR RF A +G+ + D L + + ++ L Sbjct: 130 ADVRARVLRHVGEA---FAEDPVRILRLGRFAARFGDFTVAPDTLALCRRMVENGEVDAL 186 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ER+W E+++ L A P + + G + +Q+I + Sbjct: 187 VPERVWKELSRGLMAATPSRMLDVLAQSGALARVMPQLQDIDI 229 >gi|157148617|ref|YP_001455936.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Citrobacter koseri ATCC BAA-895] gi|166233851|sp|A8APT7|CCA_CITK8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157085822|gb|ABV15500.1| hypothetical protein CKO_04444 [Citrobacter koseri ATCC BAA-895] Length = 413 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T R++Y Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQT-----REEYA 59 Query: 90 DITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R S YA T + D RRD TINAL D G ++D G DL Sbjct: 60 LARTERKSGSGYTGFTCYAAPDVT--LEEDLQRRDLTINALAQDDDGHIVDPYQGRRDLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 NR ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ Sbjct: 118 NRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETLALMRDMTAAGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E L +NP + + G + +F +V Sbjct: 175 ERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEV 210 >gi|312968601|ref|ZP_07782810.1| poly A polymerase head domain protein [Escherichia coli 2362-75] gi|312286819|gb|EFR14730.1| poly A polymerase head domain protein [Escherichia coli 2362-75] Length = 412 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 86/354 (24%), Positives = 150/354 (42%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETENALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPARWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSM S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMVAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRMPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|330878403|gb|EGH12552.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 409 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ + LK L++E Sbjct: 119 RVLRHVSPA---FAEDPLRVLRVARFAARYASHGFTIAPETLELMRKLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L + P I +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEEQPQVFIQVLHDCGALSELMPEVEAL 213 >gi|307132158|ref|YP_003884174.1| poly(A) polymerase I [Dickeya dadantii 3937] gi|306529687|gb|ADM99617.1| poly(A) polymerase I [Dickeya dadantii 3937] Length = 467 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 16/216 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+K ++ +VGG VRD L+ +D DI T P++V ++F R Sbjct: 46 ENALKVLYRLSKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRLVGRR 105 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 +++ I++ + + + + + + RD + D+ RRDF Sbjct: 106 FRLAHVMFGPEVIEVATFRGHHEQHQEQETKNAAQQGHNGMLLRDNIFGTIEEDAQRRDF 165 Query: 123 TINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 +IN+LY AD V DY GLNDLR I+ IG+ R ED +R+LR RF A G Sbjct: 166 SINSLYYSIAD--FTVRDYTNGLNDLRQGLIRLIGEPETRYREDPVRMLRAVRFAAKLGM 223 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 + I + + L + R++ E KLL+A Sbjct: 224 R-ISPETAEPIPRLASLLHDIPPARLFEESLKLLQA 258 >gi|293602450|ref|ZP_06684896.1| CCA-adding enzyme [Achromobacter piechaudii ATCC 43553] gi|292819212|gb|EFF78247.1| CCA-adding enzyme [Achromobacter piechaudii ATCC 43553] Length = 369 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 120/274 (43%), Gaps = 38/274 (13%) Query: 31 IVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 IVGGAVRD+L+ L D D + D V R F IP G + + Sbjct: 14 IVGGAVRDALLGLPPGDHDWVVVGATPEDMVRRGF-------IPVG---GDFPVFLHPRT 63 Query: 89 FDITTLRSDLITDGRY---------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 + L GR A V D + RRD T+NA+ Q G+++D + Sbjct: 64 KEEYALARTERKSGRGYKGFTFYTGADVTLEEDLR----RRDLTVNAIAQTQDGQLVDPL 119 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV---ASIKAKKG 196 G+ DLR R + +G+A ED +RILR RF A + + ++ + L A + A + Sbjct: 120 NGVADLRARVFRHVGEAFQ---EDPVRILRLGRFAARFDDFSVAPETLALCRAMVDAGEA 176 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L +ER+W E+++ L AK P + ++ G + ++Q +D +S ++ Sbjct: 177 -DALVAERVWKELSRGLMAKKPSRMLEVLHTCGALARVMPELQ--GVDTVSADVDRAAAQ 233 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 + + R+ +L ++ L ++ +P E Sbjct: 234 DLSMPG--RYALLCRLTPEREALG--RRMRVPTE 263 >gi|269961935|ref|ZP_06176290.1| Poly(A) polymerase [Vibrio harveyi 1DA3] gi|269833258|gb|EEZ87362.1| Poly(A) polymerase [Vibrio harveyi 1DA3] Length = 455 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 29/243 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R Sbjct: 41 LKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRL----IGR 96 Query: 76 SYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKADSL 118 + I+ + ++ T R L+ D Y + D+ Sbjct: 97 RFRLAHIMFGRDIIEVATFRGHHQEQKNKNVSQQSKEGMLLRDNVYGTI------DEDAE 150 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN++Y + I DY G+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RRDFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL 210 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + +I+ D + L+ + S R++ E K+L++ + L + +F+++F Sbjct: 211 -DFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNLFQQLFPV 269 Query: 238 VQE 240 + E Sbjct: 270 IAE 272 >gi|312170980|emb|CBX79239.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora ATCC BAA-2158] Length = 408 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 157/360 (43%), Gaps = 55/360 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L++L ++D D + P +++++ + + P + + + Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPRQMLQLGYQQIGRDFPVFLHPDS-----HE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R G V ++ + D RRD TINA+ D G D GG + Sbjct: 57 EYALARTERKS--GQGYTGFVCYSAPDVTLEQDLARRDLTINAIARDTDGNYYDPYGGRS 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL+ R ++ + A + ED LR+LR RF A + + N ++ L+ ++ L+ Sbjct: 115 DLQQRLLRHVSAAFN---EDPLRVLRVARFAARFADLNFRIADETLALMQTMTDSGELQH 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L++ER+W E L+ NP + + G +F + LD+L V A + + Sbjct: 172 LTAERVWKETESALQTPNPQVFFQVLRDCGALAVLFPE-----LDKLYGV-PAPAKWHPE 225 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 ID+ + ++ L+M+ + S EIR+ + F + K L+ PE + Sbjct: 226 IDTGVHTLM---------TLAMSARLSPEIEIRFAAL-FHDVG---KALTPPEKWPSHHG 272 Query: 320 YGD------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKKP 361 +G + +L++ AL + + HQ ++ + + W+KP Sbjct: 273 HGPAGVPLVAALCERLRVPNALRDLALLVTEFHDLVHTIQHQPPVQLVALFDRVDAWRKP 332 >gi|320157465|ref|YP_004189844.1| tRNA nucleotidyltransferase [Vibrio vulnificus MO6-24/O] gi|319932777|gb|ADV87641.1| tRNA nucleotidyltransferase [Vibrio vulnificus MO6-24/O] Length = 407 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 102/217 (47%), Gaps = 20/217 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + V D D + ++++ K P + T +++Y Sbjct: 5 LVGGAVRDKLLGIPVYDHDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKT-----KQEY- 58 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T Y + F+ D + D LRRD TINA+ D QG + D GG DL Sbjct: 59 --ALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGALYDPYGGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILS 201 ++R ++ + +A +ED LR+LR RF A G + D L+ SI A L L+ Sbjct: 117 QDRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETLQLMQSIAASGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E +K L P + + G + ++ Sbjct: 174 AERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEI 210 >gi|326383888|ref|ZP_08205572.1| tRNA adenylyltransferase [Gordonia neofelifaecis NRRL B-59395] gi|326197347|gb|EGD54537.1| tRNA adenylyltransferase [Gordonia neofelifaecis NRRL B-59395] Length = 484 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 8/219 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D+ T P + I V T I +GT+ + Sbjct: 44 LVGGSVRDAVLGRLAGDLDLTTDARPAVIAEILRSWGDAVWDTGIDFGTVSAAKAGATVE 103 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 ITT RSD+ R V F D +RRDF INA L + D + G+ DL Sbjct: 104 ITTFRSDIYDQQSRNPVVTFGDTLDGDLIRRDFRINAMAVRLLPGGGQEFCDPLDGMTDL 163 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 I +D LR+LR RF + G + SD ++ + ++ G ++ +++ER Sbjct: 164 LAGIIDTPAAPESSFNDDPLRMLRGVRFVSQLGFRM--SDRVLEATRSMAGQIERITAER 221 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 I E++K + ++PL A+ + G+ + I ++ + L Sbjct: 222 IRVELDKTICGEHPLEAVDLLVETGLAELIIPEIPGMKL 260 >gi|170723965|ref|YP_001751653.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas putida W619] gi|226702076|sp|B1JDY1|CCA_PSEPW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|169761968|gb|ACA75284.1| Polynucleotide adenylyltransferase region [Pseudomonas putida W619] Length = 370 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 22/281 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID ++ V + +K P + + K + Sbjct: 6 VGGAVRDRLLGRPVSDIDW--LVVGASVEEMHAKG---FRPVGADFPVF--LHPKTGEEY 58 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 R++ + Y F + D +RRD TINA+ D QG V+D G DL Sbjct: 59 ALARTERKSGRGYGGFTFHASPEVTLEEDLIRRDLTINAMAEDDQGNVLDPFHGRADLEQ 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ I A L+ L++E Sbjct: 119 RLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLELMKQIAASGELQALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R W EI + L P I + + K++ +++ + + AE I Sbjct: 176 RSWKEIERALMEDEPQVFINVLSDCAALKQLMPELEGDAAALAALTQAAEHHQPLHI--- 232 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 R+ L+ SI ++ ++F PRE + + C N Sbjct: 233 -RWACLLHNLKPASIKALNQRFKAPRECQELAMLVGECASN 272 >gi|89895037|ref|YP_518524.1| hypothetical protein DSY2291 [Desulfitobacterium hafniense Y51] gi|89334485|dbj|BAE84080.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 97/400 (24%), Positives = 170/400 (42%), Gaps = 43/400 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-IPTSISYGTIKI-ICRKKY 88 +VGG VRD L+ + QD+D R ++ V + +GT ++ + Sbjct: 476 VVGGFVRDILLKVPTQDLDFVIEGDGHAFARALAQRLQDVQVVFHDQFGTARLDFADGSH 535 Query: 89 FDI-TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 D+ ++ R D + G +V +R + D RRDFTINA+ + + G+++DY GGL Sbjct: 536 LDVASSRREDYSSPGALPQVEESR-LRDDMFRRDFTINAMAIAVNSVRYGELVDYYGGLR 594 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILS 201 DL+ I+F+ + +ED RILR RF YG + +GL ++ A L+ LS Sbjct: 595 DLKQGEIRFLHNLS--FIEDPTRILRALRFAGRYGFRLAKETREGLYTALDAGV-LQKLS 651 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----QLSQVIEAEQVFE 257 ER E +L + + G+F + F E+ D L+Q I E+ Sbjct: 652 IERFTEEFMHMLSELKFGVMGESLLDMGVFPKWF--GAELPWDFTHPGLNQAISPER--- 706 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 ++++ + D+ + +K L RE++ FF+ +L + E Sbjct: 707 -------KWLICLRRMDRSQFERIEEKLRLARELKGIAYKFFDIMDGLLSLGVGEKGSEA 759 Query: 318 YLYG-DKVMIAKLKIFL----ALHYNNL----THQDTCFILQVLSDIIHWKKPLFPLTGD 368 Y +K+ + L +L AL L +D+ IH + G Sbjct: 760 SPYAREKISLKSLDQYLEGLPALLMEVLLWDERFRDSLEAYTEAVKAIHQT-----VDGT 814 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + ++G+ G ++G IL + W+ Q +E+ +L Sbjct: 815 ALRQWGVKEGPEIGRILKAVRLAWLEGKLQTEEEEKEFVL 854 >gi|68248614|ref|YP_247726.1| poly polymerase [Haemophilus influenzae 86-028NP] gi|68056813|gb|AAX87066.1| probable poly polymerase [Haemophilus influenzae 86-028NP] Length = 452 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 34/243 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 35 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 91 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 92 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 145 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 146 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 205 Query: 176 H---YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + EK S+ + + LK + R++ E KLL+A + + +F+ Sbjct: 206 KLDMFLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGQGVKTYRLLRQYSLFE 261 Query: 233 EIF 235 ++F Sbjct: 262 QLF 264 >gi|238786773|ref|ZP_04630574.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641] gi|238725141|gb|EEQ16780.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641] Length = 521 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 99 NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL----V 154 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 155 GRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQ 214 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 215 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL 274 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I ++ + L + R++ E KLL++ + + +F+ +F Sbjct: 275 -DMSISAETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 331 >gi|269797051|ref|YP_003316506.1| tRNA adenylyltransferase [Sanguibacter keddieii DSM 10542] gi|269099236|gb|ACZ23672.1| tRNA adenylyltransferase [Sanguibacter keddieii DSM 10542] Length = 488 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 116/268 (43%), Gaps = 28/268 (10%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI--KIICRKK 87 +VGG VRD+ + S D+D AT+ PD +R+ + +GTI K R Sbjct: 38 ALVGGPVRDAFLGRSSADLDFATSARPDETLRLLAAWGDAHWDIGKEFGTIGAKRFARGG 97 Query: 88 Y----FDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141 ++TT R+D R VVF D RRDFT+NA+ +D G Sbjct: 98 APEVVVEVTTYRTDEYDPASRKPLVVFGDTLDGDLSRRDFTVNAMAVRLPDLTFVDPHDG 157 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL ++ +A +D LR++R RF A G ++D + A + I+S Sbjct: 158 LTDLAREVLRTPIEAARSFDDDPLRMMRAARFAAQLG-FDVDPEADRAVRDMADRISIVS 216 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------------DVQEISLDQ 245 +ER+ E++KLL +++P + + G+ + DV E SL Sbjct: 217 AERVRDELSKLLVSQHPRKGLHVLVETGLADHVLPELVGMKQAVDEHNRHKDVYEHSLTV 276 Query: 246 LSQVIEAEQVFEWKI---DSLLRFIVLI 270 L Q I+ E + + D +LR L+ Sbjct: 277 LDQAIDLETDADGAVPGPDFVLRLAALL 304 >gi|260775197|ref|ZP_05884095.1| tRNA nucleotidyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260608898|gb|EEX35060.1| tRNA nucleotidyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 405 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 109/233 (46%), Gaps = 25/233 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + V D D + P ++ K P + T + Sbjct: 5 LVGGAVRDKLLKIDVYDQDWVVVGASPQVLLDQGFVAVGKDFPVFLHPKTKQ-------- 56 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y F D + D +RRD TINA+ D+QG++ID GG DL Sbjct: 57 EHALARTERKTGSGYKGFDCYFAPDVTLEEDLIRRDLTINAMAEDEQGRIIDPYGGQKDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG-EKNIDSDGLVASIKAKKGLKILS 201 +R ++ + DA ED LR+LR RF A H G ++ L+A I L L+ Sbjct: 117 NDRVLRHVSDA---FTEDPLRVLRVARFAAKLHHLGFTIAPETQQLMAQIVQSGELIHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 +ER+W E +K L ++P + + + G K I + LD+L V + E+ Sbjct: 174 AERVWQEWHKSLSTQDPQIFLSVLRDCGALKVILPE-----LDRLFGVPQPEK 221 >gi|160882737|ref|ZP_02063740.1| hypothetical protein BACOVA_00695 [Bacteroides ovatus ATCC 8483] gi|299148031|ref|ZP_07041094.1| polyA polymerase family protein [Bacteroides sp. 3_1_23] gi|156111907|gb|EDO13652.1| hypothetical protein BACOVA_00695 [Bacteroides ovatus ATCC 8483] gi|298514214|gb|EFI38100.1| polyA polymerase family protein [Bacteroides sp. 3_1_23] Length = 477 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ R Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKQLGRGAHVSVFKNFGTAQVKYRGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GGL D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFGGLED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF G ID D + + K+ ++I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLG-FYIDDDTFESLCRNKERIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK++ + P + + G+ IF Sbjct: 213 IADELNKIILSPIPSKGFIDLERSGLLPLIF 243 >gi|109899587|ref|YP_662842.1| metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c] gi|122971671|sp|Q15QQ0|CCA_PSEA6 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|109701868|gb|ABG41788.1| metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c] Length = 405 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 93/200 (46%), Gaps = 26/200 (13%) Query: 31 IVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ V+D D + D + + F + K P + T +++Y Sbjct: 5 LVGGAVRDKLLERPVKDKDWVVVGASEADMLAKGFQQVG-KDFPVFLHPKT-----QQEY 58 Query: 89 FDITTLRSDLITDGRYAKVVFTRD------WKADSLRRDFTINALYADQQGKVIDYVGGL 142 T R I G YA F D + D LRRD T+NA+ D G +ID G Sbjct: 59 ALARTERK--IGQG-YAG--FECDTSTNVTLEQDLLRRDLTVNAMAMDDNGNIIDPFNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DLRNR ++ + DA ED LR+LR RF A Y ++ L+A+I L Sbjct: 114 KDLRNRVLRHVSDAFE---EDPLRVLRVARFAARYASYGFSIADETKTLMANITQSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 LS+ER+W E K L P Sbjct: 171 HLSAERVWVETAKSLLEDTP 190 >gi|253689770|ref|YP_003018960.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259585846|sp|C6DDL7|CCA_PECCP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|251756348|gb|ACT14424.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 414 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 51/355 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ L V + D + P+ ++ + K P + + +Y Sbjct: 5 LVGGAVRDSLLGLPVTEKDWVVVGATPEDLLAQGYQQVGKDFPV-----FLHPVSHDEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ +QG +ID G DL N Sbjct: 60 LARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTEQGDLIDPYHGRRDLENH 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 ++ + DA ED LR+LR RF FAH G + + + A +G L L+ ER Sbjct: 120 VLRHVSDA---FSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAYLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E K L +P + + G +F ++ D L V A + +ID+ + Sbjct: 177 VWKETEKALGTSSPDVYFQVLRDCGALAVLFPEI-----DNLYGV-PAPAKWHPEIDTGI 230 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-- 322 ++ + +MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 231 HTMMTV---------AMAARLSPEIDVRFATL----CHDLGKGLTPPELWPRHHGHGPAG 277 Query: 323 ----KVMIAKLKIF--------LALHYNNLTHQDTCF----ILQVLSDIIHWKKP 361 + + +L++ L Y++L H +L++ I W+KP Sbjct: 278 VKLVEALCQRLRVPNPIRDLAKLVAEYHDLIHTVQVLQPKTLLKLFDAIDVWRKP 332 >gi|332305449|ref|YP_004433300.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172778|gb|AEE22032.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 405 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ V+D D + D + + + + K P + T + Sbjct: 5 LVGGAVRDKLLGRPVKDQDWVVVGASEADMLAQGYQQVG-KDFPVFLHPKTQQ------- 56 Query: 89 FDITTLRSDLITDGRYA----KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ T YA + + D LRRD T+NA+ D +G +ID G D Sbjct: 57 -EYALARTERKTGQGYAGFECDTSTSVTLEQDLLRRDLTVNAMAMDDKGAIIDPFNGQQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + DA ED LR+LR RF A Y ++ L+A+I L L Sbjct: 116 LKNRVLRHVSDAFE---EDPLRVLRVARFAARYASYGFTIADETKALMANITRSGELSHL 172 Query: 201 SSERIWSEINKLLEAKNP 218 S+ER+W E K L P Sbjct: 173 SAERVWVETAKSLLEDTP 190 >gi|226289247|gb|EEH44759.1| tRNA nucleotidyltransferase [Paracoccidioides brasiliensis Pb18] Length = 646 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 43/247 (17%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPD-----------------RVMRIFSKTRYKVIPTS 74 GG VRD L+ + DID+A + R +IF + V+ Sbjct: 158 AGGWVRDKLLGVESHDIDVAINSMTGEKFGEGLKEYLSIPGNLRKYKIFHPSNPSVVDFI 217 Query: 75 ISYGTIKIICRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + K R K+ + T LR + TD V + DSLRRD Sbjct: 218 KLHKIEKNPERSKHLETATTRMFGLDIDFVNLRKETYTDESRNPQVEVGTPEEDSLRRDA 277 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-- 178 T+NAL+ + ++I D+ G GL D++N+ I+ + +D LR+LR RF + G Sbjct: 278 TVNALFYNIHTELIEDFTGQGLQDMKNKIIRTPMEPFQTFKDDPLRVLRLIRFASRLGYT 337 Query: 179 -----EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 E+ + D + +++KAK +S ERI EI K L +PL A+ + G++ Sbjct: 338 IDCDTEEAMKIDAIKSALKAK-----ISQERIGVEIEKTLRGPDPLTALQRINRLGLYDT 392 Query: 234 IFLDVQE 240 I + Q+ Sbjct: 393 ILANHQD 399 >gi|15836832|ref|NP_297520.1| polynucleotide adenyltransferase [Xylella fastidiosa 9a5c] gi|9105036|gb|AAF83040.1|AE003876_5 polynucleotide adenyltransferase [Xylella fastidiosa 9a5c] Length = 421 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 28/239 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F R Sbjct: 19 PNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLFRSCRL---- 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADSL 118 + ++ ++ ++ T R++ L+ D Y + + D+ Sbjct: 75 IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTI------EDDAT 128 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT NALY + V DYVGG D+++R ++ IGD R ED +R+LR R Sbjct: 129 RRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLAVKL 188 Query: 178 GEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G + I++ G I G L ++ R++ E+ KL + + + + + + G+ +F Sbjct: 189 GFE-IEA-GTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVLF 245 >gi|119356930|ref|YP_911574.1| metal dependent phosphohydrolase [Chlorobium phaeobacteroides DSM 266] gi|119354279|gb|ABL65150.1| metal dependent phosphohydrolase [Chlorobium phaeobacteroides DSM 266] Length = 470 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 27/242 (11%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI---------ATTI---LPDRVMRI 62 LI I L ++ + +VGG VRD LM+ S DIDI A TI LP R + + Sbjct: 13 LIEIGDLADRKGVPAYVVGGYVRDMLMHRSCSDIDIMVIGDPLPFAQTIKNELPGRNLVV 72 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 F + R + S S K+ F +I R + + T + D RR Sbjct: 73 FERFRTAQLEVSDS--------EKQTFKLEIVGARKESYNPDSRKPITETGTLEEDLARR 124 Query: 121 DFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL + +G ++D G+ L R ++ + +D LR++R RF A Sbjct: 125 DFTINALALSLNSSSRGLLVDQFNGIEHLSGRILRTPLEPKQTFSDDPLRMMRAARFSAQ 184 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +D ++A + + ++I+S ERI E K+++ P + +Y G+ KE Sbjct: 185 L-DFRLDEAIILAMNEMHERIRIVSRERISQEFLKIMQCPKPSAGLSILYETGLLKEFMP 243 Query: 237 DV 238 +V Sbjct: 244 EV 245 >gi|332142885|ref|YP_004428623.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|332143070|ref|YP_004428808.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327552907|gb|AEA99625.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327553092|gb|AEA99810.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 439 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 36/264 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ LN +S +VGG VRD LM +D D+AT P+++ +F R Sbjct: 15 ANALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVATNATPEQIKGLFKNCRL---- 70 Query: 73 TSISYGTIKIICRKKYFDITTLR-----SDLITDGRYAKVVFTRDW-------------K 114 + I+ ++ ++ T R SD + AKVV RD + Sbjct: 71 IGRRFRLAHIVFGREIIEVATFRGHHQESDEDENVPKAKVVAKRDSHGQLVRDNVFGSIE 130 Query: 115 ADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFT NA+Y AD V D+ GL + R ++ IGD R ED +R+LR Sbjct: 131 EDAERRDFTFNAMYYSVADF--TVTDFANGLAAIEKREVELIGDPETRYREDPVRMLRAV 188 Query: 172 RFFAHYG----EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 RF G EK + +A++ L+ + R++ E KL + + ++ Sbjct: 189 RFAVKLGMRIEEKTAEPIKPLANL-----LQNIPPARLFEETLKLFLSGKGEVTFLMLHE 243 Query: 228 GGIFKEIFLDVQEISLDQLSQVIE 251 G+ + +F + D+ S+ ++ Sbjct: 244 YGLIEPLFPQLAPFLKDENSREMQ 267 >gi|237720154|ref|ZP_04550635.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_2_4] gi|260173994|ref|ZP_05760406.1| tRNA nucleotidyltransferase [Bacteroides sp. D2] gi|315922263|ref|ZP_07918503.1| tRNA nucleotidyltransferase [Bacteroides sp. D2] gi|229450706|gb|EEO56497.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_2_4] gi|313696138|gb|EFS32973.1| tRNA nucleotidyltransferase [Bacteroides sp. D2] Length = 477 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ R Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKQLGRGAHVSVFKNFGTAQVKYRGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GGL D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFGGLED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF G ID D + + K+ ++I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLG-FYIDDDTFESLCRNKERIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK++ + P + + G+ IF Sbjct: 213 IADELNKIILSPIPSKGFIDLERSGLLSLIF 243 >gi|229138330|ref|ZP_04266924.1| CCA-adding enzyme [Bacillus cereus BDRD-ST26] gi|228645095|gb|EEL01333.1| CCA-adding enzyme [Bacillus cereus BDRD-ST26] Length = 346 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++GK++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 68 MTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + A+ + +F + +L + E Sbjct: 120 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHLPYLQMSE 179 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 180 EKLLKATQ 187 >gi|162286726|ref|YP_001085363.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii ATCC 17978] gi|226702127|sp|A3M767|CCA_ACIBT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|193077880|gb|ABO12761.2| tRNA nucleotidyl transferase [Acinetobacter baumannii ATCC 17978] Length = 412 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDYLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ GK+ D GG NDL Sbjct: 60 LARTERKS--GQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQNDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+ ++ + +A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELDALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E ++ L + + N G K +F ++ Sbjct: 175 ERVWKETSRALMENHADIYFQTLRNCGALKHLFPEI 210 >gi|293371097|ref|ZP_06617634.1| HD domain protein [Bacteroides ovatus SD CMC 3f] gi|292633755|gb|EFF52307.1| HD domain protein [Bacteroides ovatus SD CMC 3f] Length = 474 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ R Sbjct: 31 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKQLGRGAHVSVFKNFGTAQVKYRGTE 90 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GGL D Sbjct: 91 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFGGLED 150 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF G ID D + + K+ ++I+S ER Sbjct: 151 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLG-FYIDDDTFESLCRNKERIEIISRER 209 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK++ + P + + G+ IF Sbjct: 210 IADELNKIILSPIPSKGFIDLERSGLLSLIF 240 >gi|161506232|ref|YP_001573344.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189081876|sp|A9MPV9|CCA_SALAR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|160867579|gb|ABX24202.1| hypothetical protein SARI_04425 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 413 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T ++Y Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQT-----HEEYA 59 Query: 90 DITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R S YA T + AD RRD TINAL D G++ID G DL Sbjct: 60 LARTERKSGSGYTGFTCYAAPDVTLE--ADLQRRDLTINALARDDDGQIIDPWHGRRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y + D+ L+ + A L+ L+ Sbjct: 118 ARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADDTLALMREMTAAGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E L +NP + + G + +F ++ + Sbjct: 175 ERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDAL 213 >gi|326431434|gb|EGD77004.1| hypothetical protein PTSG_07347 [Salpingoeca sp. ATCC 50818] Length = 560 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 18/238 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-----------SKTRYKVIPTSISYGT 79 + GG VRD L+ DIDI T L + + R+K++P Sbjct: 46 VAGGWVRDKLLGRESLDIDITTDSLSGSDLALHIEQLLKEKNEKDAARFKILPVPEQSAH 105 Query: 80 IKIICRKKY---FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 +++ K Y D+ LR+++ V D+ RRDFTINALY + Q + Sbjct: 106 LQVSTIKLYDLEIDLNALRTEVYDPESRIPKVSPGTILEDTARRDFTINALYYNINQDAI 165 Query: 136 IDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKA 193 D+ GL+DL ++ D ED LR+LR R+ YG K D+ + + Sbjct: 166 EDFTDTGLSDLDLGLVRTPADPLRSFKEDPLRVLRAIRYTGRYGFKLEDAARHAILDPQV 225 Query: 194 KKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K+ L+ +S ER E++K+ +A +PL + + N G++ +F E D Q++ Sbjct: 226 KECLQTKVSRERYGIEVDKMFKADHPLACLSLLCNLGLYDVVFHSPAEYHRDPTMQMV 283 >gi|293609675|ref|ZP_06691977.1| phosphatase [Acinetobacter sp. SH024] gi|292828127|gb|EFF86490.1| phosphatase [Acinetobacter sp. SH024] Length = 412 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDFLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ GK+ D GG DL Sbjct: 60 LARTERKS--GKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQTDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+T++ + +A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKTLRHVSEA---FAEDPLRVLRVARFAARYSSYGFQIAPETMQLMQTMAESGELDALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ERIW E ++ L + + + G K +F ++ Sbjct: 175 ERIWKETSRALLEDHADVYFQTLRDCGALKHLFPEI 210 >gi|262367096|gb|ACY63653.1| poly(A) polymerase [Yersinia pestis D182038] Length = 351 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 70 NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRNCRL----V 125 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 126 GRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQ 185 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 186 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL 245 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 246 -DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 302 >gi|229195837|ref|ZP_04322596.1| CCA-adding enzyme [Bacillus cereus m1293] gi|228587610|gb|EEK45669.1| CCA-adding enzyme [Bacillus cereus m1293] Length = 346 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++GK++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 68 MTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + A+ + +F + +L + E Sbjct: 120 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHLPYLQMSE 179 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 180 EKLLKATQ 187 >gi|255530766|ref|YP_003091138.1| polynucleotide adenylyltransferase region [Pedobacter heparinus DSM 2366] gi|255343750|gb|ACU03076.1| Polynucleotide adenylyltransferase region [Pedobacter heparinus DSM 2366] Length = 468 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 5/212 (2%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRD +N +DIDI + K + ++GT + + Sbjct: 23 EAYIVGGYVRDIFLNRPSKDIDIVVLGNGIEFAELVGKQLQSKVAVFKNFGTAMLKYQDL 82 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 + R + +V + D LRRDFTINAL + G+++D G+ Sbjct: 83 EIEFVGARKESYRSDSRKPIVENGTIEDDQLRRDFTINALAISLNKENYGQLVDPFNGIA 142 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL N+ I+ D +D LR++R RF ID+ + A K K+ + I+S E Sbjct: 143 DLNNKLIRTPLDPELTFSDDPLRMMRAIRFATQLN-FTIDAAAINAIKKQKERIGIVSKE 201 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 RI E+NK++ ++ P ++++ G+ + +F Sbjct: 202 RITDELNKIILSEVPSIGFKYLFDTGLLQLVF 233 >gi|312200959|ref|YP_004021020.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EuI1c] gi|311232295|gb|ADP85150.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EuI1c] Length = 517 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 35/247 (14%) Query: 31 IVGGAVRDSLMNLSVQ------------------------------DIDIATTILPDRVM 60 +VGG+VRD+L+ Q D+D T P+RV+ Sbjct: 43 LVGGSVRDALLGDLAQARPASSARPAATTPAKPAATTPAKPAGEPPDLDFTTDARPERVL 102 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLR 119 + I++GT+ + ++TT R++ G R V + +AD LR Sbjct: 103 EMTRGWAEATWEAGIAFGTVGLARAGTRLEVTTYRAESYDRGSRNPTVSYGDSLEADLLR 162 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NA+ + +D GG+ DL ++ G + +D LRILR RF A G Sbjct: 163 RDFTVNAMAVSVPDHEFVDLFGGMADLARGVLRTPGPPEVSLDDDPLRILRAIRFEAKLG 222 Query: 179 EKNIDSDGLVASIKAK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 LV +++A+ L+I++ ER+ E+ KL+ + +P + + + G + + Sbjct: 223 LTPTPE--LVEAMRARVDRLRIVAPERVRDELRKLIVSADPDRGLQRLVDVGAAAVVLPE 280 Query: 238 VQEISLD 244 + + ++ Sbjct: 281 LPALRME 287 >gi|82778389|ref|YP_404738.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella dysenteriae Sd197] gi|309785360|ref|ZP_07679991.1| poly A polymerase head domain protein [Shigella dysenteriae 1617] gi|123561586|sp|Q32BQ8|CCA_SHIDS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|81242537|gb|ABB63247.1| tRNA nucleotidyl transferase [Shigella dysenteriae Sd197] gi|308926480|gb|EFP71956.1| poly A polymerase head domain protein [Shigella dysenteriae 1617] Length = 412 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 149/354 (42%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYHQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLVFRIADETLTLMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETESALTTRNPQVFFQVLRDCGALRVLFPEI-----DALFGV-PAPAKWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|326566838|gb|EGE16977.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 103P14B1] gi|326576752|gb|EGE26659.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 101P30B1] Length = 389 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 123/302 (40%), Gaps = 50/302 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV------IPTSISYGTIKIIC 84 +VGGAVRD+++ L + D D +V+ + V P + + + I Sbjct: 5 LVGGAVRDAVLGLPITDKDFMVVGATPQVLLDLGFIQVGVDFPVFLHPKTQAEYALARIE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---------QQGKV 135 RK T + R + D +RRD TINAL + GKV Sbjct: 65 RKSGVGHTAFQVHADPSVR---------LEEDLIRRDLTINALAIEVKGLFDETPMTGKV 115 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI---DSDGLVASIK 192 ID+ GGL D++NRT++ + A ED LR+LR RFFA + DS + Sbjct: 116 IDFYGGLTDIQNRTLRHVSPAFS---EDPLRVLRVARFFARFAPLGFSIHDSTAKLMQDI 172 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 AK G + LS ER++SE K + I ++ LD+ L L+Q Sbjct: 173 AKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQ--------LDILPFILPTLAQHFN 224 Query: 252 AEQVFEWKIDSLL-----------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Q + L RF +L+S K + + + P+ IR F+ F + Sbjct: 225 TPQNRQRTFTRLAYTCTLNLPIFSRFAMLLSDLPKDDLSDCLDRLNAPKSIRQFIQIFNH 284 Query: 301 CN 302 C+ Sbjct: 285 CH 286 >gi|313765090|gb|EFS36454.1| tRNA adenylyltransferase [Propionibacterium acnes HL013PA1] gi|313815662|gb|EFS53376.1| tRNA adenylyltransferase [Propionibacterium acnes HL059PA1] gi|314916152|gb|EFS79983.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA4] gi|314917414|gb|EFS81245.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA1] gi|314921754|gb|EFS85585.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA3] gi|314930978|gb|EFS94809.1| tRNA adenylyltransferase [Propionibacterium acnes HL067PA1] gi|314955350|gb|EFS99755.1| tRNA adenylyltransferase [Propionibacterium acnes HL027PA1] gi|314959432|gb|EFT03534.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA1] gi|315099405|gb|EFT71381.1| tRNA adenylyltransferase [Propionibacterium acnes HL059PA2] gi|315102383|gb|EFT74359.1| tRNA adenylyltransferase [Propionibacterium acnes HL046PA1] gi|327454192|gb|EGF00847.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA3] gi|327456249|gb|EGF02904.1| tRNA adenylyltransferase [Propionibacterium acnes HL083PA2] gi|328755949|gb|EGF69565.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA1] gi|328758980|gb|EGF72596.1| tRNA adenylyltransferase [Propionibacterium acnes HL025PA2] Length = 507 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 3/217 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ K D +RRDFT+NA+ + D GL D+ + Sbjct: 129 VTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++K L +P + + I + ++ +SL++ Sbjct: 248 LSKTLLTDHPREGLDLLVTTRIADYVLPELPALSLER 284 >gi|229524432|ref|ZP_04413837.1| tRNA nucleotidyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338013|gb|EEO03030.1| tRNA nucleotidyltransferase [Vibrio cholerae bv. albensis VL426] Length = 403 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 92/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ +T K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQTVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTHHP 190 >gi|78222788|ref|YP_384535.1| PolyA polymerase family protein [Geobacter metallireducens GS-15] gi|78194043|gb|ABB31810.1| PolyA polymerase family protein [Geobacter metallireducens GS-15] Length = 880 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 100/415 (24%), Positives = 167/415 (40%), Gaps = 73/415 (17%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +GG RD L+ DIDI T+ D ++ F+ T + + +GT I+ + Sbjct: 485 IGGFARDLLLGGKNDDIDI--TVEGDGILFAETFAATHECRVKSHAKFGTAVIVLPDGFK 542 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLND 144 D+ + R + V K D RRDFTIN L G +IDY G D Sbjct: 543 IDVASTRLEFYETPGALPTVERSSLKMDLYRRDFTINTLAIQLNPANFGLLIDYFGAYRD 602 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSE 203 LR++ I+ + + +ED R+ R RF G + +D L+ + L L Sbjct: 603 LRDKVIRVLHNLS--FVEDPTRVFRAVRFEQRLGFQIARHTDNLIRNAVKMGFLDKLGGR 660 Query: 204 RIWSEINKLLEAKNPLNAIVHMYN----GGIFKEIFLDVQEIS-LDQLSQVI-------E 251 R+ +E+ +L + P+ AI+ M + G I ++ L+ + + LD++ +V+ + Sbjct: 661 RLLNELVIILREREPVRAILRMESLGLLGFIHPDLTLETENLRVLDEVKKVVTWFELLYQ 720 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF------------- 298 +QV W ++ F+ L S + M + S+ R LI Sbjct: 721 RDQVETW----VVYFLALTSLLADAAFFEMCTRLSVSEHYREKLIDMRVHGEQMLAVMER 776 Query: 299 ----------FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 N F + LS PE+ L Y+ K +++ F++L+ L + TC Sbjct: 777 KVAGKKPVLRSNIYFWLRGLS-PEV--LLYIMA-KTCRDEVRKFVSLYVTQL-REVTCM- 830 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 LTGDD+ G+PPG + IL +N +E+ Sbjct: 831 ----------------LTGDDLKAIGLPPGPRYREILDAVLSARLNGEVSTREEE 869 >gi|237747276|ref|ZP_04577756.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter formigenes HOxBLS] gi|229378627|gb|EEO28718.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter formigenes HOxBLS] Length = 427 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 18/217 (8%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD++M V D D + + ++ + K K P + T +++Y Sbjct: 6 VGGAVRDTVMGRPVHDRDYVVVGSAVEEMLSLGFKPVGKDFPVFLHPET-----KQEYAL 60 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G Y VF K D LRRD TINA+ ++G++ID GG D+ Sbjct: 61 ARTERK--VAPG-YKGFVFHASPEVTLKEDLLRRDLTINAMAMSEEGELIDPFGGKRDIE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSER 204 + + + +A ED +RILR RF A + + + + L+ + A + L ER Sbjct: 118 AKIFRHVSEA---FSEDPVRILRLARFAARFTDFTVAPETMALMKKMVASGEVDALVPER 174 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E+++ L + P I M+ G +F +++ + Sbjct: 175 VWKELSQGLMEEKPSRMIAIMHECGALARLFPEIEAL 211 >gi|152968433|ref|YP_001364217.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kineococcus radiotolerans SRS30216] gi|151362950|gb|ABS05953.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kineococcus radiotolerans SRS30216] Length = 508 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 23/227 (10%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPD---RVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD+ + D+D T PD R+++ + ++V +GTI + Sbjct: 61 SLVGGPVRDAFLGRRSADLDFTTDARPDDTVRLLKAWGDAHWEV---GRDFGTIGARKKD 117 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINAL--------YADQQGKVID 137 ++TT RS+ D R +V + D D RRDFT+NA+ +AD Sbjct: 118 VVVEVTTYRSESYDPDSRKPEVAYGDDLVGDLSRRDFTVNAMALRLPSLDFADPH----- 172 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GL DL ++ G A +D LR++R RF A + D + A + Sbjct: 173 --DGLTDLAAGVLRTPGTAERSFSDDPLRMMRAARFAAQL-RMRVAPDVVAAMTAMAARI 229 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I+S+ER+ E+ K L A +P+ + + + G+ + + ++ + L+ Sbjct: 230 AIVSAERVRVELEKTLLAADPVAGLRLLVDTGLAEHVLPELPALQLE 276 >gi|225682071|gb|EEH20355.1| tRNA nucleotidyltransferase [Paracoccidioides brasiliensis Pb03] Length = 646 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 43/247 (17%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPD-----------------RVMRIFSKTRYKVIPTS 74 GG VRD L+ + DID+A + R +IF + V+ Sbjct: 158 AGGWVRDKLLGVESHDIDVAINSMTGEKFGEGLKEYLSIPGNLRKYKIFHPSNPSVVDFI 217 Query: 75 ISYGTIKIICRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + K R K+ + T LR + TD V + DSLRRD Sbjct: 218 KLHKIEKNPERSKHLETATTRMFGLDIDFVNLRKETYTDESRNPQVEVGTPEEDSLRRDA 277 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-- 178 T+NAL+ + ++I D+ G GL D++N+ I+ + +D LR+LR RF + G Sbjct: 278 TVNALFYNIHTELIEDFTGQGLQDMKNKIIRTPMEPFQTFKDDPLRVLRLIRFASRLGYT 337 Query: 179 -----EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 E+ + D + +++KAK +S ERI EI K L +PL A+ + G++ Sbjct: 338 IDCDTEEAMKIDAIKSALKAK-----ISQERIGVEIEKTLRGPDPLTALQRINRLGLYDT 392 Query: 234 IFLDVQE 240 I + Q+ Sbjct: 393 ILANHQD 399 >gi|218246793|ref|YP_002372164.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8801] gi|218167271|gb|ACK66008.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8801] Length = 420 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 101/421 (23%), Positives = 180/421 (42%), Gaps = 80/421 (19%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +C+VGGAVRD+L+N S +D+ ++P+ + K I + G + + ++ Sbjct: 26 ACLVGGAVRDALLNCSRNYLDL-DFVVPNGAVETARK-----IANNYQAGFVVLDEQR-- 77 Query: 89 FDITTLRSDLITDGRYAKVVFTR-----------DWKADSLRRDFTINALYAD-QQGKVI 136 R A+VVF + + + D RRDFTINA+ D Q ++I Sbjct: 78 --------------RIARVVFKQGTVDFAQQEGENLEKDLRRRDFTINAIAYDVHQQQLI 123 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIK 192 D + G DL+ R ++ + + + + +D LR+LR +R EK ++ +A + Sbjct: 124 DPLKGSEDLKKRLLRMV--SLNNLKDDPLRLLRAYRQAIQLNFTIEEKTRETIRQLAPL- 180 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 +K +++ER+ +E+ LL ++ M G+ F +E++ D+L Q+++ Sbjct: 181 ----IKKVAAERVQTELGYLLSDSRGSQGLIDMAKDGLLNPWF---KELTEDKLQQLLKV 233 Query: 253 EQVF-----EWKIDSLLRFI--VLISWQDKKSILSMAKKFSL----PREIRYFLISFFNC 301 +QV + ID +F+ L S+QD I+ AK SL P + L++ Sbjct: 234 DQVVKLLRDQLAIDDFYQFLNYELDSYQDYSLIIQRAKLASLVLSVPEKAELELVNLKYS 293 Query: 302 NF-----------------NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 NQ +S+ E+ F GD + L + LAL L Sbjct: 294 RADIRMITKALTYLPLLEENQSKMSLRELYFFFLEVGD---VFPLIVILALARGILLTDI 350 Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 I + L P +TG D++K + P ++G +L + +I +E Sbjct: 351 LPLIYRYLDPKDQVAHPCPLITGHDLIKQLNLKPSPQIGQLLTEIQIAYIEGKILTKEEA 410 Query: 404 L 404 L Sbjct: 411 L 411 >gi|51244425|ref|YP_064309.1| polyA polymerase [Desulfotalea psychrophila LSv54] gi|50875462|emb|CAG35302.1| probable polyA polymerase [Desulfotalea psychrophila LSv54] Length = 497 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 52/320 (16%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D D + +L L +VGG VRD + + +D DI+T P ++ ++F + Sbjct: 71 DPDALFVLEKLRNAGFSGYLVGGGVRDLYLGKTPKDFDISTNARPGQLRKLFKNSNTIGR 130 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKA---DSLR 119 R++++ G K +++TLRS DL DG A + + D+ R Sbjct: 131 RFRLVQVFFKGG--------KTIEVSTLRSLSEHDL--DGPEAILAPNNTFGTLDEDAQR 180 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RD TIN+L+ + + +IDYVGG+ DL ++ +GD RI D +RI+R R + Sbjct: 181 RDLTINSLFYEIETHSIIDYVGGVEDLEKGIVRIVGDPKKRITRDPVRIMRAIRHCSR-N 239 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINK------------LLEAKNPLNAIVHMY 226 + I+ A + L + R+ E K L E + ++ Y Sbjct: 240 DFTIEEKSWEAICDQHQQLALCPPSRLRDEFLKDLYNCKIAPWFELAEKSSIFTILIKGY 299 Query: 227 NGGI---FKEIFLDVQEI-----SLDQLSQVIEA-EQVFEWKIDSLLRFIVLISWQDKK- 276 G + F E ++I ++D+++ I+A EQ + D +L +VLI+W + + Sbjct: 300 LGKLDLPFNETRSCREQIAATMATIDRMN--IQALEQKTPRQPDYVLFALVLIAWAESEF 357 Query: 277 SILSMAKK----FSLPREIR 292 S+LS +K F L ++IR Sbjct: 358 SLLSEQRKGALAFQLGKKIR 377 >gi|254449034|ref|ZP_05062487.1| tRNA nucleotidyltransferase [gamma proteobacterium HTCC5015] gi|198261319|gb|EDY85611.1| tRNA nucleotidyltransferase [gamma proteobacterium HTCC5015] Length = 392 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 135/358 (37%), Gaps = 81/358 (22%) Query: 31 IVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTS-----ISYGT 79 +VGGAVRD L+ L V+D D A +L ++ + + P S ++ Sbjct: 5 LVGGAVRDQLLGLDVKDRDWVVVGATAEDMLAQGYQQVGRQFPVFLDPQSKEEHALARTE 64 Query: 80 IKIICRKKYFDI-----TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 KI F++ TL DL LRRD TINA+ D+QG+ Sbjct: 65 TKIGPGYSGFEVHAAPDVTLEQDL-------------------LRRDLTINAMAQDRQGQ 105 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID G DL ++ I A ED LRILR RF A + + + D VA A+ Sbjct: 106 LIDEHAGQADLSAGVLRHISPAFR---EDPLRILRVARFAARFCQPLLARDFEVARETAQ 162 Query: 195 --------KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 ++ LS ER W E + + P + MY G + ++ + D Sbjct: 163 LLCKMVEANEVEALSKERAWQEFERAMGETQPRRFLEVMYQCGALQRLWAPA--VQSDDW 220 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 S++ W + + + S E+R+ I Sbjct: 221 SEL----------------------WPRLREVADIVPALSASPEVRFAAII--------G 250 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH---QDTCFILQVLSDIIHWKKP 361 L P+ K L G +L +A H N + H Q +L +L+ + ++KP Sbjct: 251 VLPAPQAKLLSEQMGAPKRFKQLAELVATHANTVKHSTRQPPPAVLNLLNKMDAFRKP 308 >gi|82703566|ref|YP_413132.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Nitrosospira multiformis ATCC 25196] gi|123543932|sp|Q2Y681|CCA_NITMU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|82411631|gb|ABB75740.1| metal dependent phosphohydrolase [Nitrosospira multiformis ATCC 25196] Length = 413 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 21/255 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGG+VRD ++ L V D D + + P+ ++ + + K P + + ++ Sbjct: 2 KTYLVGGSVRDEILGLPVTDHDYVVVGVSPEEMVHLGFRPVGKDFPVFLHPQS-----QE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R ++ G V+ + D RRD TINA+ D+ G +ID GG+ Sbjct: 57 QYALARTERK--VSRGYKGFEVYASPEVTLQEDLARRDLTINAIAKDEYGNIIDPFGGIA 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ IG A ED +R+LR RF A +G ++ L+ + + L S Sbjct: 115 DLEAGVLRHIGPA---FTEDPVRVLRTARFAARFGFHIAPETLALMNEMVHNGEVDALVS 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W EI + L ++P + + G I +V D L V + Q +ID+ Sbjct: 172 ERVWQEIARGLMERHPSRMFYALRDCGALTRIMPEV-----DALFGVPQPPQ-HHPEIDT 225 Query: 263 LLRFIVLISWQDKKS 277 + +++I + ++ Sbjct: 226 GVHVMMVIDYAASRN 240 >gi|303245446|ref|ZP_07331730.1| Polynucleotide adenylyltransferase region [Desulfovibrio fructosovorans JJ] gi|302493295|gb|EFL53157.1| Polynucleotide adenylyltransferase region [Desulfovibrio fructosovorans JJ] Length = 931 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 94/415 (22%), Positives = 167/415 (40%), Gaps = 49/415 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT---ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGG VRD L+ D+D+ I M RYK P + + ++ + Sbjct: 493 VVGGFVRDVLLKHPNTDVDLVVEGDGIAFAAAMTREMGGRYKAHPKFKT--AVVVLPSGQ 550 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 D+ T R + V K D RRDFT+NAL D+ G+++D+ G Sbjct: 551 RVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNALAVHLSPDRYGELVDFFGAQR 610 Query: 144 DLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKIL 200 D+++R ++ + H + +ED RI+R RF +G + +D L+ + L Sbjct: 611 DIKDRVLRVL----HSLSFVEDPTRIVRAIRFSERFGFRIGGQTDRLIKNAVRHSFFHRL 666 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW-- 258 S R++ E+ +LE K PL + M++ + I + ++ + + ++E E V W Sbjct: 667 SGSRVFHELQLILEEKTPLACLRRMHDYKLLAAIH-PLLALTPPRETVLMEVENVINWYR 725 Query: 259 --KIDS-----LLRFIVLISWQDKKSILSMAKKF-----------SLPREIRYFLISFFN 300 I+ L+ F+ L S D + + K+ +L IR FN Sbjct: 726 LLYIEPQPQAWLVYFLALCSGMDAEQFAVVGKRLNFSKRTAGDIATLRMRIRETAQGLFN 785 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 +++ LS +L++L + + + +A + + L L + Sbjct: 786 WEYHKGPLS-----ELYFLM-EPLPVEGALFLMARNPREPLQKYVSLYLTTL------RG 833 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 +TG+D+ GI PG +IL + I+ E L R + S Sbjct: 834 KRLEITGNDLKGIGIAPGPDYTSILRRVRGSVIDGHAPCRAEQLEMARRLAVGES 888 >gi|228952015|ref|ZP_04114110.1| CCA-adding enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229078818|ref|ZP_04211371.1| CCA-adding enzyme [Bacillus cereus Rock4-2] gi|229189717|ref|ZP_04316731.1| CCA-adding enzyme [Bacillus cereus ATCC 10876] gi|228593766|gb|EEK51571.1| CCA-adding enzyme [Bacillus cereus ATCC 10876] gi|228704500|gb|EEL56933.1| CCA-adding enzyme [Bacillus cereus Rock4-2] gi|228807547|gb|EEM54071.1| CCA-adding enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 346 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G +K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSTLGFSLEMKTKQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|311109372|ref|YP_003982225.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Achromobacter xylosoxidans A8] gi|310764061|gb|ADP19510.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Achromobacter xylosoxidans A8] Length = 366 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 34/272 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD+L+ L D D + P+ R +P G + + Sbjct: 14 IVGGAVRDALLGLPPGDHDWVVVGATPE------DMARRGFVPVG---GDFPVFLHPRSK 64 Query: 90 DITTLRSDLITDGRY---------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + L GR A V D + RRD T+NA+ Q G+++D +G Sbjct: 65 EEYALARTERKSGRGYKGFTFYTGADVTLEEDLR----RRDLTVNAIAQTQDGELVDPLG 120 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLK 198 G D+R+R + +G+A ED +RILR RF A +G+ ++ + L + Sbjct: 121 GAADVRDRIFRHVGEAFE---EDPVRILRLARFAARFGDFSVAPETIELCRRMVEAGEAD 177 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L +ER+W E+++ L A P + + G + ++Q +DQ + ++ + Sbjct: 178 ALVAERVWKELSRGLMAAAPSRMLGILQQCGALARVMPELQ--GVDQTAADVDRAAAQDL 235 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 + R+ +L ++ +M ++ +P E Sbjct: 236 SLPG--RYALLCRLTPERD--AMGRRLRVPTE 263 >gi|255036177|ref|YP_003086798.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dyadobacter fermentans DSM 18053] gi|254948933|gb|ACT93633.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dyadobacter fermentans DSM 18053] Length = 471 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 33/233 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-------------ATTILPDRVMRIFSKTRYKVIPTS 74 ++ I+GG VRD ++ + +DIDI A + PD + +F Sbjct: 26 EAYIIGGFVRDLILKRNSKDIDIVSIGSGIELAEMVAGRLGPDVFVSVFKNFGT----AQ 81 Query: 75 ISYGTIKI--ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LY 128 I G ++I + +K + R + DG A D RRDFTINA L Sbjct: 82 IRQGDLEIEFVGARKESYRSESRKPAVEDGTLAD---------DQNRRDFTINAMGISLN 132 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 A G+++D G++DLR + I+ D +D LR++R RF + +I+ D Sbjct: 133 AGTFGELVDPFEGMSDLRKKIIRTPLDPEITFSDDPLRMMRAIRFASQLN-FDIEPDTFD 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 A +K K + I+S ERI E+NK++ +K P +Y+ G+ IF ++ E+ Sbjct: 192 AIVKMKDRISIVSMERISDELNKIIRSKTPSYGFKLLYHAGLLAIIFPEMVEL 244 >gi|60682903|ref|YP_213047.1| putative polyA polymerase [Bacteroides fragilis NCTC 9343] gi|253566030|ref|ZP_04843484.1| tRNA nucleotidyltransferase [Bacteroides sp. 3_2_5] gi|60494337|emb|CAH09133.1| putative polyA polymerase [Bacteroides fragilis NCTC 9343] gi|251945134|gb|EES85572.1| tRNA nucleotidyltransferase [Bacteroides sp. 3_2_5] Length = 481 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ C Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKCHGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ND Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKGRFGELVDPFGGMND 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ + I+ D +D LR++R RF ID D + + ++ ++I+S ER Sbjct: 154 LKEKIIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNRERIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P + + G+ + IF ++ Sbjct: 213 IADELNKIMLSPIPSKGFIDLDRSGLLELIFPEL 246 >gi|212711310|ref|ZP_03319438.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM 30120] gi|212686039|gb|EEB45567.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM 30120] Length = 502 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 13/171 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F R+ Sbjct: 83 NALKVLYRLNKNGYEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFRNCRLVGRRF 142 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDFT 123 ++ I++ + + D +L + + + RD + D++RRDFT Sbjct: 143 RLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNG--MLLRDNIFGSIEEDAIRRDFT 200 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 +N+LY + V DYV GL DL++ I+ IGD R ED +R++R RF Sbjct: 201 VNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRAVRF 251 >gi|332521230|ref|ZP_08397688.1| Polynucleotide adenylyltransferase region [Lacinutrix algicola 5H-3-7-4] gi|332043323|gb|EGI79520.1| Polynucleotide adenylyltransferase region [Lacinutrix algicola 5H-3-7-4] Length = 472 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 22/224 (9%) Query: 29 SCIVGGAVRDSLMNL-SVQDIDIATT----ILPDRVMR-IFSKTRYKVIPTSISYGTIKI 82 S ++GG VRD L+ + +DIDI L +V + + +K + +V T YGT + Sbjct: 26 SYVIGGFVRDYLLQRGNAKDIDIVAVGSGIALAKQVAKNLPNKPKVQVFKT---YGTAML 82 Query: 83 ICRKKYFDITT----LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGK 134 KY DI R + + VV + D RRDF+INAL D G Sbjct: 83 ----KYNDIEVEFVGARKESYNENSRNPVVENGTLQDDQNRRDFSINALALDLSQDNFGD 138 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G+ DL+N+ I+ D +D LR++R RF G I+ + L A + Sbjct: 139 LLDPFNGVEDLQNKIIRTPLDPDITYSDDPLRMMRAIRFATQLG-FTIEKESLDAITRNN 197 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +KI++ ERI E+NK+LE+K P + + G+ K I ++ Sbjct: 198 NRIKIITKERIVVELNKILESKTPSIGFLLLEQTGLLKHILPEL 241 >gi|242238281|ref|YP_002986462.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya dadantii Ech703] gi|242130338|gb|ACS84640.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya dadantii Ech703] Length = 412 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 88/342 (25%), Positives = 150/342 (43%), Gaps = 34/342 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ V + D + P+ +++ + + P + T +++Y Sbjct: 5 LVGGAVRDNLLERPVTERDWVVVGATPEAMLQQGYQQVGRDFPVFLHPET-----KEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + + D LRRD TINA+ D G++ID GG DL++R Sbjct: 60 LARTERKSGHGYTGFVCQATPDITLEEDLLRRDLTINAIAQDDAGRLIDPYGGQQDLQDR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSSER 204 ++ + DA ED LR+LR RF +AH G + + + + G L L+ ER Sbjct: 120 ILRHVSDA---FSEDPLRVLRVARFAARYAHLGFHIAEETLTLMQMMTRAGDLDYLTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E K L P + + G +F ++ D+L V A + +ID+ + Sbjct: 177 VWKETEKALGTDAPQVYFQVLRDCGALAVLFPEI-----DRLYGV-PAPARWHPEIDTGI 230 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 V++S LSMA + S +IR+ ++ C+ K L+ + + +G Sbjct: 231 H--VMMS-------LSMAARLSPDIDIRFAVL----CHDVGKGLTPQALWPRHHGHGPAG 277 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + L N C + + D++H + L P T Sbjct: 278 VPLVQALCQRLRVPNAPRDLACLVTE-YHDLVHTVQILRPQT 318 >gi|307249388|ref|ZP_07531380.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858574|gb|EFM90638.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 510 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 115/234 (49%), Gaps = 16/234 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + + ++I Sbjct: 86 NALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGR-QCRLI-- 142 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG--RYAKV----VFTRD-----WKADSLRRDF 122 + I+ + +++ T R+D + + +KV + RD + D+ RRDF Sbjct: 143 GRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRRDF 202 Query: 123 TINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 ++N+LY D + +I D+ G+ DL+ + IGD R ED +R+LR RF A + Sbjct: 203 SVNSLYYDPKHNLIFDFFDGIADLKAGKLHLIGDPVVRYQEDPVRMLRAVRFMAKL-DMF 261 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D + LK + + R++ E KL ++ M G+F+ +F Sbjct: 262 LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEPLF 315 >gi|229069188|ref|ZP_04202479.1| CCA-adding enzyme [Bacillus cereus F65185] gi|228713940|gb|EEL65824.1| CCA-adding enzyme [Bacillus cereus F65185] Length = 346 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQRKIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G +K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSTLGFSLEMKTKQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|228957911|ref|ZP_04119651.1| CCA-adding enzyme [Bacillus thuringiensis serovar pakistani str. T13001] gi|229109091|ref|ZP_04238691.1| CCA-adding enzyme [Bacillus cereus Rock1-15] gi|229126949|ref|ZP_04255960.1| CCA-adding enzyme [Bacillus cereus BDRD-Cer4] gi|229144234|ref|ZP_04272648.1| CCA-adding enzyme [Bacillus cereus BDRD-ST24] gi|229149833|ref|ZP_04278061.1| CCA-adding enzyme [Bacillus cereus m1550] gi|228633514|gb|EEK90115.1| CCA-adding enzyme [Bacillus cereus m1550] gi|228639242|gb|EEK95658.1| CCA-adding enzyme [Bacillus cereus BDRD-ST24] gi|228656549|gb|EEL12376.1| CCA-adding enzyme [Bacillus cereus BDRD-Cer4] gi|228674369|gb|EEL29613.1| CCA-adding enzyme [Bacillus cereus Rock1-15] gi|228801827|gb|EEM48704.1| CCA-adding enzyme [Bacillus thuringiensis serovar pakistani str. T13001] Length = 346 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G +K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSTLGFSLEMKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|328952892|ref|YP_004370226.1| poly(A) polymerase [Desulfobacca acetoxidans DSM 11109] gi|328453216|gb|AEB09045.1| poly(A) polymerase [Desulfobacca acetoxidans DSM 11109] Length = 417 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 18/240 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 D D++ +L L+ + +VGG +RD + +D DIAT P + RIF + Sbjct: 22 DVDVLKVLYRLHHKGHLAYLVGGGIRDLWLGKQPKDFDIATDAHPQEIRRIFRNSRIIGK 81 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFT 123 R++++ G I +++T RS D + + + D+ RRD T Sbjct: 82 RFRLVQVFFKGGKI--------VEVSTFRSRSEFDAEVDMLAPNNTFGSPVEDAQRRDLT 133 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INAL+ + ++DYVGG+ DL++ I+ +G R D +R+LR R + G + I Sbjct: 134 INALFYNIADFSILDYVGGVKDLQDGIIRVVGPPEIRFQRDPVRMLRVLRHASRTGFQ-I 192 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D A + +++ S R+ E+ K + + M G+ IF ++E + Sbjct: 193 DPTAWSAIQSYRHLIRLCSPARVRDELLKDFRSGYCRDFFQLMLASGLLAAIFPHIEETT 252 >gi|237714012|ref|ZP_04544493.1| tRNA nucleotidyltransferase [Bacteroides sp. D1] gi|262407064|ref|ZP_06083613.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_22] gi|229445836|gb|EEO51627.1| tRNA nucleotidyltransferase [Bacteroides sp. D1] gi|262355767|gb|EEZ04858.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_22] Length = 477 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ R Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKYRGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFGGMED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF G ID D + + K+ ++I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLG-FYIDDDTFESLCRNKERIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK++ + P + + G+ IF Sbjct: 213 IADELNKIILSPIPSKGFIDLERSGLLPLIF 243 >gi|228920347|ref|ZP_04083693.1| CCA-adding enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839269|gb|EEM84564.1| CCA-adding enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 346 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G +K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSTLGFSLEMKTKQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|229043381|ref|ZP_04191098.1| CCA-adding enzyme [Bacillus cereus AH676] gi|228725962|gb|EEL77202.1| CCA-adding enzyme [Bacillus cereus AH676] Length = 346 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G +K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSTLGFSLEMKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|53714925|ref|YP_100917.1| tRNA nucleotidyltransferase [Bacteroides fragilis YCH46] gi|265766778|ref|ZP_06094607.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_16] gi|52217790|dbj|BAD50383.1| tRNA nucleotidyltransferase [Bacteroides fragilis YCH46] gi|263253155|gb|EEZ24631.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_16] gi|301164367|emb|CBW23925.1| putative polyA polymerase [Bacteroides fragilis 638R] Length = 481 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ C Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKCHGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ND Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKGRFGELVDPFGGMND 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ + I+ D +D LR++R RF ID D + + ++ ++I+S ER Sbjct: 154 LKEKIIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNRERIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P + + G+ + IF ++ Sbjct: 213 IADELNKIMLSPIPSKGFIDLDRSGLLELIFPEL 246 >gi|269103522|ref|ZP_06156219.1| tRNA nucleotidyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163420|gb|EEZ41916.1| tRNA nucleotidyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 410 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVM-RIFSK--TRYKVI--PTSISYGTIKIIC 84 +VGGAVRD+L+ L + D D + P++++ + F + T + V P + + Sbjct: 5 LVGGAVRDALLQLPIVDKDWVVVGSTPEQMLAQGFEQVGTDFPVFLHPKTKQEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D D V +D +RRD TINA+ + G +ID GG D Sbjct: 65 RKSGRGYTGFICDFTPD-----VTLEQDL----IRRDLTINAIAQAKDGTLIDPYGGQQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKIL 200 L +R ++ + A +ED LR+LR RF FAH G ++ L+ + L L Sbjct: 116 LEHRILRHVSPA---FVEDPLRVLRVARFAARFAHMGFTVAAETMALMQEMVISGELAAL 172 Query: 201 SSERIWSEINKLLEAKNP 218 + ER+W E K L ++NP Sbjct: 173 TPERVWKEWEKSLSSQNP 190 >gi|194431615|ref|ZP_03063906.1| multifunctional CCA protein [Shigella dysenteriae 1012] gi|194419971|gb|EDX36049.1| multifunctional CCA protein [Shigella dysenteriae 1012] gi|332086935|gb|EGI92070.1| poly A polymerase head domain protein [Shigella dysenteriae 155-74] Length = 412 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 147/361 (40%), Gaps = 63/361 (17%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL D G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y G + D L+ + L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAYLGFRIADETLTLMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP +F ++ D +A +V +ID+L Sbjct: 178 WKETESALTTRNPQ----------VFFQVLRDC------------DALRVLFPEIDALFG 215 Query: 266 FIVLISWQDKKS-------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 W + LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 216 VPAPARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L +++L H + I+++ I W+K Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRK 331 Query: 361 P 361 P Sbjct: 332 P 332 >gi|261253885|ref|ZP_05946458.1| tRNA nucleotidyltransferase [Vibrio orientalis CIP 102891] gi|260937276|gb|EEX93265.1| tRNA nucleotidyltransferase [Vibrio orientalis CIP 102891] Length = 425 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 25/218 (11%) Query: 16 INILSLLNKG----EDKSC---IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTR 67 + +L+LL G D S +VGGAVRD L+N++V D D + P+ ++ Sbjct: 5 VPLLALLANGIIKKRDDSVQRYLVGGAVRDQLLNINVYDKDWVVVGSTPEELLEKGYTAV 64 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA-KVVFTRD--WKADSLRRDFTI 124 K P + T ++++ T R + G + F D + D LRRD TI Sbjct: 65 GKDFPVFLHPKT-----KQEHALARTERK--VGQGYTGFECYFAADVTLEEDLLRRDLTI 117 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG-EK 180 NA+ D G ++D G DLR+R ++ + DA ED LR+LR RF A H G Sbjct: 118 NAMAQDSDGNIVDPFNGQQDLRDRVLRHVSDA---FTEDPLRVLRVARFAAKLNHLGFTI 174 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 ++ L+ I L L+ ER+W E +K L ++P Sbjct: 175 APETLNLMREIANSGELSHLTPERVWQEWHKSLSTQSP 212 >gi|119944355|ref|YP_942035.1| poly(A) polymerase [Psychromonas ingrahamii 37] gi|119862959|gb|ABM02436.1| poly(A) polymerase [Psychromonas ingrahamii 37] Length = 459 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 18/178 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L+ ++ +VGG VRD L+ L +D DI T P+ V +F R Sbjct: 32 DENALKVLYRLHNAGFRALLVGGGVRDLLLGLKPKDFDITTNATPEEVKALFRNCRL--- 88 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVV-------FTRD-----WKADSL 118 + I+ ++ ++ T R D G+ A+ V RD + D+ Sbjct: 89 -IGRRFRLAHILFGREVIEVATFRGHHDDDNGQDAQKVKQSKAGMLLRDNVYGSLEEDAE 147 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDFT+NALY D + D+ G+ DL+ R + IGD R ED +R++R RF A Sbjct: 148 RRDFTVNALYYDIADFAIYDFCNGMKDLQERRLTLIGDPEVRYREDPVRMIRAIRFSA 205 >gi|298479673|ref|ZP_06997873.1| polyA polymerase family protein [Bacteroides sp. D22] gi|298274063|gb|EFI15624.1| polyA polymerase family protein [Bacteroides sp. D22] Length = 477 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ R Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKYRGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFGGMED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF G ID D + + K+ ++I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLG-FYIDDDTFESLCRNKERIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK++ + P + + G+ IF Sbjct: 213 IADELNKIILSPIPSKGFIDLERSGLLPLIF 243 >gi|90406862|ref|ZP_01215054.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Psychromonas sp. CNPT3] gi|90312099|gb|EAS40192.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Psychromonas sp. CNPT3] Length = 448 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 30/184 (16%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L+ ++ +VGGAVRD L+ L +D DI T P+ + +F R Sbjct: 19 DDNALKVLYRLHNAGFRALLVGGAVRDLLLGLKPKDFDITTNATPEEIKALFRNCRL--- 75 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-------------------LITDGRYAKVVFTRD 112 + I+ ++ ++ T R L+ D Y + Sbjct: 76 -IGRRFRLAHILFGREVIEVATFRGPHDQQSAQDKQKVKQSQGGMLLRDNVYGSL----- 129 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFT+NALY D + D+ G+ DL++R + IGD R ED +R+LR Sbjct: 130 -EEDAERRDFTVNALYYDIADFALYDFCNGMQDLKDRKLTLIGDPDVRYREDPVRMLRAI 188 Query: 172 RFFA 175 RF A Sbjct: 189 RFTA 192 >gi|294809798|ref|ZP_06768482.1| HD domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294443038|gb|EFG11821.1| HD domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 474 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ R Sbjct: 31 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKYRGTE 90 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ D Sbjct: 91 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFGGMED 150 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF G ID D + + K+ ++I+S ER Sbjct: 151 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLG-FYIDDDTFESLCRNKERIEIISRER 209 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK++ + P + + G+ IF Sbjct: 210 IADELNKIILSPIPSKGFIDLERSGLLPLIF 240 >gi|302877439|ref|YP_003846003.1| Polynucleotide adenylyltransferase region [Gallionella capsiferriformans ES-2] gi|302580228|gb|ADL54239.1| Polynucleotide adenylyltransferase region [Gallionella capsiferriformans ES-2] Length = 414 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 17/216 (7%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ L V+D D + P+ ++ + + P + K + + Sbjct: 10 VGGAVRDRLLGLPVKDHDWVVVGSTPEAMIAQGYQPVGRDFPV--------FLHPKTHEE 61 Query: 91 ITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ T Y V + D +RRDFT+NA+ D G +ID GG+ DLR Sbjct: 62 YALARTERKTAPGYKGFVVHAAPDVTLEQDLMRRDFTVNAIAQDTAGNLIDPHGGMTDLR 121 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERI 205 ++ + A + ED +RILR RF A +G ++ L+ + + L SER+ Sbjct: 122 AGILRHVSSAFN---EDPVRILRAARFAARFGFHIAPETQALMCDMVNNGEVDALVSERV 178 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 W E+++ L + P + + G +I ++ + Sbjct: 179 WQELSRALMEQTPARFFTTLRDCGALAKIMPEIDAL 214 >gi|213967682|ref|ZP_03395829.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato T1] gi|301382742|ref|ZP_07231160.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. tomato Max13] gi|302063464|ref|ZP_07255005.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. tomato K40] gi|213927458|gb|EEB61006.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato T1] Length = 409 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPDVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ + LK L++E Sbjct: 119 RVLRHVSPA---FAEDPLRVLRVARFAARYAGHGFTVAPETLELMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L P I +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEDQPQVFIQVLHDCGALSELMPEVEAL 213 >gi|152995078|ref|YP_001339913.1| polynucleotide adenylyltransferase region [Marinomonas sp. MWYL1] gi|150836002|gb|ABR69978.1| Polynucleotide adenylyltransferase region [Marinomonas sp. MWYL1] Length = 365 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 24/232 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V D D + T P+++ + + K P + I +++Y Sbjct: 9 LVGGAVRDALLELPVIDHDWVVTGATPEQLEKKGFQQVGKQFPV-----FLHPISKEEY- 62 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R + Y + F+ + + D RRD TINA+ DQ G +ID G DL Sbjct: 63 --ALARKEKKQGEGYTGFICDFSPEISLEEDLERRDLTINAIAQDQNGTLIDPFNGQQDL 120 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILS 201 +R + + +A +ED LR+LR RF F H+G ++ L+ I + L LS Sbjct: 121 LDRVFRHVSNA---FVEDPLRVLRVARFAARFHHFGFTIAPETMSLMREISSSGELSALS 177 Query: 202 SERIWSEINKLLEAK--NPLNAIVHMYNG--GIFKEIFLDVQEISLDQLSQV 249 +ERIW E+ K L + N +++ N +F E + ++ D L+QV Sbjct: 178 AERIWKELEKALNTRHANVFFSVLKDANALDKLFPEFIWEDSQMLTDILNQV 229 >gi|157372526|ref|YP_001480515.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Serratia proteamaculans 568] gi|167006459|sp|A8GJU7|CCA_SERP5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157324290|gb|ABV43387.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Serratia proteamaculans 568] Length = 414 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 12/196 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRDSL+ + V D D + P + + + K P ++ T + Sbjct: 2 KTYLVGGAVRDSLLEIPVVDRDWVVVGAAPSELTALGYQQVGKDFPVFLNPKTHEEYALA 61 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + T +S G + D RRD TINA+ G++ID G+ DL+ Sbjct: 62 R----TERKSGQGYTGFTCYAAPDVTLEEDLQRRDLTINAIARSDDGELIDPFNGVADLQ 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSS 202 R ++ + DA ED LR+LR RF FAH G + A+ G L L++ Sbjct: 118 ARVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFSIAPETAELMRQMARSGELAALTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E K L++++P Sbjct: 175 ERVWKETEKALQSQSP 190 >gi|90407232|ref|ZP_01215419.1| tRNA nucleotidyltransferase [Psychromonas sp. CNPT3] gi|90311655|gb|EAS39753.1| tRNA nucleotidyltransferase [Psychromonas sp. CNPT3] Length = 408 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 85/358 (23%), Positives = 149/358 (41%), Gaps = 57/358 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKK 87 +VGGA+RD L++L V+D D + P ++ + K K P + + G + R + Sbjct: 5 LVGGALRDKLLDLKVKDRDHVVVNATPKMLLDLGYKQVGKDFPVFLHPTTGEEYALARTE 64 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 + G+ +V D RRD TINA+ GK+ID G NDL+N Sbjct: 65 RKNAPGYHGFDCYAGQDVSLV------EDLQRRDLTINAMACSDDGKIIDPYHGQNDLKN 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEK-NIDSDGLVASIKAKKGLKILSSE 203 + ++ + A ED LR+LR RF F H G + ++ L+ + L+ L+SE Sbjct: 119 KILRHVSPA---FCEDPLRVLRVARFAARFYHLGFRIASETLSLMRQLSLSGELESLTSE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E +K L +P + G +F +++ + + A + + +ID+ Sbjct: 176 RVWQETDKALATDDPQIYFSVLRECGALSILFPEIENLF------GVPAPKRWHPEIDTG 229 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYG 321 + ++ ++ A K S R F C + K L+ PE+ +G Sbjct: 230 IHTLM---------VVKQATKLSNDNAFR------FACLVHDLGKALTPPELWPSHKGHG 274 Query: 322 D------KVMIAKLKI--------FLALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +LK+ L ++ L H D +L ++ W+KP Sbjct: 275 ELGLKVIRAFCQRLKVPNEYRDLALLVSEHHTLIHSAVTLDAAILLNIMDKCDAWRKP 332 >gi|110598827|ref|ZP_01387084.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [Chlorobium ferrooxidans DSM 13031] gi|110339558|gb|EAT58076.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [Chlorobium ferrooxidans DSM 13031] Length = 513 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 25/229 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDI---------ATTI---LPDRVMRIFSKTRYKVIPTS-ISY 77 +VGG VRD LM DIDI A T+ L R +F + R + S + Sbjct: 63 LVGGYVRDLLMQRPCSDIDIMVIGDPVPFAGTVQRELHGRNFVLFERFRTAQLELSDPQH 122 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQG 133 G+ K+ ++ R + V D RRDFTINAL D + Sbjct: 123 GSFKV-------ELVGARKESYNPDSRKPVTLIGTLDDDLSRRDFTINALAMVLNRDGRN 175 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID+ GL+DLR+ +K D +D LR++R RF A K + D L A Sbjct: 176 DIIDHFNGLDDLRSGILKTPLDPEQTFSDDPLRMMRAARFAAQLDFKLL-PDVLAAMKSM 234 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + ++I+S ER+ E K+++A P ++ +Y G+ EI DV ++ Sbjct: 235 HERIRIVSIERVSHEFFKIMQASRPSVGLIILYETGLLHEILPDVAAMA 283 >gi|303242318|ref|ZP_07328804.1| CBS domain containing protein [Acetivibrio cellulolyticus CD2] gi|302590157|gb|EFL59919.1| CBS domain containing protein [Acetivibrio cellulolyticus CD2] Length = 879 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 107/403 (26%), Positives = 173/403 (42%), Gaps = 43/403 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI-KIICRKKYF 89 +VGG VRD ++ + DIDI R F++T V+ + T ++ Sbjct: 483 VVGGFVRDLILGVENLDIDIVVEGDAIAFARKFAETSKAVLTEYEKFQTAYAVLAEDLKI 542 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 DI T R + V K D RRDFTIN L + GK++D+ GG DL Sbjct: 543 DIVTARKEYYEFPGALPSVERGSIKDDLFRRDFTINCIAMKLNGREFGKIVDFYGGRRDL 602 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG--LKILSSE 203 + I+ + + +ED RILR RF YG K +D +I A L LS E Sbjct: 603 YDGIIRIL--YNFSFIEDPTRILRAVRFEQRYGFK-MDEKTEEFAIDAINSDVLDKLSRE 659 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-DQLSQVIEAEQ-------- 254 RI SE +L+ KN + + M G+ ++I+ EI L D+L ++E Sbjct: 660 RINSEFFYMLKEKNTVIMLERMQELGLLEKIY---PEIMLSDRLKMLMEKSDKHYDEFYN 716 Query: 255 --VFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN-------FN 304 + + ID +L ++ VL S +++ ++ +F L +E R ++ F N Sbjct: 717 SLINKKNIDKILVYLLVLYSDVCMENVPVLSDRFRLSKEYRDEILRFAKVRDLKLHEILN 776 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 S EI +F K + + L+L ++++ LS+I Sbjct: 777 GGEPSNYEIYCMF-----KGLALESLYMLSLMFDDMLKGAVLLYANNLSNIKT------K 825 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +TG D+ + GI PG ++ IL +E IN E++ ++ Sbjct: 826 ITGRDLQELGISPGPQIKKILEIVLKEKINGKIFTRSEEIDYV 868 >gi|318607077|emb|CBY28575.1| poly(A) polymerase [Yersinia enterocolitica subsp. palearctica Y11] gi|330859189|emb|CBX69540.1| poly(A) polymerase [Yersinia enterocolitica W22703] Length = 478 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 13/234 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R+ Sbjct: 57 NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRF 116 Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 ++ I++ R + T SD + + + RD + D+ RRDF Sbjct: 117 RLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQRRDF 176 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY + DY GGL DL+ I+ IG R ED +R+LR RF A + Sbjct: 177 TINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAAKL-DMT 235 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E KLL++ + + +F+ +F Sbjct: 236 ISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 289 >gi|262376603|ref|ZP_06069831.1| tRNA nucleotidyl transferase [Acinetobacter lwoffii SH145] gi|262308313|gb|EEY89448.1| tRNA nucleotidyl transferase [Acinetobacter lwoffii SH145] Length = 411 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 20/196 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D + P +++ + + K P + T +++Y Sbjct: 5 LVGGAVRDHLLGHPYHEKDYVVVGATPAQMLDLGYQPVGKDFPVFLHPQT-----KEEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y F D + D +RRD TINA+ D G+V D GG DL Sbjct: 59 --ALARTERKSGAGYHGFEFHTDVSVTLEQDLIRRDLTINAMAMDDAGQVYDPYGGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA +ED LR+LR RF A Y ++ L+ + L L+ Sbjct: 117 ENRILRHVSDA---FVEDPLRVLRIARFAARYTSAGFVIADETLALMQRLTESGELNALT 173 Query: 202 SERIWSEINKLLEAKN 217 ER+W E ++ L ++ Sbjct: 174 PERVWKETSRALSERH 189 >gi|282599943|ref|ZP_05972449.2| hypothetical protein PROVRUST_06072 [Providencia rustigianii DSM 4541] gi|282567252|gb|EFB72787.1| multifunctional CCA protein [Providencia rustigianii DSM 4541] Length = 419 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 26/200 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L + D D + P+ ++ + K P + K + Sbjct: 13 LVGGAVRDKLLGLPISDRDYVVVGTTPEAMLAKGFQQVGKDFPV--------FLHPKTHE 64 Query: 90 DITTLRSDLITDGRY-------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y A V D D LRRD TINA+ G++ID G+ Sbjct: 65 EYALARTERKIGAGYTGFSCYSAPDVTIED---DLLRRDLTINAIAQSDTGELIDPYHGV 121 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + DA LED LR+LR RF A Y ++ ++ L+ S+ L Sbjct: 122 KDLKNRVLRHVSDA---FLEDPLRVLRVARFAARYYQQGFRVAPETMTLMQSMVETGELS 178 Query: 199 ILSSERIWSEINKLLEAKNP 218 L+ ER+W E +K + + +P Sbjct: 179 HLTPERVWVETHKAIMSHSP 198 >gi|261855731|ref|YP_003263014.1| poly(A) polymerase [Halothiobacillus neapolitanus c2] gi|261836200|gb|ACX95967.1| poly(A) polymerase [Halothiobacillus neapolitanus c2] Length = 453 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 23/234 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 +N+L L+ + +VGG VRD L + +D D+ T P++V +F R+++ Sbjct: 28 LNVLQRLHDQGYAAFLVGGCVRDLLRGMRPKDFDVVTDAKPEQVRSLFRHARIIGRRFRI 87 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + I++ + + RSD GR + D RRDF NALY + Sbjct: 88 VHVIFGHDMIEVTTFRGGDEDGVRRSD---QGRILRDNVFGSIDEDVWRRDFACNALYYN 144 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++DYV G D+ ++ IG+ R ED +R+LR RF A G + D + A Sbjct: 145 FANAEIVDYVQGWQDIETGHLRIIGNPVTRYQEDPVRMLRAARFMAKLG-FTLTGDSVSA 203 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + + LK ++ R++ E K+ + GG FL ++E+ L Sbjct: 204 IQECRDLLKSIAPARLFDESIKI-------------FQGGYAWAAFLKLRELDL 244 >gi|56415144|ref|YP_152219.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364073|ref|YP_002143710.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|73619839|sp|Q5PC82|CCA_SALPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702082|sp|B5BG15|CCA_SALPK RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|56129401|gb|AAV78907.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095550|emb|CAR61115.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 413 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T ++Y Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQT-----HEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G +T +AD RRD TINAL D G++ID G DL Sbjct: 60 LARTERKS--GSGYTGFTCYTAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ Sbjct: 118 ARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E L +NP + + G + +F ++ Sbjct: 175 ERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|209696097|ref|YP_002264027.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Aliivibrio salmonicida LFI1238] gi|226702032|sp|B6EM10|CCA_ALISL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|208010050|emb|CAQ80373.1| tRNA nucleotidyltransferase (multifunctional CCA protein) [Aliivibrio salmonicida LFI1238] Length = 407 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 26/200 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+N+ V+D D + P + + ++ + P + T +++Y Sbjct: 5 LVGGAVRDSLLNIDVKDKDWVVVGSTPTHMNSLGYQSVGQDFPVFLHPRT-----KEEYA 59 Query: 90 DITTLRSDLITDGR-------YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 T R G+ YA+ T + D LRRD TINA+ +G +ID G Sbjct: 60 LARTERKS----GQGYKGFTCYAEADVT--LEEDLLRRDLTINAIAQSDKGLLIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDG--LVASIKAKKGLK 198 DL+NR ++ + +A +ED LR+LR RF A HY I + L+ ++ + L Sbjct: 114 EDLKNRLLRHVSNA---FVEDPLRVLRVARFAARFHYLGFTIAPETMQLMKTLVSSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L+ ER+W E K L +K+P Sbjct: 171 HLTPERVWQEWEKSLSSKHP 190 >gi|296133143|ref|YP_003640390.1| Polynucleotide adenylyltransferase region [Thermincola sp. JR] gi|296031721|gb|ADG82489.1| Polynucleotide adenylyltransferase region [Thermincola potens JR] Length = 876 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 98/375 (26%), Positives = 163/375 (43%), Gaps = 48/375 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI----SYGTIKIICRK 86 IVGG VRD L L V+++D + D + F+K + + + +GT +I Sbjct: 481 IVGGFVRDLL--LGVENLDFDLVVEGDGIA--FAKELAEFLCGRVRVHDKFGTAIVILSD 536 Query: 87 KY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGG 141 ++ D+ T R++ V K D RRDFTINA L G++ID+ GG Sbjct: 537 EFKIDVATARTEYYEYPAALPKVEISSLKQDLYRRDFTINAMAIALSQKNFGELIDFFGG 596 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG--LKI 199 DL + ++ + + +ED RILR RF YG I+ L + A K L Sbjct: 597 KRDLEEKVVRVLYNLS--FVEDPTRILRAVRFEQRYG-FTIEPQTLALAKGAIKAQILNK 653 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK----EIFLDVQEISLDQLS--QVIEAE 253 LS++R+ E+ +LE +PL AI+ M GI++ + +D + ISL + + + + Sbjct: 654 LSADRVREELKHILEETSPLGAIIRMKELGIWQFVLPQAMVDEEIISLIERAPKETTHIK 713 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 ++ I L + L+ + +I + L +E + L + C I Sbjct: 714 ELGFLDIKVWLIHLALLVHKSGATIEEIDTHLRLNKEEQLILKNILAC--------WEVI 765 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD----------IIHWKKPLF 363 +L + G KV +A + N + + F+L L D + K+ Sbjct: 766 VRLCAVPGAKVS------EIARYLNEMPAEGYVFLLLKLGDQRSVNNLVKCLKRMKRNKL 819 Query: 364 PLTGDDVVKYGIPPG 378 +TGDD+ + G PG Sbjct: 820 LITGDDIKRLGHQPG 834 >gi|229178043|ref|ZP_04305415.1| CCA-adding enzyme [Bacillus cereus 172560W] gi|228605531|gb|EEK62980.1| CCA-adding enzyme [Bacillus cereus 172560W] Length = 346 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G +K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSTLGFSLEMKTKQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|295084899|emb|CBK66422.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bacteroides xylanisolvens XB1A] Length = 477 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ R Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKYRGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFGGMED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF G ID D + + K+ ++I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLG-FYIDDDTFESLCRNKERIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK++ + P + + G+ IF Sbjct: 213 IADELNKIILSPIPSKGFIDLERSGLLPLIF 243 >gi|170766145|ref|ZP_02900956.1| multifunctional CCA protein [Escherichia albertii TW07627] gi|170125291|gb|EDS94222.1| multifunctional CCA protein [Escherichia albertii TW07627] Length = 412 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 152/354 (42%), Gaps = 49/354 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDRDWVVVGGTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINAL + G++ID GL DL+NR Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQNDDGEIIDPYNGLGDLQNRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSSERI 205 ++ + A ED LR+LR RF +AH G + D ++ G L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLVLMREMTHAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E L +NP + + G + +F ++ D L V A + +ID+ + Sbjct: 178 WKETESALTTRNPHVFFQVLRDCGALRVLFPEI-----DVLFGV-PAPAKWHPEIDTGIH 231 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--- 322 ++ LSMA S ++R+ + C+ K L+ PE+ + +G Sbjct: 232 TLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHHGHGPAGV 278 Query: 323 ---KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKP 361 + + +L++ L +++L H + I+++ I W+KP Sbjct: 279 KLVEQLCQRLRVPNEIRDLAKLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKP 332 >gi|332160459|ref|YP_004297036.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664689|gb|ADZ41333.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 472 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 13/234 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RY 68 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R+ Sbjct: 51 NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRF 110 Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRD-----WKADSLRRDF 122 ++ I++ R + T SD + + + RD + D+ RRDF Sbjct: 111 RLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQRRDF 170 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+LY + DY GGL DL+ I+ IG R ED +R+LR RF A + Sbjct: 171 TINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAAKL-DMT 229 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I + + L + R++ E KLL++ + + +F+ +F Sbjct: 230 ISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 283 >gi|301156041|emb|CBW15512.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Haemophilus parainfluenzae T3T1] Length = 414 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 26/250 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D + P+ ++ + K P ++ + + Sbjct: 5 LVGGAVRDQLLGLPVKDRDWVVVGATPEMLLAQGYQQVGKDFPVFLN--------PQNHE 56 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F+ D + D +RRD TINA+ D+ GK+ D G+ D+ Sbjct: 57 EYALARTERKSGKGYTGFICDFSDDITLEQDLIRRDLTINAIAQDKDGKLHDPYHGVEDI 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG----LVASIKAKKGLKILS 201 R ++ I A ED LR+LR RF A + G L+A + + L L+ Sbjct: 117 HQRILRHISPA---FAEDPLRVLRVARFAARFHHLGFSIAGETLKLMAELTEQGELAHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L +P ++ G K +F ++ +LD + + + +ID Sbjct: 174 AERVWMETEKALNEPHPEIYFETLHQVGALKVLFPEI--AALDGVPNPAK----YHPEID 227 Query: 262 SLLRFIVLIS 271 S + ++++ Sbjct: 228 SFIHTMLVLQ 237 >gi|28867772|ref|NP_790391.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|73619825|sp|Q88A53|CCA_PSESM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|28851007|gb|AAO54086.1| tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] Length = 409 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPDVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ + LK L++E Sbjct: 119 RVLRHVSPA---FAEDPLRVLRVARFAARYAGHGFTVAPETLELMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L P I +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEDQPQVFIQVLHDCGALSELMPEVEAL 213 >gi|229016893|ref|ZP_04173821.1| CCA-adding enzyme [Bacillus cereus AH1273] gi|229023099|ref|ZP_04179613.1| CCA-adding enzyme [Bacillus cereus AH1272] gi|228738245|gb|EEL88727.1| CCA-adding enzyme [Bacillus cereus AH1272] gi|228744454|gb|EEL94528.1| CCA-adding enzyme [Bacillus cereus AH1273] Length = 346 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G++ID G +R + I +GDA R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGEMIDLFAGQEAIRLKEITTVGDAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSTLGFSLEAKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|325122895|gb|ADY82418.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus PHEA-2] Length = 412 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDFLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ GK+ D GG DL Sbjct: 60 LARTERKS--GKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQTDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+T++ + +A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKTLRHVSEA---FAEDPLRVLRVARFAARYSSYGFQIAPETMQLMQTMAESGELDALTP 174 Query: 203 ERIWSEINKLL 213 ER+W E ++ L Sbjct: 175 ERVWKETSRAL 185 >gi|294657679|ref|XP_459981.2| DEHA2E15576p [Debaryomyces hansenii CBS767] gi|199432870|emb|CAG88230.2| DEHA2E15576p [Debaryomyces hansenii] Length = 577 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 116/245 (47%), Gaps = 32/245 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDR--VMRIFSK-TRYKVIPTSISYGTIKI----- 82 I GG VRD L+ D+DIA L R+ S +Y T + TIK Sbjct: 76 ITGGWVRDKLLGNDSNDLDIAINHLSGEEFASRLHSYLDQYHPSLTLKAIHTIKKNPEKS 135 Query: 83 ----ICRKKYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 C K F D LRS+ T ++ + D+LRRD T+NAL+ + QG Sbjct: 136 KHLETCTTKLFGLDIDFVNLRSEEYTTDSRVPIIECGTAEEDALRRDATLNALFYNINQG 195 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--- 189 + D+ G GL+DLRN ++ L+D LR+LR RF + + ++S+ L + Sbjct: 196 VIEDFTGKGLDDLRNGILRTPLQPLQTFLDDPLRVLRLIRFASRFNFL-VESETLESMTN 254 Query: 190 -SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-GGIFKEIFLDVQEISLDQLS 247 IK+ KI S ERI E+ K+L +KNP + H+ N G+ K IF + + Sbjct: 255 DEIKSTLVHKI-SRERIGVEVEKILTSKNPEYGL-HLINYVGLTKSIF------NAGPFN 306 Query: 248 QVIEA 252 Q+IEA Sbjct: 307 QIIEA 311 >gi|269966964|ref|ZP_06181036.1| Poly(A) polymerase [Vibrio alginolyticus 40B] gi|269828447|gb|EEZ82709.1| Poly(A) polymerase [Vibrio alginolyticus 40B] Length = 455 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 21/234 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R+++ Sbjct: 41 LKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRL 100 Query: 71 IPTSISYGTIKIIC--------RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 I++ + K + L+ D Y + D+ RRDF Sbjct: 101 AHIMFGRDIIEVATFRGHHQEQKNKSISQQSKEGMLLRDNVYGTI------DEDAERRDF 154 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF + + Sbjct: 155 TINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 213 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I+ D L + S R++ E KLL++ + L + +F+++F Sbjct: 214 IEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLF 267 >gi|90020374|ref|YP_526201.1| peptidase M, neutral zinc metallopeptidases, zinc-binding site [Saccharophagus degradans 2-40] gi|89949974|gb|ABD79989.1| Polynucleotide adenylyltransferase region [Saccharophagus degradans 2-40] Length = 429 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 16/195 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V++ D + P++++ +P + K+ + Sbjct: 23 LVGGAVRDTLLQLEVKERDWVVVGATPEQLIA------QNFVPVGKDFPVFLHPKTKEEY 76 Query: 90 DI--TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 + T +S G + D +RRD TINA+ D+QG + D G DL N Sbjct: 77 ALARTERKSGAGYTGFECYAAQDVTLEEDLIRRDLTINAIAQDEQGNLYDPYNGQADLNN 136 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGLVASIKAKKGLKILSSE 203 R ++ + DA ED +RILR RF A Y + + L+ S+ A + L E Sbjct: 137 RILRHVSDA---FTEDPVRILRIARFAARYHKLGFSIAPTTLMLMKSMVADGEVDHLVPE 193 Query: 204 RIWSEINKLLEAKNP 218 R+W E+++ LE NP Sbjct: 194 RVWKEMSRALEEDNP 208 >gi|256833750|ref|YP_003162477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Jonesia denitrificans DSM 20603] gi|256687281|gb|ACV10174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Jonesia denitrificans DSM 20603] Length = 492 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 15/235 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVI 71 +I + L + + IVGG VRD+L+ + D+D AT+ PD ++R + + + + Sbjct: 30 VIELGELFHAAGHELAIVGGPVRDALLGRTSHDLDFATSASPDETEALLRTWGDSHWDI- 88 Query: 72 PTSISYGTIKII------CRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTI 124 +GTI + +ITT R+D R V F D RRDFT+ Sbjct: 89 --GKEFGTIGAMRHGVNGSDDIVVEITTYRTDKYDPTSRKPLVAFGDTLDGDLSRRDFTV 146 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ + D GLNDL + ++ +D LR++R RF A G ++ Sbjct: 147 NAMAIRLPELTFADPFDGLNDLSHGLLRTPIRPEQSFDDDPLRMMRAARFAAQLG-FTVE 205 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 D A + I+S+ER+ E+ KL+ + +P+ + + N G+ + +V Sbjct: 206 PDAFAAIAAMAGRISIVSAERVRDELTKLMLSAHPVTGLEVLVNTGLAHHVIPEV 260 >gi|254282300|ref|ZP_04957268.1| multifunctional CCA protein [gamma proteobacterium NOR51-B] gi|219678503|gb|EED34852.1| multifunctional CCA protein [gamma proteobacterium NOR51-B] Length = 371 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 13/180 (7%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D RRD TINA+ ++G+VID GG DL+ R ++ + +ED LR+LR RF A Sbjct: 87 DLQRRDLTINAMAMSEKGEVIDPYGGQRDLQARVLRHVSP---HFVEDPLRVLRVARFAA 143 Query: 176 HYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 Y N ++ L+ ++ + L LS ERIW E + L K+P + + G Sbjct: 144 RYHHLNFKVASETTDLMRTLVTEGELAHLSVERIWVETERALAEKSPEVFFRVLDSCGAL 203 Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 +++ D+ +D+L + +W + R+ L+S D + ++F P+ + Sbjct: 204 EQLIPDIGVADIDRL------KNASQWTSRTECRWAALLSQLDATRAEHINRQFKTPKRV 257 >gi|261493336|ref|ZP_05989862.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496601|ref|ZP_05992981.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307804|gb|EEY09127.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310980|gb|EEY12157.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 443 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 27/180 (15%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------R 67 + I+I+ L ++ IVGG +RD L+ +D DIAT P+ + RIF + R Sbjct: 23 NAISIVDKLQIAGYEAYIVGGCIRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRR 82 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--DLITDGRYAKV----VFTRD-----WKAD 116 +++ I YG ++ F++ T R+ + + + +KV + RD + D Sbjct: 83 FRL--AHIVYG-------REIFEVATFRAGHESHRNDKISKVSDEGMLLRDNVYGTLRDD 133 Query: 117 SLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY D ++ + D+ G+ DLR + IG+ R ED +R+LR RF A Sbjct: 134 AERRDFTVNALYYDIKRNLIFDFFNGIEDLRAGKLSLIGEPAIRYQEDPVRMLRAVRFMA 193 >gi|62181721|ref|YP_218138.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167551881|ref|ZP_02345634.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|224585007|ref|YP_002638806.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|73619836|sp|Q57JQ5|CCA_SALCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|254813697|sp|C0PYX7|CCA_SALPC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|62129354|gb|AAX67057.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205323384|gb|EDZ11223.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|224469535|gb|ACN47365.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716207|gb|EFZ07778.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 413 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T ++Y Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQT-----HEEYA 59 Query: 90 DITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R S YA T +AD RRD TINAL D G++ID G DL Sbjct: 60 LARTERKSGSGYTGFTCYAAPDVT--LEADLQRRDLTINALARDDDGQIIDPYHGRRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ Sbjct: 118 ARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E L +NP + + G + +F ++ Sbjct: 175 ERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|262393336|ref|YP_003285190.1| poly(A) polymerase [Vibrio sp. Ex25] gi|262336930|gb|ACY50725.1| poly(A) polymerase [Vibrio sp. Ex25] Length = 453 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 21/234 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 + +L LN + +VGG VRD L+ +D DIAT P+++ ++F R+++ Sbjct: 39 LKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRL 98 Query: 71 IPTSISYGTIKIIC--------RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 I++ + K + L+ D Y + D+ RRDF Sbjct: 99 AHIMFGRDIIEVATFRGHHQEQKNKSISQQSKEGMLLRDNVYGTI------DEDAERRDF 152 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF + + Sbjct: 153 TINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 211 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I+ D L + S R++ E KLL++ + L + +F+++F Sbjct: 212 IEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLF 265 >gi|30249583|ref|NP_841653.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Nitrosomonas europaea ATCC 19718] gi|73619813|sp|Q82U82|CCA_NITEU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|30138946|emb|CAD85525.1| Poly A polymerase family:HD domain [Nitrosomonas europaea ATCC 19718] Length = 412 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 15/212 (7%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGG+VRD L+ L V+D D + P+ ++R+ + K P + T ++Y Sbjct: 6 VGGSVRDELLGLPVKDQDYVVVGATPEEMVRLGYRPVGKDFPVFLHPET-----HEQYAL 60 Query: 91 ITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R I G V+ + D RRD TINA+ D+ G ++D GG+ DL+ Sbjct: 61 ARTERK--IARGYKGFEVYAAPGVTLQEDLARRDLTINAMARDEAGDIVDPFGGIADLQA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERIW 206 ++ IG A +ED +R+LR RF A +G + ++ L+ I + L ER+W Sbjct: 119 GILRHIGPA---FVEDPVRVLRVARFAARFGFQIAPETLELMKEIVHTGETEALVPERVW 175 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 EI L +P + G I +V Sbjct: 176 QEIAHGLMESHPSRMFYVLRECGALARILPEV 207 >gi|269958130|ref|YP_003327919.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Xylanimonas cellulosilytica DSM 15894] gi|269306811|gb|ACZ32361.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Xylanimonas cellulosilytica DSM 15894] Length = 500 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 10/238 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I + +L + +VGG VRD+ + + D+D AT+ PD+ + ++ Sbjct: 24 IELGTLFQAAGHELALVGGPVRDAFLGRASNDLDFATSATPDQTQELLARWGDAHWDIGK 83 Query: 76 SYGTI--KIICRKKY-----FDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINAL 127 +GTI + R + ++TT R+D R V F D RRDFT+NA+ Sbjct: 84 EFGTIGARRFGRGEQAADVVVEVTTYRTDEYDPASRKPVVAFGDTLDGDLSRRDFTVNAM 143 Query: 128 YADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 +D GL DL ++ +D LR++R RF A G +++ Sbjct: 144 AVRLPDLTFVDPFDGLGDLARGVLRTPIAPERSFDDDPLRMMRAARFAAQLG-FTVEAGT 202 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 L A + ++I+S+ER+ +E++KLL A P + + + G+ + + ++ + L+ Sbjct: 203 LAAIVAMAGRIEIVSAERVQAELSKLLLADKPRRGLEVLVDTGLAEHVLPELPALRLE 260 >gi|119896784|ref|YP_931997.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Azoarcus sp. BH72] gi|166233841|sp|A1K2Q5|CCA_AZOSB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|119669197|emb|CAL93110.1| tRNA-nucleotidyltransferase [Azoarcus sp. BH72] Length = 412 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 31/268 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L V+D D + PD ++ + K P + T + Sbjct: 2 RTYVVGGAVRDALLGLPVKDRDWVVVGATPDEMLARGFRPVGKDFPVFLHPQTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F + D RRD TINA+ D G +ID GG+ Sbjct: 57 ---EHALARTERKTGRGYAGFAFHTAPDVTLEEDLARRDLTINAIARDADGTLIDPYGGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKIL 200 DL R + + A ED +RILR RF A + + ++ + L+ ++ + L Sbjct: 114 ADLHGRVFRHVSPA---FAEDPVRILRVARFAARFADFSVAPETLALMRAMVDNGEVDHL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +ER+W E + L +P I + + G + + LD+L V + Q +I Sbjct: 171 VAERVWQEFARGLMEAHPARMIRVLRDCGALARLLPE-----LDRLFGVPQPAQ-HHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLP 288 D+ ++++ + A+ SLP Sbjct: 225 DTGEHVLMVVEQ-------AAARAHSLP 245 >gi|161486663|ref|NP_933364.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio vulnificus YJ016] gi|73619901|sp|Q7M7K5|CCA_VIBVY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase Length = 407 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 20/217 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + V D D + ++++ K P + T +++Y Sbjct: 5 LVGGAVRDKLLGIPVYDQDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKT-----KQEY- 58 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T Y + F+ D + D LRRD TINA+ D QG + D GG DL Sbjct: 59 --ALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGVLYDPYGGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 ++R ++ + +A +ED LR+LR RF A ++ L+ SI A L L+ Sbjct: 117 QDRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E +K L P + + G + ++ Sbjct: 174 AERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEI 210 >gi|217077799|ref|YP_002335517.1| polyA polymerase family protein [Thermosipho africanus TCF52B] gi|217037654|gb|ACJ76176.1| polyA polymerase family protein [Thermosipho africanus TCF52B] Length = 859 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 138/299 (46%), Gaps = 28/299 (9%) Query: 13 SDLINILSLLNK-GEDKSC---IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 S ++N+L L+ GEDK +VGG VRD L+ L DIDI + SK Sbjct: 450 SRILNLLRLIGSYGEDKKMPVYVVGGFVRDLLLGLENYDIDIVVEGNGLEFAKYASKQLG 509 Query: 69 KVIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA- 126 + + T + + + DI T R++ V K D RRDFTINA Sbjct: 510 AKMVEHEKFLTASLFFKDGFRIDIATARTEYYEKPADLPQVDISTIKKDLYRRDFTINAM 569 Query: 127 ---LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEKN 181 L + G + D+ DL+ I+ + H++ +ED RI+R RF +G K Sbjct: 570 AIKLNTKEFGLLYDFFDSRKDLKEGLIRVL----HKLSFVEDPTRIIRAVRFEQRFGFK- 624 Query: 182 IDSDGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI----- 234 I+ + L + G L+ +S +RI E+ K+LE + PLNAI + I K I Sbjct: 625 IEEETLRILNETLNGGFLEKVSGQRIRQELEKILEEREPLNAIKRLAQLKILKHIFPKTY 684 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPRE 290 F V E L+ L + + KI+ SLLR +L+ + D ++ + KK+ +P++ Sbjct: 685 FTSVMEKKLENLFNNLRIIKELYKKINVFYSLLR--ILLEYYDIDTLKKVIKKYGIPKK 741 >gi|16766504|ref|NP_462119.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990243|ref|ZP_02571343.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|73619845|sp|Q8ZLY4|CCA_SALTY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|16421761|gb|AAL22078.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205331228|gb|EDZ17992.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248334|emb|CBG26171.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995398|gb|ACY90283.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159757|emb|CBW19276.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914231|dbj|BAJ38205.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225886|gb|EFX50940.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131565|gb|ADX18995.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990070|gb|AEF09053.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 413 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T ++Y Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQT-----HEEYA 59 Query: 90 DITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R S YA T +AD RRD TINAL D G++ID G DL Sbjct: 60 LARTERKSGSGYTGFTCYAAPDVT--LEADLQRRDLTINALARDDAGQIIDPYHGRRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ Sbjct: 118 ARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E L +NP + + G + +F ++ Sbjct: 175 ERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|257458797|ref|ZP_05623920.1| polyA polymerase family protein [Campylobacter gracilis RM3268] gi|257443785|gb|EEV18905.1| polyA polymerase family protein [Campylobacter gracilis RM3268] Length = 366 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 16/254 (6%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKT 66 K + + D I +L L K + +VGG VRD + + D+D+ + P R +I Sbjct: 2 KIYQNDDFIALLDYLKKFSSRIYLVGGCVRDHFLGRASADVDVELYDVGPHRFEQIMQDF 61 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTI 124 + + S + + K FDI+ R++ T + V D + S RRDFTI Sbjct: 62 GAQGVGKSY------FVYKYKSFDISLPRTESKTGIGHKGFSVALATDEREASRRRDFTI 115 Query: 125 NALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ + GKV+D+ GGL DL R ++ + +ED LR+ R +F A + + Sbjct: 116 NAMMINAISGKVLDFYGGLADLHARILRVVDP--RTFVEDSLRVYRAVQFAARF---ELR 170 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEIS 242 ++ + + LS ER+ +E+ K A ++ M G+++ +F L + + Sbjct: 171 TEHHTLELMRSIDVSDLSCERVKAELIKFFRAPAHRYGMMLMQELGLYERVFGLRIDTRT 230 Query: 243 LDQLSQVIEAEQVF 256 ++L + IE + F Sbjct: 231 HERLIKFIEHGESF 244 >gi|168819731|ref|ZP_02831731.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343533|gb|EDZ30297.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087658|emb|CBY97422.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 413 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E L +NP + + G + +F ++ Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|15642442|ref|NP_232075.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153820126|ref|ZP_01972793.1| tRNA nucleotidyltransferase [Vibrio cholerae NCTC 8457] gi|227082567|ref|YP_002811118.1| tRNA nucleotidyltransferase [Vibrio cholerae M66-2] gi|229507494|ref|ZP_04396999.1| tRNA nucleotidyltransferase [Vibrio cholerae BX 330286] gi|229512311|ref|ZP_04401790.1| tRNA nucleotidyltransferase [Vibrio cholerae B33] gi|229519447|ref|ZP_04408890.1| tRNA nucleotidyltransferase [Vibrio cholerae RC9] gi|229606999|ref|YP_002877647.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio cholerae MJ-1236] gi|254849570|ref|ZP_05238920.1| multifunctional CCA protein [Vibrio cholerae MO10] gi|255746882|ref|ZP_05420827.1| tRNA nucleotidyltransferase [Vibrio cholera CIRS 101] gi|262162047|ref|ZP_06031063.1| tRNA nucleotidyltransferase [Vibrio cholerae INDRE 91/1] gi|298500196|ref|ZP_07010001.1| tRNA nucleotidyltransferase [Vibrio cholerae MAK 757] gi|73619894|sp|Q9KPC6|CCA_VIBCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|254813702|sp|C3LQY9|CCA_VIBCM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|9657022|gb|AAF95588.1| tRNA nucleotidyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126509333|gb|EAZ71927.1| tRNA nucleotidyltransferase [Vibrio cholerae NCTC 8457] gi|227010455|gb|ACP06667.1| tRNA nucleotidyltransferase [Vibrio cholerae M66-2] gi|229344136|gb|EEO09111.1| tRNA nucleotidyltransferase [Vibrio cholerae RC9] gi|229352276|gb|EEO17217.1| tRNA nucleotidyltransferase [Vibrio cholerae B33] gi|229354999|gb|EEO19920.1| tRNA nucleotidyltransferase [Vibrio cholerae BX 330286] gi|229369654|gb|ACQ60077.1| tRNA nucleotidyltransferase [Vibrio cholerae MJ-1236] gi|254845275|gb|EET23689.1| multifunctional CCA protein [Vibrio cholerae MO10] gi|255735284|gb|EET90684.1| tRNA nucleotidyltransferase [Vibrio cholera CIRS 101] gi|262028296|gb|EEY46953.1| tRNA nucleotidyltransferase [Vibrio cholerae INDRE 91/1] gi|297540889|gb|EFH76943.1| tRNA nucleotidyltransferase [Vibrio cholerae MAK 757] Length = 403 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 92/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V + D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTSVGYTGFAC------HYAPDVTLEE---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L A +P Sbjct: 170 QHLTAERVWQEWHKSLSAHHP 190 >gi|257059835|ref|YP_003137723.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8802] gi|256590001|gb|ACV00888.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8802] Length = 420 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 101/421 (23%), Positives = 179/421 (42%), Gaps = 80/421 (19%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +C+VGGAVRD+L+N S +D+ D V+ + + I + G + + ++ Sbjct: 26 ACLVGGAVRDALLNCSRNYLDL------DFVVPHCAVETARKIANNYQAGFVVLDEQR-- 77 Query: 89 FDITTLRSDLITDGRYAKVVFTR-----------DWKADSLRRDFTINALYAD-QQGKVI 136 R A+VVF + + + D RRDFTINA+ D Q ++I Sbjct: 78 --------------RIARVVFKQGTVDFAQQEGENLEKDLRRRDFTINAIAYDVHQQQLI 123 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIK 192 D + G DL+ R ++ + + + + +D LR+LR +R EK ++ +A + Sbjct: 124 DPLKGSEDLKKRLLRMV--SLNNLKDDPLRLLRAYRQAIQLNFTIEEKTRETIRQLAPL- 180 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 +K +++ER+ +E+ LL ++ M G+ F +E++ D+L Q+++ Sbjct: 181 ----IKKVAAERVQTELGYLLSDSRGSQGLIDMAKDGLLNPWF---KELTEDKLQQLLKV 233 Query: 253 EQVF-----EWKIDSLLRFI--VLISWQDKKSILSMAKKFSL----PREIRYFLISFFNC 301 +QV + ID +F+ L S+QD I+ AK SL P + L++ Sbjct: 234 DQVVKLLRDQLAIDDFYQFLNYELDSYQDYSLIIQRAKLASLVLSVPEKAELELVNLKYS 293 Query: 302 NF-----------------NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 NQ +S+ E+ F GD + L + LAL L Sbjct: 294 RADIRMITKALTYLPLLEENQSKMSLRELYFFFLEVGD---VFPLIVILALARGILLTDI 350 Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 I + L P +TG D++K + P ++G +L + +I +E Sbjct: 351 LPLIYRYLDPKDQVAHPCPLITGHDLIKQLNLKPSPQIGQLLTEIQIAYIEGKILTKEEA 410 Query: 404 L 404 L Sbjct: 411 L 411 >gi|325001233|ref|ZP_08122345.1| tRNA adenylyltransferase [Pseudonocardia sp. P1] Length = 503 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 15/226 (6%) Query: 31 IVGGAVRDSLM------NLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGG+VRD+L+ + D+D T P+ ++ I + T I++GT+ + Sbjct: 61 LVGGSVRDALLRGTGAADRDPGDLDFTTDARPETILEIVEGWADAIWDTGIAFGTVGLRR 120 Query: 85 RKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG---KVIDYV 139 ++TT R+D DG R +V F + D +RRDFT+NA+ + G + +D Sbjct: 121 GDDILEVTTFRADSY-DGASRNPEVRFGDTVEGDLVRRDFTVNAMAVELTGPERRFVDPH 179 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LK 198 GG L + +D LR+LR RF + G ++ + A++ G L Sbjct: 180 GGFAALAQGILDTPDLPERSFADDPLRMLRAARFVSQLG--FTPAERVTAAMTEMAGELA 237 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +++ER+ +E +KL+ +P + + + G+ + + +V ++ L+ Sbjct: 238 RITAERVQAEFSKLILGAHPRRGVELLCDTGLARHVVPEVPDMQLE 283 >gi|312142006|ref|YP_004009342.1| polynucleotide adenylyltransferase [Rhodococcus equi 103S] gi|311891345|emb|CBH50666.1| putative polynucleotide adenylyltransferase [Rhodococcus equi 103S] Length = 484 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 8/220 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P+RV +I T I++GTI + Sbjct: 45 LVGGSVRDAVLGRLGTDLDFTTDAHPERVQQILRGWADNQWDTGIAFGTISAAKGADQIE 104 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVGGLND 144 ITT R+D DG R +V + D +RRDFT+NA+ G + +D + G++ Sbjct: 105 ITTYRTDTY-DGVTRNPEVQYGTTLDEDLVRRDFTVNAMAVRVDGTGTFEFVDPLNGMDA 163 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + +D LR+LR RF + G + A ++ ++ +++ER Sbjct: 164 LLAGVLDTPAAPEISFNDDPLRMLRAARFVSQLG-FTLAPRVHEAIVEMSGQIERITAER 222 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + +E++KL+ + P++ + M G+ + ++ ++ L+ Sbjct: 223 VRTELDKLILGEFPIDGVNVMCETGLAARVIPEIPQLKLE 262 >gi|323142889|ref|ZP_08077600.1| multifunctional CCA protein [Succinatimonas hippei YIT 12066] gi|322417317|gb|EFY07940.1| multifunctional CCA protein [Succinatimonas hippei YIT 12066] Length = 427 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 97/220 (44%), Gaps = 20/220 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGA+RD L+ + D D + P ++ + P I T + Sbjct: 5 LVGGAIRDQLLKIDGADRDHVVVGSTPQEMLDLGFTQVGNDFPVFIHPKTGE-------- 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ Y V + D + D RRD TINA+ D+ GK+ID GG NDL Sbjct: 57 EYALARTEKKQGHGYTGFVCSFDKDVTLEEDLQRRDLTINAMAMDKNGKIIDPYGGQNDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSD--GLVASIKAKKGLKILS 201 NR ++ + + +ED LR+LR RF A HY I + L+ I L L+ Sbjct: 117 NNRILRHVSPS---FIEDPLRVLRVARFAAKLHYLGFYIADETISLMKEITESGELSSLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ERIW E K L +P + + G K IF +V + Sbjct: 174 PERIWIETQKALNTSDPQIFFIILRKIGALKIIFPEVDAL 213 >gi|260914325|ref|ZP_05920794.1| polyA polymerase [Pasteurella dagmatis ATCC 43325] gi|260631426|gb|EEX49608.1| polyA polymerase [Pasteurella dagmatis ATCC 43325] Length = 499 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 22/239 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + I ++ L++ ++ IVGG +RD L+ +D D+ T+ P+++ IF + V Sbjct: 80 NRNAIAVIEKLHRQGFEAYIVGGCLRDLLLGKHPKDFDVVTSARPEQIQNIFQRQCRLV- 138 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRD-----WKADSLRR 120 + I+ + ++ T R++ R + + RD + D+ RR Sbjct: 139 --GRRFRLAHIMFGRDIIEVATFRANHTESRNENHAKRSEEGMLLRDNVYGTIEQDAERR 196 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--- 176 DFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 197 DFTVNALYYNPQDNTLRDYFNGIEDLKAGKLRLIGDPATRYQEDPVRMLRSIRFMAKLDM 256 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + EK S+ + + LK + R++ E KLL+A + + G+F ++F Sbjct: 257 FLEK--PSEQPIRELAPL--LKNIPPARLFDESLKLLQAGYGVKTYKLLREYGLFDQLF 311 >gi|168243033|ref|ZP_02667965.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168463585|ref|ZP_02697502.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442826|ref|YP_002042471.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449287|ref|YP_002047202.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197249983|ref|YP_002148134.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264081|ref|ZP_03164155.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198241760|ref|YP_002217185.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388245|ref|ZP_03214857.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354119|ref|YP_002227920.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858462|ref|YP_002245113.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226701743|sp|B5REG2|CCA_SALG2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702077|sp|B5F6A0|CCA_SALA4 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702078|sp|B5FHT9|CCA_SALDC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702079|sp|B5QZ40|CCA_SALEP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702080|sp|B4TI55|CCA_SALHS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702081|sp|B4T674|CCA_SALNS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|194401489|gb|ACF61711.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407591|gb|ACF67810.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633285|gb|EDX51699.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213686|gb|ACH51083.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242336|gb|EDY24956.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936276|gb|ACH73609.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605343|gb|EDZ03888.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273900|emb|CAR38901.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205337890|gb|EDZ24654.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206710265|emb|CAR34622.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624961|gb|EGE31306.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629238|gb|EGE35581.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 413 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E L +NP + + G + +F ++ Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|294670961|ref|ZP_06735817.1| hypothetical protein NEIELOOT_02667 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307448|gb|EFE48691.1| hypothetical protein NEIELOOT_02667 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 408 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 97/219 (44%), Gaps = 27/219 (12%) Query: 31 IVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRDSL+ L V+D D A T+L + + + P S Sbjct: 5 LVGGAVRDSLLGLPVRDRDWVVVGADAETMLAQGFLPVGKDFPVFLHPDS---------- 54 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVG 140 R++Y R++ T Y F D + D +RRD TINA+ G +ID G Sbjct: 55 REEY---ALARTERKTAKGYTGFAFHADKDVTLEQDLMRRDLTINAIAQSSDGLIIDPFG 111 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKI 199 G DLR + ++ + A ED +RILR RF A YG E ++ L+ + Sbjct: 112 GEADLRRKILRHVSPA---FAEDPVRILRTARFAARYGFEVAEETMCLMRQMVEAGEADA 168 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E+ K L K P + G K + ++ Sbjct: 169 LVAERVWQELAKGLMEKQPRRMFEILRECGALKVLLPEI 207 >gi|254578934|ref|XP_002495453.1| ZYRO0B11748p [Zygosaccharomyces rouxii] gi|238938343|emb|CAR26520.1| ZYRO0B11748p [Zygosaccharomyces rouxii] Length = 539 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 34/255 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-------FSKTRYKVIPTSI-------- 75 I GG VRD L+ D+DIA ++ I + ++YKV P ++ Sbjct: 62 ITGGWVRDKLLGYDSHDLDIAINLMTGEQFAIQLGDYLRENYSKYKVTPNNVHKIDKNPE 121 Query: 76 -----SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 T K+ + D LRS+ T+ +V + D+LRRD T+NAL+ + Sbjct: 122 KSKHLETATTKLFGME--VDFVNLRSEEYTEQSRIPIVKFGTPEEDALRRDATLNALFYN 179 Query: 131 -QQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 +Q KV D+ G+ DL++ ++ L+D LR+LR RF + Y K ID + L Sbjct: 180 IKQNKVEDFTRRGIEDLKSGILRTPLPPRQTFLDDPLRVLRLIRFASKYNFK-IDGEALN 238 Query: 189 A----SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I G K+ S ERI E++K+L NPL I + I +F+ ++ L Sbjct: 239 EMNNRDINMAFGSKV-SKERIGVEVDKILRGPNPLLGISLIQQAHIDNVVFVWNNDLGLV 297 Query: 245 QLSQVIEAEQVFEWK 259 + ++ E +WK Sbjct: 298 EFNK----EHGEDWK 308 >gi|161616196|ref|YP_001590161.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189081877|sp|A9N5Y2|CCA_SALPB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|161365560|gb|ABX69328.1| hypothetical protein SPAB_03999 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 413 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTQERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E L +NP + + G + +F ++ Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|301063768|ref|ZP_07204272.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2] gi|300442123|gb|EFK06384.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2] Length = 437 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 28/216 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD + V D D+ T+ D ++ IF +++R+ S +GT+ I+ + Sbjct: 29 VVGGAVRDICLKRPVTDWDLCTSASVDALLEIFRNESRF-----SPGHGTMVIVMEGHSY 83 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNR 148 +ITT R + +D +RD TINA+ D G++ID G DL+NR Sbjct: 84 EITTFRG------------AAKTLASDLSKRDLTINAMALDPSTGEIIDPHHGRRDLQNR 131 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + + R ED LR+LR R A +K ++ +A + L ++ ER Sbjct: 132 ILRAVINPEDRFREDPLRLLRTVRLAAQLDFAIHQKTKEAIPALARL-----LSGVARER 186 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I E+ K+L P + G+ KE ++ E Sbjct: 187 IREELMKILMVPKPSKDFNTLITLGLLKEFLPELLE 222 >gi|254787093|ref|YP_003074522.1| multifunctional CCA protein [Teredinibacter turnerae T7901] gi|259585854|sp|C5BPQ5|CCA_TERTT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|237687060|gb|ACR14324.1| multifunctional CCA protein [Teredinibacter turnerae T7901] Length = 411 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D + P +++ K K P + T + Sbjct: 5 LVGGAVRDQLLGYPHHEQDWVVVGATPQQMLDAGFKPVGKDFPVFLHPETQE-------- 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R + T Y F D + D LRRD TINA+ D++G +ID G D+ Sbjct: 57 EYALARQERKTAPGYTGFAFHADETVTLEQDLLRRDLTINAIAMDEEGTIIDPYNGKRDI 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 RT++ + A ED +RILR RF A Y ++ L+ + + L Sbjct: 117 ETRTLRHVSQA---FCEDPVRILRIARFAARYHHLGFRIAPETLALMRDMVQAGEVDHLV 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E+++ LE ++P Sbjct: 174 AERVWKELSRALEEQHP 190 >gi|226941212|ref|YP_002796286.1| Cca [Laribacter hongkongensis HLHK9] gi|254813695|sp|C1DAG2|CCA_LARHH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226716139|gb|ACO75277.1| Cca [Laribacter hongkongensis HLHK9] Length = 405 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 121/265 (45%), Gaps = 24/265 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ IVGGAVRD L+ L V+D D + T P+ + R + + P + T Sbjct: 2 KTYIVGGAVRDRLLGLPVRDRDWVVTGETPESMRRRGFRPVGRDFPVFLHPDT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y F +AD RRD TINA+ D+ G+++D G Sbjct: 55 -HEEYALARTERKTARGYHGFSFHAAPDVTLEADLARRDLTINAMAEDENGELVDPFNGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 DL ++ +G+A +ED +RILR RF A +G D+ L+ + + L Sbjct: 114 QDLAAGILRHVGEA---FVEDPVRILRIARFAARFGFSIAEDTQNLMRFMVDDGEVDHLV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E++K L P + + G I +V D L V + + ++D Sbjct: 171 PERVWQELSKGLMEAQPSRFFTVLRDCGALARILPEV-----DALWGVPQRAD-YHPEVD 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFS 286 + + ++++ Q + L +A +F+ Sbjct: 225 TGVHAMLVLD-QSARDGLGLAARFA 248 >gi|168231806|ref|ZP_02656864.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470503|ref|ZP_03076487.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456867|gb|EDX45706.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333820|gb|EDZ20584.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 413 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T ++Y Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQT-----HEEYA 59 Query: 90 DITTLR---SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R S YA T +AD RRD TINAL D G++ID G DL Sbjct: 60 LARTERKSGSGYTGFTCYAAPDVT--LEADLQRRDLTINALARDDDGQIIDPYHGRRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ Sbjct: 118 ARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E L +NP + + G + +F ++ Sbjct: 175 ERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|302779730|ref|XP_002971640.1| hypothetical protein SELMODRAFT_412131 [Selaginella moellendorffii] gi|300160772|gb|EFJ27389.1| hypothetical protein SELMODRAFT_412131 [Selaginella moellendorffii] Length = 412 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 20/224 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP-----DRVMRIFSKT----RYKVIPTSISYG--- 78 + GG VRD L+ + D+DIA + DRV+R KT YKVI ++ Sbjct: 32 VAGGWVRDKLLGVESHDLDIALDDMTGQQFCDRVLRCLRKTDPSCSYKVIKSNPERSKHL 91 Query: 79 -TIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 T K+ D+ LRS+ + D R + D+ RRD TIN+L+ + KV Sbjct: 92 ETTKLEILGGELDVVNLRSETYSNDSRIPTSMKFGTPSEDAYRRDLTINSLFYNVAADKV 151 Query: 136 IDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASI 191 D+ G G+ DL+ I+ L+D LR+LR RF A + ++ ++ S+ Sbjct: 152 EDFTGRGVMDLKLGKIRTPLPPLVTFLDDPLRVLRSIRFAARFNFELDEELECMASADSV 211 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 KA KI + ERI EI +L KNP A+ ++ G + IF Sbjct: 212 KAAFETKI-TRERISQEIQAMLFGKNPARAMCLLHKLGYWPLIF 254 >gi|37197496|dbj|BAC93335.1| tRNA nucleotidyltransferase [Vibrio vulnificus YJ016] Length = 436 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 20/217 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + V D D + ++++ K P + T +++Y Sbjct: 34 LVGGAVRDKLLGIPVYDQDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKT-----KQEY- 87 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ T Y + F+ D + D LRRD TINA+ D QG + D GG DL Sbjct: 88 --ALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGVLYDPYGGQQDL 145 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 ++R ++ + +A +ED LR+LR RF A ++ L+ SI A L L+ Sbjct: 146 QDRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELSALT 202 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E +K L P + + G + ++ Sbjct: 203 AERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEI 239 >gi|228945235|ref|ZP_04107591.1| CCA-adding enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814470|gb|EEM60735.1| CCA-adding enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 346 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF K +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPKH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + S G K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSSLGFSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|134298994|ref|YP_001112490.1| polynucleotide adenylyltransferase region [Desulfotomaculum reducens MI-1] gi|134051694|gb|ABO49665.1| Polynucleotide adenylyltransferase region [Desulfotomaculum reducens MI-1] Length = 907 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 94/403 (23%), Positives = 177/403 (43%), Gaps = 46/403 (11%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF-D 90 VGG VRD L+ + D+D+ + +K + +GT +II Y+ D Sbjct: 482 VGGLVRDVLLKVENLDVDLVVEGNGIEMANELAKVIGGRVRPHEKFGTAEIIFPDGYWVD 541 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDLR 146 + T R + V K D RRDFTINA L ++ G+++DY G DL+ Sbjct: 542 VVTARVEYYEYPAALPQVEQSSLKHDLYRRDFTINAMAVALNPERFGELVDYFNGREDLQ 601 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKILSSER 204 N I+ + + +ED RILR RF Y + +I+ L + +K + LS+ER Sbjct: 602 NGAIRVLHNLS--FIEDPTRILRAIRFEQRY-DMDIEPQTLRLIKEAVREKVIARLSTER 658 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGI----FKEI-FLDVQEISLDQLSQVIE-------A 252 +W E+ +LE +P + + + G+ F EI F +VQ + + ++ Q + A Sbjct: 659 MWGELKHILEEADPEHMLDRLSELGVWDYLFPEITFWEVQYV-ISEIPQALMILRNWGWA 717 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE--------IRYFLISFFNCNFN 304 E +W L F+ ++ +++ ++ ++++L R I Y ++ + Sbjct: 718 EPAEKW----LPYFLSILHLTAQETAYTICQRYNLGRRQTEKVLDTIAYGRVALRRLSAT 773 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 ++ + + E+ K+ + +FL L L ++ +++ + ++ KP Sbjct: 774 EE-VPLSELTKIVQTLPREA----YPMFLTL----LEDKNAIRRFRLVMESVNKNKPT-- 822 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + G D+ G PG L Q ++ Q +E+L ++ Sbjct: 823 VNGKDIRDMGYQPGPMYRRALDSVWQARLDGMVQTREEELEYI 865 >gi|114319723|ref|YP_741406.1| poly(A) polymerase [Alkalilimnicola ehrlichii MLHE-1] gi|114226117|gb|ABI55916.1| poly(A) polymerase [Alkalilimnicola ehrlichii MLHE-1] Length = 479 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 108/266 (40%), Gaps = 29/266 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L + +VGG VRD + +D D+AT P+ V +F R Sbjct: 54 ENALKVLYRLKNAGYGAYLVGGGVRDLSLGHEPKDFDVATDARPEEVRELFRNCRLIGRR 113 Query: 68 YKVIPTSISYGTIKIICRKKYFDITT---------------------LRSDLITDGRYAK 106 +++ I++ + D + + +GR + Sbjct: 114 FRLAHVQFGREIIEVATFRALHDPESQDDDEADGDFDDDDVEVRDRAVGEVAFENGRIVR 173 Query: 107 VVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 + D+LRRDFTINALY + V+D+ GGL DL I+ +GD R ED + Sbjct: 174 DNVYGTLEEDALRRDFTINALYYNIADFSVVDHAGGLKDLDQGVIRLMGDPETRYREDPV 233 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 R+LR RF A G + I D + L + R++ E+ KL + Sbjct: 234 RMLRAVRFAAKLGFR-IHPDTAEPLPRMAHLLAEVPPARLFDEVLKLFMGGLAAETFEML 292 Query: 226 YNGGIFKEIF-LDVQEISLDQLSQVI 250 G+F +F + +EI DQ V+ Sbjct: 293 RQHGLFAPLFPMTEREIEADQHGVVL 318 >gi|168262835|ref|ZP_02684808.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348429|gb|EDZ35060.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 413 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E L +NP + + G + +F ++ Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|213622159|ref|ZP_03374942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 335 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 12/216 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLTLMREMTAAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 W E L +NP + + G + +F ++ + Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEIDAL 213 >gi|262170607|ref|ZP_06038285.1| tRNA nucleotidyltransferase [Vibrio mimicus MB-451] gi|261891683|gb|EEY37669.1| tRNA nucleotidyltransferase [Vibrio mimicus MB-451] Length = 403 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V D D + P ++ + K P + T + + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKTKE----EHAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T ++ + G + D LRRD TINA+ D+ G+VID GG DL + Sbjct: 61 ARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDELGQVIDPYGGQRDLAAKV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 ++ + A +ED LR+LR RF AH G E+ + L+A I L L++ Sbjct: 121 LRHVSPA---FVEDPLRVLRVARFAAKLAHLGFTVAEETMQ---LMADIAQSGELGHLTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E +K L +P Sbjct: 175 ERVWQEWHKSLSTNHP 190 >gi|331017638|gb|EGH97694.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 409 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPDVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ + LK L++E Sbjct: 119 RVLRHVSPA---FAEDPLRVLRVARFAARYAGHGFTIAPETLELMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L P + +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEDQPQVFVQVLHDCGALSELMPEVEAL 213 >gi|322613608|gb|EFY10549.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621200|gb|EFY18058.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624263|gb|EFY21097.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627999|gb|EFY24788.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633116|gb|EFY29858.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636306|gb|EFY33014.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643480|gb|EFY40042.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644801|gb|EFY41336.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648610|gb|EFY45057.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653662|gb|EFY49988.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657770|gb|EFY54038.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663871|gb|EFY60070.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669118|gb|EFY65269.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672889|gb|EFY68996.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678121|gb|EFY74184.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681297|gb|EFY77330.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687773|gb|EFY83740.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195585|gb|EFZ80762.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199734|gb|EFZ84824.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202518|gb|EFZ87558.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207994|gb|EFZ92940.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212454|gb|EFZ97271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215064|gb|EFZ99812.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222794|gb|EGA07159.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224125|gb|EGA08418.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230449|gb|EGA14567.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235200|gb|EGA19286.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239240|gb|EGA23290.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244402|gb|EGA28408.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247019|gb|EGA30985.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253500|gb|EGA37329.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256194|gb|EGA39930.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262630|gb|EGA46186.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267275|gb|EGA50759.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269323|gb|EGA52778.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 413 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 12/216 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMRDMTAAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 W E L +NP + + G + +F ++ + Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEIDAL 213 >gi|302338419|ref|YP_003803625.1| poly(A) polymerase [Spirochaeta smaragdinae DSM 11293] gi|301635604|gb|ADK81031.1| poly(A) polymerase [Spirochaeta smaragdinae DSM 11293] Length = 393 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 17/173 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----- 66 DSD I L ++ IVGGAVRD L S +D DIAT+ P +V ++F + Sbjct: 33 DSDAFAITRRLKDAGFEAYIVGGAVRDLLQGKSPKDFDIATSAYPKQVRKLFRNSRIIGR 92 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 R++++ + YG+ KII +++T R+D +G V T + D RRDF++NA Sbjct: 93 RFRLV--HVHYGSGKII------EVSTFRTD-DEEGNSNNVFGT--LEDDVKRRDFSVNA 141 Query: 127 LYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 LY D Q +ID+V G+ D+R +K + +D +R++R ++ G Sbjct: 142 LYFDPQKLHIIDFVDGVKDVRAGKMKSLLPLDRTFKDDPVRMIRAIKYSTGGG 194 >gi|254291646|ref|ZP_04962434.1| tRNA nucleotidyltransferase [Vibrio cholerae AM-19226] gi|150422418|gb|EDN14377.1| tRNA nucleotidyltransferase [Vibrio cholerae AM-19226] Length = 403 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTHHP 190 >gi|314987177|gb|EFT31269.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA2] gi|314990621|gb|EFT34712.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA3] Length = 507 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ K D +RRDFT+NA+ + D GL D+ + Sbjct: 129 VTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 248 LSKTLLTDHPREGL 261 >gi|309378616|emb|CBX22794.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 417 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 96/217 (44%), Gaps = 17/217 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + M + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFRPVGKDFPVFLHPET------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 55 -HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG E ++ L+ + L Sbjct: 114 QDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMKLMRKMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E+ K L KNP I + G K + +V Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|146281113|ref|YP_001171266.1| tRNA nucleotidyl transferase [Pseudomonas stutzeri A1501] gi|145569318|gb|ABP78424.1| tRNA nucleotidyl transferase [Pseudomonas stutzeri A1501] Length = 465 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 18/195 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ +V ++D VM+ P + + + + Sbjct: 80 VGGAVRDRLLGRAVSEVDWVVVGATPEVMQALG-----FRPVGADFPVF--LHPQSGEEY 132 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 R++ + Y F + D RRD TINA+ D+QG++ID GGL DL+ Sbjct: 133 ALARTERKSGRGYGGFTFHASPEVTLEEDLQRRDLTINAIAEDEQGQLIDPYGGLRDLQA 192 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y E ++ L+ + L L++E Sbjct: 193 RLLRHVSPA---FAEDPLRVLRVARFAARYTELGFRIADETLELMRQLARSGELSALTAE 249 Query: 204 RIWSEINKLLEAKNP 218 R W EI++ L P Sbjct: 250 RSWKEISRALMEPRP 264 >gi|289424329|ref|ZP_06426112.1| tRNA adenylyltransferase [Propionibacterium acnes SK187] gi|295131827|ref|YP_003582490.1| tRNA adenylyltransferase [Propionibacterium acnes SK137] gi|289155026|gb|EFD03708.1| tRNA adenylyltransferase [Propionibacterium acnes SK187] gi|291375544|gb|ADD99398.1| tRNA adenylyltransferase [Propionibacterium acnes SK137] Length = 499 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 61 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 120 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ K D +RRDFT+NA+ + D GL D+ + Sbjct: 121 VTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 180 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 181 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 239 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 240 LSKTLLTDHPREGL 253 >gi|322831346|ref|YP_004211373.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Rahnella sp. Y9602] gi|321166547|gb|ADW72246.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Rahnella sp. Y9602] Length = 411 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL V + D + P+ ++ + Y+ + + + Sbjct: 5 LVGGAVRDSLLNLPVSEHDWVVVGATPEYML----ENGYQQVGKDFPVFLHPVTHDEYAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S +G + D +RRD TINA+ G++ D G D+ R Sbjct: 61 ARTERKSGSGYNGFTCYAAPDVTLEQDLMRRDLTINAIAKSNDGELFDPYHGQRDIEQRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + DA ED LR+LR RF A + + ++ L+ + L+ L+ ER+ Sbjct: 121 LRHVSDA---FGEDPLRVLRVARFAARFAHLDFTVAPETQALMQQMAESGELEALTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E K L+ ++P + + G K +F ++ Sbjct: 178 WKETEKALQTQDPQVYFQVLRDCGALKVLFPEI 210 >gi|302130715|ref|ZP_07256705.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 409 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 18/218 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLVKG---YRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPDVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQQDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ + LK L++E Sbjct: 119 RVLRQVSPA---FAEDPLRVLRVARFAARYAGHGFTVAPETLELMRQLSESGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R W EI++ L P I +++ G E+ +V+ + Sbjct: 176 RSWKEISRALMEDQPQVFIQVLHDCGALSELMPEVEAL 213 >gi|226362873|ref|YP_002780653.1| tRNA nucleotidyltransferase [Rhodococcus opacus B4] gi|226241360|dbj|BAH51708.1| tRNA nucleotidyltransferase [Rhodococcus opacus B4] Length = 483 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 12/222 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P++V ++ S T I +GTI + + Sbjct: 45 LVGGSVRDAILGRLGTDLDFTTDARPEQVQKLLSGWVDNQWDTGIEFGTISAAKAGQQIE 104 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT R+D R V F + D +RRDFT+NA+ AD +D + G++ L Sbjct: 105 ITTYRADAYDRVSRNPVVQFGTKLEDDLVRRDFTVNAMAVRIGADGSQDFVDPLNGMDAL 164 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILSS 202 + + +D LR+LR RF + G + + + +A + + ++ +++ Sbjct: 165 LAGMLDTPSAPENSFNDDPLRMLRAARFVSQLGFTLHERVHA--AIADMAPQ--IERITA 220 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 ER+ +E++KL+ + P++ + M G+ + +V ++ L+ Sbjct: 221 ERVRAELDKLILGEFPIDGMNVMCETGLADFVLPEVPQMKLE 262 >gi|289427314|ref|ZP_06429027.1| tRNA adenylyltransferase [Propionibacterium acnes J165] gi|289159244|gb|EFD07435.1| tRNA adenylyltransferase [Propionibacterium acnes J165] Length = 499 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 61 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 120 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ K D +RRDFT+NA+ + D GL D+ + Sbjct: 121 VTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 180 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 181 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 239 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 240 LSKTLLTDHPREGL 253 >gi|255014465|ref|ZP_05286591.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_7] Length = 476 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 11/196 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++GG VRD +N +DID+ L RV + + Y + ++GT ++ Sbjct: 33 VIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGRGAY--LSVFKNFGTAQVKAGD 90 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 + R + + VV + D RRDFTINAL ++ G+++D GGL Sbjct: 91 LELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALALCLNKERYGELVDPFGGL 150 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 D+ TI+ D +D LR++R RF G ID D A I+ ++ + I+S Sbjct: 151 EDMDELTIRTPLDPDVTFSDDPLRMMRAIRFATQLG-FFIDPDTFDAIIRNRERISIISK 209 Query: 203 ERIWSEINKLLEAKNP 218 ERI E+NK++ + P Sbjct: 210 ERIVDELNKIVLSPKP 225 >gi|168184530|ref|ZP_02619194.1| conserved domain protein [Clostridium botulinum Bf] gi|182672350|gb|EDT84311.1| conserved domain protein [Clostridium botulinum Bf] Length = 398 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 23/206 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK--------- 81 I+GGA+RD ++N + DIDI P ++ + + TIK Sbjct: 31 IIGGAIRDIILNNKINDIDICLEGEPKELIYRMKNIKEYIYYDEFHTSTIKFQNNIQIDL 90 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG 140 I CRK+ ++ +G K+ + + K D RRDFTINAL D + K++D+ Sbjct: 91 IGCRKEKYE---------YEGALPKITLS-NIKNDLERRDFTINALAYDIVEDKILDFFN 140 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G+ DLR K I ++ +ED RI R ++ YG K D + SI K LK + Sbjct: 141 GMEDLRKG--KIIKIHNNSYMEDGTRIFRAIKYSIRYGFKIEDEKEIRESI-TKGTLKNI 197 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMY 226 S++RI SE+ L +N + AI Y Sbjct: 198 SNDRIVSELYSLCTEENWIEAIKQCY 223 >gi|165976336|ref|YP_001651929.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876437|gb|ABY69485.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 412 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P++++ + P + T +++Y Sbjct: 30 LVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEYA 84 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 R + + +G + D +RRD TINA+ D G++ D GG DL NR Sbjct: 85 LARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGKQDLANR 144 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A + ++ L+ + A L L++ER Sbjct: 145 LLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELAHLTAER 201 Query: 205 IWSEINKLLEAKNP 218 +W E K NP Sbjct: 202 VWLETQKAFATDNP 215 >gi|326336252|ref|ZP_08202424.1| polyA polymerase family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691761|gb|EGD33728.1| polyA polymerase family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 476 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 37/248 (14%) Query: 13 SDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSV-QDIDIAT------------TILPDR 58 S + ++S + ++ C +VGG VRD L+ + +DIDI T LP+ Sbjct: 9 SPIFELISKIADQNNQKCFVVGGFVRDLLLKRGIAKDIDIVTLGSGIELAEKVAAQLPNN 68 Query: 59 ----VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114 V + F K I + + RK+ + + R L+ +G A Sbjct: 69 PKISVFKNFGTAMIKTDSIDIEF----VGARKESYREDS-RKPLVENGTLAD-------- 115 Query: 115 ADSLRRDFTIN----ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 D RRDFTIN +L D G+++D GG+NDL+N+ I+ + + +D LR+LR Sbjct: 116 -DQNRRDFTINTLAISLNQDSFGELVDPFGGINDLQNQIIRTPLEPNITYSDDPLRMLRA 174 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + I+ L A K+ LKI+S+ERI E+NK+L + P +Y G+ Sbjct: 175 IRFATQLNFQ-IEEKSLQAIADNKERLKIISNERIAEELNKILASNKPSIGFKLLYETGL 233 Query: 231 FKEIFLDV 238 I ++ Sbjct: 234 LSLILPEL 241 >gi|313806788|gb|EFS45286.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA2] gi|313817579|gb|EFS55293.1| tRNA adenylyltransferase [Propionibacterium acnes HL046PA2] gi|313821595|gb|EFS59309.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA1] gi|313824460|gb|EFS62174.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA2] gi|313826807|gb|EFS64521.1| tRNA adenylyltransferase [Propionibacterium acnes HL063PA1] gi|314926209|gb|EFS90040.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA3] gi|314961597|gb|EFT05698.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA2] gi|314979986|gb|EFT24080.1| tRNA adenylyltransferase [Propionibacterium acnes HL072PA2] gi|315083014|gb|EFT54990.1| tRNA adenylyltransferase [Propionibacterium acnes HL027PA2] gi|315086547|gb|EFT58523.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA3] gi|315087950|gb|EFT59926.1| tRNA adenylyltransferase [Propionibacterium acnes HL072PA1] gi|327334060|gb|EGE75775.1| tRNA adenylyltransferase [Propionibacterium acnes HL096PA3] gi|327444535|gb|EGE91189.1| tRNA adenylyltransferase [Propionibacterium acnes HL013PA2] gi|328758040|gb|EGF71656.1| tRNA adenylyltransferase [Propionibacterium acnes HL020PA1] gi|332676693|gb|AEE73509.1| CCA-adding enzyme [Propionibacterium acnes 266] Length = 507 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ K D +RRDFT+NA+ + D GL D+ + Sbjct: 129 VTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 248 LSKTLLTDHPREGL 261 >gi|313771128|gb|EFS37094.1| tRNA adenylyltransferase [Propionibacterium acnes HL074PA1] gi|313811705|gb|EFS49419.1| tRNA adenylyltransferase [Propionibacterium acnes HL083PA1] gi|313832472|gb|EFS70186.1| tRNA adenylyltransferase [Propionibacterium acnes HL007PA1] gi|313832699|gb|EFS70413.1| tRNA adenylyltransferase [Propionibacterium acnes HL056PA1] gi|314969145|gb|EFT13243.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA1] gi|314975136|gb|EFT19231.1| tRNA adenylyltransferase [Propionibacterium acnes HL053PA1] gi|314977547|gb|EFT21642.1| tRNA adenylyltransferase [Propionibacterium acnes HL045PA1] gi|314985106|gb|EFT29198.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA1] gi|315096968|gb|EFT68944.1| tRNA adenylyltransferase [Propionibacterium acnes HL038PA1] gi|315107385|gb|EFT79361.1| tRNA adenylyltransferase [Propionibacterium acnes HL030PA1] gi|327332438|gb|EGE74173.1| tRNA adenylyltransferase [Propionibacterium acnes HL096PA2] gi|327446787|gb|EGE93441.1| tRNA adenylyltransferase [Propionibacterium acnes HL043PA2] gi|327448772|gb|EGE95426.1| tRNA adenylyltransferase [Propionibacterium acnes HL043PA1] gi|328759834|gb|EGF73424.1| tRNA adenylyltransferase [Propionibacterium acnes HL099PA1] Length = 507 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ K D +RRDFT+NA+ + D GL D+ + Sbjct: 129 VTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 248 LSKTLLTDHPREGL 261 >gi|71891853|ref|YP_277582.1| tRNA CCA-pyrophosphorylase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641186|sp|Q493X4|CCA_BLOPB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|71795959|gb|AAZ40710.1| tRNA nucleotidyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 408 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 10/214 (4%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L VQ+ D + P ++ I + K P + + + + Sbjct: 5 LVGGAVRDALLKLPVQEKDWVVVGSSPQEMLNIGYEQVGKDFPVFLHPESHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + + D RRD TINA+ D G +ID G D++ R Sbjct: 63 --TERKSGQGYTGFICHTAPSITIEEDLYRRDLTINAMAYDSHGNLIDPYHGQRDIKLRL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKILSSERIWS 207 ++ + H ED LR+LR RF A + N I + L+ + L LS ERIW+ Sbjct: 121 LRHVSHTFH---EDPLRVLRVARFAARFAHMNFAIAPETLILMKQMIHELLSLSPERIWT 177 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E K L NP + + G K +F ++ + Sbjct: 178 ETKKALITDNPQVYFTVLRHCGALKILFPELDAL 211 >gi|313814283|gb|EFS51997.1| tRNA adenylyltransferase [Propionibacterium acnes HL025PA1] Length = 507 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ K D +RRDFT+NA+ + D GL D+ + Sbjct: 129 VTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 248 LSKTLLTDHPREGL 261 >gi|228984715|ref|ZP_04144887.1| CCA-adding enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774913|gb|EEM23307.1| CCA-adding enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 347 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 9 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 68 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++GK++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 69 MTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 120 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + + + +F + +L + E Sbjct: 121 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSE 180 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 181 ERLLKATQ 188 >gi|150008663|ref|YP_001303406.1| tRNA nucleotidyltransferase [Parabacteroides distasonis ATCC 8503] gi|256841303|ref|ZP_05546810.1| tRNA adenylyltransferase [Parabacteroides sp. D13] gi|262383540|ref|ZP_06076676.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_33B] gi|301311477|ref|ZP_07217404.1| polyA polymerase family protein [Bacteroides sp. 20_3] gi|149937087|gb|ABR43784.1| tRNA nucleotidyltransferase [Parabacteroides distasonis ATCC 8503] gi|256737146|gb|EEU50473.1| tRNA adenylyltransferase [Parabacteroides sp. D13] gi|262294438|gb|EEY82370.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_33B] gi|300830563|gb|EFK61206.1| polyA polymerase family protein [Bacteroides sp. 20_3] Length = 476 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 11/196 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++GG VRD +N +DID+ L RV + + Y + ++GT ++ Sbjct: 33 VIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGRGAY--LSVFKNFGTAQVKAGD 90 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 + R + + VV + D RRDFTINAL ++ G+++D GGL Sbjct: 91 LELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALALCLNKERYGELVDPFGGL 150 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 D+ TI+ D +D LR++R RF G ID D A I+ ++ + I+S Sbjct: 151 EDMDELTIRTPLDPDVTFSDDPLRMMRAVRFATQLG-FFIDPDTFDAIIRNRERISIISK 209 Query: 203 ERIWSEINKLLEAKNP 218 ERI E+NK++ + P Sbjct: 210 ERIVDELNKIVLSPKP 225 >gi|168238165|ref|ZP_02663223.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736807|ref|YP_002116161.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226702083|sp|B4TVT8|CCA_SALSV RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|194712309|gb|ACF91530.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289027|gb|EDY28398.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 413 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLSLMRDMTAAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E L +NP + + G + +F ++ Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|229514072|ref|ZP_04403534.1| tRNA nucleotidyltransferase [Vibrio cholerae TMA 21] gi|229349253|gb|EEO14210.1| tRNA nucleotidyltransferase [Vibrio cholerae TMA 21] Length = 403 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTHHP 190 >gi|204928349|ref|ZP_03219549.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322671|gb|EDZ07868.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 413 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFTARYAHLSFRIADETLSLMRDMTAAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E L +NP + + G + +F ++ Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|559391|emb|CAA57198.1| unnamed protein product [Acidaminococcus fermentans DSM 20731] Length = 256 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162 R ++V + + + D RRDFTINAL DQ+G + D GL+DLR R ++ +GD R E Sbjct: 16 RPSEVWYCKTLEEDLSRRDFTINALAVDQEGHITDCFHGLDDLRGRVLRTVGDPDRRFSE 75 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 D LR+ R RF G D L A + + + LS ER+ +E+NKLL + Sbjct: 76 DALRMFRACRFVGQLGFAP-DPAILPAIGRNLQKVPGLSLERVRTELNKLLMGTYAGEGM 134 Query: 223 VHMYNGGIFKE 233 M G+ E Sbjct: 135 DLMVKSGLAAE 145 >gi|326563825|gb|EGE14076.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 46P47B1] gi|326563929|gb|EGE14179.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 12P80B1] Length = 388 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 145/366 (39%), Gaps = 69/366 (18%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV------IPTSISYGTIKIIC 84 +VGGAVRD+++ L + D D +V+ + V P + + + I Sbjct: 5 LVGGAVRDAVLGLPITDKDFMVVGATPQVLLDLGFIQVGVDFPVFLHPKTQAEYALARIE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---------QQGKV 135 RK T + R + D +RRD TINAL + GKV Sbjct: 65 RKSGVGHTAFQVHADPSVR---------LEEDLIRRDLTINALAIEVKGLFDETPMTGKV 115 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI---DSDGLVASIK 192 ID+ GGL D++NRT++ + A ED LR+LR RFFA + DS + Sbjct: 116 IDFYGGLTDIQNRTLRHVSPA---FSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQDI 172 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 AK G + LS ER++SE K + I ++ LD+ L L+Q Sbjct: 173 AKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQ--------LDILPFILPTLAQHFN 224 Query: 252 AEQVFEWKIDSLL-----------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Q + L F +L+S K + + + P+ IR F+ +F Sbjct: 225 TPQNRQRTFTRLALACTLNLPIFSYFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTF-- 282 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 +F+ +++P I L L H+D+ ++Q L D H + Sbjct: 283 NHFHDTFIALPNISG--------------NALLELLERTQAHKDSTKLIQ-LYDACHAYQ 327 Query: 361 --PLFP 364 PL+P Sbjct: 328 GSPLYP 333 >gi|307719260|ref|YP_003874792.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192] gi|306532985|gb|ADN02519.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192] Length = 364 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 14/205 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + ++ L K + +VGGAVRD L+ +D DI T P R+ R+F R VI Sbjct: 36 DHHALMVIRRLRKAGHAAYVVGGAVRDLLLGKHPKDFDIVTCATPGRIKRLFPYAR--VI 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + +++Y ++TT RS D Y + + D+ RRDFT+NALY D Sbjct: 94 GRRFRLVHV-YVTKEEYVEVTTFRSARADDPNAYGSI------EEDAFRRDFTVNALYYD 146 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++D+V G +R R + I ED +R+LR ++ A E + + LV Sbjct: 147 PFSEEILDFVDGFTHVRERRLVPIIPLDRIFEEDPVRMLRAVKYHARM-ELEMPKE-LVR 204 Query: 190 SIKAKK-GLKILSSERIWSEINKLL 213 I+ L+ +S+ R+ EI K+L Sbjct: 205 KIRDDAWRLEEVSASRLTEEIYKIL 229 >gi|229155201|ref|ZP_04283313.1| CCA-adding enzyme [Bacillus cereus ATCC 4342] gi|228628328|gb|EEK85043.1| CCA-adding enzyme [Bacillus cereus ATCC 4342] Length = 347 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 9 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 68 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++GK++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 69 MTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 120 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + + + +F + +L + E Sbjct: 121 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSE 180 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 181 ERLLKATQ 188 >gi|213404356|ref|XP_002172950.1| tRNA nucleotidyltransferase [Schizosaccharomyces japonicus yFS275] gi|212000997|gb|EEB06657.1| tRNA nucleotidyltransferase [Schizosaccharomyces japonicus yFS275] Length = 487 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 51/302 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP--DRVMRIFSKTRYKVIPTSISYGTI--KIICRK 86 + GG VRD L+ DID+ + D + I R + T + ++ K++ Sbjct: 38 LAGGWVRDKLLGCQSNDIDVTLKDISGQDFALAIVEFVRSQEATTLVPADSVLGKLVTNP 97 Query: 87 KY---------------FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130 + D +LR++ D VV D+LRRDFT+N+L+ + Sbjct: 98 EQSQHLETATMGLYGLDIDFVSLRAETYPDSSRIPVVTPGTVLTDALRRDFTVNSLFYNV 157 Query: 131 QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLV 188 + ++ D G GL DL +R++ DA ++D LRILR RF + + N D Sbjct: 158 RTDEIEDITGRGLKDLASRSLVTPVDAVASFIDDPLRILRGIRFASRF---NFTLHDTFF 214 Query: 189 ASIKAKKGLKI----LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +I+ K L + LS ERI E++K+L + NP A+ +Y+ GI + LD E + + Sbjct: 215 NAIRHPKVLDVFFIKLSKERIGEELSKMLNSTNPEVAVGMLYDTGI-AALILD--EFTPE 271 Query: 245 QLSQV----IEAEQVFEWKIDSLLR--------------FIVLISWQDKKSILSMAKKFS 286 Q QV + A Q + D+ + F L+ W+++K +L K+ Sbjct: 272 QYKQVQRALVAARQAVNYFSDASTQPSPLSSTGDFVVWLFATLVPWRNEK-MLEKKKEVY 330 Query: 287 LP 288 +P Sbjct: 331 VP 332 >gi|229172273|ref|ZP_04299837.1| CCA-adding enzyme [Bacillus cereus MM3] gi|228611261|gb|EEK68519.1| CCA-adding enzyme [Bacillus cereus MM3] Length = 346 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 26/221 (11%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++GK++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 68 MTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIF---------K 232 +K K+ ++ ++ ERI E KLL + + + +F + Sbjct: 120 LEMKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKLFSHLPYLQMSE 179 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ 273 E L + + D IEA F + I + L W+ Sbjct: 180 ERLLKAMQYNWDSFETDIEAWAFFLYCIGEEHPSVFLRQWK 220 >gi|326571558|gb|EGE21573.1| tRNA nucleotidyltransferase [Moraxella catarrhalis BC7] Length = 389 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 128/313 (40%), Gaps = 52/313 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV------IPTSISYGTIKIIC 84 +VGGAVRD+++ L + D D +V+ + V P + + + I Sbjct: 5 LVGGAVRDAVLGLPITDKDFMVVGAAPQVLLDLGFIQVGVDFPVFLHPKTQAEYALARIE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---------QQGKV 135 RK T + R + D +RRD TINAL + GKV Sbjct: 65 RKSGVGHTAFQVHADPSVR---------LEEDLIRRDLTINALAIEVKGLFNETPMTGKV 115 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI---DSDGLVASIK 192 ID+ GGL D++NRT++ + A ED LR+LR RFFA + DS + Sbjct: 116 IDFYGGLTDIQNRTLRHVSPA---FSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQDI 172 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 AK G + LS ER++SE K + I ++ LD+ L L+Q Sbjct: 173 AKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQ--------LDILPFILPTLAQHFN 224 Query: 252 AEQVFEWKIDSLL-----------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Q + L F +L+S K + + + P+ IR F+ +F Sbjct: 225 TPQNRQRTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTF-- 282 Query: 301 CNFNQKTLSIPEI 313 +F+ +++P I Sbjct: 283 NHFHDTFIALPNI 295 >gi|169795274|ref|YP_001713067.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AYE] gi|184158861|ref|YP_001847200.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii ACICU] gi|213158062|ref|YP_002320113.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AB0057] gi|215482807|ref|YP_002325010.1| Multifunctional CCA protein [Acinetobacter baumannii AB307-0294] gi|239502472|ref|ZP_04661782.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AB900] gi|301346881|ref|ZP_07227622.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AB056] gi|301510426|ref|ZP_07235663.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AB058] gi|301596783|ref|ZP_07241791.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AB059] gi|332850381|ref|ZP_08432701.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6013150] gi|332871807|ref|ZP_08440242.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6013113] gi|332875289|ref|ZP_08443121.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6014059] gi|226702030|sp|B0VBE4|CCA_ACIBY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702123|sp|B7GZN3|CCA_ACIB3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702124|sp|B7I3L8|CCA_ACIB5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702125|sp|B2HV23|CCA_ACIBC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|169148201|emb|CAM86064.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AYE] gi|183210455|gb|ACC57853.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii ACICU] gi|213057222|gb|ACJ42124.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AB0057] gi|213988422|gb|ACJ58721.1| Multifunctional CCA protein [Acinetobacter baumannii AB307-0294] gi|322507763|gb|ADX03217.1| cca [Acinetobacter baumannii 1656-2] gi|323518773|gb|ADX93154.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii TCDC-AB0715] gi|332730652|gb|EGJ61963.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6013150] gi|332731215|gb|EGJ62514.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6013113] gi|332736546|gb|EGJ67541.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6014059] Length = 412 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDYLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ GK+ D GG NDL Sbjct: 60 LARTERKS--GQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQNDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+ ++ + +A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELDALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E ++ L + + + G K +F ++ Sbjct: 175 ERVWKETSRALMENHADIYFQTLRDCGALKHLFPEI 210 >gi|238759902|ref|ZP_04621057.1| Poly(A) polymerase [Yersinia aldovae ATCC 35236] gi|238701886|gb|EEP94448.1| Poly(A) polymerase [Yersinia aldovae ATCC 35236] Length = 448 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 21/238 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 27 NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL----V 82 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 83 GRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQ 142 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+LR RF A Sbjct: 143 RRDFTINSLYYGISDFALRDYTGGLRDLKAGIIRLIGSPETRYREDPVRMLRAVRFAAKL 202 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + + + L+ + R++ E KLL++ + + +F+ +F Sbjct: 203 -DMALSPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 259 >gi|153214504|ref|ZP_01949413.1| tRNA nucleotidyltransferase [Vibrio cholerae 1587] gi|124115306|gb|EAY34126.1| tRNA nucleotidyltransferase [Vibrio cholerae 1587] Length = 403 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTHHP 190 >gi|304387497|ref|ZP_07369686.1| multifunctional CCA protein [Neisseria meningitidis ATCC 13091] gi|304338384|gb|EFM04505.1| multifunctional CCA protein [Neisseria meningitidis ATCC 13091] Length = 417 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + A Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIK---LMRQMVA 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E+ K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|54307652|ref|YP_128672.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Photobacterium profundum SS9] gi|73619818|sp|Q6LV05|CCA_PHOPR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|46912075|emb|CAG18870.1| putative tRNA nucleotidyltransferase [Photobacterium profundum SS9] Length = 411 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 30/260 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V D D + P++++ + P + T +++Y Sbjct: 5 LVGGAVRDALLGLKVVDKDWMVVGATPEQMLAQGYEQVGSDFPVFLHPKT-----KQEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + ++ + D +RRD TINA+ ++ G++ID G DL Sbjct: 60 LARTERKS--GKGYTGFICYSAPDVTLEQDLMRRDLTINAIAQEKDGRLIDPYNGQQDLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 N+ ++ + A +ED LR+LR RF FAH G ++ L+ + L+ L+ Sbjct: 118 NKILRHVSPA---FVEDPLRVLRVARFSARFAHLGFTIAPETIALMQEMVVAGELEALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ-----------VI 250 ER+W E K L +NP + + G K + ++ + + Q +Q ++ Sbjct: 175 ERVWKEWEKSLSTENPEVFLTVLRQCGALKVVMPEIDALFGVPQPAQWHPEIDCGIHTLM 234 Query: 251 EAEQVFEWKIDSLLRFIVLI 270 A+Q E + ++RF + Sbjct: 235 VAKQAAELSPNKVIRFAAQV 254 >gi|298376033|ref|ZP_06985989.1| polyA polymerase family protein [Bacteroides sp. 3_1_19] gi|298267070|gb|EFI08727.1| polyA polymerase family protein [Bacteroides sp. 3_1_19] Length = 476 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 11/196 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++GG VRD +N +DID+ L RV + + Y + ++GT ++ Sbjct: 33 VIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGRGAY--LSVFKNFGTAQVKAGD 90 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 + R + + VV + D RRDFTINAL ++ G+++D GGL Sbjct: 91 LELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALALCLNKERYGELVDPFGGL 150 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 D+ TI+ D +D LR++R RF G ID D A I+ ++ + I+S Sbjct: 151 EDMDELTIRTPLDPDITFSDDPLRMMRAVRFATQLG-FFIDPDTFDAIIRNRERISIISK 209 Query: 203 ERIWSEINKLLEAKNP 218 ERI E+NK++ + P Sbjct: 210 ERIVDELNKIVLSPKP 225 >gi|332535564|ref|ZP_08411337.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505] gi|332035021|gb|EGI71540.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505] Length = 493 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 34/250 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I +L L G + +VGG +RD L+ +D D+ T PD+V ++F R Sbjct: 79 PNAIKVLYRLKDGGYDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFRNCRL---- 134 Query: 73 TSISYGTIKIICRKKYFDITTLR------------SDLITDGRYAKVVFTRDWKADSLRR 120 + I+ ++ ++ T+R S +G+ + + D+ RR Sbjct: 135 IGRRFRLAHIVFGREIIEVATMRGHHEAQEDKNQISQSSNEGQLLRDNVFGSIEEDAERR 194 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF------ 173 DF+INALY + + DY GL ++ + I+ IGD R ED +R+LR RF Sbjct: 195 DFSINALYYSIKDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKLDM 254 Query: 174 -FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL-LEAKNPLNAIVHMYNGGIF 231 A EK I +AS+ L + R++ EI KL L K N ++ + G+F Sbjct: 255 SIAPKSEKPISE---LASL-----LDNIPPARLFEEILKLFLNGKAEANFLM-LRKYGLF 305 Query: 232 KEIFLDVQEI 241 + +F ++ +I Sbjct: 306 RSLFPELDKI 315 >gi|292491190|ref|YP_003526629.1| poly(A) polymerase [Nitrosococcus halophilus Nc4] gi|291579785|gb|ADE14242.1| poly(A) polymerase [Nitrosococcus halophilus Nc4] Length = 402 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 12/202 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L K + +VGG VRD L+ +D D+ T P+++ +F R + Sbjct: 1 MLYRLKKAGFSAYLVGGCVRDLLLGHEPKDFDVTTDARPEQIRDLFRSCRL----VGRRF 56 Query: 78 GTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + + ++ T R L +GR + D+ RRDF++NALY + + Sbjct: 57 RLAHVRFGRDIIEVATFRGPPGKGLSENGRIVSDNVYGTLEQDAWRRDFSVNALYYNIRD 116 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASI 191 V+DY GG+ DL+ ++ IGD R ED +R+LR RF A G + +S+ + + Sbjct: 117 FSVVDYTGGMEDLKAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLGFTFHPESEKPIWDL 176 Query: 192 KAKKGLKILSSERIWSEINKLL 213 L+ + S R++ E+ KL Sbjct: 177 AP--SLQEIPSARLFEEVLKLF 196 >gi|161870084|ref|YP_001599254.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria meningitidis 053442] gi|189081874|sp|A9LZC1|CCA_NEIM0 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|161595637|gb|ABX73297.1| tRNA nucleotidyltransferase [Neisseria meningitidis 053442] Length = 417 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDAGGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E+ K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|94499961|ref|ZP_01306496.1| tRNA nucleotidyltransferase [Oceanobacter sp. RED65] gi|94427819|gb|EAT12794.1| tRNA nucleotidyltransferase [Oceanobacter sp. RED65] Length = 419 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 20/200 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+N++++D D + P+ + YK + + K Sbjct: 6 KTYLVGGAVRDQLLNIAIKDRDWVVVGSTPEDMQ----GKGYKQVGADFPV----FLHPK 57 Query: 87 KYFDITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V FT D + D +RRD TINA+ D+ G++ID G Sbjct: 58 TQEEYALARTERKSGKGYQGFTVDFTSDVTLEEDLIRRDLTINAMAQDESGEIIDPFNGR 117 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLK 198 D++++ ++ + A ED LR+LR RF F H G D L+ + L Sbjct: 118 LDIKDKVLRHVSPA---FSEDPLRVLRVARFAARFHHLGFTVADETLSLMTELSDSGELA 174 Query: 199 ILSSERIWSEINKLLEAKNP 218 L++ER+W E + L K+P Sbjct: 175 TLTAERVWVETQRALSEKSP 194 >gi|329957804|ref|ZP_08298279.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacteroides clarus YIT 12056] gi|328522681|gb|EGF49790.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacteroides clarus YIT 12056] Length = 479 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + +K + S+ ++GT ++ Sbjct: 39 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRLGRGAHLSVFKNFGTAQLKYHGTE 98 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + T +V + D RRDFTINAL ++ G++ D GG+ D Sbjct: 99 VEFVGARKESYTHDSRKPIVEDGSLEDDQNRRDFTINALAVCLNRERYGELADPFGGMAD 158 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 +R +TI+ D +D LR++R RF ID D + + K+ + I+S ER Sbjct: 159 MREKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNKERISIISRER 217 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L + P + + G+ + IF ++ Sbjct: 218 IADELNKILLSPVPSKGFIDLDRSGLLQLIFPEL 251 >gi|320354996|ref|YP_004196335.1| polunucleotide adenylyltransferase region [Desulfobulbus propionicus DSM 2032] gi|320123498|gb|ADW19044.1| Polynucleotide adenylyltransferase region [Desulfobulbus propionicus DSM 2032] Length = 901 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 170/386 (44%), Gaps = 45/386 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII-CRKKYF 89 + GG VRD L+++ DIDI R + ++ R+ V+ +GT +I + Sbjct: 501 VAGGFVRDLLLHVRNTDIDIVIEGDGIRFAKTLAEQRHGVVHPHEKFGTATVIFPDQSRV 560 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 D+ T R + V K D RRDFTINA L ++ G ++DY NDL Sbjct: 561 DVATARLEYYEHPAALPTVEHSSIKLDLYRRDFTINAMAIHLNPERFGTLVDYFNCQNDL 620 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID------SDGLVASIKAKKGLKI 199 + R I+ + + +ED RI R RF E +D ++ L+ + + Sbjct: 621 KERRIQVLHNLS--FVEDPTRIFRAIRF-----EGRLDFTITRHAEKLIKNTVQMNLFEK 673 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQ--LSQVIEAEQVF 256 + R + E+ +L +P+ A+ M +F ++ D++ + +D+ L + +A Q Sbjct: 674 VEEPRFFHELKLILSEDDPIPALRRMAQFKLFPFLWPDLRPNLKVDRRFLHTLTQANQAI 733 Query: 257 EW--------KIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 W ++++ ++ + ++S K ++S +F LP + R LI QKT Sbjct: 734 SWFKLLYLPDRVETWMVYLLAIMSRSRTKELISFCHRFDLPPKQRKKLI-------QQKT 786 Query: 308 LS---IPEIKKLFYLYGDKV--MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + E++K +L + ++ +L I L+ + + +I Q +S + + + Sbjct: 787 DAERIAQEMQKRPFLKPSETYWLLGELDIEGLLYLMTIARKR--YIQQAVSLYVTTLRKV 844 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVH 387 PL G D +K G PG + I H Sbjct: 845 VPLVGGDELKTMGYIPGPQFRAIHNH 870 >gi|329119874|ref|ZP_08248548.1| multifunctional CCA protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464030|gb|EGF10341.1| multifunctional CCA protein [Neisseria bacilliformis ATCC BAA-1200] Length = 412 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 33/222 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDI------ATTILPD---RVMRIFSKTRYKVIPTSISYGTIK 81 +VGGAVRD+L+ L V+D D A T+L V R F + + + + Sbjct: 5 LVGGAVRDALLGLEVKDRDWVVVGSDARTLLSQGYKPVGRDFPVFLHPLTREEFALARTE 64 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 K Y + + +T + D +RRD TINA+ D G++ID GG Sbjct: 65 RKTGKGYSGFSCYAAPDVT------------LEQDLIRRDLTINAMAQDADGRIIDPFGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-----EKNIDSDGLVASIKAKKG 196 DLR + ++ + A ED +RILR RF A YG E G+V S +A+ Sbjct: 113 QADLRGKILRHVSPA---FAEDPVRILRTARFAARYGFAVAPETMSLMRGMVESGEARA- 168 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L ER+W E+ + L +P I + G K +V Sbjct: 169 ---LVPERVWKELARGLMEDHPERMIEVLRECGALKVALPEV 207 >gi|229521274|ref|ZP_04410694.1| tRNA nucleotidyltransferase [Vibrio cholerae TM 11079-80] gi|229341806|gb|EEO06808.1| tRNA nucleotidyltransferase [Vibrio cholerae TM 11079-80] Length = 403 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTHHP 190 >gi|326575162|gb|EGE25090.1| tRNA nucleotidyltransferase [Moraxella catarrhalis CO72] Length = 389 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 128/313 (40%), Gaps = 52/313 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV------IPTSISYGTIKIIC 84 +VGGAVRD+++ L + D D +V+ + V P + + + I Sbjct: 5 LVGGAVRDAVLGLPITDKDFMVVGATPQVLLDLGFIQVGVDFPVFLHPKTQAEYALARIE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---------QQGKV 135 RK T + R + D +RRD TINAL + GKV Sbjct: 65 RKSGVGHTAFQVHADPSVR---------LEEDLIRRDLTINALAIEVKGLFDETPMTGKV 115 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI---DSDGLVASIK 192 ID+ GGL D++NRT++ + A ED LR+LR RFFA + DS + Sbjct: 116 IDFYGGLTDIQNRTLRHVSPA---FSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQDI 172 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 AK G + LS ER++SE K + I ++ LD+ L L+Q Sbjct: 173 AKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQ--------LDILPFILPTLAQHFN 224 Query: 252 AEQVFEWKIDSLL-----------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Q + L F +L+S K + + + P+ IR F+ +F Sbjct: 225 TPQNRQRTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTF-- 282 Query: 301 CNFNQKTLSIPEI 313 +F+ +++P I Sbjct: 283 NHFHDTFIALPNI 295 >gi|330828251|ref|YP_004391203.1| multifunctional Cca protein [Aeromonas veronii B565] gi|328803387|gb|AEB48586.1| Multifunctional Cca protein [Aeromonas veronii B565] Length = 387 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 7/127 (5%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D LRRD TINA+ D QG++ D GG+ DL R ++ + A ED LRILR RF A Sbjct: 62 DLLRRDLTINAIAEDDQGQLHDPYGGIKDLEKRLLRHVSPA---FAEDPLRILRVARFAA 118 Query: 176 HYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 + + ++ L++ + A L L+ ER+W E+ K+L P I + G Sbjct: 119 RFHAQGFTIAPETLALMSEMTAAGELAHLTPERVWKELEKVLLGPTPQIFIEVLRQCGAL 178 Query: 232 KEIFLDV 238 K +F ++ Sbjct: 179 KALFPEI 185 >gi|301093284|ref|XP_002997490.1| tRNA nucleotidyltransferase, putative [Phytophthora infestans T30-4] gi|262110632|gb|EEY68684.1| tRNA nucleotidyltransferase, putative [Phytophthora infestans T30-4] Length = 588 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 39/232 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICRK-K 87 + GG VRD L +DIDIA ++ + R +K R + +P S S G +K K K Sbjct: 80 VAGGWVRDKLRGAESEDIDIALDNLMGAKFARYITKFQRDRKLPPS-SVGVVKANSDKSK 138 Query: 88 YFDITT------------LRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 + ++ T LR++ T D R +V F + D+ RRD TINAL+ + + Sbjct: 139 HLEVATVTIEGSTVDLVHLRAEEYTPDSRVPEVTFATP-EDDASRRDLTINALFYNLHTR 197 Query: 135 -VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--------EKNIDS 184 V D+ G G+NDL+N I+ + L+D LR+LR RF +G ++ Sbjct: 198 HVEDFTGKGVNDLKNGVIRTPREPVQTFLDDPLRVLRALRFACEFGFTLDPALETAVLEQ 257 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 +V +++ K +S ERI E+ K+L +P+ A G+ ++ +L Sbjct: 258 REIVGAMRRK-----VSRERIGIEVRKMLSGNDPVRAF------GLLRKFYL 298 >gi|307259243|ref|ZP_07540973.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306866910|gb|EFM98768.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 436 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P++++ + P + T +++Y Sbjct: 30 LVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEYA 84 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 R + + +G + D +RRD TINA+ D G++ D GG DL NR Sbjct: 85 LARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGKQDLANR 144 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A + ++ L+ + A L L++ER Sbjct: 145 LLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELAHLTAER 201 Query: 205 IWSEINKLLEAKNP 218 +W E K NP Sbjct: 202 VWLETQKAFATDNP 215 >gi|238761613|ref|ZP_04622588.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638] gi|238700127|gb|EEP92869.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638] Length = 483 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 20/178 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 62 NALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRNCRL----V 117 Query: 74 SISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRD-----WKADSL 118 + ++ + ++ T R SD + + + RD + D+ Sbjct: 118 GRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQ 177 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+LR RF A Sbjct: 178 RRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAA 235 >gi|189502253|ref|YP_001957970.1| hypothetical protein Aasi_0872 [Candidatus Amoebophilus asiaticus 5a2] gi|189497694|gb|ACE06241.1| hypothetical protein Aasi_0872 [Candidatus Amoebophilus asiaticus 5a2] Length = 474 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 7/214 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICR 85 ++C+VGG VRD + +DIDI + + ++ + I I ++GT + + Sbjct: 26 ETCVVGGFVRDLFLQRPSKDIDIVCVGNGIELAQAVAQELGEDIVVHIFKTFGTAMLRWQ 85 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + R + + V D LRRDFTIN L Q G++ID +GG Sbjct: 86 DNEVEFVGARKESYSRDSRNPEVTQGTLVDDQLRRDFTINTLAIRINKSQWGELIDDLGG 145 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 ++DL+ + IK D +D LR++R RF ID L++ + + +KI+S Sbjct: 146 VSDLQQKIIKTPLDPGITFSDDPLRMMRAIRFATQL-RFTIDEVTLMSIQQHAERIKIIS 204 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ERI E+NK++ A P +++ G+ K F Sbjct: 205 QERITEELNKIILADIPSKGFKLLFDTGLLKLFF 238 >gi|265756837|ref|ZP_06090825.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233623|gb|EEZ19243.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 500 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + + F K + S+ ++GT ++ Sbjct: 56 VVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGRGAHVSVFKNFGTAQVKYHDTE 115 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINA L + G+++D GL+D Sbjct: 116 VEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFNGLDD 175 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ RTI+ D +D LR++R RF ID A + K+ + I+S ER Sbjct: 176 LKERTIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDDTTFEALSRNKERIHIISKER 234 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L A P + + G+ IF ++ Sbjct: 235 IADELNKILLAPIPSKGFIELDRCGLLPLIFPEL 268 >gi|16761978|ref|NP_457595.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143465|ref|NP_806807.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213027244|ref|ZP_03341691.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161051|ref|ZP_03346761.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425623|ref|ZP_03358373.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581445|ref|ZP_03363271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213852379|ref|ZP_03381911.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827089|ref|ZP_06545878.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|73619842|sp|Q8Z3M9|CCA_SALTI RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|25288662|pir||AC0892 tRNA adenylyltransferase (EC 2.7.7.25) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504281|emb|CAD07729.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139099|gb|AAO70667.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 413 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P ++ + + P + T + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G +AD RRD TINAL D G++ID G DL R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGRRDLEARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A Y + ++ L+ + A L+ L+ ER+ Sbjct: 121 LRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLTLMREMTAAGELEHLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E L +NP + + G + +F ++ Sbjct: 178 WKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|326560938|gb|EGE11303.1| tRNA nucleotidyltransferase [Moraxella catarrhalis 7169] gi|326569836|gb|EGE19886.1| tRNA nucleotidyltransferase [Moraxella catarrhalis BC8] Length = 389 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 128/313 (40%), Gaps = 52/313 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV------IPTSISYGTIKIIC 84 +VGGAVRD+++ L + D D +V+ + V P + + + I Sbjct: 5 LVGGAVRDAVLGLPITDKDFMVVGATPQVLLDLGFIQVGVDFPVFLHPKTQAEYALARIE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---------QQGKV 135 RK T + R + D +RRD TINAL + GKV Sbjct: 65 RKSGVGHTAFQVHADPSVR---------LEEDLIRRDLTINALAIEVKGLFDETPMTGKV 115 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI---DSDGLVASIK 192 ID+ GGL D++NRT++ + A ED LR+LR RFFA + DS + Sbjct: 116 IDFYGGLTDIQNRTLRHVSPA---FSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQDI 172 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 AK G + LS ER++SE K + I ++ LD+ L L+Q Sbjct: 173 AKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQ--------LDILPFILPTLAQHFN 224 Query: 252 AEQVFEWKIDSLL-----------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Q + L F +L+S K + + + P+ IR F+ +F Sbjct: 225 TPQNRQRTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTF-- 282 Query: 301 CNFNQKTLSIPEI 313 +F+ +++P I Sbjct: 283 NHFHDTFIALPNI 295 >gi|303253062|ref|ZP_07339213.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648094|gb|EFL78299.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 395 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P++++ + P + T +++Y Sbjct: 5 LVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 R + + +G + D +RRD TINA+ D G++ D GG DL NR Sbjct: 60 LARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGKQDLANR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A + ++ L+ + A L L++ER Sbjct: 120 LLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELAHLTAER 176 Query: 205 IWSEINKLLEAKNP 218 +W E K NP Sbjct: 177 VWLETQKAFATDNP 190 >gi|81299602|ref|YP_399810.1| polyA polymerase [Synechococcus elongatus PCC 7942] gi|81168483|gb|ABB56823.1| polyA polymerase [Synechococcus elongatus PCC 7942] Length = 412 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 41/246 (16%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +C+VGGAVRD+L+ +D+ V+P + T + + R+ Sbjct: 25 ACLVGGAVRDALLGRLSDPLDLDW-----------------VVPNG-AVETARSLARQHQ 66 Query: 89 FDITTLRSDLITDGRYAKVVF---TRDW--------KADSLRRDFTINALYAD-QQGKVI 136 L +D + A+VVF T D+ + D RRDFTINA+ D Q+ VI Sbjct: 67 AGFVLLDADR----QIARVVFADMTVDFAQQEGDRLEQDLRRRDFTINAIAYDWQRQTVI 122 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D +GG DL ++ + A +++D LR+LR +R A +I+ + A + Sbjct: 123 DPLGGQADLEQGLLRMV--APENLVDDPLRLLRAYRQAAQL-SFSIEPETAAAIAQLAPL 179 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS---QVIEAE 253 L ++ ERIW+E+ +LL P +V G+ F + + L+ Q ++A Sbjct: 180 LPQVAGERIWAELQRLLNVPPPHPVLVEAIASGLLAPWFPEATPECMSTLADHWQQLQA- 238 Query: 254 QVFEWK 259 Q EW Sbjct: 239 QAPEWP 244 >gi|297539582|ref|YP_003675351.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylotenera sp. 301] gi|297258929|gb|ADI30774.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylotenera sp. 301] Length = 402 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 35/267 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ LSV+D D + P+ + K K P + K + Sbjct: 5 LVGGAVRDELLGLSVKDKDYVVVGSTPEEMEAAGYKPVGKDFPV--------FLHPKTHD 56 Query: 90 DITTLRSDLITDGRY------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + R++ T Y A V T + D RRD TINA+ G++ID GL Sbjct: 57 EYALARTERKTAKGYKGFAVHASVDVT--LEEDLARRDLTINAIAKSVDGQLIDPYHGLA 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILS 201 D++++T++ + A ED +RILR R A + + ++ +++ L+ + + + L Sbjct: 115 DIQSKTLRHVSAA---FAEDPVRILRAARLSARFADFSVAPETNQLMQDMVSAGEVDALV 171 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L P + G K+I + LD+L V + Q ++D Sbjct: 172 AERVWQELAKGLMEAKPSRMFDVLRACGALKKIMPE-----LDKLWGVPQPPQ-HHPEVD 225 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLP 288 + + +++I + K+S FSLP Sbjct: 226 TGVHVMMVIDYAAKQS-------FSLP 245 >gi|302342303|ref|YP_003806832.1| poly(A) polymerase [Desulfarculus baarsii DSM 2075] gi|301638916|gb|ADK84238.1| poly(A) polymerase [Desulfarculus baarsii DSM 2075] Length = 425 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 15/209 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + +L L++ + +VGG VRD L+ +D D+ T P +V +F +R VI Sbjct: 33 DPDALKVLYRLHRAGFTAYLVGGGVRDLLLGKKPKDFDVGTDARPGQVRNLFRNSR--VI 90 Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + R K +++T R DL+ A F + D+LRRD TIN Sbjct: 91 GRRFRLVQV-FFQRNKIVEVSTFRRASDPDEDLVLQ---ANNTFGSPAE-DALRRDLTIN 145 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A++ + ++DYVGG++DL+ I+ +GD R D +R++R R A G + + S Sbjct: 146 AMFYNIADFSIVDYVGGMDDLKAGLIRAVGDPKIRFHRDPVRVMRAVRHAARTGFQ-LTS 204 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLL 213 + A + L + S RI E+ + L Sbjct: 205 ETRQAVEDFRCELAVCPSSRIRDELMRDL 233 >gi|145629073|ref|ZP_01784872.1| polyA polymerase [Haemophilus influenzae 22.1-21] gi|144978576|gb|EDJ88299.1| polyA polymerase [Haemophilus influenzae 22.1-21] Length = 292 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 27/180 (15%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + V Sbjct: 92 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV--- 148 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 149 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 202 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + Q + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 203 AARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMA 262 >gi|319789869|ref|YP_004151502.1| Polynucleotide adenylyltransferase region protein [Thermovibrio ammonificans HB-1] gi|317114371|gb|ADU96861.1| Polynucleotide adenylyltransferase region protein [Thermovibrio ammonificans HB-1] Length = 881 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 18/218 (8%) Query: 29 SCIVGGAVRDSLMNLSVQDIDI-----ATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 + +VGG VRD ++ DIDI A T + R+ +K + T + T +I Sbjct: 480 AYLVGGFVRDLVIGRKNFDIDIVVEGDAVTFSKEVAKRLGAK-----VHTFERFKTATLI 534 Query: 84 CRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDY 138 + D+ + R++L V T K D +RRDFTIN L + G++ID+ Sbjct: 535 FPEGLRIDLASARTELYRSPGALPEVDTAPLKKDLMRRDFTINTLAVKINPSEFGRLIDF 594 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL 197 GGL D++ R I+ + +ED RILR RF Y E ++ L+ +K Sbjct: 595 FGGLRDIKERKIRVLHSLS--FVEDPTRILRALRFATRYRFELGRHTERLLKMAVERKLF 652 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K + +RI+ E+ ++L +NPL + + G+ E+F Sbjct: 653 KTVEGQRIYHELKQILLEENPLRVFLKLDRYGVLAELF 690 >gi|298507269|gb|ADI85992.1| nucleic acid-independent polyadenylating polymerase [Geobacter sulfurreducens KN400] Length = 459 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 33/251 (13%) Query: 17 NILSLLNKGEDKSCI---VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 N L +L + D I VGG VRD L+ +D D+AT P+++ RIF R + Sbjct: 27 NALRVLYRLRDNGFIAYLVGGCVRDLLLGREPKDFDVATDATPNQIKRIFRNCRLVGRRF 86 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITD------GRYAK------------VVFT 110 ++ + I++ + + + D G A+ + Sbjct: 87 RLAHIHFTDEIIEVATFRALSPPEQGEGEPVADETGQRGGDEAERLRPPRHLVSDEGMVL 146 Query: 111 RD-----WKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 RD D+LRRDFT+NAL Y +IDY GG+ DL+ I+ IGD R ED Sbjct: 147 RDNVFGTPGEDALRRDFTVNALAYCIADFSIIDYAGGMEDLQRGMIRTIGDPRVRFTEDP 206 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 +R+LR RF A G ++ + A + + ++ R++ E+ KL + A Sbjct: 207 VRMLRAVRFAAVLG-FAVEEETWQAMLDLAPAITRATAPRLYEEMLKLFLSGEGERAYQL 265 Query: 225 MYNGGIFKEIF 235 + G+F +F Sbjct: 266 LRQTGLFAHLF 276 >gi|261401213|ref|ZP_05987338.1| multifunctional CCA protein [Neisseria lactamica ATCC 23970] gi|269208792|gb|EEZ75247.1| multifunctional CCA protein [Neisseria lactamica ATCC 23970] Length = 417 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 98/219 (44%), Gaps = 21/219 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV---IPTSISYGTIKIIC 84 ++ +VGGAVRD L+ L V+D D + M ++ + V P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTM--LAQGFWPVGKDFPVFLHPET----- 54 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVG 140 + + R++ T YA F D + D +RRD TINA+ D G +ID G Sbjct: 55 ---HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFG 111 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKI 199 G DL ++ + A ED +RILR RF A YG E ++ L+ + Sbjct: 112 GQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMKLMRQMVENGEADA 168 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E+ K L KNP I + G K + +V Sbjct: 169 LVAERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|150004215|ref|YP_001298959.1| putative polyA polymerase [Bacteroides vulgatus ATCC 8482] gi|149932639|gb|ABR39337.1| putative polyA polymerase [Bacteroides vulgatus ATCC 8482] Length = 472 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + + F + + S+ ++GT +I Sbjct: 28 VVGGYVRDIFLKRPSKDIDVVVVGSGIEMAQAFGRKLGRGARVSVFKNFGTAQIKYHDTE 87 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINA L + G+++D GL+D Sbjct: 88 VEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFNGLDD 147 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ RTI+ D +D LR++R RF ID A + K+ + I+S ER Sbjct: 148 LKERTIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDDTTFEALSRNKERIHIISKER 206 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L A P + + G+ IF ++ Sbjct: 207 IADELNKILLAPIPSKGFIELDRCGLLPLIFPEL 240 >gi|308389334|gb|ADO31654.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis alpha710] gi|325130312|gb|EGC53079.1| multifunctional CCA protein [Neisseria meningitidis OX99.30304] gi|325136273|gb|EGC58881.1| multifunctional CCA protein [Neisseria meningitidis M0579] Length = 417 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 33/228 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L +ER+W E K L KNP I + G K + +V + Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNAL 210 >gi|260556738|ref|ZP_05828956.1| LOW QUALITY PROTEIN: tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii ATCC 19606] gi|260409997|gb|EEX03297.1| LOW QUALITY PROTEIN: tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii ATCC 19606] Length = 412 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDYLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ GK+ D GG NDL Sbjct: 60 LARTERKS--GQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQNDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+ ++ + +A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELDALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E ++ L + + + G K +F ++ Sbjct: 175 ERVWKETSRALMENHADIYFQTLRDCGALKHLFPEI 210 >gi|326567321|gb|EGE17436.1| tRNA nucleotidyltransferase [Moraxella catarrhalis BC1] Length = 389 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 127/313 (40%), Gaps = 52/313 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV------IPTSISYGTIKIIC 84 +VGGAVRD ++ L + D D +V+ + V P + + + I Sbjct: 5 LVGGAVRDGVLGLPITDKDFMVVGATPQVLLDLGFIQVGVDFPVFLHPKTQAEYALARIE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---------QQGKV 135 RK T + R + D +RRD TINAL + GKV Sbjct: 65 RKSGVGHTAFQVHADPSVR---------LEEDLIRRDLTINALAIEVKGLFDETPMTGKV 115 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI---DSDGLVASIK 192 ID+ GGL D++NRT++ + A ED LR+LR RFFA + DS + Sbjct: 116 IDFYGGLTDIQNRTLRHVSPA---FSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQDI 172 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 AK G + LS ER++SE K + I ++ LD+ L L+Q Sbjct: 173 AKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQ--------LDILPFILPTLAQHFN 224 Query: 252 AEQVFEWKIDSLL-----------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Q + L F +L+S K + + + P+ IR F+ +F Sbjct: 225 TPQNRQRTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTF-- 282 Query: 301 CNFNQKTLSIPEI 313 +F+ +++P I Sbjct: 283 NHFHDTFIALPNI 295 >gi|238755491|ref|ZP_04616831.1| Phosphatase [Yersinia ruckeri ATCC 29473] gi|238706332|gb|EEP98709.1| Phosphatase [Yersinia ruckeri ATCC 29473] Length = 415 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+NL V + D + P++++ + K P + + R++Y Sbjct: 5 LVGGAVRDNLLNLPVTERDWVVVGATPEQLLSQGYQQVGKDFPV-----FLHPVSREEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D LRRD TINA+ G++ D G DL NR Sbjct: 60 LARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQHSDGELFDPYHGQQDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + A ED LR+LR RF A + ++ L+ + L L+ ER Sbjct: 120 ILRHVSAA---FAEDPLRVLRVARFAARFANLGFTIAPETQALMRQMADNGELSALTPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E K L +++P + + G +F ++ Sbjct: 177 VWKETEKALLSQSPQTYFQVLRDCGALAVLFPEI 210 >gi|229029317|ref|ZP_04185405.1| CCA-adding enzyme [Bacillus cereus AH1271] gi|228731976|gb|EEL82870.1| CCA-adding enzyme [Bacillus cereus AH1271] Length = 346 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++G+++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 68 MTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 +K K+ ++ ++ ERI E KLL + + + +F + +L + E Sbjct: 120 LEMKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKLFSHLPYLQMSE 179 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 180 ERLLKATQ 187 >gi|145590175|ref|YP_001156772.1| polynucleotide adenylyltransferase region [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048581|gb|ABP35208.1| Polynucleotide adenylyltransferase region [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 376 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 130/289 (44%), Gaps = 33/289 (11%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGA+RD+LM+L V DID + + + + V + F + K P + T + +Y Sbjct: 6 VGGAIRDTLMSLPVHDIDYVVVGSSVEEMVAKGF-RPVGKDFPVFLHPDT-----QAEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ------GKVIDYV 139 R++ T Y F D + D RRD TINA+ + G ++D Sbjct: 59 --ALARTERKTGKGYKGFHFYADPSVTLEQDLERRDLTINAMAQEVGLDGTWIGPILDPY 116 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--SIKAKKGL 197 G DL + + + DA ED LR+LR RF A + E ++ + ++A +I L Sbjct: 117 NGQEDLAAKVFRHVSDA---FAEDPLRLLRIARFAARFPEFSVADETMIALKAIVQSGEL 173 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV-- 255 LS+ERIW E+ + + A P++ + N G K FL +QL+Q + E++ Sbjct: 174 AALSAERIWQELARGMTAAKPMHMFQVLLNTGAAK-TFLPA--TLTNQLAQEVFREELIS 230 Query: 256 -FEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 +E + L R V + I S A +P E+R F F N Sbjct: 231 HYELVGNYLEERCAVTLMRLPSSEIRSWADCVRMPTEVRDFSEIFSELN 279 >gi|39998340|ref|NP_954291.1| polyA polymerase [Geobacter sulfurreducens PCA] gi|39985286|gb|AAR36641.1| polyA polymerase [Geobacter sulfurreducens PCA] Length = 455 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 33/251 (13%) Query: 17 NILSLLNKGEDKSCI---VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----Y 68 N L +L + D I VGG VRD L+ +D D+AT P+++ RIF R + Sbjct: 23 NALRVLYRLRDNGFIAYLVGGCVRDLLLGREPKDFDVATDATPNQIKRIFRNCRLVGRRF 82 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITD------GRYAK------------VVFT 110 ++ + I++ + + + D G A+ + Sbjct: 83 RLAHIHFTDEIIEVATFRALSPPEQGEGEPVADETGQRGGDEAERLRPPRHLVSDEGMVL 142 Query: 111 RD-----WKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 RD D+LRRDFT+NAL Y +IDY GG+ DL+ I+ IGD R ED Sbjct: 143 RDNVFGTPGEDALRRDFTVNALAYCIADFSIIDYAGGMEDLQRGMIRTIGDPRVRFTEDP 202 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 +R+LR RF A G ++ + A + + ++ R++ E+ KL + A Sbjct: 203 VRMLRAVRFAAVLG-FAVEEETWQAMLDLAPAITRATAPRLYEEMLKLFLSGEGERAYQL 261 Query: 225 MYNGGIFKEIF 235 + G+F +F Sbjct: 262 LRQTGLFAHLF 272 >gi|254884767|ref|ZP_05257477.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319644170|ref|ZP_07998695.1| polyA polymerase [Bacteroides sp. 3_1_40A] gi|254837560|gb|EET17869.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317384292|gb|EFV65263.1| polyA polymerase [Bacteroides sp. 3_1_40A] Length = 474 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + + F K + S+ ++GT ++ Sbjct: 30 VVGGYVRDIFLARPSKDIDVVVVGSGIEMAQTFGKKLGRGAHVSVFKNFGTAQVKYHDTE 89 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINA L + G+++D GL+D Sbjct: 90 VEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFNGLDD 149 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ RTI+ D +D LR++R RF ID A + K+ + I+S ER Sbjct: 150 LKERTIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDDTTFEALSRNKERIHIISKER 208 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L A P + + G+ IF ++ Sbjct: 209 IADELNKILLAPIPSKGFIELDRCGLLPLIFPEL 242 >gi|146309035|ref|YP_001189500.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas mendocina ymp] gi|166233871|sp|A4XZK2|CCA_PSEMY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|145577236|gb|ABP86768.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudomonas mendocina ymp] Length = 410 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V ++D + ++++ + + P + T + + Sbjct: 6 VGGAVRDRLLGRPVSEVDWVVVGASAEQMLELGYRPVGADFPVFLHPQTGE--------E 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D +RRD ++NA+ D+QGK+ID GG DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPEVTLEEDLIRRDLSVNAMAEDEQGKLIDPYGGQQDLA 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ GL+ + L L++ Sbjct: 118 ARILRHVSPA---FAEDPLRVLRVARFAARYAPLGFHVADETLGLMRQLAESGELAHLTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER W EI++ L P Sbjct: 175 ERSWKEISRALMEPRP 190 >gi|262190105|ref|ZP_06048394.1| tRNA nucleotidyltransferase [Vibrio cholerae CT 5369-93] gi|262034009|gb|EEY52460.1| tRNA nucleotidyltransferase [Vibrio cholerae CT 5369-93] Length = 403 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLLRRDLTINAMAQDGSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTHHP 190 >gi|229102239|ref|ZP_04232948.1| CCA-adding enzyme [Bacillus cereus Rock3-28] gi|228681140|gb|EEL35308.1| CCA-adding enzyme [Bacillus cereus Rock3-28] Length = 346 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++G+++D G ++ R I +G+A +R ED LR++R RF + + G Sbjct: 68 MTEEGEMVDLFAGQEAIQKREIVTVGNAANRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + + + +F + +L + E Sbjct: 120 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSE 179 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 180 ERLLKATQ 187 >gi|114330522|ref|YP_746744.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Nitrosomonas eutropha C91] gi|122314471|sp|Q0AIP2|CCA_NITEC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|114307536|gb|ABI58779.1| metal dependent phosphohydrolase [Nitrosomonas eutropha C91] Length = 412 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 15/192 (7%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGG+VRD L+ L V+D D + P+ ++R + K P + T ++Y Sbjct: 6 VGGSVRDELLGLPVKDQDYVVVGATPEDMIRQGYRPVGKDFPVFLHPET-----HEQYAL 60 Query: 91 ITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R I G ++ + D RRD TINA+ D+ G +ID GG+ DL+ Sbjct: 61 ARTERK--IARGYKGFAIYATPEVTLQEDLARRDLTINAIARDEAGNIIDPFGGIADLQA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERIW 206 ++ IG A +ED +R+LR RF A +G + ++ L+ I + L +ER+W Sbjct: 119 GILRHIGPA---FVEDPVRVLRVARFAARFGFQVAPETFELMKEIVHTGETEALVAERVW 175 Query: 207 SEINKLLEAKNP 218 EI L ++P Sbjct: 176 QEIAHGLMEQHP 187 >gi|325202065|gb|ADY97519.1| multifunctional CCA protein [Neisseria meningitidis M01-240149] gi|325208181|gb|ADZ03633.1| multifunctional CCA protein [Neisseria meningitidis NZ-05/33] Length = 417 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 97/225 (43%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|32033553|ref|ZP_00133880.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208391|ref|YP_001053616.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae L20] gi|190150244|ref|YP_001968769.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251226|ref|ZP_07337404.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307245829|ref|ZP_07527915.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247905|ref|ZP_07529940.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250159|ref|ZP_07532119.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252542|ref|ZP_07534438.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254802|ref|ZP_07536629.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307263583|ref|ZP_07545198.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166233838|sp|A3N0S5|CCA_ACTP2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702031|sp|B3GXR2|CCA_ACTP7 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|126097183|gb|ABN74011.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915375|gb|ACE61627.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649768|gb|EFL79946.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853531|gb|EFM85750.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855596|gb|EFM87764.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857824|gb|EFM89920.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860134|gb|EFM92151.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862328|gb|EFM94295.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306871226|gb|EFN02955.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 411 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P++++ + P + T +++Y Sbjct: 5 LVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 R + + +G + D +RRD TINA+ D G++ D GG DL NR Sbjct: 60 LARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGKQDLANR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A + ++ L+ + A L L++ER Sbjct: 120 LLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELAHLTAER 176 Query: 205 IWSEINKLLEAKNP 218 +W E K NP Sbjct: 177 VWLETQKAFATDNP 190 >gi|296112681|ref|YP_003626619.1| polynucleotide adenylyltransferase family protein [Moraxella catarrhalis RH4] gi|295920375|gb|ADG60726.1| polynucleotide adenylyltransferase family protein [Moraxella catarrhalis RH4] gi|326577572|gb|EGE27449.1| tRNA nucleotidyltransferase [Moraxella catarrhalis O35E] Length = 389 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 127/313 (40%), Gaps = 52/313 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV------IPTSISYGTIKIIC 84 +VGGAVRD ++ L + D D +V+ + V P + + + I Sbjct: 5 LVGGAVRDGVLGLPITDKDFMVVGATPQVLLDLGFIQVGVDFPVFLHPKTQAEYALARIE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD---------QQGKV 135 RK T + R + D +RRD TINAL + GKV Sbjct: 65 RKSGVGHTAFQVHADPSVR---------LEEDLIRRDLTINALAIEVKGLFDETPMTGKV 115 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI---DSDGLVASIK 192 ID+ GGL D++NRT++ + A ED LR+LR RFFA + DS + Sbjct: 116 IDFYGGLTDIQNRTLRHVSPA---FSEDPLRVLRVARFFARFAPLGFSIHDSTAKLMQDI 172 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 AK G + LS ER++SE K + I ++ LD+ L L+Q Sbjct: 173 AKSGEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQ--------LDILPFILPTLAQHFN 224 Query: 252 AEQVFEWKIDSLL-----------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Q + L F +L+S K + + + P+ IR F+ +F Sbjct: 225 TPQNRQRTFTRLALACTLNLPIFSHFAMLLSDLPKDDLSDCLNRLNAPKSIRQFIQTF-- 282 Query: 301 CNFNQKTLSIPEI 313 +F+ +++P I Sbjct: 283 NHFHDTFIALPNI 295 >gi|229096127|ref|ZP_04227100.1| CCA-adding enzyme [Bacillus cereus Rock3-29] gi|229115083|ref|ZP_04244493.1| CCA-adding enzyme [Bacillus cereus Rock1-3] gi|228668223|gb|EEL23655.1| CCA-adding enzyme [Bacillus cereus Rock1-3] gi|228687087|gb|EEL40992.1| CCA-adding enzyme [Bacillus cereus Rock3-29] Length = 346 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++G+++D G ++ R I +G+A +R ED LR++R RF + + G Sbjct: 68 MTEEGEMVDLFAGQEAIQKREIVTVGNAANRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + + + +F + +L + E Sbjct: 120 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSE 179 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 180 ERLLKATQ 187 >gi|258622328|ref|ZP_05717353.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus VM573] gi|258585344|gb|EEW10068.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus VM573] Length = 403 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 18/196 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V D D + P ++ + K P + T + + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKTKE----EHAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T ++ + G + D LRRD TINA+ D+ G+VID GG DL + Sbjct: 61 ARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDESGQVIDPYGGQRDLAAKV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 ++ + A +ED LR+LR RF AH G E+ + L+ I L L++ Sbjct: 121 LRHVSPA---FVEDPLRVLRVARFAAKLAHLGFTVAEETMQ---LMTDIAQSGELGHLTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E +K L +P Sbjct: 175 ERVWQEWHKSLSTNHP 190 >gi|149189053|ref|ZP_01867341.1| tRNA nucleotidyltransferase [Vibrio shilonii AK1] gi|148837016|gb|EDL53965.1| tRNA nucleotidyltransferase [Vibrio shilonii AK1] Length = 408 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 42/221 (19%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSI--------SYGTIK 81 +VGGAVRD L+ L V D D + P++++ + K P + + + Sbjct: 5 LVGGAVRDQLLKLEVYDKDWVVVGATPEQMLADGFQAVGKEFPVFLHPKSKQEHALARTE 64 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 K Y S +T + D +RRD TINA+ D G++ID G Sbjct: 65 RKAGKGYTGFECFSSPDVT------------LEQDLMRRDLTINAMAQDDSGRIIDPYNG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG-EKNIDSDGLVASIKAKKGL 197 DL+++ ++ + A +ED LR+LR RF A H G ++ L+ SI L Sbjct: 113 QQDLKDKVLRHVSPA---FVEDPLRVLRVARFAAKLRHLGFTVAPETMDLMKSIVNDGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + L++ER+W E +K L ++P E+FLDV Sbjct: 170 QHLTAERVWQEWHKSLTTRHP--------------EVFLDV 196 >gi|119773971|ref|YP_926711.1| polynucleotide adenylyltransferase region [Shewanella amazonensis SB2B] gi|119766471|gb|ABL99041.1| metal dependent phosphohydrolase [Shewanella amazonensis SB2B] Length = 427 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 26/203 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 K+ +VGGAVRDSL+ L V+D D + T+ + ++ + K P + T Sbjct: 6 KTYLVGGAVRDSLLGLDVKDRDYMVVGATV--EEMLAAGYRQVGKDFPVFLHPKT----- 58 Query: 85 RKKYFDITTLRSDLITDGRY-----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 +++Y T R G + V D K RRD TINA+ + G + D Sbjct: 59 QEEYALARTERKSGTGYGGFVCHASPDVTLEEDLK----RRDLTINAIAMAEDGSLHDPW 114 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKK 195 GG+ DL R ++ + +A +ED LR+LR RF A + + D+ L+ + Sbjct: 115 GGVADLEARLLRHVCEA---FVEDPLRVLRVARFAARFAPQGFTVAPDTLALMRQLTESG 171 Query: 196 GLKILSSERIWSEINKLLEAKNP 218 L L++ER+W E+ K+L +P Sbjct: 172 ELLYLTAERVWQELEKVLGCDSP 194 >gi|307256971|ref|ZP_07538748.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864546|gb|EFM96452.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 411 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P++++ + P + T +++Y Sbjct: 5 LVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 R + + +G + D +RRD TINA+ D G++ D GG DL NR Sbjct: 60 LARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGKQDLANR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A + ++ L+ + A L L++ER Sbjct: 120 LLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELAHLTAER 176 Query: 205 IWSEINKLLEAKNP 218 +W E K NP Sbjct: 177 VWLETQKAFATDNP 190 >gi|119468903|ref|ZP_01611928.1| poly(A) polymerase I [Alteromonadales bacterium TW-7] gi|119447555|gb|EAW28822.1| poly(A) polymerase I [Alteromonadales bacterium TW-7] Length = 475 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 34/249 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L G + +VGG +RD L+ +D D+ T PD+V ++F R Sbjct: 60 NAIKVLYRLKDGGFDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFRNCRL----I 115 Query: 74 SISYGTIKIICRKKYFDITTLR------------SDLITDGRYAKVVFTRDWKADSLRRD 121 + I+ ++ ++ T+R S T+G+ + + D+ RRD Sbjct: 116 GRRFRLAHIVFGREIIEVATMRGHHEAPESKNQISQSSTEGQLLRDNVFGSIEEDAERRD 175 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF------- 173 F+INALY + DY GL ++ + I+ IGD R ED +R+LR RF Sbjct: 176 FSINALYYSINDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKLDMS 235 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL-LEAKNPLNAIVHMYNGGIFK 232 A EK I +AS+ L + R++ E+ KL L K N ++ + G+F+ Sbjct: 236 IAPNSEKPISE---LASL-----LDNIPPARLFEEVLKLFLNGKAEANFLM-LRQYGLFR 286 Query: 233 EIFLDVQEI 241 +F + +I Sbjct: 287 ALFPALDKI 295 >gi|153803633|ref|ZP_01958219.1| multifunctional CCA protein [Vibrio cholerae MZO-3] gi|124120833|gb|EAY39576.1| multifunctional CCA protein [Vibrio cholerae MZO-3] Length = 232 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFIVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTHHP 190 >gi|237708182|ref|ZP_04538663.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457735|gb|EEO63456.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 474 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + + F K + S+ ++GT ++ Sbjct: 30 VVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGRGAHVSVFKNFGTAQVKYHDTE 89 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINA L + G+++D GL+D Sbjct: 90 VEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFNGLDD 149 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ RTI+ D +D LR++R RF ID A + K+ + I+S ER Sbjct: 150 LKERTIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDDTTFEALSRNKERIHIISKER 208 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L A P + + G+ IF ++ Sbjct: 209 IADELNKILLAPIPSKGFIELDRCGLLPLIFPEL 242 >gi|121730098|ref|ZP_01682501.1| tRNA nucleotidyltransferase [Vibrio cholerae V52] gi|147674076|ref|YP_001217948.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio cholerae O395] gi|262167278|ref|ZP_06034988.1| tRNA nucleotidyltransferase [Vibrio cholerae RC27] gi|172047582|sp|A5F5I2|CCA_VIBC3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|121628155|gb|EAX60685.1| tRNA nucleotidyltransferase [Vibrio cholerae V52] gi|146315959|gb|ABQ20498.1| tRNA nucleotidyltransferase [Vibrio cholerae O395] gi|227014338|gb|ACP10548.1| tRNA nucleotidyltransferase [Vibrio cholerae O395] gi|262024253|gb|EEY42944.1| tRNA nucleotidyltransferase [Vibrio cholerae RC27] Length = 403 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVSLED---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIVQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTNHP 190 >gi|85711815|ref|ZP_01042871.1| Poly(A) polymerase [Idiomarina baltica OS145] gi|85694430|gb|EAQ32372.1| Poly(A) polymerase [Idiomarina baltica OS145] Length = 454 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 114/268 (42%), Gaps = 30/268 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D+ L + L N G + + +VGG VRD L+ + +D D+ T P++V ++F Sbjct: 25 ISRKNISDNALKVLYRLHNSGFE-AYLVGGCVRDLLLGIQPKDFDVTTNATPEQVKKLFR 83 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRDW---- 113 R + I+ K ++ T R S+ + R T + Sbjct: 84 NCRL----VGRRFRLAHIVFGKDIIEVATFRGHHKEDDSEAASQTRKQPTAKTDEQGFLV 139 Query: 114 --------KADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + D+ RRDFT+NA+Y + I D+ GG DL I+ IGDA R ED Sbjct: 140 RDNVYGSIEEDAERRDFTVNAMYYNIADFCIYDFAGGKKDLDAGVIRLIGDAEQRYREDP 199 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 +R+LR RF N+ D V ++ L+ + R++ E K+ A Sbjct: 200 VRMLRAIRFATKL---NMQMDKHVQEPIVEMASLLRNIPPARLFDEFLKMFMAGKASANF 256 Query: 223 VHMYNGGIFKEIFLDVQEISLDQLSQVI 250 M +F+++F ++ D+ S I Sbjct: 257 EMMVQHNLFQQMFPVLKTYLKDEQSPAI 284 >gi|315127518|ref|YP_004069521.1| poly(A) polymerase I [Pseudoalteromonas sp. SM9913] gi|315016032|gb|ADT69370.1| poly(A) polymerase I [Pseudoalteromonas sp. SM9913] Length = 433 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 36/251 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + I +L L G + +VGG +RD L+ +D D+ T P++V ++F R Sbjct: 17 PNAIKVLYRLKDGGYDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFRNCRLIGRR 76 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++I + G + K ++ L+ D + + + D+ Sbjct: 77 FRLAHIVFGREIIEVATMRGHHEAQEDKNQISQSSEHGQLLRDNVFGSI------EEDAE 130 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF---- 173 RRDF+INALY I DY GL ++ + I+ IGD R ED +R+LR RF Sbjct: 131 RRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKL 190 Query: 174 ---FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A EK I + +AS+ L + R++ EI KL + + G+ Sbjct: 191 DMQIAPASEKPITA---LASL-----LDNIPPARLFEEILKLFLNGKAQQNFLMLRKYGL 242 Query: 231 FKEIFLDVQEI 241 FK +F ++ I Sbjct: 243 FKSLFPELDRI 253 >gi|237723713|ref|ZP_04554194.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437924|gb|EEO48001.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 474 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + + F K + S+ ++GT ++ Sbjct: 30 VVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGRGAHVSVFKNFGTAQVKYHDTE 89 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINA L + G+++D GL+D Sbjct: 90 VEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFNGLDD 149 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ RTI+ D +D LR++R RF ID A + K+ + I+S ER Sbjct: 150 LKERTIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDDTTFEALSRNKERIHIISKER 208 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L A P + + G+ IF ++ Sbjct: 209 IADELNKILLAPIPSKGFIELDRCGLLPLIFPEL 242 >gi|221140976|ref|ZP_03565469.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus str. JKD6009] Length = 320 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 91 ITTLRS--DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 +TT R+ D + R + V F RD D RRDFT+NA+ D K+ DY G D+ NR Sbjct: 1 MTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNR 60 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 I+ +G A R ED LR++R RF + +I ++ A +K LS ERI E Sbjct: 61 IIRTVGIAEERFQEDALRMIRCLRFQSQLS-FDIATETFEAMRIQMADIKFLSIERIVIE 119 Query: 209 INKLLEAKNPLNAIVHM 225 + KL+ N + H+ Sbjct: 120 LTKLMRGINVEKSFNHL 136 >gi|212211856|ref|YP_002302792.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuG_Q212] gi|215919265|ref|NP_820806.2| multifunctional CCA protein [Coxiella burnetii RSA 493] gi|206584149|gb|AAO91320.2| tRNA nucleotidyltransferase [Coxiella burnetii RSA 493] gi|212010266|gb|ACJ17647.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuG_Q212] Length = 381 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 22/270 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P+ + K K P + T Sbjct: 22 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTARGFKPVGKEFPVFLHPET------- 74 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ Y F + D RRD TINA+ +G++ID GG Sbjct: 75 -HEEYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 133 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+N+ ++ + A ED +R+LR R + + +I D L+ + + L Sbjct: 134 EDLKNKVLRHVSVAFQ---EDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 190 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ERIW E+N+ L + P + G +F EI ++ + + V + Sbjct: 191 VPERIWQELNRALGNEKPTRFFTVLNQCGALAILF---PEIKMEG-KGMAALQSVTDKTP 246 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 L+RF L S + I +A ++ +P E Sbjct: 247 SPLIRFATLQSDLPPEIIQKLAGRYRVPNE 276 >gi|85058468|ref|YP_454170.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84778988|dbj|BAE73765.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 470 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 25/221 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + + +L LNK + +VGG VRD L+ +D DI T+ P+++ ++F R Sbjct: 52 ENALKVLYRLNKAGYVAYLVGGGVRDLLLGKKPKDFDITTSATPEQMRKLFRNCRLVGRR 111 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSD---LITDGRYAKVVFTRDWKA 115 ++I + G +++ ++ L L+ D + + + Sbjct: 112 FRLAHVMFGPEIIEVATFRGHHQVLEPEEGATGAALTGQNGMLLRDNIFGSI------EE 165 Query: 116 DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDF++N+LY + DY GGL DL+ TI+ IGD R ED +R+LR RF Sbjct: 166 DAQRRDFSVNSLYYSVADFTLRDYTGGLKDLQEGTIRLIGDPETRYREDPVRMLRAVRFA 225 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 A + I + + L + R++ E KLL+A Sbjct: 226 AKL-DMTISRETAEPIPRLAALLHDIPPARLFEEALKLLQA 265 >gi|325134512|gb|EGC57157.1| multifunctional CCA protein [Neisseria meningitidis M13399] gi|325205983|gb|ADZ01436.1| multifunctional CCA protein [Neisseria meningitidis M04-240196] Length = 417 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 97/225 (43%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|325144615|gb|EGC66914.1| multifunctional CCA protein [Neisseria meningitidis M01-240013] Length = 417 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 97/225 (43%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + T R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYTLARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|261392497|emb|CAX50048.1| multifunctional CCA protein [includes: CCA-adding enzyme (tRNA nucleotidyltransferase; tRNA adenylyl-/cytidylyl-transferase; tRNA CCA-pyrophosphorylase; tRNA-NT) and 2'-nucleotidase and 2',3'-cyclic phosphodiesterase and phosphatase] [Neisseria meningitidis 8013] Length = 417 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 97/225 (43%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVPPA---FAEDPVRILRTARFAARYKFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|149003212|ref|ZP_01828108.1| polyA polymerase family protein [Streptococcus pneumoniae SP14-BS69] gi|147758672|gb|EDK65669.1| polyA polymerase family protein [Streptococcus pneumoniae SP14-BS69] Length = 199 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 3/129 (2%) Query: 89 FDITTLRS-DLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 +++TT R+ D+ D R V F R + D RRDFT+NA D+ G+++D GL DL Sbjct: 9 YEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDLFHGLEDLE 68 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + ++ +G A R ED LRI+R FRF A G ++ + A L+ +S ER + Sbjct: 69 KQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTLTPLLEKISVERTF 127 Query: 207 SEINKLLEA 215 E +KLL A Sbjct: 128 VEFDKLLLA 136 >gi|91794174|ref|YP_563825.1| polynucleotide adenylyltransferase region [Shewanella denitrificans OS217] gi|123165855|sp|Q12KC4|CCA_SHEDO RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|91716176|gb|ABE56102.1| metal dependent phosphohydrolase [Shewanella denitrificans OS217] Length = 413 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 16/195 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L+++D D + P ++ + + K P + ++ + Sbjct: 5 LVGGAVRDALLGLTIKDKDYLVVGSTPAEMLSLGYRQVGKDFPVFLHPKN------QQEY 58 Query: 90 DITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 + + T DG + D LRRD TINA+ D+QG++ D GG D+ + Sbjct: 59 ALARIERKTGTGYDGFSCDANEHVSLEEDLLRRDLTINAIAQDEQGQLHDPYGGQQDIIH 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN----IDSDGLVASIKAKKGLKILSSE 203 + ++ + A +ED LR+LR RF A + ++ L++ I L+ L++E Sbjct: 119 KQLRHVSQA---FVEDPLRVLRVARFAARFHSLGFTVATETMALMSQISLSGELEHLTAE 175 Query: 204 RIWSEINKLLEAKNP 218 R+W E + L P Sbjct: 176 RVWQECERALATDEP 190 >gi|161830664|ref|YP_001597649.1| multifunctional CCA protein [Coxiella burnetii RSA 331] gi|73619765|sp|Q820V9|CCA_COXBU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|189081872|sp|A9NAS1|CCA_COXBR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|161762531|gb|ABX78173.1| multifunctional CCA protein [Coxiella burnetii RSA 331] Length = 376 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 22/270 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P+ + K K P + T Sbjct: 17 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTARGFKPVGKEFPVFLHPET------- 69 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ Y F + D RRD TINA+ +G++ID GG Sbjct: 70 -HEEYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 128 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+N+ ++ + A ED +R+LR R + + +I D L+ + + L Sbjct: 129 EDLKNKVLRHVSVAFQ---EDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 185 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ERIW E+N+ L + P + G +F EI ++ + + V + Sbjct: 186 VPERIWQELNRALGNEKPTRFFTVLNQCGALAILF---PEIKMEG-KGMAALQSVTDKTP 241 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 L+RF L S + I +A ++ +P E Sbjct: 242 SPLIRFATLQSDLPPEIIQKLAGRYRVPNE 271 >gi|310798238|gb|EFQ33131.1| poly A polymerase head domain-containing protein [Glomerella graminicola M1.001] Length = 550 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 36/241 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRI----------FSKTRYKVIPTSISYGTIK 81 GG VRD L+ + DID A + + +KT +K+ P + G++ Sbjct: 57 AGGWVRDKLLGIESHDIDTAINAMTGYAFSLELRNYCAQDEHAKT-HKIGPDDM--GSLH 113 Query: 82 IIC----RKKYFDITT------------LRSDLIT-DGRYAKVVFTRDWKADSLRRDFTI 124 I + K+ + T LR + T D R V F + D+LRRD TI Sbjct: 114 RISANPDKSKHLETATTRMFGLDVDFVNLRKETYTQDSRNPMVEFGTA-EEDALRRDATI 172 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NAL+ + G V D GGL D+++R I+ D +D LR+LR RF + + +ID Sbjct: 173 NALFYNLHTGLVEDLTGGLADMKSRLIRTPMDPFQTFTDDPLRVLRLVRFASRL-DFSID 231 Query: 184 --SDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + ++A + LK+ +S ER+ E+ K+L+ K P +++ + G+++ IF+D Sbjct: 232 PAATAVMADARVLDALKLKISRERVGVEMEKMLKGKRPHSSLDLIRTLGLYEAIFMDPNN 291 Query: 241 I 241 I Sbjct: 292 I 292 >gi|229527052|ref|ZP_04416447.1| tRNA nucleotidyltransferase [Vibrio cholerae 12129(1)] gi|229335449|gb|EEO00931.1| tRNA nucleotidyltransferase [Vibrio cholerae 12129(1)] gi|327484938|gb|AEA79345.1| tRNA nucleotidyltransferase [Vibrio cholerae LMA3894-4] Length = 403 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V D D + P ++ + K P + + + + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKE----EHAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T ++ + G + D LRRD TINA+ D G++ID GG DL + Sbjct: 61 ARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDNSGQLIDPYGGQRDLAAKV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGLKILSS 202 ++ + A +ED LR+LR RF A H G E+ + L+A I L+ L++ Sbjct: 121 LRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGELQHLTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E +K L +P Sbjct: 175 ERVWQEWHKSLSTHHP 190 >gi|168013056|ref|XP_001759217.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689530|gb|EDQ75901.1| predicted protein [Physcomitrella patens subsp. patens] Length = 583 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 15/222 (6%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 LL+ G +S +VGG+VRD L+ +D DI TT P +V FS + I + Sbjct: 104 LLDAGY-RSYLVGGSVRDMLVKQVPKDFDILTTAEPKQVKAAFSG---RCIIVGRRFPVC 159 Query: 81 KIICRKKYFDITTLRSDLITDGR--YAKVVFTRDWKAD-------SLRRDFTINALYADQ 131 + ++++ ++ R Y VV T W D SLRRDFT+N + D Sbjct: 160 HVTSLNTVVEVSSFSTNSGNIKRITYEPVVGTEGWSEDDFSRWDNSLRRDFTVNGIMYDP 219 Query: 132 QGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +I DYVGGL DLR I+ + A ED RILR R A E + + A Sbjct: 220 FKCIIYDYVGGLRDLRRCKIRTVIPALESFEEDSARILRAIRIAARL-EFSFATSTANAI 278 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + K + L+ R+ E+N ++ + ++ ++ G+ + Sbjct: 279 RQLKSSILTLNKTRLQLEVNTMMAYGSSERSVRLLWRYGVLE 320 >gi|121634934|ref|YP_975179.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria meningitidis FAM18] gi|166233867|sp|A1KU50|CCA_NEIMF RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|120866640|emb|CAM10391.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis FAM18] Length = 417 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 97/225 (43%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + T R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYTLARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|50085387|ref|YP_046897.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter sp. ADP1] gi|73619734|sp|Q6FA38|CCA_ACIAD RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|49531363|emb|CAG69075.1| tRNA nucleotidyl transferase [Acinetobacter sp. ADP1] Length = 413 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 18/191 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D + P +++ K P + T +++Y Sbjct: 5 LVGGAVRDHLLGHPYHEKDYVVVGASPQQLLDQGFSPVGKDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R I G + FT + D +RRD TINA+ DQ G V D GG DL Sbjct: 60 LARTERKSGI--GYHGFNFFTDPDVSLEDDLIRRDLTINAMAMDQDGNVYDPYGGQKDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILSS 202 R ++ + DA +ED LR+LR RF +A YG K D L+ SI L+ L++ Sbjct: 118 QRILRHVSDA---FIEDPLRVLRVARFAARYARYGFKIADETLLLMQSITQTGELESLTA 174 Query: 203 ERIWSEINKLL 213 ER+W E ++ L Sbjct: 175 ERVWKETSRAL 185 >gi|153831058|ref|ZP_01983725.1| tRNA nucleotidyltransferase [Vibrio cholerae 623-39] gi|148873454|gb|EDL71589.1| tRNA nucleotidyltransferase [Vibrio cholerae 623-39] Length = 403 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 89/201 (44%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V D + RRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFACHYAPD-----VTLEEDLQ----RRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E NK L +P Sbjct: 170 QHLTAERVWQEWNKSLSTHHP 190 >gi|120602478|ref|YP_966878.1| polynucleotide adenylyltransferase region [Desulfovibrio vulgaris DP4] gi|120562707|gb|ABM28451.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris DP4] Length = 904 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 165/388 (42%), Gaps = 47/388 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKII-----C 84 VGG VRD L++ D+D+ I D V R+F+ + + T +I Sbjct: 491 VGGFVRDLLLDRPNYDLDL--VIEGDGVAFARVFAAEVGGRLREHAKFKTALVIFTDENG 548 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVG 140 ++ D+ T R + V K D RRDFTINAL Q G+++D+ G Sbjct: 549 AEQRVDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTINALAVQLDGAQFGRLVDFFG 608 Query: 141 GLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL 197 D++++ I+ + H + +ED RILR RF Y + L+ + + Sbjct: 609 SQRDMKDKGIRVL----HSLSFVEDPTRILRAVRFAVRYDFSIGPQTQRLIKNALGLGLM 664 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 LS RI+ E+ +LE + P+ + + + G+ + I + +++ + + + EQV Sbjct: 665 GRLSGPRIFHELRLILEEQAPVECLARLEHFGVLEAIH-PLFKLTPSRTNLLESTEQVLN 723 Query: 258 WK----IDS-----LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 W +D L+ + L K S+A + +LP R +S ++TL Sbjct: 724 WYRLLYLDEEPQRWLIYLLALCLNMKYKESASIADRLALPPSARNAFLS------TRETL 777 Query: 309 --SIPEIKKLFYLYGD----KVMIAKLKIFLALHYNNLTHQDTC--FILQVLSDIIHWKK 360 + P+++K G ++ L + LH + + + Q L+ + H K Sbjct: 778 RSTGPKVEKWMREEGPLSELYALLKPLALEGVLHMMARSKSEDLRRHVSQFLTRLQHEK- 836 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + GDD+ G+PPG G +L H Sbjct: 837 --LDINGDDLRAMGLPPGPAYGRVLQHV 862 >gi|46580063|ref|YP_010871.1| polyA polymerase family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449479|gb|AAS96130.1| polyA polymerase family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233937|gb|ADP86791.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris RCH1] Length = 904 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 165/388 (42%), Gaps = 47/388 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKII-----C 84 VGG VRD L++ D+D+ I D V R+F+ + + T +I Sbjct: 491 VGGFVRDLLLDRPNYDLDL--VIEGDGVAFARVFAAEVGGRLREHAKFKTALVIFTDENG 548 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVG 140 ++ D+ T R + V K D RRDFTINAL Q G+++D+ G Sbjct: 549 AEQRVDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTINALAVQLDGAQFGRLVDFFG 608 Query: 141 GLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL 197 D++++ I+ + H + +ED RILR RF Y + L+ + + Sbjct: 609 SQRDMKDKGIRVL----HSLSFVEDPTRILRAVRFAVRYDFSIGPQTQRLIKNALGLGLM 664 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 LS RI+ E+ +LE + P+ + + + G+ + I + +++ + + + EQV Sbjct: 665 GRLSGPRIFHELRLILEEQAPVECLARLEHFGVLEAIH-PLFKLTPSRTNLLESTEQVLN 723 Query: 258 WK----IDS-----LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 W +D L+ + L K S+A + +LP R +S ++TL Sbjct: 724 WYRLLYLDEEPQRWLIYLLALCLNMKYKESASIADRLALPPSARNAFLS------TRETL 777 Query: 309 --SIPEIKKLFYLYGD----KVMIAKLKIFLALHYNNLTHQDTC--FILQVLSDIIHWKK 360 + P+++K G ++ L + LH + + + Q L+ + H K Sbjct: 778 RSTGPKVEKWMREEGPLSELYALLKPLALEGVLHMMARSKSEDLRRHVSQFLTRLQHEK- 836 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + GDD+ G+PPG G +L H Sbjct: 837 --LDINGDDLRAMGLPPGPAYGRVLQHV 862 >gi|15614247|ref|NP_242550.1| tRNA CCA-pyrophosphorylase [Bacillus halodurans C-125] gi|73619745|sp|Q9KC89|CCA_BACHD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|10174301|dbj|BAB05403.1| poly(A) polymerase [Bacillus halodurans C-125] Length = 375 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 33/238 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++I+S L ++ IVGGAVRD + +D+D+ T+ P+ + ++ + Sbjct: 9 LSIVSELRDHGFEAYIVGGAVRDYHIGRKPKDVDVVTSASPEEIRTLYPH----AFQINR 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 + T+ + +K +++TLR I D D RDFTINA+ G + Sbjct: 65 QFQTLTVHLQKVAIEVSTLRGGSIED--------------DLCSRDFTINAMALAMNGDI 110 Query: 136 IDYVGGLNDLRNRTIK-FIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ID GG DL N I+ F +A R ED LR+LR RF + G + G +IK Sbjct: 111 IDPTGGKTDLENGVIRSFHPEA--RFKEDPLRMLRAPRFASELG--FTVAKGTAEAIKGS 166 Query: 195 KG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF---------KEIFLDVQEIS 242 L ++ ER+ E+ +L+ + + ++ G++ KE L ++EIS Sbjct: 167 CSLLADVAVERVEKELTQLMIGTHRSSGWCLLHETGLYPFIPGVSLSKETVLRMKEIS 224 >gi|315186818|gb|EFU20576.1| poly(A) polymerase [Spirochaeta thermophila DSM 6578] Length = 364 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 14/205 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + ++ L K + +VGGAVRD L+ +D DI T P R+ R+F R VI Sbjct: 36 DHHALMVIRRLRKAGHTAYVVGGAVRDLLLGKHPKDFDIVTCATPGRIKRLFPYAR--VI 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + + +Y ++TT RS D Y + + D+ RRDFT+NALY D Sbjct: 94 GRRFRLVHV-YVTKDEYVEVTTFRSARADDPNAYGSI------EEDAFRRDFTVNALYYD 146 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++D+V G +R R + I ED +R+LR ++ A E + + LV Sbjct: 147 PFSEEILDFVDGFTHVRERRLVPIIPLDRIFEEDPVRMLRAVKYHARM-ELEMPKE-LVR 204 Query: 190 SIKAKK-GLKILSSERIWSEINKLL 213 I+ L+ +S+ R+ EI K+L Sbjct: 205 KIRDDAWRLEEVSTSRLTEEIYKIL 229 >gi|93005824|ref|YP_580261.1| polynucleotide adenylyltransferase region [Psychrobacter cryohalolentis K5] gi|92393502|gb|ABE74777.1| Polynucleotide adenylyltransferase region [Psychrobacter cryohalolentis K5] Length = 390 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 22/245 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ ++D D ++ V + +V + + + R++Y Sbjct: 5 LVGGAVRDQLLGRPIKDKDF--VVVGATVTEMLEAGFQQVGADFPVF--LHPVNREEYAL 60 Query: 91 ITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ---------QGKVIDYVG 140 T R L G K D RRD TINA+ + G VIDY G Sbjct: 61 ARTERKQGLGYQGFSVHASIDVSLKDDLQRRDLTINAMAIEVTSLTDDTPISGDVIDYYG 120 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKG 196 GL D+ N+T++ + A + ED LR+LR RF++ Y + D+ L+ + A Sbjct: 121 GLQDIENKTLRHVSSAFN---EDPLRVLRTARFYSRYYDLGFTIADDTLVLMRELVASGE 177 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQLSQVIEAEQV 255 L LSSERIW E ++ + +P +++ G E F + Q + DQL + ++ Sbjct: 178 LTHLSSERIWQESSRAMMQLSPQVYWQQLFDIGALAEYFAPLHQAWNDDQLRETVQTSLY 237 Query: 256 FEWKI 260 F ++ Sbjct: 238 FAGQM 242 >gi|167764732|ref|ZP_02436853.1| hypothetical protein BACSTE_03122 [Bacteroides stercoris ATCC 43183] gi|167697401|gb|EDS13980.1| hypothetical protein BACSTE_03122 [Bacteroides stercoris ATCC 43183] Length = 474 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + ++ + S+ ++GT ++ Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALARRLGRGAHLSVFKNFGTAQLKYHGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 + R + T +V + D RRDFTINAL + + G+++D GG+ D Sbjct: 94 VEFVGARKESYTHDSRKPIVEDGSLEDDQNRRDFTINALAVCLNSQRYGELVDPFGGMAD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF ID D + + K+ + I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNKERISIISKER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L + P + + G+ + IF ++ Sbjct: 213 IADELNKILLSPVPSKGFIDLDRSGLLQLIFPEL 246 >gi|325677331|ref|ZP_08156996.1| polyA polymerase family protein [Rhodococcus equi ATCC 33707] gi|325551794|gb|EGD21491.1| polyA polymerase family protein [Rhodococcus equi ATCC 33707] Length = 484 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 107/220 (48%), Gaps = 8/220 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+++ D+D T P++V +I T I++GTI + Sbjct: 45 LVGGSVRDAVLGRLGTDLDFTTDAHPEQVQQILRGWADNQWDTGIAFGTISAAKGADQIE 104 Query: 91 ITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQG----KVIDYVGGLND 144 ITT R+D DG R +V + D +RRDFT+NA+ G + +D + G++ Sbjct: 105 ITTYRTDTY-DGVTRNPEVQYGTTLDEDLVRRDFTVNAMAVRVDGTGTFEFVDPLNGMDA 163 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + +D LR+LR RF + G + A ++ ++ +++ER Sbjct: 164 LLAGVLDTPAAPEISFNDDPLRMLRAARFVSQLG-FTLAPRVHEAIVEMSGQIERITAER 222 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + +E++KL+ + P++ + M G+ + ++ ++ L+ Sbjct: 223 VRTELDKLILGEFPIDGVNVMCETGLAARVIPEIPQLKLE 262 >gi|254490330|ref|ZP_05103519.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Methylophaga thiooxidans DMS010] gi|224464463|gb|EEF80723.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Methylophaga thiooxydans DMS010] Length = 408 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 23/223 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +S +VGG VRD L+ L+++D D + P+ ++ + + K P + T ++ Sbjct: 2 QSYLVGGCVRDKLLGLTIKDRDWVVVGSTPEHMLTLGFRPVGKDFPVFLHPET-----QE 56 Query: 87 KYFDITTLRSDLITDGR-------YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 +Y T R GR YA T + D RRD TINA+ D G +ID Sbjct: 57 EYALARTERKS----GRGYRGFDVYASPDVT--LEQDLARRDLTINAIAEDGDGNLIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKGLK 198 G DL N ++ + A +ED +R+LR RF A + D + L+A++ L Sbjct: 111 NGKADLDNGILRHVSPA---FIEDPVRVLRLARFAARFDFSIADETKQLIAAMIDSGELD 167 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L SER+W E++K L+ P + G K +F +V + Sbjct: 168 HLVSERVWQELSKALQTDKPSTFFTTLREVGALKILFPEVDRL 210 >gi|126665733|ref|ZP_01736714.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Marinobacter sp. ELB17] gi|126629667|gb|EBA00284.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Marinobacter sp. ELB17] Length = 386 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 23/232 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D + P+ ++ + P + T ++Y Sbjct: 9 LVGGAVRDQLLGLPVKDRDWVVVGATPETMLTQGFRQVGADFPVFLHPHT-----HEEYA 63 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + V++ + D RRD T+NA+ + G++ID GG DL+ Sbjct: 64 LARTERKQ--GRGYHGFTVYSAPDVTLEEDLKRRDLTVNAMAQAEGGEIIDPFGGQQDLQ 121 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 +R ++ + +A ED LRILR RF A + + + L+ ++ ++ L Sbjct: 122 DRLLRHVSEA---FAEDPLRILRTARFAARFAPQGFAVHPHTLQLMQAMTDAGEVRHLVP 178 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-----VQEISLDQLSQV 249 ER+W E+ + L +P+ +++ G E+ + V++ +L+ L Q+ Sbjct: 179 ERVWQELQRALHETSPVTFFEVLHSCGALIELLPEFAAQPVRQQALNALQQL 230 >gi|325266509|ref|ZP_08133186.1| multifunctional CCA protein [Kingella denitrificans ATCC 33394] gi|324981952|gb|EGC17587.1| multifunctional CCA protein [Kingella denitrificans ATCC 33394] Length = 410 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 25/218 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+NL V+D D + ++++ + K P + + + Sbjct: 5 LVGGAVRDALLNLPVKDRDWVVVGATAEQLLAQGYQPVGKDFPV--------FLHPQSHE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y D + D RRD TINA+ DQ G++ID GG DL Sbjct: 57 EYALARTERKTGRGYTAFQVFADPNVTLEEDLQRRDLTINAMAQDQDGRIIDPFGGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-----GLVASIKAKKGLKIL 200 + ++ + A ED +RILR RF A YG + G+V + +A L Sbjct: 117 QRGILRHVSPA---FAEDPVRILRVARFAARYGFSVAEETMRLMRGMVENGEAHA----L 169 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER+W E+ K L + P + + G + +V Sbjct: 170 VAERVWQELAKGLMERQPRRMVEVLRECGALAVLLPEV 207 >gi|294774980|ref|ZP_06740510.1| HD domain protein [Bacteroides vulgatus PC510] gi|294451189|gb|EFG19659.1| HD domain protein [Bacteroides vulgatus PC510] Length = 472 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + + F + + S+ ++GT ++ Sbjct: 28 VVGGYVRDIFLKRPSKDIDVVVVGSGIEMAQAFGRKLGRGAHVSVFKNFGTAQVKYHDTE 87 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINA L + G+++D GL+D Sbjct: 88 VEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFNGLDD 147 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ RTI+ D +D LR++R RF ID A + K+ + I+S ER Sbjct: 148 LKERTIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDDTTFEALSRNKERIHIISKER 206 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L A P + + G+ IF ++ Sbjct: 207 IADELNKILLAPIPSKGFIELDRCGLLPLIFPEL 240 >gi|50843738|ref|YP_056965.1| putative RNA nucleotidyltransferase [Propionibacterium acnes KPA171202] gi|50841340|gb|AAT84007.1| putative RNA nucleotidyltransferase [Propionibacterium acnes KPA171202] Length = 507 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 TT R+D D R ++V+ K D +RRDFT+NA+ + D GL D+ + Sbjct: 129 ATTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 248 LSKTLLTDHPREGL 261 >gi|78778529|ref|YP_396641.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT 9312] gi|78712028|gb|ABB49205.1| poly A polymerase family [Prochlorococcus marinus str. MIT 9312] Length = 406 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 143/315 (45%), Gaps = 56/315 (17%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----RYKVIPT 73 ILS L KG S +VGG +RD ++ +D+D+ ++P + I K K I Sbjct: 29 ILSFLPKG---SFLVGGYIRDIILGRLTEDVDV-DIVVPLNAIEIGKKISDNFESKFIIL 84 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +++I DI S I + D RDF+IN++ Sbjct: 85 DKKREVVRVILDHISIDIANQISSTI--------------EGDLSSRDFSINSIAFLFDN 130 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K + D GL DL + ++ + ++ D LRILR FRF + + K ID D L+ IK Sbjct: 131 KCLFDPFNGLKDLESSLLR--THSEKNLMNDPLRILRCFRFVSEFNFK-IDQD-LITYIK 186 Query: 193 AKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF-------KEIFLDVQEISLD 244 KG L ++ ERI EI K++ N L AI+ + N IF FLD+Q I+ + Sbjct: 187 KNKGKLYFVAKERINYEIQKIVTGANALEAIILVKNFNIFGSDNLYKDSFFLDLQNINYE 246 Query: 245 QL--------------SQVIEAEQVFEWKID--SLLRFIVLISWQ---DKKSI--LSMAK 283 +L +Q+++ + ++K ++R +L W KK+I L+ Sbjct: 247 ELNQYEKKNFLPFFFITQILDEVSLSKYKFSRAEIVRTKLLRKWHVFLKKKNITQLNELD 306 Query: 284 KFSLPREIRYFLISF 298 +F+L +E+ FL SF Sbjct: 307 RFALHQELEMFLPSF 321 >gi|320539905|ref|ZP_08039564.1| putative fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Serratia symbiotica str. Tucson] gi|320030091|gb|EFW12111.1| putative fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Serratia symbiotica str. Tucson] Length = 414 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 18/196 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+++ V D D + P ++ I + K P + T + + Sbjct: 5 LVGGAVRDGLLDIPVFDRDWVVVGATPAELLAIGYQQVGKDFPVFLHPDTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D LRRD TINA+ +G +ID G+ DL+ Sbjct: 63 --TERKSGHGYTGFTCCAAPDVTLEEDLLRRDLTINAIARSSEGVLIDPYQGVADLQAHV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 ++ + DA ED LR+LR RF FAH G E+ ++ L+ + L L++ Sbjct: 121 LRHVSDA---FAEDPLRVLRVARFAARFAHLGFSIAEETLE---LMRHMAHSGELAALTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E K L++++P Sbjct: 175 ERVWQETEKALQSQHP 190 >gi|77164400|ref|YP_342925.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707] gi|254434825|ref|ZP_05048333.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27] gi|76882714|gb|ABA57395.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707] gi|207091158|gb|EDZ68429.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27] Length = 401 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 10/201 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L K + +VGG VRD L+ +D D+ T P+++ +F R + Sbjct: 1 MLYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLFRSCRL----VGRRF 56 Query: 78 GTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + ++ + T R L +GR + D+ RRDF++NALY + + Sbjct: 57 RLAHLRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDAWRRDFSVNALYYNIRD 116 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 V+DY G+ DL ++ IGD R ED +R+LR RF A G + D + Sbjct: 117 FSVVDYTRGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLG-FTLHPDSETPIWE 175 Query: 193 AKKGLKILSSERIWSEINKLL 213 L+ + S R++ EI KL Sbjct: 176 LAPSLQEIPSARLFEEILKLF 196 >gi|282858987|ref|ZP_06268125.1| HDIG domain protein [Prevotella bivia JCVIHMP010] gi|282588267|gb|EFB93434.1| HDIG domain protein [Prevotella bivia JCVIHMP010] Length = 474 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 7/219 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ +V K S+ ++GT ++ R Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKNILGKKAHLSVFKNFGTAQVKYRDTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + +V + D RRDFTINA L D+ G+++D GG++D Sbjct: 94 VEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKDRLGELVDPFGGVDD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR++R RF ID + A + + +KI+S ER Sbjct: 154 LWDGIIRTPLDPDITFSDDPLRMMRCVRFATQLN-FFIDDETFAALERNAERIKIISGER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 I E+NK++ K P V ++ G+ + I ++ + + Sbjct: 213 IAEELNKIMMTKTPSKGFVDLHRCGLLQLIMPELTAMDI 251 >gi|228914211|ref|ZP_04077827.1| CCA-adding enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926666|ref|ZP_04089735.1| CCA-adding enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932924|ref|ZP_04095789.1| CCA-adding enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826727|gb|EEM72496.1| CCA-adding enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833042|gb|EEM78610.1| CCA-adding enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845415|gb|EEM90450.1| CCA-adding enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 346 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++G+++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 68 MTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + + + +F + +L + E Sbjct: 120 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSE 179 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 180 ERLLKATQ 187 >gi|89094177|ref|ZP_01167120.1| tRNA nucleotidyl transferase [Oceanospirillum sp. MED92] gi|89081652|gb|EAR60881.1| tRNA nucleotidyl transferase [Oceanospirillum sp. MED92] Length = 370 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N V D D + P+ ++ + + P I T + Sbjct: 5 LVGGAVRDKLLNYPVYDKDWVVVGSSPEEMIESGYQPVGQDFPVFIHPETGE-------- 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R+++ + Y + D + D +RRD TINA+ D+QG ++D G DL Sbjct: 57 EYALARTEMKSGKGYTGFNYFADKNVTLEEDLVRRDLTINAMAMDEQGSLVDPYDGQKDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +R ++ + A ED LR+LR RF + Y ++ L+ + L+ L+ Sbjct: 117 ADRILRHVSPAFS---EDPLRVLRVARFASRYNHLGFRVAQETLNLMQELALTDELEHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E + L K+P Sbjct: 174 TERVWKEFERALTEKSP 190 >gi|314922775|gb|EFS86606.1| tRNA adenylyltransferase [Propionibacterium acnes HL001PA1] gi|314982981|gb|EFT27073.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA3] gi|315091487|gb|EFT63463.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA4] gi|315105242|gb|EFT77218.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA2] Length = 507 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ + D +RRDFT+NA+ + D GL D+ + Sbjct: 129 VTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 248 LSKTLLTDHPREGL 261 >gi|282852983|ref|ZP_06262320.1| tRNA adenylyltransferase [Propionibacterium acnes J139] gi|282582436|gb|EFB87816.1| tRNA adenylyltransferase [Propionibacterium acnes J139] Length = 499 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 61 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 120 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ + D +RRDFT+NA+ + D GL D+ + Sbjct: 121 VTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 180 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 181 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 239 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 240 LSKTLLTDHPREGL 253 >gi|209363657|ref|YP_001423491.2| tRNA nucleotidyltransferase [Coxiella burnetii Dugway 5J108-111] gi|212217801|ref|YP_002304588.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuK_Q154] gi|207081590|gb|ABS78203.2| tRNA nucleotidyltransferase [Coxiella burnetii Dugway 5J108-111] gi|212012063|gb|ACJ19443.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuK_Q154] Length = 381 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 115/270 (42%), Gaps = 22/270 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P+ + K K P + T Sbjct: 22 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTARGFKPVGKEFPVFLHPET------- 74 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ Y F + D RRD TINA+ +G++ID GG Sbjct: 75 -HEEYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 133 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+N+ ++ + A ED +R+LR R + + +I D L+ + + L Sbjct: 134 EDLKNKVLRHVSVAFQ---EDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 190 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+N+ L + P + G +F EI ++ + + V + Sbjct: 191 VPERVWQELNRALGNEKPTRFFTVLNQCGALAILF---PEIKMEG-KGMAALQSVTDKTP 246 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 L+RF L S + I +A ++ +P E Sbjct: 247 SPLIRFATLQSDLPPEIIQKLAGRYRVPNE 276 >gi|327328873|gb|EGE70633.1| tRNA adenylyltransferase [Propionibacterium acnes HL103PA1] Length = 507 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDGTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ + D +RRDFT+NA+ + D GL D+ + Sbjct: 129 VTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 248 LSKTLLTDHPREGL 261 >gi|229183830|ref|ZP_04311047.1| CCA-adding enzyme [Bacillus cereus BGSC 6E1] gi|228599679|gb|EEK57282.1| CCA-adding enzyme [Bacillus cereus BGSC 6E1] Length = 347 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 9 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 68 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++G+++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 69 MTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 120 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + + + +F + +L + E Sbjct: 121 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSE 180 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 181 ERLLKATQ 188 >gi|314965692|gb|EFT09791.1| tRNA adenylyltransferase [Propionibacterium acnes HL082PA2] gi|315094587|gb|EFT66563.1| tRNA adenylyltransferase [Propionibacterium acnes HL060PA1] Length = 507 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 3/194 (1%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD I + + ++GTI + Sbjct: 69 LVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIGRAFGTIGAQIDDWVVE 128 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R ++V+ + D +RRDFT+NA+ + D GL D+ + Sbjct: 129 VTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAATRTFSDPYAGLTDIVSG 188 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ +D LR++R RF + G + ++ A ++I+S+ER+ E Sbjct: 189 ILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTDMASRIEIISAERVRDE 247 Query: 209 INKLLEAKNPLNAI 222 ++K L +P + Sbjct: 248 LSKTLLTDHPREGL 261 >gi|59712851|ref|YP_205627.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio fischeri ES114] gi|73619895|sp|Q5E2K7|CCA_VIBF1 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|59480952|gb|AAW86739.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Vibrio fischeri ES114] Length = 407 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 26/200 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+N+ V+D D + P ++ + +T + P ++ T +++Y Sbjct: 5 LVGGAVRDSLLNIDVKDKDWVVVGSTPQKMDSLGYQTVGQDFPVFLNPKT-----KEEYA 59 Query: 90 DITTLRSDLITDGR-------YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 T R G+ YA+ T + D LRRD TINA+ G++ID G Sbjct: 60 LARTERKS----GQGYKGFTCYAEPDVT--LEEDLLRRDLTINAIAQADNGELIDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LK 198 D+ +RT++ + DA ED LR+LR RF F H G + + G L Sbjct: 114 QDIIDRTLRHVSDA---FTEDPLRVLRVARFAARFHHLGFTVAPETMHLMKVLVDSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L++ER+W E K L +++P Sbjct: 171 HLTAERVWQEWQKSLSSQHP 190 >gi|149376043|ref|ZP_01893809.1| metal dependent phosphohydrolase [Marinobacter algicola DG893] gi|149359680|gb|EDM48138.1| metal dependent phosphohydrolase [Marinobacter algicola DG893] Length = 369 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 117/270 (43%), Gaps = 21/270 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D + T P+ ++R K P + T R+ Sbjct: 2 KTYLVGGAVRDELLGLPVKDRDWVVTGATPEDMLRKGFKQVGADFPVFLHPDT-----RE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R G + V++ + D RRD TINA+ G+++D G Sbjct: 57 EYALARTERKQ--GRGYHGFTVYSAPDVPLEDDLKRRDLTINAMAKSTAGEIVDPFHGRQ 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL++ ++ + +A ED LRILR RF A + + L+ + + + Sbjct: 115 DLQDHKLRHVSEA---FAEDPLRILRTARFAARLQPQGFTIAEPTMALMRQMVDQGEVGD 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-EQVFEW 258 L ER+W EI + L + P + G + +++ L+ S I A + E Sbjct: 172 LVPERVWQEIQRALHEQEPGTFFEVLRECGALAVLIPELE--PLEAFSGAIGALRRAHES 229 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 D+ +RF L+S + A+ P Sbjct: 230 SDDTSVRFAALLSPLAPAEARNRARALKAP 259 >gi|323491183|ref|ZP_08096369.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio brasiliensis LMG 20546] gi|323314551|gb|EGA67629.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio brasiliensis LMG 20546] Length = 403 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 24/199 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + V D D + P++++ K P + + ++++ Sbjct: 5 LVGGAVRDQLLKIDVYDRDWVVVGSTPEQLLEKGYTAVGKDFPVFLHPES-----KEEHA 59 Query: 90 DITTLRSDLITDGRYA-KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R I G + F D + D +RRD TINA+ D G +ID G DL Sbjct: 60 LARTERK--IGAGYTGFECYFAADVTLEEDLMRRDLTINAMAQDPNGNIIDPFNGQADLN 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGLKI 199 +R ++ + DA ED LR+LR RF A H G E+ +D L+ I L Sbjct: 118 DRVLRHVSDA---FTEDPLRVLRVARFAAKLDHLGFTIAEETLD---LMRQIAHSGELSN 171 Query: 200 LSSERIWSEINKLLEAKNP 218 L+ ER+W E +K L +NP Sbjct: 172 LTPERVWQEWHKSLSTENP 190 >gi|226946697|ref|YP_002801770.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Azotobacter vinelandii DJ] gi|259585840|sp|C1DIX6|CCA_AZOVD RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226721624|gb|ACO80795.1| t-RNA nucleotidyltransferase/poly(A) polymerase [Azotobacter vinelandii DJ] Length = 418 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 20/216 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V ++D + + ++ + + P + T + + Sbjct: 6 VGGAVRDRLLGRPVSEVDWVVVGASAEELLALGYRPVGADFPVFLHPRTGE--------E 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D LRRD TINA+ D+QG++ID G DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPEVTLEEDLLRRDLTINAMAEDEQGRLIDPCHGRRDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ + L+ L++ Sbjct: 118 QRWLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVAPETRALMRQLAESGELQALTA 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER W EI++ L P I + + G E+ ++ Sbjct: 175 ERSWKEISRALLEPRPDVFIRTLRDCGALHELLPEI 210 >gi|118475008|ref|YP_892181.1| polyA polymerase family protein [Campylobacter fetus subsp. fetus 82-40] gi|118414234|gb|ABK82654.1| polyA polymerase family protein [Campylobacter fetus subsp. fetus 82-40] Length = 368 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 19/240 (7%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVM 60 +S + + F +++L + ++L ++ +VGG VRD L+ D DI I P + Sbjct: 3 ISNIVSQIFQNNELSTLKNILKHRTKRAYLVGGCVRDMLLGAKNIDFDIEVYDIDPFK-- 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVV-FTRDWKADSL 118 F + + T + G + + K +DI+ R++ G A +V + D K S Sbjct: 61 --FENIMHDIGATGV--GKSYFVYKYKNYDISLPRTESKNGIGHKAFIVSYCNDEKIASK 116 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ + G+++D+ GG D++N+ +K + H ED LR+LR +F A + Sbjct: 117 RRDFTMNAMMINIFNGEILDFWGGRKDIQNKILKIVD--KHSFCEDSLRVLRAVQFAARF 174 Query: 178 GEKNIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G K + S+K + + I LS +RI SE+ K A + I + + G+ K +F Sbjct: 175 GLKADEQ-----SLKIMRNISIDDLSKDRIRSELEKFFIAPHKTFGIELLSDLGLDKRLF 229 >gi|238910006|ref|ZP_04653843.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 413 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 28/221 (12%) Query: 31 IVGGAVRDSLMNLSVQDID---IATTILP------DRVMRIFSKTRYKVIPTSISYGTIK 81 +VGGAVRD+L+ L V+D D + T+ +V R F + + + Sbjct: 5 LVGGAVRDALLGLPVKDKDWVVVGATLQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTE 64 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 Y T + +T +AD RRD TINAL D G++ID G Sbjct: 65 RKSGSGYTGFTCYAAPDVT------------LEADLQRRDLTINALARDDDGQIIDPYHG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L Sbjct: 113 RRDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + L+ ER+W E L +NP + + G + +F ++ Sbjct: 170 EHLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEI 210 >gi|48428744|gb|AAT42393.1| tRNA nucleotidyltransferase polyA polymerase [Collimonas fungivorans Ter331] Length = 408 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 18/194 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ L V+D D + PD ++ + K P + T + + Sbjct: 6 VGGAVRDELLGLPVKDRDYVVVGATPDDMLAQGFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ T Y VF D + D +RRD TINA+ G V D G DL+ Sbjct: 58 YALARTERKTAPGYKGFVFHTDPDVTLEQDLVRRDLTINAIARAGDGTVADPFNGRRDLQ 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILSSER 204 +R + + DA ED +RILR RF A + + + +++ L+ + A + L ER Sbjct: 118 DRVFRHVSDA---FAEDPVRILRVARFAARFTDFTVAPETNALMQRMVAAGEVDALVPER 174 Query: 205 IWSEINKLLEAKNP 218 +W E+ + L P Sbjct: 175 VWQELARGLMESRP 188 >gi|237795262|ref|YP_002862814.1| hypothetical protein CLJ_B2031 [Clostridium botulinum Ba4 str. 657] gi|229261178|gb|ACQ52211.1| conserved domain protein [Clostridium botulinum Ba4 str. 657] Length = 398 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 23/206 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK--------- 81 I+GGA+RD ++N + DIDI P ++ + + TIK Sbjct: 31 IIGGAIRDIILNNKINDIDICLEGEPKELIYRMKNIKEYIYYDEFHTSTIKFQNNIQIDL 90 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG 140 I CRK+ ++ +G K+ + + K + RRDFTINAL D + K++D+ Sbjct: 91 IGCRKEKYE---------YEGALPKITLS-NIKNNLERRDFTINALAYDIVEDKILDFFN 140 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G+ DLR K I ++ +ED RI R ++ YG K D + SI K LK + Sbjct: 141 GMEDLRKG--KIIKIHNNSYMEDGTRIFRAIKYSIRYGFKIEDEKEIRESI-TKGTLKNI 197 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMY 226 S++RI SE+ L +N + AI Y Sbjct: 198 SNDRIVSELYSLCTEENWIEAIKQCY 223 >gi|228938747|ref|ZP_04101350.1| CCA-adding enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971629|ref|ZP_04132251.1| CCA-adding enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978238|ref|ZP_04138615.1| CCA-adding enzyme [Bacillus thuringiensis Bt407] gi|228781255|gb|EEM29456.1| CCA-adding enzyme [Bacillus thuringiensis Bt407] gi|228788042|gb|EEM35999.1| CCA-adding enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820922|gb|EEM66944.1| CCA-adding enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 346 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 22/199 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSALGFSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISLDQLSQ 248 F + +L + E L + +Q Sbjct: 169 FSHLPYLQMSEERLLKATQ 187 >gi|224373272|ref|YP_002607644.1| CCA-adding enzyme [Nautilia profundicola AmH] gi|223588967|gb|ACM92703.1| CCA-adding enzyme [Nautilia profundicola AmH] Length = 364 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 19/192 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD ++ + ++ DI I P++ + K K + S + + K F Sbjct: 36 LVGGCVRDEILGIKSKEFDIEVYDITPEKFDILMQKLGAKGVGKSF------FVYKWKNF 89 Query: 90 DITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 DI+ R++ I G +V T+D K S RRDFT+NAL + GK++D+ GG+ND+ Sbjct: 90 DISLPRTETKIAKGHKGFEVSLTQDEKTASKRRDFTMNALMKNIYTGKILDFWGGINDIN 149 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSER 204 N+ IK I D ED LR+LR +F + K I+ +I+ K L + LS ER Sbjct: 150 NKIIKHIDDIS--FAEDPLRVLRAMQFASRLKFK-IER----KTIELCKTLDLNELSRER 202 Query: 205 IWSEINKLLEAK 216 I+ E K+ +++ Sbjct: 203 IFMEFEKMFKSR 214 >gi|153206203|ref|ZP_01945466.1| multifunctional CCA protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918249|ref|ZP_02218335.1| multifunctional CCA protein [Coxiella burnetii RSA 334] gi|189081871|sp|A9KEZ9|CCA_COXBN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|120577333|gb|EAX33957.1| multifunctional CCA protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918109|gb|EDR36713.1| multifunctional CCA protein [Coxiella burnetii RSA 334] Length = 376 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 115/270 (42%), Gaps = 22/270 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P+ + K K P + T Sbjct: 17 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTARGFKPVGKEFPVFLHPET------- 69 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ Y F + D RRD TINA+ +G++ID GG Sbjct: 70 -HEEYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 128 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+N+ ++ + A ED +R+LR R + + +I D L+ + + L Sbjct: 129 EDLKNKVLRHVSVAFQ---EDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 185 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+N+ L + P + G +F EI ++ + + V + Sbjct: 186 VPERVWQELNRALGNEKPTRFFTVLNQCGALAILF---PEIKMEG-KGMAALQSVTDKTP 241 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 L+RF L S + I +A ++ +P E Sbjct: 242 SPLIRFATLQSDLPPEIIQKLAGRYRVPNE 271 >gi|33152215|ref|NP_873568.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus ducreyi 35000HP] gi|73619776|sp|Q9L7A3|CCA_HAEDU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|6760461|gb|AAF28362.1|AF224467_1 tRNA nucleotidyltransferase [Haemophilus ducreyi] gi|33148437|gb|AAP95957.1| tRNA nucleotidyltransferase [Haemophilus ducreyi 35000HP] Length = 412 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 29/202 (14%) Query: 31 IVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD L+NL ++D D A ++ ++ + + P + + Sbjct: 5 LVGGAVRDQLLNLPIKDRDFLVVGATAKELINQGYQQVGADFPVFLHPVTQQEYALARQE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLN 143 RK T D + V +D +RRD TINA+ D G++ D GG Sbjct: 65 RKSGTGYTGFVCDFSPN-----VTLEQDL----IRRDLTINAMAQDLTSGQIFDPFGGKT 115 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG----EKNIDSDGLVASIKAKKG 196 DL NR ++ I DA ED LR+LR RF F H G E+ ++ L+ + A Sbjct: 116 DLANRLLRHISDA---FAEDPLRVLRVARFAARFHHLGFSIAEQTLE---LMQKMTACGE 169 Query: 197 LKILSSERIWSEINKLLEAKNP 218 L L++ERIW E K L ++P Sbjct: 170 LNHLTAERIWRETEKALHTESP 191 >gi|302497111|ref|XP_003010556.1| hypothetical protein ARB_03257 [Arthroderma benhamiae CBS 112371] gi|291174099|gb|EFE29916.1| hypothetical protein ARB_03257 [Arthroderma benhamiae CBS 112371] Length = 605 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 110/241 (45%), Gaps = 37/241 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK---------TRYKV-IPTSISYGTI- 80 GG VRD ++ + QDID+ + + + K RYK P G I Sbjct: 122 TGGWVRDKVLGVDSQDIDVGISTMTGYEFGLALKEYLDIPENLERYKAHYPEHALKGVIG 181 Query: 81 ---KIIC---RKKYFDITT------------LRSDLITD-GRYAKVVFTRDWKADSLRRD 121 KI + K+ + TT LR + TD R +V F + D+LRRD Sbjct: 182 GLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFG-TAEEDALRRD 240 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 T+NAL+ + G+V D+ G GL+D+ + I+ + +D LR+LR RF + G Sbjct: 241 ATVNALFYNLHTGEVEDFTGMGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLIRFASRLGY 300 Query: 179 --EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + N + IK LKI S ERI EI K+L +PL A++ + G++ IF Sbjct: 301 TIDPNTEESMCDDDIKHSLRLKI-SQERIGIEIEKMLRGPDPLGALMIINRLGLYDTIFS 359 Query: 237 D 237 D Sbjct: 360 D 360 >gi|262275012|ref|ZP_06052823.1| tRNA nucleotidyltransferase [Grimontia hollisae CIP 101886] gi|262221575|gb|EEY72889.1| tRNA nucleotidyltransferase [Grimontia hollisae CIP 101886] Length = 409 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 22/201 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT------TILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K+ +VGGAVRD L+ L+V+D D T+L ++ + + P + + Sbjct: 2 KTYLVGGAVRDELLGLNVKDRDWVVVGADIDTMLRAGYQQVGADFPVFLHPKTHEEHALA 61 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 RK T D +V D + RRD TINA+ + G ++D GG Sbjct: 62 RTERKSGKGYTGFVCDFTP-----QVTLEEDLQ----RRDLTINAIAKAEDGTLVDPYGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGL 197 DL NR ++ + A +ED LR+LR RF F H G + D L+ I L Sbjct: 113 QQDLSNRLLRHVSPA---FVEDPLRVLRVARFAARFHHLGFRVADETLTLMKHIVDSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E K L +++P Sbjct: 170 EALTAERVWKEWEKSLSSQHP 190 >gi|255318403|ref|ZP_05359636.1| multifunctional CCA protein [Acinetobacter radioresistens SK82] gi|262378633|ref|ZP_06071790.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter radioresistens SH164] gi|255304395|gb|EET83579.1| multifunctional CCA protein [Acinetobacter radioresistens SK82] gi|262299918|gb|EEY87830.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter radioresistens SH164] Length = 415 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 20/192 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ Q+ D + P++++ K P + T + +Y Sbjct: 5 LVGGAVRDHLLGHPYQEKDYVVVGATPEQLLAQGFMPVGKDFPVFLHPDT-----KDEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y F D + D +RRD TINA+ D+QG+V D G DL Sbjct: 59 --ALARTERKSGQGYHGFEFHTDSSVTLEEDLIRRDLTINAMAMDEQGQVYDPYQGRQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +N+ ++ + DA +ED LR+LR RF A Y ++ L+ + L L+ Sbjct: 117 KNKVLRHVSDA---FIEDPLRVLRVARFAARYAPYGFKIAEETMSLMQQLVNTGELDTLT 173 Query: 202 SERIWSEINKLL 213 ER+W E ++ L Sbjct: 174 PERVWKETSRAL 185 >gi|90411906|ref|ZP_01219914.1| putative tRNA nucleotidyltransferase [Photobacterium profundum 3TCK] gi|90327164|gb|EAS43536.1| putative tRNA nucleotidyltransferase [Photobacterium profundum 3TCK] Length = 411 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 30/260 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V D D + P++++ + P + T +++Y Sbjct: 5 LVGGAVRDALLGLKVVDKDWMVVGATPEQMLDQGYEQVGSDFPVFLHPKT-----KQEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + ++ + D +RRD TINA+ G++ID G DL Sbjct: 60 LARTERKS--GKGYTGFICYSAPDVTLEQDLMRRDLTINAIAQKNDGRLIDPYNGQQDLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 N+ ++ + A +ED LR+LR RF FAH G ++ L+ + L+ L+ Sbjct: 118 NKILRHVSPA---FVEDPLRVLRVARFSARFAHLGFTIAPETIALMQEMVVAGELEALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ-----------VI 250 ER+W E K L +NP + + G K + ++ + + Q +Q ++ Sbjct: 175 ERVWKEWEKSLSTENPEVFLTVLRQCGALKVVMPEIDALFGVPQPAQWHPEIDCGIHTLM 234 Query: 251 EAEQVFEWKIDSLLRFIVLI 270 A+Q E + ++RF I Sbjct: 235 VAKQAAELSPNKVIRFAAQI 254 >gi|95931324|ref|ZP_01314039.1| Polynucleotide adenylyltransferase region [Desulfuromonas acetoxidans DSM 684] gi|95132625|gb|EAT14309.1| Polynucleotide adenylyltransferase region [Desulfuromonas acetoxidans DSM 684] Length = 880 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 93/405 (22%), Positives = 168/405 (41%), Gaps = 51/405 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-FD 90 VGG VRD L++ D+DI R F+ + + T +I Y D Sbjct: 485 VGGFVRDLLLHKKNLDVDIVVEGNAIDFARRFADQHACRVRAHEKFVTAVVIFDDGYKLD 544 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGKVIDYVGGLNDLR 146 + + R++ + V K D RRDFTIN AL D G+++DY G DL Sbjct: 545 VASTRTEYYLEPGALPNVEEASIKLDLYRRDFTINTLALALNHDSYGELLDYFGAQRDLH 604 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERI 205 ++ I+ + + +ED R+ R RF G K + ++ L+ S ++ + R+ Sbjct: 605 DKAIRVLHNLS--FVEDPTRMFRAVRFEQRLGFKLGMHTENLLRSAVEMDFVQRVGPLRL 662 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIF-------------KEIFLDVQEISLDQLSQVIEA 252 ++E+ +L +NP AI + G+ KE F Q+ +L + Sbjct: 663 FNELTIILNEENPFPAISRLEELGLLACLCDQWRVDARVKESFRQAQK-ALHWHELLYTG 721 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS--------FFNCNFN 304 V W ++ F+ L ++ ++ K S+P+ + L+ F + Sbjct: 722 SPVERW----VVYFLCLSQPLSDDAMAAVCGKLSVPQRWQDILVGERCRVMKVFHRLERD 777 Query: 305 QKTLS---IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-- 359 Q+ L+ E+ + GD+++ L+ TH D L V + W+ Sbjct: 778 QQKLAEYRPSEVSQRLKGIGDEML---------LYAMARTHSDAVR-LAVSQYLTQWRDV 827 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 KPL L GDD++ G+ G ++G +L + +++ Q+++ Sbjct: 828 KPL--LNGDDLIALGVDRGPRIGEVLALLRDARLDAEVSSRQDEV 870 >gi|302663486|ref|XP_003023385.1| hypothetical protein TRV_02487 [Trichophyton verrucosum HKI 0517] gi|291187379|gb|EFE42767.1| hypothetical protein TRV_02487 [Trichophyton verrucosum HKI 0517] Length = 533 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 110/241 (45%), Gaps = 37/241 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK---------TRYKV-IPTSISYGTI- 80 GG VRD ++ + QDID+ + + + K RYK P G I Sbjct: 50 TGGWVRDKVLGVDSQDIDVGISTMTGYEFGLALKEYLDIPENLERYKAHYPEHALKGVIG 109 Query: 81 ---KIIC---RKKYFDITT------------LRSDLITD-GRYAKVVFTRDWKADSLRRD 121 KI + K+ + TT LR + TD R +V F + D+LRRD Sbjct: 110 GLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGT-AEEDALRRD 168 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 T+NAL+ + G+V D+ G GL+D+ + I+ + +D LR+LR RF + G Sbjct: 169 ATVNALFYNLHTGEVEDFTGMGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLIRFASRLGY 228 Query: 179 --EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + N + IK LKI S ERI EI K+L +PL A++ + G++ IF Sbjct: 229 TIDPNTEESMCDDDIKHSLRLKI-SQERIGIEIEKMLRGPDPLGALMIINRLGLYDTIFS 287 Query: 237 D 237 D Sbjct: 288 D 288 >gi|317401373|gb|EFV82008.1| CCA-adding enzyme [Achromobacter xylosoxidans C54] Length = 367 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 22/217 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKY 88 IVGGAVRD+L+ L+ D D + P+ R IP + + + +++Y Sbjct: 14 IVGGAVRDALLGLTPGDHDWVVVGATPE------DMARRGFIPVGGDFPVFLHPVTKEEY 67 Query: 89 FDITTLRSDLITDGR-YAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 T R GR Y F + D RRD T+NA+ Q G+++D +GG Sbjct: 68 ALARTERKS----GRGYKGFTFYTGTDVTLEEDLRRRDLTVNAIAQKQDGELVDPLGGAA 123 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILS 201 D+R R + +G+A ED +RILR RF A + + ++ + L + L Sbjct: 124 DVRARVFRHVGEAFQ---EDPVRILRLARFAARFADFSVAPETMALCRQMVEAGEADALV 180 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+++ L A P + + G + + ++ Sbjct: 181 PERVWKEVSRGLMAAAPSRMLDVLRQSGALERVMPEL 217 >gi|239995672|ref|ZP_04716196.1| tRNA nucleotidyltransferase [Alteromonas macleodii ATCC 27126] Length = 392 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+N V + D + P+ ++ K P + T +++Y Sbjct: 5 LVGGAVRDALLNRKVVERDYVVVGATPEEMLSQGFTQVGKDFPVFLHPKT-----QEEYA 59 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + + D LRRD T+NA+ D G +ID GG DL NR Sbjct: 60 LARTERKSGKGYTGFVCDASSSVTLEEDLLRRDLTVNAIAQDNLGNLIDPYGGKKDLENR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + +A ED LR+ R RF Y ++ L+ S+ L LS+ER Sbjct: 120 LLRHVSEAFS---EDPLRVFRVARFATRYAYLGFTIATETMALMQSMAQSGELSTLSAER 176 Query: 205 IWSEINKLLEAKNP 218 +W E + L K P Sbjct: 177 VWQETKRSLLEKTP 190 >gi|295661733|ref|XP_002791421.1| tRNA nucleotidyltransferase [Paracoccidioides brasiliensis Pb01] gi|226279978|gb|EEH35544.1| tRNA nucleotidyltransferase [Paracoccidioides brasiliensis Pb01] Length = 633 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 43/247 (17%) Query: 32 VGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSK--------TRYKVI-PTSIS----- 76 GG VRD L+ + DID+A ++ +R + +YK + P++ S Sbjct: 145 AGGWVRDKLLGVESHDIDVAINSMTGERFGEGLKEYLSIPGNLRKYKKLHPSNPSVVDFI 204 Query: 77 --YGTIKIICRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + K R K+ + T LR + TD + + DSLRRD Sbjct: 205 KLHKIEKNPERSKHLETATTRMFGLDIDFVNLRKETYTDESRNPQIEVGTPEEDSLRRDA 264 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-- 178 T+NAL+ + ++I D+ G GL D+ N+ I+ + +D LR+LR RF + G Sbjct: 265 TVNALFYNIHTELIEDFTGQGLQDMENKVIRTPMEPFQTFKDDPLRVLRLIRFASRLGYT 324 Query: 179 -----EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 E+ + D + +++KAK +S ERI EI K L +PL A+ + G++ Sbjct: 325 IDCDTEEAMKIDAIKSALKAK-----ISQERIGVEIEKTLRGPDPLTALQRINRLGLYDT 379 Query: 234 IFLDVQE 240 I + Q+ Sbjct: 380 ILANHQD 386 >gi|307824886|ref|ZP_07655108.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] gi|307733933|gb|EFO04788.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] Length = 407 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 20/217 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V++ D + P+ ++R + K P + K + Sbjct: 5 LVGGAVRDKLLELPVKERDWVVIGETPESMVRQGFRPVGKDFPV--------FLHPKTHE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y + D +RRD TINA+ +G+++D GG DL Sbjct: 57 EYALARTERKTAPGYKGFTVHASPDVSLEQDLIRRDLTINAMAMTPEGQLVDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R + I A ED +RILR RF A YG ++ L+ S+ + L Sbjct: 117 EKRIFRHISPA---FAEDPVRILRIARFAARYGHLGFTLAEETRILMRSMVTAGEVDHLV 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W+E+ K L K+P + + +IF ++ Sbjct: 174 PERVWAELFKALGEKSPSAFFYTLKDCAALDKIFPEI 210 >gi|327300072|ref|XP_003234729.1| tRNA nucleotidyltransferase [Trichophyton rubrum CBS 118892] gi|326463623|gb|EGD89076.1| tRNA nucleotidyltransferase [Trichophyton rubrum CBS 118892] Length = 559 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 110/241 (45%), Gaps = 37/241 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK---------TRYKV-IPTSISYGTI- 80 GG VRD ++ + QDID+ + + + K RYK P G I Sbjct: 76 TGGWVRDKVLGVDSQDIDVGISTMTGYEFGLALKEYLDIPENLERYKAHYPEHALKGVIG 135 Query: 81 ---KIIC---RKKYFDITT------------LRSDLITD-GRYAKVVFTRDWKADSLRRD 121 KI + K+ + TT LR + TD R +V F + D+LRRD Sbjct: 136 GLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGT-AEEDALRRD 194 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 T+NAL+ + G+V D+ G GL+D+ + I+ + +D LR+LR RF + G Sbjct: 195 ATVNALFYNLHTGEVEDFTGMGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLIRFASRLGY 254 Query: 179 --EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + N + IK LKI S ERI EI K+L +PL A++ + G++ IF Sbjct: 255 TIDPNTEESMCDDDIKHSLRLKI-SQERIGIEIEKMLRGPDPLGALMIINRLGLYDTIFS 313 Query: 237 D 237 D Sbjct: 314 D 314 >gi|218961944|ref|YP_001741719.1| Putative polyA polymerase (fragment) [Candidatus Cloacamonas acidaminovorans] gi|167730601|emb|CAO81513.1| Putative polyA polymerase (fragment) [Candidatus Cloacamonas acidaminovorans] Length = 237 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 13/200 (6%) Query: 27 DKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVIPTSI----SYGT 79 DKS GG VRD +++ D+DI LP+ + + + ++ + + S+GT Sbjct: 21 DKSYFAGGCVRDFILDPDATLKGDVDICVE-LPEGGIALAQYLQNRLQASELVIHKSFGT 79 Query: 80 IKIICRKKYFD-ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVID 137 ++ + + + T + + RY KV F D LRRDFTINAL A G+++D Sbjct: 80 ASLLYKNLQLEFVATRKEQYFPNNRYPKVEFG-TLVDDVLRRDFTINALLMAITTGEILD 138 Query: 138 YVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 GLNDL+ I+ + D + ED LR+LR +F + +I+ A K Sbjct: 139 LCQKGLNDLQQGIIRTVKDPNLSFTEDPLRMLRALQFAMRFN-FSIEEKTFKAMRKNAPA 197 Query: 197 LKILSSERIWSEINKLLEAK 216 LKILS I +E+ K+ E++ Sbjct: 198 LKILSHRAIQNELQKIPESQ 217 >gi|313829124|gb|EFS66838.1| tRNA adenylyltransferase [Propionibacterium acnes HL063PA2] gi|315109748|gb|EFT81724.1| tRNA adenylyltransferase [Propionibacterium acnes HL030PA2] Length = 492 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 5/218 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD+ + + ++GTI + Sbjct: 54 LVGGSVRDALMGTLGHDLDFTTDATPDQTEAVLRTLTHATWDIGRAFGTIGARIDDWVVE 113 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R + + + D +RRDFT+NA+ + + D GL D+ Sbjct: 114 VTTFRTDAYQPDSRKPVIAYGETLEEDLVRRDFTVNAMALNAATREFHDPHAGLADIVAG 173 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIWS 207 ++ +D LR++R RF + G D + A++ G + I+S+ER+ Sbjct: 174 KLRTPFPPERSFSDDPLRMMRAARFTSQLGFTVTDE--VRAAMTDMAGRISIISAERVRD 231 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 E+++ L +P + + GI + ++ + L++ Sbjct: 232 ELSRTLLTDHPRAGLDLLVTTGIADHVLPELPALRLER 269 >gi|260549768|ref|ZP_05823985.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter sp. RUH2624] gi|260407285|gb|EEX00761.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter sp. RUH2624] Length = 412 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 18/216 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ Q+ D + P+ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDFLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPQT-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G + FT + D +RRD TINA+ DQ GK+ D GG +DL Sbjct: 60 LARTERKS--GQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQSDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 N+ ++ + +A ED LR+LR RF A Y ++ L+ ++ L L+ Sbjct: 118 NKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMAESGELDALTP 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E ++ L + + + G K +F ++ Sbjct: 175 ERVWKETSRALMETHADIYFQTLRDCGALKHLFPEI 210 >gi|255691214|ref|ZP_05414889.1| polyA polymerase family protein [Bacteroides finegoldii DSM 17565] gi|260623126|gb|EEX45997.1| polyA polymerase family protein [Bacteroides finegoldii DSM 17565] Length = 478 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ + Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKHLGRGAHVSVFKNFGTAQVKYKGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GGL D Sbjct: 94 VEFVGARRESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKGRFGELVDPFGGLED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF G ID D + + K ++I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLG-FYIDDDTFDSLCRNKDRIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P + + G+ IF ++ Sbjct: 213 IADELNKIILSPIPSKGFIDLDRSGLLPLIFPEL 246 >gi|145324048|ref|NP_001077613.1| polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] gi|332192791|gb|AEE30912.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] Length = 478 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 26/249 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +Q DS + +L+ L K + +VGG VRD +++ +D D+ TT V ++F Sbjct: 29 IQRSMIPDSTRM-VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVF- 86 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV---FTRD--------- 112 P G IC DI S T R K F R Sbjct: 87 -------PGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPNKSFRRPAGCDERDYI 139 Query: 113 -WKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 WK + L+RDFT+N L D V+ DY+GG+ DLRN ++ + A+ +ED RILR Sbjct: 140 RWK-NCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARILRA 198 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 R A G ++ D ++ + L L RI EIN +L + ++ ++ G+ Sbjct: 199 IRIAARLG-FSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFGL 257 Query: 231 FKEIFLDVQ 239 EI L +Q Sbjct: 258 M-EILLPIQ 265 >gi|262166486|ref|ZP_06034223.1| tRNA nucleotidyltransferase [Vibrio mimicus VM223] gi|262026202|gb|EEY44870.1| tRNA nucleotidyltransferase [Vibrio mimicus VM223] Length = 403 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 18/196 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V D D + P ++ + K P + T + + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKTKE----EHAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T ++ + G + D LRRD TINA+ D+ G+VID GG DL + Sbjct: 61 ARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDELGQVIDPYGGQRDLAAKV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 ++ + A +ED LR+LR RF AH G E+ + L+ I L L++ Sbjct: 121 LRHVSPA---FVEDPLRVLRVARFAAKLAHLGFTVAEETMQ---LMTDIAQSGELGHLTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E +K L +P Sbjct: 175 ERVWQEWHKSLSTNHP 190 >gi|229121178|ref|ZP_04250415.1| CCA-adding enzyme [Bacillus cereus 95/8201] gi|228662297|gb|EEL17900.1| CCA-adding enzyme [Bacillus cereus 95/8201] Length = 346 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 18/188 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGAPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++G+++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 68 MTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + + + +F + +L + E Sbjct: 120 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSE 179 Query: 241 ISLDQLSQ 248 L + +Q Sbjct: 180 ERLLKATQ 187 >gi|322816012|gb|EFZ24472.1| tRNA nucleotidyltransferase, putative [Trypanosoma cruzi] Length = 526 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 27/232 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIA--TTILPDRVMRIFSK----------------TRYKVIP 72 + GG VRD+L+ L QDIDIA ++ L +F++ + +V P Sbjct: 39 VAGGWVRDALLGLHSQDIDIAIESSDLRHVSGELFAREVSAYQEAMGMAARTVSVIRVNP 98 Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYA 129 + +C + LR D T + R +V + D+LRRDFTINAL+ Sbjct: 99 ELSKHIETATVCVCDTPIEFCALRHDEYTRSNSRIPEVRPATPLE-DALRRDFTINALFY 157 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + +V DY GL DL+ R ++ + +D LR+LR RF GE D + Sbjct: 158 NLHTMEVEDYTSGLEDLQRRVLRCPLEPRETFTDDPLRLLRGIRFVGQLGELGFSLDDSI 217 Query: 189 ASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 K L+ + S ERI E+ K+L +P + + GI +++ L Sbjct: 218 MCCVNKDLLEKMTVKVSRERIGKELVKMLSGPSPEKCVEILLELGILQQVLL 269 >gi|42562367|ref|NP_174130.2| polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] gi|332192789|gb|AEE30910.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] Length = 541 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 26/249 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +Q DS + +L+ L K + +VGG VRD +++ +D D+ TT V ++F Sbjct: 92 IQRSMIPDSTRM-VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVF- 149 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV---FTRD--------- 112 P G IC DI S T R K F R Sbjct: 150 -------PGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPNKSFRRPAGCDERDYI 202 Query: 113 -WKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 WK + L+RDFT+N L D V+ DY+GG+ DLRN ++ + A+ +ED RILR Sbjct: 203 RWK-NCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARILRA 261 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 R A G ++ D ++ + L L RI EIN +L + ++ ++ G+ Sbjct: 262 IRIAARLG-FSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFGL 320 Query: 231 FKEIFLDVQ 239 EI L +Q Sbjct: 321 M-EILLPIQ 328 >gi|33599196|ref|NP_886756.1| tRNA CCA-pyrophosphorylase [Bordetella bronchiseptica RB50] gi|73619755|sp|Q7U391|CCA_BORBR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|33575242|emb|CAE30705.1| tRNA nucleotidyltransferase [Bordetella bronchiseptica RB50] Length = 364 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 28/222 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD L+ L D D + P+ R IP G + + Sbjct: 16 IVGGAVRDGLLGLPAGDRDWVVVGATPE------DMARRGFIPVG---GDFPVFLHPRTK 66 Query: 90 DITTLRSDLITDGRY---------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + L GR A V +D + RRD T+NA+ QG+++D + Sbjct: 67 EEYALARTERKSGRGYKGFTFYTGADVTLEQDLQ----RRDLTVNAIARTPQGELVDPLD 122 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLK 198 G+ D+R R ++ +G+A ED +RILR RF A +G+ +I + L + Sbjct: 123 GVADVRARVLRHVGEA---FAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEAD 179 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 L ER+W E+++ L A+ P + + G + ++ + Sbjct: 180 ALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHD 221 >gi|153827651|ref|ZP_01980318.1| tRNA nucleotidyltransferase [Vibrio cholerae MZO-2] gi|149737871|gb|EDM52776.1| tRNA nucleotidyltransferase [Vibrio cholerae MZO-2] Length = 403 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 90/201 (44%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D RRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLQRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+A I L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMAKIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 + L++ER+W E +K L +P Sbjct: 170 QHLTAERVWQEWHKSLSTHHP 190 >gi|253745016|gb|EET01131.1| tRNA-nucleotidyltransferase, putative [Giardia intestinalis ATCC 50581] Length = 529 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 20/250 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTRYKV 70 L++ L+L NK + + GG VRD L+ DIDIA T + ++ + +R + Sbjct: 29 LLDALALANKHDTTLRVAGGWVRDKLLGYESHDIDIAVDNMTGVELGTLINEYILSRGDI 88 Query: 71 I---------PTSISYGTIKIICRKKY-FDITTLRSDLI-TDGRY-AKVVFTRDWKADSL 118 + P + I Y D+ LR++ D R + VVF ++ D+L Sbjct: 89 VHKMGVVSQNPEKSKHLETACITVCGYDVDLVNLRAESYQEDSRVPSAVVFGTPYE-DAL 147 Query: 119 RRDFTINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTINAL+ + K I D+ G+ DL+N I+ D + +D LRILR RF Sbjct: 148 RRDFTINALFYNIHTKEIEDFTEHGIIDLQNGLIRTPLDCNITFYDDPLRILRAIRFSNR 207 Query: 177 YGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K + A K L+I+S +R E+ ++L +N L+ +++ +F+E+F Sbjct: 208 LDFKLDEKMYQAAENKELTARLQIVSRQRYNKELAEILSGENALSGFQGLFDMHVFEEVF 267 Query: 236 LDVQEISLDQ 245 L + +S+D+ Sbjct: 268 LRILNVSMDK 277 >gi|42571667|ref|NP_973924.1| polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] gi|194272240|gb|ACF37205.1| At1g28090 [Arabidopsis thaliana] gi|222424128|dbj|BAH20023.1| AT1G28090 [Arabidopsis thaliana] gi|332192790|gb|AEE30911.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] Length = 505 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 26/249 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +Q DS + +L+ L K + +VGG VRD +++ +D D+ TT V ++F Sbjct: 56 IQRSMIPDSTRM-VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVF- 113 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV---FTRD--------- 112 P G IC DI S T R K F R Sbjct: 114 -------PGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPNKSFRRPAGCDERDYI 166 Query: 113 -WKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 WK + L+RDFT+N L D V+ DY+GG+ DLRN ++ + A+ +ED RILR Sbjct: 167 RWK-NCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARILRA 225 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 R A G ++ D ++ + L L RI EIN +L + ++ ++ G+ Sbjct: 226 IRIAARLG-FSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFGL 284 Query: 231 FKEIFLDVQ 239 EI L +Q Sbjct: 285 M-EILLPIQ 292 >gi|33594921|ref|NP_882564.1| tRNA CCA-pyrophosphorylase [Bordetella parapertussis 12822] gi|73619756|sp|Q7U367|CCA_BORPA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|33564997|emb|CAE39944.1| tRNA nucleotidyltransferase [Bordetella parapertussis] Length = 364 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 28/222 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD L+ L D D + P+ R IP G + + Sbjct: 16 IVGGAVRDGLLGLPAGDRDWVVVGATPE------DMARRGFIPVG---GDFPVFLHPRTK 66 Query: 90 DITTLRSDLITDGRY---------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + L GR A V +D + RRD T+NA+ QG+++D + Sbjct: 67 EEYALARTERKSGRGYKGFTFYTGADVTLEQDLQ----RRDLTVNAIARTPQGELVDPLD 122 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLK 198 G+ D+R R ++ +G+A ED +RILR RF A +G+ +I + L + Sbjct: 123 GVADVRARVLRHVGEA---FAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEAD 179 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 L ER+W E+++ L A+ P + + G + ++ + Sbjct: 180 ALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHD 221 >gi|330996014|ref|ZP_08319908.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Paraprevotella xylaniphila YIT 11841] gi|329574011|gb|EGG55589.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Paraprevotella xylaniphila YIT 11841] Length = 493 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 13/217 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-----TILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 +VGG VRD + QDID+ T + R+ R V ++GT ++ R Sbjct: 34 VVGGYVRDLFLERPSQDIDVVTVGSGIALAKALAGRLGRGARLSVFS---NFGTAQVKFR 90 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGG 141 + R + + VV + D RRDFTINAL ++ G+++D G Sbjct: 91 GMEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCLNRERFGELVDPFDG 150 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + D+ +R I+ D +D LR++R RF ID + A + ++ +KI+S Sbjct: 151 VWDMEDRLIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDEETFEALERNRERIKIVS 209 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ERI E+NK++ P V + G+ IF ++ Sbjct: 210 RERIADELNKIMMTPTPSKGFVELARCGLLPLIFPEL 246 >gi|229090598|ref|ZP_04221832.1| CCA-adding enzyme [Bacillus cereus Rock3-42] gi|228692741|gb|EEL46466.1| CCA-adding enzyme [Bacillus cereus Rock3-42] Length = 237 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 22/240 (9%) Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALY 128 +P + +GT+ ++ + +++TT R++ + R + V F R + D RRDFT+NA+ Sbjct: 8 VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIA 67 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++G+++D G ++ R I +G+A R ED LR++R RF + + G Sbjct: 68 MTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRF--------VSTLGFS 119 Query: 189 ASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQE 240 K K+ ++ ++ ERI E KLL + + + +F + +L + + Sbjct: 120 LETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYLQMSD 179 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 L + +Q FE I++ F+ I ++ S+ KFS ++I+ + SF N Sbjct: 180 ERLLKATQY--NWDSFETDIEAWAFFLYCIG-EEHPSVFLRQWKFS-NKKIKRYRRSFIN 235 >gi|197335557|ref|YP_002157039.1| multifunctional CCA protein [Vibrio fischeri MJ11] gi|226702092|sp|B5FB77|CCA_VIBFM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|197317047|gb|ACH66494.1| multifunctional CCA protein [Vibrio fischeri MJ11] Length = 407 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 26/200 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+N+ V+D D + P + + +T + P + T +++Y Sbjct: 5 LVGGAVRDSLLNIDVKDKDWVVVGSTPQEMGSLGYQTVGQDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLITDGR-------YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 T R G+ YA+ T + D LRRD TINA+ G++ID G Sbjct: 60 LARTERKS----GQGYKGFTCYAEPDVT--LEEDLLRRDLTINAIAQADNGELIDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ +RT++ + DA ED LR+LR RF A + ++ L+ + L Sbjct: 114 QDIIDRTLRHVSDA---FTEDPLRVLRVARFAARFHHLGFTIAHETMNLMKVLVDSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L++ER+W E K L +++P Sbjct: 171 HLTAERVWQEWQKSLSSQHP 190 >gi|297581070|ref|ZP_06942995.1| tRNA nucleotidyltransferase [Vibrio cholerae RC385] gi|297534896|gb|EFH73732.1| tRNA nucleotidyltransferase [Vibrio cholerae RC385] Length = 403 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 89/198 (44%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPNSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V D D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLED---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG-EKNIDSDGLVASIKAKKGLKIL 200 L + ++ + A +ED LR+LR RF A H G ++ L+ I L+ L Sbjct: 116 LAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAKETMQLMTKITQSGELQHL 172 Query: 201 SSERIWSEINKLLEAKNP 218 ++ER+W E +K L +P Sbjct: 173 TAERVWQEWHKSLSTHHP 190 >gi|119504372|ref|ZP_01626452.1| poly(A) polymerase [marine gamma proteobacterium HTCC2080] gi|119459880|gb|EAW40975.1| poly(A) polymerase [marine gamma proteobacterium HTCC2080] Length = 417 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 18/213 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I ++ L + IVGGAVRD ++ +D D+AT P+ + +F R Sbjct: 14 IRVVEKLRAANFEGYIVGGAVRDLILGGKPKDFDVATNATPEEIKGLFRSARI----IGR 69 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDG-------RYAKVVFTRD-----WKADSLRRDFT 123 + + + ++ ++TT R +++G + K + RD D+ RRD T Sbjct: 70 RFQIVHVRDGREIIEVTTYRGPHVSEGSGKSASKQSDKGLLLRDNVYGTLAEDAARRDLT 129 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INA+Y + V+D + G D+ R ++ +GD R ED +R+LR RF A + +I Sbjct: 130 INAMYYNPIDESVLDQMDGHQDINARLVRILGDPQTRYREDPVRMLRVVRFAAKL-QFDI 188 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 +S+ A L + R++ E KL A Sbjct: 189 ESETESAISACGPLLAEIPPARLFDEFLKLFMA 221 >gi|238898624|ref|YP_002924305.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585844|sp|C4K6G4|CCA_HAMD5 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|229466383|gb|ACQ68157.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 405 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 25/205 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVR+ L+ L V + D + P+ ++ + K K P + T +++Y Sbjct: 5 LVGGAVRNRLLKLPVTERDWVVVGATPEEMLLLGYKKVGKNFPVFLHPET-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + +G + + D LRRD TINA+ + +G +ID G DL Sbjct: 60 LARTERK--MAEGHTGFACYASPDVTLEEDLLRRDLTINAIACNDKGDLIDPYQGEKDLN 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDG--LVASIKAKKGLKILS 201 ++ + +A +ED LR+LR RF FAH G +IDS L+ I L LS Sbjct: 118 QLILRHVSEA---FIEDPLRVLRVARFAAQFAHLG-FSIDSVTLDLMTKISQSGELLTLS 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMY 226 ER+W E K L + +P H+Y Sbjct: 174 PERVWKETEKALLSPSP-----HIY 193 >gi|261364998|ref|ZP_05977881.1| multifunctional CCA protein [Neisseria mucosa ATCC 25996] gi|288566583|gb|EFC88143.1| multifunctional CCA protein [Neisseria mucosa ATCC 25996] Length = 418 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 27/222 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K+ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 9 KTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPDT-- 61 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D +ID Sbjct: 62 ------HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMARDSDNLIID 115 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKG 196 GG DL ++ + A ED +RILR RF A YG E ++ L+ + Sbjct: 116 PFGGQQDLVAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETIKLMRQMVENGE 172 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E+ K L KNP I + G K + +V Sbjct: 173 ADALVAERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEV 214 >gi|256829045|ref|YP_003157773.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfomicrobium baculatum DSM 4028] gi|256578221|gb|ACU89357.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfomicrobium baculatum DSM 4028] Length = 459 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 15/205 (7%) Query: 19 LSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRY--KVIPTS 74 L LN+ ++K+ VGG VRD +DIDI D + + V Sbjct: 8 LERLNESFQNKAFFVGGCVRDKFFGYDSKDIDIEVYGHDFDAICEVVKGIPVVQDVFECG 67 Query: 75 ISYGTIKI--ICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALY 128 S+ +K+ IC DI R ++ T G + V D + S RRDF++NAL Sbjct: 68 KSFNVVKVRLICGAD-LDIAVPRREVSTGGGHKDYVILPDPSMSPEEASARRDFSMNALM 126 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G++ID+ G+ DL+ + ++ IG++ L+D LR+LR +F +G + + + Sbjct: 127 ETFDGEIIDFHNGVQDLKTQRLRAIGNS---FLDDPLRVLRGMQFAGRFGLRVEEHTAYL 183 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 ++ + + L +S ERIW E KLL Sbjct: 184 CALISGRVLA-MSKERIWGEWEKLL 207 >gi|288929668|ref|ZP_06423512.1| polyA polymerase family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329173|gb|EFC67760.1| polyA polymerase family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 490 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 7/217 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + + DID+ +V K+ K S+ ++GT ++ R Sbjct: 47 VVGGYVRDLFLERASNDIDVVVVGSGIQVADALRKSLGKKAHISVFRNFGTAQVKFRGYE 106 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + +V + D RRDFTINA L A+ G++ID GL D Sbjct: 107 IEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAVCLNAENFGQLIDPFDGLYD 166 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR+LR RF I+ + A + + +KI+S ER Sbjct: 167 LEDGIIRTPLDPDITFSDDPLRMLRCVRFATQL-RFFIEDETFDALTRNAERIKIVSGER 225 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I E+NK++ + P V ++ G+ + I ++ + Sbjct: 226 IADELNKIMMTQQPSRGFVELHRCGLLQLILPELTRL 262 >gi|224541970|ref|ZP_03682509.1| hypothetical protein CATMIT_01143 [Catenibacterium mitsuokai DSM 15897] gi|224525110|gb|EEF94215.1| hypothetical protein CATMIT_01143 [Catenibacterium mitsuokai DSM 15897] Length = 460 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 91/197 (46%), Gaps = 7/197 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-F 89 +VGG VRD L+ +DID+ L ++ V ++ + + + Y F Sbjct: 27 LVGGCVRDFLLKRKSKDIDVEVHHLSFAALKEVLSPFGTVQVMGAAFAVVHLSTLEGYEF 86 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKAD--SLRRDFTINA-LYADQQGKVIDYVGGLNDLR 146 + + + V+ D + RRDFTIN+ LY + G VID+ G DL+ Sbjct: 87 ALPRIEEKTGLKHQDFNVIVDPDLPLEKACARRDFTINSMLYDIETGTVIDFYSGQKDLK 146 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERI 205 N ++ H ED LR+LR F + YG K + D+ L SI + GL LS+ERI Sbjct: 147 NGILRATNGNH--FSEDPLRVLRGASFMSRYGFKMDPDTKNLCQSIVEEGGLDTLSTERI 204 Query: 206 WSEINKLLEAKNPLNAI 222 ++E K+L P + Sbjct: 205 YTEYCKILMGLYPSQGL 221 >gi|319785837|ref|YP_004145312.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudoxanthomonas suwonensis 11-1] gi|317464349|gb|ADV26081.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudoxanthomonas suwonensis 11-1] Length = 412 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L D D + +++ + + P + T + + Sbjct: 5 LVGGAVRDELLGLPPGDRDWVVVGATAQQMLDAGFRPVGRDFPVFLHPETGE----EHAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + + D LRRDFTINA+ G ++D GG++D+R+R Sbjct: 61 ARTERKSGRGHRGFVVDADPSVTLEEDLLRRDFTINAIARGDDGTLVDPHGGMDDIRDRV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ +G A ED LR+LR RF A + ++ L+ + L+ L +ER+ Sbjct: 121 LRHVGPA---FTEDPLRVLRAARFMARFAPLGFRVAPETMALMRQMAEAGELETLVAERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E+ + L + P + + G + +V Sbjct: 178 WQELRRALASARPSAFLATLRECGALAVVLPEV 210 >gi|332765305|gb|EGJ95529.1| tRNA nucleotidyltransferase [Shigella flexneri 2930-71] Length = 388 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 26/210 (12%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF-- 173 D RRD TINAL D G++ID GL DL+NR ++ + A ED LR+LR RF Sbjct: 63 DLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRLLRHVSPA---FGEDPLRVLRVARFAA 119 Query: 174 -FAHYGEKNIDSD-GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 +AH G + D L+ + L+ L+ ER+W E L +NP + + G Sbjct: 120 RYAHLGFRIADETLTLMREMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGAL 179 Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 + +F ++ D L V A + +ID+ + ++ LSMA S ++ Sbjct: 180 RVLFPEI-----DALFGV-PAPARWHPEIDTGIHTLM---------TLSMAAMLSPQVDV 224 Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 R+ + C+ K L+ PE+ + +G Sbjct: 225 RFATL----CHDLGKGLTPPELWPRHHGHG 250 >gi|104779694|ref|YP_606192.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas entomophila L48] gi|166233870|sp|Q1IG27|CCA_PSEE4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|95108681|emb|CAK13375.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase] [Pseudomonas entomophila L48] Length = 375 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 122/299 (40%), Gaps = 30/299 (10%) Query: 32 VGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 VGGAVRD L+ V D+D + T+ ++ + + K Sbjct: 6 VGGAVRDRLLGRPVSDVDWLVVGATV------EQMQAQGFRPVGADFPV----FLHPKTG 55 Query: 89 FDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + Y F + D +RRD TINA+ D+ G + D G D Sbjct: 56 EEYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEHGDLHDPYHGKTD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L R ++ + A ED LR+LR RF A Y ++ L+ I A L L Sbjct: 116 LDQRILRHVSLA---FAEDPLRVLRVARFAARYAPMGFRVADETLELMRQISASGELLAL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER W EI + L P I + G KE+ +V + ++SQ A V + Sbjct: 173 TAERSWKEIERALMEDQPQVFIEVLRACGALKELMPEVDALFHGEVSQGSHALDVLQQAA 232 Query: 261 DSL----LRFIVLISWQDKKSILSMAKKFSLPREIRYF--LISFFNCNFNQKTLSIPEI 313 +R+ L+ K I ++ ++F PRE + L+ F+ ++ PE+ Sbjct: 233 AQQQPLAVRWACLLLALGGKQIKTVNQRFKAPRECQELAILVGEFHEQGHRAMELAPEM 291 >gi|126662057|ref|ZP_01733056.1| tRNA nucleotidyltransferase [Flavobacteria bacterium BAL38] gi|126625436|gb|EAZ96125.1| tRNA nucleotidyltransferase [Flavobacteria bacterium BAL38] Length = 471 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 20/234 (8%) Query: 31 IVGGAVRDSLMNLS-VQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 ++GG VRD L+N +DIDI L +V ++ + + +YGT + Sbjct: 28 VIGGFVRDILLNRDHKKDIDIVAVGSGIELALKVSQLIP--FHPKVQVFKNYGTAMLRYD 85 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + R + T +V K D RRDFTINAL A+ G ++D G Sbjct: 86 DIDVEFVGARKESYTHDSRNPLVENGTLKDDQERRDFTINALAFSLNAENFGNLVDPFNG 145 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + DL+N+ IK + +D LR++R RF + I+S+ L A K K + I+S Sbjct: 146 VEDLKNKIIKTPLNPDITYSDDPLRMMRAIRFATQLNFE-IESESLKAISKNKDRINIIS 204 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 ERI E++K+L ++ P +H++ G+ EI L +L+ + E+V Sbjct: 205 GERIVDELHKILASEKPSIGFLHLFQTGLL--------EIILPELTALNNVEEV 250 >gi|298368818|ref|ZP_06980136.1| multifunctional CCA protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282821|gb|EFI24308.1| multifunctional CCA protein [Neisseria sp. oral taxon 014 str. F0314] Length = 416 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 98/222 (44%), Gaps = 28/222 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K+ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 KTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPDT-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D G +ID Sbjct: 55 ------HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDG-LID 107 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKG 196 GG DL ++ + A ED +RILR RF A YG E ++ L+ + Sbjct: 108 PFGGQQDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMRLMRQMVENGE 164 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E+ K L KNP I + G K + +V Sbjct: 165 ADALVAERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEV 206 >gi|224824148|ref|ZP_03697256.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Lutiella nitroferrum 2002] gi|224603567|gb|EEG09742.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Lutiella nitroferrum 2002] Length = 408 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 19/217 (8%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGAVRD L+ L V D D + D R F K P + T + Sbjct: 6 VGGAVRDRLLGLPVTDHDWVVVGATPQDMTARGFRPV-GKDFPVFLHPET--------HE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ Y F D + D RRD TINA+ +D+ G++ID G +DL Sbjct: 57 EYALARTERKVGRGYHGFTFHADRDVTLEEDLARRDLTINAMASDETGQIIDPYHGQDDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 +NR ++ + A ED +R+LR RF A +G ++ L+ ++ A + L +ER Sbjct: 117 KNRILRHVSPA---FAEDPVRVLRLARFAARFGFSIAPETLQLMRTMVANGEVDALVAER 173 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E + L P + + G I +V + Sbjct: 174 VWQETARGLMENQPSRFFLVLRECGALARILPEVDAL 210 >gi|293394301|ref|ZP_06638601.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582] gi|291423279|gb|EFE96508.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582] Length = 416 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 12/196 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ + V D D + P+ ++ + + + P ++ T + Sbjct: 4 KTYLVGGAVRDRLLKIPVFDHDWVVVGATPEELLALGYQQVGRDFPVFLNPNTHEEYALA 63 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + T +S G + D RRD TINA+ G+++D G++DL Sbjct: 64 R----TERKSGQGYTGFVCHAAPDVTLEEDLQRRDLTINAIAQTTDGELVDPYHGVDDLN 119 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF FAH G ++ L+ + L L++ Sbjct: 120 ARVLRHVSAA---FGEDPLRVLRVARFAARFAHLGFTIAPETAALMRQMTDSGELSALTA 176 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E K L++ NP Sbjct: 177 ERVWKETEKALQSDNP 192 >gi|325276033|ref|ZP_08141849.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas sp. TJI-51] gi|324098831|gb|EGB96861.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas sp. TJI-51] Length = 368 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 123/298 (41%), Gaps = 25/298 (8%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID ++ V + +K Y+ + + K + Sbjct: 6 VGGAVRDRLLGRPVSDIDW--LVVGASVEEMLAKG-YRPVGADFPV----FLHPKTGEEY 58 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 R++ + Y F + D +RRD TINA+ D+ G+V D G DL Sbjct: 59 ALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGQVHDPYQGARDLDQ 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ I A L+ L++E Sbjct: 119 RLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLELMRQISASGELQALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R W EI + L P ++ +E+ + LD Q + A + L Sbjct: 176 RSWKEIERALMEAQPQVFFQVLHACAALRELLPE-----LDSAPQALAALEQAAAHHQPL 230 Query: 264 -LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYL 319 +R+ L+ SI ++ ++ PRE + + C + L +P + L L Sbjct: 231 HVRWACLLHQLPPASIKTVNQRLKAPRECQELALLTGECLVQADQALQLPAMSLLALL 288 >gi|258626902|ref|ZP_05721706.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus VM603] gi|258580825|gb|EEW05770.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus VM603] Length = 403 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 18/196 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V D D + P ++ + K P + T + + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKTKE----EHAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T ++ + G + D LRRD TINA+ D+ G++ID GG DL + Sbjct: 61 ARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDESGQLIDPHGGQRDLAAKV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYG----EKNIDSDGLVASIKAKKGLKILSS 202 ++ + A +ED LR+LR RF AH G E+ + L+ I L L++ Sbjct: 121 LRHVSPA---FVEDPLRVLRVARFAAKLAHLGFTVAEETMQ---LMTDIAQSGELGHLTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E +K L +P Sbjct: 175 ERVWQEWHKSLSTNHP 190 >gi|228900216|ref|ZP_04064447.1| CCA-adding enzyme [Bacillus thuringiensis IBL 4222] gi|228859385|gb|EEN03814.1| CCA-adding enzyme [Bacillus thuringiensis IBL 4222] Length = 346 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 8/187 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FL 236 G +I++ A L+ ++ ERI E KLL + + + +F + +L Sbjct: 117 G-FSIETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHLPYL 175 Query: 237 DVQEISL 243 + E L Sbjct: 176 QMSEERL 182 >gi|218780762|ref|YP_002432080.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] gi|218762146|gb|ACL04612.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] Length = 472 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 30/228 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS--ISYGTIKIICRKK- 87 +VGG+VRD ++ ++DID+A + ++ +P + +++ R Sbjct: 21 LVGGSVRDFVLGRPMKDIDLACPNARELAKKLAKANNAAFVPMEKDPAAPCFRVVNRSDP 80 Query: 88 --YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY--------ADQQGKVID 137 + D+ R D D RDFTINA+ D G ++D Sbjct: 81 TDFLDVVRFRGP--------------DIHTDLADRDFTINAMALDLENGFPQDPMGAILD 126 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GL+D+R + I+ +G + +D LRILR FRF + G + I+ L + L Sbjct: 127 PFNGLDDIRKQIIRSLG--RKNLKDDPLRILRAFRFASQLGFE-IEEKTLADCRELAPQL 183 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ERI E+ EA+N + + M+ G+ IF D+ + Q Sbjct: 184 ERTAAERITHELITAFEAENSYSVVRKMWKAGVLLPIFPDIAPMEACQ 231 >gi|332753112|gb|EGJ83496.1| poly A polymerase head domain protein [Shigella flexneri 4343-70] Length = 387 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 26/210 (12%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF-- 173 D RRD TINAL D G++ID GL DL+NR ++ + A ED LR+LR RF Sbjct: 62 DLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRLLRHVSPA---FGEDPLRVLRVARFAA 118 Query: 174 -FAHYGEKNIDSD-GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 +AH G + D L+ + L+ L+ ER+W E L +NP + + G Sbjct: 119 RYAHLGFRIADETLTLMREMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGAL 178 Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 + +F ++ D L V A + +ID+ + ++ LSMA S ++ Sbjct: 179 RVLFPEI-----DALFGV-PAPARWHPEIDTGIHTLM---------TLSMAAMLSPQVDV 223 Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 R+ + C+ K L+ PE+ + +G Sbjct: 224 RFATL----CHDLGKGLTPPELWPRHHGHG 249 >gi|149248981|ref|XP_001528831.1| hypothetical protein LELG_05772 [Lodderomyces elongisporus NRRL YB-4239] gi|146453335|gb|EDK47591.1| hypothetical protein LELG_05772 [Lodderomyces elongisporus NRRL YB-4239] Length = 565 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 105/231 (45%), Gaps = 32/231 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTIL-----------------PDRVMRIFSKTRYKVIPT 73 I GG VRD L+ QDIDIA L P+ MR K+ P Sbjct: 85 ITGGWVRDKLLCNESQDIDIAIDHLLGVDFVNGLQNYLIEQDPEMSMRHVHTI--KMNPL 142 Query: 74 SISYGTIKIICRKKYFDI----TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + C K +DI LRS+ T+ V+ K D++RRD T+NAL+ Sbjct: 143 KSKHLET---CTTKLYDIDLDFVNLRSEEYTEESRVPVIEFGTPKEDAMRRDATLNALFY 199 Query: 130 D-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + + K+ D+ G GL DL++ ++ L+D LRILR RF + K I+ L Sbjct: 200 NLNEQKIEDFTGKGLQDLQDGVLRTPLSPVKTFLDDPLRILRLIRFACKFDFK-IEKKTL 258 Query: 188 VA--SIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 A + +K L +S ERI E+ K L +KNP + +Y+ + K IF Sbjct: 259 EAMMELHNQKALSTKISKERIEIELRKALVSKNPSYGLRLIYHCNLVKSIF 309 >gi|312880840|ref|ZP_07740640.1| Polynucleotide adenylyltransferase region [Aminomonas paucivorans DSM 12260] gi|310784131|gb|EFQ24529.1| Polynucleotide adenylyltransferase region [Aminomonas paucivorans DSM 12260] Length = 391 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 73/167 (43%), Gaps = 25/167 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 +L LS L + +VGGAVRD L+ + D D+AT P+ + +F R P Sbjct: 9 ELARTLSRLGH---PAVLVGGAVRDLLLGRTPHDGDLATAAPPEALEALFPSLRRLDRPG 65 Query: 74 SISY---GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++ G ++ TL+ DL RRD T+NAL D Sbjct: 66 GTTFLLPGPEGLLHETVSTFPGTLQDDLA-------------------RRDLTVNALALD 106 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 +G ++D GG DL ++F G+ R+ ED LR LR RF A Sbjct: 107 PRGLLLDPTGGREDLLAGRLRFTGEGADRLREDPLRALRLARFAAQM 153 >gi|296816052|ref|XP_002848363.1| tRNA nucleotidyltransferase [Arthroderma otae CBS 113480] gi|238841388|gb|EEQ31050.1| tRNA nucleotidyltransferase [Arthroderma otae CBS 113480] Length = 603 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 44/252 (17%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL---------------PDRVMRIFSKTRYKVIPTSIS 76 GG VRD L+ + QDID+ + + P+++ + K Y V Sbjct: 120 TGGWVRDKLLGVDSQDIDVGISTMTGYDFGLALKEYLDIPEKLEKY--KAHYPVHALKGI 177 Query: 77 YGTIKIIC----RKKYFDITTLR-----SDLIT--------DGRYAKVVFTRDWKADSLR 119 G + I + K+ + TT+R DL+ D R +V F + D+LR Sbjct: 178 IGGLHKIAANPKKSKHLETTTIRVFGFDVDLVNLRKETYTDDSRNPQVEFG-TAEEDALR 236 Query: 120 RDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RD T+NAL+ + +V D+ G GL+D+ ++ I+ + +D LR+LR RF + Sbjct: 237 RDATVNALFYNLHTDEVEDFTGRGLSDMESKLIRTPLAPYQTFKDDPLRVLRLIRFASRL 296 Query: 178 GEKNIDSDGLVA----SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 G ID D + IK LKI S ERI EI K+L +PL ++ + G++ Sbjct: 297 G-YTIDPDTETSMYNDDIKHSLKLKI-SQERIGIEIEKMLRGPDPLGSLEIINRLGLYDT 354 Query: 234 IFLDVQ-EISLD 244 IF D Q E ++D Sbjct: 355 IFSDHQSEATVD 366 >gi|116514983|ref|YP_802612.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285621|sp|Q058D0|CCA_BUCCC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116256837|gb|ABJ90519.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 414 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 23/202 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K +VGGA+RD L+N+ V+D D + D K K + G I K Sbjct: 2 KIYLVGGAIRDRLLNIPVRDRDWVVVGIRD------PKEMLKKNYQQVGKGFPVFIHPKT 55 Query: 88 YFDITTLRSDLITDGRYAKVVF---TR-DWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + + R++ + +F +R K D RRD TINA+ D GK+ID+ G Sbjct: 56 HEEYSLARTEKKNGVGHTGFLFDFSSRITLKEDLKRRDLTINAIAQDSSGKIIDFFNGKK 115 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKG 196 D++ + ++ + + ED LR+LR RF A H G +K + L+ S +K Sbjct: 116 DIQKKILRHVSYSFQ---EDPLRVLRIARFAALLSHLGFYIAKKTLSLMKLICS---RKE 169 Query: 197 LKILSSERIWSEINKLLEAKNP 218 L L+ ERIW E K L +NP Sbjct: 170 LLYLTPERIWKETQKGLSTQNP 191 >gi|237749433|ref|ZP_04579913.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter formigenes OXCC13] gi|229380795|gb|EEO30886.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter formigenes OXCC13] Length = 414 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 + D LRRD TINA+ ++G++ID GG D+ NR + + +A ED +RILR RF Sbjct: 71 EEDLLRRDLTINAMAMSEEGEIIDPFGGRRDIENRVFRHVSEA---FAEDPVRILRLARF 127 Query: 174 FAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 A + + ++ + L+ + + L ER+W E+++ L P I M++ G Sbjct: 128 AARFRDFSVAPETMELMKKMVTDGEVDALVPERVWKELSQGLMESMPSRMIQIMHDCGAL 187 Query: 232 KEIFLDVQEI 241 + IF +++ + Sbjct: 188 ERIFPEIEAL 197 >gi|313792633|gb|EFS40719.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA1] gi|313803167|gb|EFS44363.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA2] gi|313839560|gb|EFS77274.1| tRNA adenylyltransferase [Propionibacterium acnes HL086PA1] gi|314963939|gb|EFT08039.1| tRNA adenylyltransferase [Propionibacterium acnes HL082PA1] gi|315079096|gb|EFT51103.1| tRNA adenylyltransferase [Propionibacterium acnes HL053PA2] gi|315081559|gb|EFT53535.1| tRNA adenylyltransferase [Propionibacterium acnes HL078PA1] gi|327334503|gb|EGE76214.1| tRNA adenylyltransferase [Propionibacterium acnes HL097PA1] gi|327457476|gb|EGF04131.1| tRNA adenylyltransferase [Propionibacterium acnes HL092PA1] Length = 492 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 5/218 (2%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+LM D+D T PD+ + + ++GTI + Sbjct: 54 LVGGSVRDALMGTLGHDLDFTTDATPDQTEAVLRTLTHATWDIGRAFGTIGARIDDWVVE 113 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNR 148 +TT R+D D R + + + D +RRDFT+NA+ + + D GL D+ Sbjct: 114 VTTFRTDAYQPDSRKPVIAYGETLEEDLVRRDFTVNAMALNAATREFHDPHAGLADIVAG 173 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIWS 207 ++ +D LR++R RF + G D + A++ G + I+S+ER+ Sbjct: 174 KLRTPFPPERSFSDDPLRMMRAARFTSQLGFTVTDE--VRAAMTDMAGRISIISAERVRD 231 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 E+++ L +P + + GI + ++ + L++ Sbjct: 232 ELSRTLLTDHPRAGLDLLVTTGIADHVLPELPALRLER 269 >gi|212690796|ref|ZP_03298924.1| hypothetical protein BACDOR_00283 [Bacteroides dorei DSM 17855] gi|212666673|gb|EEB27245.1| hypothetical protein BACDOR_00283 [Bacteroides dorei DSM 17855] Length = 500 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + + K + S+ ++GT ++ Sbjct: 56 VVGGYVRDIFLARPSKDIDVVVVGSGIEMAQALGKKLGRGAHVSVFKNFGTAQVKYHDTE 115 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINA L + G+++D GL+D Sbjct: 116 VEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFNGLDD 175 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ RTI+ D +D LR++R RF ID A + K+ + I+S ER Sbjct: 176 LKERTIRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDDTTFEALSRNKERIHIISKER 234 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L A P + + G+ IF ++ Sbjct: 235 IADELNKILLAPIPSKGFIELDRCGLLPLIFPEL 268 >gi|302891489|ref|XP_003044626.1| hypothetical protein NECHADRAFT_94217 [Nectria haematococca mpVI 77-13-4] gi|256725551|gb|EEU38913.1| hypothetical protein NECHADRAFT_94217 [Nectria haematococca mpVI 77-13-4] Length = 569 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 34/236 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL-------------------------PDRVMRIFSKT 66 GG VRD L+N+ DID+A + PD + + + Sbjct: 83 AGGWVRDKLLNIQSHDIDVAINAMTGVPFAQHMCDYCEQPDAIAKHGIGPDDIGSLHNVA 142 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 R + +KI D LR + T D R ++ F + D+ RRD T+N Sbjct: 143 RNPEKSKHLETAMVKIFGLD--LDFVNLRKETYTEDSRNPQMEFGTA-EEDARRRDATVN 199 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 AL+ + ++ D+ GGL+D+ ++ IK + ++D LR+LR RF + + ID Sbjct: 200 ALFYNLHDDRIEDFTGGLSDMDSKIIKTPLEPFQTFMDDPLRVLRLVRFASRL-QFTIDP 258 Query: 185 DG--LVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 D +A+ K + L++ +S ER+ E+ K+L+ +P ++ + +F IF D Sbjct: 259 DTRKFMANPKVLEALRLKISRERVGVELEKMLKGAHPYQSLEFIDELQLFPAIFTD 314 >gi|56477346|ref|YP_158935.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Aromatoleum aromaticum EbN1] gi|73619737|sp|Q5P3T0|CCA_AROAE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|56313389|emb|CAI08034.1| tRNA adenylyltransferase [Aromatoleum aromaticum EbN1] Length = 407 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 26/199 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIP------TSISYGTIKII 83 +VGGAVRD L+ L VQD D + PD ++ + K P T Y + Sbjct: 5 VVGGAVRDRLLGLPVQDHDWVVVGATPDEMLARGFRAVGKDFPVFLHPRTGEEYALARTE 64 Query: 84 CR--KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 + + Y T S +T + D RRD TINA+ D+ G +ID GG Sbjct: 65 RKSGRGYTGFTVHASPDVT------------LEEDLRRRDLTINAMAQDEDGTLIDPYGG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKI 199 DL NR + + +A ED +R+LR RF A + ++ + L+ ++ + Sbjct: 113 RRDLENRVFRHVSEA---FAEDPVRVLRVARFAARFEGFSVAGETLALMRTMVDDGEVDH 169 Query: 200 LSSERIWSEINKLLEAKNP 218 L +ER+W E+ + L P Sbjct: 170 LVAERVWQELARGLMETRP 188 >gi|332827244|gb|EGK00017.1| hypothetical protein HMPREF9455_03661 [Dysgonomonas gadei ATCC BAA-286] Length = 482 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 7/213 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKYF 89 +GG VRD ++ +DIDI T + + ++T K S+ ++GT +I + Sbjct: 39 IGGYVRDIFLHRPSKDIDIVTVGKGIELAQAVARTLGKKAHLSVFKNFGTAQIKYKDTEI 98 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDL 145 + R + VV + D RRDFTINAL D+ G+++D GL D+ Sbjct: 99 EFVGARRESYQRDSRKPVVEDGTLEDDQNRRDFTINALAVCLNKDRFGELLDPFNGLKDM 158 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + I+ D +D LR++R RF + G NI+ A + K + I+S ERI Sbjct: 159 EDLIIRTPLDPDITFSDDPLRMMRAIRFSSQLG-FNIEPGTFDAITRNKDRIGIISGERI 217 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 E+NK++ + P + + G+ IF ++ Sbjct: 218 IDELNKIVLSPKPSVGFLQLDQTGLLAIIFPEL 250 >gi|228907268|ref|ZP_04071128.1| CCA-adding enzyme [Bacillus thuringiensis IBL 200] gi|228852408|gb|EEM97202.1| CCA-adding enzyme [Bacillus thuringiensis IBL 200] Length = 346 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 22/194 (11%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRF---- 112 Query: 178 GEKNIDSDGLVASIKAKKGLKI-------LSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + + G K K+ ++ ++ ERI E KLL + + + + Sbjct: 113 ----VSALGFSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKL 168 Query: 231 FKEI-FLDVQEISL 243 F + +L + E L Sbjct: 169 FSHLPYLQMSEERL 182 >gi|255718757|ref|XP_002555659.1| KLTH0G14432p [Lachancea thermotolerans] gi|238937043|emb|CAR25222.1| KLTH0G14432p [Lachancea thermotolerans] Length = 519 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 105/230 (45%), Gaps = 28/230 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI----FSKTRYK---VIPTSISYGTIKII 83 I GG VRD L+ + D+DIA + + + F + ++ + P SI + K Sbjct: 52 ITGGWVRDKLLGFNSHDLDIAVNTMSGEQLALEINDFLRRNHESCGITPHSI-HKIDKNP 110 Query: 84 CRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130 + K+ + T LRS+ T VV K D+LRRD T+NAL+ + Sbjct: 111 EKSKHLETATTKLFGIDVDFVNLRSEEYTTESRIPVVAFGTPKQDALRRDATLNALFYNI 170 Query: 131 QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 Q ++ D+ G GL DL ++ L+D LR+LR RF + G ID D A Sbjct: 171 QNDEIEDFTGTGLEDLNKGILRTPLPPLQTFLDDPLRVLRLIRFASRLGFV-IDPDTYKA 229 Query: 190 ----SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I G+KI S ER+ E+ K+L+ NPL + + G+ IF Sbjct: 230 MQDPEINKAFGIKI-SRERVGVEMQKILQGPNPLLGLSFIQKAGLDNVIF 278 >gi|153953879|ref|YP_001394644.1| hypothetical protein CKL_1254 [Clostridium kluyveri DSM 555] gi|219854494|ref|YP_002471616.1| hypothetical protein CKR_1151 [Clostridium kluyveri NBRC 12016] gi|146346760|gb|EDK33296.1| Cca [Clostridium kluyveri DSM 555] gi|219568218|dbj|BAH06202.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 399 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 102/389 (26%), Positives = 176/389 (45%), Gaps = 40/389 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-------RIFSKTRYKVIPTSISYG-T 79 K+ IVGGAVRD+++ ++DIDI P+ ++ ++ + G Sbjct: 28 KAYIVGGAVRDAILKNKIKDIDICVNYNPNSIVTQLKGIKYYKYYKNFQTAAVTFQNGVC 87 Query: 80 IKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VID 137 I +I CRK+Y+ G KV D D RRDFTIN+L D G ++D Sbjct: 88 IDLIRCRKEYYK---------RHGDLPKVE-PSDIYDDLYRRDFTINSLAYDIVGNSILD 137 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GG+ D++N+ +K I +R ED RI R ++ YG D + I K+G+ Sbjct: 138 IYGGIGDIKNKVLKKIHFNSYR--EDPTRIFRAVKYCVRYGFYLEDKWEIEKCI--KEGI 193 Query: 198 -KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 +S++RI EI L N + I + IF +D Q + ++ + E + +F Sbjct: 194 FNTISNDRIMKEIYSLCSEINWIENIRLCNDLKIFN---IDGQALEVEYSN--CEKDLIF 248 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 +K + + S +DK + + + L R+++ I +F+ + SI Sbjct: 249 VYKNIDMRILRLFYSLRDKVYVNILIENSILNRKLKN-TIKYFSEELHMVINSIKNTLDN 307 Query: 317 FYLYGDKVMIAKLK-IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 + LY + K IFL+ HY L ++ I ++++ +K L G+D++ GI Sbjct: 308 YKLYQLLRSMNDYKLIFLSWHY-ELNYK----IYNYINNMSTYK---LSLNGNDIIDLGI 359 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDL 404 GK + IL + +N++ + +E L Sbjct: 360 KEGKSIKKILNGVMKIELNTALKWEKEYL 388 >gi|325289973|ref|YP_004266154.1| CBS domain containing protein [Syntrophobotulus glycolicus DSM 8271] gi|324965374|gb|ADY56153.1| CBS domain containing protein [Syntrophobotulus glycolicus DSM 8271] Length = 854 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 90/400 (22%), Positives = 175/400 (43%), Gaps = 35/400 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 ++ +VGG VRD + S QD+D+ + ++++ + +KV+ +GT+KI Sbjct: 475 QAYLVGGFVRDLFLRKSSQDLDVVVEGDSNSFANQLIEVVEV--HKVVQHH-QFGTVKIT 531 Query: 84 CR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDY 138 R + DI R + + + K D RRDFT+NA L A++ G+V+D+ Sbjct: 532 FRDGTHLDIAGSRWEEYDFPGALPTIEESNLKEDLFRRDFTVNAMALCLNANRFGEVVDF 591 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKG 196 GGL DL+ I+F+ + +ED R++R RF Y K + + + +++A Sbjct: 592 YGGLRDLQQGEIRFLHNLS--FIEDPTRMIRAVRFACRYHFKIAKVTREAINTALQANVL 649 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 LKI S ER E+ +L + + + G+ K F +L + E+V Sbjct: 650 LKI-SKERFTEELMLILPEQAYQKMVRELAAFGLMKNWFGREFAWNLAE-----SEEEVK 703 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 +W ++ +++ L+ + I ++ + + + + + + + + Sbjct: 704 DWDLEK--KWLGLLISLENDEIRAVLDRLAFTKSMLKHTLDYVAVRSKLRAAGDCPQEGY 761 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376 L+G K I L H+D +++ + K + G D++ GIP Sbjct: 762 AALFGVKEGIVDLL---------KKHEDLRPLIESYQQALQNLK--MTIRGSDLLAAGIP 810 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G ++G IL W+ +E+ ++LL+ L +S+ Sbjct: 811 EGPEIGRILQDIHLAWLTGKISDFEEERNYLLQILKRNSE 850 >gi|254670092|emb|CBA05004.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha153] gi|316985100|gb|EFV64053.1| poly A polymerase head domain protein [Neisseria meningitidis H44/76] gi|325200128|gb|ADY95583.1| multifunctional CCA protein [Neisseria meningitidis H44/76] Length = 417 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|71423978|ref|XP_812639.1| tRNA nucleotidyltransferase [Trypanosoma cruzi strain CL Brener] gi|70877445|gb|EAN90788.1| tRNA nucleotidyltransferase, putative [Trypanosoma cruzi] Length = 526 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 27/232 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIA--TTILPDRVMRIFSK----------------TRYKVIP 72 + GG VRD+L+ L QDIDIA ++ L +F++ + +V P Sbjct: 39 VAGGWVRDALLGLHSQDIDIAIESSDLRHVSGELFAREVSAYQEAMGMAARTVSVIRVNP 98 Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYA 129 + +C + LR D T + R +V + D+LRRDFTINAL+ Sbjct: 99 ELSKHIETATVCVCDTPIEFCALRHDEYTRSNSRIPEVRPATPLE-DALRRDFTINALFY 157 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + +V DY GL DL+ R ++ + +D LR+LR RF GE D + Sbjct: 158 NLHTMEVEDYTSGLEDLQRRVLRCPLEPRETFTDDPLRLLRGIRFVGQLGELGFSLDDSI 217 Query: 189 ASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 K L+ + S ERI E+ K+L +P + + GI + + L Sbjct: 218 MCCVNKDLLEKMTVKVSRERIGKELVKMLSGPSPEKCVELLLELGILQHVLL 269 >gi|218768243|ref|YP_002342755.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria meningitidis Z2491] gi|73619810|sp|Q9JUB2|CCA_NEIMA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|121052251|emb|CAM08576.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis Z2491] gi|319410490|emb|CBY90851.1| multifunctional CCA protein [includes: CCA-adding enzyme (tRNA nucleotidyltransferase; tRNA adenylyl-/cytidylyl-transferase; tRNA CCA-pyrophosphorylase; tRNA-NT) and 2'-nucleotidase and 2',3'-cyclic phosphodiesterase and phosphatase [Neisseria meningitidis WUE 2594] Length = 417 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|326389216|ref|ZP_08210784.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter ethanolicus JW 200] gi|325994579|gb|EGD53003.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter ethanolicus JW 200] Length = 467 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 25/218 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYF 89 IVGG +RD ++N +D D +++ ++ + K +P GT +++ + Sbjct: 20 IVGGYIRDRILNREAKDYDFVVQEDAEKIAKLAAEKLGGTFVPFMAEKGTYRVVVGDEIL 79 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-----QQGKVIDYVGGLND 144 D T LR + D D RDFT+NA+ + +ID GG+ D Sbjct: 80 DFTNLRGE--------------DIYIDLAHRDFTMNAMAIKLTDYFEFEYIIDPFGGMMD 125 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSE 203 ++NR IK +G + ED LR LR RF A Y + +ID +G A I+ + L K ++ E Sbjct: 126 IKNRKIKHVGVMTFK--EDPLRALRAVRFAATY-KFDID-EGTKAKIREEAALIKQVAPE 181 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 RI +EI +L+ KN + M + + + IF +V ++ Sbjct: 182 RIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKM 219 >gi|262372149|ref|ZP_06065428.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter junii SH205] gi|262312174|gb|EEY93259.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter junii SH205] Length = 413 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 20/192 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D + P++++ + K P + T +++Y Sbjct: 5 LVGGAVRDHLLGHPYHEKDYVVVGATPEQLLADGFQPVGKDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 T R + Y F D + D +RRD TINA+ D+ G + D GG +DL Sbjct: 60 LARTERKSGVG---YHGFQFHTDKTVKLEEDLIRRDLTINAMAMDENGNIYDPYGGQDDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + DA +ED LR+LR RF A Y ++ L++ I + L L+ Sbjct: 117 NQKILRHVSDA---FIEDPLRVLRVARFAARYTAYGFKIAEETLNLMSEIASSGELDALT 173 Query: 202 SERIWSEINKLL 213 ER+W E ++ L Sbjct: 174 PERVWKETSRAL 185 >gi|259907107|ref|YP_002647463.1| tRNA nucleotidyl transferase [Erwinia pyrifoliae Ep1/96] gi|224962729|emb|CAX54184.1| tRNA nucleotidyl transferase [Erwinia pyrifoliae Ep1/96] gi|283476909|emb|CAY72771.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia pyrifoliae DSM 12163] Length = 407 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 55/360 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L++L ++D D + P +++ + + + P + + + Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPQQMLDLGYQQVGRDFPVFLHPDS-----HE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R G V ++ + D RRD T+NA+ D G D GG N Sbjct: 57 EYALARTERKS--GQGYTGFVCYSAPDVTLEQDLARRDLTMNAIAQDTDGNYYDPYGGRN 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL+ R ++ + A ED LR+LR RF A + N ++ L+ ++ L+ Sbjct: 115 DLQRRLLRHVSAA---FKEDPLRVLRVARFAARFAHLNFRIADETLALMQTMTDSGELQQ 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L++ER+W E L+ +P + + G +F + LD L V A + + Sbjct: 172 LTAERVWKETESALQTPSPQVFFQVLRDCGALAVLFPE-----LDNLYGV-PAPAKWHPE 225 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 ID+ + ++ L MA + S +IR F F + K L+ PE Sbjct: 226 IDTGVHTLM---------TLEMAARLSPEIDIR-FATLFHDVG---KALTPPEKWPSHPG 272 Query: 320 YGD------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKKP 361 +G + +L++ AL + + HQ ++ + + W+KP Sbjct: 273 HGPAGVPLVAALCERLRVPNALRDLALLVTEFHDLVHTIQHQSPAQLVALFDRLDAWRKP 332 >gi|149249021|ref|XP_001528850.1| hypothetical protein LELG_05760 [Lodderomyces elongisporus NRRL YB-4239] gi|146453323|gb|EDK47579.1| hypothetical protein LELG_05760 [Lodderomyces elongisporus NRRL YB-4239] Length = 535 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 105/231 (45%), Gaps = 32/231 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTIL-----------------PDRVMRIFSKTRYKVIPT 73 I GG VRD L+ QDIDIA L P+ MR K+ P Sbjct: 55 ITGGWVRDKLLCNESQDIDIAIDHLLGVDFVNGLQNYLIEQDPEMSMRHVHTI--KMNPL 112 Query: 74 SISYGTIKIICRKKYFDI----TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + C K +DI LRS+ T+ V+ K D++RRD T+NAL+ Sbjct: 113 KSKHLET---CTTKLYDIDLDFVNLRSEEYTEESRVPVIEFGTPKEDAMRRDATLNALFY 169 Query: 130 D-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + + K+ D+ G GL DL++ ++ L+D LRILR RF + K I+ L Sbjct: 170 NLNEQKIEDFTGKGLQDLQDGVLRTPLSPVKTFLDDPLRILRLIRFACKFDFK-IEKKTL 228 Query: 188 VA--SIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 A + +K L +S ERI E+ K L +KNP + +Y+ + K IF Sbjct: 229 EAMMELHNQKALSTKISKERIEIELRKALVSKNPSYGLRLIYHCNLVKSIF 279 >gi|315042315|ref|XP_003170534.1| tRNA nucleotidyltransferase [Arthroderma gypseum CBS 118893] gi|311345568|gb|EFR04771.1| tRNA nucleotidyltransferase [Arthroderma gypseum CBS 118893] Length = 604 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 117/252 (46%), Gaps = 38/252 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPD--------RVMRIFSK-TRYKV-IPTSISYGTI- 80 GG VRD ++ + QDID+ + + + I K +YK P G I Sbjct: 122 TGGWVRDKVLGVGSQDIDVGISTMTGYDFGLALKEYLDIPEKLEKYKAHYPEHALKGVIG 181 Query: 81 ---KIIC---RKKYFDITT------------LRSDLITD-GRYAKVVFTRDWKADSLRRD 121 KI + K+ + TT LR + TD R +V F + D+ RRD Sbjct: 182 GLHKIAANPQKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFG-TAEEDAFRRD 240 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 TINAL+ + G+V D+ G GL+D+ ++ I+ + + +D LR+LR RF + G Sbjct: 241 ATINALFYNIHTGEVEDFTGRGLSDMGDKLIRTPMEPYQTFKDDPLRVLRLIRFASRLGY 300 Query: 179 --EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + N + IK LKI S ERI EI K+L +PL ++ + G++ IF Sbjct: 301 TIDPNTEESMYNDDIKHSLRLKI-SQERIGIEIEKMLRGPDPLGSLEIINRLGLYDTIFS 359 Query: 237 D-VQEISLDQLS 247 D + EI +D S Sbjct: 360 DHLSEIDVDTSS 371 >gi|325132575|gb|EGC55268.1| multifunctional CCA protein [Neisseria meningitidis M6190] gi|325138348|gb|EGC60917.1| multifunctional CCA protein [Neisseria meningitidis ES14902] gi|325142488|gb|EGC64892.1| multifunctional CCA protein [Neisseria meningitidis 961-5945] gi|325198375|gb|ADY93831.1| multifunctional CCA protein [Neisseria meningitidis G2136] Length = 417 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|221133361|ref|ZP_03559666.1| metal dependent phosphohydrolase [Glaciecola sp. HTCC2999] Length = 378 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 14/187 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ ++D D + P++++ + K K P + T ++ Sbjct: 2 QTYLVGGAVRDTLLKRRIKDRDYVVVGASPEQLVALGYKPVGKDFPVFLHPET-----QE 56 Query: 87 KYFDITTLRSDLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y R + G ++ V T + D RRD TINA+ D QG +ID G DL Sbjct: 57 EYALARVERKVGLGYGGFSFVTDATVTLEEDLSRRDLTINAMAMDDQGNIIDPFNGQADL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +R K + A +ED LR+LR RF A Y + ++ L+ I L LS Sbjct: 117 AHRIFKHVSPA---FVEDPLRVLRIARFMARYHQYGFTIAPETVELMKKIGHSGELAALS 173 Query: 202 SERIWSE 208 + R+W E Sbjct: 174 APRVWQE 180 >gi|33593986|ref|NP_881630.1| tRNA CCA-pyrophosphorylase [Bordetella pertussis Tohama I] gi|73619757|sp|Q7U358|CCA_BORPE RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|33564060|emb|CAE43328.1| tRNA nucleotidyltransferase [Bordetella pertussis Tohama I] gi|332383403|gb|AEE68250.1| tRNA CCA-pyrophosphorylase [Bordetella pertussis CS] Length = 364 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 28/222 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD L+ L D D + P+ R IP G + + Sbjct: 16 IVGGAVRDDLLGLPAGDRDWVVVGATPE------DMARRGFIPVG---GDFPVFLHPRTK 66 Query: 90 DITTLRSDLITDGRY---------AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + L GR A V +D + RRD T+NA+ QG+++D + Sbjct: 67 EEYALARTERKSGRGYKGFTFYTGADVTLEQDLQ----RRDLTVNAIARTPQGELVDPLD 122 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLK 198 G+ D+R R ++ +G+A ED +RILR RF A +G+ +I + L + Sbjct: 123 GVADVRARVLRHVGEA---FAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEAD 179 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 L ER+W E+++ L A+ P + + G + ++ + Sbjct: 180 ALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHD 221 >gi|15677113|ref|NP_274265.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria meningitidis MC58] gi|73619811|sp|Q9JZ88|CCA_NEIMB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|7226481|gb|AAF41622.1| tRNA nucleotidyltransferase [Neisseria meningitidis MC58] gi|325140529|gb|EGC63050.1| multifunctional CCA protein [Neisseria meningitidis CU385] Length = 417 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|254673906|emb|CBA09690.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha275] Length = 417 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|270263172|ref|ZP_06191442.1| multifunctional CCA protein [Serratia odorifera 4Rx13] gi|270042860|gb|EFA15954.1| multifunctional CCA protein [Serratia odorifera 4Rx13] Length = 414 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 12/193 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ + V D D + P ++ + K P ++ T + + Sbjct: 5 LVGGAVRDSLLEIPVFDRDWVVVGASPSELLAQGYQQVGKDFPVFLNPETHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINA+ G++ID G+ DL+ R Sbjct: 63 --TERKSGQGYTGFTCYAAPDVTLEEDLQRRDLTINAIARGSDGELIDPFHGVADLQARV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSSERI 205 ++ + DA ED LR+LR RF FAH G + A+ G L L++ER+ Sbjct: 121 LRHVSDA---FGEDPLRVLRVARFAARFAHLGFTLAPETAELMRHMARSGELATLTAERV 177 Query: 206 WSEINKLLEAKNP 218 W E K L++++P Sbjct: 178 WKETEKALQSQSP 190 >gi|219681999|ref|YP_002468383.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254813689|sp|B8D6X3|CCA_BUCAT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|219621732|gb|ACL29888.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 414 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 94/199 (47%), Gaps = 24/199 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIIC---- 84 +VGGAVRDSL+NL V+D D ++++ R F + K P + T + Sbjct: 5 LVGGAVRDSLLNLPVKDKDWVVVGGTEKILLERNFQQVG-KDFPVFLHPETHEEYALARK 63 Query: 85 -RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 RK T +D +D + D +RRD TINA+ D+ G ID G Sbjct: 64 ERKSGKGYTGFDTDCNSDV---------TLEEDLIRRDLTINAIAQDEYGNYIDPFQGKK 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYGEKNIDSDGLVASIKAKKG-LKI 199 D+ I+ + ++ +ED LR+LR RF A H G K + L+ I KK L Sbjct: 115 DIECGLIRHVSES---FIEDPLRVLRVARFAATLVHLGFKIAEETMLLMCIIVKKQELSY 171 Query: 200 LSSERIWSEINKLLEAKNP 218 L+S RIW+E K L+ NP Sbjct: 172 LTSNRIWNETEKALKTLNP 190 >gi|224371653|ref|YP_002605817.1| tRNA nucleotidyltransferase/poly(A) polymerase [Desulfobacterium autotrophicum HRM2] gi|223694370|gb|ACN17653.1| tRNA nucleotidyltransferase/poly(A) polymerase [Desulfobacterium autotrophicum HRM2] Length = 435 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 117/268 (43%), Gaps = 29/268 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL+LL + + ++ I GGAVRD + L D DI T + + + F R K++ S Sbjct: 12 ILTLLLENQCRAFIAGGAVRDMVAGLPPADFDIVTDASLETIKQTFKNQRVKIVGKSFH- 70 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVI 136 +C ++ + R D T+ AD +RDFTIN++ D ++ Sbjct: 71 -----VCLVNGIEVASFRGDR-----------TKFPLADLEQRDFTINSMAWDPVTRQIF 114 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D G DL+ + I+F G+ RI ED LR++R RF + G + + IK Sbjct: 115 DPFSGEQDLKRKIIQFTGNGPLRIREDPLRMVRACRFVSQIG--GTLAPETLGDIKTHGR 172 Query: 197 L--KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L ++ ERI EI K + P + G+ +IF + + +D E Sbjct: 173 LVGANVAKERIRMEILKAMAHDRPSLFFRSLQATGLLIQIFPCLDRL-VDLDGGPFHGET 231 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMA 282 VFE + +V + K+ +L +A Sbjct: 232 VFEHSM------MVGDALSPKRPLLRLA 253 >gi|189423357|ref|YP_001950534.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter lovleyi SZ] gi|189419616|gb|ACD94014.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter lovleyi SZ] Length = 398 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 24/210 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRD L +DID+ + P+ + + V I + I I + + Sbjct: 21 IVGGTVRDVLNGKDGEDIDLDAVLTPEELASYGFRPVDPVTSAPIWFRHIPEIGK---IE 77 Query: 91 ITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 IT+L S DL+TD D RRDFT+NA+ G+V+D GG+ DL + Sbjct: 78 ITSLASVDLLTD--------------DLTRRDFTVNAMAMTLDGEVVDLFGGIQDLGQKR 123 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ D + D +RI R FRF + + D+ +++ + +K + ER E+ Sbjct: 124 LRACSDVSFQ--GDPIRIFRAFRFESEEWRMDPDTTRMISDVSWEKSFSCIPVERFSREM 181 Query: 210 NKLLEAKNP---LNAIVHMYNGGIF-KEIF 235 K L P +V M G + E+F Sbjct: 182 VKALGKGEPERFFRNMVEMNVGSTYLPELF 211 >gi|77359558|ref|YP_339133.1| poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125] gi|76874469|emb|CAI85690.1| poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125] Length = 432 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 117/263 (44%), Gaps = 39/263 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 + I +L L G + +VGG +RD L+ +D D+ T P++V ++F R Sbjct: 16 PNAIKVLYRLKDGGFDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFRNCRLIGRR 75 Query: 69 ----------KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 ++I + G + K ++ + L+ D + + + D+ Sbjct: 76 FRLAHIVFGREIIEVATMRGHHEAPEDKNQISQSSEQGQLLRDNVFGSI------EEDAE 129 Query: 119 RRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF---- 173 RRDF+INALY I DY GL ++ + I+ IGD R ED +R+LR RF Sbjct: 130 RRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKL 189 Query: 174 ---FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL-LEAKNPLNAIVHMYNGG 229 A EK + + +AS+ L + R++ EI KL L K N ++ + G Sbjct: 190 DMKIAPNSEKPMTA---LASL-----LDNIPPARLFEEILKLFLNGKAQANYLM-LRKYG 240 Query: 230 IFKEIFLDVQEISLDQLSQVIEA 252 +F +F ++ I LD +EA Sbjct: 241 LFNSLFPELNRI-LDNNPGGLEA 262 >gi|15616686|ref|NP_239898.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681443|ref|YP_002467828.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471118|ref|ZP_05635117.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386685|sp|P57169|CCA_BUCAI RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|254813688|sp|B8D8L9|CCA_BUCA5 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|25288659|pir||H84936 tRNA adenylyltransferase (EC 2.7.7.25) [imported] - Buchnera sp. (strain APS) gi|10038749|dbj|BAB12784.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624286|gb|ACL30441.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085805|gb|ADP65887.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086380|gb|ADP66461.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086958|gb|ADP67038.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 414 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 94/199 (47%), Gaps = 24/199 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIIC---- 84 +VGGAVRDSL+NL V+D D ++++ R F + K P + T + Sbjct: 5 LVGGAVRDSLLNLPVKDKDWVVVGGTEKILLERNFQQVG-KDFPVFLHPETHEEYALARK 63 Query: 85 -RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 RK T +D +D + D +RRD TINA+ D+ G ID G Sbjct: 64 ERKSGKGYTGFDTDCNSDV---------TLEEDLIRRDLTINAIAQDEYGNYIDPFQGKK 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYGEKNIDSDGLVASIKAKKG-LKI 199 D+ I+ + ++ +ED LR+LR RF A H G K + L+ I KK L Sbjct: 115 DIECGLIRHVSES---FIEDPLRVLRVARFAATLVHLGFKIAEETMLLMCIIVKKQELSY 171 Query: 200 LSSERIWSEINKLLEAKNP 218 L+S RIW+E K L+ NP Sbjct: 172 LTSNRIWNETEKALKTLNP 190 >gi|325128353|gb|EGC51237.1| multifunctional CCA protein [Neisseria meningitidis N1568] Length = 417 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 33/225 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFTARYRFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E K L KNP I + G K + +V Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEV 207 >gi|197286208|ref|YP_002152080.1| multifunctional tRNA nucleotidyltransferase/2'-nucleotidase/2',3'-cyclic phosphodiesterase [Proteus mirabilis HI4320] gi|226702074|sp|B4EW50|CCA_PROMH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|194683695|emb|CAR44665.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase and 2',3'-cyclic phosphodiesterase] [Proteus mirabilis HI4320] Length = 407 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 12/216 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P+ +++ + K P + T + + Sbjct: 5 LVGGAVRDQLLNLPVKDRDWVVVGATPETLLQQGYQQVGKDFPVFLHPDTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINA+ +G+ ID G++D+ + Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAIAYSAKGEYIDPYHGIDDIHAKL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + DA ED LR+LR RF A + ++ L+ + L L++ER+ Sbjct: 121 LRHVSDA---FSEDPLRVLRVARFAARFAPLGFTIAPETMSLMQEMTNSGELNALTAERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 W E K L ++ P ++ G K +F ++ + Sbjct: 178 WKETEKALHSQAPQVYFEILHQCGALKILFPEINAL 213 >gi|227357324|ref|ZP_03841681.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Proteus mirabilis ATCC 29906] gi|227162587|gb|EEI47576.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Proteus mirabilis ATCC 29906] Length = 407 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 12/216 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P+ +++ + K P + T + + Sbjct: 5 LVGGAVRDQLLNLPVKDRDWVVVGATPETLLQQGYQQVGKDFPVFLHPDTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINA+ +G+ ID G++D+ + Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAIAYSAKGEYIDPYHGIDDIHAKL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + DA ED LR+LR RF A + ++ L+ + L L++ER+ Sbjct: 121 LRHVSDA---FSEDPLRVLRVARFAARFAPLGFTIAPETMSLMQEMTNSGELNALTAERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 W E K L ++ P ++ G K +F ++ + Sbjct: 178 WKETEKALHSQAPQVYFEILHQCGALKILFPEINAL 213 >gi|189346518|ref|YP_001943047.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobium limicola DSM 245] gi|189340665|gb|ACD90068.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobium limicola DSM 245] Length = 471 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 119/260 (45%), Gaps = 37/260 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCI----VGGAVRDSLMNLSVQDIDIATTILP---DRVM 60 K F + D+ +IL + + D+ I VGG VRD L+ DIDI P R++ Sbjct: 2 KQFTEGDIPDILFRIGELADRENIPCYLVGGYVRDILIERPCTDIDIMIVGEPVAFARII 61 Query: 61 R---------IFSKTRYKVIP-TSISYGTIKII---CRKKYFDITTLRSDLITDGRYAKV 107 R +F + R + T G +KI RK+ +D+ + + + ++ Sbjct: 62 RNELRGKNFVVFERFRTAQLELTDEHAGALKIEVVGARKESYDLDSRKP-------FTEI 114 Query: 108 VFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILED 163 D D RRDFTINAL +D++G + D GL DL R ++ + +D Sbjct: 115 GTIED---DLSRRDFTINALAVSLNSDKRGSLTDNYNGLGDLERRILRTPLEPEQTFSDD 171 Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERIWSEINKLLEAKNPLNAI 222 LR++R RF + G L ++KA + ++I+S ERI E K++ + P + Sbjct: 172 PLRMMRAARFVSQLG--FTPDPALAEAMKAMHERIRIVSRERISQEFFKIMLSPEPSRGL 229 Query: 223 VHMYNGGIFKEIFLDVQEIS 242 +Y+ I +I +V ++ Sbjct: 230 EMLYDTKILGDILPEVTAMA 249 >gi|222054332|ref|YP_002536694.1| poly(A) polymerase [Geobacter sp. FRC-32] gi|221563621|gb|ACM19593.1| poly(A) polymerase [Geobacter sp. FRC-32] Length = 451 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 35/253 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L L + +VGG VRD L+ +D DI T P ++ ++F R Sbjct: 23 PNAVKVLYRLKDNGFTAYLVGGGVRDLLLGREPKDFDIVTDATPLQIKKMFRNCRL---- 78 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD------------------GRYAKVVFTRDW- 113 + + + + ++ T RS + D GR ++ + D Sbjct: 79 IGRRFRLAHLHFQDEIIEVATFRSARLDDVPAEEPAAMDESEGHTLTGRSPLLLKSEDGM 138 Query: 114 ----------KADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162 D++RRDFT+NAL Y +IDYVGGL+DL+ I+ IGD+ R +E Sbjct: 139 VLRDNIFGTPAEDAVRRDFTVNALAYNISDFSLIDYVGGLDDLQRGVIRTIGDSGIRFVE 198 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 D +R++R RF A G + ++ ++ + S R++ E+ KL Sbjct: 199 DPVRMIRAVRFAAMLGFR-VEETTWQTILELSPTVTKASPPRLYEEVLKLFLLGAGERTY 257 Query: 223 VHMYNGGIFKEIF 235 + GIF +F Sbjct: 258 QLLRQSGIFSALF 270 >gi|255011076|ref|ZP_05283202.1| putative polyA polymerase [Bacteroides fragilis 3_1_12] gi|313148884|ref|ZP_07811077.1| tRNA nucleotidyltransferase [Bacteroides fragilis 3_1_12] gi|313137651|gb|EFR55011.1| tRNA nucleotidyltransferase [Bacteroides fragilis 3_1_12] Length = 483 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ Sbjct: 36 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKYHGTE 95 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL ++ G+++D GG+ND Sbjct: 96 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKERFGELVDPFGGMND 155 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ + I+ D +D LR++R RF ID D + + ++ ++I+S ER Sbjct: 156 LKEKVIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNRERIEIISRER 214 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P + + G+ IF ++ Sbjct: 215 IADELNKIMLSPIPSKGFIDLDRSGLLALIFPEL 248 >gi|331006394|ref|ZP_08329703.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC1989] gi|330419818|gb|EGG94175.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC1989] Length = 383 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 23/280 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGA+RD L+N + D + P+ +++ K P + T Sbjct: 2 KTYLVGGAIRDQLLNFPYHEKDWVVVGSSPEEMIKQGYTPVGKDFPVFLHPST------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y F D + D RRD TINA+ G +ID GG Sbjct: 55 -HEEYALARTERKTAPGYKGFTFHTDKSVTLEDDLQRRDLTINAIAQSDDGTLIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + A ED +R+LR RF A Y ++ L+ ++ A+ + Sbjct: 114 QDIIGRCLRHVSSA---FSEDPVRVLRVARFAARYHHLGFSIAKETITLMQNMVAQGETQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQVIEAEQVF 256 L +ER+W E+ K L ++P + ++ EI +L L+ + Sbjct: 171 HLVAERVWQEMQKALTEQHPEIFFTCLEKCHALSDLLPKTDEILKTLSPLNTTL-LTNTA 229 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + D L+RF L + I ++ + ++P E R I Sbjct: 230 KKSGDPLIRFSALCYPFNLDDIDALCQHLTVPNEYRELAI 269 >gi|283457076|ref|YP_003361640.1| PcnA tRNA nucleotidyltransferase [Bifidobacterium dentium Bd1] gi|283103710|gb|ADB10816.1| PcnA tRNA nucleotidyltransferase [Bifidobacterium dentium Bd1] Length = 441 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 120/249 (48%), Gaps = 14/249 (5%) Query: 36 VRDSLMNLSVQDIDIATTILPDR---VMRIFSKTRYKVIPTSISYGTIKIICRKK----- 87 +RD L++ D+D T+ P++ ++R F + + + +GT+ + R++ Sbjct: 1 MRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDM--GRKFGTLGAMRRREDGIEV 58 Query: 88 YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDL 145 ++TT RSD D R +V + + D RRDFT+NA+ + +D GG NDL Sbjct: 59 KVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPFGGANDL 118 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 ++ + +D LR++R RF A G + I+ + A + + I+S+ER+ Sbjct: 119 VKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSDMVERIDIVSAERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 E+ KLL + P I + + G+ +F ++ + L ++ + + VFE + + R Sbjct: 178 RDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRHKDVFEHTMIVVDR 236 Query: 266 FIVLISWQD 274 + L + D Sbjct: 237 AVALETGPD 245 >gi|325204225|gb|ADY99678.1| multifunctional CCA protein [Neisseria meningitidis M01-240355] Length = 417 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 97/228 (42%), Gaps = 33/228 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVG-----KDFPVFLHPET-- 54 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T Y F D + D +RRD TINA+ D GK+ID Sbjct: 55 ------HEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKA 193 GG DL ++ + A ED +RILR RF A Y E+ I L+ + Sbjct: 109 PFGGQRDLAAGILRHVSPA---FAEDPVRILRTARFTARYRFEIAEETIK---LMRQMVE 162 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L +ER+W E K L KNP I + G K + +V + Sbjct: 163 NGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNAL 210 >gi|218783041|ref|YP_002434359.1| polynucleotide adenylyltransferase region [Desulfatibacillum alkenivorans AK-01] gi|218764425|gb|ACL06891.1| Polynucleotide adenylyltransferase region [Desulfatibacillum alkenivorans AK-01] Length = 896 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 18/212 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD +M+ +D D+ R F++ + + +GT II Sbjct: 499 EAFLVGGFVRDLVMSHKNEDFDVVVEGDGIAFARRFAQVHGYRVHSHSEFGTAVIIMEDG 558 Query: 88 Y-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN--ALYADQQ--GKVIDYVGGL 142 + D+ + R + VV T K D RRDFT+N A+ +++ G +IDY G Sbjct: 559 FKIDVASARFEYYASPASLPVVETSSLKMDLYRRDFTVNTMAIQINEKSFGTLIDYFGAQ 618 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--- 199 D++ + I+ + + +ED R+ R RF YG S G + S K +K+ Sbjct: 619 RDIKAKAIRVLHNL--SFVEDPTRVFRAIRFEQRYGF----SIGKLTSNLIKNAVKMDFF 672 Query: 200 --LSSERIWSEINKLLEAKNPLNAIVHM--YN 227 LS R++SE+ +LE +NP+ A+ M YN Sbjct: 673 RHLSGRRLFSELKLILEDENPIGAVDRMAGYN 704 >gi|171690554|ref|XP_001910202.1| hypothetical protein [Podospora anserina S mat+] gi|170945225|emb|CAP71336.1| unnamed protein product [Podospora anserina S mat+] Length = 567 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 34/234 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPTSISY--------GTIKI 82 GG VRD L+ + DID A L K R Y IP + G + Sbjct: 96 AGGWVRDKLLGIKSHDIDTAINNLTGEA--FVGKLRDYVEIPGNKQLHNLMDSDIGRLHT 153 Query: 83 ICRK----KYFDITTLR-------------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + R K+ + +T++ + R +V F + + D+ RRD T+N Sbjct: 154 VARNPDKSKHLETSTIKLCGLDVDFVNLRKETYCENSRNPEVEFGKA-EEDAARRDATVN 212 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID- 183 AL+ + Q G+V D VGGL DL I+ + ++D LR+LR RF + G K ID Sbjct: 213 ALFYNLQTGEVEDLVGGLPDLGAGIIRTPMEPLQTFMDDPLRVLRLVRFASRLGFK-IDK 271 Query: 184 -SDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ ++A + LKI +S ERI E+ K+L+ K+P+ ++ + G++ +F Sbjct: 272 AAEEVMADENVLRNLKIKISRERIGVELEKMLKGKHPVESLRLINRLGLYHAVF 325 >gi|322514670|ref|ZP_08067698.1| multifunctional CCA protein [Actinobacillus ureae ATCC 25976] gi|322119368|gb|EFX91477.1| multifunctional CCA protein [Actinobacillus ureae ATCC 25976] Length = 424 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+NL V+D D + P++++ + P + T +++Y Sbjct: 5 LVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 R + + +G + D +RRD TINA+ D G++ D GG DL N Sbjct: 60 LARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGKQDLANH 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A + ++ L+ + A L L++ER Sbjct: 120 LLRHISPA---FSEDPLRVLRVARFSARFHSLGFKIAPETVKLMQEMTACGELAHLTAER 176 Query: 205 IWSEINKLLEAKNP 218 +W E K NP Sbjct: 177 VWLETQKAFATDNP 190 >gi|228964610|ref|ZP_04125718.1| CCA-adding enzyme [Bacillus thuringiensis serovar sotto str. T04001] gi|228795041|gb|EEM42539.1| CCA-adding enzyme [Bacillus thuringiensis serovar sotto str. T04001] Length = 346 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 7/156 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ + R + V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 G +I++ A L+ ++ ERI E K+L Sbjct: 117 G-FSIETKTKQAIETYGHLLEHIAIERITVEFEKML 151 >gi|325299813|ref|YP_004259730.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides salanitronis DSM 18170] gi|324319366|gb|ADY37257.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides salanitronis DSM 18170] Length = 473 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 109/235 (46%), Gaps = 19/235 (8%) Query: 18 ILSLLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 I SL+++ D+ C +VGG VRD +N +DID+ + K Sbjct: 11 IFSLISQTADELGLECYVVGGYVRDIFLNRPSKDIDVVVVGSGIQTAEALGKRLGPKAHV 70 Query: 74 SI--SYGTIKIICRKKYFDITT----LRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 S+ ++GT ++ K+FD R + + VV + D RRDFTINAL Sbjct: 71 SVFHNFGTAQV----KFFDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAL 126 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G++ID GGL+DL+ I+ D +D LR+LR RF I+ Sbjct: 127 AVCMNKARFGELIDPFGGLDDLKQGIIRTPLDPDITFSDDPLRMLRCIRFATQLN-FYIE 185 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + A + ++ +KI+S ERI E+NK+L + P V + G+ + IF ++ Sbjct: 186 DETFNALERNRERIKIISYERIKDELNKILLSPIPSKGFVDLDRCGLLELIFPEL 240 >gi|157164540|ref|YP_001467081.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Campylobacter concisus 13826] gi|112800409|gb|EAT97753.1| multifunctional CCA protein [Campylobacter concisus 13826] Length = 390 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 144/306 (47%), Gaps = 40/306 (13%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRY 68 + +S+L SL + +VGG VRD+L+ + D DI I P ++ Sbjct: 25 YKNSELDFFRSLFAPFSKRVYLVGGCVRDALLGREIYDYDIEVYDIKP---------AKF 75 Query: 69 KVIPTSI---SYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFT 123 + TSI G I + K +D+ RS+ T + V + D SLRRDFT Sbjct: 76 DDLMTSIKASGVGKSYFIYKYKNYDLGLPRSESKTGNSHKDFAVSYINDPSLASLRRDFT 135 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NA+ + G+++D+ GG DL ++T++ I + ED LR+LR +F A + Sbjct: 136 VNAMMMNIFNGEILDFHGGKKDLESKTLRHID--SEKFKEDPLRVLRGVQFSAR-----L 188 Query: 183 DSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D +++ K L + LS +RI +E+ K +++ +++ +FKEIF VQ Sbjct: 189 DFSIANKTLELMKTLDLAHLSKDRINTELIKFFRSEHLEKGAFYLFKLSLFKEIF-GVQI 247 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ---DKKSILSMAKKFSLPREIRYFLI- 296 DQ +++ + F +D F+ ++ + D K IL +K LP+ YF I Sbjct: 248 RKNDQFLSELKSARNF---VDDERLFLYMLFGKFELDAKEIL---EKMRLPKS--YFSIL 299 Query: 297 --SFFN 300 FFN Sbjct: 300 KEPFFN 305 >gi|71899852|ref|ZP_00682001.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1] gi|71730369|gb|EAO32451.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1] Length = 416 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 21/201 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ D D + P + + K + P + T + Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMKSLGFKPVGRDFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGG 141 + R++ Y + D + D RRDFTINA+ DQ G +ID GG Sbjct: 57 ---EFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIARDQTNGTLIDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 +NDL R ++ I A ED LR+LR RF A ++ ++ + A L Sbjct: 114 VNDLEQRVLRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLAMMRQMAANGEL 170 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ERIW E+++ L P Sbjct: 171 NSLIPERIWKELSRSLAYTQP 191 >gi|317126719|ref|YP_004100831.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Intrasporangium calvum DSM 43043] gi|315590807|gb|ADU50104.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Intrasporangium calvum DSM 43043] Length = 527 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 13/222 (5%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI---FSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD+ + D+D T D ++ ++ + + +GTI + Sbjct: 83 ALVGGPVRDAFLGRISPDLDFTTNASTDAILAAVVGWADAHWDI---GREFGTIGLRKGD 139 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLND 144 + +IT+ R+D R +V+F + D +RRDFT+NA+ + +D GL D Sbjct: 140 HHIEITSYRADTYDRTSRRPEVMFGDTLEGDLVRRDFTVNAMAIRLPSLEFVDVHDGLAD 199 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKG-LKILSS 202 L R + +D LR++R RF + G E ++ + A++ + G L I+S+ Sbjct: 200 LAARRLMTPAPPEESFADDPLRMMRAARFASQLGFEVAVE---VRAAMTERAGTLAIISA 256 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 ERI E KLL + P + + + G+ E ++ + L+ Sbjct: 257 ERIRDEFTKLLLSPAPRPGLTLLVDTGLADEFLPELPALRLE 298 >gi|28198511|ref|NP_778825.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xylella fastidiosa Temecula1] gi|182681188|ref|YP_001829348.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xylella fastidiosa M23] gi|73619907|sp|Q87DS9|CCA_XYLFT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702094|sp|B2I9I0|CCA_XYLF2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|28056595|gb|AAO28474.1| tRNA nucleotidyl transferase [Xylella fastidiosa Temecula1] gi|182631298|gb|ACB92074.1| Polynucleotide adenylyltransferase region [Xylella fastidiosa M23] gi|307579633|gb|ADN63602.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 416 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 21/201 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ D D + P + + K + P + T + Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMKSLGFKPVGRDFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGG 141 + R++ Y + D + D RRDFTINA+ DQ G +ID GG Sbjct: 57 ---EFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIARDQTNGTLIDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 +NDL R ++ I A ED LR+LR RF A ++ ++ + A L Sbjct: 114 VNDLEQRVLRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLAMMRQMAANGEL 170 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ERIW E+++ L P Sbjct: 171 NSLIPERIWKELSRSLTYTQP 191 >gi|332971517|gb|EGK10467.1| multifunctional CCA protein [Kingella kingae ATCC 23330] Length = 413 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 23/220 (10%) Query: 31 IVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD+L+ +VQD D A+T+L + + P + + Sbjct: 5 LVGGAVRDTLLGKNVQDRDWVVVGAEASTLLAQGFTAVGKDFPIFLHPKTHEEYALARTE 64 Query: 85 RK--KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 RK K + + +D A V +D + RRD TINA+ D+ G +ID GG Sbjct: 65 RKTGKGYTAFAVHAD-------ASVTLEQDLQ----RRDLTINAMAQDEHGSIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 DL+ ++ + A ED +RILR RF A YG ++ L+ + A + L Sbjct: 114 RDLQQGILRHVSPA---FAEDPVRILRTARFAARYGFAIAPETMQLMRDMVAAGEVDALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +ER+W E K L P I + + G + +V+ + Sbjct: 171 AERVWQEFAKGLMECEPRKMIEVLRDCGALAILLPEVEAL 210 >gi|289578319|ref|YP_003476946.1| polynucleotide adenylyltransferase region [Thermoanaerobacter italicus Ab9] gi|297544599|ref|YP_003676901.1| polynucleotide adenylyltransferase region [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528032|gb|ADD02384.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter italicus Ab9] gi|296842374|gb|ADH60890.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 388 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 110/422 (26%), Positives = 179/422 (42%), Gaps = 77/422 (18%) Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDI---------ATTILPDRVMRIF 63 DLI +L ++ K + KS IVGG VRD L+ + DID+ A +L I Sbjct: 9 DLIRLLKEISLKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLKGDIV 68 Query: 64 SKTRYKVIPTSISYGTIKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 ++ S +I II RK+Y++ + F+ + D RRDF Sbjct: 69 VYEAFRTATLSYHNFSIDIISARKEYYECP---------AALPTIEFSNIYD-DMARRDF 118 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHR-ILEDYLRILRFFRFFAHYG-E 179 TINAL D +GK++DY GL DL+ I+ + H + ++D RI R R+ Y E Sbjct: 119 TINALAYDVMEGKILDYFNGLEDLKKGVIRVL---HSKSFIDDPTRIFRAIRYATRYSFE 175 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG----IFKEIF 235 + L+ ++ + +++LS++RI +E+ +L+ I + + G IF EI Sbjct: 176 IEEKTHNLMK--ESIENIRLLSADRIRNELLLVLKEDKAKEMIEKIISYGIDKVIFDEIT 233 Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR------ 289 L+ Q +LD + IE E L RF+VL + ++ I + KK + + Sbjct: 234 LNTQ--NLDTVYTNIEVE---------LYRFLVLFYYLKEEDINEIEKKLRINKIYFKAL 282 Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 + +FL NC N+ I E I K T ++ + Sbjct: 283 KDLFFLREQLNCQ-NKNIRKIRE------------TIDK------------TKEEVLRAI 317 Query: 350 QVLSDIIHWK--KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +V+ K K + G D+ G+PP G +L + IN +E++ L Sbjct: 318 EVMEGEKAEKIIKGKLTVRGKDIKNLGLPPSPLYGELLDKVFEAKINGIITTGEEEIEFL 377 Query: 408 LR 409 R Sbjct: 378 KR 379 >gi|149370611|ref|ZP_01890300.1| tRNA nucleotidyltransferase [unidentified eubacterium SCB49] gi|149356162|gb|EDM44719.1| tRNA nucleotidyltransferase [unidentified eubacterium SCB49] Length = 474 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 8/217 (3%) Query: 29 SCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICR 85 + ++GG VRD L++ +DIDI + + SK S+ SYGT + Sbjct: 29 TYVIGGFVRDYLLDRGDAKDIDIVAVGSGITLAKEVSKLLPGKPNVSVFKSYGTAMLKSS 88 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + R + ++ V + D RRDFTINAL G ++D G Sbjct: 89 NIELEFVGARKESYSENSRNPAVENGTLQDDQNRRDFTINALALSLNEATYGDLLDPFNG 148 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + DL N+ I+ D +D LR+LR RF + I+ + L A + + I+S Sbjct: 149 VEDLHNKIIRTPLDPDITYSDDPLRMLRAIRFATQL-DFTIEKESLEAITRNADRITIIS 207 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ERI +EINK+L A P ++ G+ IF ++ Sbjct: 208 KERIVTEINKILNAPVPSKGFALLHKTGLLPHIFPEL 244 >gi|253998183|ref|YP_003050246.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus sp. SIP3-4] gi|253984862|gb|ACT49719.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus sp. SIP3-4] Length = 407 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 31/268 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L VQD D + P + + K P + T Sbjct: 2 QTFVVGGAVRDALLGLPVQDQDHVVVGSTPAEMEAAGFRRVGKDFPVFLHPDT------- 54 Query: 87 KYFDITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y +V + D + D RRD TINA+ + G +ID G Sbjct: 55 -HEEYALARTERKTAKGYKGFEVHASPDVTLEEDLARRDLTINAIARAEDGSLIDPYHGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKIL 200 DL R ++ + A ED +RILR RF A + E + + L+ + A + L Sbjct: 114 ADLEARILRHVSPA---FAEDPVRILRAARFAARFTEFTLAPETLALMQQMVADGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ K L P + G + IF + LD+L V + Q +I Sbjct: 171 VPERVWQELAKGLMEAKPSRMFEMLRACGALQRIFPE-----LDRLWGVPQPAQ-HHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLP 288 D+ + +++I + + ++ +SLP Sbjct: 225 DTGVHVMMVIDY-------AASQGYSLP 245 >gi|308179175|ref|YP_003918581.1| tRNA adenylyltransferase [Arthrobacter arilaitensis Re117] gi|307746638|emb|CBT77610.1| putative tRNA adenylyltransferase [Arthrobacter arilaitensis Re117] Length = 483 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 3/217 (1%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + D+D T+ P+ +++ S + +GTI + Sbjct: 33 SLVGGPVRDLYLGRVSPDLDFTTSARPEETIKVISGWADNIWDVGREFGTIAFKKGEHTL 92 Query: 90 DITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 ++TT R+D + R V F + D RRDFT+N++ Q +++D G++ L + Sbjct: 93 EVTTYRADAYDKESRKPIVAFGDNLHDDLFRRDFTMNSMALRLPQLELVDPFDGVSSLED 152 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +I+ G +D LR++R RF + + + + A + + I+S+ER+ Sbjct: 153 GSIRTPGAPDISFSDDPLRMMRAARFASQL-KIEVSPEVRKAMSEMTDRIDIISAERVRD 211 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KL+ +P I + G+ ++ +V + L+ Sbjct: 212 ELIKLINGADPRAGINLLVESGLADKVLPEVSALRLE 248 >gi|260909396|ref|ZP_05916104.1| tRNA nucleotidyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260636488|gb|EEX54470.1| tRNA nucleotidyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 490 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 7/217 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + + DID+ +V K+ K S+ ++GT ++ R Sbjct: 47 VVGGYVRDLFLERTSNDIDVVVVGSGIQVADALRKSLGKKAHISVFRNFGTAQVKFRGYE 106 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + +V + D RRDFTINA L A+ GK+ID G+ D Sbjct: 107 IEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAACLNAENFGKLIDPFDGVYD 166 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR+LR RF I+ + A + + +KI+S ER Sbjct: 167 LEDGIIRTPLDPDITFSDDPLRMLRCVRFATQL-RFFIEDETFDALTRNAERIKIISGER 225 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I E+NK++ P V ++ G+ + I ++ + Sbjct: 226 IADELNKIMMTPQPSRGFVELHRCGLLQLILPELTRL 262 >gi|332285799|ref|YP_004417710.1| tRNA CCA-pyrophosphorylase [Pusillimonas sp. T7-7] gi|330429752|gb|AEC21086.1| tRNA CCA-pyrophosphorylase [Pusillimonas sp. T7-7] Length = 391 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 18/190 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD+L+ L D D + P+++ + IP + K+ + Sbjct: 35 IVGGAVRDALLGLPAGDRDWVVVGATPEQM------SSRGFIPVGGDFPVFLHPRSKEEY 88 Query: 90 DITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y F +AD RRD TINA+ G++ID +GG DL Sbjct: 89 ALA--RTERKSGRGYKGFTFYTGADVTLEADLQRRDLTINAIAQAPDGRLIDPLGGQRDL 146 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSE 203 + R ++ +G H +ED +R+LR RF A + E +I + L + + L E Sbjct: 147 QQRILRHVG---HAFIEDPVRLLRLARFAARFHEFSIAPETLALARQLVQDGEVDALVPE 203 Query: 204 RIWSEINKLL 213 R+W E+ K L Sbjct: 204 RVWREVAKGL 213 >gi|303237316|ref|ZP_07323886.1| HDIG domain protein [Prevotella disiens FB035-09AN] gi|302482703|gb|EFL45728.1| HDIG domain protein [Prevotella disiens FB035-09AN] Length = 474 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 7/208 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ V KT K S+ ++GT ++ R Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGISVANELKKTLGKRAHISVFHNFGTAQVKLRGME 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + +V + D RRDFTINA L + G+++D GG++D Sbjct: 94 VEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKEHFGELVDPFGGVDD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR++R RF I+ + A + + +KI+S ER Sbjct: 154 LWDGIIRTPLDPDITFSDDPLRMMRCVRFATQLN-FFIEDETFEALERNAERIKIVSGER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFK 232 I E+NK++ K P + +Y G+ + Sbjct: 213 IADELNKIMATKTPSKGFIDLYRCGLLQ 240 >gi|332878045|ref|ZP_08445775.1| HDIG domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684007|gb|EGJ56874.1| HDIG domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 493 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + QDIDI T + + + + S+ ++GT ++ + Sbjct: 34 VVGGYVRDLFLERPSQDIDIVTVGSGIALAKALAGRLGRGAHLSVFSNFGTAQVKFKGME 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 ++ R + + VV + D RRDFTINAL ++ G+++D G+ D Sbjct: 94 VELVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCLNRERFGELVDPFDGVWD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 + +R ++ D +D LR++R RF ID + A + ++ +KI+S ER Sbjct: 154 MEDRLVRTPLDPDITFSDDPLRMMRCVRFATQLN-FYIDEETFEALERNRERIKIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ P V + G+ IF ++ Sbjct: 213 IADELNKIMMTPTPSKGFVELARCGLLPLIFPEL 246 >gi|294634621|ref|ZP_06713155.1| multifunctional CCA protein [Edwardsiella tarda ATCC 23685] gi|291091951|gb|EFE24512.1| multifunctional CCA protein [Edwardsiella tarda ATCC 23685] Length = 415 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 48/211 (22%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPD--------RVMRIF-------SKTRYKVIPTS 74 +VGGAVRD ++L+ D D + P +V + F SK Y + T Sbjct: 5 LVGGAVRDKYLHLTTHDRDWVVVGATPQCLLAQGYQQVGKDFPVFLHPHSKEEYALARTE 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 G + Y TT + +T + D LRRD TINA+ D G+ Sbjct: 65 RKAG-------QGYTGFTTHFAPDVT------------LEQDLLRRDLTINAMAEDDTGR 105 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-------GEKNIDSDGL 187 +ID GGL+DL+ R ++ + A +ED LR+LR RF A + E ++ L Sbjct: 106 LIDPYGGLDDLQQRWLRHVSPA---FVEDPLRVLRVARFAARFFSLGFRVAEPTLE---L 159 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + + + L L++ER+W E K L P Sbjct: 160 MRQMAQQGELNHLTAERVWLETEKALAGPAP 190 >gi|297543648|ref|YP_003675950.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841423|gb|ADH59939.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 467 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 25/218 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYF 89 IVGG +RD ++N +D D +++ ++ + K +P GT +++ R + Sbjct: 20 IVGGYIRDRILNREAKDYDFVVQENAEKIAKLVAEKLGGTFVPFMAEKGTYRVVVRDEIL 79 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-----QQGKVIDYVGGLND 144 D T L+ + D D RDFT+NA+ + +ID GG+ D Sbjct: 80 DFTNLKGE--------------DIYIDLAHRDFTMNAMAIKLTDYFEFEYIIDPFGGVTD 125 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSE 203 ++NR IK +G + ED LR LR RF A Y + +ID + A I+ + L K ++ E Sbjct: 126 IKNRKIKHVGVMTFK--EDPLRALRAVRFAATY-KFDID-EATKAKIREEAELIKQVAPE 181 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 RI +EI +L+ KN + M + + + IF +V ++ Sbjct: 182 RIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKM 219 >gi|194367187|ref|YP_002029797.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Stenotrophomonas maltophilia R551-3] gi|226702087|sp|B4SIY9|CCA_STRM5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|194349991|gb|ACF53114.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Stenotrophomonas maltophilia R551-3] Length = 406 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 21/221 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ D D + P ++ + P + T + Sbjct: 5 LVGGAVRDRLLQRPAGDRDWVVVGATPAQMEAQGYSAVGRDFPVFLHPKTGE-------- 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGGLND 144 + R++ + Y V D + D RRDFTINA+ D+ G ++D GG+ D Sbjct: 57 EYALARTERKSGRGYRGFVVDADPAVTLEEDLQRRDFTINAIACDEDTGTLVDPYGGVRD 116 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 + R ++ +G A +ED LR+LR RF AH+ + ++ L+ ++ A L L Sbjct: 117 IEQRVLRHVGPA---FVEDPLRVLRAARFMAHFAPLDFTVAPETMDLMRNVAASGELDAL 173 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E+ K L + P + +++ I +++ + Sbjct: 174 VPERVWQELRKALVSAQPSAFLRTLHDAHALGPILPELEAL 214 >gi|256823375|ref|YP_003147338.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kangiella koreensis DSM 16069] gi|256796914|gb|ACV27570.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kangiella koreensis DSM 16069] Length = 411 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V D D P++++ K K P + T + Sbjct: 5 LVGGAVRDKLLGLDVVDHDHVVVGATPEQMLAKGYKEVGKDFPVFLHPKTGE-------- 56 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y V F+ D + D +RRD TINA+ D+QG +ID G DL Sbjct: 57 EYALARTERKSGKGYKGFSVDFSSDITLEQDLIRRDLTINAMAQDEQGNLIDPHNGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKILS 201 ++ ++ + A ED LR+LR RF FAH G D L+ + LK L+ Sbjct: 117 HDKILRHVSPA---FAEDPLRVLRVARFAARFAHLGFIVADETFALMQELSYGDELKHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W+E K L +++P Sbjct: 174 PERVWAETEKALASESP 190 >gi|163802697|ref|ZP_02196588.1| tRNA nucleotidyltransferase [Vibrio sp. AND4] gi|159173585|gb|EDP58405.1| tRNA nucleotidyltransferase [Vibrio sp. AND4] Length = 406 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 26/200 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 5 LVGGAVRDHLLGIDSNDKDWVVVGATPEMMLAQGYTAVGKDFPV--------FLHPKNKE 56 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F + + D +RRD TINA+ D +GK+ D GG NDL Sbjct: 57 EHALARTERKSGAGYTGFECFFDQSVTLEEDLIRRDLTINAMAMDDKGKLYDPYGGQNDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG----EKNIDSDGLVASIKAKKGLK 198 +N+ ++ + A +ED LR+LR RF AH G E+ I L+ + L Sbjct: 117 QNKVLRHVSQA---FIEDPLRVLRVARFAAKLAHLGFNVAEETIQ---LMRDVAESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L+ ER+W E +K L P Sbjct: 171 TLTPERVWQEWHKSLSTSCP 190 >gi|21232836|ref|NP_638753.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767093|ref|YP_241855.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. campestris str. 8004] gi|188990185|ref|YP_001902195.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. campestris str. B100] gi|73619905|sp|Q8P5D4|CCA_XANCP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|81306923|sp|Q4UYN8|CCA_XANC8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702093|sp|B0RNU6|CCA_XANCB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|21114662|gb|AAM42677.1| tRNA nucleotidyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572425|gb|AAY47835.1| tRNA nucleotidyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167731945|emb|CAP50131.1| multifunctional CCA protein [Xanthomonas campestris pv. campestris] Length = 410 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 19/217 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD+L+ D D M+ YK + + + + Sbjct: 5 LVGGAVRDALLGQPAGDRDWVVVGADQAQMQALG---YKPVGKDFPV----FLHPRSGEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDL 145 R++ + Y V D + D LRRDFTINA+ D+ G+V D GG+ DL Sbjct: 58 YALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEASGEVFDPYGGVRDL 117 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + R ++ +G A +ED +R+LR RF A ++ L+ + L L Sbjct: 118 QQRVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFGIAPETAALMREMADSGELDSLV 174 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ER+W E+ ++L + P + +++ G + I ++ Sbjct: 175 PERVWQELRRVLGSAQPSAFLRTLHDTGALRAILPEL 211 >gi|88797582|ref|ZP_01113171.1| tRNA nucleotidyl transferase [Reinekea sp. MED297] gi|88779754|gb|EAR10940.1| tRNA nucleotidyl transferase [Reinekea sp. MED297] Length = 412 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 20/220 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD +NL V+D D + P +++ + K P + T + Sbjct: 5 LVGGAVRDQYLNLPVKDRDWVVVGARPQQLLDLGYKQVGADFPVFLHPQT--------HE 56 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y+ V F D + D RRD TINA+ + G++ D GL DL Sbjct: 57 EYALARTERKSGHGYSGFNVHFDPDVTLEDDLARRDLTINAMAQAENGELFDPYQGLQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + +A ED LR+LR RF A Y ++ L+ S+ L L+ Sbjct: 117 EQKKLRHVTEA---FREDPLRVLRVARFAARYDHLGFTVADETLQLMHSMVTSGELAYLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W+E++K L P + G K +F ++ + Sbjct: 174 PERVWTELSKALTEATPSTFFNILRQCGALKVVFPELDRL 213 >gi|327479266|gb|AEA82576.1| tRNA nucleotidyl transferase [Pseudomonas stutzeri DSM 4166] Length = 391 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 18/195 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ +V ++D VM+ P + + + + Sbjct: 6 VGGAVRDRLLGRAVIEVDWVVVGATPEVMQA-----QGFRPVGADFPVF--LHPQSGEEY 58 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 R++ + Y F + D RRD TINA+ D+QG++ID GG DL+ Sbjct: 59 ALARTERKSGRGYGGFTFHASPEVTLEEDLQRRDLTINAIAEDEQGQLIDPYGGQRDLQA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y E ++ L+ + L L++E Sbjct: 119 RLLRHVSPA---FAEDPLRVLRVARFAARYAELGFRIADETLELMRQLARSGELSALTAE 175 Query: 204 RIWSEINKLLEAKNP 218 R W EI++ L P Sbjct: 176 RSWKEISRALMEPRP 190 >gi|218708444|ref|YP_002416065.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio splendidus LGP32] gi|218321463|emb|CAV17415.1| Multifunctional CCA protein [Vibrio splendidus LGP32] Length = 438 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N+ D D + P + + K P + T + Sbjct: 33 LVGGAVRDKLLNIDSYDRDWVVVGSTPQEMESLGFTAVGKDFPVFLHPKTKE-------- 84 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F D + D +RRD TINA+ D +G++ D G DL Sbjct: 85 EHALARTEKKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQDDKGQLYDPYHGQKDL 144 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLV--ASIKAKKGLKILS 201 +R ++ + DA +ED LR+LR RF A HY + S+ +V + I L L+ Sbjct: 145 SDRILRHVSDA---FVEDPLRVLRVARFAAKLHYLNFTVASETMVMMSEIVQSGELAHLT 201 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E +K L +P Sbjct: 202 AERVWQEWHKSLSTPHP 218 >gi|150025694|ref|YP_001296520.1| tRNA nucleotidyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772235|emb|CAL43711.1| tRNA nucleotidyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 473 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 41/246 (16%) Query: 29 SCIVGGAVRDSLMNLSVQ-DIDIA------------TTILPDR----VMRIFSKTRYKVI 71 S ++GG VRD ++ + DIDI + +LP + V + + + Sbjct: 26 SYVIGGFVRDLILKREFKKDIDIVAVGSGIELALKVSALLPHKPKVQVFKTYGTAMLRFE 85 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY--- 128 T I + + RK+ +++ + R+ ++ +G + D RRDFTINAL Sbjct: 86 DTEIEF----VGARKESYNLES-RNPVVENGT---------LEDDQNRRDFTINALAISL 131 Query: 129 -ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 G+++D GL DL N+TIK D +D LR+LR RF G I+ + L Sbjct: 132 NKTNYGELLDPFDGLTDLENKTIKTPLDPDITYSDDPLRMLRGIRFATQLG-FTIEENSL 190 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 + K + I+S ERI E+NK+L + P + ++ G+ LD+ L L+ Sbjct: 191 NSIAKNTDRINIISGERIVDELNKILSSDKPSIGFLLLFKTGL-----LDIILPELTALN 245 Query: 248 QVIEAE 253 QV E E Sbjct: 246 QVEEIE 251 >gi|325578139|ref|ZP_08148274.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325159875|gb|EGC72004.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 414 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 46/230 (20%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMR-----------IF----SKTRYKVIPTS 74 +VGGAVRD L+ L V+D D + P+ ++ +F S Y + T Sbjct: 5 LVGGAVRDQLLGLPVKDRDWVVVGATPEMLLSQGYQQVGKDFPVFLNPESHEEYALARTE 64 Query: 75 ISYGT--IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 G IC + D TL DLI RRD TINA+ D+ Sbjct: 65 RKSGKGYTGFIC--DFSDEITLEQDLI-------------------RRDLTINAIAQDKD 103 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLV 188 GK+ D G+ D+ R ++ I A ED LR+LR RF A + ++ L+ Sbjct: 104 GKLHDPYHGVEDIHQRILRHISPA---FAEDPLRVLRVARFAARFHHLGFSIAEETLKLM 160 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + + L L++ER+W E K L +P ++ G K +F ++ Sbjct: 161 TELTEQGELAHLTAERVWMETEKALNEPHPEIYFETLHQVGALKVLFPEI 210 >gi|313677488|ref|YP_004055484.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Marivirga tractuosa DSM 4126] gi|312944186|gb|ADR23376.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Marivirga tractuosa DSM 4126] Length = 471 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 13/224 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 ++ +VGG VRD ++ +DID + + I SK +++V ++GT I Sbjct: 26 EAYVVGGYVRDLILKRPSKDIDFVCVGSGIDLAKEVAANIGSKKKFQVFK---NFGTASI 82 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDY 138 + R + +V + D RRDFTINAL + G +ID Sbjct: 83 HHGDWELEFVGARKESYQRDSRKPIVEEGTLEDDQNRRDFTINALAISLNEENYGALIDP 142 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL+ + IK + +D LR++R RF + +I + + IK + LK Sbjct: 143 FGGVKDLKKKIIKTPLEPDVTFSDDPLRMIRAIRFASQLN-FDIAPNTFDSIIKNAERLK 201 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 I+S+ERI E+NK++ + P +Y+ + + F ++ E+ Sbjct: 202 IISAERITDELNKIILTEKPSYGFKLLYHAQLLDKFFPEIVELQ 245 >gi|255027965|ref|ZP_05299951.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J2-003] Length = 117 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 6/111 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T I++ Sbjct: 11 VLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTGIAH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINA 126 GT+ + +++++TT R++ + R ++V F R + D RRDFT+NA Sbjct: 67 GTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNA 117 >gi|121716898|ref|XP_001275945.1| poly(A) polymerase [Aspergillus clavatus NRRL 1] gi|119404102|gb|EAW14519.1| poly(A) polymerase [Aspergillus clavatus NRRL 1] Length = 635 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 8/158 (5%) Query: 89 FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDL 145 D+ LR + TD R ++ F + D++RRD TINAL+ + + KV D+ G G D+ Sbjct: 242 IDLVNLRKETYTDESRNPQMEFGTA-EEDAMRRDATINALFYNLNESKVEDFTGRGFEDM 300 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI---LSS 202 RN+ I+ + + +D LR+LR RF + G NID++ +A + + +S Sbjct: 301 RNKIIRTPLEPYQTFKDDPLRVLRLIRFASRLG-YNIDANTQLAMQNSDISTALKQKISK 359 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ER+ +E+ K+L+ +P A+ + G++ IF + Q+ Sbjct: 360 ERVGTELEKMLKGPDPRGALHLIDQIGLYPTIFANNQD 397 >gi|124003434|ref|ZP_01688283.1| tRNA nucleotidyltransferase [Microscilla marina ATCC 23134] gi|123991003|gb|EAY30455.1| tRNA nucleotidyltransferase [Microscilla marina ATCC 23134] Length = 478 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 27/207 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA------------TTILPDRVMRIFSKTRYKVIPTSI 75 ++ +VGG VRD ++ +DIDI LPD+ + K Sbjct: 26 ETYVVGGFVRDLILKRPSKDIDIVCVGSGIELAKAVAEELPDKPQVNYFK---------- 75 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL----YADQ 131 ++GT +I + + R + +V + D RRDFTINAL A+ Sbjct: 76 NFGTAQIKAQDWELEFVGARKESYQRNSRKPIVENGTLEDDQNRRDFTINALAISLQANN 135 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GG+ L R IK D +D LR++R R FA + +I+ + + Sbjct: 136 YGEVIDPFGGIKHLEQRVIKTPLDPDITFSDDPLRMMRAMR-FATQLKFDIEPNTFESIQ 194 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNP 218 K K+ +KI+S ERI E+NK++ A P Sbjct: 195 KNKERIKIVSQERITVELNKIVAASVP 221 >gi|145297590|ref|YP_001140431.1| multifunctional CCA protein [Aeromonas salmonicida subsp. salmonicida A449] gi|166233840|sp|A4SIG1|CCA_AERS4 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|142850362|gb|ABO88683.1| multifunctional CCA protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 413 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 26/223 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 ++ +VGGAVRD L+ L D D + T+ ++++ + + P + T Sbjct: 2 QTYLVGGAVRDRLLGLPQGDRDHLVVGATV--EQMLALGFSQVGRDFPVFLHPKT----- 54 Query: 85 RKKYFDITTLRSDLITDGR-YAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYV 139 +++Y T R GR Y V + D LRRD TINA+ D++G++ D Sbjct: 55 QQEYALARTERKQ----GRGYTGFVCHASPEVTLEQDLLRRDLTINAIAEDEEGRLHDPY 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKK 195 GG+ DL R ++ + A ED LRILR RF A + + ++ L+ + Sbjct: 111 GGIQDLEQRMLRHVSPA---FAEDPLRILRVARFAARFHAQGFVVAPETLALMREMTDAG 167 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L L+ ER+W E+ K+L + P + G K +F ++ Sbjct: 168 ELAHLTPERVWKELEKVLLGQTPQVFFEVLRECGALKALFPEL 210 >gi|71409152|ref|XP_806937.1| tRNA nucleotidyltransferase [Trypanosoma cruzi strain CL Brener] gi|70870822|gb|EAN85086.1| tRNA nucleotidyltransferase, putative [Trypanosoma cruzi] Length = 526 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 27/232 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIA--TTILPDRVMRIFSK----------------TRYKVIP 72 + GG VRD+L+ L QDIDIA ++ L +F++ + +V P Sbjct: 39 VAGGWVRDALLGLHSQDIDIAIESSDLRHVSGELFAREVSAYQEAMGMAARTVSVIRVNP 98 Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYA 129 + +C + LR D T + R +V + D+LRRDFTINAL+ Sbjct: 99 ELSKHIETATVCVCDTPIEFCALRHDEYTRSNSRIPEVRPATPLE-DALRRDFTINALFY 157 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + +V DY GL DL+ R ++ + +D LR+LR RF GE D + Sbjct: 158 NLHTMEVEDYTSGLEDLQRRVLRCPLEPRETFTDDPLRLLRGIRFVGQLGELGFSLDDSI 217 Query: 189 ASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 K L+ + S ERI E+ K+L +P + + G+ + + L Sbjct: 218 MRCVNKDLLEKMTVKVSRERIGKELVKMLSGPSPEKCVEILLELGVLQHVLL 269 >gi|330812139|ref|YP_004356601.1| tRNA cytidylyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380247|gb|AEA71597.1| putative tRNA cytidylyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 408 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 22/197 (11%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGAVRD L+ + V DID + + + R F P + + K Sbjct: 6 VGGAVRDRLLGIPVTDIDRVVVGATAEEMLARGFR-------PVGADFPVF--LDPKSGE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y VF + D +RRD TINA+ D G + D G DL Sbjct: 57 EYALARTERKSGRGYGGFVFHASPEVTLEEDLVRRDLTINAMAEDDHGNLTDPYHGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILS 201 R ++ + A ED LR+LR RF A Y G K D L+ + L+ L+ Sbjct: 117 EARVLRHVSPA---FAEDPLRVLRVARFAARYAPLGFKVADETLELMRQLSDSGELEALT 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER W EI++ L K P Sbjct: 174 AERSWKEISRALMEKQP 190 >gi|29347385|ref|NP_810888.1| tRNA nucleotidyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|29339285|gb|AAO77082.1| tRNA nucleotidyltransferase [Bacteroides thetaiotaomicron VPI-5482] Length = 502 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICRKKY 88 +VGG VRD + +DID+ + K R + ++GT ++ + Sbjct: 59 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAYVSVFKNFGTAQVKYKGTE 118 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + +V + D RRDFTINA L + G+++D GG+ D Sbjct: 119 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFGGMAD 178 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF ID D + + K ++I+S ER Sbjct: 179 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNKDRIEIISRER 237 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P V + G+ IF ++ Sbjct: 238 IADELNKIILSPIPSKGFVELERSGLLPLIFPEL 271 >gi|253570547|ref|ZP_04847955.1| tRNA nucleotidyltransferase [Bacteroides sp. 1_1_6] gi|251839496|gb|EES67579.1| tRNA nucleotidyltransferase [Bacteroides sp. 1_1_6] Length = 477 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ + Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKYKGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + +V + D RRDFTINA L + G+++D GG+ D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFGGMAD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF ID D + + K ++I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNKDRIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P V + G+ IF ++ Sbjct: 213 IADELNKIILSPIPSKGFVELERSGLLPLIFPEL 246 >gi|269123620|ref|YP_003306197.1| Polynucleotide adenylyltransferase region [Streptobacillus moniliformis DSM 12112] gi|268314946|gb|ACZ01320.1| Polynucleotide adenylyltransferase region [Streptobacillus moniliformis DSM 12112] Length = 577 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 13/237 (5%) Query: 18 ILSLLNK-GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL++LN+ GE +VGGA+RD + D D+AT I + ++ I S+ + I S Sbjct: 12 ILNILNEYGE--GYLVGGALRDIFLGFKPTDFDMATNIPMEELLHILSE--HNPIIISEK 67 Query: 77 YGTIKIICRKKYFDITTLR-SDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 Y I I + +I R + I DGR K F + + D RRDFT+NAL + Sbjct: 68 YQVISIQVDEYKIEIARFRKENGILDGRNPQKFKFVENIEEDLARRDFTVNALAYNNNKG 127 Query: 135 VIDYVGGLNDLRNRTIKFIG-DAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIK 192 +ID G + D+ N + IG D R+ ED RI R + Y K + ++ +++ K Sbjct: 128 LIDKYGSIKDIENLELNIIGEDKALRLAEDNTRIYRALYLVSKYNFKLSCETKKAISNFK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + L + S ++K+L K ++ M + +FK + E+S+D L Sbjct: 188 NHRKLNV-SISGFGRLLDKILFNKYSYKSLKIMLDNDLFK---FFIPELSVDNLDNA 240 >gi|190575848|ref|YP_001973693.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Stenotrophomonas maltophilia K279a] gi|226702088|sp|B2FUP5|CCA_STRMK RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|190013770|emb|CAQ47405.1| putative 2 tRNA nucleotidyltransferase [Stenotrophomonas maltophilia K279a] Length = 406 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 21/221 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ D D + P ++ Y T++ + K Sbjct: 5 LVGGAVRDRLLQRPAGDHDWVVVGATPAQM----EAQGY----TAVGRDFPVFLHPKTGE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGGLND 144 + R++ + Y V D + D RRDFTINA+ D++ G ++D GG+ D Sbjct: 57 EYALARTERKSGRGYRGFVVDADPGVTLEEDLQRRDFTINAIACDEETGTLVDPYGGVRD 116 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 + R ++ +G A +ED LR+LR RF A + ++ L+ I A L L Sbjct: 117 IEQRVLRHVGPA---FVEDPLRVLRAARFMARFAPLGFTVAEETMALMREIAASGELDAL 173 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E+ K L ++ P + +++ I +++ + Sbjct: 174 VPERVWQELRKALVSERPSAFLRTLHDAHALGPILPELEAL 214 >gi|115387873|ref|XP_001211442.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114195526|gb|EAU37226.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 522 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 45/248 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL---------------PDRV-----------MRIFSK 65 GG VRD L+ + QDID+A + P+ + MR Sbjct: 45 TGGWVRDKLLGVDSQDIDVAINTMTGYQFGMRLKEYLDQPENLEKYRTNHANGEMREAIV 104 Query: 66 TRYKVIPTSISYGTIKIICRKKY---FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRD 121 + +K+ ++ + K + D+ LR + TD R ++ F + D++RRD Sbjct: 105 SLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYTDDSRNPQMEFGTA-EEDAMRRD 163 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 TINAL+ + + KV D G G D+R+R I+ + + +D LR+LR RF + G Sbjct: 164 ATINALFYNLNESKVEDLTGRGFEDMRHRIIRTPLEPYQTFKDDPLRVLRLIRFASRLGY 223 Query: 179 ------EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 E+ + + + ++K K +S ER+ +E+ K+L +P A+ + G++ Sbjct: 224 RIDEETERAMQNSDISVALKLK-----ISRERVGTELEKMLRGPDPRGALHFIDRLGLYP 278 Query: 233 EIFLDVQE 240 IF + Q+ Sbjct: 279 TIFTNYQD 286 >gi|163847575|ref|YP_001635619.1| polynucleotide adenylyltransferase region [Chloroflexus aurantiacus J-10-fl] gi|222525428|ref|YP_002569899.1| polynucleotide adenylyltransferase region [Chloroflexus sp. Y-400-fl] gi|163668864|gb|ABY35230.1| Polynucleotide adenylyltransferase region [Chloroflexus aurantiacus J-10-fl] gi|222449307|gb|ACM53573.1| Polynucleotide adenylyltransferase region [Chloroflexus sp. Y-400-fl] Length = 420 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 156/376 (41%), Gaps = 37/376 (9%) Query: 31 IVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTS-ISYGTIKIICRKKY 88 +VGG VRD + L + +DID+A ++++ + I ++GT I Sbjct: 32 LVGGVVRDLWLELPIGRDIDLAVEGDINQLIVPLADAWDGTITARHPAFGTATITVGHWV 91 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSL-----RRDFTINALY------ADQ--QGKV 135 D+ R++ RY K + + L RRDF+INA+ DQ + Sbjct: 92 IDLAQTRTE-----RYPKPAILPEVQPAPLTKDLYRRDFSINAMAVQIIADGDQLLSAPL 146 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID +GG+ DL R ++ + D R +D R+LR R A + + + Sbjct: 147 IDPLGGVADLTARRLRLLHDQSLR--DDPTRLLRGVRLAARLQLTPDAATAAQIADALEA 204 Query: 196 G-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEISLDQLSQVIE- 251 G L +LS ERI +E+ LE +P I G+ + L ++LS+ + Sbjct: 205 GYLALLSPERIQTELCLTLEEPDPAAVIALADQWGLTPHVIPGLHWTPALAERLSRYRQD 264 Query: 252 AEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ D L + +VL D ++ + ++ LP R + + T++ Sbjct: 265 TSEISRLAPDGLVIAGLVLYDLSDD-ALTQVLHRYHLPAPARNLIQDLIALRPHIATIAA 323 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL-FPLTGDD 369 IA + + LHY T I QV+S +H +PL PL GDD Sbjct: 324 ATSPSAIDTLLQPYSIAAIAV---LHYATETS-----IQQVVSRYLHEWRPLRPPLNGDD 375 Query: 370 VVKYGIPPGKKVGNIL 385 + G+P G ++G +L Sbjct: 376 LRHLGVPTGPQIGQLL 391 >gi|313200253|ref|YP_004038911.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus sp. MP688] gi|312439569|gb|ADQ83675.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus sp. MP688] Length = 407 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 31/268 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L VQD D + P + + K P + T Sbjct: 2 QTFVVGGAVRDALLGLPVQDQDHVVVGSTPAEMEAAGFRRVGKDFPVFLHPDT------- 54 Query: 87 KYFDITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y +V + D + D RRD TINA+ + G +ID G Sbjct: 55 -HEEYALARTERKTAKGYKGFEVHASPDVTLEEDLARRDLTINAIARAEDGSLIDPYHGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKIL 200 DL R ++ + A ED +RILR RF A + E + + L+ + A + L Sbjct: 114 ADLEARILRHVSPA---FAEDPVRILRAARFAARFTEFTLAHETLALMQQMVADGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ K L P + G + IF + LD+L V + Q +I Sbjct: 171 VPERVWQELAKGLMEAKPSRMFEMLRACGALQRIFPE-----LDRLWGVPQPAQ-HHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLP 288 D+ + +++I + + ++ +SLP Sbjct: 225 DTGVHVMMVIDY-------AASQGYSLP 245 >gi|326480246|gb|EGE04256.1| tRNA nucleotidyltransferase [Trichophyton equinum CBS 127.97] Length = 533 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 39/242 (16%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY-------------- 77 GG VRD ++ + QDID+ + + + K Y IP ++ Sbjct: 50 TGGWVRDKVLGVDSQDIDVGISTMTGYDFGLALK-EYLDIPENLEKYKAHYPEHALKGVI 108 Query: 78 -GTIKIIC---RKKYFDITT------------LRSDLITD-GRYAKVVFTRDWKADSLRR 120 G KI + K+ + TT LR + TD R +V F + D+LRR Sbjct: 109 GGLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFGT-AEEDALRR 167 Query: 121 DFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D T+NAL+ + G+V D+ G GL+D+ + I+ + +D LR+LR RF + G Sbjct: 168 DATVNALFYNLHTGEVEDFTGTGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLIRFASRLG 227 Query: 179 ---EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + N + IK LKI S ERI EI K+L +PL A+ + G++ IF Sbjct: 228 YTIDPNTEESMCDDDIKHSLRLKI-SQERIGIEIEKMLRGPDPLAALTIINRLGLYDTIF 286 Query: 236 LD 237 D Sbjct: 287 SD 288 >gi|296131529|ref|YP_003638779.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulomonas flavigena DSM 20109] gi|296023344|gb|ADG76580.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulomonas flavigena DSM 20109] Length = 507 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 11/225 (4%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI---KIICRK 86 +VGG VRD+ + D+D+ T PD + + +GT+ + R+ Sbjct: 57 ALVGGPVRDAFLGRPSNDLDLTTPATPDEAEPLLAAWGDAHWDIGREFGTVGARRFAGRR 116 Query: 87 KY-----FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYV 139 ++TT R+D R V F + D RRDFT+NA+ V +D Sbjct: 117 GATQDVVVEVTTYRTDAYDPTSRKPLVEFGDTLEGDLSRRDFTVNAMAVRVPDLVFVDPF 176 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GL DL ++ D +D LR++R RF A G + ++ D A ++ ++I Sbjct: 177 DGLADLAAGVLRTPIDPRRSFDDDPLRMMRAARFVAQLGFR-LEDDTRAAIVEMASRIEI 235 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +S+ER+ E+ KLL + +P + + G+ + ++ + L+ Sbjct: 236 VSAERVRDELTKLLLSPHPRAGLEVLVETGLADHVLPELPALRLE 280 >gi|110834913|ref|YP_693772.1| tRNA cytidylyltransferase [Alcanivorax borkumensis SK2] gi|122959348|sp|Q0VMU8|CCA_ALCBS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|110648024|emb|CAL17500.1| tRNA cytidylyltransferase [Alcanivorax borkumensis SK2] Length = 410 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 21/263 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ L V + D + P + + K P + T +++Y Sbjct: 5 LVGGAVRDSLLGLPVTEKDWVVVGATPKEMEANGFRPVGKDFPVFLHPKT-----QEEYA 59 Query: 90 DITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R G + T + D +RRD TINA+ + G++ID G DL+ R Sbjct: 60 LARTERKSGHGYGGFTFHAASTVSLEEDLIRRDLTINAMAQARGGEIIDPFNGRVDLKAR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + A ED LR+LR RF A Y + D+ L+ + L L +ER Sbjct: 120 LLRHVSPA---FAEDPLRVLRVARFAARYHWLGFQVADDTLMLMKQLSDSGELGYLVAER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E ++ L ++P ++ G +F + L L V + EQ ++D+LL Sbjct: 177 VWKETSRALMERDPQVFFQVLHRCGALHALFPE-----LAALDGVPQPEQ-HHPEVDTLL 230 Query: 265 RFIVLISWQDKKSILSMAKKFSL 287 + + Q + LS+ +++L Sbjct: 231 HQFLCLK-QAARLGLSLNARYAL 252 >gi|328773569|gb|EGF83606.1| hypothetical protein BATDEDRAFT_86022 [Batrachochytrium dendrobatidis JAM81] Length = 544 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 32/231 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-TRYKVIPTSISYGTIKIIC----R 85 + GG VRD L+ + DIDIA + F++ + ++ S+S GTI I R Sbjct: 58 VAGGWVRDKLLGRTSDDIDIAIDTMKGEP---FARHLKEYMLSKSMSLGTIYTIQVNPDR 114 Query: 86 KKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 K+ + T LR+++ + +V D+LRRD TIN L+ + Sbjct: 115 SKHLETATVRVLGRDLDFVHLRTEIYDENSRNPIVEFGTPLQDALRRDITINTLFYNLNT 174 Query: 134 K-VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID------SD 185 + V D G GL+DL I+ + ++D LR+LR RF +G + + SD Sbjct: 175 REVEDMTGHGLDDLSAGLIRTPLEPLSTFVDDPLRVLRVIRFATRFGYEIVSNILKAASD 234 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 L+ + KK +S ERI E+NK+LE +P+ AI + + + +FL Sbjct: 235 DLIKTAFIKK----ISRERIGVELNKMLEGPDPVRAIKILQDIEFYPLVFL 281 >gi|289577360|ref|YP_003475987.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter italicus Ab9] gi|289527073|gb|ADD01425.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter italicus Ab9] Length = 467 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 25/218 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYF 89 IVGG +RD ++N +D D +R+ ++ + K +P GT +++ + Sbjct: 20 IVGGYIRDRILNREAKDYDFVVQENAERIAKLAAEKLGGTFVPFMAEKGTYRVVVGDEIL 79 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-----QQGKVIDYVGGLND 144 D T LR + D D RDFT+NA+ + +ID GG+ D Sbjct: 80 DFTNLRGE--------------DIYIDLAHRDFTMNAMAIKLTDYFEFEYIIDPFGGVTD 125 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSE 203 ++NR IK +G + ED LR LR RF A Y + +ID + A I+ + L K ++ E Sbjct: 126 IKNRKIKHVGVMTFK--EDPLRALRAIRFAATY-KFDID-EATKAKIREEAELIKQVAPE 181 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 RI +EI +L+ KN + M + + + IF +V ++ Sbjct: 182 RIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKM 219 >gi|113461336|ref|YP_719405.1| tRNA nucleotidyltransferase [Haemophilus somnus 129PT] gi|112823379|gb|ABI25468.1| tRNA nucleotidyltransferase [Haemophilus somnus 129PT] Length = 417 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L ++D D + + ++ + K P ++ T R++Y Sbjct: 6 LVGGAVRDQLLGLPIKDRDWLVVGSTAEELLSQGYQQVGKDFPVFLNPNT-----REEY- 59 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y + F D + D +RRD TINA+ D G+ D G+ DL Sbjct: 60 --ALARTERKSGTGYTGFICDFNPDITLEQDLMRRDLTINAIAQDMAGQYHDPYNGIADL 117 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ I A ED LR+LR RF A Y + ++ L+ I L+ LS Sbjct: 118 KKGILRHISPA---FAEDPLRVLRVARFAARYHQLGFKIAPNTLALMKKIANNGELRQLS 174 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E K L ++P Sbjct: 175 PERVWQETEKALHEQDP 191 >gi|291288320|ref|YP_003505136.1| Polynucleotide adenylyltransferase region [Denitrovibrio acetiphilus DSM 12809] gi|290885480|gb|ADD69180.1| Polynucleotide adenylyltransferase region [Denitrovibrio acetiphilus DSM 12809] Length = 385 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 165/382 (43%), Gaps = 50/382 (13%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS-ISY-G 78 +L G D + VGG VRD L++ +QDID + + F+ + +P+ + + Sbjct: 18 MLEGGYD-AYFVGGCVRDILLDREIQDIDF---VCFSHDYKEFATAVKEAVPSVWVEFKD 73 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 I+++ DI+ R + + + D RDFTIN L D G + Sbjct: 74 NIRLVRGNTEIDISKPRGETLEE--------------DLQMRDFTINNLAMDTGGNIF-- 117 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G DL ++ I+ I ++ R +D LRILR FRF A G SD ++ +K L Sbjct: 118 -GDRTDLDSKVIRHISESTFR--DDPLRILRSFRFMAQLG--FTASDATFEKMRQEKELL 172 Query: 199 ILS-SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 S SERI++E++KL + +++ M G+F I + + D+++ VF Sbjct: 173 SQSASERIFNELDKLFKGDYACDSLRQMEETGVFSIITGGMSLDAYDEMAACAGRGLVFF 232 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQ--KTLSIPEI 313 +S ++K +A K + P ++ IS F + K I Sbjct: 233 AS-----SLFCRLSVEEKN---KLAGKLNFPNSMKKKAERISVFTKELAELLKNSDDTAI 284 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI----LQVLSDI--IHWKKPLFPLTG 367 +KL Y Y D++ I L + + D C + +V+S + I++ P L G Sbjct: 285 RKLIYKYPDELDDG---IRLYIIRSGCDGVDQCRVEDDEFRVMSQLPYINFNLPE-RLNG 340 Query: 368 DDVVKYGIPPGKKVGNILVHCK 389 + + G+ PG +G IL K Sbjct: 341 AVLQELGVAPGPMMGEILKEVK 362 >gi|326473531|gb|EGD97540.1| tRNA nucleotidyltransferase [Trichophyton tonsurans CBS 112818] Length = 605 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 39/242 (16%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY-------------- 77 GG VRD ++ + QDID+ + + + K Y IP ++ Sbjct: 122 TGGWVRDKVLGVDSQDIDVGISTMTGYDFGLALK-EYLDIPENLEKYKAHYPEHALKGVI 180 Query: 78 -GTIKIIC---RKKYFDITT------------LRSDLITD-GRYAKVVFTRDWKADSLRR 120 G KI + K+ + TT LR + TD R +V F + D+LRR Sbjct: 181 GGLHKIAANPEKSKHLETTTIRVFGFDVDLVNLRKETYTDTSRNPQVEFG-TAEEDALRR 239 Query: 121 DFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D T+NAL+ + G+V D+ G GL+D+ + I+ + +D LR+LR RF + G Sbjct: 240 DATVNALFYNLHTGEVEDFTGTGLSDMEAKLIRTPLAPYQTFKDDPLRVLRLIRFASRLG 299 Query: 179 ---EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + N + IK LKI S ERI EI K+L +PL A+ + G++ IF Sbjct: 300 YTIDPNTEESMCDDDIKHSLRLKI-SQERIGIEIEKMLRGPDPLAALTIINRLGLYDTIF 358 Query: 236 LD 237 D Sbjct: 359 SD 360 >gi|262404759|ref|ZP_06081314.1| tRNA nucleotidyltransferase [Vibrio sp. RC586] gi|262349791|gb|EEY98929.1| tRNA nucleotidyltransferase [Vibrio sp. RC586] Length = 403 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 97/221 (43%), Gaps = 28/221 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYK-----VIPTSISYGTIKIIC 84 +VGGAVRD L+ L V D D + P ++ + K + P S + Sbjct: 5 LVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLSAGFQAVGKDFPVFLHPKSKEEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T YA V + D LRRD TINA+ D G++ID GG D Sbjct: 65 RKTGVGYTGFAC------HYAPDVTLEE---DLLRRDLTINAMAQDNSGQLIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDSDGLVASIKAKKGL 197 L + ++ + A +ED LR+LR RF A H G E+ + L+ I L Sbjct: 116 LAAKVLRHVSLA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQ---LMTDIAQSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + L++ER+W E +K L +P + + N G + +V Sbjct: 170 QHLTAERVWQEWHKSLSTHHPEVFLQVLRNCGALAVVLPEV 210 >gi|220933517|ref|YP_002512416.1| tRNA nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7] gi|254813701|sp|B8GUR8|CCA_THISH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|219994827|gb|ACL71429.1| tRNA nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7] Length = 409 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 20/223 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V++ D + +++ + + + P + T Sbjct: 2 KTYLVGGAVRDELLGLPVRERDWVVVGATAAQMLDLGYRQVGRDFPVFLHPET------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y V + + D LRRD TINA+ D+ G +ID G Sbjct: 55 -HEEHALARTERKTAPGYRGFVVHAEPDVTLEEDLLRRDLTINAMARDEAGGLIDPFNGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNID-SDGLVASIKAKKGLK 198 DL R ++ + A ED +RILR RF FAH G + D + L+ + A + Sbjct: 114 ADLEARLLRHVSPA---FAEDPVRILRVARFAARFAHLGFRVADETRALMRRMVAAGEVD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L ER+W E+ + L +P + + G +F +++ + Sbjct: 171 ALVPERVWQEMERALGEGSPATFFEVLRDCGALAVLFPEIERL 213 >gi|310766309|gb|ADP11259.1| tRNA nucleotidyl transferase [Erwinia sp. Ejp617] Length = 407 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 84/360 (23%), Positives = 150/360 (41%), Gaps = 55/360 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L++L ++D D + P +++ + + + P + + + Sbjct: 2 KTYLVGGAVRDELLDLPLKDKDWVVVGASPQQMLDLGYQQVGRDFPVFLHPDS-----HE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R G V ++ + D RRD T+NA+ D G D GG N Sbjct: 57 EYALARTERKS--GQGYTGFVCYSAPDVTLEQDLARRDLTMNAIAQDTDGNYYDPYGGRN 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL+ R ++ + + ED LR+LR RF A + N ++ L+ ++ L+ Sbjct: 115 DLQRRLLRHVSAS---FKEDPLRVLRVARFAARFAHLNFRIADETLALMQTMTDSGELQQ 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L++ER+W E L+ +P + + G +F + LD L V A + + Sbjct: 172 LTAERVWKETESALQTPSPQVFFQVLRDCGALAVLFPE-----LDNLYGV-PAPAKWHPE 225 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 ID+ + ++ L MA + S +IR F F + K L+ PE Sbjct: 226 IDTGVHTLM---------TLEMAARLSPEIDIR-FATLFHDVG---KALTPPEKWPSHPG 272 Query: 320 YGD------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKKP 361 +G + +L++ AL + + HQ ++ + + W+KP Sbjct: 273 HGPAGVPLVAALCERLRVPNALRDLALLVTEFHDLVHTIQHQSPAQLVALFDRLDAWRKP 332 >gi|326794305|ref|YP_004312125.1| tRNA cytidylyltransferase [Marinomonas mediterranea MMB-1] gi|326545069|gb|ADZ90289.1| tRNA cytidylyltransferase [Marinomonas mediterranea MMB-1] Length = 371 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 20/195 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V D D + P+ ++ + K P + T ++ Sbjct: 4 KVYLVGGAVRDALLGLPVYDKDWVVVGSTPEEMVSEGYQAVGKQFPVFLHPKT-----KE 58 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 +Y R + + Y + F D + D RRD TINA+ D G++ D G Sbjct: 59 EY---ALARKERKSGQGYTGFICDFAPDISLEEDLERRDLTINAIAKDNNGRLYDPFHGT 115 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ NR + + DA +ED LR+LR RF A + + ++ L+ I A L Sbjct: 116 QDIENRVFRHVSDA---FVEDPLRVLRVARFAARFQDFEFRIANETLRLMKDISASGELT 172 Query: 199 ILSSERIWSEINKLL 213 L+ ER+W E K L Sbjct: 173 ALTPERVWKETEKAL 187 >gi|171464272|ref|YP_001798385.1| tRNA cytidylyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193810|gb|ACB44771.1| tRNA cytidylyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 376 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 22/210 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGA+RD+LM L V DID ++ V + +K Y+ + + + + Sbjct: 6 VGGAIRDTLMGLPVHDIDY--VVVGSSVEEMIAKG-YRPVGKDFPV----FLHPETQAEY 58 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYAD------QQGKVIDYVGG 141 R++ T Y F D + D RRD TINA+ + Q G +ID G Sbjct: 59 ALARTERKTGTGYKGFHFYADPAVTLEQDLERRDLTINAMAQEVGADGKQFGPIIDPYNG 118 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--SIKAKKGLKI 199 DL + + + DA ED LR+LR RF A + E + + L A +I L Sbjct: 119 QEDLAAKIFRHVSDA---FAEDPLRLLRIARFAARFPEFRVADEALSALKAIVQSGELGA 175 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 L +ERIW E+ + + A P++ + N G Sbjct: 176 LPAERIWQELARGIVATKPMHLFQVLLNTG 205 >gi|170718506|ref|YP_001783718.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Haemophilus somnus 2336] gi|168826635|gb|ACA32006.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Haemophilus somnus 2336] Length = 417 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L ++D D + + ++ + K P ++ T R++Y Sbjct: 6 LVGGAVRDQLLGLPIKDRDWLVVGSTAEELLSQGYQQVGKDFPVFLNPKT-----REEYA 60 Query: 90 DITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T R S G + D +RRD TINA+ D G+ D G+ DL+ Sbjct: 61 LARTERKSGTGYTGFICDFNPNITLEQDLMRRDLTINAIAQDMAGQYHDPYNGIADLKKG 120 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ I A ED LR+LR RF A Y + D+ L+ I L+ LS ER Sbjct: 121 ILRHISPA---FAEDPLRVLRVARFAARYHQLGFKIAPDTLALMKKIANNGELRQLSPER 177 Query: 205 IWSEINKLLEAKNP 218 +W E K L ++P Sbjct: 178 VWQETEKALHEQDP 191 >gi|239994852|ref|ZP_04715376.1| poly(A) polymerase I [Alteromonas macleodii ATCC 27126] Length = 439 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 116/261 (44%), Gaps = 30/261 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ LN +S +VGG VRD LM +D D+ T P+++ +F R Sbjct: 15 ANALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVVTNATPEQIKGLFRNCRL---- 70 Query: 73 TSISYGTIKIICRKKYFDITTLR-----SDLITDGRYAKVVFTRDW-------------K 114 + I+ ++ ++ T R +D + K V RD + Sbjct: 71 IGRRFRLAHIVFGREIIEVATFRGHHQETDEDENLPKGKAVAKRDAHGQLVRDNVFGTIE 130 Query: 115 ADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFT NA+Y AD V D+ GL + R ++ IGD R ED +R+LR Sbjct: 131 EDAERRDFTFNAMYYSVADF--TVKDFANGLAAIEKREVELIGDPETRYREDPVRMLRAV 188 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF G + I++ A IK+ L+ + R++ E KL + + ++ G+ Sbjct: 189 RFAVKLGMR-IEAK-TAAPIKSLANLLQNIPPARLFEETLKLFLSGKGEETFLMLHEYGL 246 Query: 231 FKEIFLDVQEISLDQLSQVIE 251 + +F + D+ S+ ++ Sbjct: 247 IEPLFPQLTPFLKDENSREMQ 267 >gi|258566840|ref|XP_002584164.1| predicted protein [Uncinocarpus reesii 1704] gi|237905610|gb|EEP80011.1| predicted protein [Uncinocarpus reesii 1704] Length = 421 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 30/220 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVIPTSISYGTIKIICRKKYFD 90 GG VRD L+ + DID A T R+ +I K+++ + + T I +G D Sbjct: 56 TGGWVRDKLLGVESHDIDAAFT----RLKQIPEKSKHLETVATKI-FGL--------EVD 102 Query: 91 ITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLRN 147 + LR + +D R+ ++ F + D+LRRD T+NAL+ + + D+ G G+ DL + Sbjct: 103 LVNLRKETYSDHSRHPEMEFG-TAEEDALRRDATLNALFYNLHTSSIEDFTGRGIADLNS 161 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSDGLVASIKAKKGLKIL 200 + I+ + +D LR+LR RF + G E + D + +++K K + Sbjct: 162 QLIRTPLQPYQTFKDDPLRVLRLIRFSSRLGYRIHPLTEDAMQHDDIKSALKLK-----I 216 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 S ERI +E+ K+L+ +PL A+ + ++ IF + Q+ Sbjct: 217 SQERIGAEVEKMLKGPDPLRALHIIDRLKLYDTIFANHQD 256 >gi|307265683|ref|ZP_07547236.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919327|gb|EFN49548.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter wiegelii Rt8.B1] Length = 467 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 25/218 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYF 89 IVGG +RD ++N +D D +++ ++ + K +P GT ++ + Sbjct: 20 IVGGYIRDRILNREAKDYDFVVQEDAEKIAKLAAEKLGGTFVPFMAEKGTYRVAVGDEIL 79 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-----QQGKVIDYVGGLND 144 D T LR + D D RDFT+NA+ + +ID GG+ D Sbjct: 80 DFTNLRGE--------------DIYIDLAHRDFTMNAMAIKLTDYFEFEYIIDPFGGMMD 125 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSE 203 ++NR IK +G + ED LR LR RF A Y + +ID +G A I+ + L K ++ E Sbjct: 126 IKNRKIKHVGVMTFK--EDPLRALRAVRFAATY-KFDID-EGTKAKIREEAALIKQVAPE 181 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 RI +EI +L+ KN + M + + + IF +V ++ Sbjct: 182 RIMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKM 219 >gi|282880095|ref|ZP_06288815.1| hypothetical protein HMPREF9019_1920 [Prevotella timonensis CRIS 5C-B1] gi|281305968|gb|EFA98008.1| hypothetical protein HMPREF9019_1920 [Prevotella timonensis CRIS 5C-B1] Length = 475 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 12 DSDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 D+D+ + +S + D C +VGG VRD + DID+ V + K Sbjct: 14 DNDIFHQISAVADHLDVECYVVGGYVRDLFLERPSNDIDVVVVGSGIEVAAALKQKLGKR 73 Query: 71 IPTSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 S+ ++GT +I + + R + + VV + D RRDFTINAL Sbjct: 74 AYLSVFRNFGTAQIKFKGMEIEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINALA 133 Query: 129 A----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 + G+++D GL DL + I+ D +D LR+LR RF + I+ Sbjct: 134 VCLNQARFGELVDPFDGLLDLEDGLIRTPLDPDITFSDDPLRMLRCVRFSTQL-KFFIED 192 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + + +KI+S ERI E+NK++ +P + +Y G+ + I ++ +++D Sbjct: 193 ETFEALRRNAERIKIVSGERIADELNKIMMTDHPSRGFIELYRCGLLELILPEL--VAMD 250 Query: 245 QL 246 Q+ Sbjct: 251 QV 252 >gi|154249575|ref|YP_001410400.1| polynucleotide adenylyltransferase region [Fervidobacterium nodosum Rt17-B1] gi|154153511|gb|ABS60743.1| Polynucleotide adenylyltransferase region [Fervidobacterium nodosum Rt17-B1] Length = 883 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 20/293 (6%) Query: 15 LINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 ++N+L L+ N+ +VGG VRD ++N+ DIDI + ++ + Sbjct: 467 IVNLLRLIGFFGNEMNSPVYVVGGFVRDLILNIENYDIDIVVEGNGIEFAKYMAQQLNAI 526 Query: 71 IPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA--- 126 + + T +I + + D+ T R++ V K D RRDFTINA Sbjct: 527 VVPYEKFFTANVIFKDGFKIDVATARTEYYESPGELPQVDISTIKKDLYRRDFTINAMAI 586 Query: 127 -LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NID 183 L G + D+ DL I+ + + +ED R++R RF YG K N Sbjct: 587 KLNPQDFGTLYDFFNCQKDLEEGVIRVLHNLS--FVEDPTRMIRAVRFEQRYGFKMENYT 644 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF------LD 237 D L ++ +++ L+ +S RI EI K+LE KNP+ AI M + K IF Sbjct: 645 LDLLKKNL-SERYLERVSGSRIRQEIEKILEEKNPIKAIKRMAELDMIKHIFPKTYYTAT 703 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 ++E + + ++ FE D + + + DK ++ M K+ P++ Sbjct: 704 MEEKFVRLFKFIPYLKERFENFNDFYAVSTIFLEYYDKSTLEEMRAKYGYPKK 756 >gi|109900234|ref|YP_663489.1| poly(A) polymerase [Pseudoalteromonas atlantica T6c] gi|109702515|gb|ABG42435.1| poly(A) polymerase [Pseudoalteromonas atlantica T6c] Length = 415 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 21/224 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD L+ +D D+ T P++V +F R + ++ ++ Sbjct: 11 QAFLVGGCVRDILLGKKPKDFDVTTDATPEQVKELFRNCRL----IGRRFRLAHVVFGRE 66 Query: 88 YFDITTLRSDLITDGRYAKV----------VFTRD-----WKADSLRRDFTINALYADQQ 132 ++ T R + AK RD + D+ RRDFT+NA+Y + Sbjct: 67 VIEVATFRGHHPVEDENAKEQNLSKQSDHGQLLRDNVFGSIEEDAERRDFTVNAMYYNIA 126 Query: 133 GKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 I D+ G+ ++ R I IGD R ED +R+LR RF G K I + Sbjct: 127 DYSIHDFANGMEAVKKRQITMIGDPATRYREDPVRMLRAVRFAVKLGMK-ISPETAKPMY 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + + R++ E+ KLL + L + G+F+++F Sbjct: 186 ELAPLMANIPPARLFEEVLKLLLSGQGLETYKLLNEFGLFEQLF 229 >gi|45201214|ref|NP_986784.1| AGR118Wp [Ashbya gossypii ATCC 10895] gi|44986068|gb|AAS54608.1| AGR118Wp [Ashbya gossypii ATCC 10895] Length = 533 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 26/228 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT--SISYGTIKI---ICR 85 I GG VRD L+ L +D+DI +L + F+ + + + G KI R Sbjct: 79 IAGGWVRDKLLGLESEDLDI---VLNNVTGERFASGLVEFLKAQGGSARGVHKIQRNPAR 135 Query: 86 KKYFDITT------------LRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 K+ + T LRS+ + R V F + D++RRD T+NAL+ + Sbjct: 136 SKHLETCTTTVLGVAVDFVNLRSETYAEESRVPTVEFGTPLQ-DAMRRDATLNALFYNIL 194 Query: 132 QGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLV 188 +G V D+ G GL DL ++ A L+D LR+LR RF A +G + N +G+ Sbjct: 195 EGVVEDFTGRGLADLAAGVLRTPMPARQTFLDDPLRVLRLVRFAARFGFELDNEAREGMA 254 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 ++ +S ER+ +E++K+L + +PL + + G+ +FL Sbjct: 255 YRDIHAALVRKISRERVGTELHKMLTSADPLYGLRLLCEAGLLPAVFL 302 >gi|332662823|ref|YP_004445611.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Haliscomenobacter hydrossis DSM 1100] gi|332331637|gb|AEE48738.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Haliscomenobacter hydrossis DSM 1100] Length = 471 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 7/216 (3%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRK 86 + +VGG VRD L+ +DIDI + + + + V ++ +GT I R Sbjct: 27 AYVVGGYVRDRLLARPSKDIDIVCVGSGIELAQRVAGELHPVPRITVFQRFGTAMIKHRD 86 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGL 142 + R + V + D RRDFTINAL G +ID GL Sbjct: 87 LEVEFVGARKESYRHDSRKPAVEDGSLEDDQNRRDFTINALAVSLNEADFGNIIDPFDGL 146 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL + I+ D +D LR++R RF + I+ A K+ +KI+S+ Sbjct: 147 GDLERKIIRTPLDPGKTFSDDPLRMMRAIRFATQL-DFVIEPATFKAIDTYKERIKIISA 205 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ERI +E+NK+++A P +++ G+ + IF ++ Sbjct: 206 ERIATELNKIIQAPKPSVGFKLLFDSGLLQLIFPEM 241 >gi|110638922|ref|YP_679131.1| tRNA adenylyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110281603|gb|ABG59789.1| tRNA adenylyltransferase (tRNA nucleotidyl transferase) [Cytophaga hutchinsonii ATCC 33406] Length = 479 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICR 85 ++ IVGG VRD +M+ +DID + + + + + I ++GT I Sbjct: 30 ETYIVGGYVRDLIMDRDNKDIDFVCLGSGIELAQKVAANMGEHVQVHIFKTFGTAMINAG 89 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + R + V + + D LRRDFTINAL + G+++D G Sbjct: 90 DTELEFVGARKESYDFNSRKPTVESGTLEDDQLRRDFTINALAICLNKARFGELVDPFDG 149 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 ++D++ + IK DA +D LR++R RF +I++ A K L I+S Sbjct: 150 VSDIKRKIIKTPQDALLTFSDDPLRMIRAVRFATQLN-FDIEAATFQAIATNKDRLSIVS 208 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ERI E+NK++ A P +Y G+ K+IF Sbjct: 209 MERISQELNKIISAPVPSYGFKLLYISGVLKDIF 242 >gi|159109517|ref|XP_001705023.1| tRNA-nucleotidyltransferase, putative [Giardia lamblia ATCC 50803] gi|157433100|gb|EDO77349.1| tRNA-nucleotidyltransferase, putative [Giardia lamblia ATCC 50803] Length = 536 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 26/253 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT---------TILPDRV------ 59 L+ ++ +NK + + GG VRD L+ DIDIA TI+ + + Sbjct: 29 LLAAIASVNKQDTTLRVAGGWVRDKLLGYESHDIDIAVDNMTGVELGTIINEYITSQGET 88 Query: 60 ---MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKA 115 M + S+ K S T I D+ LR++ + R + Sbjct: 89 VHKMGVVSQNPEK----SKHLETACITVCGYDVDLVNLRAESYQETSRVPSAIKFGSPHE 144 Query: 116 DSLRRDFTINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+LRRDFT+NAL+ + + I D+ G GL DL++R I+ D + +D LRILR RF Sbjct: 145 DALRRDFTVNALFYNINTREIEDFTGQGLADLKSRLIRTPLDYNITFYDDPLRILRAIRF 204 Query: 174 FAHYG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 G E + V S + L+I+S +R E+ ++L + L + ++N IF+ Sbjct: 205 SKRLGFELDKKMYQAVESKELTARLQIVSRQRYNKELIEILSGETALCGLRGLFNMHIFE 264 Query: 233 EIFLDVQEISLDQ 245 EIFL + S+++ Sbjct: 265 EIFLYILNTSMNK 277 >gi|123438730|ref|XP_001310144.1| polyA polymerase family protein [Trichomonas vaginalis G3] gi|121891901|gb|EAX97214.1| polyA polymerase family protein [Trichomonas vaginalis G3] Length = 458 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 136/288 (47%), Gaps = 29/288 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT-----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 I GG VRD +M DIDIA + D ++ + +V+ ++ +K I Sbjct: 42 IAGGWVRDKIMGRENDDIDIAISGATCNEFSDAMVSVLGPNTKRVL-LEANHEQLKHIDT 100 Query: 86 KK-------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 + + DI +LRS L ++G + + +L RDF++NA++ + Q K+ D Sbjct: 101 ARVCLFHDFWLDICSLRSALYSEGEKLEGTAV----SAALHRDFSMNAIFFNVQTMKIED 156 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK-AKKG 196 YV G+ ++++ I+ A +D RI+R FRF A Y K ID A K Sbjct: 157 YVNGVQSIKDKIIRTPIPAMQDFTDDPNRIIRCFRFVAKYDFK-IDPQIYEAIPKIIPLF 215 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-------LDVQEISLDQLSQV 249 ++ ++ +R+ +E+ KL+ + + A+ ++ N G+ +F LD +E +L ++ + Sbjct: 216 MRNIAKDRVATELIKLMHSDSSFLALENLINSGMLNPVFDPESLWSLDKEE-TLKRIRRA 274 Query: 250 IEAEQVFEWKIDSLLRF-IVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + E E + +L F + + DK +I AKK + Y ++ Sbjct: 275 HQIEPNLEGENKMILYFAAIFLPLVDKDTIPDPAKKNKFTSAVHYAIV 322 >gi|167854710|ref|ZP_02477489.1| aspartate kinase III [Haemophilus parasuis 29755] gi|167854124|gb|EDS25359.1| aspartate kinase III [Haemophilus parasuis 29755] Length = 424 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L+V+D D + P++++ + P + T +++Y Sbjct: 10 LVGGAVRDQLLGLAVKDRDWLIVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEYA 64 Query: 90 DITTLRSDLITDGRYAKVV-FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + +G + FT + + D +RRD TINA+ D G D+ GG+ DL+ Sbjct: 65 LARTERKN--GNGYNGFICDFTPEVTLEQDLIRRDLTINAIAQDLDGNYHDFYGGIADLK 122 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 +R ++ + A ED LR+LR RF A + ++ L+ + A L L++ Sbjct: 123 HRLLRHVSPA---FAEDPLRVLRVARFAARFHSLGFRIAPETVKLMQEMTACGELAHLTA 179 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E K P + G K +F +V+ + Sbjct: 180 ERVWLETQKAFATDTPHIYFQVLREVGALKVLFPEVEAL 218 >gi|325917731|ref|ZP_08179919.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas vesicatoria ATCC 35937] gi|325536060|gb|EGD07868.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas vesicatoria ATCC 35937] Length = 422 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 21/198 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ + D D M+ K K P + + Sbjct: 5 LVGGAVRDALLGQAAGDRDWVVVGADQAQMQAQGFKPVGKDFPV--------FLHPRSGE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGGLND 144 + R++ + Y V D + D LRRDFTINA+ D+ G VID GG D Sbjct: 57 EYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAMARDEDSGTVIDPYGGARD 116 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+ R ++ +G A +ED +R+LR RF A D+ L+ + A L L Sbjct: 117 LQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPDTAALMREMAASGELDSL 173 Query: 201 SSERIWSEINKLLEAKNP 218 ER+W E+ + L P Sbjct: 174 VPERVWQELRRALTCAQP 191 >gi|171056797|ref|YP_001789146.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leptothrix cholodnii SP-6] gi|226702071|sp|B1Y634|CCA_LEPCP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|170774242|gb|ACB32381.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leptothrix cholodnii SP-6] Length = 419 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V D D + P++++ +P + + + + Sbjct: 5 LVGGAVRDQLLGRPVGDRDWVVVGATPEQMVAA------GYLPVGRDFPVF--LHPRTHE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKA----DSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y VF D RRD TINA+ D+ G +ID GG DL Sbjct: 57 EYALARTERKTAPGYHGFVFHTGADVSLDDDLARRDLTINAMALDEAGTLIDPWGGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSE 203 ++ ++ +G A ED +RILR RF A G+ ++ + L + + ++ L E Sbjct: 117 AHKCLRHVGAA---FAEDPVRILRLARFAARLGDFSVAPETLALCRRMVEAGEVDALVPE 173 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R+W E+++ L P + + G + +V+ + Sbjct: 174 RVWQELSRGLMEARPSRMFEVLRDCGALARLLPEVERL 211 >gi|256424923|ref|YP_003125576.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chitinophaga pinensis DSM 2588] gi|256039831|gb|ACU63375.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chitinophaga pinensis DSM 2588] Length = 483 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 15/217 (6%) Query: 29 SC-IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 +C ++GG VRD ++N +D+D+ L +V F + T YGT ++ Sbjct: 38 ACYLIGGFVRDKILNRRTKDMDVVCVGDGIALAHKVAGYFDNAKVSFFKT---YGTAQVK 94 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-----ADQQGKVIDY 138 + R + V + D LRRDFTINAL AD G ++D Sbjct: 95 WNDLEIEFVGARKESYRHESRNPDVEPGTLRDDQLRRDFTINALAISLNEADY-GSLVDP 153 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL + I+ + ++D LR++R RF + + I + + + +K Sbjct: 154 FGGIADLEAKIIRTPLEPAQTFIDDPLRMMRAIRFASQL-QFTISEESFKGIKENAERIK 212 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I+S ERI E NK++ + P + +Y GI K I Sbjct: 213 IISQERITDEFNKIMLSPVPSVGLDLLYKAGIMKIIL 249 >gi|154299760|ref|XP_001550298.1| hypothetical protein BC1G_11506 [Botryotinia fuckeliana B05.10] gi|150857196|gb|EDN32388.1| hypothetical protein BC1G_11506 [Botryotinia fuckeliana B05.10] Length = 516 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 42/279 (15%) Query: 15 LINILSLLNKGEDKSCIV-----GGAVRDSLMNLSVQDIDIATTILPD-----RVMRIFS 64 L+++ + +N+ +D V GG VRD L+ + DIDIA ++ +V Sbjct: 19 LLDVANFVNESKDIEKKVELRWAGGWVRDKLLGIQSHDIDIAINVMTGQNFGLKVREYLE 78 Query: 65 ---------------KTRYKVIPTSISYGTIKIICRKKY---FDITTLRSDLIT-DGRYA 105 K YK+ ++ + D LR + T D R Sbjct: 79 DAENLKKHGLEAKDVKKLYKIAANPEKSKQLETATTNIFQFDVDFVNLRKETYTEDSRNP 138 Query: 106 KVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDY 164 ++ F + D+LRRD TINAL+ + ++ D+ GGL D++ + IK + + +D Sbjct: 139 EMEFGTA-EEDALRRDATINALFYNLHTDILEDFTGGLADMKAKLIKTPLEPYTTFKDDP 197 Query: 165 LRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNA 221 LR+LR RF + K IDS+ +++ + L++ +S ER+ E+ K+L+ NP + Sbjct: 198 LRVLRLIRFASRLDFK-IDSEAEDCMSNPAIMEALRLKISRERVGVEVEKMLKGNNPWLS 256 Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + + GI+ IF D + I A W+I Sbjct: 257 LNYFDRLGIYSTIF-------TDPTAHEIPAPDTSSWRI 288 >gi|295698771|ref|YP_003603426.1| multifunctional CCA protein [Candidatus Riesia pediculicola USDA] gi|295698778|ref|YP_003603433.1| multifunctional CCA protein [Candidatus Riesia pediculicola USDA] gi|291156996|gb|ADD79441.1| multifunctional CCA protein [Candidatus Riesia pediculicola USDA] gi|291157164|gb|ADD79609.1| multifunctional CCA protein [Candidatus Riesia pediculicola USDA] Length = 417 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 78/347 (22%), Positives = 154/347 (44%), Gaps = 33/347 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD ++ + + D D + P ++R+ + + P + T K+ + Sbjct: 5 LVGGAVRDQILGMPISDRDWLVVGSSPQEMIRLGFQQVGRDFPVFLHPVT------KEEY 58 Query: 90 DITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + + I G F+ + D RRD TINA+ + K+ID G+ D++ Sbjct: 59 SLARIDRK-IGSGHTGFQCFSSPSVTIEEDLYRRDLTINAIAKTTKNKIIDPFFGIKDIQ 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R I+ + +A ED +R+LR RF+A E + ++ + ++ LK +S Sbjct: 118 KRIIRHVSNAFS---EDPIRVLRTARFYAKLSEYYFTIYHKTWKIIEEMVQQEDLKTVSK 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E K L +P ++ G +F ++Q I L++ + + ID Sbjct: 175 ERVWIETKKALSTSSPDLYFKMLFQCGALSVLFPEIQII----LTKSFKKKSSLTSFIDQ 230 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYG 321 ++I K ++L+ + + F + F++ + N K I ++ + Sbjct: 231 KEYIFLVIK---KSALLTKSIEVRFAALCSNFTVFFYDNHMSNSKEKKINSAVQMVRSFC 287 Query: 322 DKVMIA----KLKIFLA-LHYNNLTHQDTCF--ILQVLSDIIHWKKP 361 D++ + KL + +A +H N Q++C ++++ + W+KP Sbjct: 288 DRMCVPTKTKKLSVAIAKVHQNVQNIQNSCSKEVIKIFDQMDVWRKP 334 >gi|187476684|ref|YP_784707.1| tRNA CCA-pyrophosphorylase [Bordetella avium 197N] gi|115421270|emb|CAJ47775.1| tRNA nucleotidyltransferase [Bordetella avium 197N] Length = 355 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 18/195 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD+L+ L D D + P+ + R IP + K+ + Sbjct: 14 IVGGAVRDALLGLPAGDRDWVVVGATPEEM------ARRGFIPVGGDFPVFLHPRTKEEY 67 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y F + D RRDFT+NA+ G++ID +GG DL Sbjct: 68 ALA--RTERKSGRGYKGFTFYTGSDVTLEQDLRRRDFTVNAIARAPGGELIDPLGGQADL 125 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSE 203 R R + +G+A ED +RILR RF A + + +I + L + + + L E Sbjct: 126 RARCFRHVGEA---FAEDPVRILRLGRFAARFTDFDIAPETLALCRQMVEQGEVDALVPE 182 Query: 204 RIWSEINKLLEAKNP 218 R+W E+++ L P Sbjct: 183 RVWKELSRGLMETMP 197 >gi|255065916|ref|ZP_05317771.1| multifunctional CCA protein [Neisseria sicca ATCC 29256] gi|255049827|gb|EET45291.1| multifunctional CCA protein [Neisseria sicca ATCC 29256] Length = 418 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 27/222 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K+ +VGGAVRD L+ L V+D D A T+L + K P + T Sbjct: 9 KTYLVGGAVRDYLLGLPVKDHDWVVVGANAQTMLAQGFQPVG-----KDFPVFLHPET-- 61 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + + R++ T YA F D + D +RRD TINA+ D +ID Sbjct: 62 ------HEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDDLIID 115 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKG 196 GG DL ++ + A ED +RILR RF A YG E ++ L+ + Sbjct: 116 PFGGQQDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMRLMRQMVENGE 172 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + L +ER+W E+ K L KN I + G K + +V Sbjct: 173 VDALVAERVWQELAKGLMEKNSRRMIEVLRECGALKVLLPEV 214 >gi|311746152|ref|ZP_07719937.1| polyA polymerase family protein [Algoriphagus sp. PR1] gi|126576375|gb|EAZ80653.1| polyA polymerase family protein [Algoriphagus sp. PR1] Length = 483 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 18/227 (7%) Query: 28 KSCIVGGAVRDSLMNL---SVQDID---IATTI-LPDRVMRIFSKTRYKVIPTSI--SYG 78 ++ +VGG VRD ++N +DID + + I L + V + F Y V P S+ ++G Sbjct: 26 EAYVVGGYVRDLILNRKKSDKRDIDFTCVGSGIELAEEVAKNFD---YHV-PVSVFKNFG 81 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGK 134 T + + + R + +V + D RRDFTINA L+A G Sbjct: 82 TAMVKLEEWELEFVGARKESYRSESRKPIVEDGTLQEDLERRDFTINAMAISLHASNYGD 141 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GL DL+ +TI+ + +D LR+LR RF A + +ID D A + Sbjct: 142 LLDPFEGLVDLKRKTIRTPLEPSITFSDDPLRMLRAIRFAAQL-DFDIDPDTFYAITQNA 200 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L+I+S ERI E+NK++ P ++ + E F ++ E+ Sbjct: 201 HRLRIISGERIIDELNKIMLVPKPSYGFKLLFASKLLHEFFPEMVEL 247 >gi|219870526|ref|YP_002474901.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus parasuis SH0165] gi|219690730|gb|ACL31953.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus parasuis SH0165] Length = 423 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 18/219 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L+V+D D + P++++ + P + T +++Y Sbjct: 9 LVGGAVRDQLLGLAVKDRDWLIVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEYA 63 Query: 90 DITTLRSDLITDGRYAKVV-FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + +G + FT + + D +RRD TINA+ D G D+ GG+ DL+ Sbjct: 64 LARTERKN--GNGYNGFICDFTPEVTLEQDLIRRDLTINAIAQDLDGNYHDFYGGIADLK 121 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 +R ++ + A ED LR+LR RF A + ++ L+ + A L L++ Sbjct: 122 HRLLRHVSPA---FAEDPLRVLRVARFAARFHSLGFRIAPETVKLMQEMTACGELAHLTA 178 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E K P + G K +F +V+ + Sbjct: 179 ERVWLETQKAFATDTPHIYFQVLREVGALKVLFPEVEAL 217 >gi|20806638|ref|NP_621809.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter tengcongensis MB4] gi|20515085|gb|AAM23413.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter tengcongensis MB4] Length = 466 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 25/218 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYF 89 IVGG +RD ++N +D D + + ++ + K +P GT +I+ + Sbjct: 20 IVGGYIRDRILNKEAKDYDFVVKGNAEEIAKLAAEKMGGSFVPFMAEKGTYRIVVGDEIL 79 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-----QQGKVIDYVGGLND 144 D T LR +D D RDFTINA+ + +ID GGL D Sbjct: 80 DFTNLRG--------------KDIYEDLAHRDFTINAMAIRLTDHFEFEYIIDPFGGLKD 125 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSE 203 ++NR I+ + D R ED LR LR RF A Y + +ID + A IK + LK ++ E Sbjct: 126 IKNRKIRHVADYTFR--EDPLRALRAVRFAATY-KFDID-EATKAKIKEEAHLLKNVAPE 181 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 RI +EI ++ K+ + M + + IF +V ++ Sbjct: 182 RIMNEIFMIIREKDSHKYLRLMEELSLMENIFEEVAKL 219 >gi|239617963|ref|YP_002941285.1| CBS domain containing protein [Kosmotoga olearia TBF 19.5.1] gi|239506794|gb|ACR80281.1| CBS domain containing protein [Kosmotoga olearia TBF 19.5.1] Length = 866 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 32/229 (13%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + +VGG VRD L+N+ DID+ + RIFS T + Y +KI+ K + Sbjct: 473 TYLVGGMVRDLLLNIPNYDIDVVV----EGDARIFSHTVKR-------YFDVKIVEHKSF 521 Query: 89 ------------FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQ 132 D+ T R++ + V T K D RRDF+INA L ++ Sbjct: 522 KTSSIFFSDGVRIDVATARTEFYEEPAVLPNVETSTIKKDLYRRDFSINAMAIKLNHEEY 581 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G ++D+ G DL I+ + + +ED RILR RF +G K I+ L K Sbjct: 582 GLLLDFFGCRKDLAKGIIRILHNLS--FIEDPTRILRAIRFEQRFGFK-IEERTLQLLKK 638 Query: 193 AKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 A L+ ++ +R+ E+ K+L P NA+ M I K +F V+ Sbjct: 639 AVNDGYLERVTGQRLRDELEKILAEPEPQNAVKRMTKLDILKHLFPGVR 687 >gi|91776611|ref|YP_546367.1| metal dependent phosphohydrolase [Methylobacillus flagellatus KT] gi|122399515|sp|Q1GZ11|CCA_METFK RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|91710598|gb|ABE50526.1| metal dependent phosphohydrolase [Methylobacillus flagellatus KT] Length = 411 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 31/264 (11%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ L V+D D + P+ ++++ + K P + T + + Sbjct: 6 VGGAVRDRLLGLPVKDRDHVVVGSTPEAMVQLGYRPVGKDFPVFLHPVT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ T Y D + D RRD TINA+ D+ G +ID G+ DL Sbjct: 58 YALARTERKTGKGYKGFQVHADPEVTLEQDLARRDLTINAIAEDEHGNLIDPYHGVADLH 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILSSER 204 + ++ + A ED +RILR RF A + E ++ ++ L+ + + L ER Sbjct: 118 AKVLRHVSPA---FCEDPVRILRVARFAARFVEFSVADETMTLMRHMVEDGEVDALVPER 174 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 +W E+ K L + P + G K + + LD+L V + + + +ID+ + Sbjct: 175 VWQELAKGLMEQRPSRMFEVLRACGALKRLLPE-----LDRLFGVPQTAK-YHPEIDTGV 228 Query: 265 RFIVLISWQDKKSILSMAKKFSLP 288 +++I + + FSLP Sbjct: 229 HVMLVIDYAARAG-------FSLP 245 >gi|298385155|ref|ZP_06994714.1| polyA polymerase family protein [Bacteroides sp. 1_1_14] gi|298262299|gb|EFI05164.1| polyA polymerase family protein [Bacteroides sp. 1_1_14] Length = 477 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKYNGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + +V + D RRDFTINA L + G+++D GG+ D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFGGMAD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF ID D + + K ++I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNKDRIEIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P V + G+ IF ++ Sbjct: 213 IADELNKIILSPIPSKGFVELERSGLLPLIFPEL 246 >gi|27904565|ref|NP_777691.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372171|sp|Q89B06|CCA_BUCBP RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|27903962|gb|AAO26796.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 419 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPT-----SISYGTIKIIC 84 +VGGA+R+ +NL VQD D + P+ ++ + K K P S ++ + Sbjct: 5 LVGGAIRNKFLNLPVQDRDWVVVGATPEILLSLKFKQVGKGFPVFLHPYSKEEYSLARVD 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D Y+ V K D +RRD TINA+ D G ID G+ D Sbjct: 65 RKIGVGHTGFSFD------YSNKV---TLKEDLMRRDLTINAIAQDNNGNYIDPFKGIRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKIL 200 ++NR ++ + A ED LR+LR RF F H G + + SI K L L Sbjct: 116 IKNRILRHVSPAFS---EDPLRVLRIARFCALFHHLGFRIATETMKIMSIVVKNNELLNL 172 Query: 201 SSERIWSEINKLLEAKNP 218 + +R+W E K NP Sbjct: 173 TRDRVWKETEKAFNTDNP 190 >gi|117619276|ref|YP_858232.1| multifunctional CCA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166233839|sp|A0KPN1|CCA_AERHH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|117560683|gb|ABK37631.1| multifunctional CCA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 412 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 45/308 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 ++ +VGGAVRD L+ L D D + T+ ++++ + + P + T Sbjct: 2 QTYLVGGAVRDRLLGLPQGDRDHLVVGATV--EQMLALGFTQVGRDFPVFLHPKT----- 54 Query: 85 RKKYFDITTLRSDLITDGR-YAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYV 139 +++Y T R GR Y V + D LRRD T+NA+ D+ G++ D Sbjct: 55 QQEYALARTERKQ----GRGYTGFVCHASPEVTLEQDLLRRDLTVNAIAEDEAGQLHDPY 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKK 195 GG+ DL+ R ++ + A ED LRILR RF A + + ++ L+ + Sbjct: 111 GGIEDLKQRLLRHVSPA---FAEDPLRILRVARFAARFHAQGFVVAPETLALMREMTEAG 167 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L L+ ER+W E+ K+L P + G +F + LD L V A Sbjct: 168 ELAHLTPERVWKELEKVLLGPTPQVFFEVLRECGALAALFPE-----LDALFGV-PAPAK 221 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 + +ID+ + ++ +L+ A + S +R+ + C+ K L+ PE Sbjct: 222 WHPEIDTGIHTMM---------VLAQACRLSPELAVRFAAL----CHDFGKGLTPPEFWP 268 Query: 316 LFYLYGDK 323 + +G K Sbjct: 269 SHHGHGQK 276 >gi|154494462|ref|ZP_02033782.1| hypothetical protein PARMER_03817 [Parabacteroides merdae ATCC 43184] gi|154085906|gb|EDN84951.1| hypothetical protein PARMER_03817 [Parabacteroides merdae ATCC 43184] Length = 477 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 11/219 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI----ATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 ++ ++GG VRD ++ +DID+ + L V R + Y + ++GT ++ Sbjct: 30 EAYVIGGYVRDIFLHRPSKDIDVVAIGSGIELAKAVARKLGRGAY--LSVFKNFGTAQVK 87 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYV 139 + R + T +V + D RRDFTINAL D+ G+++D Sbjct: 88 AGDLELEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINALALCLNKDRYGELVDPF 147 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GL D+ N I+ D +D LR++R RF + G ID D A + K+ + I Sbjct: 148 DGLTDMDNLLIRTPLDPDITFSDDPLRMMRAVRFASQLG-FFIDPDTFDAIERNKERISI 206 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +S ERI E+NK++ + P + G+ IF ++ Sbjct: 207 ISKERIVDELNKIVLSPKPSVGFDLLERCGLLPLIFPEL 245 >gi|256820884|ref|YP_003142163.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Capnocytophaga ochracea DSM 7271] gi|256582467|gb|ACU93602.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Capnocytophaga ochracea DSM 7271] Length = 469 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 14/221 (6%) Query: 28 KSCIVGGAVRDSLMNLSV-QDIDIATT----ILPDRVM-RIFSKTRYKVIPTSISYGTIK 81 +S ++GG VRD L+ + +DID+ + L ++V R+ + + + ++GT Sbjct: 25 ESYVIGGFVRDYLLEKKLPKDIDVVSIGSGISLAEKVAERLPNAPKVSIFK---NFGTAM 81 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVID 137 I + R + V + + D RRDFTINA L D G++ID Sbjct: 82 IKADGLDIEFVGARRESYEANSRKPYVESGTLQDDQNRRDFTINAMAFSLNRDTFGELID 141 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GL DL+ + I+ D +D LR++R RF K I+ L A K+ L Sbjct: 142 PFDGLGDLKRKLIRTPLDPDITYSDDPLRMMRAIRFATQLNFK-IEKQSLKAITDNKERL 200 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 KI+SSERI E+NK+L + P + +Y G+ I ++ Sbjct: 201 KIISSERIVEELNKILASPKPSIGLKLLYETGLLHYILPEL 241 >gi|330836498|ref|YP_004411139.1| poly(A) polymerase [Spirochaeta coccoides DSM 17374] gi|329748401|gb|AEC01757.1| poly(A) polymerase [Spirochaeta coccoides DSM 17374] Length = 443 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 23/211 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D+D + L + ++ IVGGAVRD L+ +D DIAT P +V R+F R Sbjct: 33 DADAAWSVRKLQQSGAEAYIVGGAVRDLLVGHVPKDFDIATNASPRQVQRMFWNARI--- 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ K +++T RSD + DG + VF + D+ RRDFTINALY Sbjct: 90 -IGKRFKLVHLVFNDKILEVSTFRSDEEMAEDG--SNNVFG-TIEQDARRRDFTINALYY 145 Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--- 185 D G ++D+ L D + + I+ + +ED +R++R ++ + +D Sbjct: 146 DPMTGHLLDFNDSLQDFKKKRIRSLIPLKETFIEDPVRMIRAIKYA-------VSTDFSL 198 Query: 186 --GLVASIKA-KKGLKILSSERIWSEINKLL 213 L +I++ + L S R+ E+NK+L Sbjct: 199 PLSLRMAIRSHSRELSRASVSRLTEEVNKIL 229 >gi|226952618|ref|ZP_03823082.1| tRNA nucleotidyl transferase [Acinetobacter sp. ATCC 27244] gi|226836698|gb|EEH69081.1| tRNA nucleotidyl transferase [Acinetobacter sp. ATCC 27244] Length = 409 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 18/191 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D + PD+++ + K P + T +++Y Sbjct: 5 LVGGAVRDQLLGHPYHEKDYVVVGATPDQLLAEGYQPVGKDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G + FT + D +RRD TINA+ D G+V D GG DL Sbjct: 60 LARTERKSGV--GYHGFQFFTDADVSLEEDLIRRDLTINAMAMDANGQVYDPYGGQKDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAH---YGEKNIDSD-GLVASIKAKKGLKILSS 202 + ++ + H ED LR+LR RF A YG K D L+ I L L+ Sbjct: 118 QKILRHVS---HAFTEDPLRVLRVARFAARYESYGFKIADETLHLMREIAESGELNELTP 174 Query: 203 ERIWSEINKLL 213 ER+W E + L Sbjct: 175 ERVWKETARAL 185 >gi|153809425|ref|ZP_01962093.1| hypothetical protein BACCAC_03739 [Bacteroides caccae ATCC 43185] gi|149128011|gb|EDM19233.1| hypothetical protein BACCAC_03739 [Bacteroides caccae ATCC 43185] Length = 477 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ + Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVKYKGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYHRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFGGMED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++ +TI+ D +D LR++R RF ID D + + ++ + I+S ER Sbjct: 154 MKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDDTFESLCRNRERINIISRER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P + + G+ IF ++ Sbjct: 213 IADELNKIILSPVPSKGFIDLERSGLLSLIFPEL 246 >gi|297845758|ref|XP_002890760.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297336602|gb|EFH67019.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 534 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 109/249 (43%), Gaps = 26/249 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +Q DS + +L+ L K + +VGG VRD +++ +D D+ TT V ++F Sbjct: 85 IQRSMIPDSTRM-VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVF- 142 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV----------VFTRD-- 112 P G IC DI S T R K RD Sbjct: 143 -------PRCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPSKNLRKPAGCDERDYI 195 Query: 113 -WKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 WK + L+RDFT+N L D V+ DY+GG+ D+RN ++ + A +ED RILR Sbjct: 196 RWK-NCLQRDFTVNGLMFDLSENVVYDYIGGVEDIRNSKVRTVSAAKLSFVEDTARILRA 254 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 R A G ++ D ++ + L L RI EIN +L + ++ ++ G+ Sbjct: 255 IRIAARLGF-SLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFGL 313 Query: 231 FKEIFLDVQ 239 EI L +Q Sbjct: 314 M-EILLPIQ 321 >gi|304312390|ref|YP_003811988.1| tRNA nucleotidyltransferase [gamma proteobacterium HdN1] gi|301798123|emb|CBL46345.1| tRNA nucleotidyltransferase [gamma proteobacterium HdN1] Length = 445 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N + D D + P ++ + + + P + K Sbjct: 5 LVGGAVRDQLINKTTHDRDWVVVGASPAEMLALGYQQVGRDFPV--------FLHPKSKE 56 Query: 90 DITTLRSDLITDGRYAKV-VFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y +T + D LRRD TINA+ + G +ID GG DL Sbjct: 57 EHALARTERKTAAGYGGFDCYTGSDVTLEEDLLRRDLTINAMAQTEDGTIIDPYGGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + A ED LR+LR RF A Y ++ L+ +I ++ L+ Sbjct: 117 EARILRHVSPA---FSEDPLRVLRVARFQARYANDGFRIADETLALMQTIVTNGEIEHLT 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER+WSE + L +P Sbjct: 174 AERVWSETARALLEPSP 190 >gi|254429964|ref|ZP_05043671.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Alcanivorax sp. DG881] gi|196196133|gb|EDX91092.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Alcanivorax sp. DG881] Length = 410 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 35/275 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+ L V + D + P+ + + K P + T + Sbjct: 5 LVGGAVRDSLLGLPVTEKDWVVVGATPEEMEANGFRPVGKDFPVFLHPDTQE-------- 56 Query: 90 DITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y F + D +RRD TINA+ + G+V+D G DL Sbjct: 57 EYALARTERKSGHGYGGFTFHAASDVSLEEDLIRRDLTINAMARSEGGEVVDPFHGKIDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILS 201 + R ++ + A ED LR+LR RF A Y G + D L+ + L L Sbjct: 117 KARLLRHVSPA---FAEDPLRVLRVARFAARYHWLGFRVADDTLTLMRQLSDSGELDYLV 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E ++ L P ++ G +++F ++ +LD + Q + ++D Sbjct: 174 PERVWKETSRALMEPAPQVFFQVLHVCGALEKLFPEL--AALDGVPQ----PEAHHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 +L+ W L MA K LP RY ++ Sbjct: 228 TLVH-----QWL----CLEMAAKLKLPLTARYAVL 253 >gi|12322982|gb|AAG51472.1|AC069471_3 hypothetical protein [Arabidopsis thaliana] Length = 462 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 26/246 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +Q DS + +L+ L K + +VGG VRD +++ +D D+ TT V ++F Sbjct: 56 IQRSMIPDSTRM-VLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELKEVRKVF- 113 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD----------WK 114 P G IC DI ++ G+ F R WK Sbjct: 114 -------PGCQIVGRRFPICHVYVDDIII---EVSRTGKAPNKSFRRPAGCDERDYIRWK 163 Query: 115 ADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 + L+RDFT+N L D V+ DY+GG+ DLRN ++ + A+ +ED RILR R Sbjct: 164 -NCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARILRAIRI 222 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A G ++ D ++ + L L RI EIN +L + ++ ++ G+ E Sbjct: 223 AARLGF-SLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFGLM-E 280 Query: 234 IFLDVQ 239 I L +Q Sbjct: 281 ILLPIQ 286 >gi|300776646|ref|ZP_07086504.1| tRNA nucleotidyltransferase [Chryseobacterium gleum ATCC 35910] gi|300502156|gb|EFK33296.1| tRNA nucleotidyltransferase [Chryseobacterium gleum ATCC 35910] Length = 472 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 18/223 (8%) Query: 31 IVGGAVRDSLMNLSVQ-DIDIATT-----ILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 IVGG VRD LMN DID T + + I K + V T YGT I Sbjct: 30 IVGGYVRDLLMNRKASTDIDFVTEQSGIELAQNVAQDIDPKLKVSVFKT---YGTAMIKY 86 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVG 140 ++ + R + T+ V + D RRDFTINA L + G++ID Sbjct: 87 KELDLEFVGARKESYTENSRKPEVEGGSLEDDQKRRDFTINAMAISLNKNNFGELIDPFN 146 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLVASIKAKKGLK 198 G++DL ++ + +D LR++R RF + H+ I+ + L A + + ++ Sbjct: 147 GIDDLEKEILRTPLEPAQTYSDDPLRMMRAVRFASTLHF---KIEENSLKAIQQEAERIR 203 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I+S ERI E NK++ ++ P + M G+ K I ++ E+ Sbjct: 204 IVSMERIMVEFNKIMLSEKPSVGLRLMEQTGLLKLIIPELIEL 246 >gi|160889203|ref|ZP_02070206.1| hypothetical protein BACUNI_01624 [Bacteroides uniformis ATCC 8492] gi|156861210|gb|EDO54641.1| hypothetical protein BACUNI_01624 [Bacteroides uniformis ATCC 8492] Length = 476 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQLKYYGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD----QQGKVIDYVGGLND 144 + R + T +V + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINALAVCLNRVRYGELVDPFGGIGD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ +TI+ D +D LR++R RF G ID + + + ++ + I+S ER Sbjct: 154 LKEKTIRAPLDPDITFSDDPLRMMRCVRFATQLG-FYIDDETFDSLERNRERISIISKER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P + + G+ + IF ++ Sbjct: 213 IADELNKIILSPIPSKGFIELDRCGLLELIFPEL 246 >gi|332140340|ref|YP_004426078.1| tRNA nucleotidyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|226702033|sp|B4RVV4|CCA_ALTMD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|327550362|gb|AEA97080.1| tRNA nucleotidyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 397 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 12/193 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+N V + D + P ++ K P + T + + Sbjct: 5 LVGGAVRDALLNRKVIERDYVVVGATPQEMLSQGFTQVGKDFPVFLHPKTQEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + + D LRRD T+NA+ D G +ID GG DL N Sbjct: 63 --TERKSGKGYTGFVCDASSSVTLEEDLLRRDLTVNAIAQDNLGNLIDPYGGKKDLENHL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + +A ED LR+ R RF Y ++ L+ S+ L LS+ER+ Sbjct: 121 LRHVSEAFS---EDPLRVFRVARFATRYAYLGFTIANETMALMQSMAESGELSTLSAERV 177 Query: 206 WSEINKLLEAKNP 218 W E + L K P Sbjct: 178 WQETKRSLLEKTP 190 >gi|294649931|ref|ZP_06727323.1| tRNA adenylyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292824160|gb|EFF82971.1| tRNA adenylyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 409 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 18/191 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D + PD+++ + K P + T +++Y Sbjct: 5 LVGGAVRDQLLGHPYHEKDYVVVGATPDQLLAEGYQPVGKDFPVFLHPKT-----KEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G + FT + D +RRD TINA+ D G+V D GG DL Sbjct: 60 LARTERKSGV--GYHGFQFFTDADVSLEEDLIRRDLTINAMAMDANGQVYDPYGGQKDLE 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAH---YGEKNIDSDGLVASIKAKKG-LKILSS 202 + ++ + H ED LR+LR RF A YG K D + AK G L L+ Sbjct: 118 QKILRHVS---HAFTEDPLRVLRVARFAARYESYGFKIADETLHLMREIAKSGELNELTP 174 Query: 203 ERIWSEINKLL 213 ER+W E + L Sbjct: 175 ERVWKETARAL 185 >gi|123408241|ref|XP_001303159.1| polyA polymerase family protein [Trichomonas vaginalis G3] gi|121884516|gb|EAX90229.1| polyA polymerase family protein [Trichomonas vaginalis G3] Length = 449 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 25/231 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPD-----RVMRIFSKTRYKVI-----PTSISYGTI 80 + GG VRD L+N DIDI ++ + K K++ P + Sbjct: 41 VAGGWVRDKLLNKECDDIDICVEGCTSEEFALQLAEQYPKKATKIVVFEENPKQAKFMKT 100 Query: 81 KIIC--RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 +C + DI LR + + D+ RD +INAL+ + KV D Sbjct: 101 VRVCIYGSAWIDICNLRGENLVATALT----------DAQHRDLSINALFYNITDSKVED 150 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VASIKAKKG 196 +VGG+ DL+N+ I+ ED LRI+R RF YG K ID + L +A + Sbjct: 151 FVGGIQDLKNQVIRTPISPDVTFTEDPLRIIRSIRFHVRYGYK-IDENLLEIAKLHLSDF 209 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 + +S ERI SEI K++ + + + G F+ IF S+D L Sbjct: 210 EQRVSKERIASEIIKIIRMDGFIEFVDLIIKIGFFETIFDPFHRYSIDPLQ 260 >gi|188586271|ref|YP_001917816.1| CBS domain containing protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350958|gb|ACB85228.1| CBS domain containing protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 890 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 97/429 (22%), Positives = 179/429 (41%), Gaps = 52/429 (12%) Query: 13 SDLINILSLLNKGEDKSCI----VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 S ++ +L L+ + DK VGG +RD L+ DID+ ++ SK Sbjct: 469 SKILGVLYLIGQKADKEGFKVYGVGGFIRDLLLGKDNLDIDLVIEQDAISFAKLVSKHLN 528 Query: 69 KVIPTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T + T ++ R D T R + + V K D RRDFTIN L Sbjct: 529 GDLKTFSQFQTARLTLRSGTRIDFATARIEYYAFPAASPEVEESTIKQDLYRRDFTINTL 588 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 + GK++D+ GG DL+ I+ + + +ED RI R RF + + NI+ Sbjct: 589 AVELNCNSFGKLLDFFGGTKDLKKGVIRVLYNL--SFVEDPTRIFRAIRFESRFN-FNIE 645 Query: 184 SDGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L+ + + L L ER++ E+ +++ +N M GIF +IF ++ + Sbjct: 646 EQTLIFIKNSLETGVLDKLPGERLYEELRNIVDEDEAVNTFRRMDELGIFTKIFPNLN-V 704 Query: 242 SLDQLSQVIEAEQVFEWK------------IDSLLRFIVLISWQDKKSILSMAKKFSLPR 289 S D+L ++ + W + F L+ Q I S+ ++ +P+ Sbjct: 705 SQDKLVKLQNIYDILNWYERENKQKQEKFVSKEAMVFSCLLQDQPLPIISSILERLKVPQ 764 Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 +IR +I+ ++LS KL Y + ++ L+ + + F+L Sbjct: 765 KIRDVIITTVK---ETESLS----SKLEYTEKNSELVQNLE--------EIPLETILFVL 809 Query: 350 ------QVLSDIIHWKKPLF----PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399 ++ + I ++ + L +TG+D+ GI PG L ++ ++ Sbjct: 810 ADKENQKIKNKIYYYLEELIGAGVSITGEDLKTLGIKPGPVYKTALEEVRKARLDGLVTT 869 Query: 400 SQEDLHHLL 408 +E+L ++L Sbjct: 870 PEEELEYVL 878 >gi|270295998|ref|ZP_06202198.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479566|ref|ZP_07938693.1| poly A polymerase head domain-containing protein [Bacteroides sp. 4_1_36] gi|270273402|gb|EFA19264.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904228|gb|EFV26055.1| poly A polymerase head domain-containing protein [Bacteroides sp. 4_1_36] Length = 476 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + +DID+ + K + S+ ++GT ++ Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQLKYYGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD----QQGKVIDYVGGLND 144 + R + T +V + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINALAVCLNRVRYGELVDPFGGIGD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ +TI+ D +D LR++R RF G ID + + + ++ + I+S ER Sbjct: 154 LKEKTIRTPLDPDITFSDDPLRMMRCVRFATQLG-FYIDDETFDSLERNRERISIISKER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P + + G+ + IF ++ Sbjct: 213 IADELNKIILSPIPSKGFIELDRCGLLELIFPEL 246 >gi|195953814|ref|YP_002122104.1| Polynucleotide adenylyltransferase region [Hydrogenobaculum sp. Y04AAS1] gi|195933426|gb|ACG58126.1| Polynucleotide adenylyltransferase region [Hydrogenobaculum sp. Y04AAS1] Length = 821 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 107/229 (46%), Gaps = 15/229 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++I S++ KGE K +VGG VRD ++N DID + + + + I T Sbjct: 445 IMDIKSVIPKGE-KLYLVGGVVRDIILNRPSYDIDF---VFEGDIDLLEQSLKSHGIKTH 500 Query: 75 ISYGTIKIICRKKYFDI---TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA-- 129 G + + K F I +T R G Y VV K D RRDFTIN L Sbjct: 501 RFLGFNSVHFKYKGFKIEISSTRREYYEMAGAYP-VVSKASLKEDLFRRDFTINTLLLSL 559 Query: 130 DQQ--GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDG 186 D++ G VIDY G LND++N+ I+ + +ED +RILR RF A K + D+ Sbjct: 560 DEEDFGTVIDYFGALNDIKNKIIRVLHPL--SFIEDPVRILRAIRFEAKLNFKLSKDTKR 617 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 L+ K LK RI++E+ L+ K N GI + +F Sbjct: 618 LLEETLQKGMLKYAPKGRIFNELKIALQEKEFENIFETYKKYGIIESLF 666 >gi|254522222|ref|ZP_05134277.1| tRNA nucleotidyltransferase [Stenotrophomonas sp. SKA14] gi|219719813|gb|EED38338.1| tRNA nucleotidyltransferase [Stenotrophomonas sp. SKA14] Length = 428 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 21/221 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ D D + P ++ + P + T + Sbjct: 27 LVGGAVRDRLLQRPAGDRDWVVVGATPAQMEAQGYTAVGRDFPVFLHPQTGE-------- 78 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGGLND 144 + R++ + Y V D + D RRDFTINA+ D+ G ++D GG+ D Sbjct: 79 EYALARTERKSGRGYRGFVVDADPAVTLEEDLQRRDFTINAIACDEDTGSLVDPYGGVRD 138 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L R ++ +G A +ED LR+LR RF A + ++ L+ + A L L Sbjct: 139 LEQRVLRHVGPA---FVEDPLRVLRAARFMARFAPLGFSVAPETMALMREVAASGELDAL 195 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W E+ K L + P + +++ I +++ + Sbjct: 196 VPERVWQELRKALVCECPSAFLRTLHDAHALGPILPELEAL 236 >gi|21672351|ref|NP_660418.1| tRNA CCA-pyrophosphorylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008220|sp|Q8KA53|CCA_BUCAP RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|21622954|gb|AAM67629.1| tRNA nucleotidyltransferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 412 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 98/221 (44%), Gaps = 28/221 (12%) Query: 31 IVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRDSL+NL ++D D +L ++ + P + ++ Sbjct: 5 LVGGAVRDSLLNLPIKDRDWVIVGGTKEILLKKNFQQVGKDFPVFLHPETHEEYSLARKE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T ++ +D + D +RRD TINA+ D+ G ID G D Sbjct: 65 RKSGRGYTGFHTEFSSDV---------TLEEDLIRRDLTINAIAQDENGNYIDPFQGRKD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYGEKNIDSDGLVASIK--AKKGLKI 199 L R ++ + ++ ED LRILR RF A H G +ID D ++ K K L Sbjct: 116 LNLRLLRHVSES---FTEDPLRILRTARFAANLMHLGF-HIDKDTMILMCKMVKKNELLY 171 Query: 200 LSSERIWSEINKLLEAKNP--LNAIVHMYNG--GIFKEIFL 236 L+ RIW+E K + NP I+H IF EIF Sbjct: 172 LTKNRIWNETEKAFKTLNPHVYFQILHACKALNFIFPEIFF 212 >gi|255322373|ref|ZP_05363519.1| polyA polymerase family protein [Campylobacter showae RM3277] gi|255300746|gb|EET80017.1| polyA polymerase family protein [Campylobacter showae RM3277] Length = 378 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 17/194 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ IVGG VRD+++ + D D+ I P + + ++ + G + + Sbjct: 27 RAYIVGGCVRDAMLGKKISDFDVEIYGIEPAKFDALMAQI------GACGVGKNYFVYKF 80 Query: 87 KYFDITTLRSDLIT-DGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLN 143 K FD++ R++ T +G A +V ++ D +A SLRRDFT+NA+ + G +D+ GG Sbjct: 81 KNFDLSLPRTENKTGEGHKAFEVAYSDDERAASLRRDFTVNAMMINIFDGSFLDFYGGER 140 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSS 202 DL+ ++ I D + ED LRILR +F A + +S GL+ + + LS Sbjct: 141 DLKRGILRHIDD--EKFAEDSLRILRAVQFSARLNFRIARESLGLMKRLS----ISDLSR 194 Query: 203 ERIWSEINKLLEAK 216 ERI E+ KL AK Sbjct: 195 ERINGELMKLFGAK 208 >gi|255536246|ref|YP_003096617.1| tRNA nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255342442|gb|ACU08555.1| tRNA nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 506 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 12/239 (5%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVM 60 +++ Q+K F L++ ++ N + IVGG VRD LM V DID T + Sbjct: 37 INLTQNKHFKLFKLVSEVAAKNG--QSAYIVGGYVRDLLMKRGVPSDIDFVTEGSGIDLA 94 Query: 61 RIFSK---TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 + + R+KV +YGT + R + + V + D Sbjct: 95 QALANEINPRWKV-SVFKNYGTAMFKHNGLDLEFVGARKESYAEDSRNPAVEAGTLEDDQ 153 Query: 118 LRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 RRDFT+NAL + G++ID GG++DL+N+ I+ + +D LR+LR RF Sbjct: 154 KRRDFTVNALAISLNKENFGELIDPFGGISDLKNKIIRTPLEPSQTYSDDPLRMLRAIRF 213 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + K I+ + L A + +KI+S ERI E NK++ ++ P + + G+ + Sbjct: 214 ASTLRFK-IEENSLAAIKTEAERIKIVSRERIMVEFNKIMLSEKPSAGLKILEQTGLMQ 271 >gi|258647149|ref|ZP_05734618.1| polyA polymerase family protein [Prevotella tannerae ATCC 51259] gi|260853114|gb|EEX72983.1| polyA polymerase family protein [Prevotella tannerae ATCC 51259] Length = 479 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 7/217 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DIDI + +K + S+ ++GT ++ + Sbjct: 35 VVGGYVRDLFLERPTNDIDIVVVGSGIAMAEALTKRLGRAAHLSVFKNFGTAQVKYHHQE 94 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 + R + + +V + D +RRDFTINAL + G+++D GL D Sbjct: 95 IEFVGARRESYSHDSRKPIVEDGTLEDDQMRRDFTINALAVCLNTARYGELVDPFDGLWD 154 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + ++ D +D LR++R RF + ID + A + + L I+S ER Sbjct: 155 LEDGLLRTPTDPDITFSDDPLRMMRCVRFATQLNFR-IDDETFAALERNAERLSIISGER 213 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I E+NK++ A P V + G+ I ++ + Sbjct: 214 IIEELNKIMRAPLPSIGFVELQRSGLLPIILPELSAL 250 >gi|332995335|gb|AEF05390.1| poly(A) polymerase I [Alteromonas sp. SN2] Length = 438 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 111/269 (41%), Gaps = 38/269 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LN +S +VGG VRD LM +D D+AT P+++ +F R Sbjct: 15 PNALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVATNATPEQIKGLFRNCRL---- 70 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV-----VFTRDW-------------K 114 + I+ ++ ++ T R + +V V RD + Sbjct: 71 IGRRFRLAHIVFGREVIEVATFRGHHSEEPEAKEVPKNKAVSKRDAHGQLVRDNVFGSIE 130 Query: 115 ADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDFT NA+Y AD V D+ GL + R ++ IGD R ED +R+LR Sbjct: 131 EDAERRDFTFNAMYYSVAD--FTVKDFANGLEAIEKREVRLIGDPEVRYREDPVRMLRAV 188 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + SD A IK L + + R++ E KL + + + G+ Sbjct: 189 RFATKLSMR--ISDDTAAPIKQLASLLNNIPAARLFEETLKLFLSGQGEKTFLMLREYGL 246 Query: 231 FKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 +F QL+ IE E E + Sbjct: 247 IAPLF--------PQLAPFIEDENSREMQ 267 >gi|88802647|ref|ZP_01118174.1| putative polyA polymerase [Polaribacter irgensii 23-P] gi|88781505|gb|EAR12683.1| putative polyA polymerase [Polaribacter irgensii 23-P] Length = 473 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 15/217 (6%) Query: 13 SDLINILSLLNKG-EDKSCIVGGAVRDSLMNL-SVQDIDI----ATTILPDRVMRIF-SK 65 SD+ I+S +K +S ++GG VRD + + +DIDI + L ++V + +K Sbjct: 12 SDIFKIISEASKHLHIESYVIGGFVRDFFLKRGTAKDIDIVAIGSGIALAEKVASLLPNK 71 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++ T YGT + + + R + ++ VF + D RRDFTIN Sbjct: 72 PKVQIFKT---YGTAMLRYKDIEIEFVGARKESYSEESRNPEVFEGTLQEDQNRRDFTIN 128 Query: 126 ALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL + G ++D G+ DL+N I+ + +D LR+LR RF Sbjct: 129 ALALSLNEENFGALLDPFHGMEDLKNACIRTPLNPAITYSDDPLRMLRAIRFATQLN-FT 187 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 I+ LVA K + L+I++ ERI EINK++ + P Sbjct: 188 IEEASLVAIEKNSERLEIITRERIVDEINKIMASTKP 224 >gi|94676710|ref|YP_589047.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166233843|sp|Q1LSL7|CCA_BAUCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|94219860|gb|ABF14019.1| tRNA nucleotidyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 412 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 97/223 (43%), Gaps = 27/223 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTR--YKVI--PTSISYGTIK 81 K +VGGAVRD L+ + V++ D + T L D + + + + V P S + Sbjct: 2 KKYLVGGAVRDRLLQIPVKERDWVVIGTTLQDMLKAGYQQVGKDFPVFLHPKSHEEYALA 61 Query: 82 IICRKK----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 I +K Y T S IT + D RRD TINA+ D+ G +ID Sbjct: 62 RIEKKSATGGYTGFTYKASSEIT------------LEEDLKRRDLTINAIACDENGSLID 109 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKK 195 G DL R ++ + +A ED LR+LR RF A N I + + Sbjct: 110 PYNGQRDLNQRWLRHVSEA---FCEDPLRVLRVARFAAQLAYLNFRIVPETRLMMQHMIS 166 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +LS ERIW E K L ++P + + G K +F ++ Sbjct: 167 ELPLLSPERIWKETEKALATRDPQIYFQVLRDCGALKTLFPEI 209 >gi|15219925|ref|NP_173680.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative [Arabidopsis thaliana] gi|13877577|gb|AAK43866.1|AF370489_1 tRNA adenylyltransferase-like protein [Arabidopsis thaliana] gi|23198306|gb|AAN15680.1| tRNA adenylyltransferase-like protein [Arabidopsis thaliana] gi|332192145|gb|AEE30266.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] Length = 605 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 20/224 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-------------TTILPDRVMRIFSKTRYKVIP-TSIS 76 + GG VRD L+ DIDIA L R + T + P S Sbjct: 112 VAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDKFKEYLSSRDEEVQGDTVIERNPDQSKH 171 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 T K+ ++ D LRS+ T+ + K D+ RRD TIN+L+ + G V Sbjct: 172 LETAKLRIYDQWIDFVNLRSEEYTENSRIPTMKFGTAKDDAFRRDLTINSLFYNINSGAV 231 Query: 136 IDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASI 191 D G++DL++ I A L+D LR+LR RF A +G ++ + + Sbjct: 232 EDLTERGIDDLKSGKIVTPLPAKATFLDDPLRVLRAVRFGARFGFTLDEELKEAASSEEV 291 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + G KI S ERI +EI+ ++ P++A+ ++ + +F +F Sbjct: 292 RVALGEKI-SRERIGNEIDLMISGNGPVSAVTYLSDLKLFSVVF 334 >gi|226327176|ref|ZP_03802694.1| hypothetical protein PROPEN_01041 [Proteus penneri ATCC 35198] gi|225204394|gb|EEG86748.1| hypothetical protein PROPEN_01041 [Proteus penneri ATCC 35198] Length = 371 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 12/216 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + V+D D + P+ +++ + K P + T + + Sbjct: 5 LVGGAVRDQLLQIPVKDRDWVVVGATPEELLQQGYQQVGKDFPVFLHPDTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D RRD TINA+ G+ ID G++D+ R Sbjct: 63 --TERKSGSGYTGFTCYAAPDVTLEDDLARRDLTINAIAYSANGEYIDPYQGIDDINARL 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + DA ED LR+LR RF A + ++ L+ ++ L L++ER+ Sbjct: 121 LRHVSDA---FSEDPLRVLRVARFAARFAPLGFSVAPETLQLMKTMAQSGELNALTAERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 W E K E+ P + G K +F ++ + Sbjct: 178 WKETEKAFESHAPQVYFEVLRQCGALKILFPEIDAL 213 >gi|146323072|ref|XP_756003.2| tRNA nucleotidyltransferase [Aspergillus fumigatus Af293] gi|129558602|gb|EAL93965.2| tRNA nucleotidyltransferase [Aspergillus fumigatus Af293] Length = 633 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 37/244 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL--------------------------PDRVMRIFSK 65 GG VRD L+ + DID+ + + P+ M+ Sbjct: 154 TGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKDYLDIPENLEKYKRNHPNGHMKEAIV 213 Query: 66 TRYKVIPTSISYGTIKIICRKKY---FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRD 121 + +K+ ++ + K + D+ LR ++ TD R ++ F + D+LRRD Sbjct: 214 SLHKIEANPEKSKHLETVTTKIFGFDIDLVNLRKEMYTDDSRNPQMEFG-TAEEDALRRD 272 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 TINAL+ + + KV D G G +D+R++ I+ + + +D LR+LR RF + G Sbjct: 273 ATINALFYNLNESKVEDLTGRGFSDMRDKIIRTPMEPYQTFKDDPLRVLRLIRFASRLGY 332 Query: 180 K---NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 K N + + I LKI S ER+ +E+ K+L+ +P A+ + G++ IF Sbjct: 333 KIDPNTERAMQNSDISVALKLKI-SRERVGTELEKMLKGPDPRGALQLIDRLGLYHTIFA 391 Query: 237 DVQE 240 + Q+ Sbjct: 392 NHQD 395 >gi|307565902|ref|ZP_07628361.1| HDIG domain protein [Prevotella amnii CRIS 21A-A] gi|307345330|gb|EFN90708.1| HDIG domain protein [Prevotella amnii CRIS 21A-A] Length = 474 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 11/237 (4%) Query: 17 NILSLLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +I ++K DK C +VGG VRD + DID+ +V K Sbjct: 16 DIFHNISKAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIKVAHELKNILGKQAH 75 Query: 73 TSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA---- 126 SI ++GT ++ + + R + + +V + D RRDFTINA Sbjct: 76 ISIFKNFGTAQVKYKNIEVEFVGARKESYSHDSRKPLVENGTLEDDQNRRDFTINAMAIC 135 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 L + GK+ID GG++DL + I+ D +D LR++R RF I+ D Sbjct: 136 LNSHLFGKLIDPFGGIDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFF-IEDDT 194 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 A + + +KI+S+ERI E+NK++ K P V + G+ + I ++ + + Sbjct: 195 FAALERNAERIKIISNERIIEELNKIIMTKTPSKGFVDLQRCGLLQIIMPELTSMDV 251 >gi|254361074|ref|ZP_04977219.1| tRNA adenylyltransferase [Mannheimia haemolytica PHL213] gi|153092560|gb|EDN73615.1| tRNA adenylyltransferase [Mannheimia haemolytica PHL213] Length = 416 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDI------ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD L+ L V+D D A +L ++ + + P + + Sbjct: 5 LVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGADFPVFLHPETKEEYALARQE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK D + V +D +RRD TINA+ D+ + D GG+ D Sbjct: 65 RKNGNGYNGFICDFSPN-----VTLEQDL----IRRDLTINAIAQDENSTLFDPYGGVQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L NR ++ + A ED LR+LR RF A + ++ L+ + LK L Sbjct: 116 LENRLLRHVSPA---FSEDPLRVLRVARFAARFHSFGFTIAPETLKLMREMVQSGELKHL 172 Query: 201 SSERIWSEINKLLEAKNP 218 ++ER+W E K E NP Sbjct: 173 TAERVWLETQKAFETDNP 190 >gi|159130057|gb|EDP55171.1| tRNA nucleotidyltransferase [Aspergillus fumigatus A1163] Length = 633 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 37/244 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL--------------------------PDRVMRIFSK 65 GG VRD L+ + DID+ + + P+ M+ Sbjct: 154 TGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKDYLDIPENLEKYKRNHPNGHMKEAIV 213 Query: 66 TRYKVIPTSISYGTIKIICRKKY---FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRD 121 + +K+ ++ + K + D+ LR ++ TD R ++ F + D+LRRD Sbjct: 214 SLHKIEANPEKSKHLETVTTKIFGFDIDLVNLRKEMYTDDSRNPQMEFG-TAEEDALRRD 272 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 TINAL+ + + KV D G G +D+R++ I+ + + +D LR+LR RF + G Sbjct: 273 ATINALFYNLNESKVEDLTGRGFSDMRDKIIRTPMEPYQTFKDDPLRVLRLIRFASRLGY 332 Query: 180 K---NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 K N + + I LKI S ER+ +E+ K+L+ +P A+ + G++ IF Sbjct: 333 KIDPNTERAMQNSDISVALKLKI-SRERVGTELEKMLKGPDPRGALQLIDRLGLYHTIFA 391 Query: 237 DVQE 240 + Q+ Sbjct: 392 NHQD 395 >gi|42571593|ref|NP_973887.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative [Arabidopsis thaliana] gi|332192146|gb|AEE30267.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] Length = 603 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 20/224 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-------------TTILPDRVMRIFSKTRYKVIP-TSIS 76 + GG VRD L+ DIDIA L R + T + P S Sbjct: 112 VAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDKFKEYLSSRDEEVQGDTVIERNPDQSKH 171 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 T K+ ++ D LRS+ T+ + K D+ RRD TIN+L+ + G V Sbjct: 172 LETAKLRIYDQWIDFVNLRSEEYTENSRIPTMKFGTAKDDAFRRDLTINSLFYNINSGAV 231 Query: 136 IDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASI 191 D G++DL++ I A L+D LR+LR RF A +G ++ + + Sbjct: 232 EDLTERGIDDLKSGKIVTPLPAKATFLDDPLRVLRAVRFGARFGFTLDEELKEAASSEEV 291 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + G KI S ERI +EI+ ++ P++A+ ++ + +F +F Sbjct: 292 RVALGEKI-SRERIGNEIDLMISGNGPVSAVTYLSDLKLFSVVF 334 >gi|239918793|ref|YP_002958351.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665] gi|281414981|ref|ZP_06246723.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665] gi|239840000|gb|ACS31797.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665] Length = 483 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 73/322 (22%), Positives = 129/322 (40%), Gaps = 30/322 (9%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + D+D T PD + + +GTI Sbjct: 39 SLVGGPVRDLFLGRPSPDLDFTTDADPDASEAVGAGWADATWDVGRRFGTIGFRKAGWQL 98 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT R++ R +V F + D LRRDFT+NA+ +++D GG+ DL Sbjct: 99 EVTTYRAEQYDPASRKPQVAFGDSLEDDLLRRDFTVNAMALRLPALELVDPFGGMRDLHA 158 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ G +D LR++R RF + G + A++ + I+S+ER+ Sbjct: 159 GVLRTPGTPEDSFSDDPLRMMRAARFASQLGFAVAPEVEQAMTAMAER-ITIISAERVRE 217 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----------------LSQVIE 251 E+ KL+ +P + + G+ I ++ + L+ L Q +E Sbjct: 218 ELVKLVCGAHPRAGLDLLVRTGLADHILPELPALQLESDEHHRHKDVYAHSLTVLEQAME 277 Query: 252 AEQVFEWKI-DSLLRFIVLISWQDKKSILSMAKKFSL---------PREIRYFLISF-FN 300 E + D +LR L+ K + K ++ + +R L + F+ Sbjct: 278 LEGEYAPSTPDPVLRLAALLHDVGKPATRRFEKGGAVTFRHHETVGAKLVRKRLRALKFD 337 Query: 301 CNFNQKTLSIPEIKKLFYLYGD 322 + + + E+ FY YGD Sbjct: 338 NDTIKAVARLVELHMRFYGYGD 359 >gi|70732944|ref|YP_262715.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas fluorescens Pf-5] gi|123652489|sp|Q4K4W8|CCA_PSEF5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|68347243|gb|AAY94849.1| tRNA nucleotidyltransferase [Pseudomonas fluorescens Pf-5] Length = 409 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 22/197 (11%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGAVRD L+ V DID + + + + F P + + K Sbjct: 6 VGGAVRDRLLGRPVTDIDWVVVGASAEEMLAKGFR-------PVGADFPVF--LHPKSGE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y+ F + D +RRD TINA+ D+QG++ D G DL Sbjct: 57 EYALARTERKSGRGYSGFTFHASPEVTLEEDLIRRDLTINAMAEDEQGRLTDPYNGQKDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + A ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 117 EERLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAPETLELMRELSESGELQALT 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER W EI++ L P Sbjct: 174 AERSWKEISRALMEDQP 190 >gi|313886460|ref|ZP_07820176.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Porphyromonas asaccharolytica PR426713P-I] gi|332300372|ref|YP_004442293.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Porphyromonas asaccharolytica DSM 20707] gi|312924006|gb|EFR34799.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Porphyromonas asaccharolytica PR426713P-I] gi|332177435|gb|AEE13125.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Porphyromonas asaccharolytica DSM 20707] Length = 488 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 101/449 (22%), Positives = 184/449 (40%), Gaps = 71/449 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI----ATTILPDRVMR-IFSKTRYKVIPTSISYGTIKI 82 ++ +VGG VRD + DIDI + L V R I K + + ++GT ++ Sbjct: 33 ETYVVGGWVRDLFLQRPSDDIDIVCVGSGIALAKAVAREIGPKCQVHLF---ANFGTAQL 89 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDY 138 + + R + +V + D RRDFTINA L G+++D Sbjct: 90 RYKGVEVEFVGARRESYQRDSRKPIVEDGTLEDDQERRDFTINAMAISLNERTYGELVDP 149 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL++ I+ D +D LR++R RF + G ID A +K ++ +K Sbjct: 150 FYGLEDLQDYMIRTPVDPQVTFDDDPLRMMRAVRFASQLG-FFIDDAVFDAIVKLRERIK 208 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS----------LDQLSQ 248 I+S+ERI E+NK++ + P + M G+ + I +VQ + D L+ Sbjct: 209 IVSAERIIVELNKIMLSPRPSVGLSLMEQTGLLELILPEVQLLRGTETVVGVGHKDNLAH 268 Query: 249 VIEAEQVFEWKIDSL-LRFIVLI---------SWQDK-------------KSILSMAKKF 285 + K D+L LR+ L+ W + K + M ++ Sbjct: 269 TYQVVDQLAAKSDNLYLRWAALLHDIAKPKTKRWDAQQGWTFHNHNYIGAKMVPRMFRRL 328 Query: 286 SLPREIRY-FLISFFNCNFNQKTL-----SIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 LP + ++ + + +L + I++L + GD + + + L ++ Sbjct: 329 KLPLDSHMQYVAKLVDLHMRPSSLVDEGVTDSAIRRLLFDAGDDI-----EDLMTLVESD 383 Query: 340 LTHQDTCFILQVLSDIIHWKKPL-------------FPLTGDDVVK-YGIPPGKKVGNIL 385 +T ++ + QVL + ++ L P+ GD++++ +G+PP + VG + Sbjct: 384 VTSKNPKRVQQVLDNYQLIRRKLQEVEEKDRIRNFAPPIDGDEIMRLFGLPPSQIVGTLK 443 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K ++ E LL K A Sbjct: 444 ERIKNAILDGEIPNEYEPARELLLKEAAE 472 >gi|240278564|gb|EER42070.1| poly(A) polymerase [Ajellomyces capsulatus H143] gi|325090516|gb|EGC43826.1| poly(A) polymerase [Ajellomyces capsulatus H88] Length = 639 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 108/244 (44%), Gaps = 37/244 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSK--------TRYKVI----PTSISYG 78 VGG VRD L+ + DID+A + +R + +YK P+ I + Sbjct: 154 VGGWVRDKLLGVDSHDIDVAINCMTGERFGEGLKEYLDMPGNLEKYKACHSGNPSIIDFI 213 Query: 79 TIKIICRK------------KYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 I I + K F D+ LR + +D + + D+LRRD Sbjct: 214 KIHKIEKNPEKSKHLETATTKIFGLDIDLVNLRKETYSDDSRNPQIEIGTPEEDALRRDA 273 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 T+NAL+ + I D+ G GL D+ N+ I+ + +D LR+LR RF + G Sbjct: 274 TVNALFYNIHTDTIEDFTGKGLQDMENKIIRTPLAPYQTFKDDPLRVLRLIRFASRLG-Y 332 Query: 181 NIDSDGLVA----SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 IDSD A IKA KI + ERI E+ K L +PL A+ + G++ IF Sbjct: 333 TIDSDTEEAMKIEDIKAALKAKI-TQERIGVEMEKTLRGPDPLTALQRINRLGLYDTIFA 391 Query: 237 DVQE 240 + Q+ Sbjct: 392 NHQD 395 >gi|225010662|ref|ZP_03701132.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacteria bacterium MS024-3C] gi|225005215|gb|EEG43167.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacteria bacterium MS024-3C] Length = 475 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 18/233 (7%) Query: 28 KSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYKVIPTSI------SYGTI 80 ++ ++GG VRD L+ S +DID+ +L + +K + +P S +YGT Sbjct: 28 EAYVIGGFVRDYLLERGSPKDIDV--VVLGSGIS--LAKKLSEALPNSPEVTVFKNYGTA 83 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVI 136 + + + R + T VV + D RRDFTINAL D G ++ Sbjct: 84 MLKYQDLVLEFVGARKESYTHDSRNPVVENGSLEDDQNRRDFTINALAIGLNKDNYGVLV 143 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D GL+ L+N+ I +D LR+LR RF + ID++ L A + Sbjct: 144 DPFNGLDALKNKRIVTPLSPGITFSDDPLRMLRAIRFASQLN-FTIDAEALEAITVQRDR 202 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + I+S ERI EINK++ + P+ M+ G+ I ++ +L+ + +V Sbjct: 203 ISIISKERIVDEINKMMSSPMPILGFELMHKTGLLPLILPELS--ALEGIEEV 253 >gi|302406689|ref|XP_003001180.1| tRNA nucleotidyltransferase [Verticillium albo-atrum VaMs.102] gi|261359687|gb|EEY22115.1| tRNA nucleotidyltransferase [Verticillium albo-atrum VaMs.102] Length = 594 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPD----RVMRIFS-----KTRYKVIPTSISYGTIKI 82 GG VRD L+ + DID+A ++ +R + +R+ + P I G + Sbjct: 91 AGGWVRDKLLGTTSHDIDVAINVMTGLRFGERLREYCDVPELASRHGIEPDDI--GNLHR 148 Query: 83 IC----RKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 I + K + TT LR++ + + + D+LRRD T+NA Sbjct: 149 IAANPEKSKNLETTTVKVFGLDLDFVNLRTETYAEDSRNPAIDFGTAEEDALRRDATVNA 208 Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDS 184 L+ + +V D+ GGL D+R+R I+ + ++D LR+LR RF + G + + Sbjct: 209 LFFNLHTERVEDFTGGLADMRDRLIRTPLEPFQTFMDDPLRVLRLVRFASRLGFAIDPAA 268 Query: 185 DGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++A L+I +S ER+ E+ K+++ +P A+ + G+ I+ D Sbjct: 269 RDVMADPNVLAALRIKISRERVGVELEKMMKGHDPHRALQLIDELGLHHAIYTDT 323 >gi|86148795|ref|ZP_01067063.1| tRNA nucleotidyltransferase [Vibrio sp. MED222] gi|85833414|gb|EAQ51604.1| tRNA nucleotidyltransferase [Vibrio sp. MED222] Length = 438 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N+ D D + P + + K P + T + Sbjct: 33 LVGGAVRDKLLNIDSYDRDWVVVGSTPQEMESLGFTAVGKDFPVFLHPKTKE-------- 84 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F D + D +RRD TINA+ D G++ D G DL Sbjct: 85 EHALARTEKKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQDDNGQLYDPYHGQKDL 144 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLV--ASIKAKKGLKILS 201 +R ++ + DA +ED LR+LR RF A H+ + S+ +V + I L L+ Sbjct: 145 SDRILRHVSDA---FVEDPLRVLRVARFAAKLHHLNFTVASETMVMMSEIVQSGELAHLT 201 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E +K L +P Sbjct: 202 AERVWQEWHKSLSTPHP 218 >gi|262341231|ref|YP_003284086.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272568|gb|ACY40476.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 471 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 19/228 (8%) Query: 1 MVSIVQHKWFHDSDLINILSL-LNKGEDKSCIVGGAVRDSLMN-LSVQDIDIATTILPDR 58 + S +Q K FH I+S K + S +VGG VRD L+ + +D+DI T + Sbjct: 3 LSSAIQKKIFH------IVSFSAQKIKQDSYVVGGYVRDFLLGKIKSKDVDILTIGEGIK 56 Query: 59 VMRIFSKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR--DWK 114 + + SK + I +GT + C + + R + + Y++ F R + Sbjct: 57 LAQEVSKNMKPHPKIKIFRRFGTAMLKCENQKIEFVGSRKE--SYHFYSRKPFIRLGSLQ 114 Query: 115 ADSLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 D RRDFTINAL D G++ID GGL+DL+ + ++ ++ +D LR++R Sbjct: 115 DDQNRRDFTINALAISLNRDNYGELIDPFGGLSDLKKKILRTPLNSDITYSDDPLRMMRA 174 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 RF A + I+ + K K + I+S+ERI E NK+L ++ P Sbjct: 175 IRF-ATQLQFTIEEYSFKSIQKNKNRINIVSTERIIEEFNKILLSEKP 221 >gi|126640652|ref|YP_001083636.1| poly(A) polymerase I (PAP) [Acinetobacter baumannii ATCC 17978] Length = 443 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 102/207 (49%), Gaps = 11/207 (5%) Query: 40 LMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI 99 ++ L+ +D D T P ++ +F + + + ++ ++ T R+ Sbjct: 1 MLGLNPKDFDAVTNATPSQIKEVFGRRCRI---IGRRFELAHVYSGRELIEVATFRAPPK 57 Query: 100 TDGRYAKVVFTRD--W---KADSLRRDFTINALY-ADQQGKVIDYVGGLNDLRNRTIKFI 153 A + RD W + D RRDF+IN LY ++G V+D+ ++D++++T++ + Sbjct: 58 KAVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPRKGIVLDFCKAIDDVKSKTLRLL 117 Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VASIKAKKGLKILSSERIWSEINKL 212 GD R ED +R+LR RF A K ID L + ++ + L+ +S R++ E KL Sbjct: 118 GDPVQRFEEDPVRMLRTLRFAAKLNFK-IDPAILDIFDVEMTQLLRDVSPHRLYDESQKL 176 Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + + + + G++K++F D++ Sbjct: 177 FTMGHLARVLPMLIDFGVWKQLFADIR 203 >gi|71909744|ref|YP_287331.1| metal dependent phosphohydrolase [Dechloromonas aromatica RCB] gi|123626227|sp|Q477X0|CCA_DECAR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|71849365|gb|AAZ48861.1| metal dependent phosphohydrolase [Dechloromonas aromatica RCB] Length = 412 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 31/265 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD L+ D D + P+ ++ + K P + T + Sbjct: 5 IVGGAVRDELLGRPNADCDYVVVGATPETMLAQGFRPVGKDFPVFLHPNT--------HD 56 Query: 90 DITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y +F + D RRD TINA+ G ++D G DL Sbjct: 57 EYALARTERKTGHGYHGFIFHAAADVTLEEDLARRDLTINAMAKAADGTLVDPFNGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSE 203 ++T++ +G A ED +RILR RF A + + ++ + L+ S+ A + L +E Sbjct: 117 ASKTLRHVGPA---FAEDPVRILRIARFAARFSDFSVAPETLALMRSMVACGEVDHLVAE 173 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E+ K L + P + + G + +V D+L V + + +ID+ Sbjct: 174 RVWQELAKGLMEQKPSRMFEVLRDCGALARLLPEV-----DKLFGVPQRAD-YHPEIDTG 227 Query: 264 LRFIVLISWQDKKSILSMAKKFSLP 288 + +++I +++ F+LP Sbjct: 228 IHTMMVIDQSARRT-------FTLP 245 >gi|167736690|ref|ZP_02409464.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei 14] Length = 377 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+++ + K P + T + + Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPEQMAAQRFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSTDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +GDA +ED +RILR RF A + E + D+ L+ ++ + Sbjct: 118 GQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|219849143|ref|YP_002463576.1| polynucleotide adenylyltransferase region [Chloroflexus aggregans DSM 9485] gi|219543402|gb|ACL25140.1| Polynucleotide adenylyltransferase region [Chloroflexus aggregans DSM 9485] Length = 422 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 92/388 (23%), Positives = 154/388 (39%), Gaps = 37/388 (9%) Query: 31 IVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTS-ISYGTIKIICRKKY 88 +VGG VRD L+ L + +DID+A R+ + + T I ++GT + Sbjct: 32 LVGGVVRDLLLELPIGRDIDLAVEGDVTRLAPLLATTLGGTITARHPAFGTATLAVDHWI 91 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVI-----DYV 139 D+ R++ VV D RRDF+INA L AD G+++ D + Sbjct: 92 IDLAQTRTEYYPQPAVLPVVQPAPLTTDLARRDFSINAMAIRLVAD-DGRLLPMPLFDPL 150 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LK 198 G DL R ++ + D R +D RILR R A + G L Sbjct: 151 NGAVDLAARRLRLLHDRSLR--DDPTRILRGVRLAARLNLTPEPATAAQIETALTNGYLA 208 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +L+ ERI +E+ L +P + + I + S L++ + + E Sbjct: 209 LLTPERIQTELCLTLSEPDPAAVVALADRWQVTSHIIPGLHWSS--ALAERLARYRHDEA 266 Query: 259 KIDSLLRFIVLISW-----QDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQK---TLS 309 I L +I+ + + ++ +++ LP R LI + Q TLS Sbjct: 267 GIAGLAPAEPVIAGLLLYDLSEDDLQAVRQRYHLPTPFRRLLIELSRLRSLAQSITTTLS 326 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 ++ L + Y + LHY T I + L + W+ PLTGDD Sbjct: 327 PSQLDALLHSYSTATIA-------VLHYAA-TTSTASLIARYLRE---WRPLRPPLTGDD 375 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSF 397 + G+ PG ++G +L + ++ + Sbjct: 376 LQAMGVAPGPQLGRLLRDLRAATLDGTV 403 >gi|330505273|ref|YP_004382142.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas mendocina NK-01] gi|328919559|gb|AEB60390.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas mendocina NK-01] Length = 409 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 20/196 (10%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V ++D + ++++ + + P + T + + Sbjct: 6 VGGAVRDRLLGRPVSEVDWVVVGASAEQMLELGYRPVGADFPVFLHPQTGE--------E 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D +RRD T+NA+ D G++ID GG DL+ Sbjct: 58 YALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTVNAMAEDDHGRLIDPYGGQEDLQ 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ + L L++ Sbjct: 118 ARLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFSVAPETLALMRQLAESGELGHLTA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER W EI++ L P Sbjct: 175 ERSWKEISRALMEPRP 190 >gi|167031441|ref|YP_001666672.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas putida GB-1] gi|189081875|sp|B0KJ86|CCA_PSEPG RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166857929|gb|ABY96336.1| Polynucleotide adenylyltransferase region [Pseudomonas putida GB-1] Length = 368 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 18/195 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID ++ V + +K Y+ + + K + Sbjct: 6 VGGAVRDRLLGRPVSDIDW--LVVGATVEEMLAKG-YRPVGADFPV----FLHPKTGEEY 58 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 R++ + Y F + D +RRD TINA+ D+ G V D G +DL Sbjct: 59 ALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYHGKDDLDQ 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A Y ++ L+ I A L+ L++E Sbjct: 119 RLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLELMRQISASGELQALTAE 175 Query: 204 RIWSEINKLLEAKNP 218 R W EI + L P Sbjct: 176 RSWKEIERALMEARP 190 >gi|332308267|ref|YP_004436118.1| poly(A) polymerase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175596|gb|AEE24850.1| poly(A) polymerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 474 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 29/246 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L L+ ++ +VGG VRD L+ +D D+ T P++V +F R Sbjct: 49 NALKVLYRLHNNGYQAFLVGGCVRDILLGKKPKDFDVTTDATPEQVKELFRNCRL----I 104 Query: 74 SISYGTIKIICRKKYFDITTLR-----------SDLITDGRYAKVVFTRDW--------- 113 + ++ ++ ++ T R +D D + + D Sbjct: 105 GRRFRLAHVVFGREIIEVATFRGHHPSQDEDKENDKDKDSKGQNLSKQSDHGQLLRDNVF 164 Query: 114 ---KADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFT+NA+Y + I D+ G+ ++NR I IGD R ED +R+LR Sbjct: 165 GSIEEDAERRDFTVNAMYYNIADYSIHDFANGMQAVKNRQITMIGDPATRYREDPVRMLR 224 Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF G K I + + + + R++ E+ KLL + L+ + G Sbjct: 225 AVRFSVKLGMK-ISPETAKPIYELAPLMANIPPARLFEEVLKLLLSGQGLDTYKLLNEFG 283 Query: 230 IFKEIF 235 +F+++F Sbjct: 284 LFEQLF 289 >gi|218262165|ref|ZP_03476724.1| hypothetical protein PRABACTJOHN_02398 [Parabacteroides johnsonii DSM 18315] gi|218223571|gb|EEC96221.1| hypothetical protein PRABACTJOHN_02398 [Parabacteroides johnsonii DSM 18315] Length = 476 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 7/197 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIPTSISYGTIKIICR 85 ++ ++GG VRD ++ +DID+ + + +K R + ++GT ++ Sbjct: 30 EAYVIGGYVRDIFLHRPSKDIDVVAVGSGIELAKAVAKKLGRGAYLSVFKNFGTAQVKAG 89 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + R + T +V + D RRDFTINAL D+ G+++D G Sbjct: 90 DLELEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINALALCLNKDRYGELVDPFDG 149 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L D+ N I+ D +D LR++R RF + G ID D A + K+ + I+S Sbjct: 150 LTDMDNLLIRTPLDPDITFSDDPLRMMRAVRFASQLG-FFIDPDTFDAIERNKERISIIS 208 Query: 202 SERIWSEINKLLEAKNP 218 ERI E+NK++ + P Sbjct: 209 KERIVDELNKIVLSPKP 225 >gi|188532576|ref|YP_001906373.1| tRNA nucleotidyl transferase [Erwinia tasmaniensis Et1/99] gi|226702055|sp|B2VGJ4|CCA_ERWT9 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|188027618|emb|CAO95468.1| tRNA nucleotidyl transferase [Erwinia tasmaniensis Et1/99] Length = 407 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 28/204 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVM-RIFSKTR--YKVI--PTSISYGTIK 81 K+ +VGGAVRD L+NL V+D D + P +++ R + + + V P S + Sbjct: 2 KTYLVGGAVRDGLLNLPVKDKDWVVVGASPQQMLDRGYQQVGRDFPVFLHPESHEEYALA 61 Query: 82 IICRKK---YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 RK Y T + +T + D RRD TINA+ D G D Sbjct: 62 RTERKSGRGYTGFTCYSAPDVT------------LEQDLARRDLTINAIAQDAGGNYCDP 109 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKK 195 GG DL+ R ++ + A + ED LR+LR RF FAH + D L+ Sbjct: 110 YGGRADLQQRLLRHVSGAFN---EDPLRVLRVARFAARFAHLNFRIADETLLLMQAMTHS 166 Query: 196 G-LKILSSERIWSEINKLLEAKNP 218 G L L+ ER+W E L+ +P Sbjct: 167 GELHHLTPERVWKETELALQTPSP 190 >gi|167717649|ref|ZP_02400885.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei DM98] Length = 401 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+++ + K P + T + + Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPEQMAAQRFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +GDA +ED +RILR RF A + E + D+ L+ ++ + Sbjct: 118 GQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|326493460|dbj|BAJ85191.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 359 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 26/227 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDR--VMRIFSKTRY-----------KVIP-TSIS 76 + GG VRD L+ DIDIA + + R+ +++ + P S Sbjct: 101 VAGGWVRDKLLGKDSADIDIALDNMTGQNFCERVNEYSKFMGEEQKGIGVIQCNPDQSKH 160 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 T +++ + D LRS+ + V K D+LRRD TIN+L+ + K++ Sbjct: 161 LETARMLIYDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDALRRDLTINSLFFNINTKLV 220 Query: 137 -DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG------EKNIDSDGLV 188 D G GL DL+ I A L+D LR+LR RF A + K SD Sbjct: 221 EDLTGRGLEDLKKGLIDTPLPAKSTFLDDPLRVLRAIRFAARFSFTLAVDLKEAASD--- 277 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +K++ G KI S ERI E++ ++ K+P+NA+ ++ + G+F +F Sbjct: 278 EKVKSELGSKI-SRERIGHEVDLMMSDKHPVNAMRYIRDLGLFYVVF 323 >gi|254445871|ref|ZP_05059347.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Verrucomicrobiae bacterium DG1235] gi|198260179|gb|EDY84487.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Verrucomicrobiae bacterium DG1235] Length = 473 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 11/203 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPT 73 L L L +VGG++RD+L+ L +D D+ L D + + +K K Sbjct: 18 LKQALQTLESAGATCRVVGGSIRDALLGLEPKDFDVEVYGLDLDSIAQTLAKL-GKTDLV 76 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---KADSL-RRDFTINA-LY 128 ++ +K+ + +D R + + + D + ++L RRDFTINA LY Sbjct: 77 GKAFAVVKLWTHGEEYDFAIPRRESKSGSGHRGFTIETDAHLSEEEALKRRDFTINALLY 136 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 +VIDY GL DL R ++ + A ED LR+LR +F + E + D Sbjct: 137 DHATSEVIDYFNGLEDLERRILRHVSPA---FSEDPLRVLRAMQFAGRF-EMELHPDTAA 192 Query: 189 ASIKAKKGLKILSSERIWSEINK 211 K L ER+W+E K Sbjct: 193 LCRKIGHEFWTLPKERVWTEWEK 215 >gi|3287692|gb|AAC25520.1| Similar to tRNA adenylyltransferase gb|U15930 from Lupinus albus. EST gb|AA721797 comes from this gene [Arabidopsis thaliana] Length = 555 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 20/224 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-------------TTILPDRVMRIFSKTRYKVIP-TSIS 76 + GG VRD L+ DIDIA L R + T + P S Sbjct: 112 VAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDKFKEYLSSRDEEVQGDTVIERNPDQSKH 171 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 T K+ ++ D LRS+ T+ + K D+ RRD TIN+L+ + G V Sbjct: 172 LETAKLRIYDQWIDFVNLRSEEYTENSRIPTMKFGTAKDDAFRRDLTINSLFYNINSGAV 231 Query: 136 IDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASI 191 D G++DL++ I A L+D LR+LR RF A +G ++ + + Sbjct: 232 EDLTERGIDDLKSGKIVTPLPAKATFLDDPLRVLRAVRFGARFGFTLDEELKEAASSEEV 291 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + G KI S ERI +EI+ ++ P++A+ ++ + +F +F Sbjct: 292 RVALGEKI-SRERIGNEIDLMISGNGPVSAVTYLSDLKLFSVVF 334 >gi|53724555|ref|YP_104787.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia mallei ATCC 23344] gi|67641531|ref|ZP_00440308.1| multifunctional CCA protein [Burkholderia mallei GB8 horse 4] gi|121600304|ref|YP_994281.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia mallei SAVP1] gi|124385062|ref|YP_001028069.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia mallei NCTC 10229] gi|126448131|ref|YP_001082877.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia mallei NCTC 10247] gi|167001524|ref|ZP_02267319.1| multifunctional CCA protein [Burkholderia mallei PRL-20] gi|167822306|ref|ZP_02453777.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei 9] gi|167900894|ref|ZP_02488099.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei NCTC 13177] gi|226199762|ref|ZP_03795313.1| multifunctional CCA protein [Burkholderia pseudomallei Pakistan 9] gi|254175171|ref|ZP_04881832.1| multifunctional CCA protein [Burkholderia mallei ATCC 10399] gi|254182147|ref|ZP_04888744.1| multifunctional CCA protein [Burkholderia pseudomallei 1655] gi|254196211|ref|ZP_04902635.1| multifunctional CCA protein [Burkholderia pseudomallei S13] gi|254201889|ref|ZP_04908253.1| multifunctional CCA protein [Burkholderia mallei FMH] gi|254207222|ref|ZP_04913573.1| multifunctional CCA protein [Burkholderia mallei JHU] gi|254359725|ref|ZP_04975996.1| multifunctional CCA protein [Burkholderia mallei 2002721280] gi|73619759|sp|Q62EU1|CCA_BURMA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233845|sp|A3MRJ1|CCA_BURM7 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233846|sp|A2S800|CCA_BURM9 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233847|sp|A1V7S8|CCA_BURMS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|52427978|gb|AAU48571.1| tRNA nucleotidyltransferase [Burkholderia mallei ATCC 23344] gi|121229114|gb|ABM51632.1| tRNA nucleotidyltransferase [Burkholderia mallei SAVP1] gi|124293082|gb|ABN02351.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229] gi|126241001|gb|ABO04094.1| multifunctional CCA protein [Burkholderia mallei NCTC 10247] gi|147747783|gb|EDK54859.1| multifunctional CCA protein [Burkholderia mallei FMH] gi|147752764|gb|EDK59830.1| multifunctional CCA protein [Burkholderia mallei JHU] gi|148028939|gb|EDK86871.1| multifunctional CCA protein [Burkholderia mallei 2002721280] gi|160696216|gb|EDP86186.1| multifunctional CCA protein [Burkholderia mallei ATCC 10399] gi|169652954|gb|EDS85647.1| multifunctional CCA protein [Burkholderia pseudomallei S13] gi|184212685|gb|EDU09728.1| multifunctional CCA protein [Burkholderia pseudomallei 1655] gi|225928113|gb|EEH24149.1| multifunctional CCA protein [Burkholderia pseudomallei Pakistan 9] gi|238522479|gb|EEP85923.1| multifunctional CCA protein [Burkholderia mallei GB8 horse 4] gi|243062728|gb|EES44914.1| multifunctional CCA protein [Burkholderia mallei PRL-20] Length = 413 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+++ + K P + T + + Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPEQMAAQRFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +GDA +ED +RILR RF A + E + D+ L+ ++ + Sbjct: 118 GQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|76578249|gb|ABA47724.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710b] Length = 432 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+++ + K P + T + + Sbjct: 25 VGGAIRDALLGLPVRDRDYVVVGATPEQMAAQRFRPVGKDFPVFLHPDT--------HEE 76 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 77 YALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +GDA +ED +RILR RF A + E + D+ L+ ++ + Sbjct: 137 GQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDAGEVD 193 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 194 ALVPERVWQELARGLMEAK 212 >gi|325182899|emb|CCA17355.1| tRNA nucleotidyltransferase putative [Albugo laibachii Nc14] Length = 559 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 25/233 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK-- 87 + GG VRD L+ L DIDIA TI + +K + + S G IK+ + Sbjct: 86 VAGGWVRDKLLGLDSSDIDIALDTITGSGFAQFVNKYEKEHGGKTHSIGVIKVNPEQSKH 145 Query: 88 ------------YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 + D LRS+ + D R V F + D+ RRDFTIN+L+ + Sbjct: 146 LETITMKFDDIGWVDFVNLRSETYSKDHRIPDVQFGTP-QEDAERRDFTINSLFYNISND 204 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVA 189 K+ D+ G+ DL+ I+ D+ L+D LR+LR RF + + ++N+ + Sbjct: 205 KIEDFTERGIGDLKKGIIRTPLDSRVTFLDDPLRVLRAIRFASRFNFKLDENLRQAAQLD 264 Query: 190 SIKAKKGLKILSSERIWSEINKLLE--AKNPLNAIVHMYNGGIFKEIFLDVQE 240 +K K+ S ER+ E+ +LE + +P A M+ G+FK +FL Q+ Sbjct: 265 DVKDALIQKV-SRERVGKELLGMLEGPSAHPQRAFTLMHELGLFKCVFLVPQQ 316 >gi|311269186|ref|XP_003132380.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like, partial [Sus scrofa] Length = 245 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 17/250 (6%) Query: 165 LRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 LRIL F RF+ +K D D L A + KGL +S ERIW E+ K+L N +N + Sbjct: 8 LRIL-FCRFYGKIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILTG-NHVNHL 65 Query: 223 VH-MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281 +H MY+ + I L SL++ ++V + + F K +LL + + QD + L + Sbjct: 66 IHLMYDLDVAPYIGLPAN-ASLEEFNKVSKNVEGFSPKPMTLLTSLFRV--QDDVTKLDL 122 Query: 282 AKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 K S + + F++ K S P ++ + A ++ L Y Sbjct: 123 RLKISKEEKNLGLFIVKNRKDLIKAKDSSEPLKPYQDFIIDCRESDATARVCELLKYQG- 181 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 + C +L ++ W P FP++G D+ K GI GK++G +L +++W S +Q+ Sbjct: 182 ---EHC----LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQME 234 Query: 401 QEDLHHLLRK 410 +++L ++K Sbjct: 235 KDELLSYIKK 244 >gi|156049161|ref|XP_001590547.1| hypothetical protein SS1G_08287 [Sclerotinia sclerotiorum 1980] gi|154692686|gb|EDN92424.1| hypothetical protein SS1G_08287 [Sclerotinia sclerotiorum 1980 UF-70] Length = 516 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 28/233 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILP----DRVMRIFSKTRYKVIPTSISYGTIKIICR-- 85 GG VRD L+ + DID A ++ MR + + + ++ +K + + Sbjct: 41 AGGWVRDKLLGIESHDIDTAINVMTGYNFSLKMREYLEDTENLKKHALEAKDVKKLYKIA 100 Query: 86 -----KKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 K+ + T LR + T+ + + D+LRRD TINAL+ Sbjct: 101 ANPEKSKHLETATTNIFQFDVDFVNLRKETYTEDSRNPQMEPGTAEEDALRRDATINALF 160 Query: 129 ADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDG 186 + ++ D+ GGL D++ + IK + + +D LR+LR RF + K + +S+ Sbjct: 161 YNLHTDIVEDFTGGLADMKAKVIKTPLEPYTTFKDDPLRVLRLIRFASRLDFKIDSESEK 220 Query: 187 LVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNG-GIFKEIFLD 237 + + + LK+ +S ER+ E+ K+L+ NP ++ H+++ G++ IF D Sbjct: 221 FMGNPAIMEALKLKISRERVGVEVEKMLKGNNPWQSL-HLFDRLGLYSTIFTD 272 >gi|237810451|ref|YP_002894902.1| multifunctional CCA protein [Burkholderia pseudomallei MSHR346] gi|237506472|gb|ACQ98790.1| multifunctional CCA protein [Burkholderia pseudomallei MSHR346] Length = 413 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+++ + K P + T + + Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPEQMAAQRFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +GDA +ED +RILR RF A + E + D+ L+ ++ + Sbjct: 118 GQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|53717906|ref|YP_106892.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei K96243] gi|126451805|ref|YP_001064555.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei 1106a] gi|162210101|ref|YP_331871.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei 1710b] gi|167813789|ref|ZP_02445469.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei 91] gi|167843896|ref|ZP_02469404.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei B7210] gi|167892398|ref|ZP_02479800.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei 7894] gi|167909113|ref|ZP_02496204.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei 112] gi|217425090|ref|ZP_03456586.1| multifunctional CCA protein [Burkholderia pseudomallei 576] gi|242314343|ref|ZP_04813359.1| multifunctional CCA protein [Burkholderia pseudomallei 1106b] gi|254188077|ref|ZP_04894589.1| multifunctional CCA protein [Burkholderia pseudomallei Pasteur 52237] gi|254260529|ref|ZP_04951583.1| multifunctional CCA protein [Burkholderia pseudomallei 1710a] gi|254295806|ref|ZP_04963263.1| multifunctional CCA protein [Burkholderia pseudomallei 406e] gi|73619760|sp|Q63YC3|CCA_BURPS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233848|sp|A3NQD4|CCA_BURP0 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|52208320|emb|CAH34253.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei K96243] gi|126225447|gb|ABN88987.1| multifunctional CCA protein [Burkholderia pseudomallei 1106a] gi|157805662|gb|EDO82832.1| multifunctional CCA protein [Burkholderia pseudomallei 406e] gi|157935757|gb|EDO91427.1| multifunctional CCA protein [Burkholderia pseudomallei Pasteur 52237] gi|217392110|gb|EEC32136.1| multifunctional CCA protein [Burkholderia pseudomallei 576] gi|242137582|gb|EES23984.1| multifunctional CCA protein [Burkholderia pseudomallei 1106b] gi|254219218|gb|EET08602.1| multifunctional CCA protein [Burkholderia pseudomallei 1710a] Length = 413 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+++ + K P + T + + Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPEQMAAQRFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +GDA +ED +RILR RF A + E + D+ L+ ++ + Sbjct: 118 GQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|167917152|ref|ZP_02504243.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei BCC215] Length = 413 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+++ + K P + T + + Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPEQMAAQRFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +GDA +ED +RILR RF A + E + D+ L+ ++ + Sbjct: 118 GQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|319903055|ref|YP_004162783.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides helcogenes P 36-108] gi|319418086|gb|ADV45197.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides helcogenes P 36-108] Length = 482 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 7/213 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKYF 89 VGG VRD + +DID+ + + + S+ ++GT ++ R Sbjct: 35 VGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGRRLGRGAHVSVFKNFGTAQLKYRGVEV 94 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDL 145 + R + T +V + D RRDFTINAL + G+++D GG+ D+ Sbjct: 95 EFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINALAVCLNRARYGELVDPFGGMQDM 154 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + RTI+ D +D LR++R RF ID + + ++ + I+S ERI Sbjct: 155 KERTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDGTFDSLCRNRERISIISKERI 213 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 E+NK++ + P + + G+ + IF ++ Sbjct: 214 ADELNKIILSPIPSRGFIDLDRCGLLELIFPEL 246 >gi|254567906|ref|XP_002491063.1| ATP (CTP):tRNA-specific tRNA nucleotidyltransferase [Pichia pastoris GS115] gi|238030860|emb|CAY68783.1| ATP (CTP):tRNA-specific tRNA nucleotidyltransferase [Pichia pastoris GS115] gi|328352411|emb|CCA38810.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Pichia pastoris CBS 7435] Length = 520 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 26/230 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP-----------------DRVMRIFSKTRYKVIPT 73 I GG VRD L+ S DIDIA L D + I S + +K+ Sbjct: 51 ITGGWVRDKLLGRSSHDIDIAINTLSGESFAEKLVSFIKENHKDEIESILSSSIHKINKN 110 Query: 74 SISYGTIKIICRKKY---FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++ K Y D LR++ T+ + + D+LRRD T+NAL+ + Sbjct: 111 PDKSKHLETCTTKLYGIDIDFVNLRNEKYTEESRIPTIDYGTPQEDALRRDATLNALFYN 170 Query: 131 -QQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ D+ GL DL+ ++ + L+D LR LR RF + +G ++ D L Sbjct: 171 LTTDQIEDFTEKGLIDLKQGVLRTPLEPSKTFLDDPLRCLRLIRFASVFG-FSVSEDALQ 229 Query: 189 A--SIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 A K K+ L +S ERI EI+K+L +K+P+ + + + + IF Sbjct: 230 AMKQPKIKEALNAKISRERIGVEIDKILVSKDPIRGLKILRDTNLLDAIF 279 >gi|315023502|gb|EFT36508.1| tRNA nucleotidyltransferase [Riemerella anatipestifer RA-YM] gi|325335276|gb|ADZ11550.1| tRNA nucleotidyltransferase/poly(A) polymerase [Riemerella anatipestifer RA-GD] Length = 476 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 8/213 (3%) Query: 29 SCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICR 85 + IVGG VRD LM V DID T + + +K + S+ +YGT I + Sbjct: 30 AYIVGGYVRDLLMKRQVPTDIDFVTEQSGIELAQAVAKELDSNLKVSVFKTYGTAMIKWK 89 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGG 141 + R + ++ V + D RRDFTINA L + G+++D GG Sbjct: 90 GLELEFVGARKESYSEDSRKPAVEQGSLEDDQKRRDFTINAMAISLGKEDFGRLVDPFGG 149 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + DL ++ +K + +D LR++R RF + K ++ + L A + +KI+S Sbjct: 150 VQDLESKILKTPLEPLQTYSDDPLRMMRAIRFASTLNFK-VEQNSLDAIKQEADRIKIVS 208 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 ERI E NK++ ++ P + + + G+ ++I Sbjct: 209 MERIMVEFNKIMLSEKPSIGLKLLDDTGLLEKI 241 >gi|308050970|ref|YP_003914536.1| metal dependent phosphohydrolase [Ferrimonas balearica DSM 9799] gi|307633160|gb|ADN77462.1| metal dependent phosphohydrolase [Ferrimonas balearica DSM 9799] Length = 407 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 18/196 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ L V+D D ++ S Y+ + S + K + Sbjct: 5 LVGGAVRDELLGLKVKDRD---HLVVGASAEQMSALGYRQVGKSFPV----FLHPKSGEE 57 Query: 91 ITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ Y F T + D +RRD TINA+ D+QG + D G DL Sbjct: 58 YALARTEKKVGHGYGGFDFDAAPTVTLEEDLIRRDLTINAMARDEQGVIHDPYNGRADLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + DA +ED LR+LR RF A + ++ L+ + L LS+ Sbjct: 118 ARLLRHVSDA---FVEDPLRVLRVARFAARFHGLGFTVADETLALMQQLSDSGELDYLSA 174 Query: 203 ERIWSEINKLLEAKNP 218 ER+W E + L +P Sbjct: 175 ERVWQETERALGEPHP 190 >gi|317128267|ref|YP_004094549.1| CBS domain containing protein [Bacillus cellulosilyticus DSM 2522] gi|315473215|gb|ADU29818.1| CBS domain containing protein [Bacillus cellulosilyticus DSM 2522] Length = 864 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 14/199 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ ++GG VRD L+ +D+DI ++ M+ + + K + K K Sbjct: 472 RAYLIGGMVRDLLLQRPNEDVDI---VVEGDGMKFATYLQEKFGGQVRLHEEFKTATWKH 528 Query: 88 ----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYV 139 D+T+ R++ V K D RRDFTINA L+ DQ G +IDY Sbjct: 529 PNNLKIDVTSARTEFYDFPAALPKVEMSTMKEDLYRRDFTINAMGIALHKDQFGVLIDYF 588 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 G NDL N+ IK + + +ED RILR RF + K +D + + + +A + Sbjct: 589 QGYNDLLNKKIKILYNL--SFIEDPTRILRAVRFECRFQFK-MDEETFLFAKEAVNNIPS 645 Query: 200 LSSERIWSEINKLLEAKNP 218 LS R+ +E+ K+ + +NP Sbjct: 646 LSKTRLSNELKKMFQEENP 664 >gi|308158897|gb|EFO61457.1| tRNA-nucleotidyltransferase, putative [Giardia lamblia P15] Length = 536 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 20/250 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT---------TILPDRVMRIFSK 65 L+ L+ +NK + + GG VRD L+ DIDIA TI+ + +M + Sbjct: 29 LLAALASVNKHDTTLRVAGGWVRDKLLGYESHDIDIAIDNMTGVELGTIINEYIMSQ-GE 87 Query: 66 TRYKV-----IPTSISYGTIKIICRKKY-FDITTLRSDLIT-DGRYAKVVFTRDWKADSL 118 T +K+ P + I Y D+ LR++ R D+L Sbjct: 88 TVHKMGVVSQNPEKSKHLETACITVCGYDVDLVNLRAESYQKTSRVPNATKFGSPHEDAL 147 Query: 119 RRDFTINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NAL+ + + I D+ G GL DL++R I+ D + +D LRILR RF Sbjct: 148 RRDFTVNALFYNINTREIEDFTGQGLADLKSRLIRTPLDCNITFYDDPLRILRAIRFSKR 207 Query: 177 YG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G E + S + L+I+S +R E+ ++L + L + +++ IF+EIF Sbjct: 208 LGFELDKKMYRATESKELTARLQIVSRQRYNKELIEILSGEAALCGLRGLFDMHIFEEIF 267 Query: 236 LDVQEISLDQ 245 L + S+++ Sbjct: 268 LHILNTSMNK 277 >gi|126440528|ref|YP_001057313.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia pseudomallei 668] gi|134283564|ref|ZP_01770263.1| multifunctional CCA protein [Burkholderia pseudomallei 305] gi|166233849|sp|A3N4P2|CCA_BURP6 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|126220021|gb|ABN83527.1| multifunctional CCA protein [Burkholderia pseudomallei 668] gi|134244973|gb|EBA45068.1| multifunctional CCA protein [Burkholderia pseudomallei 305] Length = 413 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+++ + K P + T + + Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPEQMAAQRFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +GDA +ED +RILR RF A + E + D+ L+ ++ + Sbjct: 118 GQADLRAKLFRHVGDA---FVEDPVRILRVARFAARFAEFAVAPDTAALMRAMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|297845288|ref|XP_002890525.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp. lyrata] gi|297336367|gb|EFH66784.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp. lyrata] Length = 603 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 20/224 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP-----DRVMRIFSKTRYKVIPTSI---------S 76 + GG VRD L+ DIDIA + D+ S +V +I Sbjct: 111 VAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDKFKEYLSSRDEEVQGDTIIERNPDQSKH 170 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 T K+ ++ D LRS+ T+ + K D+ RRD TIN+L+ + G V Sbjct: 171 LETAKMRIYDQWIDFVNLRSEEYTENSRIPTMKFGTAKEDAFRRDLTINSLFYNINSGSV 230 Query: 136 IDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASI 191 D G++DL++ I A L+D LR+LR RF A +G + + + Sbjct: 231 EDLTERGIDDLKSGKIVTPLPAKATFLDDPLRVLRAIRFGARFGFTLDDELKEAASSEEV 290 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + G KI S ERI +EI+ ++ P++A+ ++ +F +F Sbjct: 291 RVALGEKI-SRERIGNEIDLMISGNGPVSAVTYLSELKLFPVVF 333 >gi|190347325|gb|EDK39574.2| hypothetical protein PGUG_03672 [Meyerozyma guilliermondii ATCC 6260] Length = 452 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 95/175 (54%), Gaps = 11/175 (6%) Query: 84 CRKKYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDY 138 C K F D LRS+ T V+ + D+LRRD T+NAL+ + Q K+ D+ Sbjct: 22 CTTKLFGLDIDFVNLRSEKYTADSRVPVIECGTAEEDALRRDATLNALFYNLNQDKIEDF 81 Query: 139 VG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--SIKAKK 195 G GL+DLRN ++ + L+D LR+LR RF + + + I+S+ + A + + K+ Sbjct: 82 TGKGLDDLRNGILRTPLAPYQTFLDDPLRVLRLIRFSSTF-DFQIESNTIEAMTTDEIKQ 140 Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQ 248 L +S ER+ E++K+L NP+ + + + G+ IF + E ++++++Q Sbjct: 141 ALIHKISRERVGVELDKILMGNNPIYGLRLISHVGLTNSIFNVGTLENTINEINQ 195 >gi|299116100|emb|CBN74516.1| conserved unknown protein [Ectocarpus siliculosus] Length = 707 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 24/233 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTRYK------VIPTSISYG-- 78 + GG VRD L+ L +DIDIA T + + + K++ + VI + Sbjct: 80 VAGGWVRDKLLGLENEDIDIALDNCTGVAFAETVNAYLKSQGRDEGKVAVIEANPEQSKH 139 Query: 79 --TIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGK 134 T ++ R + D+ LR+++ +D R + + D+LRRDFT+NAL Y +GK Sbjct: 140 LETARMKIRGVWVDLVNLRTEVYRSDSRIPEASLG-TAEEDALRRDFTLNALFYNVNEGK 198 Query: 135 VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVAS 190 V D G G++DLR+ I+ +D LR+LR RF A +G +++ + + Sbjct: 199 VEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFALHEDLRAAARDSE 258 Query: 191 IKAKKGLKILSSERIWSEINKLLEAK--NPLNAIVHMYNGGIFKEIFLDVQEI 241 I+A G K+ S ER+ +E+ ++ K P A+ + + G+ ++ + + Sbjct: 259 IQAALGTKV-SRERVGTELCGMITGKMAQPALALSLLQDLGLAAAVYAPPEHL 310 >gi|146416643|ref|XP_001484291.1| hypothetical protein PGUG_03672 [Meyerozyma guilliermondii ATCC 6260] Length = 452 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 95/175 (54%), Gaps = 11/175 (6%) Query: 84 CRKKYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDY 138 C K F D LRS+ T V+ + D+LRRD T+NAL+ + Q K+ D+ Sbjct: 22 CTTKLFGLDIDFVNLRSEKYTADSRVPVIECGTAEEDALRRDATLNALFYNLNQDKIEDF 81 Query: 139 VG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--SIKAKK 195 G GL+DLRN ++ + L+D LR+LR RF + + + I+S+ + A + + K+ Sbjct: 82 TGKGLDDLRNGILRTPLAPYQTFLDDPLRVLRLIRFSSTF-DFQIESNTIEAMTTDEIKQ 140 Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQLSQ 248 L +S ER+ E++K+L NP+ + + + G+ IF + E ++++++Q Sbjct: 141 ALIHKISRERVGVELDKILMGNNPIYGLRLISHVGLTNSIFNVGTLENTINEINQ 195 >gi|229592961|ref|YP_002875080.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas fluorescens SBW25] gi|259585847|sp|C3K334|CCA_PSEFS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|229364827|emb|CAY52860.1| multifunctional cca protein [includes: cca-adding enzyme (ec 2.7.7.25) (ec 2.7.7.21) (trna nucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trna cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase (ec 3.1.3.-); 2',3'-cyclic phosphodiesterase (ec 3.1.4.-); phosphatase (ec 3.1.3.-)] [Pseudomonas fluorescens SBW25] Length = 409 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 83/198 (41%), Gaps = 24/198 (12%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGAVRD L+ + V DID + + + + F P + + K Sbjct: 6 VGGAVRDRLLGIKVTDIDRVVVGATTEEMLAKGFK-------PVGADF---PVFLDPKNG 55 Query: 90 DITTLRSDLITDGR-YAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 D L GR Y VF + D +RRD TINA+ D G + D GL D Sbjct: 56 DEYALARTERKSGRGYGGFVFHASPEVTLEEDLIRRDLTINAMAEDDDGNLTDPYHGLRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L R ++ + A ED LR+LR RF A Y ++ L+ + L+ L Sbjct: 116 LEARILRHVSPA---FAEDPLRVLRVARFAARYAHLGFTVAPETLELMRQLSESGELEAL 172 Query: 201 SSERIWSEINKLLEAKNP 218 + ER W EI++ L P Sbjct: 173 TPERSWKEISRALMEDQP 190 >gi|225024972|ref|ZP_03714164.1| hypothetical protein EIKCOROL_01861 [Eikenella corrodens ATCC 23834] gi|224942202|gb|EEG23411.1| hypothetical protein EIKCOROL_01861 [Eikenella corrodens ATCC 23834] Length = 413 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 19/218 (8%) Query: 31 IVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+ V+D D + P + + K P + T + Sbjct: 5 LVGGAVRDALLGREVKDRDWVVVGADAPAMLAAGYQPV-GKDFPVFLHPET--------H 55 Query: 89 FDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ T YA F + + D RRD TINA+ D G++ID GG D Sbjct: 56 EEYALARTERKTGRGYAGFTFHAEPDVTLEQDLQRRDLTINAMAQDAAGQIIDPFGGQAD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSE 203 L ++ + A ED +RILR RF A YG + ++ L+A + L +E Sbjct: 116 LAAGILRHVSPA---FAEDPVRILRTARFAARYGFQVAPETLRLMADMVQNGEADALVAE 172 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 R+W E + L P+ I + G + +V+ + Sbjct: 173 RVWQEFARGLMEARPVRMIEVLRQCGALAVLLPEVEAL 210 >gi|84394161|ref|ZP_00992893.1| tRNA nucleotidyltransferase [Vibrio splendidus 12B01] gi|84375220|gb|EAP92135.1| tRNA nucleotidyltransferase [Vibrio splendidus 12B01] Length = 438 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N+ D D + P + + K P + T + Sbjct: 33 LVGGAVRDKLLNIDSYDRDWVVVGSTPQEMENLGFTAVGKDFPVFLHPKTKE-------- 84 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F D + D +RRD TINA+ D +G++ D G DL Sbjct: 85 EHALARTERKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQDDKGQLYDPYHGQKDL 144 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLV--ASIKAKKGLKILS 201 +R ++ + DA +ED LR+LR RF A H+ + + +V + I L L+ Sbjct: 145 SDRVLRHVSDA---FVEDPLRVLRVARFAAKLHHLNFTVAPETMVMMSEIVQSGELAHLT 201 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E +K L +P Sbjct: 202 AERVWQEWHKSLSTPHP 218 >gi|325971159|ref|YP_004247350.1| poly(A) polymerase [Spirochaeta sp. Buddy] gi|324026397|gb|ADY13156.1| poly(A) polymerase [Spirochaeta sp. Buddy] Length = 422 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + + L ++ +VGGAVRD ++ +D DIAT+ P ++ R+F R Sbjct: 33 DKDALWAIKKLQASGAEAYLVGGAVRDMMLGTIPKDFDIATSASPRQIQRLFWNARI--- 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + K +++T RS + DG VF D+ RRDF+IN+ Y D Sbjct: 90 -IGKRFKLVHLVFKDKVLEVSTFRSGEEAMDGN--NNVFG-SIDQDAKRRDFSINSFYYD 145 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G+++D+ + D + + I I D ED +R++R ++ G ++ +A Sbjct: 146 PSTGQLLDFNHAMEDFKKKKISSIIDLDESFKEDPVRMVRAIKYSVSTGF-SLRWSVKMA 204 Query: 190 SIKAKKGLKILSSERIWSEINKLLEA 215 K L +S+ R+ E+NK+L + Sbjct: 205 IRKYSNELSRVSTSRLTEEVNKILAS 230 >gi|148979383|ref|ZP_01815489.1| tRNA nucleotidyltransferase [Vibrionales bacterium SWAT-3] gi|145961819|gb|EDK27112.1| tRNA nucleotidyltransferase [Vibrionales bacterium SWAT-3] Length = 438 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+N+ D D + P + + K P + T + Sbjct: 33 LVGGAVRDKLLNIDSYDKDWVVVGSTPQEMESLGFTAVGKDFPVFLHPKTKE-------- 84 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F D + D +RRD TINA+ D G + D G DL Sbjct: 85 EHALARTERKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQDDAGNLHDPYHGQQDL 144 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG-EKNIDSDGLVASIKAKKGLKILS 201 +R ++ + DA +ED LR+LR RF A H G ++ ++A+I L L+ Sbjct: 145 SDRILRHVSDA---FVEDPLRVLRVARFTAKLHHLGFTVAPETMAMMATIVESGELAHLT 201 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E +K L +P Sbjct: 202 AERVWQEWHKSLSTPHP 218 >gi|224536185|ref|ZP_03676724.1| hypothetical protein BACCELL_01051 [Bacteroides cellulosilyticus DSM 14838] gi|224522198|gb|EEF91303.1| hypothetical protein BACCELL_01051 [Bacteroides cellulosilyticus DSM 14838] Length = 476 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIPTSISYGTIKIICRKKY 88 +VGG VRD + +DID+ + K R + ++GT ++ R Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIEMAEALGKCLGRGAHVAVFKNFGTAQVKYRGTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNQSRFGELVDPFGGIED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ +TI+ D +D LR++R RF ID + + + + I+S ER Sbjct: 154 LKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDATFESLCRNCERISIISKER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK+L + P + + G+ IF ++ Sbjct: 213 IAEELNKILLSPVPSKGFIDLDRSGLLPLIFPEL 246 >gi|325854980|ref|ZP_08171696.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella denticola CRIS 18C-A] gi|325483958|gb|EGC86898.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella denticola CRIS 18C-A] Length = 474 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ +V K S+ ++GT ++ + Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKSVLGKKAHLSVFRNFGTAQVKYKDTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINAL ++ G+++D GG++D Sbjct: 94 VEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCLNRERFGELVDPFGGVDD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L N I+ D +D LR++R RF I+ + A + ++I+S ER Sbjct: 154 LWNGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFL-IEDETFEALERNADRIRIVSGER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I E+NK++ P V +Y G+ + I ++ ++LD Sbjct: 213 IEEELNKIMMTPTPSKGFVDLYRCGLLQLILPEL--VALD 250 >gi|156744039|ref|YP_001434168.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] gi|156235367|gb|ABU60150.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] Length = 458 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 34/226 (15%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI----------A 51 +S++QH L + L + + +VGGAVRD L+ L DID+ A Sbjct: 1 MSLLQHPLL--ETLAPLFDALARAGGRPLLVGGAVRDLLLGLPPTDIDVEVYGIDGQHLA 58 Query: 52 TTILP----DRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV 107 + P D V R F V+ + + + +Y + + Y Sbjct: 59 AALAPFGRVDAVGRSFG-----VLKLRLDGYNVDVALPARYRPAAAGEPGALAE--YDPS 111 Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 + R+ A RRDFTINAL G ++DY GG DL R + +A +D LR+ Sbjct: 112 LTPREALA---RRDFTINALALTPSGDLVDYFGGRADLEARRLCHTSEA---FGDDPLRV 165 Query: 168 LRFFRFFAHYGEK-NIDSDGLVAS-IKAKKGLKILSSERIWSEINK 211 LR +F A + + D+ L + + A GL + +RIW E +K Sbjct: 166 LRAMQFAARFNMRLAPDTAALCRTLLPASAGLPL---DRIWREWHK 208 >gi|206890724|ref|YP_002249348.1| polyA polymerase family protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742662|gb|ACI21719.1| polyA polymerase family protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 874 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 110/408 (26%), Positives = 175/408 (42%), Gaps = 47/408 (11%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVM---RIFSKTRYKVIPTSISYGTIKII-- 83 + +VGG VRD LM DIDI + D + + K KV P + T KI+ Sbjct: 476 AYLVGGTVRDLLMRRPSPDIDI--VVEGDGIAFAHELAKKIDGKVTPHP-RFATAKILKE 532 Query: 84 ------CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----G 133 ++ Y DI T R++ V T K D RRDFTINAL G Sbjct: 533 IKKDGEIKRFYIDIATARTEYYESPAALPKVETSSIKKDLYRRDFTINALAVKLNTKDFG 592 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIK 192 +ID+ GG D++++ I+ + + +ED R +R RF G K + ++ L+ Sbjct: 593 LLIDFFGGQRDIKDKKIRVLHNLS--FVEDPTRAIRAIRFSEKLGFKISKHTENLIKLAV 650 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-DQLSQVIE 251 + L R++ E+ LL+ P ++I + + G+ K I ++E ++ + L++ E Sbjct: 651 KMNIFEKLKGPRLYEELILLLKETLPHHSIKRLGDYGLLKLIHPAIEERTIYNDLAKAYE 710 Query: 252 AEQVFE---WKIDSLLRFIVL--ISWQ----DKKSILSMAKKFSLPREIRYFLISFFNCN 302 Q E K + FI L I W +++ +L + P I+ LI N + Sbjct: 711 TIQGIELLFLKEEYRKEFIYLMVILWNLNLSEREELLH---RICAPVNIKRELIE--NIS 765 Query: 303 FNQKTLSI--PEIKKLF--YLYGDKVMIAKLKIFLALHYNNLTHQDTCF-ILQVLSDIIH 357 QK L + E + F +Y + I L + Y + F L L DI Sbjct: 766 SAQKALQLFTAENSQEFNVQIYNLLKPLNIETIILMMIYAKEWQKKAIFNYLTKLKDI-- 823 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 KPL +TG+D+ K GI PG IL +E + +E++ Sbjct: 824 --KPL--ITGEDLKKLGIQPGPVYRKILESILREKLQGRLLSKEEEIE 867 >gi|289706703|ref|ZP_06503051.1| tRNA adenylyltransferase [Micrococcus luteus SK58] gi|289556623|gb|EFD49966.1| tRNA adenylyltransferase [Micrococcus luteus SK58] Length = 483 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/322 (22%), Positives = 129/322 (40%), Gaps = 30/322 (9%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + D+D T PD + + +GTI Sbjct: 39 SLVGGPVRDLFLGRPSLDLDFTTDADPDASEAVGAGWADATWDVGRRFGTIGFRKAGWQL 98 Query: 90 DITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRN 147 ++TT R++ R +V F + D LRRDFT+NA+ +++D GG+ DL Sbjct: 99 EVTTYRAEQYDPASRKPQVAFGDSLEDDLLRRDFTVNAMALRLPALELVDPFGGMQDLHA 158 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ G +D LR++R RF + G + A++ + I+S+ER+ Sbjct: 159 GVLRTPGTPEDSFSDDPLRMMRAARFASQLGFAVAPEVEQAMTAMAER-ITIISAERVRE 217 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ----------------LSQVIE 251 E+ KL+ +P + + G+ + ++ + L+ L Q +E Sbjct: 218 ELVKLVCGAHPRAGLDLLVRTGLADHVLPELPALQLESDEHHRHKDVYAHSLTVLEQAME 277 Query: 252 AEQVFEWKI-DSLLRFIVLISWQDKKSILSMAKKFSL---------PREIRYFLISF-FN 300 E + D +LR L+ K + K ++ + +R L + F+ Sbjct: 278 LEGEYAPSTPDPVLRLAALLHDVGKPATRRFEKGGAVTFRHHETVGAKLVRKRLRALKFD 337 Query: 301 CNFNQKTLSIPEIKKLFYLYGD 322 + + + E+ FY YGD Sbjct: 338 NDTIKAVARLVELHMRFYGYGD 359 >gi|288817886|ref|YP_003432233.1| poly A polymerase [Hydrogenobacter thermophilus TK-6] gi|288787285|dbj|BAI69032.1| poly A polymerase [Hydrogenobacter thermophilus TK-6] gi|308751485|gb|ADO44968.1| Polynucleotide adenylyltransferase region [Hydrogenobacter thermophilus TK-6] Length = 820 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 17/218 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS---KTRYKVIPTSISYGTIKIIC 84 K+ +VGG VRD L+ V D+D +V + + K + P +GT + Sbjct: 452 KAYLVGGVVRDILLGKEVWDVDFVVEGDAIKVAELLAQKHKVEFHPFP---EFGTAHVKV 508 Query: 85 RKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYV 139 + ++ T R + G Y V + + D LRRDFTINA+ G +IDY Sbjct: 509 KGLKLELATTRRETYPHPGAYPLVEYA-SLREDLLRRDFTINAMAVSVNSQDFGTLIDYF 567 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLK 198 GGL DL++R I+ + +ED +RILR RF G K + ++ L+ S + + Sbjct: 568 GGLRDLKDRLIRVLHPLS--FVEDPVRILRALRFAGRLGFKLSKSTERLLRSAVSLGAIS 625 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNG-GIFKEIF 235 RI +E+ L + L I+ +Y I EIF Sbjct: 626 SAPKGRIMNEVRLALREERFLE-ILELYRKYQILAEIF 662 >gi|197118675|ref|YP_002139102.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter bemidjiensis Bem] gi|197088035|gb|ACH39306.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter bemidjiensis Bem] Length = 875 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 13/235 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKKY- 88 VGG VRD L++ +Q++DI T+ D ++ F+ + + +GT I+ + Sbjct: 480 VGGFVRDLLLD--IQNMDIDVTVDGDGILFAETFASQFGCRVKSHQKFGTAVIVFPDGFK 537 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGKVIDYVGGLND 144 D+ + R + V K D RRDFT+N AL D GK+IDY G D Sbjct: 538 IDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTVNTLAIALNGDSFGKLIDYFGAYRD 597 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSE 203 L++R I+ + + +ED R+ R RF K ++ L+ + + L+ L Sbjct: 598 LQSRVIRVLHNLS--FVEDPTRVFRAIRFEQRLNFKIAKHTEDLIKNAVKMEFLEKLGGR 655 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 R+ +E+ ++L K PL + M + G+ + I V+ Q++ + E V W Sbjct: 656 RLLAELVQILREKEPLKGVGRMASLGLLRFIHPGVELTPAMQVA-LEETRYVVSW 709 >gi|315224075|ref|ZP_07865915.1| polyA polymerase family protein [Capnocytophaga ochracea F0287] gi|314945808|gb|EFS97817.1| polyA polymerase family protein [Capnocytophaga ochracea F0287] Length = 469 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 14/221 (6%) Query: 28 KSCIVGGAVRDSLMNLSV-QDIDIATT----ILPDRVM-RIFSKTRYKVIPTSISYGTIK 81 +S ++GG VRD L+ + +DID+ + L ++V R+ + + + ++GT Sbjct: 25 ESYVIGGFVRDYLLEKKLPKDIDVVSIGSGISLAEKVAERLPNAPKVSIFK---NFGTAM 81 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVID 137 I + R + V + + D RRDFTINA L D G++ID Sbjct: 82 IKADGLDIEFVGARRESYEANSRKPYVESGTLQDDQNRRDFTINAMAFSLNRDTFGELID 141 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GL DL+ + I+ D +D LR++R RF K I+ L A K+ L Sbjct: 142 PFDGLGDLKRKLIRTPLDPDITYSDDPLRMMRAIRFATQLNFK-IEKQSLKAITDNKERL 200 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 KI+S+ERI E+NK+L + P + +Y G+ I ++ Sbjct: 201 KIISNERIVEELNKILASPKPSIGLKLLYETGLLHYILPEL 241 >gi|224084064|ref|XP_002307206.1| predicted protein [Populus trichocarpa] gi|222856655|gb|EEE94202.1| predicted protein [Populus trichocarpa] Length = 458 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--KVIPTS 74 +L LL G ++ +VGG VRD L+N +D D+ TT ++ + F + + P Sbjct: 27 TVLKLLRVGGFEAYLVGGCVRDLLLNRVPKDFDVITTANLQQIKKKFHRAHIVGRRFPIC 86 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD-----------WKADSLRRDFT 123 I + +I ++++ + KV+ ++ WK +S++RDFT Sbjct: 87 IVHVKGSVI------EVSSFETSAQQCQEKEKVLLSQMRRSCDEKDFLLWK-NSMQRDFT 139 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 IN+L+ D ++ DY G+ D+R+ ++ + A ED RILR R G +I Sbjct: 140 INSLFFDPFMNRIYDYANGMEDVRSLKLQTLIPARLSFQEDCARILRGIRIAGRLG-LSI 198 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D A K + +K L+ +RI E+N +L + I+ + + K IFL Sbjct: 199 SKDTETAICKLQSSVKSLNKDRIKMELNYMLSYGAAESTILLLQRFHLLK-IFLPFHAAY 257 Query: 243 LDQLSQVIEAE 253 L + + + A+ Sbjct: 258 LHEQADEVSAQ 268 >gi|261331417|emb|CBH14411.1| tRNA nucleotidyltransferase, putative [Trypanosoma brucei gambiense DAL972] Length = 526 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 100/232 (43%), Gaps = 27/232 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSK----------------TRYKVIP 72 + GG VRDSL+ L QDIDIA R + +F++ + +V P Sbjct: 39 VAGGWVRDSLLGLHSQDIDIAIESATTRHVSGELFAREVASHQEALGMTARTVSVIRVNP 98 Query: 73 TSISYGTIKIIC-RKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYA 129 + +C + LR D T D R VV D+LRRD+T+NAL+ Sbjct: 99 ELSKHIETATVCVYDTPIEFCALRHDEYTRSDSRIP-VVRPATTVEDALRRDYTVNALFY 157 Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + K V DY GL DL R ++ D + +D LR+LR RF GE D + Sbjct: 158 NLHTKEVEDYTTGLEDLDRRILRCPLDPKETLTDDPLRLLRGVRFVGQLGELGFVLDESI 217 Query: 189 ASIKAKKGLK----ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 K+ LK +S ER+ E+ K+L I ++ + +E+ L Sbjct: 218 FRCVDKELLKKVTLKVSRERVGKELVKMLSGPFAEKCIETLHELNLLREVIL 269 >gi|1168821|sp|P45749|CCA_AERHY RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT Length = 192 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 42/211 (19%) Query: 28 KSCIVGGAVRDSLMNLSVQDID---IATTILP------DRVMRIF-------SKTRYKVI 71 ++ +VGGAVRD L+ L D D + T+ +V R F ++ Y + Sbjct: 2 QTYLVGGAVRDRLLGLPQGDRDHLVVGATVEQMLALGFTQVGRDFPVFLHPKTQQEYALA 61 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T G + Y S +T + D LRRD T+NA+ D+ Sbjct: 62 RTERKQG-------RGYTGFVCHASPEVT------------LEQDLLRRDLTVNAIAEDE 102 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGL 187 +G++ D GG+ DL R ++ + A ED LRILR RF A + + ++ L Sbjct: 103 EGRLHDPYGGIQDLERRVLRHVSPA---FAEDPLRILRVARFAARFHAQGFVVAPETLAL 159 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + + L L+ ER+W E+ ++L + P Sbjct: 160 MREMTDAGELAHLTPERVWKELERVLLGETP 190 >gi|261200423|ref|XP_002626612.1| poly(A) polymerase [Ajellomyces dermatitidis SLH14081] gi|239593684|gb|EEQ76265.1| poly(A) polymerase [Ajellomyces dermatitidis SLH14081] Length = 640 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVG-GLNDLRN 147 D+ LR + TD + + D+LRRD T+NAL+ + +I D+ G GL DL N Sbjct: 238 DLVNLRKETYTDDSRNPQIEIGTPEEDALRRDATVNALFYNIHTDMIEDFTGKGLQDLEN 297 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA----SIKAKKGLKILSSE 203 + I+ +D LR+LR RF + G +IDSD A IKA KI + E Sbjct: 298 KIIRTPMAPFQTFKDDPLRVLRLIRFASRLG-YSIDSDTEEAMKIEDIKAALKAKI-TQE 355 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 RI E+ K L +PL A+ + G++ IF + Sbjct: 356 RIGVEMEKTLRGPDPLTALQRINRLGLYDTIFAN 389 >gi|171317271|ref|ZP_02906468.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia ambifaria MEX-5] gi|171097532|gb|EDT42369.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia ambifaria MEX-5] Length = 413 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 39/271 (14%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGFRPVGKDFPVFLHPDT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y + F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFYFAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + +GDA +ED +RILR RF A + + + D L+ + Sbjct: 118 GQADLRARVFRHVGDA---FVEDPVRILRIARFAARFADFTVADDTLALMRRMVDAGEAD 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L ER+W EI + L NP + G I +V + + Q + + Sbjct: 175 ALVPERVWQEIARGLMEANPSRMFAVLRECGALARILPEVDALWGVPQRAD-------YH 227 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++D+ + ++++ + K+ +SLP Sbjct: 228 PEVDTGVHVMMVVDYAAKQG-------YSLP 251 >gi|327352427|gb|EGE81284.1| Poly(A) polymerase [Ajellomyces dermatitidis ATCC 18188] Length = 640 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVG-GLNDLRN 147 D+ LR + TD + + D+LRRD T+NAL+ + +I D+ G GL DL N Sbjct: 238 DLVNLRKETYTDDSRNPQIEIGTPEEDALRRDATVNALFYNIHTDMIEDFTGKGLQDLEN 297 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA----SIKAKKGLKILSSE 203 + I+ +D LR+LR RF + G +IDSD A IKA KI + E Sbjct: 298 KIIRTPMAPFQTFKDDPLRVLRLIRFASRLG-YSIDSDTEEAMKIEDIKAALKAKI-TQE 355 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 RI E+ K L +PL A+ + G++ IF + Sbjct: 356 RIGVEMEKTLRGPDPLTALQRINRLGLYDTIFAN 389 >gi|309780276|ref|ZP_07675027.1| multifunctional CCA protein [Ralstonia sp. 5_7_47FAA] gi|308920979|gb|EFP66625.1| multifunctional CCA protein [Ralstonia sp. 5_7_47FAA] Length = 428 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P+ + + K P + T + + Sbjct: 24 VGGAIRDALLGLPVQDRDYVVVGATPEAMEARGFRAVGKDFPVFLHPAT--------HAE 75 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ G VID G Sbjct: 76 YALARTERKTAAGYKGFSVYYAPDVTLEDDLIRRDLTINAMAQRVAEDGALVGPVIDPYG 135 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL +R + + DA +ED +RILR RF A + + ++ +++ L+ + + Sbjct: 136 GQADLASRAFRHVSDA---FMEDPVRILRLARFAARFADFHVAPETNALMQRMVQAGEVD 192 Query: 199 ILSSERIWSEINKLLEAKNP 218 L ER+W EI + L +P Sbjct: 193 ALVPERVWQEIARGLMEAHP 212 >gi|329961598|ref|ZP_08299657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacteroides fluxus YIT 12057] gi|328531590|gb|EGF58424.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacteroides fluxus YIT 12057] Length = 476 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 7/237 (2%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++F D I +K + +VGG VRD + +DID+ + ++ Sbjct: 11 QYFSDDIFKRISGTADKLGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGRSL 70 Query: 68 YKVIPTSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + S+ ++GT ++ + R + T +V + D RRDFTIN Sbjct: 71 GRGAHVSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTIN 130 Query: 126 A----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 A L + + G+++D GG+ DL+ +TI+ D +D LR++R RF Sbjct: 131 AMAVCLNSARYGELVDPFGGMEDLKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FY 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ID + + + + I+S ERI E+NK+L + P + + G+ + IF ++ Sbjct: 190 IDDVTFESLQRNRDRISIISKERIADELNKILLSPVPSKGFIDLDRSGLLELIFPEL 246 >gi|290474853|ref|YP_003467733.1| tRNA nucleotidyl transferase [Xenorhabdus bovienii SS-2004] gi|289174166|emb|CBJ80953.1| tRNA nucleotidyl transferase [Xenorhabdus bovienii SS-2004] Length = 393 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 12/213 (5%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVR+ L+ L V + D + P+ ++ + K P + T + + Sbjct: 5 LVGGAVRNQLLGLPVTERDWVIVGGNPEELLSQGYQQVGKDFPVFLHPKTHEEYALAR-- 62 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D LRRD TINA+ +G++ID G +DL++R Sbjct: 63 --TERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQTAEGELIDPYHGADDLKHRI 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERI 205 ++ + A ED LR+LR RF A++ + ++ L+ + L L+ ER+ Sbjct: 121 LRHVSGA---FSEDPLRVLRLARFAAYFAHLSFSIAPETQSLITKMVKSGELSSLTPERV 177 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 W E K L + +P +++ G +F ++ Sbjct: 178 WRETEKALTSPSPQIYFQVLHDCGALAILFPEI 210 >gi|154276116|ref|XP_001538903.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150413976|gb|EDN09341.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 543 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 107/248 (43%), Gaps = 45/248 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSK--------TRYKVI----PTSISYG 78 GG VRD L+ + DID+A + +R + +YK P+ I + Sbjct: 58 AGGWVRDKLLGVDSHDIDVAINCMTGERFGEGLKEYLDMPGNLEKYKACHSGNPSIIDFI 117 Query: 79 TIKIICRK------------KYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 I I + K F D+ LR + +D V + D+LRRD Sbjct: 118 KIHKIEKNPEKSKHLETATTKIFGLDIDLVNLRKETYSDDSRNPQVEIGTPEEDALRRDA 177 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 T+NAL+ + I D+ G GL D+ N+ I+ +D LR+LR RF + G Sbjct: 178 TVNALFYNIHTDTIEDFTGRGLQDMENKIIRTPLAPCQTFKDDPLRVLRLIRFASRLG-Y 236 Query: 181 NIDSDGLVA--------SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 IDSD A ++KAK ++ ERI EI K L NPL A+ + G++ Sbjct: 237 TIDSDTEEAMKIEDIKVALKAK-----ITQERIGVEIEKTLRGPNPLTALQRINRLGLYD 291 Query: 233 EIFLDVQE 240 IF + Q+ Sbjct: 292 TIFANHQD 299 >gi|253700551|ref|YP_003021740.1| hypothetical protein GM21_1929 [Geobacter sp. M21] gi|251775401|gb|ACT17982.1| CBS domain containing protein [Geobacter sp. M21] Length = 875 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 13/235 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKKY- 88 VGG VRD L++ +Q++DI T+ D ++ F+ + + +GT I+ + Sbjct: 480 VGGFVRDLLLD--IQNMDIDVTVDGDGILFAETFAAQFGCRVKSHQKFGTAVIVFPDGFK 537 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGKVIDYVGGLND 144 D+ + R + V K D RRDFT+N AL D GK+IDY G D Sbjct: 538 IDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTVNTLAIALNGDSFGKLIDYFGAYRD 597 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSE 203 L++R I+ + + +ED R+ R RF K ++ L+ + + L+ L Sbjct: 598 LQSRVIRVLHNLS--FVEDPTRVFRAIRFEQRLNFKIAKHTEDLIKNAVKMEFLEKLGGR 655 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 R+ +E+ ++L K PL I M + G+ + I V E++ + E V W Sbjct: 656 RLLAELVQILREKEPLKGIGRMASLGLLRFIH-PVIELTPAMQGALEETRYVVSW 709 >gi|322417672|ref|YP_004196895.1| poly(A) polymerase [Geobacter sp. M18] gi|320124059|gb|ADW11619.1| poly(A) polymerase [Geobacter sp. M18] Length = 471 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 45/246 (18%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--------------KVIPTSIS 76 +VGG VRD L+ +D D+ T P ++ ++F R ++I + Sbjct: 42 LVGGGVRDLLLGREPKDFDVVTDATPAQLKKLFRNCRLIGRRFRLAHLHFHDEIIEVATF 101 Query: 77 YGTIKIIC--------------------------RKKYFDITTLRSDLITDGRYAKVVFT 110 T+ R+ + L+S+ DG + Sbjct: 102 RSTVDAAEAAAEEAPEAVPEPSEAELLEHEREGRRRGHHGPKMLKSE---DGMVLRDNVF 158 Query: 111 RDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D++RRDFT+NAL Y+ +ID+VGG+ DL+N I+ IGD R ED +R++R Sbjct: 159 GTPEEDAIRRDFTVNALFYSIADFSIIDHVGGMEDLKNGLIRTIGDPMVRFTEDPVRMIR 218 Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF + G NI+ A + + + R++ E+ KLL + + G Sbjct: 219 AIRFASMLG-FNIEPRTEAAIEELCGTINKATPPRLYEEVLKLLLMGAGERTYQMLRHSG 277 Query: 230 IFKEIF 235 +F+ +F Sbjct: 278 LFEPLF 283 >gi|239607439|gb|EEQ84426.1| poly(A) polymerase [Ajellomyces dermatitidis ER-3] Length = 545 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 101/240 (42%), Gaps = 40/240 (16%) Query: 32 VGGAVRDSLMNLSVQDIDIA-TTILPDR-----------------------------VMR 61 GG VRD L+ + DID+A I +R +R Sbjct: 57 AGGWVRDKLLGVDSHDIDVAINCITGERFGEGLKEYLDTPGNLEKYKAFHSDPSIIDCIR 116 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 I + + T KI + D+ LR + TD + + D+LRRD Sbjct: 117 IHKIEKNPEKSKHLETATTKIFGLE--VDLVNLRKETYTDDSRNPQIEIGTPEEDALRRD 174 Query: 122 FTINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 T+NAL+ + +I D+ G GL DL N+ I+ +D LR+LR RF + G Sbjct: 175 ATVNALFYNIHTDMIEDFTGKGLQDLENKIIRTPMAPFQTFKDDPLRVLRLIRFASRLG- 233 Query: 180 KNIDSDGLVA----SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +IDSD A IKA KI + ERI E+ K L +PL A+ + G++ IF Sbjct: 234 YSIDSDTEEAMKIEDIKAALKAKI-TQERIGVEMEKTLRGPDPLTALQRINRLGLYDTIF 292 >gi|281422478|ref|ZP_06253477.1| polyA polymerase family protein [Prevotella copri DSM 18205] gi|281403461|gb|EFB34141.1| polyA polymerase family protein [Prevotella copri DSM 18205] Length = 480 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 12 DSDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 D D+ + +S G C +VGG VRD + DID+ V K + Sbjct: 14 DKDIFHKISEAADGLSVECYVVGGYVRDLFLERPSNDIDVVVVGSGIEVASALKKMLGRK 73 Query: 71 IPTSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA-- 126 S+ ++GT ++ + + R + +V + D RRDFTINA Sbjct: 74 AHLSVFRNFGTAQVKYQDTEVEFVGARKESYQHDSRKPIVEDGTLEDDQNRRDFTINAMA 133 Query: 127 --LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 L D+ G+++D G+ D+ + I D +D LR++R RF + I+ Sbjct: 134 ICLNKDRFGELVDPFDGVYDMEDGIIATPLDPDITFSDDPLRMMRCVRFATQLNFQ-IEE 192 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + + LKI+S+ERI E+NK++ +K+P + ++ + G+ I ++ I++D Sbjct: 193 ETYDALSRNAERLKIISAERICDEMNKIMLSKHPSSGFYYLKDTGLLDLILPEL--IAMD 250 Query: 245 QLS 247 ++ Sbjct: 251 KVE 253 >gi|167524258|ref|XP_001746465.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775227|gb|EDQ88852.1| predicted protein [Monosiga brevicollis MX1] Length = 322 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 19/223 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF----------SKTRYKVIPTSISYGTI 80 + GG VRD +++ DIDI ++ R S + V+P + + Sbjct: 14 VAGGWVRDKMLHRPSLDIDITLDVVTGRQFVAMIANLIEQEKRSDVGFHVLPEASQSAHL 73 Query: 81 KIICRKKY---FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI- 136 ++ + D LR + V + DS RRDFTINALY + I Sbjct: 74 QVATATLFGLEIDFNQLRKETYDPESRIPAVEIGTIQEDSDRRDFTINALYYNINTDAIE 133 Query: 137 DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK- 194 D+ G GL+DL ++ G+ R ++D LR+LR R+ Y + +++ L A+ ++ Sbjct: 134 DFDGRGLSDLEAGIVRSFGNPTQRFMDDPLRLLRLARYAGRYCFQ-VEATTLAAARQSTI 192 Query: 195 -KGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + L+ +S ER E+ KL +A N + ++H+ +F +F Sbjct: 193 HEALQTKVSRERFGMELLKLFKADNAMACLLHLAELQLFGVLF 235 >gi|121999109|ref|YP_001003896.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1] gi|166233858|sp|A1WZI2|CCA_HALHL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|121590514|gb|ABM63094.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1] Length = 415 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 16/214 (7%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V ++D + P+ + + K P + T + + Sbjct: 6 VGGAVRDRLLGRPVDEVDWVVVGATPEAMEAAGYRPVGKDFPVFLHPQTGE----EHALA 61 Query: 91 ITTLRSDLITDGR--YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 T ++ + G YA T + D RRD TINA+ D G++ID GG DL+ R Sbjct: 62 RTERKTAVGYHGFEFYAAPEVT--LEQDLARRDLTINAMAEDAGGRLIDPFGGQVDLQAR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSER 204 ++ + DA ED +RILR RF A + + ++ L + A + L ER Sbjct: 120 QLRHVTDA---FAEDPVRILRLARFAARFADDGFVVADETMALCQRMVAAGEVDALVPER 176 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +W E+ + L P I + G + +V Sbjct: 177 VWQELARGLMEPTPRRMIEVLRQAGALARLLPEV 210 >gi|261493599|ref|ZP_05990119.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495437|ref|ZP_05991885.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308942|gb|EEY10197.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310781|gb|EEY11964.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 416 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDI------ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD L+ L V+D D A +L ++ + + P + + Sbjct: 5 LVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGADFPVFLHPETKEEYALARQE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK D + V +D +RRD TINA+ D+ + D GG+ D Sbjct: 65 RKNGNGYNGFICDFSPN-----VTLEQDL----IRRDLTINAIAQDENSTLFDPYGGVQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L NR ++ + A ED LR+LR RF A + ++ L+ + L+ L Sbjct: 116 LENRLLRHVSPA---FSEDPLRVLRVARFAARFHSFGFTIAPETLKLMREMVQSGELEHL 172 Query: 201 SSERIWSEINKLLEAKNP 218 ++ER+W E K E NP Sbjct: 173 TAERVWLETQKAFETDNP 190 >gi|148262375|ref|YP_001229081.1| poly(A) polymerase [Geobacter uraniireducens Rf4] gi|146395875|gb|ABQ24508.1| poly(A) polymerase [Geobacter uraniireducens Rf4] Length = 454 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 36/205 (17%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + +W + + +L L + +VGG VRD L+ +D DI T P ++ R+F Sbjct: 16 ISRRWL-SPNAVKVLYRLKDNGFTAYLVGGGVRDLLLGREPKDFDIVTDATPGQIKRMFR 74 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS----------------DLITDG---RYA 105 R + + + ++ T RS ++ G R Sbjct: 75 NCRL----IGRRFRLAHLHFHDEIIEVATFRSASQDEPCAEEQGPAPGEITEPGARMRPP 130 Query: 106 KVVFTRDW-----------KADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFI 153 +++ + D + D++RRDFT+NAL Y +IDYVGG+ DL ++ I Sbjct: 131 RLLKSEDGMVLRDNIFGTPEEDAIRRDFTVNALCYNIDDFSIIDYVGGMEDLNRGVVRTI 190 Query: 154 GDAHHRILEDYLRILRFFRFFAHYG 178 GD R ED +R++R RF A G Sbjct: 191 GDPLVRFTEDPVRMIRAVRFAAMLG 215 >gi|119482211|ref|XP_001261134.1| poly(A) polymerase [Neosartorya fischeri NRRL 181] gi|119409288|gb|EAW19237.1| poly(A) polymerase [Neosartorya fischeri NRRL 181] Length = 633 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 35/243 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL--------------------------PDRVMRIFSK 65 GG VRD L+ + DID+ + + P+ M+ Sbjct: 154 TGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKDYLDIPENLEKYKRNHPNGEMKEAIV 213 Query: 66 TRYKVIPTSISYGTIKIICRKKY---FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +K+ ++ + K + D+ LR + TD + + D+LRRD Sbjct: 214 SLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYTDDSRNPQMEYGTAEEDALRRDA 273 Query: 123 TINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-- 178 TINAL+ + + KV D G G +D+R++ I+ + + +D LR+LR RF + G Sbjct: 274 TINALFYNLNESKVEDLTGRGFSDMRDKIIRTPLEPYQTFKDDPLRVLRLIRFASRLGYQ 333 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + N + + I A LKI S ER+ +E+ K+L+ +P A+ + G++ I + Sbjct: 334 IDPNTERAMQNSDISAALKLKI-SRERVGTELEKMLKGPDPRGALRFIDRLGLYHTILAN 392 Query: 238 VQE 240 Q+ Sbjct: 393 HQD 395 >gi|307731311|ref|YP_003908535.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. CCGE1003] gi|307585846|gb|ADN59244.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. CCGE1003] Length = 417 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 24/220 (10%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGYRPVGKDFPVFLHPQT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F D + D RRD TINA+ + G VID G Sbjct: 58 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVIDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL+ + + + DA LED +RILR RF A + + + + L+ + A + Sbjct: 118 GQRDLQAKLFRHVSDA---FLEDPVRILRIARFAARFADFAVAPETLALMRKMVADGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E+++ L K P + G I ++ Sbjct: 175 ALVAERVWQEVSRGLMEKKPSRMFAVLRECGALARILPEI 214 >gi|253997358|ref|YP_003049422.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylotenera mobilis JLW8] gi|253984037|gb|ACT48895.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylotenera mobilis JLW8] Length = 402 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 123/272 (45%), Gaps = 39/272 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIP------TSISYGTI 80 ++ IVGGAVRD L+ +++D D + P++++ + K P T Y Sbjct: 2 QTYIVGGAVRDELLGYAIKDKDYVVVGSTPEQMVAAGFRPVGKDFPVFLHPVTQAEYALA 61 Query: 81 KIICR--KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 + + K Y S +T + D RRD TINA+ + G+++D Sbjct: 62 RTERKTAKGYKGFAVHASPEVT------------LEQDLARRDLTINAIAKSESGELVDP 109 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL-VASIKAKKG- 196 G+ D++ +T++ + A +ED +RILR RF A + + ++ + L + I G Sbjct: 110 FNGIADIQAKTLRHVSAA---FVEDPVRILRIARFAARFTDFHVAPETLSLMQIMVDAGE 166 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 + L ER+W EI K L P + G + I + LD+L V + Q + Sbjct: 167 VDALVVERVWQEIAKGLMESQPSRMFNVLRACGALQRIMPE-----LDKLWGVPQPPQ-Y 220 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++D+ + ++++ + +++ F+LP Sbjct: 221 HPEVDTGVHVMLVVDYAAQQN-------FTLP 245 >gi|241664918|ref|YP_002983278.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia pickettii 12D] gi|240866945|gb|ACS64606.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ralstonia pickettii 12D] Length = 428 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGA+RD+L+ L VQD D + D +R F + K P + T + Sbjct: 24 VGGAIRDALLGLPVQDRDYVVVGATPEDMEVRGF-RAVGKDFPVFLHPAT--------HA 74 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYV 139 + R++ T Y V + D + D +RRD TINA+ G VID Sbjct: 75 EYALARTERKTAAGYKGFSVYYAPDVTLEDDLIRRDLTINAMAQRVAEDGALVGPVIDPY 134 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGL 197 GG DL +R + + DA +ED +RILR RF A + + ++ +++ L+ + + Sbjct: 135 GGQADLASRAFRHVSDA---FMEDPVRILRLARFAARFADFHVAPETNALMQRMVQDGEV 191 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ER+W EI + L +P Sbjct: 192 DALVPERVWQEIARGLMEAHP 212 >gi|78044937|ref|YP_360768.1| polyA polymerase family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997052|gb|ABB15951.1| polyA polymerase family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 864 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 15/215 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L+ +D+DI +L V + S ++ IP + T II + Sbjct: 478 LVGGIVRDLLLGHKQKDLDIVVEGDALVLAQEVGKTLSAIKF--IPHE-RFKTASIILKN 534 Query: 87 -KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD----QQGKVIDYVGG 141 + D +T R + V + D RRDFTIN++ + G++ D GG Sbjct: 535 GQKIDFSTSRVEFYQHPAALPEVEVSTIREDLYRRDFTINSMAIEITYGHIGELFDPFGG 594 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKIL 200 L DLR I+ + + +ED RILR RF + K +++ L+ A L ++ Sbjct: 595 LLDLREGIIRVLHNL--SFVEDPTRILRALRFLGRFNFKLEENTEKLLVDAIAGGFLNLV 652 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 SS RI E+ + K+ L + + + G+F+E+F Sbjct: 653 SSARILYELKLIFAEKDILKILKFLKHYGVFQEVF 687 >gi|56461352|ref|YP_156633.1| Poly(A) polymerase [Idiomarina loihiensis L2TR] gi|56180362|gb|AAV83084.1| Poly(A) polymerase [Idiomarina loihiensis L2TR] Length = 462 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/263 (23%), Positives = 114/263 (43%), Gaps = 38/263 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I +L L+ ++ +VGG +RD L+ L +D D+ T P+++ +F R Sbjct: 39 NAIKVLYRLHNSGFEAYLVGGCIRDILLGLEPKDFDVTTNATPEQIKSLFRNCRL----I 94 Query: 74 SISYGTIKIICRKKYFDITTLR----------------------SDLITDGRYAKVVFTR 111 + ++ K+ ++ T R L+ D Y + Sbjct: 95 GRRFRLAHVVFGKEVIEVATFRGHHGASPQEENKKNRTADQDEHGQLVRDNVYGSI---- 150 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFT NALY + + D+ G++D+ ++ IGD R ED +R+LR Sbjct: 151 --EEDAERRDFTANALYYNIADFAIYDFANGVDDINAGILRMIGDPEVRYREDPVRMLRA 208 Query: 171 FRFFAHYGEKNIDSDGLVAS-IKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNG 228 RF N+ D V+ +K L I + R++ E K+ + + M + Sbjct: 209 VRFATKL---NMQMDNSVSGPLKELAPLLINIPPARLFDEFLKMFMSGKAEANFLMMKDF 265 Query: 229 GIFKEIFLDVQEISLDQLSQVIE 251 G+F+++F +++ D+ S + Sbjct: 266 GLFQQLFPMLKDYVADEQSPAYQ 288 >gi|71274846|ref|ZP_00651134.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Dixon] gi|71901447|ref|ZP_00683536.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1] gi|170729907|ref|YP_001775340.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xylella fastidiosa M12] gi|226702095|sp|B0U6J4|CCA_XYLFM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|71164578|gb|EAO14292.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Dixon] gi|71728786|gb|EAO30928.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1] gi|167964700|gb|ACA11710.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Xylella fastidiosa M12] Length = 416 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 21/201 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ D D + P + + K + P + T + Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMKSLGFKPVGRDFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGG 141 + R++ Y + D + D RRDFTINA+ DQ +ID GG Sbjct: 57 ---EFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIARDQTNSTLIDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 +NDL R ++ I A ED LR+LR RF A ++ ++ + A L Sbjct: 114 VNDLEQRVLRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLAMMRQMVANGEL 170 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ERIW E+++ L P Sbjct: 171 NSLIPERIWKELSRSLAYTQP 191 >gi|167038519|ref|YP_001666097.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038738|ref|YP_001661723.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter sp. X514] gi|256751389|ref|ZP_05492268.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter ethanolicus CCSD1] gi|300913677|ref|ZP_07130994.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter sp. X561] gi|307723308|ref|YP_003903059.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter sp. X513] gi|320116915|ref|YP_004187074.1| metal dependent phosphohydrolase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852978|gb|ABY91387.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter sp. X514] gi|166857353|gb|ABY95761.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749771|gb|EEU62796.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter ethanolicus CCSD1] gi|300890362|gb|EFK85507.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter sp. X561] gi|307580369|gb|ADN53768.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacter sp. X513] gi|319930006|gb|ADV80691.1| metal dependent phosphohydrolase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 467 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 23/217 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKKYF 89 IVGG +RD ++N +D D +++ ++ + K +P GT +++ + Sbjct: 20 IVGGYIRDRILNREAKDYDFVVQEDAEKIAKLVAEKLGGTFVPFMAEKGTYRVVVGDEIL 79 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-----QQGKVIDYVGGLND 144 D T LR + D D RDFT+NA+ + +ID GG+ D Sbjct: 80 DFTNLRGE--------------DIYIDLAHRDFTMNAMAIKLTDYFEFEYIIDPFGGMTD 125 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 ++NR IK +G + ED LR LR RF Y + +ID + + +K ++ ER Sbjct: 126 IKNRKIKHVGMMTFK--EDPLRALRAVRFAVTY-KFDIDESTKAKIREEAELIKQVAPER 182 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I +EI +L+ KN + M + + + IF +V ++ Sbjct: 183 IMNEIFIILKEKNSHKYLRMMEDLKLMENIFEEVAKM 219 >gi|300854314|ref|YP_003779298.1| bifunctional tRNA-nucleotidyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434429|gb|ADK14196.1| bifunctional tRNA-nucleotidyltransferase [Clostridium ljungdahlii DSM 13528] Length = 388 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 24/228 (10%) Query: 15 LINILSLLNKGED-KSCIVGGAVRDSLMNLSVQDIDIATTILPD---------RVMRIFS 64 +IN++ + K K+ IVGGAVRD+ + V+DIDI P+ + + + Sbjct: 14 IINLIKAICKSNGIKAYIVGGAVRDAFLGNKVKDIDICIDKNPNFIIGKLNGIKCFQYYD 73 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K + + I CRK+Y+ DG ++ + D RRDFT Sbjct: 74 KFQTASLLFQNEVNIDLIRCRKEYY---------ARDGELP-IIDPSNIYNDLRRRDFTA 123 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NAL D G +ID GGL D++N++++ I +R ED RI R ++ YG D Sbjct: 124 NALAYDIVTGSLIDIYGGLEDIKNKSLQKIHLNSYR--EDPTRIFRAVKYAVRYGFDLKD 181 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 D ++ + + ++S++RI EI L E K + I+ N IF Sbjct: 182 KDEIINCVN-EGVFNLISNDRIVKEIYHLCEEKMWIKNILMCGNLKIF 228 >gi|254468852|ref|ZP_05082258.1| CCA-adding enzyme [beta proteobacterium KB13] gi|207087662|gb|EDZ64945.1| CCA-adding enzyme [beta proteobacterium KB13] Length = 365 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD ++N + D + P+ ++ K K P + T Sbjct: 2 KIYLVGGAVRDEILNQPYTEKDYVVVGSTPEEMIEKKFKPVGKSFPVFLHPDT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ Y +F T + D +RRD TINA+ D Q K ID G+ Sbjct: 55 -HEEYALARTEKKNGVGYKDFIFYTSPTISLEEDLVRRDLTINAIAKDDQNKYIDPFNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV--ASIKAKKGLKIL 200 ND+ + ++ + DA ED LRILR RF A + I + LV ++ + LK L Sbjct: 114 NDISKKILRHVSDAFK---EDPLRILRLARFKAKLPDFKIAEETLVLLKTMINEGELKYL 170 Query: 201 SSERIWSEINKLLEAK 216 S +RI EI K+ + K Sbjct: 171 SYDRIIIEIKKVFQLK 186 >gi|163785978|ref|ZP_02180426.1| putative polyA polymerase [Flavobacteriales bacterium ALC-1] gi|159877838|gb|EDP71894.1| putative polyA polymerase [Flavobacteriales bacterium ALC-1] Length = 474 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 15/225 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSC-IVGGAVRDSLMNL-SVQDIDIAT-----TILPD 57 + HK ++ NI+S C ++GG VRD L++ S +DIDI + Sbjct: 1 MNHKQALKHNIFNIISQSAGELQVDCYVIGGFVRDYLLDRGSAKDIDIVAIGSGIELAKQ 60 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 + + + + ++ T YGT + + R + ++ VV + D Sbjct: 61 VAINLPNNPKVQIFKT---YGTAMLRHDDIEIEFVGARKESYSEDSRNPVVENGTLQDDQ 117 Query: 118 LRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 RRDFTINAL + G+++D G+NDL I+ + +D LR++R RF Sbjct: 118 NRRDFTINALALCLNKENFGELLDPFNGINDLDKGIIRTPLNPDITYSDDPLRMMRAIRF 177 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 NI+S L A K ++I++ ERI E+NK+LE+K P Sbjct: 178 ATQLN-FNIESASLKAITDNKDRIQIITKERIVVELNKILESKTP 221 >gi|323527658|ref|YP_004229811.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. CCGE1001] gi|323384660|gb|ADX56751.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. CCGE1001] Length = 410 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 24/220 (10%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMIAQGYRPVGKDFPVFLHPET--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F D + D RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL+ + + + DA LED +RILR RF A + + + + L+ + A + Sbjct: 118 GQRDLQAKLFRHVSDA---FLEDPVRILRIARFAARFADFTVAPETLALMRKMVADGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L +ER+W E+++ L K P + G I ++ Sbjct: 175 ALVAERVWQEVSRGLMEKKPSRMFAVLRECGALARILPEI 214 >gi|77359578|ref|YP_339153.1| tRNA nucleotidyl transferase [Pseudoalteromonas haloplanktis TAC125] gi|76874489|emb|CAI85710.1| tRNA nucleotidyl transferase [Pseudoalteromonas haloplanktis TAC125] Length = 416 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 17/220 (7%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++K ++ +VGGAVRD L+ + D D + M +P + Sbjct: 1 MDKALEQVYLVGGAVRDLLLKRASNDNDYVVIGETPQTMEALG-----FVPIGSDFPVYL 55 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 K+ + + R++ + Y V + D RRD TIN++ D +ID Sbjct: 56 HPKTKEEYALG--RTERKSGKGYTGFVVDASPDVTLEEDLARRDLTINSMALDANDNIID 113 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---NIDSDGLVASIKAK 194 G DL+++ ++ DA +ED +R+LR RF A +G + + + L+ +K + Sbjct: 114 PFNGQQDLKDKILRHTTDA---FVEDPVRVLRIARFLARFGSEWRIHPSTYALMQQLKQQ 170 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L L ER+W E K L K+P + GIF E+ Sbjct: 171 GELNHLVPERVWLETEKALGEKHPELYFQALQGLGIFPEL 210 >gi|313207278|ref|YP_004046455.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Riemerella anatipestifer DSM 15868] gi|312446594|gb|ADQ82949.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Riemerella anatipestifer DSM 15868] Length = 476 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 8/213 (3%) Query: 29 SCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICR 85 + IVGG VRD LM V DID T + + ++ + S+ +YGT I + Sbjct: 30 AYIVGGYVRDLLMKRQVPTDIDFVTEQSGIELAQAVARELDSNLKVSVFKTYGTAMIKWK 89 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGG 141 + R + ++ V + D RRDFTINA L + G+++D GG Sbjct: 90 GLELEFVGARKESYSEDSRKPAVEQGSLEDDQKRRDFTINAMAISLGKEDFGRLVDPFGG 149 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + DL ++ +K + +D LR++R RF + K ++ + L A + +KI+S Sbjct: 150 VQDLESKILKTPLEPLQTYSDDPLRMMRAIRFASTLNFK-VEQNSLDAIKQEADRIKIVS 208 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 ERI E NK++ ++ P + + + G+ ++I Sbjct: 209 MERIMVEFNKIMLSEKPSIGLKLLDDTGLLEKI 241 >gi|312963427|ref|ZP_07777909.1| Multifunctional CCA protein [Pseudomonas fluorescens WH6] gi|311282233|gb|EFQ60832.1| Multifunctional CCA protein [Pseudomonas fluorescens WH6] Length = 409 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 83/198 (41%), Gaps = 24/198 (12%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGAVRD L+ ++V DID + + + + F P + + K Sbjct: 6 VGGAVRDRLLGITVTDIDRVVVGATTEEMLAKGFK-------PVGADF---PVFLDPKNG 55 Query: 90 DITTLRSDLITDGR-YAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 D L GR Y VF + D +RRD TINA+ D G + D G D Sbjct: 56 DEYALARTERKSGRGYGGFVFHASPEVTLEEDLIRRDLTINAMAQDDDGNLTDPYHGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L R ++ + A ED LR+LR RF A Y ++ L+ + L+ L Sbjct: 116 LEARILRHVSPA---FAEDPLRVLRVARFCARYAHLGFTVAPETLELMRQLSESGELEAL 172 Query: 201 SSERIWSEINKLLEAKNP 218 + ER W EI++ L P Sbjct: 173 TPERSWKEISRALMENQP 190 >gi|170696055|ref|ZP_02887192.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia graminis C4D1M] gi|170139047|gb|EDT07238.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia graminis C4D1M] Length = 410 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMIAQGYRPVGKDFPVFLHPQT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F D + D RRD TINA+ + G VID G Sbjct: 58 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVIDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL + + + DA LED +RILR RF A + + ++ + L+ + A + Sbjct: 118 GQRDLEAKLFRHVSDA---FLEDPVRILRIARFAARFADFSVAPETLALMRKMVADGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNP 218 L +ER+W E+++ L K P Sbjct: 175 ALVAERVWQEVSRGLMEKKP 194 >gi|228472020|ref|ZP_04056788.1| polyA polymerase family protein [Capnocytophaga gingivalis ATCC 33624] gi|228276632|gb|EEK15345.1| polyA polymerase family protein [Capnocytophaga gingivalis ATCC 33624] Length = 476 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 13/234 (5%) Query: 15 LINILSLLNKGEDKSC-IVGGAVRDSLMNLS-VQDIDIAT----TILPDRVMRIFSKTRY 68 + +++S + ++ C +VGG VRD L++ +DIDI T L ++V Sbjct: 11 IFHLISQIAHENNQECFVVGGFVRDLLLSRGQAKDIDIVTLGSGISLAEKVAAELPNN-- 68 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 I ++GT I + R + + +V D RRDFTINAL Sbjct: 69 PKISVFKNFGTAMIKTENIDIEFVGARKESYREDSRKPIVEDGSLSDDQNRRDFTINALA 128 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 D G++ID G++DL+N I+ + + +D LR+LR RF I+ Sbjct: 129 LSLSKDSFGELIDPFHGVDDLQNGLIRTPLEPNVTYSDDPLRMLRAIRFATQLNFV-IEE 187 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L A K+ LKI+S+ERI E+NK+L + P ++ G+ I ++ Sbjct: 188 KSLQAIADNKERLKIISNERIAEELNKILASPTPSVGFKLLFQTGLLSLILPEL 241 >gi|187930728|ref|YP_001901215.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia pickettii 12J] gi|187727618|gb|ACD28783.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ralstonia pickettii 12J] Length = 428 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P+ + + K P + T + Sbjct: 24 VGGAIRDALLGLPVQDRDYVVVGATPEDMEARGFRAVGKDFPVFLHPAT--------QAE 75 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ G V+D G Sbjct: 76 YALARTERKTAAGYKGFSVYYAPDVTLEDDLIRRDLTINAMAQRVAEDGALVGPVVDPYG 135 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL +RT + + DA +ED +RILR RF A + + ++ +++ L+ + + Sbjct: 136 GQADLASRTFRHVSDA---FMEDPVRILRLARFAARFADFHVAPETNALMQRMVQAGEVD 192 Query: 199 ILSSERIWSEINKLLEAKNP 218 L ER+W EI + L +P Sbjct: 193 ALVPERVWQEIARGLMEAHP 212 >gi|228471468|ref|ZP_04056253.1| polyA polymerase family protein [Porphyromonas uenonis 60-3] gi|228306736|gb|EEK15881.1| polyA polymerase family protein [Porphyromonas uenonis 60-3] Length = 501 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 13/221 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI----ATTILPDRVMR-IFSKTRYKVIPTSISYGTIKI 82 ++ +VGG VRD + DIDI + L V R I K + V ++GT ++ Sbjct: 46 ETYVVGGWVRDLFLQRPSSDIDIVCVGSGIALAKAVAREIGPKCQVHVF---ANFGTAQL 102 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDY 138 + + R + +V + D RRDFTINA L G+++D Sbjct: 103 RYKGVEVEFVGARRESYQRDSRKPIVEDGTLEDDQERRDFTINAMAISLNERTYGELVDP 162 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL++ I+ D +D LR++R RF + G ID A +K ++ +K Sbjct: 163 FYGLEDLQDYMIRTPVDPQVTFDDDPLRMMRAVRFASQLG-FFIDDAVFDAIVKLRERIK 221 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I+S+ERI E+NK++ + P + M G+ + I +VQ Sbjct: 222 IVSAERIIVELNKIMLSPRPSVGLSLMEQTGLLELILPEVQ 262 >gi|77461363|ref|YP_350870.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas fluorescens Pf0-1] gi|123603061|sp|Q3K5S5|CCA_PSEPF RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|77385366|gb|ABA76879.1| 2 tRNA nucleotidyltransferase [Pseudomonas fluorescens Pf0-1] Length = 409 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 22/217 (10%) Query: 32 VGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 VGGAVRD L+ V DID + + + + F P + + K Sbjct: 6 VGGAVRDRLLGKPVTDIDWVVVGATTEEMLAKGFR-------PVGADFPVF--LHPKSGE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y F + D +RRD TINA+ D Q + D G DL Sbjct: 57 EYALARTERKSGRGYGGFTFHASPEVTLEEDLIRRDLTINAMAEDDQQNLTDPYHGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + A ED LR+LR RF A Y E ++ L+ + L+ L+ Sbjct: 117 EERILRHVSPA---FAEDPLRVLRVARFAARYAELGFKVAPETLELMRQLSESGELEALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ER W EI++ L P I + + G K + +V Sbjct: 174 AERSWKEISRALMEDQPQVFIQVLRDCGALKVLMPEV 210 >gi|254230374|ref|ZP_04923758.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Vibrio sp. Ex25] gi|262392388|ref|YP_003284242.1| tRNA nucleotidyltransferase [Vibrio sp. Ex25] gi|151937112|gb|EDN55986.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Vibrio sp. Ex25] gi|262335982|gb|ACY49777.1| tRNA nucleotidyltransferase [Vibrio sp. Ex25] Length = 406 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 48/211 (22%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMR-----------IF----SKTRYKVIPTS 74 +VGGAVRD L+ + D D + P+ ++ +F SK + + T Sbjct: 5 LVGGAVRDKLLGIDSYDNDWVVVGATPETMLSQGYTAVGKDFPVFLHPKSKEEHALARTE 64 Query: 75 ISYGT--IKIICRKKYFDIT-TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 G+ C +FD + TL DLI RRD TINA+ D Sbjct: 65 RKSGSGYTGFEC---FFDQSVTLEEDLI-------------------RRDLTINAMAMDD 102 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGL 187 GK+ D GG DL ++ ++ + DA +ED LR+LR RF A + N ++ L Sbjct: 103 AGKLHDPYGGQKDLNDKLLRHVSDA---FIEDPLRVLRVARFAAKLADLNFTVADETMQL 159 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + + L L+ ER+W E +K L P Sbjct: 160 MRHMAESGELSTLTPERVWQEWHKSLSTPRP 190 >gi|308271595|emb|CBX28203.1| hypothetical protein N47_G35270 [uncultured Desulfobacterium sp.] Length = 889 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 91/388 (23%), Positives = 169/388 (43%), Gaps = 51/388 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI----SYGTIKII 83 ++ +GG VRD L+ +D+DI T+ D + F+K ++ + +GT +I Sbjct: 496 RAYAIGGFVRDLLLYRKNEDVDI--TVEGDGIA--FAKKYAPLVGARLHIYEKFGTAVVI 551 Query: 84 CRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDY 138 + DI + R + V K D RRDFTIN L ++ G +ID+ Sbjct: 552 FPDGFKIDIASARMEYYKFPAALPTVEMSSIKLDLFRRDFTINTMAIQLNPERFGTLIDF 611 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL 197 D++ + IK + + +ED RI R RF +G + GL+ + Sbjct: 612 FAAQKDIKEKAIKVLHNLS--FVEDPTRIFRAIRFEQRFGFTIGKLTSGLIENAVKMDFF 669 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK----EIFLDVQEIS-LDQLSQVIE- 251 K LS R++SE+ ++LE +NP+ +I+ + + G+ K I L+ + IS L+ + QV+ Sbjct: 670 KRLSGRRVFSELRQILEEENPIFSIIRLNDYGLLKVIDPSIILNNELISYLNSVKQVVSW 729 Query: 252 ------AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 E +W + F+ L K+ ++ +F + + + S F + Sbjct: 730 YNLLFLEESYIKWAV----YFMALFGHCKKEVTENVCTRFEIAPKQK----SIFCEERIE 781 Query: 306 KTLSIPEIKKLFYLYGDKV--MIAKLKIFLALHYNNLTHQDTC------FILQVLSDIIH 357 + E++ + + D + M+ +I + L+ +T ++ FI Q+ Sbjct: 782 SERCLRELENGYNITNDMLYNMLFPFRIEIILYMMAITKRERAKKAISFFITQL------ 835 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 + ++G D+ G+ PG NIL Sbjct: 836 -RMAKLSVSGKDLKTLGLEPGPLYKNIL 862 >gi|257070277|ref|YP_003156532.1| tRNA adenylyltransferase [Brachybacterium faecium DSM 4810] gi|256561095|gb|ACU86942.1| tRNA adenylyltransferase [Brachybacterium faecium DSM 4810] Length = 471 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 5/219 (2%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--KVIPTSISYGTIKIICRKK 87 +VGG VRD+++ S D+D T+ P++ I + + + +GT+ + Sbjct: 24 ALVGGPVRDAVLGRSSADLDFTTSARPEQTETILREWTHDGAIWDMGRDFGTLGGVRDGV 83 Query: 88 YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDL 145 +ITT R++ R +V + D RRDFT+NA+ + +D GL DL Sbjct: 84 KVEITTYRTESYDPSSRKPQVEYGDTLVGDLSRRDFTVNAMAVRLPSLEFVDPFDGLGDL 143 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 ++ +D LR++R RF A G + D+ A++ + I+S+ER+ Sbjct: 144 ARTLLRTPVAPGQSFSDDPLRMMRAVRFVAQLGFRIEDATADAVEELAER-ITIVSAERV 202 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ KL+ +P + M G+ + ++ + L+ Sbjct: 203 REELVKLMLGAHPRGGLELMTELGLAAHVLPELPALQLE 241 >gi|320584040|gb|EFW98252.1| tRNA nucleotidyltransferase [Pichia angusta DL-1] Length = 508 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 25/225 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP--DRVMRIFSKTRYKVIPTSISYGTIKI------ 82 I GG VRD L+ DIDI L + V ++ + + S+ G KI Sbjct: 54 ITGGWVRDKLLGRESHDIDIGIDHLSGVEFVTQLQEYIKAQNGGQSVDSGIYKIEKNPEK 113 Query: 83 -----ICRKKYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 C K F D LRS+ + + + D+ RRD T+N+L+ + Sbjct: 114 SKHLETCTTKLFGFSIDFVNLRSEKYAEDSRIPEIEVGTAEEDAFRRDATLNSLFYNLTT 173 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA-- 189 GKV D+ G GL DL + ++ D L+D LR LR RF + Y + ID L A Sbjct: 174 GKVEDFTGRGLQDLHDGILRTPLDPRKTFLDDPLRCLRLIRFASTYNFR-IDELALAAMR 232 Query: 190 --SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 IK K KI S ERI E K++ KNP+ + + + G ++ Sbjct: 233 EDEIKQKLREKI-SRERINVEFKKIIMGKNPVYGLRLIDDVGFYQ 276 >gi|282877716|ref|ZP_06286531.1| HD domain protein [Prevotella buccalis ATCC 35310] gi|281300288|gb|EFA92642.1| HD domain protein [Prevotella buccalis ATCC 35310] Length = 478 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 7/211 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ +V + K S+ ++GT ++ R + Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIKVAEALKQRLGKQAHLSVFRNFGTAQVKYRGQE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + VV + D RRDFTINA L + G+++D GL D Sbjct: 94 VEFVGARKESYNHDSRKPVVEDGTLEDDQNRRDFTINAMAVCLNEARFGELVDPFDGLLD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR++R RF + I+ + A + ++ +KI+S ER Sbjct: 154 LEDGIIRTPLDPDITFSDDPLRMMRCVRFATQL-KFFIEDETFEALQRNRERIKIVSGER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I E+NK++ +P V ++ G+ + I Sbjct: 213 IADELNKIMMTDHPSRGFVELHRCGLLELIL 243 >gi|327395286|dbj|BAK12708.1| multifunctional Cca protein [Pantoea ananatis AJ13355] Length = 372 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D RRD TINA+ D QG++ D G D+ +R ++ + DA ED LR+LR RF A Sbjct: 54 DLQRRDLTINAIARDDQGELYDPYHGQKDIADRQLRHVSDA---FSEDPLRVLRVARFAA 110 Query: 176 HYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 + N ++ L+ + L L++ER+W E K L + NP + + G Sbjct: 111 RFAHLNFRIADETQALMRQMAESGELADLTAERVWKETEKALSSHNPQVYFQVLRDCGAL 170 Query: 232 KEIFLDV 238 + +F ++ Sbjct: 171 QGLFPEI 177 >gi|213646113|ref|ZP_03376166.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 383 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 7/129 (5%) Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 +AD RRD TINAL D G++ID G DL R ++ + A ED LR+LR RF Sbjct: 55 EADLQRRDLTINALARDDDGQIIDPYHGRRDLEARLLRHVSPA---FGEDPLRVLRVARF 111 Query: 174 FAHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 A Y + ++ L+ + A L+ L+ ER+W E L +NP + + G Sbjct: 112 AARYAHLSFRIADETLTLMREMTAAGELEHLTPERVWKETENALTTRNPQVYFQVLRDCG 171 Query: 230 IFKEIFLDV 238 + +F ++ Sbjct: 172 ALRVLFPEI 180 >gi|294341121|emb|CAZ89522.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase] [Thiomonas sp. 3As] Length = 443 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 18/240 (7%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTR 67 W L + S + +S +VGGAVRD+L+ D D +A P +++ Sbjct: 13 WPRAFTLTGMTSSVVHPPGRSYVVGGAVRDALLGRPHGDRDWVAVGATPQQMIDA----- 67 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFT 123 +P + + + + + R++ T Y V + D LRRD T Sbjct: 68 -GFLPVGRDFPVF--LHPQTHEEYALARTERKTAPGYRGFVVQAAPEVTLEEDLLRRDLT 124 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 INA+ G +ID GG DL+ R ++ + A ED +RILR RF A +G+ ++ Sbjct: 125 INAMARAADGTLIDPYGGQRDLQARVLRHVSAA---FAEDPVRILRLARFAARFGDFSVA 181 Query: 184 SDG--LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + L+ + + L ER+W E+ + L P + + G + +V + Sbjct: 182 PETMDLMRHMVHAGEVDALVPERVWQELARGLMEPQPQRLFAVLRDCGALARLLPEVDRL 241 >gi|222824008|ref|YP_002575582.1| tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase [Campylobacter lari RM2100] gi|222539230|gb|ACM64331.1| tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase [Campylobacter lari RM2100] Length = 644 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 17/210 (8%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 +D D + I ++L ++ +VGG VR+S ++LS D DI + D +IF K+ Sbjct: 10 NDQDFLRIKNILKPYTQRAYLVGGCVRNSFLDLSSDDYDIE---IYDIEPQIFDDLMQKL 66 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + G + + K FD+ R + + T R +V D + + RRDFTINAL Sbjct: 67 GANGV--GKSFFVYKYKKFDLALARYENKISTGHRGFEVKVCNDEQEGAKRRDFTINALM 124 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + K +D+ GL DL+ + I+ I D +ED LR+LR F + D Sbjct: 125 VNIFDFKFLDFFNGLQDLQAKIIRHIDDK--SFVEDSLRVLRGISFACRF-----DLTIA 177 Query: 188 VASIKAKKGLKI--LSSERIWSEINKLLEA 215 S+K + + I LS ERI +E+ K+ + Sbjct: 178 RESLKLMQTMDISDLSKERINNELYKIFKT 207 >gi|299068341|emb|CBJ39565.1| tRNA nucleotidyl transferase [Ralstonia solanacearum CMR15] Length = 429 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P+ + +T K P + + + Sbjct: 25 VGGAIRDTLLGLPVQDRDYVVVGATPEAMEARGFRTVGKDFPV--------FLHPRTQAE 76 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALY---ADQQ---GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ A+ G VID G Sbjct: 77 YALARTERKTAAGYKGFSVYYAPDVTLEDDLIRRDLTINAMAQRVAEDGALVGPVIDPYG 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL +RT + + A +ED +RILR RF A + E ++ +++ L+ + + Sbjct: 137 GQADLASRTFRHVSGA---FVEDPVRILRVARFAARFAEFHVAPETNALMQRMAEAGEVD 193 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + LLEA+ Sbjct: 194 ALVPERVWQELARGLLEAR 212 >gi|206890174|ref|YP_002248303.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742112|gb|ACI21169.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 414 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 33/216 (15%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 S +VGG+VRD L+ ++DID A + + FS +K Sbjct: 27 SYLVGGSVRDLLLKRDLKDIDFAIKGDSIDLAKEFS---------------------RKI 65 Query: 89 FDITTLRSDLITDGRYAKVVFTRDW--------KADSLRRDFTINALYADQQGK-VIDYV 139 L ++ + GR K T D+ + D RDFTINA+ D K +ID Sbjct: 66 GGTFVLLDEVFSIGRVVKDNVTIDFAQLSGESIETDLSERDFTINAMATDLSLKNLIDPF 125 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG+ DL+NR IK + + + + D LRILR +RF A +I+++ A K +K+ Sbjct: 126 GGMEDLKNRLIKMVKEENLKA--DPLRILRAYRFHATVN-FDIENNTREALKKNAFLMKV 182 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + ERI E+ K+L N + M IFK F Sbjct: 183 TAKERIKEELWKILSVDNSARTVEMMVEDEIFKAFF 218 >gi|332293599|ref|YP_004432208.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Krokinobacter diaphorus 4H-3-7-5] gi|332171685|gb|AEE20940.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Krokinobacter diaphorus 4H-3-7-5] Length = 471 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 33/242 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLM--NLSVQDIDIATT----ILPDRVMRIF-SKTRYK 69 NI + + E ++ ++GG VRD L+ N V+DID+ L +V +I +K + + Sbjct: 14 NISNAADALELETYVIGGFVRDYLLKRNKEVKDIDVVAVGSGIALARKVSQILPNKPKVQ 73 Query: 70 VIPTSISYGT---------IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 V T YGT I+ + +K T R+ ++ DG + D RR Sbjct: 74 VFKT---YGTAMLRSGNMDIEFVGARKESYATESRNPVVEDGT---------LEDDQNRR 121 Query: 121 DFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL + G VID G++DL + I+ D +D LR++R RF + Sbjct: 122 DFTINALAIKLNDNGYGDVIDPFNGISDLERKIIRTPLDPDITYSDDPLRMMRAIRFASQ 181 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ L + K + +KI+++ERI E+NK++ + P + + G+ I Sbjct: 182 L-DFMIERTSLESITKNAERIKIITNERIVDELNKIMLSPTPSKGFLLLEKTGLLPYILP 240 Query: 237 DV 238 ++ Sbjct: 241 EL 242 >gi|237751300|ref|ZP_04581780.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Helicobacter bilis ATCC 43879] gi|229372666|gb|EEO23057.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Helicobacter bilis ATCC 43879] Length = 566 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 6/119 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS--KTRYKVIP 72 +I+IL +L ++ IVGG VRDSL+ LS +D DI + P + +IF ++VIP Sbjct: 14 VIDILKILESHGFEAYIVGGCVRDSLLGLSPKDWDITSNAEPMQTRQIFDLYDKDFEVIP 73 Query: 73 TSISYGTIKIICRKK--YFDITTLR-SDLITDGRYAKVV-FTRDWKADSLRRDFTINAL 127 + YGT+ I +K+ +ITT R DGR + + F + + D RRDF+INAL Sbjct: 74 IGLKYGTLGIRDKKRGNLVEITTYRFEGEYKDGRRPECIQFAKTLQEDLSRRDFSINAL 132 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIK 192 ++ DY G+ L+ R I +G+A R LED LRI+R RF + + S A Sbjct: 242 QLFDYHNGIKHLQERKIACVGNAQERFLEDSLRIMRAIRFASILPFSFQLSSQTKEAVFL 301 Query: 193 AKKGLKILSSERIWSEINKLL 213 + L ++++ERI E KLL Sbjct: 302 LTQKLLLIANERIQIEFTKLL 322 >gi|323344432|ref|ZP_08084657.1| polyA polymerase family protein [Prevotella oralis ATCC 33269] gi|323094559|gb|EFZ37135.1| polyA polymerase family protein [Prevotella oralis ATCC 33269] Length = 476 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 101/240 (42%), Gaps = 16/240 (6%) Query: 8 KWFHDSDLINIL--------SLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDR 58 K F D+DL IL SL C +VGG VRD + DID+ + Sbjct: 2 KLFSDADLARILDKDIFHKISLAADSLGMECYVVGGYVRDIFLERPSNDIDVVVVGSGIQ 61 Query: 59 VMRIFSK--TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116 V K R I ++GT ++ + R + + V + D Sbjct: 62 VADALKKLLGRRAHISVFRNFGTAQVKFGSMEIEFVGARKESYSHDSRKPAVENGTLEDD 121 Query: 117 SLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRDFTINAL ++ G++ID GGL D+ + I+ D +D LR++R R Sbjct: 122 QNRRDFTINALAICLNKERFGELIDPFGGLEDMEDGIIRTPLDPDITFSDDPLRMMRCVR 181 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A I+ A + +KI+S+ERI E++K++ P +Y G+ + Sbjct: 182 FAAQLN-FFIEDATFEALRRNADRIKIVSAERIADELHKIMMTPVPSKGFFELYRSGLLE 240 >gi|270307779|ref|YP_003329837.1| polyA polymerase, tRNA nucleotidyltransferase [Dehalococcoides sp. VS] gi|270153671|gb|ACZ61509.1| polyA polymerase, tRNA nucleotidyltransferase [Dehalococcoides sp. VS] Length = 418 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/368 (22%), Positives = 149/368 (40%), Gaps = 27/368 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVM---RIFSKTRYKVIPTSISYGTIKIICRKK 87 + GG VRD L++ + +D D+ T + ++ +F KT YKV + + Sbjct: 38 LAGGMVRDFLLDKTPKDADLVLTA--NAILFGQNLFEKTPYKVT-LHHRFNNLSADINGF 94 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLN 143 DIT+ RS++ V D +AD RRDF INA L G + D GL Sbjct: 95 KLDITSARSEIYPVPGKLPEVLEGDIRADLFRRDFKINAMAISLSPQDFGHLADPYNGLT 154 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL+ + + + +D RI R R+ G +I D L ++ + ++ ++ Sbjct: 155 DLKQGKLSVLHPKSFQ--DDPSRIWRALRYSERLG-FSISGDTLPLLLRDAHLIPLIGAD 211 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKE--IFLDVQEISLDQLSQVIEAEQVFEWKID 261 R+W EI + + P N ++ G+ + F + D+ + EA +++ + Sbjct: 212 RLWYEIECVFKEAKPENILLKAEETGVLRNSLPFAKADKWLADKFT---EAREIYGENVS 268 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKTLSIPEIKKLFYL 319 + +L + D S+ + L + + L + + + ++ +L+ L Sbjct: 269 PEIYLCLLTAHMDSPQADSLITRLHLGKHLSACLKDCQYLAEHREELDMAALSPSRLYSL 328 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379 K L+ F N L ++ + LS + KP L G D++ G PG Sbjct: 329 LA-KCKKEALQAFYVSADNPLVRKNLLLFHERLSAV----KPY--LKGADLIALGFAPGP 381 Query: 380 KVGNILVH 387 + IL Sbjct: 382 NIKTILTE 389 >gi|332289921|ref|YP_004420773.1| phosphodiesterase/2'nucleotidase/phosphatase [Gallibacterium anatis UMN179] gi|330432817|gb|AEC17876.1| phosphodiesterase/2'nucleotidase/phosphatase [Gallibacterium anatis UMN179] Length = 392 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 22/196 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMR---IFSKTRYKVI--PTSISYGTIK 81 K+ +VGGAVRD L+ L+V+D D + P+ +++ I + V P + + Sbjct: 6 KTYLVGGAVRDRLLGLAVKDRDWLVVHATPEWLLKQGYIQVGKDFPVFLHPQTKEEYALA 65 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 RK T D D + +D K RRD TINA+ D G + D G Sbjct: 66 RTERKNGRGYTGFYCDFSPD-----ITLEQDLK----RRDLTINAIAQDIDGNLYDPYHG 116 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + DL+ R ++ I A ED LRILR RF A + N ++ L+ S+ + L Sbjct: 117 IQDLKQRKLRHISPAFS---EDPLRILRVARFAARFYAFNFTIAPETVALMKSMVKQGEL 173 Query: 198 KILSSERIWSEINKLL 213 L+ ERIW E K L Sbjct: 174 ADLTVERIWLETEKAL 189 >gi|218186506|gb|EEC68933.1| hypothetical protein OsI_37630 [Oryza sativa Indica Group] Length = 536 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 26/227 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICRKK- 87 + GG VRD L+ DIDIA L + + F + Y + G I C Sbjct: 51 VAGGWVRDKLLGKDSTDIDIA---LDNMTGQNFCEKVNEYSELLGEEQKGIGVIQCNPDQ 107 Query: 88 --------------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + D LRS+ + V K D+ RRD TIN+L+ + Sbjct: 108 SKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFRRDLTINSLFFNINT 167 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLV 188 V D G G+ DL+ I A L+D LR+LR RF A + +++ Sbjct: 168 NTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLTEDLKDAASD 227 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +K++ G KI S ERI E++ ++ K+P+NA+ ++ + G+F +F Sbjct: 228 EKVKSELGSKI-SKERIGHEVDLMMSDKHPVNAMCYIRDLGLFYVVF 273 >gi|167629951|ref|YP_001680450.1| tRNA nucleotidyltransferase/poly(a) polymerase [Heliobacterium modesticaldum Ice1] gi|167592691|gb|ABZ84439.1| tRNA nucleotidyltransferase/poly(a) polymerase [Heliobacterium modesticaldum Ice1] Length = 891 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 12/230 (5%) Query: 11 HDSDLINILSLLNKGED-KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY- 68 H DL + + L GE + +VGG VRD L L V ++DI + D + R+ Sbjct: 466 HILDLFDDVGRLADGEGVQVYVVGGFVRDLL--LGVNNLDIDLVVEGDGICFATELARFL 523 Query: 69 -KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T +GT I + D+ T R + V D + D RRDFTINAL Sbjct: 524 KGTLRTHEKFGTAVIRWGDQKIDVATARREFYQYPAALPQVEASDLRQDLYRRDFTINAL 583 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNI 182 ++ G+++D+ G+ DL ++ + + +ED RILR RF YG Sbjct: 584 AIRLNRERFGELVDFFQGVKDLEQGLVRVLYNLS--FVEDPTRILRAIRFEQRYGFTIEP 641 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + G A++ ++ LS ER+ E+ +L +NP A+ + G+++ Sbjct: 642 QTMGFAREAIARQMIRELSYERMVDELILILSEENPAPALRRLTELGLWE 691 >gi|15837963|ref|NP_298651.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xylella fastidiosa 9a5c] gi|73619906|sp|Q9PDL7|CCA_XYLFA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|9106365|gb|AAF84171.1|AE003968_2 tRNA adenylyltransferase [Xylella fastidiosa 9a5c] Length = 416 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 21/201 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ D D + P + + K + P + T + Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMESLGFKAVGRDFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQG-KVIDYVGG 141 + R++ Y + D + D RRDFTINA+ DQ +ID GG Sbjct: 57 ---EFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIAHDQTNDTLIDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 +NDL R ++ I A ED LR+LR RF A ++ ++ + A L Sbjct: 114 VNDLEQRILRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLTMMREMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ERIW E+++ L P Sbjct: 171 NSLIPERIWKELSRSLAYTQP 191 >gi|46116880|ref|XP_384458.1| hypothetical protein FG04282.1 [Gibberella zeae PH-1] Length = 575 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 32/241 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIA---TTILP------DRVMRIFSKTRYKVIPTSISYGTIKI 82 GG VRD L+N+ DID+A T +P D + + ++ + P I G + Sbjct: 77 AGGWVRDKLLNIQSHDIDVAINAMTGVPFAQAMCDYCEQPDAMAKHSIGPADI--GNLHN 134 Query: 83 ICRK------------KYF----DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 + R K F D LR + T D R ++ F + D+ RRD T+N Sbjct: 135 VARNPEKSKHLETAMVKMFGLDLDFVNLRKETYTEDSRNPQMEFGTA-EEDARRRDATVN 193 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNID 183 AL+ + +V D+ GGL D+ + I+ + ++D LR+LR RF + E + Sbjct: 194 ALFYNLHDDRVEDFTGGLADMDAKIIRTPLEPFQTFMDDPLRVLRLVRFASRLQFEIEPE 253 Query: 184 SDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + +A K + L+ +S ER+ E K+L+ +P ++ + +F IF D + + Sbjct: 254 TRKFMADPKVLEALRAKISRERVGVEYEKMLKGAHPHQSLELIDELQLFHAIFTDPEHKN 313 Query: 243 L 243 L Sbjct: 314 L 314 >gi|161621735|ref|NP_518206.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia solanacearum GMI1000] Length = 408 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P+ + +T K P + T + Sbjct: 4 VGGAIRDTLLGLPVQDRDYVVVGATPEAMEARGFRTVGKDFPVFLHPRT--------QAE 55 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ G VID G Sbjct: 56 YALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVGPVIDPYG 115 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL +RT + + +A +ED +RILR RF A + E ++ ++ L+ + + Sbjct: 116 GQADLASRTFRHVSEA---FVEDPVRILRVARFAARFAEFHVAPETRALMQRMAEAGEVD 172 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + LLEA+ Sbjct: 173 ALVPERVWQELARGLLEAR 191 >gi|119474857|ref|ZP_01615210.1| tRNA nucleotidyltransferase, putative [marine gamma proteobacterium HTCC2143] gi|119451060|gb|EAW32293.1| tRNA nucleotidyltransferase, putative [marine gamma proteobacterium HTCC2143] Length = 367 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 125/284 (44%), Gaps = 25/284 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ + D + ++++ + + K P + T ++ Sbjct: 2 KNYLVGGAVRDKLLGYPYVERDWVVVGATAEQLINLGYQPVGKDFPVFLHPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R S G YA T + D RRD TINA+ D G +ID GG Sbjct: 57 EYALARTERKSGPGYTGFDCYASPEVT--LEEDLQRRDLTINAIAEDDDGTLIDPYGGQQ 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVASIKAKKGLKI 199 DL ++ + A ED LRILR RF +AH G D L+ I A L Sbjct: 115 DLDKGILRHVSPAFE---EDPLRILRVARFSARYAHLGFTLADETLLLMKKISASDELLA 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-EQVFEW 258 L +ER+W E+++ L ++P V + K++ ++ E +IE +Q Sbjct: 172 LPAERVWKEMHRSLSERSPDIFFVTLQQCDALKKLMPELDE----SFHTIIEPLKQAAIS 227 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR--YFLISFFN 300 + ++ F +L + D + ++ PRE R L+S F+ Sbjct: 228 GLPDVICFAILFAHIDTVETENFCQRMKAPREFRDLAILVSRFS 271 >gi|115487576|ref|NP_001066275.1| Os12g0171200 [Oryza sativa Japonica Group] gi|113648782|dbj|BAF29294.1| Os12g0171200 [Oryza sativa Japonica Group] Length = 537 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 26/227 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICRKK- 87 + GG VRD L+ DIDIA L + + F + Y + G I C Sbjct: 52 VAGGWVRDKLLGKDSTDIDIA---LDNMTGQNFCEKVNEYSELLGEEQKGIGVIQCNPDQ 108 Query: 88 --------------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + D LRS+ + V K D+ RRD TIN+L+ + Sbjct: 109 SKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFRRDLTINSLFFNINT 168 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLV 188 V D G G+ DL+ I A L+D LR+LR RF A + +++ Sbjct: 169 NTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLTEDLKDAASD 228 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +K++ G KI S ERI E++ ++ K+P+NA+ ++ + G+F +F Sbjct: 229 EKVKSELGSKI-SKERIGHEVDLMMSDKHPVNAMCYIRDLGLFYVVF 274 >gi|319760209|ref|YP_004124147.1| multifunctional CCA protein [Candidatus Blochmannia vafer str. BVAF] gi|318038923|gb|ADV33473.1| multifunctional CCA protein [Candidatus Blochmannia vafer str. BVAF] Length = 399 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 19/199 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL + + D + T P +++I + K P + + + Sbjct: 2 KKYLVGGAVRDSLLNLPIIEKDWVITGSNPQEMLKIGYEQVGKDFPVFLHPTS-----HE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R + G + +T + D RRD TINA+ D G ++D G Sbjct: 57 EYALARTERKN--GKGYTGFICYTNPSVTIEEDLYRRDLTINAMAYDMHGNLLDPYNGQR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIK-AKKGLKI 199 D++ + ++ + DA + ED LRILR RF F H G +I S+ L I+ + L++ Sbjct: 115 DIKLKLLRHVSDAFY---EDPLRILRVARFAAKFKHMGF-SIASETLQLMIQMSSSELQL 170 Query: 200 LSSERIWSEINKLLEAKNP 218 LSSERIW+E K L NP Sbjct: 171 LSSERIWTETKKALITNNP 189 >gi|217969133|ref|YP_002354367.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Thauera sp. MZ1T] gi|217506460|gb|ACK53471.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thauera sp. MZ1T] Length = 408 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 16/235 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P+ ++ + + P + T + + Sbjct: 5 VVGGAVRDALLGLPVKDRDWVVVGSTPEEMLARGFRPVGRDFPVFLHPHTNE----EYAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + D LRRD TINA+ + G++ID GG DL R Sbjct: 61 ARTERKSGHGYTGFVCHASPEVTLEEDLLRRDLTINAIARAEDGRLIDPCGGRRDLAARV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWS 207 + + A ED LRILR RF A + + + + L+ ++ + L +ER+W Sbjct: 121 FRHVSPA---FAEDPLRILRVARFSARFTDFELAPETLELMRAMVVAGEVDHLVAERVWQ 177 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 E+ + L P I + G + + LD+L + + E+ + +ID+ Sbjct: 178 ELARGLMEARPSRMIRVLRACGALARLLPE-----LDRLFGIPQPEK-YHPEIDT 226 >gi|77553768|gb|ABA96564.1| tRNA-nucleotidyltransferase, putative, expressed [Oryza sativa Japonica Group] Length = 600 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 26/227 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICRKK- 87 + GG VRD L+ DIDIA L + + F + Y + G I C Sbjct: 115 VAGGWVRDKLLGKDSTDIDIA---LDNMTGQNFCEKVNEYSELLGEEQKGIGVIQCNPDQ 171 Query: 88 --------------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + D LRS+ + V K D+ RRD TIN+L+ + Sbjct: 172 SKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFRRDLTINSLFFNINT 231 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLV 188 V D G G+ DL+ I A L+D LR+LR RF A + +++ Sbjct: 232 NTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLTEDLKDAASD 291 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +K++ G KI S ERI E++ ++ K+P+NA+ ++ + G+F +F Sbjct: 292 EKVKSELGSKI-SKERIGHEVDLMMSDKHPVNAMCYIRDLGLFYVVF 337 >gi|56461066|ref|YP_156347.1| tRNA nucleotidyltransferase [Idiomarina loihiensis L2TR] gi|73619780|sp|Q5QY23|CCA_IDILO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|56180076|gb|AAV82798.1| tRNA nucleotidyltransferase [Idiomarina loihiensis L2TR] Length = 370 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 76/305 (24%), Positives = 129/305 (42%), Gaps = 37/305 (12%) Query: 31 IVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L V + D + D + + F + K P + T R++Y Sbjct: 5 LVGGAVRDKLLKLPVHERDWVVVGARAEDLLKQGFLQV-GKDFPVFLHPST-----REEY 58 Query: 89 FDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 T R G + VF + D RRD TINA+ + G+++D G+ D+ Sbjct: 59 ALARTERKS--GKGHTSFDVFASPDVTLEDDLARRDLTINAIAQSEDGEIVDPYNGVQDI 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + R ++ + +A ED LR+LR RF A + + ++ ++ + A + L L Sbjct: 117 KARKLRHVSEA---FTEDPLRVLRVARFAARFAHLDFTVAEETQQMLQEMSASQELSHLV 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------LDQLSQVIEAEQV 255 ER+W E K L + P +F + D+Q +S SQ+ ++ Sbjct: 174 PERVWREWEKSLLTQTPT----------VFLTLLRDIQALSQVLPGITADDSQLQRLQRT 223 Query: 256 FEWKIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 + LRF L I + +S+ ++ ++P R + N T +PE Sbjct: 224 SAYSDSVTLRFASLFIEQETPESLKQFCRQLAIPNHYRDSALLARNHEDFITTPELPEKA 283 Query: 315 KLFYL 319 +L L Sbjct: 284 QLAAL 288 >gi|330998967|ref|ZP_08322692.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Parasutterella excrementihominis YIT 11859] gi|329575709|gb|EGG57235.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Parasutterella excrementihominis YIT 11859] Length = 370 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 45/303 (14%) Query: 28 KSCIVGGAVRDSLMN-----LSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K IVGG VRD L+ + D D + T P+ ++R+ +P + Sbjct: 4 KKYIVGGWVRDKLLTELGHPIQSNDKDWVVTGATPEEMLRL------NFVPVGNDFPVF- 56 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + K + + R++ + Y F D + D LRRD T+NA+ D++G +ID Sbjct: 57 -LHPKTHEEYALARTERKSGHGYKGFTFFADPSVTLEQDLLRRDLTVNAMAMDEEGHLID 115 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKK 195 GG DL+ ++ + A ED LR+LR RF A I ++ ++ + Sbjct: 116 PYGGFEDLKKGVLRHVSAAFE---EDPLRVLRVSRFRAKLPWFRIAEETKAMLKRMVESG 172 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-----LDQLSQVI 250 + L ER+ +EI K L+ P + G ++ + ++ LD LS Sbjct: 173 EVDALVPERVTAEIRKALKEAKPSIFFDELETNGFMGRVYPEWKQTELSRSLLDGLSSGF 232 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-------FNCNF 303 E+ F + S+ D + ++ + +P+++ F + F F C Sbjct: 233 TEEEKFAASVASV----------DPNKLPALLEALRMPKKLTEFALLFSESLRDGFECAS 282 Query: 304 NQK 306 + K Sbjct: 283 DGK 285 >gi|73619835|sp|Q8Y395|CCA_RALSO RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|17427093|emb|CAD13613.1| probable multifunctional cca protein [includes: cca-adding enzyme (trna nucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trna cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase ; 2',3'-cyclic phosphodiesterase ; phosphatase ] [Ralstonia solanacearum GMI1000] Length = 429 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P+ + +T K P + + + Sbjct: 25 VGGAIRDTLLGLPVQDRDYVVVGATPEAMEARGFRTVGKDFPV--------FLHPRTQAE 76 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ G VID G Sbjct: 77 YALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVGPVIDPYG 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL +RT + + +A +ED +RILR RF A + E ++ ++ L+ + + Sbjct: 137 GQADLASRTFRHVSEA---FVEDPVRILRVARFAARFAEFHVAPETRALMQRMAEAGEVD 193 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + LLEA+ Sbjct: 194 ALVPERVWQELARGLLEAR 212 >gi|331231585|ref|XP_003328456.1| tRNA nucleotidyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307446|gb|EFP84037.1| tRNA nucleotidyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 566 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 74/127 (58%), Gaps = 10/127 (7%) Query: 116 DSLRRDFTINAL-YADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+LRRD TIN+L Y G + D+ G GL DL I+ A H +D LR+LR RF Sbjct: 173 DALRRDITINSLFYNVHTGAIEDHTGKGLEDLEVGLIRTPLPAEHTFKDDPLRLLRCIRF 232 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKI-----LSSERIWSEINKLLEAKNPLNAIVHMYNG 228 +G + +D+D + S + +++ +S ER+ +E++K+L+ ++PL+++ + Sbjct: 233 ATRFGFR-LDAD--IVSAATSEPIRVALKEKISRERVGTEVDKMLKGRDPLSSLKMIEEL 289 Query: 229 GIFKEIF 235 G++K +F Sbjct: 290 GLYKLVF 296 >gi|218437193|ref|YP_002375522.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7424] gi|218169921|gb|ACK68654.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7424] Length = 408 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 41/250 (16%) Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 D + +VGGAVRD+L+ +D+ +LP + K + + I+ ++ Sbjct: 19 DNAYLVGGAVRDALLKRHRDYLDL-DFVLPQLAIETARKI------AKVYHAGFVILDQQ 71 Query: 87 KYFDITTLRSDLITDGRYAKVVF---TRDW--------KADSLRRDFTINAL-YADQQGK 134 + + A+VVF T D+ + D RRD+T+NA+ Y +GK Sbjct: 72 R---------------QIARVVFKESTVDFALQEGETLETDLHRRDYTVNAIAYNPHRGK 116 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID +GGLNDL+ ++ + + + +D LR+LR +R A N D + S +K Sbjct: 117 LIDPLGGLNDLKQGILRMV--SQKNLEDDPLRLLRAYRQAAQL---NFTIDPITRSTLSK 171 Query: 195 KG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +++ER+ +E+ LL I+ + G+FK+ F + +D LS++ + Sbjct: 172 LAPLLSQVAAERVQTELGYLLTHSQGTYWIIEAWKDGLFKDWFKTLTPDKIDLLSRIDSS 231 Query: 253 EQVFEWKIDS 262 Q + K++ Sbjct: 232 VQTLQKKLNE 241 >gi|123967695|ref|YP_001008553.1| poly A polymerase family protein [Prochlorococcus marinus str. AS9601] gi|123197805|gb|ABM69446.1| Poly A polymerase family [Prochlorococcus marinus str. AS9601] Length = 405 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 54/320 (16%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV---MRIFSKTR 67 H+ DLI L L G S +VGG +RD ++ + +D+ + + + +I R Sbjct: 23 HNLDLI--LGFLPTG---SYLVGGYIRDIILGRKTEKLDVDIVVPLNAIEIGKKIADNIR 77 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K+I ++II Y DI S I + D RD +IN++ Sbjct: 78 SKLIILDKKREVVRIILNNIYIDIANQVSSSI--------------EGDLCSRDLSINSI 123 Query: 128 -YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + + + D + GL DL ++ + + +L D LRILR FRF + K IDS Sbjct: 124 AFLFDKKSLFDPLNGLKDLEISLLR--THSENNLLNDPLRILRCFRFVSELNFK-IDSRL 180 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF-------KEIFLDVQ 239 L K K+ L +++ ERI EI K++ N L+A++ + IF +LD++ Sbjct: 181 LDFIKKNKRNLHLVAKERITYEIQKIVNGANALDAVLLIKKLNIFDTENLFEDSFYLDLE 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 +I+ +L Q + + + + I +L + L Q K+ ++ K Sbjct: 241 KINYGELDQEEQDKYLPSFFIAQILDVVTLEKLQFSKADIAKNKLLRKWHLLLKNKNIAQ 300 Query: 284 -----KFSLPREIRYFLISF 298 +F L +E+ FL SF Sbjct: 301 LDEFDRFKLHQELEMFLPSF 320 >gi|320160822|ref|YP_004174046.1| putative tRNA nucleotidyltransferase [Anaerolinea thermophila UNI-1] gi|319994675|dbj|BAJ63446.1| putative tRNA nucleotidyltransferase [Anaerolinea thermophila UNI-1] Length = 509 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 30/218 (13%) Query: 13 SDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYK 69 SDL IL ++++ D + VGGAVRD L+ + D+D P R+ + Sbjct: 7 SDLKRILQVVSRASDDVPVYLVGGAVRDHLLGVESHDLDFCLNASPIPLARRVANALNAG 66 Query: 70 VIPTSISYGTIKIICRKK-----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 T++++ + Y D R D + + D +RDFTI Sbjct: 67 FFLLDEQRETVRVVVHEPDGSINYLDFARFREDSLVE--------------DLWKRDFTI 112 Query: 125 NALYADQQG-----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 NA+ Q ++ID GGL DLR++ +K D+ +D +R+LR R FA Sbjct: 113 NAMALPVQEDSILLQLIDPCGGLQDLRDKRLKACSDSAFE--DDPVRVLRLIR-FAQKLR 169 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 +ID L + + L+ +S+ER EI ++LE+ Sbjct: 170 FHIDPQTLQDARSSVPSLERVSAERKRDEIFQILESPG 207 >gi|304383950|ref|ZP_07366407.1| polyA polymerase [Prevotella marshii DSM 16973] gi|304335028|gb|EFM01301.1| polyA polymerase [Prevotella marshii DSM 16973] Length = 474 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 15/215 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD + DID+ + DR+ ++ + + + +GT ++ R Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIKVADRLKQLLGRKAH--LSVFKRFGTAQVKYRD 91 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGL 142 + R + + +V + D RRDFTINAL ++ G++ID G+ Sbjct: 92 IEIEFVGARRESYSHDSRKPIVEDGTLEDDQCRRDFTINALAVCLNRERFGQLIDPFDGI 151 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLVASIKAKKGLKIL 200 D+ + I+ D +D LR++R RF H+ I+ + A ++ LKI+ Sbjct: 152 ADMEDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLHFF---IEDETFEALVRNTDRLKIV 208 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S ERI E++K++ + P V ++ G+ I Sbjct: 209 SGERIVDELHKIMMTRTPSKGFVDLHRTGLLPLIM 243 >gi|33519542|ref|NP_878374.1| tRNA CCA-pyrophosphorylase [Candidatus Blochmannia floridanus] gi|73619763|sp|Q7U350|CCA_BLOFL RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|33517205|emb|CAD83587.1| tRNA nucleotidyltransferase [Candidatus Blochmannia floridanus] Length = 411 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 28/203 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL + + D + T ++ I + K P + K Sbjct: 2 KKYLVGGAVRDSLLNLPITEKDWVITGSSAQEMLSIGYEQVGKDFPV--------FLHPK 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ Y + + + D RRD TINA+ D G ++D G Sbjct: 54 SHEEYALARTERKLGSGYTGFICHTEPSITIEEDLYRRDLTINAMAYDMNGNLLDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK------- 195 D++ R ++ + +A + ED LR+LR RF A KNI G +I+ + Sbjct: 114 KDIQLRLLRHVSNAFY---EDPLRVLRVARFAAKL--KNI---GFTIAIETFEIMTHMIH 165 Query: 196 GLKILSSERIWSEINKLLEAKNP 218 LK LS ER+W E K L NP Sbjct: 166 ELKSLSPERVWMETKKALITDNP 188 >gi|317128612|ref|YP_004094894.1| polynucleotide adenylyltransferase region [Bacillus cellulosilyticus DSM 2522] gi|315473560|gb|ADU30163.1| Polynucleotide adenylyltransferase region [Bacillus cellulosilyticus DSM 2522] Length = 385 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 27/230 (11%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 ++S I+IL+ L ++ IVGGAVRD L+ DIDI T ++ IF Sbjct: 4 NESAAIHILNSLESYGFEAFIVGGAVRDKLLKRKPNDIDICTKASIKQIQSIF------- 56 Query: 71 IPTSI----SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 P+SI ++GT+ + + +++T R+ +G + +D RDFTINA Sbjct: 57 -PSSIHVGSNHGTLIVKIKGCTLEVSTYRA---RNGEKPTIY------SDLSLRDFTINA 106 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDS 184 + D +G +ID G ++ + I+ + + R +ED +R+LR R ++ +N S Sbjct: 107 MAIDIRGNIIDPYDGQLAIKRKVIEVV-QSGQRFIEDPIRLLRAIRIAKQLNFSIENKTS 165 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L S +K +++ERI +E K++ A + + +G + + I Sbjct: 166 ALLTDSAHL---IKEVAAERITAEFQKIVTAVLNKKEVCELVSGDVVQNI 212 >gi|227537511|ref|ZP_03967560.1| tRNA adenylyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227242648|gb|EEI92663.1| tRNA adenylyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 472 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 18/229 (7%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDI----ATTILPDRV-MRIFSK-TRYKV 70 I L + + ++GG VRD +M + D+DI + D++ R+ +K T YK Sbjct: 13 IKDLAQQTSTECYVIGGYVRDRIMGRPFKNDVDIVVIGSGIEFADKLGERLNTKVTVYK- 71 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA---- 126 S+GT ++ + R + +V + D RRDFTINA Sbjct: 72 -----SFGTAMLVYDGLNIEFVGARKESYRSDSRKPIVENGTLEDDQNRRDFTINAMAYS 126 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 L A G ++D G+ D+ R I+ +D LR++R RF + G K ID Sbjct: 127 LNAHNYGALLDPFNGIEDIEQRVIRTPLAPQETFSDDPLRMMRAIRFASQLGFK-IDIHT 185 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + A ++ + I+S ERI E+NK++ ++ P ++++ G+ + IF Sbjct: 186 IEAIYSTRERISIISKERITDELNKIILSEKPSVGFKYLFDTGLLELIF 234 >gi|303256272|ref|ZP_07342288.1| multifunctional CCA protein [Burkholderiales bacterium 1_1_47] gi|302861001|gb|EFL84076.1| multifunctional CCA protein [Burkholderiales bacterium 1_1_47] Length = 370 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 45/303 (14%) Query: 28 KSCIVGGAVRDSLMN-----LSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 K IVGG VRD L+ + D D + T P+ ++R+ +P + Sbjct: 4 KKYIVGGWVRDKLLTELGHPIQSNDKDWVVTGATPEEMLRL------NFVPVGNDFPVF- 56 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVID 137 + K + + R++ + Y F D + D LRRD T+NA+ D++G +ID Sbjct: 57 -LHPKTHEEYALARTERKSGHGYKGFTFFADPSVTLEQDLLRRDLTVNAMAMDEEGHLID 115 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKK 195 GG DL+ ++ + A ED LR+LR RF A I ++ ++ + Sbjct: 116 PYGGFEDLKKGVLRHVSAAFE---EDPLRVLRVSRFRAKLPWFRIAEETKAMLKRMVESG 172 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-----LDQLSQVI 250 + L ER+ +EI K L+ P + G ++ + ++ LD LS Sbjct: 173 EVDALVPERVTAEIRKALKEAKPSIFFDELETNGFMGRVYPEWKQTELSRSLLDGLSSGF 232 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-------FNCNF 303 E+ F + S+ D + ++ + +P+++ F + F F C Sbjct: 233 TEEEKFAASVASV----------DPNKLPALLEALRMPKKLTEFALLFSESLRDGFECAS 282 Query: 304 NQK 306 + K Sbjct: 283 DGK 285 >gi|15895332|ref|NP_348681.1| tRNA nucleotidyltransferase family protein [Clostridium acetobutylicum ATCC 824] gi|15025049|gb|AAK80021.1|AE007709_5 TRNA nucleotidyltransferase family enzyme [Clostridium acetobutylicum ATCC 824] gi|325509477|gb|ADZ21113.1| TRNA nucleotidyltransferase family enzyme [Clostridium acetobutylicum EA 2018] Length = 393 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 23/192 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----YKVIPTSISY----GT 79 K+ I+GGAVRDS++N+ +DID+ P +++ + Y+ TS Y + Sbjct: 28 KAYIIGGAVRDSILNVKSKDIDVCVEGDPLIIIKELKSLKDYVYYEKFQTSTIYFNNGVS 87 Query: 80 IKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 + +I CRK+ T L+ ++ +V K D RRDFT+NAL D ++ID Sbjct: 88 VDLIRCRKE----TYLKDGMLP------IVEPSSIKDDIYRRDFTVNALAYDIVDERIID 137 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 + GG++D+ N+ IK I + ED RI R ++ YG + I+ D + S+ Sbjct: 138 FYGGIDDINNKVIKSIHKNSYS--EDCTRIFRAIKYSIRYGFE-IEDDFVFNSLIGNNIF 194 Query: 198 KILSSERIWSEI 209 +S ER E+ Sbjct: 195 NTISFERYIKEL 206 >gi|303314721|ref|XP_003067369.1| tRNA nucleotidyltransferase, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107037|gb|EER25224.1| tRNA nucleotidyltransferase, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] Length = 625 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 6/156 (3%) Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLR 146 D+ LR + +D R+ ++ F + D+LRRD T+NAL+ + V D+ G G+ DLR Sbjct: 222 DLVNLRKETYSDHSRHPEMEFG-TAEEDALRRDATVNALFYNLHTSSVEDFTGRGIADLR 280 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI-LSSER 204 I+ + + +D LR+LR RF + G K + +++ + K LK+ +S ER Sbjct: 281 AHLIRTPLEPYQTFKDDPLRVLRLIRFSSRLGYKIDPNTEESMQHDDIKDALKLKISQER 340 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I +E+ K+L+ +PL A+ + G++ IF + Q+ Sbjct: 341 IGAEVEKMLKGPDPLMALHIIERLGLYDTIFANHQD 376 >gi|88811002|ref|ZP_01126258.1| tRNA nucleotidyl transferase [Nitrococcus mobilis Nb-231] gi|88791541|gb|EAR22652.1| tRNA nucleotidyl transferase [Nitrococcus mobilis Nb-231] Length = 410 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 90/214 (42%), Gaps = 48/214 (22%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-----------IATTILP-DRVMRIF----SKTRYKVI 71 ++ +VGGAVRD L+ L+V + D IA P R +F + Y + Sbjct: 2 ETYLVGGAVRDRLLGLTVTERDWVVVGAEPAELIARGFRPVGREFPVFIHPETGEEYALA 61 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T G + Y T S +T + D RRD TINAL D+ Sbjct: 62 RTERKVG-------RGYHGFTFYTSPAVT------------LEQDLQRRDLTINALAQDK 102 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYG----EKNIDS 184 G+VID GG DL R ++ + A ED +RILR RF A H G ++ ++ Sbjct: 103 HGRVIDPFGGRRDLEARILRHVSPA---FREDPVRILRLARFAARLEHLGFTIAQETLE- 158 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 L + A + L ER+W EI + L P Sbjct: 159 --LCREMVAAGEVDALVPERVWQEIARALMEPTP 190 >gi|325955576|ref|YP_004239236.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Weeksella virosa DSM 16922] gi|323438194|gb|ADX68658.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Weeksella virosa DSM 16922] Length = 473 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 12/220 (5%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMN-LSVQDIDIATT----ILPDRVMRI 62 K +D I I + + KS +VGG VRD L+ QDID T IL ++V + Sbjct: 5 KAINDPIFITIGETAKELKQKSYVVGGFVRDFLLERPGKQDIDFVTVGNGIILAEKVAKK 64 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 T + +GT + K + R + ++ V + D RRDF Sbjct: 65 LGNTSK--VSVFKRFGTAMFKYQNKELEFVGARKESYSEDSRKPFVENGTLEDDQKRRDF 122 Query: 123 TINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINAL + G++ID G+ DL ++ I+ D +D LR++R RF A Sbjct: 123 TINALAISLNHEDFGQLIDPFDGIQDLEDKIIRTPLDPVITYSDDPLRMMRAIRFAAQL- 181 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + +I+ A + L+I+S ER+ E NK++ + P Sbjct: 182 DFSIEEKSFRAIQENAHRLEIVSKERVMDEFNKIMLTQKP 221 >gi|242817425|ref|XP_002486952.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500] gi|218713417|gb|EED12841.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500] Length = 564 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 44/242 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL---------------PDRVMRIFSKTRYKVIPTSIS 76 GG VRD L+ ++ DID+A + + PD + + + Sbjct: 83 TGGWVRDKLLGVTSHDIDVAISTMTGLQFGTYLQEYLDDPDNLQKYMDNKELAFTSEMLK 142 Query: 77 YGTIKIICRK---------KYF----DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDF 122 TIK K K F D+ LR + T+ R +V F + D+LRRD Sbjct: 143 VHTIKANPEKSKHLETVATKLFGLDIDLVNLRKETYTEHSRNPQVEFG-TAEEDALRRDA 201 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-- 178 T+NAL+ + ++ D+ G GL+D+ + I+ + + +D LR+LR RF + G Sbjct: 202 TVNALFYNLNTSMLEDFTGLGLDDMERKLIRTPLEPYQTFKDDPLRVLRLIRFASRLGYH 261 Query: 179 -----EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 ++ + +D + + K K +S ER+ E+ K L A +P + ++ + G++ Sbjct: 262 IDEKTQEAMQNDDIKRAFKLK-----ISKERVGVEVEKTLRAADPRIGLRYIDDLGLYST 316 Query: 234 IF 235 IF Sbjct: 317 IF 318 >gi|325269379|ref|ZP_08135996.1| polyA polymerase family protein [Prevotella multiformis DSM 16608] gi|324988300|gb|EGC20266.1| polyA polymerase family protein [Prevotella multiformis DSM 16608] Length = 485 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 9/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ +V + S+ ++GT ++ + Sbjct: 45 VVGGYVRDLFLERPSNDIDVVVVGSGIQVASGLKGILGRKAHLSVFRNFGTAQVKYKDTE 104 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + + V + D RRDFTINAL ++ G+++D GG++D Sbjct: 105 VEFVGARKESYSHDSRKPAVEDGTLEDDQNRRDFTINALAVCLNRERFGELVDPFGGVDD 164 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR++R RF A I+ + A + + ++I+S ER Sbjct: 165 LWDGIIRTPLDPDVTFSDDPLRMMRCVRFAAQLNFL-IEEETFEALERNAERIRIISGER 223 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I E+NK++ P V +Y G+ + I ++ ++LD Sbjct: 224 IEEELNKIMMTPTPSKGFVELYRCGLLQLILPEL--VALD 261 >gi|119175111|ref|XP_001239837.1| hypothetical protein CIMG_09458 [Coccidioides immitis RS] Length = 625 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 6/156 (3%) Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLR 146 D+ LR + +D R+ ++ F + D+LRRD T+NAL+ + V D+ G G+ DLR Sbjct: 222 DLVNLRKETYSDHSRHPEMEFG-TAEEDALRRDATVNALFYNLHTSSVEDFTGRGIADLR 280 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI-LSSER 204 I+ + + +D LR+LR RF + G K + +++ + K LK+ +S ER Sbjct: 281 AHLIRTPLEPYQTFKDDPLRVLRLIRFSSRLGYKIDPNTEESMQHDDIKDALKLKISQER 340 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I +E+ K+L+ +PL A+ + G++ IF + Q+ Sbjct: 341 IGAEVEKMLKGPDPLMALHIIERLGLYDTIFANHQD 376 >gi|288799639|ref|ZP_06405098.1| polyA polymerase family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332887|gb|EFC71366.1| polyA polymerase family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 475 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 16/239 (6%) Query: 12 DSDLINILS-----LLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 +SDL IL+ L++K D C +VGG VRD + +DID+ V Sbjct: 6 NSDLAKILNQDIFHLISKAADALSLECYVVGGYVRDLFLERPSKDIDVVVVGSGIAVAEK 65 Query: 63 FSKTRYKVIPTSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 T + S+ ++GT ++ + + R + +V + D RR Sbjct: 66 LKATLGRGAHLSVFRNFGTAQVKYKGIEVEFVGARRESYQRNSRKPIVEDGTLEDDQNRR 125 Query: 121 DFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL + + G+++D G+ DL + I+ + + +D LR+LR RF Sbjct: 126 DFTINALAVCLNSARFGELVDPFYGIEDLEDGIIRTPLEPNITFSDDPLRMLRCIRFATQ 185 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I+ + A I+ + +KI+S ERI E+NK++ K P + +Y G+ + I Sbjct: 186 LN-FFIEDETFDALIENAERIKIISGERISDELNKIMLCKTPSKGFIDLYRCGLLQIIL 243 >gi|242817430|ref|XP_002486953.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500] gi|218713418|gb|EED12842.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500] Length = 617 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 44/244 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL---------------PDRVMRIFSKTRYKVIPTSIS 76 GG VRD L+ ++ DID+A + + PD + + + Sbjct: 136 TGGWVRDKLLGVTSHDIDVAISTMTGLQFGTYLQEYLDDPDNLQKYMDNKELAFTSEMLK 195 Query: 77 YGTIKIICRK---------KYF----DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDF 122 TIK K K F D+ LR + T+ R +V F + D+LRRD Sbjct: 196 VHTIKANPEKSKHLETVATKLFGLDIDLVNLRKETYTEHSRNPQVEFG-TAEEDALRRDA 254 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-- 178 T+NAL+ + ++ D+ G GL+D+ + I+ + + +D LR+LR RF + G Sbjct: 255 TVNALFYNLNTSMLEDFTGLGLDDMERKLIRTPLEPYQTFKDDPLRVLRLIRFASRLGYH 314 Query: 179 -----EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 ++ + +D + + K K +S ER+ E+ K L A +P + ++ + G++ Sbjct: 315 IDEKTQEAMQNDDIKRAFKLK-----ISKERVGVEVEKTLRAADPRIGLRYIDDLGLYST 369 Query: 234 IFLD 237 IF + Sbjct: 370 IFAN 373 >gi|242817434|ref|XP_002486954.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500] gi|218713419|gb|EED12843.1| tRNA nucleotidyltransferase [Talaromyces stipitatus ATCC 10500] Length = 635 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 44/244 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL---------------PDRVMRIFSKTRYKVIPTSIS 76 GG VRD L+ ++ DID+A + + PD + + + Sbjct: 136 TGGWVRDKLLGVTSHDIDVAISTMTGLQFGTYLQEYLDDPDNLQKYMDNKELAFTSEMLK 195 Query: 77 YGTIKIICRK---------KYF----DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDF 122 TIK K K F D+ LR + T+ R +V F + D+LRRD Sbjct: 196 VHTIKANPEKSKHLETVATKLFGLDIDLVNLRKETYTEHSRNPQVEFG-TAEEDALRRDA 254 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-- 178 T+NAL+ + ++ D+ G GL+D+ + I+ + + +D LR+LR RF + G Sbjct: 255 TVNALFYNLNTSMLEDFTGLGLDDMERKLIRTPLEPYQTFKDDPLRVLRLIRFASRLGYH 314 Query: 179 -----EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 ++ + +D + + K K +S ER+ E+ K L A +P + ++ + G++ Sbjct: 315 IDEKTQEAMQNDDIKRAFKLK-----ISKERVGVEVEKTLRAADPRIGLRYIDDLGLYST 369 Query: 234 IFLD 237 IF + Sbjct: 370 IFAN 373 >gi|145219609|ref|YP_001130318.1| metal dependent phosphohydrolase [Prosthecochloris vibrioformis DSM 265] gi|145205773|gb|ABP36816.1| metal dependent phosphohydrolase [Chlorobium phaeovibrioides DSM 265] Length = 470 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 33/233 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMR------------IFSKTRYKVI----PTS 74 +VGG VRD ++ DIDI P + +F + R + P Sbjct: 25 LVGGFVRDMILQRPCTDIDIMVIGDPVPFAKQIREELHGKNFVLFERFRTAQLEIPGPEG 84 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--DQQ 132 + Y + RK+ ++ + + + T + D RRDFT+NAL ++Q Sbjct: 85 VHYKLELVGARKESYNPESRKP----------ITLTGTLEDDLARRDFTLNALALCLNRQ 134 Query: 133 GK--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G+ +ID GL DL+ ++ D +D LR++R RF A G ++ ++ + Sbjct: 135 GRGDIIDQHNGLRDLKEEILRTPLDPEQTFSDDPLRMMRAARFAAQLG--FTPAEEVIEA 192 Query: 191 IKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 ++ K + I+S ERI +E K++ + P ++ ++ G+ +EI DV ++ Sbjct: 193 METMHKRITIVSRERISTEFLKIMSSPRPSVGLIILHQTGLLQEIMPDVATMA 245 >gi|167835097|ref|ZP_02461980.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia thailandensis MSMB43] Length = 327 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ L V+D D + P+++ K K P + T + + Sbjct: 6 VGGAIRDELLGLPVRDRDYVVVGATPEQMAAQGFKPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F + D +RRD TINA+ + G V+D G Sbjct: 58 YALARTERKTAAGYHGFQFHYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +G A +ED +RILR RF A + E ++ D+ L+ + Sbjct: 118 GQADLRAKLFRHVGGA---FVEDPVRILRVARFAARFAEFSVAPDTAALMRKMVDAGEAD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|288927029|ref|ZP_06420922.1| polyA polymerase family protein [Prevotella buccae D17] gi|288336203|gb|EFC74591.1| polyA polymerase family protein [Prevotella buccae D17] Length = 488 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 8/239 (3%) Query: 12 DSDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 D D+ + +S C +VGG VRD + DID+ +V K + Sbjct: 14 DKDIFHQISRAADSLHAECYVVGGYVRDLFLERPSGDIDVVVVGSGIQVADALKKQLGRK 73 Query: 71 IPTSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 S+ ++GT ++ + + R + + VV + D RRDFTINAL Sbjct: 74 AHISVFRNFGTAQVKYKGLEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINALA 133 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 D+ G+++D G+ DL I D +D LR++R RF +I+ Sbjct: 134 VCLNGDRFGQLVDPFDGIRDLEEGIIATPLDPDITFSDDPLRMMRCVRFATQLN-FDIEP 192 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 A + + LKI+S ERI E+NK++ A +P +++ G+ I ++ ++ + Sbjct: 193 ATYDALSRNARRLKIISGERIADEMNKIMLAPHPSKGFYYLHETGLLYLILPELCQLDI 251 >gi|261749258|ref|YP_003256943.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497350|gb|ACX83800.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 472 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 15/229 (6%) Query: 14 DLINILSLLNKGEDKSC-IVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVI 71 ++ I+SL K + C +VGG VRD L+ + +D+DI T R+ + SK + Sbjct: 10 NIFRIISLSAKRIQQDCYVVGGYVRDFLLGKRIYEDLDILTIGEGIRLAKEVSK---HIN 66 Query: 72 PTS-----ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 PT +GT + + + R + ++ + D RRDFTINA Sbjct: 67 PTPRINIFKRFGTAMLEYKNHKIEFVGSRKESYHLYSRKPIIEIGSLQDDQKRRDFTINA 126 Query: 127 LYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 L G++ID GGL+DL +T++ ++ +D LR++R RF A + I Sbjct: 127 LAISLNERNYGELIDPFGGLSDLERKTLRTPLNSDVTYSDDPLRMMRAIRF-ATQLQFFI 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 D + + + + I+S ERI E NK+L +K P + +Y G+ Sbjct: 186 DKSSFQSIQRNRNRINIVSMERIIEEFNKILLSKKPSIGLFLLYESGLL 234 >gi|229507201|ref|ZP_04396707.1| poly(A) polymerase [Vibrio cholerae BX 330286] gi|229355946|gb|EEO20866.1| poly(A) polymerase [Vibrio cholerae BX 330286] Length = 318 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 6/149 (4%) Query: 116 DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTINA+Y + I DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 8 DAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFA 67 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + +I+ D + L+ + + R++ E K+L+A + L M +F+++ Sbjct: 68 VKL-DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQL 126 Query: 235 FLDVQE-ISLDQLSQVIEAEQVFEWKIDS 262 F + E + D S+ EQ+ + +D+ Sbjct: 127 FPTIAEHFTADHSSKT---EQMLDLVLDA 152 >gi|222100844|ref|YP_002535412.1| TRNA nucleotidyl transferase-related protein [Thermotoga neapolitana DSM 4359] gi|221573234|gb|ACM24046.1| TRNA nucleotidyl transferase-related protein [Thermotoga neapolitana DSM 4359] Length = 864 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 28/239 (11%) Query: 15 LINILSLLNKGEDKSC----IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 L+N+ LL K D+ +VGG VRD L+ + DIDI ++ M F++ K Sbjct: 455 LLNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIENLDIDI---VVEGNAME-FAEYAKKF 510 Query: 71 IPTSI----SYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +P + + T + + DI T R + V K D RRDFTIN Sbjct: 511 LPAKLVKHEKFMTASLFLKGGLRIDIATARMEYYESPARLPDVEMSTIKKDLYRRDFTIN 570 Query: 126 A----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRF---FAH 176 A L G ++D+ GG DL+ I+ + H + ++D RILR RF F Sbjct: 571 AMAIKLNPGDFGLLVDFFGGYRDLKEGIIRVL----HTLSFVDDPTRILRAIRFEQRFDF 626 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + E+ ++ L+ + L+ + RI EI K+LE KNPL +I M + K +F Sbjct: 627 HIEET--TERLLRQAVEEGYLEKTTGARIRQEIEKILEEKNPLKSIRRMAEFDVIKHLF 683 >gi|114564148|ref|YP_751662.1| metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB 400] gi|122298996|sp|Q07YU1|CCA_SHEFN RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|114335441|gb|ABI72823.1| metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB 400] Length = 414 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 28/201 (13%) Query: 31 IVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIP------TSISYGTIK 81 +VGGAVRD+L+ +V D D + +++ + ++ + + K P T Y + Sbjct: 5 LVGGAVRDTLLKQTVVDKDYVVVGSSV--EEMLALGYQQVGKDFPVFLHPKTQQEYALAR 62 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 RK + D D V + D LRRD TINA+ D+ G + D G Sbjct: 63 TE-RKTGYGYQGFSCDANKD-----VTLSEDL----LRRDLTINAIAQDEHGTLTDPFHG 112 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + D+ + ++ + DA ED LR+LR RF A + ++ L+ I L Sbjct: 113 IADINAKILRHVSDA---FTEDPLRVLRVARFAARFHHLGFTIAPETLQLMTDIANSGEL 169 Query: 198 KILSSERIWSEINKLLEAKNP 218 L+ ER+W E +K L +++P Sbjct: 170 DHLTPERVWQECDKALSSQSP 190 >gi|327313325|ref|YP_004328762.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella denticola F0289] gi|326945762|gb|AEA21647.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella denticola F0289] Length = 474 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ +V K S+ ++GT ++ + Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKSVLGKKAHLSVFRNFGTAQVKYKDTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINAL ++ G+++D GG++D Sbjct: 94 VEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCLNRERFGELVDPFGGVDD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR++R RF I+ + A + ++I+S ER Sbjct: 154 LWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLNFL-IEDETFEALERNADRIRIVSGER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I E+NK++ P V +Y G+ + I ++ ++LD Sbjct: 213 IEEELNKIMMTPTPSKGFVDLYRCGLLQLILPEL--VALD 250 >gi|333029157|ref|ZP_08457218.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides coprosuis DSM 18011] gi|332739754|gb|EGJ70236.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides coprosuis DSM 18011] Length = 481 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD ++ DID+ ++ ++ + S+ ++GT ++ + Sbjct: 34 VVGGYVRDIFLDRPSTDIDVVVVGSGIKIAEALTRKLGRGANLSVFKNFGTAQVKYKNLE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + +V + D RRDFTINA L ++ G++ID G+ D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNQERFGELIDPFNGMKD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L +TI+ D +D LR++R RF I+ D + + + ++I+S ER Sbjct: 154 LEEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIEDDTFDSLARNHERIEIISKER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P V + G+ IF ++ Sbjct: 213 IADELNKIILSPVPSKGFVDLDRSGLLALIFPEL 246 >gi|167579480|ref|ZP_02372354.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia thailandensis TXDOH] Length = 413 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+R+ K K P + T R++Y Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPERMAAQGFKPVGKDFPVFLHPDT-----REEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 59 -ALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +G A +ED +R+LR RF A + + + ++ L+ + + Sbjct: 118 GQADLRAKLFRHVGGA---FVEDPVRVLRVARFAARFADFAVAPETSALMREMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|262368647|ref|ZP_06061976.1| tRNA nucleotidyl transferase [Acinetobacter johnsonii SH046] gi|262316325|gb|EEY97363.1| tRNA nucleotidyl transferase [Acinetobacter johnsonii SH046] Length = 407 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 20/192 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D + P++++ + K P + T + +Y Sbjct: 5 LVGGAVRDQLLGHPYHEKDYVVVGATPEQLLAQGFQPVGKDFPVFLHPET-----KDEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y F D + D +RRD TINA+ D +G + D GG DL Sbjct: 59 --ALARTERKSGQGYHGFEFYTDSTVTLEQDLIRRDLTINAIAMDDEGTLYDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + DA +ED LR+LR RF A Y ++ L+ + L+ L+ Sbjct: 117 ELRVLRHVSDA---FVEDPLRVLRVARFAARYKTLGFSVAEETLALMQQLADSGELEALT 173 Query: 202 SERIWSEINKLL 213 ER+W E ++ L Sbjct: 174 PERVWKETSRAL 185 >gi|225555945|gb|EEH04235.1| poly(A) polymerase [Ajellomyces capsulatus G186AR] Length = 999 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 16/161 (9%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVG-GLNDLRN 147 D+ LR + +D + + D+LRRD T+NAL+ + I D+ G GL D+ N Sbjct: 145 DLVNLRKETYSDDSRNPQIEIGTPEEDALRRDATVNALFYNIHTDTIEDFTGKGLQDMEN 204 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--------SIKAKKGLKI 199 + I+ + +D LR+LR RF + G IDSD A ++KAK Sbjct: 205 KIIRTPLAPYQTFKDDPLRVLRLIRFASRLG-YTIDSDTEEAMKIEDIKVALKAK----- 258 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ ERI E+ K L +PL A+ + G++ IF + Q+ Sbjct: 259 ITQERIGVEMEKTLRGPDPLTALQRINRLGLYDTIFANHQD 299 >gi|167617577|ref|ZP_02386208.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia thailandensis Bt4] gi|257140555|ref|ZP_05588817.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia thailandensis E264] Length = 413 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+R+ K K P + T R++Y Sbjct: 6 VGGAIRDALLGLPVRDRDYVVVGATPERMAAQGFKPVGKDFPVFLHPDT-----REEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 59 -ALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +G A +ED +R+LR RF A + + + ++ L+ + + Sbjct: 118 GQADLRAKLFRHVGGA---FVEDPVRVLRVARFAARFADFAVAPETSALMREMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|320037697|gb|EFW19634.1| tRNA nucleotidyltransferase [Coccidioides posadasii str. Silveira] Length = 539 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 45/248 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL--------------------------PDRVMRIFSK 65 GG VRD L+ + DID+ + + D ++ Sbjct: 49 TGGWVRDKLLGVDSNDIDVGISTMTGYKFGVELKEYLDNPEHLEKYKSFHSDDALKSVIG 108 Query: 66 TRYKVIPTSISYGTIKIICRKKY---FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRD 121 +K+ ++ + K + D+ LR + +D R+ ++ F + D+LRRD Sbjct: 109 GLHKIEANPEKSKHLETVATKIFGLEVDLVNLRKETYSDHSRHPEMEFGT-AEEDALRRD 167 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 T+NAL+ + V D+ G G+ DLR I+ + + +D LR+LR RF + G Sbjct: 168 ATVNALFYNLHTSSVEDFTGRGIADLRAHLIRTPLEPYQTFKDDPLRVLRLIRFSSRLGY 227 Query: 179 ------EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 E+++ D + ++K K +S ERI +E+ K+L+ +PL A+ + G++ Sbjct: 228 KIDPNTEESMQHDDIKDALKLK-----ISQERIGAEVEKMLKGPDPLMALHIIERLGLYD 282 Query: 233 EIFLDVQE 240 IF + Q+ Sbjct: 283 TIFANHQD 290 >gi|315606302|ref|ZP_07881318.1| polyA polymerase family protein [Prevotella buccae ATCC 33574] gi|315251993|gb|EFU31966.1| polyA polymerase family protein [Prevotella buccae ATCC 33574] Length = 488 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 8/239 (3%) Query: 12 DSDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 D D+ + +S C +VGG VRD + DID+ +V K + Sbjct: 14 DKDIFHQISRAADSLHAECYVVGGYVRDLFLERPSGDIDVVVVGSGIQVADALKKQLGRK 73 Query: 71 IPTSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 S+ ++GT ++ + + R + + VV + D RRDFTINAL Sbjct: 74 AHISVFRNFGTAQVKYKGLEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINALA 133 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 D+ G+++D G+ DL I D +D LR++R RF +I+ Sbjct: 134 VCLNGDRFGQLVDPFDGIRDLEEGIIATPLDPDITFSDDPLRMMRCVRFATQLN-FDIEP 192 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 A + + LKI+S ERI E+NK++ A +P +++ G+ I ++ ++ + Sbjct: 193 ATYDALSRNARRLKIVSGERIADEMNKIMLAPHPSKGFYYLHETGLLYLILPELCQLDI 251 >gi|148653075|ref|YP_001280168.1| tRNA cytidylyltransferase [Psychrobacter sp. PRwf-1] gi|148572159|gb|ABQ94218.1| tRNA cytidylyltransferase [Psychrobacter sp. PRwf-1] Length = 413 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 55/238 (23%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMR-----------IF----SKTRYKVIPTS 74 IVGGAVRD L+N D D + P++++ +F +K Y + T Sbjct: 5 IVGGAVRDELLNRPYTDKDFVVVGATPEQMIEAGFIQVGADFPVFLHPKTKEEYALARTE 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-- 132 G K Y S +T + D LRRD TINA+ + + Sbjct: 65 RKSG-------KGYKGFEVYASPEVT------------IEEDLLRRDLTINAMAIEVKSL 105 Query: 133 -------GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKN 181 G+VID G +D++N+ ++ + +A ED LR+LR RF+ + E N Sbjct: 106 WDSTPLTGEVIDPYDGQSDIKNKMLRHVSEA---FSEDPLRVLRIARFYGRFYDPKAEHN 162 Query: 182 I----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 D+ L+A+I L L++ER+W E ++ L P + + G IF Sbjct: 163 FSIAPDTLALIATINDSDELACLTAERVWQETSRALMQDCPYAYLDCLQYMGALPHIF 220 >gi|323705329|ref|ZP_08116904.1| Polynucleotide adenylyltransferase region [Thermoanaerobacterium xylanolyticum LX-11] gi|323535231|gb|EGB25007.1| Polynucleotide adenylyltransferase region [Thermoanaerobacterium xylanolyticum LX-11] Length = 383 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 154/360 (42%), Gaps = 39/360 (10%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + IVGG VRD L+NL DIDI + + ++ I + T KI R Sbjct: 9 AYIVGGYVRDKLLNLESDDIDITVEGDGIKFAFMLNEILNGDIEVHDKFETAKIKTRDFE 68 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 DI + R + VV D RRDFTIN L D + ++ID G +D++N Sbjct: 69 LDIVSARKEHYERPGMLPVVQRASLADDIKRRDFTINMLALDVKTNQIIDIYNGADDIKN 128 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNID-------SDGLVASIKAKKGL 197 + I+ + D ++D RI R R+ G E++ + SDG + ++ Sbjct: 129 KLIRVVHDKS--FVDDPTRIFRAIRYSGRLGFKIEQHTEWLLRKSISDGDIFNV------ 180 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 S++RI +EI +L+ KNP + M + KE+F ++ I+ L+ +E Sbjct: 181 ---SADRIMNEIYLILKEKNPEPIVKLMKYYQLDKELFCGIK-INTTNLNTSLEKGNTLL 236 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 + L + +D ++ +K++L RE L N N L+ E +F Sbjct: 237 Y---RFLLLFYNATNEDADCLI---RKYNLKREYLSGLSDILNIKMNMSNLN--ENVSIF 288 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 DK +++ A+H + + ++ D+ K+ + GDD+ + G+ P Sbjct: 289 NTLKDK----RIEAISAVHA--MEDLNIKQAIEKYYDLAKLKR--LEINGDDIKRLGLQP 340 >gi|241954086|ref|XP_002419764.1| tRNA nucleotidyltransferase, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223643105|emb|CAX41979.1| tRNA nucleotidyltransferase, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 547 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 26/211 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDR--VMRIFSKTRYKVIPTSISY-GTIKI----- 82 I GG VRD L+ DIDIA L V + R S+++ TIK+ Sbjct: 57 ITGGWVRDKLLGNESHDIDIAVNHLTGEEFVNGLHDYLRQHEPELSMNHVHTIKMNPEKS 116 Query: 83 ----ICRKKYF----DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 C K F D LRS+ T D R + F + D++RRD T+NAL+ + Q Sbjct: 117 KHLETCTTKLFGVDIDFVNLRSEEYTHDSRVPSIEFGTP-EQDAVRRDATLNALFYNLNQ 175 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ DY GL+DL+N +K L+D LRI+R RF + + ++S+ L A + Sbjct: 176 GQIEDYTKRGLSDLQNGILKTPLAPIKTFLDDPLRIIRLIRFASKFNFV-VESETLNA-M 233 Query: 192 KAKKGLKILSS----ERIWSEINKLLEAKNP 218 K + LS+ ERI E+ K+L + NP Sbjct: 234 KEEHNKSALSTKISKERIEIELRKILTSNNP 264 >gi|304315620|ref|YP_003850765.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777122|gb|ADL67681.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 467 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 26/235 (11%) Query: 15 LIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIP 72 LIN I +L+ + +VGGA+RD ++N + D D + ++ S K +P Sbjct: 4 LINRIKRILDDYSENVYVVGGAIRDRILNREINDYDFVVIGDAASISKLVSEKLGGTFVP 63 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-- 130 + GT K++ K D T + + D + D RDFTINA+ Sbjct: 64 YAEERGTYKVVYEKTMMDFTQITGE--------------DIEEDLGHRDFTINAMALRLN 109 Query: 131 ---QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +ID GGL D++N+ I+ + + + +D LR+LR RF + Y K + Sbjct: 110 DFFDSNLIIDPFGGLYDIQNKKIRCV--SKNSFDDDPLRMLRAVRFASKY--KFAIEEDT 165 Query: 188 VASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 IK K L +SSERI +EI +L++ I M G+ IF +++ + Sbjct: 166 KNLIKEKANLISRISSERIMNEIYAILKSSESFKYIKMMDELGLIDSIFPEIKNM 220 >gi|240949655|ref|ZP_04753990.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus minor NM305] gi|240295913|gb|EER46589.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus minor NM305] Length = 414 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 47/234 (20%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIF---------------SKTRYKVIPTS 74 +VGGAVRD L+ L V+D D + P++++ + +K Y + Sbjct: 5 LVGGAVRDQLLGLPVKDRDFLVVGSTPEQLLSLGYQQVGADFPVFLHPQTKEEYALARQE 64 Query: 75 ISYGTI--KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ- 131 +G IC + TL DLI RRD TINA+ D Sbjct: 65 RKHGNGYNGFIC--DFSPAVTLEQDLI-------------------RRDLTINAMAQDPT 103 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGL 187 G++ D GG DL NR ++ + A ED LR+LR RF A + ++ L Sbjct: 104 SGQIFDPFGGKQDLENRLLRHVSPA---FEEDPLRVLRVARFAARFYSFGFRIAKETKRL 160 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + L L++ER+W E K + +P ++ G +F +++++ Sbjct: 161 MRKMAEDGELNHLTAERVWLETEKAFQTDSPHIYFAVLHEVGALAVLFPEMEKL 214 >gi|68466285|ref|XP_722917.1| potential tRNA CCA-pyrophosphorylase [Candida albicans SC5314] gi|68466576|ref|XP_722770.1| potential tRNA CCA-pyrophosphorylase [Candida albicans SC5314] gi|46444767|gb|EAL04040.1| potential tRNA CCA-pyrophosphorylase [Candida albicans SC5314] gi|46444924|gb|EAL04196.1| potential tRNA CCA-pyrophosphorylase [Candida albicans SC5314] Length = 547 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 26/211 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDR--VMRIFSKTRYKVIPTSISY-GTIKI----- 82 I GG VRD L+ DIDIA L V + R S+++ TIK+ Sbjct: 57 ITGGWVRDKLLGNESHDIDIAVNHLTGEEFVNGLHDYLRQHEPELSMNHVHTIKMNPEKS 116 Query: 83 ----ICRKKYF----DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 C K F D LRS+ T D R + F + D++RRD T+NAL+ + Q Sbjct: 117 KHLETCTTKLFGVDIDFVNLRSEEYTHDSRVPSIEFGTP-EQDAVRRDATLNALFYNLNQ 175 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ DY GL+DL+N +K L+D LRI+R RF + + ++S+ L A + Sbjct: 176 GEIEDYTKRGLSDLQNGILKTPLAPIKTFLDDPLRIIRLIRFASKFNFV-VESETLNA-M 233 Query: 192 KAKKGLKILSS----ERIWSEINKLLEAKNP 218 K + LS+ ERI E+ K+L + NP Sbjct: 234 KEEHNKSALSTKISKERIEIELRKILTSNNP 264 >gi|172061982|ref|YP_001809634.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia ambifaria MC40-6] gi|226702040|sp|B1YPB3|CCA_BURA4 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|171994499|gb|ACB65418.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia ambifaria MC40-6] Length = 413 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGFRPVGKDFPVFLHPDT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y + F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFYFAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + +GDA +ED +RILR RF A + + + D L+ + Sbjct: 118 GQADLRARVFRHVGDA---FVEDPVRILRIARFAARFADFTVADDTLALMRRMVDAGEAD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L +ER+W EI + L+EAK Sbjct: 175 ALVAERVWQEIARGLMEAK 193 >gi|217967903|ref|YP_002353409.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dictyoglomus turgidum DSM 6724] gi|217337002|gb|ACK42795.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dictyoglomus turgidum DSM 6724] Length = 469 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 34/222 (15%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP------DRVMRIFSKTRYKVIPTSISYGTIKIIC 84 IVGG +RD L+ + +DID I P D +++I + R ++ Y I I Sbjct: 25 IVGGFIRDYLLGKNPRDIDFL--IHPFNVDFIDHIVKILN-GRLVILDEERKYFRIVIKN 81 Query: 85 RKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGG 141 ++K F D T ++ ++ + +RRDFTIN++ + + K+ D + G Sbjct: 82 KEKTFVLDFTP--------------IYQQNLLFEIIRRDFTINSIVLNLKNFKIFDPLRG 127 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL IK + + + ED LRILR FRF A G K ID + L K + L + Sbjct: 128 LEDLERNVIKL--SSPNSLREDPLRILRVFRFGAS-GFK-IDKNVLENIEKNSQNLSKIK 183 Query: 202 SERIWSEINKLLEAKNPLNAIV--HMYNGGIFKEIFLDVQEI 241 ERI EI K+L KNP + M G+ KEIF ++ +I Sbjct: 184 PERIHEEIYKIL--KNPFTSHFWKEMEEYGVLKEIFPELSKI 223 >gi|328471957|gb|EGF42834.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio parahaemolyticus 10329] Length = 406 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 48/211 (22%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMR-----------IF----SKTRYKVIPTS 74 +VGGAVRD L+ + D D + P+ ++ +F +K + + T Sbjct: 5 LVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVFLHPKNKEEHALARTE 64 Query: 75 ISYGT--IKIICRKKYFDIT-TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 G+ C +FD + TL DLI RRD TINA+ D Sbjct: 65 RKSGSGYTGFDC---FFDPSVTLEEDLI-------------------RRDLTINAMAMDD 102 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGL 187 G++ D GG DL NR ++ + DA +ED LR+LR RF A ++ L Sbjct: 103 SGQLYDPYGGQADLNNRILRHVSDA---FVEDPLRVLRVARFAAKLASLGFTVAKETMQL 159 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + I L L+ ER+W E +K L P Sbjct: 160 MRDIADSGELNTLTPERVWQEWHKSLSTPRP 190 >gi|325280081|ref|YP_004252623.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Odoribacter splanchnicus DSM 20712] gi|324311890|gb|ADY32443.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Odoribacter splanchnicus DSM 20712] Length = 467 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 93/217 (42%), Gaps = 13/217 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI----ATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 ++ ++GG VRD L+ QDIDI + L + R R V ++GT Sbjct: 23 EAYVIGGYVRDLLLQRPSQDIDIVVHGSGIELAETAARRLGNLRVSVFK---NFGTAMFR 79 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYV 139 + + R + +V D RRDFTINAL + G +ID Sbjct: 80 YKGMEIEFVGARKESYRANSRKPIVEEGTIDDDQKRRDFTINALAISLNQENYGVLIDPF 139 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GGL L R IK + +D LR++R RF + + I+ + A + + L I Sbjct: 140 GGLQHLEERLIKTPLEPGLTFSDDPLRMMRAIRFASQLNFQ-IEENTFQAIAEYRHRLPI 198 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 +S ERI E NK++ + P I + G+ EIF Sbjct: 199 VSMERIMDEFNKIMLSPEPSRGIRLLDEAGLL-EIFF 234 >gi|90580764|ref|ZP_01236567.1| putative tRNA nucleotidyltransferase [Vibrio angustum S14] gi|90438032|gb|EAS63220.1| putative tRNA nucleotidyltransferase [Vibrio angustum S14] Length = 409 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVM-----RIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD+L+NL+V D D + P+ ++ +I S + P + + Sbjct: 5 LVGGAVRDTLLNLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVFLHPKTKQEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V +D + RRD TINA+ G++ID G D Sbjct: 65 RKSGHGYTGFVCYSAPD-----VTLEQDLQ----RRDLTINAIAQAATGELIDPYHGQQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKIL 200 L ++ ++ + A ED LR+LR RF FAH G ++ L+ + L+ L Sbjct: 116 LHDKILRHVSPA---FSEDPLRVLRVARFAARFAHLGFTVAPETIALMQEMVISGELESL 172 Query: 201 SSERIWSEINKLLEAKNP 218 + ER+W E K L + +P Sbjct: 173 TPERVWKEWEKSLSSDDP 190 >gi|325104976|ref|YP_004274630.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pedobacter saltans DSM 12145] gi|324973824|gb|ADY52808.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pedobacter saltans DSM 12145] Length = 470 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 6/226 (2%) Query: 15 LINILS-LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + NI+S L NK ++ ++GG VRD + +D+DI K + + Sbjct: 9 IFNIISELSNKLGIETYVIGGFVRDIFLKRPSKDVDILVIGNGPEFALEVGKKLHTNVSV 68 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYA 129 ++GT + + + R + +V + D RRDFTINA L Sbjct: 69 FKNFGTAMLRYQDLEVEFVGARKESYRTNSRKPIVENGTLEDDQKRRDFTINAMAISLSK 128 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + G++ID G+ DL+ I DA+ +D LR++R RF + I + A Sbjct: 129 NNYGQLIDPFNGVKDLKENLIITPLDANETFSDDPLRMMRAIRFATQLNFQ-IHQSAIDA 187 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + K+ +KI+S ERI E+NK++ +K P ++++ + IF Sbjct: 188 IVFNKERIKIVSKERITDELNKIILSKKPSIGFKYLFDTKLLHIIF 233 >gi|257091911|ref|YP_003165552.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044435|gb|ACV33623.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 415 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 18/194 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ L V+D D + P+ ++ + K P + T + + Sbjct: 6 VGGAVRDELLGLPVKDRDYVVVGASPEEMLARGFRPVGKDFPVFLHPST--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ T Y F D RRD TINA+ G ++D G++DL Sbjct: 58 YALARTERKTGPGYRGFAFRAAPEVSLAEDLARRDLTINAIARAADGSLLDPYHGIDDLS 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSER 204 R ++ +G A +ED +R+LR RF A + + + + L+ + A L L +ER Sbjct: 118 RRVLRHVGPA---FVEDPVRVLRIARFAARFSDFVVAPETVALMRLMVAGGELDHLVAER 174 Query: 205 IWSEINKLLEAKNP 218 +W E+ + L P Sbjct: 175 VWQEVARGLMETRP 188 >gi|289548683|ref|YP_003473671.1| polynucleotide adenylyltransferase region [Thermocrinis albus DSM 14484] gi|289182300|gb|ADC89544.1| Polynucleotide adenylyltransferase region [Thermocrinis albus DSM 14484] Length = 822 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 88/346 (25%), Positives = 144/346 (41%), Gaps = 50/346 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 + +VGG VRD L+ V DID ++ + ++ + +GT+ + + Sbjct: 451 RCYLVGGVVRDLLLGKRVWDIDFVVEGDAIKLAQRLAQYYNVNLHPFPQFGTVHLKIKDI 510 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL----YADQQGKVIDYVGGLN 143 ++ T R + VV K D LRRDFTINA+ + G +IDY GGL Sbjct: 511 KVELATTRRETYPHPGAYPVVEPASLKEDLLRRDFTINAMAVSVMEEDFGTLIDYFGGLR 570 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL+ I+ + +ED +RILR RF +G K + A + A G LS Sbjct: 571 DLKEGLIRILHPM--SFVEDPVRILRALRFAGRFGFK-LSKSTEKALLHAVSG-GFLSKA 626 Query: 204 RIWSEINKLLEA--KNPLNAIVHMYNG-GIFKEIFLDVQEISLDQLSQVIEAEQVFEW-- 258 + +N+L A + I+++Y G+ + + D+ +S D L ++ V W Sbjct: 627 PVGRLMNELRLALREERFIEILYLYKKYGVLQHLLPDII-LSQDLLDRLETLRDVVVWHR 685 Query: 259 -------KID-SLLRFIVLI------------------SW---------QDKKSILSMAK 283 +D S L I+L+ SW +DKK ++ K Sbjct: 686 MEHQQRDNVDYSWLYLILLLSHVSSDTALKILKDINAPSWVHQVYHLWRKDKKRVVQTLK 745 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 + P E+ Y + F F+ ++ E+ K LY DK+ K+ Sbjct: 746 EAQRPSEV-YRTLKGFPVAFHLLLMTEQEVSKKILLYLDKLRFVKV 790 >gi|288803036|ref|ZP_06408472.1| polyA polymerase family protein [Prevotella melaninogenica D18] gi|288334553|gb|EFC72992.1| polyA polymerase family protein [Prevotella melaninogenica D18] Length = 474 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ +V K S+ ++GT ++ R Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKAILGKKAHLSVFRNFGTAQVKYRNIE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + +V + D RRDFTINA L + G+++D GG++D Sbjct: 94 VEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFGGIDD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR++R RF I+ + A + + +KI+S ER Sbjct: 154 LWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLN-FFIEDETFEALERNAERIKIISGER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I E+NK++ P + +Y G+ + I ++ ++LD Sbjct: 213 IEEELNKIMMTATPSKGFIELYRCGLLQLILPEL--VALD 250 >gi|89075906|ref|ZP_01162281.1| putative tRNA nucleotidyltransferase [Photobacterium sp. SKA34] gi|89048347|gb|EAR53925.1| putative tRNA nucleotidyltransferase [Photobacterium sp. SKA34] Length = 409 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 22/218 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVM-----RIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD+L+NL+V D D + P+ ++ +I S + P + + Sbjct: 5 LVGGAVRDTLLNLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVFLHPKTKQEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V +D + RRD TINA+ G++ID G D Sbjct: 65 RKSGHGYTGFVCYSAPD-----VTLEQDLQ----RRDLTINAIAQTPTGELIDPYYGQQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKIL 200 L ++ ++ + A ED LR+LR RF FAH G ++ L+ + L+ L Sbjct: 116 LHDKILRHVSPA---FSEDPLRVLRVARFAARFAHLGFTVAPETIALMQEMVISGELESL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + ER+W E K L + +P I + G + ++ Sbjct: 173 TPERVWKEWEKSLSSDDPQVFITVLRQCGALSVVMPEI 210 >gi|28897188|ref|NP_796793.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio parahaemolyticus RIMD 2210633] gi|260361613|ref|ZP_05774640.1| multifunctional CCA protein [Vibrio parahaemolyticus K5030] gi|260878093|ref|ZP_05890448.1| multifunctional CCA protein [Vibrio parahaemolyticus AN-5034] gi|260895976|ref|ZP_05904472.1| multifunctional CCA protein [Vibrio parahaemolyticus Peru-466] gi|260902508|ref|ZP_05910903.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ4037] gi|73619897|sp|Q87SK9|CCA_VIBPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|28805397|dbj|BAC58677.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308086717|gb|EFO36412.1| multifunctional CCA protein [Vibrio parahaemolyticus Peru-466] gi|308089823|gb|EFO39518.1| multifunctional CCA protein [Vibrio parahaemolyticus AN-5034] gi|308109814|gb|EFO47354.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ4037] gi|308111843|gb|EFO49383.1| multifunctional CCA protein [Vibrio parahaemolyticus K5030] Length = 406 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 48/211 (22%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMR-----------IF----SKTRYKVIPTS 74 +VGGAVRD L+ + D D + P+ ++ +F +K + + T Sbjct: 5 LVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVFLHPKNKEEHALARTE 64 Query: 75 ISYGT--IKIICRKKYFDIT-TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 G+ C +FD + TL DLI RRD TINA+ D Sbjct: 65 RKSGSGYTGFDC---FFDPSVTLEEDLI-------------------RRDLTINAMAMDD 102 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGL 187 G++ D GG DL NR ++ + DA +ED LR+LR RF A ++ L Sbjct: 103 SGQLYDPYGGQADLNNRILRHVSDA---FVEDPLRVLRVARFSAKLASLGFTVAKETMQL 159 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + I L L+ ER+W E +K L P Sbjct: 160 MRDIADSGELNTLTPERVWQEWHKSLSTPRP 190 >gi|319956370|ref|YP_004167633.1| polynucleotide adenylyltransferase region [Nitratifractor salsuginis DSM 16511] gi|319418774|gb|ADV45884.1| Polynucleotide adenylyltransferase region [Nitratifractor salsuginis DSM 16511] Length = 381 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 17/188 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGGAVRD L+ V+D+D+ L + F + ++ + + G + + D Sbjct: 38 IVGGAVRDRLLGRPVKDVDLEVYGL---ELPRFEEAMERLGASGV--GKSFFVYKYGDLD 92 Query: 91 ITTLRSDL-ITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRN 147 I R + + +G R V D + + RRDFT+NAL D Q+GK++DY GGL DL Sbjct: 93 IALPRRERKVAEGHRGFAVEPAFDEREATRRRDFTVNALMYDLQEGKILDYWGGLEDLEA 152 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSERI 205 + ++ + +ED LR+LR +F A G + + + + +G+ + L RI Sbjct: 153 KRLRCVDP--ETFVEDSLRVLRGMQFAARLGFRIEE-----GTCRLCRGVDLGDLPGARI 205 Query: 206 WSEINKLL 213 + E K+ Sbjct: 206 FGEFGKMF 213 >gi|288940943|ref|YP_003443183.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] gi|288896315|gb|ADC62151.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] Length = 422 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 40/211 (18%) Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 + D LRRD T+NA+ D G+VID GGL DL+ R ++ + A ED +RILR R Sbjct: 99 EEDLLRRDLTVNAMAMDADGRVIDPHGGLADLKARILRHVSPA---FAEDPVRILRLARL 155 Query: 174 FAHY-------GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + E+ ++ L ++ A + L +R+W E+++ L + P Sbjct: 156 ATRFVGLGFRIAEETLE---LTRAMVAAGEVDALVPDRVWQEMSRALGEERPAR------ 206 Query: 227 NGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSMA 282 F E+ D ++ L ++ ++ Q +W +ID+ + ++ +L MA Sbjct: 207 ----FFEVLRDCGALARLLPEIDRLWGVPQTPKWHPEIDTGVHVMM---------VLDMA 253 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 + S E+R+ + C+ K + PEI Sbjct: 254 ARISPELEVRFAAL----CHDLGKGTTPPEI 280 >gi|170699652|ref|ZP_02890690.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia ambifaria IOP40-10] gi|170135468|gb|EDT03758.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia ambifaria IOP40-10] Length = 413 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGFRPVGKDFPVFLHPDT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y + F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFYFAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + +GDA +ED +RILR RF A + + + D L+ + Sbjct: 118 GQADLRARVFRHVGDA---FVEDPVRILRIARFAARFADFTVADDTLALMRRMVDAGEAD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W EI + L+EAK Sbjct: 175 ALVPERVWQEIARGLMEAK 193 >gi|223040792|ref|ZP_03611059.1| polyA polymerase family protein [Campylobacter rectus RM3267] gi|222877982|gb|EEF13096.1| polyA polymerase family protein [Campylobacter rectus RM3267] Length = 376 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 19/195 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ IVGG VRD+++ D D+ I P + + ++ + G + + Sbjct: 27 RAYIVGGCVRDAMLGKKTSDFDVEIYGIDPAKFDALMAQI------GACGVGKNYFVYKF 80 Query: 87 KYFDITTLRSDLIT-DGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLN 143 K FD++ R++ T +G A +V + D +A SLRRDFT+NA+ + G +D+ GG Sbjct: 81 KNFDLSLPRTENKTGEGHKAFEVAYADDERAASLRRDFTVNAMMINIFDGSFLDFYGGER 140 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LS 201 DL+ + I D + ED LR+LR +F A + I D S++ K L I LS Sbjct: 141 DLKRGILLHIDD--EKFAEDSLRVLRAVQFSARLNFR-IARD----SLRLMKRLSISDLS 193 Query: 202 SERIWSEINKLLEAK 216 ER+ E+ KL AK Sbjct: 194 RERVNGELMKLFGAK 208 >gi|284159408|ref|YP_440794.3| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia thailandensis E264] gi|83653760|gb|ABC37823.1| tRNA nucleotidyltransferase [Burkholderia thailandensis E264] Length = 432 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L V+D D + P+R+ K K P + T R++Y Sbjct: 25 VGGAIRDALLGLPVRDRDYVVVGATPERMAAQGFKPVGKDFPVFLHPDT-----REEY-- 77 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D +RRD TINA+ + G V+D G Sbjct: 78 -ALARTERKTAAGYHGFQFYYAPDVTLEQDLVRRDLTINAMAREVSPDGALVGPVVDPFG 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR + + +G A +ED +R+LR RF A + + + ++ L+ + + Sbjct: 137 GQADLRAKLFRHVGGA---FVEDPVRVLRVARFAARFADFAVAPETSALMREMVDAGEVD 193 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 194 ALVPERVWQELARGLMEAK 212 >gi|21673818|ref|NP_661883.1| polyA polymerase family protein [Chlorobium tepidum TLS] gi|21646950|gb|AAM72225.1| polyA polymerase family protein [Chlorobium tepidum TLS] Length = 475 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 25/225 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP------------DRVMRIFSKTRYKVIP-TSISY 77 IVGG VRD +M DIDI P R +F + R + Sbjct: 29 IVGGYVRDLIMQRPCTDIDIMVIGEPVPFAHALAEKLGGRNFVLFERFRTAQLELDDPKA 88 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQG 133 GT K+ +I R + + + D RRDFTINAL ++G Sbjct: 89 GTFKL-------EIVGARKESYNPESRKPITSIGTLEDDLSRRDFTINALALRLNRKERG 141 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +V+D G +R + +K D +D LR++R RF + +D L A Sbjct: 142 EVVDLFDGQRHIREKLLKTPLDPEQTFSDDPLRMMRAARFACQL-DFQLDEATLTAMSTM 200 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++I+S ER+ E K++EA+ P + +Y+ G+ KEI ++ Sbjct: 201 SSRIQIVSRERVSHEFFKIMEARKPSIGLKILYSTGLLKEIIPEL 245 >gi|238881733|gb|EEQ45371.1| hypothetical protein CAWG_03694 [Candida albicans WO-1] Length = 531 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 26/211 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDR--VMRIFSKTRYKVIPTSISY-GTIKI----- 82 I GG VRD L+ DIDIA L V + R S+++ TIK+ Sbjct: 41 ITGGWVRDKLLGNESHDIDIAVNHLTGEEFVNGLHYYLRQHEPELSMNHVHTIKMNPEKS 100 Query: 83 ----ICRKKYF----DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 C K F D LRS+ T D R + F + D++RRD T+NAL+ + Q Sbjct: 101 KHLETCTTKLFGVDIDFVNLRSEEYTHDSRVPSIEFGTP-EQDAVRRDATLNALFYNLNQ 159 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ DY GL+DL+N +K L+D LRI+R RF + + ++S+ L A + Sbjct: 160 GEIEDYTKRGLSDLQNGILKTPLAPIKTFLDDPLRIIRLIRFASKFNFV-VESETLNA-M 217 Query: 192 KAKKGLKILSS----ERIWSEINKLLEAKNP 218 K + LS+ ERI E+ K+L + NP Sbjct: 218 KEEHNKSALSTKISKERIEIELRKILTSNNP 248 >gi|257061543|ref|YP_003139431.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8802] gi|256591709|gb|ACV02596.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8802] Length = 903 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 176/435 (40%), Gaps = 76/435 (17%) Query: 31 IVGGAVRDSLMN-----LSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 IVGGAVRD L++ L +QDID+ A L + F R + Sbjct: 490 IVGGAVRDLLLSEEKEFLLLQDIDLVVDGFHRSADVGAGVELASTLQETFPNARLSI--- 546 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T ++ K + DI T R++ V + D RRDFTINAL Sbjct: 547 HGEFQTAALLWHKDPQLGSLWVDIATSRTEFYPYPAANPEVEASSIRQDLYRRDFTINAL 606 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----- 178 ++G+++D+ GG+ DLR+R I+ + + +ED RI R RF G Sbjct: 607 AVRLTPPREGELLDFFGGMLDLRSRQIRVL--HANSFIEDPTRIYRAVRFAVRLGFEIDP 664 Query: 179 --EKNID---SDGLVASIKAKKGLKILSSERIWSEINKLLEAK--NPLNAIVHMYNGG-- 229 E I+ G+ ++ + + R+ +E+ +LEA P ++ + Sbjct: 665 QTETYINYAIESGVYERLRIENHPAPALTTRLKAELKYILEANYWKPALKLLADLDALKC 724 Query: 230 IFKEIFLD------VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283 + ++ LD ++ +S L + Q+ W LLR VLIS D +A Sbjct: 725 LHSQVILDDILWWQIRYVS-RWLRYLDPENQLEHW----LLRLEVLISQLDATEGSKIAL 779 Query: 284 KFSLPREI--RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL- 340 LP+E R +S Q L ++ ++ +KI + NL Sbjct: 780 NLQLPKESLDRLKTLSQIELEIKQNLLECTKLSQI------------VKILQSYRMANLI 827 Query: 341 --THQDTCFILQVLSD-IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + +C I + + + + W K PLTG+D+ G PG + IL ++ Sbjct: 828 LVAVRSSCEIRRTIWEYLTEWSKIQAPLTGNDLKAMGYKPGPQYKVILDKLLNATLDGEI 887 Query: 398 QLSQEDLHHLLRKLI 412 + +++D LL LI Sbjct: 888 K-TKDDAEKLLNTLI 901 >gi|160896704|ref|YP_001562286.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Delftia acidovorans SPH-1] gi|160362288|gb|ABX33901.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Delftia acidovorans SPH-1] Length = 417 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/274 (23%), Positives = 117/274 (42%), Gaps = 31/274 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ +V D D + P+++ + P + T + + Sbjct: 8 MVGGAVRDRLLGRAVHDRDWVVVGATPEQMAERGFMPVGRDFPVFLHPETHEEYALAR-- 65 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDL 145 T +S G + + D RRD TINA+ A D +G + D GG DL Sbjct: 66 --TERKSGPGYRGFVVQAAPDVTLEQDLARRDLTINAMAAPPDWDGKGAIDDPYGGQADL 123 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSE 203 + R ++ + DA ED +RILR RF A + E + + L+ + A + L E Sbjct: 124 QARVLRHVTDA---FREDPVRILRVARFAARFHEFTVAPETMALMQEMVAAGEVDALVPE 180 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWKIDS 262 R+W EI++ L + P + G + +++ + + Q ++ + ++D+ Sbjct: 181 RVWQEISRGLMERQPSRMFELLRECGALAVLLPELERLWGVPQRAE-------YHPEVDT 233 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + ++ +L MA + P +RY + Sbjct: 234 GVHAMM---------VLDMAAQLDTPLPVRYACL 258 >gi|298207805|ref|YP_003715984.1| tRNA nucleotidyltransferase [Croceibacter atlanticus HTCC2559] gi|83850443|gb|EAP88311.1| tRNA nucleotidyltransferase [Croceibacter atlanticus HTCC2559] Length = 477 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 14/200 (7%) Query: 29 SCIVGGAVRDSLMNL-SVQDIDIATT----ILPDRVMRIF-SKTRYKVIPTSISYGTIKI 82 S ++GG VRD L+ + +DID+ T L +V + +K + KV T YGT + Sbjct: 32 SYVIGGFVRDFLLKRGNAKDIDVVTIGNGIALAKKVANLLPNKPKVKVFKT---YGTAML 88 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDY 138 + R + ++ V + D RRDFTINAL + G ++D Sbjct: 89 ETGDIEVEFVGARKESYSEDSRNPSVEPGTLEDDQNRRDFTINALALSLNKENFGDILDP 148 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G+ DL N IK + +D LR+LR RF + + I D L A + + +K Sbjct: 149 FNGIEDLANGVIKTPLNPDITYSDDPLRMLRAIRFASQL-DFFIQEDSLNAITRNNERIK 207 Query: 199 ILSSERIWSEINKLLEAKNP 218 I++ ER+ +EINK+L + P Sbjct: 208 IITKERVVTEINKILLSTTP 227 >gi|114775546|ref|ZP_01451114.1| tRNA nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] gi|114553657|gb|EAU56038.1| tRNA nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] Length = 468 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 122/288 (42%), Gaps = 24/288 (8%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 L G D + +VGG VRD +++++ +D D+ L + + + + +G Sbjct: 29 LATAGGD-AWLVGGCVRDLMLHINPKDYDLEVYGLTEAALSDALQQLGRCEMVGKQFGVH 87 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKV 135 K+ R+ D+ R++ + + V D + +LRRDFTINA+ D Q ++ Sbjct: 88 KLWFRQMEIDVALPRTESKSGSGHRGFVVHTDPHLTPEIATLRRDFTINAMMYDPLQHRL 147 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAK 194 +D GG +DL ++ + A ED LR LR +F A + ++ + ++ A+ Sbjct: 148 LDLHGGQSDLDEGILRHVSPA---FAEDPLRPLRAMQFAARFRFHLAPETAAMCRTLVAE 204 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L + RIW E K A++P ++ +++ G +L + + Q Sbjct: 205 A--DTLPASRIWIEWQKWSHARSPSCGLIALHDSGWLA---------CYPELQALQQCPQ 253 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 W + + L Q MAKK L R R L+ C+ Sbjct: 254 DPRWHPEGDVWVHTL---QVVDQAAEMAKKHHLSRPDREHLLFAALCH 298 >gi|19075619|ref|NP_588119.1| ATP(CTP) tRNA nucleotidyltransferase (predicted) [Schizosaccharomyces pombe 972h-] gi|74665823|sp|Q9Y7U9|CCA2_SCHPO RecName: Full=Putative CCA tRNA nucleotidyltransferase 2; AltName: Full=CCA-adding enzyme 2; AltName: Full=tRNA CCA-pyrophosphorylase 2; AltName: Full=tRNA adenylyltransferase 2; AltName: Full=tRNA nucleotidyltransferase 2 gi|4539282|emb|CAB39906.1| ATP(CTP) tRNA nucleotidyltransferase (predicted) [Schizosaccharomyces pombe] Length = 484 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 142/323 (43%), Gaps = 52/323 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP--DRVMRIF----SKTRYKVIPTSISYGTIKIIC 84 + GG VRD L+ LS D+D+ + D IF S VIP + G + + Sbjct: 39 LAGGWVRDKLLGLSSDDLDVTLNKVTGVDFANSIFEYVHSLDSDSVIPYKDALGKLTVNP 98 Query: 85 -RKKYFDITTL------------RSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + K+ + TL R++ D V + D+LRRDFT+N L+ + Sbjct: 99 DQSKHLETATLSLFDLDIDFVGLRAESYDDKSRIPSVTPGTVETDALRRDFTVNTLFFNI 158 Query: 132 QGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + + I+ + G DL+ + + LED LRILR RF + + E ID +V+ Sbjct: 159 RTEKIEDITKRGYKDLQTKVLVTPISPLQSFLEDPLRILRGIRFASRF-EFTIDP-SVVS 216 Query: 190 SIKAKKGLKI----LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 +I+ K K +S ER+ EI K+L+ N A+ +Y+ ++ F + Q Sbjct: 217 AIQDPKVCKAFEKKVSKERVGEEIEKMLKGANAKLALQLLYSTNTYQFTFDTLPAEKEFQ 276 Query: 246 LSQVIEA-EQVFE---WKIDSLLR-----------FIVLISWQDKKSILSMAKKFSLPR- 289 + + +EA E +F+ L++ ++ LI W ++++ K+F +P Sbjct: 277 IPKALEATESLFQSLALTFPKLMKLSEDEKIGLWLYVALIPWS-SQTVMVKKKQFYIPAI 335 Query: 290 ------EIRYFLISFFN--CNFN 304 ++R ++ N C FN Sbjct: 336 IAKDKLKLRSTYVNQLNQCCTFN 358 >gi|321251913|ref|XP_003192221.1| tRNA adenylyltransferase [Cryptococcus gattii WM276] gi|317458689|gb|ADV20434.1| tRNA adenylyltransferase, putative [Cryptococcus gattii WM276] Length = 504 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 34/230 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI--FSKTRYKVIPTS-------------- 74 I GG VRD L++L D+DIA +I + + K +PT Sbjct: 56 IAGGWVRDKLLSLPSSDLDIALSIPSGHSFAVAFVDFLKAKNVPTGSVGKVVANPEQSKH 115 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQG 133 + GT +I+ + D LRS+ D R +V ++ D+ RRD TINAL Y Sbjct: 116 LETGTTRIMGLE--CDFVGLRSETYADSRIPQVKPGTPFE-DASRRDLTINALFYNVHTR 172 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSD 185 +V DY GL+DL NR + +D LRI+R RF + + ++I + Sbjct: 173 QVEDYTKMGLSDLENRIARTPLPPRQTFQDDPLRIVRCVRFASRFNLTIAQEVTESIKQE 232 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + A I +K +S ERI E K+L NP +A+ +++ ++ +F Sbjct: 233 DVKAGILSK-----VSKERIGIETTKMLH-NNPFHALSLIHSLDLYPYMF 276 >gi|300770908|ref|ZP_07080785.1| polyA polymerase [Sphingobacterium spiritivorum ATCC 33861] gi|300762181|gb|EFK59000.1| polyA polymerase [Sphingobacterium spiritivorum ATCC 33861] Length = 472 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I L + + ++GG VRD +M + D+DI + + S Sbjct: 13 IKDLAQQTSTECYVIGGYVRDRIMGRPFKNDVDIVVIGSGIEFADKLGEKLNTKVTVYKS 72 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQ 132 +GT ++ + R + +V + D RRDFTINA L A Sbjct: 73 FGTAMLVYDGLNVEFVGARKESYRSDSRKPIVENGTLEDDQNRRDFTINAMAYSLNAHNY 132 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G ++D G+ D+ R I+ +D LR++R RF + G K ID + A Sbjct: 133 GALLDPFNGIEDIAQRIIRTPLAPQETFSDDPLRMMRAIRFASQLGFK-IDIHTIEAIYN 191 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ + I+S ERI E+NK++ ++ P ++++ G+ + IF Sbjct: 192 TRERISIISKERITDELNKIILSEKPSVGFKYLFDTGLLELIF 234 >gi|91228362|ref|ZP_01262289.1| tRNA nucleotidyltransferase [Vibrio alginolyticus 12G01] gi|91188061|gb|EAS74366.1| tRNA nucleotidyltransferase [Vibrio alginolyticus 12G01] Length = 406 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 89/211 (42%), Gaps = 48/211 (22%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMR-----------IF----SKTRYKVIPTS 74 +VGGAVRD L+ + D D + P+ ++ +F SK Y + T Sbjct: 5 LVGGAVRDKLLGIDSYDNDWVVVGATPEMMLSQGYTAVGKDFPVFLHPKSKEEYALARTE 64 Query: 75 ISYGT--IKIICRKKYFDIT-TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 G+ C +FD TL DLI RRD TINA+ + Sbjct: 65 RKSGSGYTGFEC---FFDQNVTLEEDLI-------------------RRDLTINAMAMES 102 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGL 187 G + D GG DL ++ ++ + DA +ED LR+LR RF A + N ++ L Sbjct: 103 DGTIHDPYGGQQDLNDKLLRHVSDA---FIEDPLRVLRVARFAAKLADLNFTVADETMRL 159 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + + L L+ ER+W E +K L P Sbjct: 160 MRHMAESGELSTLTPERVWQEWHKSLSTPRP 190 >gi|56750755|ref|YP_171456.1| polyA polymerase [Synechococcus elongatus PCC 6301] gi|56685714|dbj|BAD78936.1| polyA polymerase [Synechococcus elongatus PCC 6301] Length = 364 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 8/148 (5%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D RRDFTINA+ D Q+ VID +GG DL ++ + A +++D LR+LR +R Sbjct: 53 DLRRRDFTINAIAYDWQRQTVIDPLGGQADLEQGLLRMV--APENLVDDPLRLLRAYRQA 110 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A +I+ + A + L ++ ERIW+E+ +LL P +V G+ Sbjct: 111 AQLS-FSIEPETAAAIAQLAPLLPQVAGERIWAELQRLLNVPPPHPVLVEAIASGLLAPW 169 Query: 235 FLDVQEISLDQLS---QVIEAEQVFEWK 259 F + + L+ Q ++A Q EW Sbjct: 170 FPEATPECMSTLADHWQQLQA-QAPEWP 196 >gi|78046329|ref|YP_362504.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585892|sp|Q3BXK9|CCA_XANC5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|78034759|emb|CAJ22404.1| tRNA nucleotidyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 410 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 116 DSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D++ G++ D G DL+ R ++ +G A +ED +R+LR RF Sbjct: 87 DLLRRDFTINAIARDEETGELFDPYNGARDLQARVLRHVGPA---FVEDPVRVLRAARFM 143 Query: 175 AHYGEKN----IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A D+ L+ + A L L ER+W E+ + L P + +++ Sbjct: 144 ARLAPLGFTLAADTAALMREMAASGELDSLVPERVWQELRRALSCAQPSAFLRTLHDADA 203 Query: 231 FKEIFLDV 238 + I +V Sbjct: 204 LRVILPEV 211 >gi|260943263|ref|XP_002615930.1| hypothetical protein CLUG_04812 [Clavispora lusitaniae ATCC 42720] gi|238851220|gb|EEQ40684.1| hypothetical protein CLUG_04812 [Clavispora lusitaniae ATCC 42720] Length = 575 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 33/262 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP--DRVMRIFSKTRYKVI---PTSISYGTIKI--- 82 I GG VRD L+ D+DIA +L D ++ ++ K + + S TIK Sbjct: 73 ITGGWVRDKLLGKESNDLDIAINLLSGQDFASKLLEYSQQKGMDLGKNATSLHTIKKNPE 132 Query: 83 ------ICRKKYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 C K F D LR++ T+ V+ + D+LRRD T+NAL+ + Sbjct: 133 KSKHLETCTTKLFGLDIDFVNLRNEQYTEDSRVPVIECGTAEEDALRRDATLNALFYNLN 192 Query: 132 QGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++ D+ G GL DL N ++ ++D LR+LR RF + + I+S L S Sbjct: 193 KSEIEDFTGKGLADLENGILRTPLQPLSTFVDDPLRVLRLIRFACRFNFQ-IESSTL-ES 250 Query: 191 IKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLD 244 +K +K L S ER+ E++K+L + N + + + G+ +F D+ E+ D Sbjct: 251 MKDEKIKTALIHKISRERVGVEMDKILTSDNVPYGLRLLNHLGLTDTVFRVGDLAEVIND 310 Query: 245 -----QLSQVIEAEQVFEWKID 261 + ++ EA++ + K+D Sbjct: 311 INDSATIERLEEAKEALKLKVD 332 >gi|34558119|ref|NP_907934.1| RNA nucleotidyltransferase [Wolinella succinogenes DSM 1740] gi|34483837|emb|CAE10834.1| RNA NUCLEOTIDYLTRANSFERASE [Wolinella succinogenes] Length = 379 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 17/211 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKV 70 +S +L K VGG+VRD + ++D+D+ I P + + K Sbjct: 15 ESQARELLEFFKPHGAKVYAVGGSVRDFHLRRPLKDLDLEIHQITPALFESLMERLGAKG 74 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALY 128 + S + + + D++ R + T R +V K + RRDFTINAL Sbjct: 75 VGKSF------FVYKWQEIDLSLPRLETKTALGHRGFEVKLASSPKEAAKRRDFTINALM 128 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-G 186 + + G++ D+ GG++DL+ R + I ED LR+LR RF + G + D Sbjct: 129 LELESGELFDFFGGMDDLKRRRLHIISP--QTFQEDSLRVLRAARFASELGFRIAPEDIP 186 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKN 217 L+ SI+ LS ERI+ E +LLE + Sbjct: 187 LMRSIEVDD----LSKERIYHETKRLLEGAH 213 >gi|294054248|ref|YP_003547906.1| Polynucleotide adenylyltransferase region [Coraliomargarita akajimensis DSM 45221] gi|293613581|gb|ADE53736.1| Polynucleotide adenylyltransferase region [Coraliomargarita akajimensis DSM 45221] Length = 445 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 13/191 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD ++ ++ +D+D+ L + +++ S+G I + Sbjct: 7 RALLVGGCVRDGMLGIATKDVDVEVYGLSVDTVEAELAKEFRLDTVGRSFGV--FILKGL 64 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGGL 142 DI RS+ T ++ D + + RRDFTINA+ D ++ID G Sbjct: 65 EMDIALPRSESRTGPKHTDFEVKGDPAMTPQEAAARRDFTINAICYDPLNDELIDSYNGQ 124 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL + ++ + DA +ED LR+LR +F A + ++++D + + + L Sbjct: 125 ADLLAKRLRHVSDA---FIEDPLRVLRGMQFIARF---DLEADPETVDLCRQLNPEHLPE 178 Query: 203 ERIWSEINKLL 213 ER+W E KL+ Sbjct: 179 ERLWEEWKKLI 189 >gi|330448769|ref|ZP_08312416.1| tRNA nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492960|dbj|GAA06913.1| tRNA nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 411 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 22/198 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVM-----RIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD+L+ L+V D D + P+ ++ +I S + P + + Sbjct: 5 LVGGAVRDTLLGLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVFLHPKTKQEHALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 RK T D V +D LRRD TINA+ G++ID G D Sbjct: 65 RKSGHGYTGFVCYSAPD-----VTLEQDL----LRRDLTINAIAQAPNGELIDPYHGQQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYG-EKNIDSDGLVASIKAKKGLKIL 200 + ++ ++ + A ED LR+LR RF FAH G ++ L+ + L L Sbjct: 116 ITDKVLRHVSPA---FAEDPLRVLRVARFAARFAHLGFTVAPETMALMQEMVVSGELASL 172 Query: 201 SSERIWSEINKLLEAKNP 218 + ER+W E K L + +P Sbjct: 173 TPERVWKEWEKSLSSDDP 190 >gi|34497487|ref|NP_901702.1| tRNA adenylyltransferase [Chromobacterium violaceum ATCC 12472] gi|73619764|sp|Q7MBF4|CCA_CHRVO RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|34103342|gb|AAQ59704.1| tRNA adenylyltransferase [Chromobacterium violaceum ATCC 12472] Length = 407 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 15/216 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD L+ L V+D D + PD ++ + K P + T +++Y Sbjct: 5 IVGGAVRDRLLGLPVKDRDWVVVGSTPDEMLAQGYRPVGKDFPVFLHPET-----QEEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R I G + T + D RRD TINA+ G + D GG DL+ Sbjct: 60 LARTERK--IAKGYHGFTFHTSPEVTLEEDLARRDLTINAIAEAADGSLTDPYGGQEDLK 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERI 205 ++ + +A ED +RILR RF A + ++ L+ + L +ER+ Sbjct: 118 AGVLRHVSEA---FAEDPVRILRLARFAARFDFAVAPETMALMRRMVDDGEADALVAERV 174 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 W E+ K L P + + G I +V + Sbjct: 175 WQELAKGLMEDKPSRMFLTLRECGALARILPEVDAL 210 >gi|120556070|ref|YP_960421.1| polynucleotide adenylyltransferase region [Marinobacter aquaeolei VT8] gi|166233863|sp|A1U5G5|CCA_MARAV RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|120325919|gb|ABM20234.1| Polynucleotide adenylyltransferase region [Marinobacter aquaeolei VT8] Length = 373 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 141/347 (40%), Gaps = 52/347 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 ++ +VGGAVRD L+ L V+D D + D + R F + P + T Sbjct: 2 QTYLVGGAVRDKLLGLGVKDRDWVVVGATPEDMIQRGFKQVGAD-FPVFLHPDT-----G 55 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++Y T R G + V++ + D RRD TINA+ + G ++D G Sbjct: 56 EEYALARTERKQ--GRGYHGFSVYSAPDVSLEDDLRRRDLTINAMAETENGDLVDPFNGH 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL + ++ + +A ED LRILR RF A ++ L+ + L Sbjct: 114 ADLEQKKLRHVSEA---FAEDPLRILRTARFAARLQPLGFSICRETMALMRQMVTSGELG 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-------VQEISLDQ-LSQVI 250 L ER+W E+ + L + P G+F ++ + + E++ +Q Q + Sbjct: 171 DLVPERVWQEVQRALHEQAP----------GVFFDVLRELGALQVLIPELTDEQPFRQGL 220 Query: 251 EAEQVFEWKIDSLLR-FIVLISWQDKKSILSMAKKFSLPREIRYF--LISFFNCNFN--- 304 A Q K S + + L+S + ++ AK P + R L+ F N Sbjct: 221 SALQCIHRKQGSTAQHYAALLSGVPEPDAVARAKAMKSPNDCRELTHLVGLFMAQLNGAS 280 Query: 305 QKTLSIPEI------KKLFYLYGDK--VMIAKLKIFLALHYNNLTHQ 343 +T PE+ K F+ D+ V++ L L ++L Q Sbjct: 281 PETRLTPELAMELLDKADFWRRPDRFGVLLGTLACTLQSEPDHLIQQ 327 >gi|149194272|ref|ZP_01871369.1| putative RNA nucleotidyltransferase [Caminibacter mediatlanticus TB-2] gi|149135447|gb|EDM23926.1| putative RNA nucleotidyltransferase [Caminibacter mediatlanticus TB-2] Length = 352 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 23/194 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD + ++ + D+ I P + ++ K K + S + + K F Sbjct: 24 LVGGCVRDEFLGITPNEFDLEVYDISPQKFDKLMKKLGAKGVGKSF------FVYKWKNF 77 Query: 90 DITTLRSDL-ITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 DI R + I G R +V +D K S RRDFT+NAL + +++D+ GG+ D++ Sbjct: 78 DIALPRKETKIAKGHRGFEVEIIQDEKLASKRRDFTMNALMENIYTNEILDFWGGMKDIK 137 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFA--HYG--EKNIDSDGLVASIKAKKGLKILSS 202 N+ I+ I D +ED LR+LR +F + H+ +K I+ K L LS Sbjct: 138 NKIIRHIDDK--TFIEDSLRVLRAMQFASRLHFKIHKKTIEHC-------KKIDLNDLSK 188 Query: 203 ERIWSEINKLLEAK 216 +RI+ E K+ ++K Sbjct: 189 DRIYMEFEKMFKSK 202 >gi|332994270|gb|AEF04325.1| tRNA nucleotidyltransferase [Alteromonas sp. SN2] Length = 392 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 25/197 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIP------TSISYGTIKII 83 +VGGAVRD+L+ +V + D + P +++ K P TS Y + Sbjct: 5 LVGGAVRDTLLGRTVTERDYVVVGATPAQMLAKGFTQVGKDFPVFLHPKTSEEYALARTE 64 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 RK T D T V D K RRD T+NA+ DQ G++ID G Sbjct: 65 -RKMGSGYTGFECDAST-----SVTLEEDLK----RRDLTVNAIARDQDGELIDPYHGQK 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKI 199 DL+ + ++ + +A ED LR+ R RF +A+ G + + + AK G L Sbjct: 115 DLQQKILRHVSEAFS---EDPLRVFRVARFATRYAYLGFTIAEETLSLMTDMAKSGELTS 171 Query: 200 LSSERIWSEINK-LLEA 215 LS+ER+W E + LLEA Sbjct: 172 LSAERVWQETKRSLLEA 188 >gi|162312548|ref|NP_594651.2| tRNA nucleotidyltransferase (predicted) [Schizosaccharomyces pombe 972h-] gi|81175162|sp|Q9UTQ0|CCA1_SCHPO RecName: Full=Putative CCA tRNA nucleotidyltransferase 1; AltName: Full=CCA-adding enzyme 1; AltName: Full=tRNA CCA-pyrophosphorylase 1; AltName: Full=tRNA adenylyltransferase 1; AltName: Full=tRNA nucleotidyltransferase 1 gi|68638059|emb|CAB60249.2| tRNA nucleotidyltransferase (predicted) [Schizosaccharomyces pombe] Length = 500 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 27/263 (10%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTIL-----------------PDRVMRIFS 64 +++ E + GG VRD L+ + DID+A + PD ++ Sbjct: 31 MDRKEPEVRFAGGWVRDKLLRIESHDIDVAIDCMSGFEFAQHLQSYLAQQHPDWETKVIK 90 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFT 123 + + T +I+ DI LR D K+VF + D+LRRD T Sbjct: 91 IDANPLKSKHLETATARIMGMD--IDIVNLRHHDYTNSNSSNKLVFGTPLE-DALRRDAT 147 Query: 124 INALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 INAL+ + + K + D+ G GL DL N+ I+ A +D LR +R RF Y + N Sbjct: 148 INALFYNLKSKTVEDFTGKGLVDLSNKIIRTPLVADETFGDDPLRAVRCIRFATKY-DFN 206 Query: 182 IDSD---GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I + GL ++ +S ERI E++K+L+ N A+ +++ G+F IF + Sbjct: 207 IHEETIKGLKNPELHERLRSSISRERIGVEVDKMLKHCNTNRALKIIHSLGMFACIFGPL 266 Query: 239 QEISLDQLSQVIEAEQVFEWKID 261 + + S+ IE+ + + ID Sbjct: 267 EIHTKKLQSKNIESLSLIPYAID 289 >gi|157412497|ref|YP_001483363.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT 9215] gi|157387072|gb|ABV49777.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9215] Length = 401 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 144/317 (45%), Gaps = 58/317 (18%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----YKVIP 72 +ILS L G S +VGG +RD ++ +++DI ++P + I K K I Sbjct: 23 SILSFLPTG---SYLVGGFIRDIILGRVTEEVDI-DIVVPLNAIEIAKKISDTIGSKFII 78 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQ 131 ++II + DI S I + D RDF+IN++ + Sbjct: 79 LDKKREVVRIILNQISIDIANQVSSTI--------------EGDLRARDFSINSIAFLFD 124 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVAS 190 + + D + GL DL ++ + +L D LRILR FRF + E N D LV Sbjct: 125 KKCLFDPLNGLKDLELSLLR--THSEMNLLNDPLRILRCFRFVS---ELNFKIDLKLVDF 179 Query: 191 IKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF-------KEIFLDVQEIS 242 IK KG L +++ ERI EI+K++ +N A++ + IF FLD+QEI+ Sbjct: 180 IKKTKGKLYLVAKERINYEIHKIVNGRNAHEAVILIKKFNIFGSDDFYKNSFFLDLQEIT 239 Query: 243 LDQL--------------SQVIE--AEQVFEWKIDSLLRFIVLISWQ---DKKSI--LSM 281 +L SQ+++ + + F++ + + +L W KK I L+ Sbjct: 240 YTELTKSEKEKLLPLFFISQILDELSLERFKFSRAEIAKIKLLRKWHFFLKKKKITQLTE 299 Query: 282 AKKFSLPREIRYFLISF 298 +++F L +E+ FL SF Sbjct: 300 SERFGLHKELEMFLPSF 316 >gi|326536797|ref|YP_004301229.1| putative tRNA nucleotidyltransferase [Aeromonas phage 65] gi|312263143|gb|ADQ53399.1| putative tRNA nucleotidyltransferase [Aeromonas phage 65] Length = 348 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 16/193 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGGAVRD ++ +D+D ++ + K Y+ + + Sbjct: 2 KTYLVGGAVRDKILGRECKDMDW---VIVGETVENMDKKGYQRVGEHFP-----VYLLPN 53 Query: 88 YFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINAL-YADQQGKVIDYVGGL 142 ++ R++ T Y V T + D RRDFTINA+ Y D+ G ID GG+ Sbjct: 54 GDELAMARTERSTGDGYNDFVVDFNPTVTIQEDLYRRDFTINAIAYDDETGSYIDPYGGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 D+ ++ I+ + R +D LR+ R RF YG E ID+ + S+ LK L Sbjct: 114 CDIVSKKIRMVNPNAFR--DDPLRVFRAIRFACRYGFEIEIDTHNAIVSMVKDGKLKNLP 171 Query: 202 SERIWSEINKLLE 214 ER++ E+ K+ E Sbjct: 172 RERMFLELTKIHE 184 >gi|224419020|ref|ZP_03657026.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491] gi|253827965|ref|ZP_04870850.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491] gi|313142532|ref|ZP_07804725.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491] gi|253511371|gb|EES90030.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491] gi|313131563|gb|EFR49180.1| tRNA nucleotidyl transferase [Helicobacter canadensis MIT 98-5491] Length = 417 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 22/220 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+ L +D D + + + K K P + + Sbjct: 12 LVGGAIRDYLLGLPTKDKDYVAVGFSENDFQRYQKVG-KNFP---------VFLIDSHTQ 61 Query: 91 ITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 I R + T Y + D D RRD +INA+ D +ID G DL+ Sbjct: 62 IALARKETKTTKGYNGFSYKTDNVTLLEDLKRRDLSINAMALDLNSNTLIDPFNGKKDLQ 121 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILSSE 203 N+ ++ A ED LRILR RF A G + + + LV S+K + LK L Sbjct: 122 NKILRHTSPA---FCEDPLRILRLARFKAKLGIHWKIHPSTKVLVHSMKEE--LKTLEPN 176 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 R++ EI ++L KN ++ G+ KEIF + +++ Sbjct: 177 RVFEEIKQVLSQKNSHLFFETLFELGVLKEIFPSIYALTI 216 >gi|70953437|ref|XP_745820.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56526260|emb|CAH76727.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 638 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKK-- 87 +VGG VRD +N+S DIDI + + K K + ++G IKI C + Sbjct: 89 VVGGWVRDKFLNISNDDIDITVDNMKGSDFCNYIKEYIKDKENKNFNFGIIKINCDQSKH 148 Query: 88 -----------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 DI LR++ T+ + + D+LRRDFTIN+L+ + + KV Sbjct: 149 LETSSFNLFNFQVDIVNLRNETYTEESRIPEIAIGTPEEDALRRDFTINSLFYNLKNKKV 208 Query: 136 IDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS---DGLVASI 191 DY G++ L+N+ I + L+D LRI+R RF ++ + N+D D L Sbjct: 209 EDYTKNGIHHLKNQIISTPLNPLTTFLDDPLRIIRCIRFCGYF-DFNLDQSIFDVLKNED 267 Query: 192 KAKKGLKILSSERIWSEINKLLEAK 216 K K +S R+ SEI K+ K Sbjct: 268 IKKSFNKKISKSRLASEIIKIFSHK 292 >gi|167947375|ref|ZP_02534449.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 371 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 12/187 (6%) Query: 38 DSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT--IKIICRKKYFDITTLR 95 D L+ L V + D ++ R+ + R+ V PT S + + + R T + Sbjct: 2 DQLLELPVHERDW--VVVGGDEARMLAG-RFSVAPTVSSRCSSIPRTVVRSSRCARTETK 58 Query: 96 SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGD 155 + G V +AD RRD TINA+ DQQG++ID + G +DL N ++ I D Sbjct: 59 TGAGYKGFAVHVGPDVTLEADLRRRDLTINAMALDQQGRLIDPLHGRDDLENGRLRHISD 118 Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINK 211 A +ED +R+LR RF G + L+ + A L L ERIW E+ K Sbjct: 119 A---FIEDPVRLLRLARFADKLGCWGFRVAHSTHRLLQQMAASDDLLSLKPERIWREMEK 175 Query: 212 LLEAKNP 218 L P Sbjct: 176 SLAELQP 182 >gi|163752814|ref|ZP_02159938.1| tRNA nucleotidyltransferase [Kordia algicida OT-1] gi|161326546|gb|EDP97871.1| tRNA nucleotidyltransferase [Kordia algicida OT-1] Length = 474 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 14/201 (6%) Query: 28 KSCIVGGAVRDSLMNLS-VQDIDIATT----ILPDRVMRIF-SKTRYKVIPTSISYGTIK 81 ++ ++GG VRD L+ +DID+ L +V + +K + +V +YGT Sbjct: 25 ETYVIGGFVRDFLLKRGDAKDIDVVAVGSGIELAKKVASLLPNKPKVQVFK---NYGTAM 81 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVID 137 + ++ + R + G V + D RRDF+INA+ G ++D Sbjct: 82 VKTKEIEVEFVGARKESYERGSRNPAVENGTLQDDQNRRDFSINAMALSLNEKTFGDLLD 141 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL DL+N+ I D +D LR++R RF K ID L A + + Sbjct: 142 PFGGLEDLKNKRIVTPLDPDITYSDDPLRMMRAIRFATQLDFK-IDPVSLEAITRNSDRI 200 Query: 198 KILSSERIWSEINKLLEAKNP 218 KI+S ERI E+NK+L + P Sbjct: 201 KIISKERIVVELNKILMSNKP 221 >gi|153839924|ref|ZP_01992591.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ3810] gi|149746556|gb|EDM57544.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ3810] Length = 406 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 89/211 (42%), Gaps = 48/211 (22%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMR-----------IF----SKTRYKVIPTS 74 +VGGAVRD L+ + D D + P+ ++ +F +K + + T Sbjct: 5 LVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVFLHPKNKEEHALARTE 64 Query: 75 ISYGT--IKIICRKKYFDIT-TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 G+ C +FD + TL DLI RRD TINA+ D Sbjct: 65 RKSGSGYTGFDC---FFDPSVTLEEDLI-------------------RRDLTINAMAMDD 102 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGL 187 G++ D GG DL NR ++ + DA +ED LR+LR RF A ++ L Sbjct: 103 SGQLYDPYGGQADLNNRILRHVSDA---FVEDPLRVLRVARFAAKLASLGFTVAKETMQL 159 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + + L L+ ER+W E +K L P Sbjct: 160 MRDMADSGELNTLTPERVWQEWHKSLSTPRP 190 >gi|67478802|ref|XP_654783.1| tRNA nucleotidyltransferase [Entamoeba histolytica HM-1:IMSS] gi|56471858|gb|EAL49397.1| tRNA nucleotidyltransferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 484 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 22/223 (9%) Query: 16 INILSLLNKGE---DKSC---IVGGAVRDSLMNLSVQDIDIATTILPD-----------R 58 INI +LN + + SC +VGG VRD ++ + DIDI + + + Sbjct: 19 INIFKVLNNTKQYFNLSCTVRVVGGWVRDKILKKNSHDIDITSEGISGVQFAQYVTQYLQ 78 Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + I +K T IC D + R++ D + D + Sbjct: 79 LQGINTKLLTNREQTEHLQTATTTICELP-IDFGSPRAEEYKDNSRIPEIRKGSIYEDCI 137 Query: 119 RRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN L Y + G + DY G DL N+ I+ D +D LR+ R RF A Y Sbjct: 138 RRDFTINCLFYRIEDGMIEDYTNGYEDLVNKIIRTPIDPIQSFTDDPLRVFRGIRFSAKY 197 Query: 178 GEKNIDSDGLVASIKAK--KGLKILSSERIWSEINKLLEAKNP 218 G K I+ + L A +G+ + R E+N +L + +P Sbjct: 198 GFK-IEDNTLNAMTNPTVLRGMNKIKKSRRTPELNNILISSHP 239 >gi|325980908|ref|YP_004293310.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nitrosomonas sp. AL212] gi|325530427|gb|ADZ25148.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nitrosomonas sp. AL212] Length = 408 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 28/262 (10%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +GG+VRD L+ L V+D D + P + + + K P + T ++Y Sbjct: 1 MGGSVRDELLGLPVKDHDYVVVGASPGEMELLGYRPVGKDFPVFLHPQT-----NEQYAL 55 Query: 91 ITTLRSDLITDGRYAKVVFTRDW---KADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R I+ G VFT + D RRD TIN++ D+ G +ID G+ DL Sbjct: 56 ARTERK--ISLGYKGFEVFTSPQVTLQEDLARRDLTINSIAKDENGNIIDPFNGVADLEA 113 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIW 206 ++ + A ED +RILR RF A +G + ++ + G + L ER+W Sbjct: 114 GILRHVSPA---FSEDPVRILRAARFAARFGFRIAPETMMLMNDMVHNGEVDALVPERVW 170 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 E+ + L K P + G I +V D L V + +ID+ + Sbjct: 171 QELARGLMEKTPSRMFYMLRECGALARIIPEV-----DVLFGVPQPAHAHP-EIDTGVHI 224 Query: 267 IVLISWQDKKSILSMAKKFSLP 288 +++I + + A+ +SLP Sbjct: 225 MLVIDY-------AAAQNYSLP 239 >gi|91216560|ref|ZP_01253526.1| putative polyA polymerase [Psychroflexus torquis ATCC 700755] gi|91185354|gb|EAS71731.1| putative polyA polymerase [Psychroflexus torquis ATCC 700755] Length = 474 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 22/226 (9%) Query: 9 WFHDSDLINILSLLNKGED----KSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIF 63 ++ D+ I ++L++ D ++ ++GG VRD + +DID+ + + Sbjct: 5 YYQDALQHKIFNILSEAADDINVEAYVIGGFVRDFFLKRGKAEDIDVVAVGSGIELAKKV 64 Query: 64 SKTRYKVIPTSI--SYGTIKIICRKKYFD-----ITTLRSDLITDGRYAKVVFTRDWKAD 116 S+ P + +YGT + K FD + R D R KV D Sbjct: 65 SEKLPGKPPVKVFKTYGTAML----KIFDLEVEFVGARRESYTEDSRNPKVE-QGTLADD 119 Query: 117 SLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRDFTINAL GK++D GL DL+ + IK D +D LR++R R Sbjct: 120 QNRRDFTINALALQLNKKDFGKLLDPFKGLEDLKTQLIKTPLDPEVTFSDDPLRMIRAIR 179 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 F + K ID + A + + I+S ERI +E+NK+L+++ P Sbjct: 180 FASQLHFK-IDQKSIQAIKDHSERIDIVSKERIVTELNKILKSEKP 224 >gi|71065923|ref|YP_264650.1| tRNA nucleotidyltransferase [Psychrobacter arcticus 273-4] gi|71038908|gb|AAZ19216.1| probable tRNA nucleotidyltransferase [Psychrobacter arcticus 273-4] Length = 395 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 21/224 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ ++D D ++ + + +V + + I R++Y Sbjct: 5 LVGGAVRDQLLGRPIKDKDF--VVVGATITEMLDAGFQQVGADFPVF--LHPISREEYAL 60 Query: 91 ITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQ---------QGKVIDYVG 140 T R + G K D RRD T+NA+ + G VIDY G Sbjct: 61 ARTERKQGMGYQGFSIHASSDVSLKDDLQRRDLTVNAMAIEVTSITDDTPISGDVIDYYG 120 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKG 196 GL+D+++++++ + A ED LR+LR RF++ Y + D+ L+ + Sbjct: 121 GLDDIKSKSLRHVSSA---FSEDPLRVLRTTRFYSRYYDLGFTIADDTLALMRELVNSGE 177 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 L LSSERIW E ++ + +P +++ G E F + + Sbjct: 178 LAHLSSERIWQESSRAMMQLSPQVYWQQLFDIGALTEHFTPLHQ 221 >gi|186477645|ref|YP_001859115.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia phymatum STM815] gi|226702044|sp|B2JIM3|CCA_BURP8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|184194104|gb|ACC72069.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia phymatum STM815] Length = 417 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGMPVQDRDYVVVGATPEQMIAQGFRPVGKDFPVFLHPDT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTSAGYHGFQFFYAPDVTLEDDLARRDLTINAMAREVTPDGALIGPVIDPFN 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI- 199 G DL +R + + DA LED +RILR RF A + + ++ + L K + ++ Sbjct: 118 GREDLEHRVFRHVSDA---FLEDPVRILRVARFSARFADFSVAPETLALMRKMVEAGEVD 174 Query: 200 -LSSERIWSEINKLLEAKNP 218 L ER+W E+++ L K P Sbjct: 175 ALVPERVWQEVSRGLMEKKP 194 >gi|169806160|ref|XP_001827825.1| tRNA nucleotidyltransferase-polyA polymerase [Enterocytozoon bieneusi H348] gi|161779273|gb|EDQ31296.1| tRNA nucleotidyltransferase-polyA polymerase [Enterocytozoon bieneusi H348] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 33/228 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-FSKTRYKVIPTSISYGTIKIICRKK-- 87 I GG VRD L+ D+DIA D + I F+ I I G I +K Sbjct: 29 IAGGWVRDKLLGKKTNDMDIAL----DNITGIQFATGLISYIGIDIHVGKIMANPKKSKH 84 Query: 88 -----------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 D LR++ T R ++ + D+ RRD TINAL+ + ++ Sbjct: 85 LETAVIHLFGLTIDFVHLRTESYTTSRIPQITHGTP-QEDAYRRDITINALFYNLVTNEI 143 Query: 136 IDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-------NIDSDGL 187 D+ G GL DL+N+ I + + +L+D LRILR FRF + K I D + Sbjct: 144 EDFTGKGLYDLQNKIIDTPLNPNVTLLDDPLRILRIFRFSVKFNFKINDRIYNAIKHDNI 203 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + K +S ERIW+E+ +L +N + + G + I Sbjct: 204 RIAFSTK-----ISCERIWNELFTMLNYENGYLGLAKLSEGDFIEPIL 246 >gi|220931559|ref|YP_002508467.1| CBS domain containing protein [Halothermothrix orenii H 168] gi|219992869|gb|ACL69472.1| CBS domain containing protein [Halothermothrix orenii H 168] Length = 865 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 104/425 (24%), Positives = 178/425 (41%), Gaps = 46/425 (10%) Query: 13 SDLINILSLLNKGEDKSCI----VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 ++ ++L+++ + DK + VGG VRD ++ L D+D +R S+T Sbjct: 459 GEVYSLLNVIRREADKHDVRVYLVGGMVRDLILGLENNDLDFMVEGNIKYYLRALSRTFE 518 Query: 69 KVIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + + T +I Y D RS++ T V T + D RRDFT+NAL Sbjct: 519 ENYTYNDKFKTGRIRLNSGYNLDFAVARSEVYTSPGALPEVETGEIVEDLFRRDFTVNAL 578 Query: 128 Y--ADQQ--GKVIDYVGGLNDLRNRTIKFIGDAHHR--ILEDYLRILRFFRFFAHYGEKN 181 D Q G +ID+ GG++D+ ++ ++ + HR L+D RI+R R G Sbjct: 579 AIGVDSQNWGTLIDFFGGIHDIEHKKLRVL----HRFSFLDDPTRIIRGLRLALRLGFSF 634 Query: 182 IDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D L+ K G K +S RI E + L K + IF + LD + Sbjct: 635 QDKTNLLMKEALKFGNFKRISKPRIIKEFSLLFSKKMDRRITGLLKQFPIFHLLDLDPR- 693 Query: 241 ISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289 + + S + AE + EW L+R +VL+ ++K + + R Sbjct: 694 VDESKFSIIKRAECILDYFRQKNYNIKEW----LIRMVVLLDGVEEKKLANWGLNRG-ER 748 Query: 290 EIRYFLISFFNCNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 EI F +T S P ++KKL + + +I L L Y + Sbjct: 749 EILTFPSVIDTIIDKLRTNSTPLKLKKLLEGFTLE------QILLLLIYTEGKERK---- 798 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 QV I + K + G D+++ G+ PG + +L + +++ + +E+L Sbjct: 799 -QVYKYINYLSKVDLKINGHDLIELGLKPGPVIKEVLDKVWEAKVDNGLKTREEEL-RFA 856 Query: 409 RKLIA 413 RK+I Sbjct: 857 RKIIG 861 >gi|254526284|ref|ZP_05138336.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT 9202] gi|221537708|gb|EEE40161.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT 9202] Length = 401 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 145/316 (45%), Gaps = 56/316 (17%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----YKVIP 72 +ILS L G S +VGG +RD ++ +++DI ++P + I K K I Sbjct: 23 SILSFLPAG---SYLVGGFIRDIILGRVTEEVDI-DIVVPLNAIEIAKKISDTIGSKFII 78 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQ 131 ++II + DI S I + D RDF+IN++ + Sbjct: 79 LDKKREVVRIILNQISIDIANQVSSTI--------------EGDLRARDFSINSIAFLFD 124 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + + D + GL DL ++ + +L D LRILR FRF + K ID LV I Sbjct: 125 KRCLFDPLNGLKDLELSLLR--THSEINLLNDPLRILRCFRFVSELNFK-IDL-KLVDFI 180 Query: 192 KAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF-------KEIFLDVQEISL 243 K KG L +++ ERI EI+K++ +N A++ + IF FLD+QEI+ Sbjct: 181 KKTKGKLYLIAKERINYEIHKIVNGRNAQEAVILIKKFNIFGSDDFYKNSFFLDLQEINY 240 Query: 244 DQL--------------SQVIE--AEQVFEWKIDSLLRFIVLISWQ---DKKSI--LSMA 282 +L SQ+++ + + F++ + + +L W KK I L+ + Sbjct: 241 TELTKNEKEKLLPLFFISQILDELSLERFKFSRSEIAKIKLLRKWHFLLKKKKITQLTES 300 Query: 283 KKFSLPREIRYFLISF 298 ++F+L +E+ FL SF Sbjct: 301 ERFALHKELEMFLPSF 316 >gi|328950753|ref|YP_004368088.1| Polynucleotide adenylyltransferase region [Marinithermus hydrothermalis DSM 14884] gi|328451077|gb|AEB11978.1| Polynucleotide adenylyltransferase region [Marinithermus hydrothermalis DSM 14884] Length = 825 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 85/389 (21%), Positives = 153/389 (39%), Gaps = 42/389 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKI-ICRKKY 88 +VGGAVRD+++ +V D+D+ L V R + ++GT + + Sbjct: 462 LVGGAVRDAVLGEAVGDVDLVLEGLSAAEVARALVEALGGSYGLHYAFGTAHVRLASGVE 521 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK---VIDYVGGLNDL 145 D+ R + VV + D RRDFT+NA+ + ++D GGL DL Sbjct: 522 VDLAEAREEHYPYPGALPVVRPSTIQRDLARRDFTVNAMALRVHPEPLVLLDPYGGLEDL 581 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSER 204 R ++ + +ED RI+R R A G ++ + + K ++ S R Sbjct: 582 EERRLRPLSAVS--FVEDPSRIVRGLRLAARLGLTFAPQAEAQLEAALTPKVIRQASKSR 639 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 + E+ L +PL + M++ + + ++ + Q + +EA + E Sbjct: 640 LRGELLLALAEPSPLRVLEQMHSKRVLERLYGLRLTPPVRQALERLEALRPAEAPEPEAY 699 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 +++L +D + + + F P + L PE + +G Sbjct: 700 LYLLLYGARDPEGFV---RTFGFPGRLLEGLAVLREP---------PEDPEAVRKFGG-- 745 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW-KKPLFPLTGDDVVKYGIPPGKKVGN 383 A ++ F AL+ D W +P L G DV+ G+ PG +VG Sbjct: 746 --ALVQAFCALY----------------PDRAAWLARPRRTLRGRDVLALGLAPGPQVGE 787 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +L + + +E+L L RKL+ Sbjct: 788 VLRRVAEARARGEVRGFEEEL-ALARKLV 815 >gi|296157399|ref|ZP_06840234.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. Ch1-1] gi|295892171|gb|EFG71954.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. Ch1-1] Length = 410 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGYRPVGKDFPVFLHPQT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F + D RRD TINA+ + G VID Sbjct: 58 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVIDPFN 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL+ R + + DA LED +RILR RF A + + + + L+ + A + Sbjct: 118 GQGDLQARLFRHVSDA---FLEDPVRILRIARFAARFVDFTVAPETLALMRKMVADGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNP 218 L +ER+W E+++ L K P Sbjct: 175 ALVAERVWQEVSRGLMEKKP 194 >gi|189500462|ref|YP_001959932.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobium phaeobacteroides BS1] gi|189495903|gb|ACE04451.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobium phaeobacteroides BS1] Length = 475 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 24/233 (10%) Query: 27 DKSC-IVGGAVRDSLMNLSVQDIDIATTILP------------DRVMRIFSKTRYKVIPT 73 D C +VGG VRD+LMN DIDI P + +F + R + Sbjct: 27 DTPCYLVGGYVRDNLMNTPSHDIDIMIIGEPIPFAKLVEQELKGKNFVVFERFRTARLEL 86 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129 S ++ +I R + + + D RRDFTINAL Sbjct: 87 DSSQEETTVV------EIVGARKESYNPDSRKPITEIGSLEDDLSRRDFTINALAVQLNN 140 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + + ++D G +DL+ + ++ + H +D LR++R RF + +D L A Sbjct: 141 EHRNSIVDLFNGYDDLQKKMLRTPLEPHKTFSDDPLRMMRAARFACQL-DFQLDRQALNA 199 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + + I+S ERI E K++ + P + +Y+ GI I ++ ++ Sbjct: 200 MTDMAERITIVSRERISQEFLKIITCRKPSVGLKILYSTGILGHIMPELNAMA 252 >gi|295677988|ref|YP_003606512.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. CCGE1002] gi|295437831|gb|ADG17001.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. CCGE1002] Length = 410 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAVRDELLGVPVQDRDYVVVGATPEQMVAQGYRPVGKDFPVFLHPQT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F D + D RRD TINA+ + G VID Sbjct: 58 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVIDPFN 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL+ R + + DA LED +RILR RF A + + + + L+ + A Sbjct: 118 GQADLQARLFRHVSDA---FLEDPVRILRIARFAARFVDFTVAPETLALMREMVADGEAD 174 Query: 199 ILSSERIWSEINKLLEAKNP 218 L +ER+W E+++ L K P Sbjct: 175 ALVAERVWQEVSRGLMEKKP 194 >gi|20807771|ref|NP_622942.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter tengcongensis MB4] gi|254478691|ref|ZP_05092062.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Carboxydibrachium pacificum DSM 12653] gi|20516327|gb|AAM24546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter tengcongensis MB4] gi|214035378|gb|EEB76081.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Carboxydibrachium pacificum DSM 12653] Length = 390 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 123/269 (45%), Gaps = 21/269 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 KS IVGG VRD L L V++ DI + + + + Y + I Y K KK Sbjct: 24 KSYIVGGVVRDFL--LGVENWDIDVVVEGNGIDFAYELNEY-IKGELIEYPAFKTATIKK 80 Query: 88 ---YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLN 143 D+ + R + + D D RRDFTIN L D + K++DY GG+ Sbjct: 81 SGISIDVISARREYYDYPAALPRIEFADIYEDMRRRDFTINTLAYDVLEEKILDYFGGIE 140 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL+ I+ + + ++D RI R R+ Y E +++ L+ + K + +LS Sbjct: 141 DLKKGIIRVLHEKS--FIDDPTRIFRAIRYSVRYSFEIEANTEALMKD--SIKNISLLSE 196 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID- 261 +RI +E+ +L+ I + GI K IF DV +++D+L VF +D Sbjct: 197 DRIRNELFLILKEPKAKEMIEKVIEYGIDKVIFKDVP-VNVDKLD-------VFVEDLDL 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPRE 290 SL R ++L +K + + K L +E Sbjct: 249 SLFRLLILFYKIAEKDVEKVQKALKLNKE 277 >gi|238028856|ref|YP_002913087.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia glumae BGR1] gi|237878050|gb|ACR30383.1| Multifunctional CCA protein [Burkholderia glumae BGR1] Length = 415 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 25/200 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGA+RD+L+ L VQD D + P+++ + K P + T + Sbjct: 5 VVGGAIRDALLGLPVQDRDYVVVGATPEQLAARGFRPVGKDFPVFLHPQT--------HE 56 Query: 90 DITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYA--DQQGKV----IDYV 139 + R++ T Y F D D RRD TINA+ D G++ ID Sbjct: 57 EYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREIDPDGRITGELIDPF 116 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGL 197 GG DL + + +G A +ED +RILR RF A + + + + L+ + A + Sbjct: 117 GGRADLAAKRFRHVGPA---FVEDPVRILRVARFAARFADFTVAPETLALMREMVAAGEV 173 Query: 198 KILSSERIWSEINK-LLEAK 216 L ER+W E+++ L+EAK Sbjct: 174 DALVPERVWQEVSRGLMEAK 193 >gi|39996681|ref|NP_952632.1| polyA polymerase family protein [Geobacter sulfurreducens PCA] gi|39983562|gb|AAR34955.1| polyA polymerase family protein [Geobacter sulfurreducens PCA] gi|298505692|gb|ADI84415.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter sulfurreducens KN400] Length = 880 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 91/406 (22%), Positives = 167/406 (41%), Gaps = 43/406 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS----YGTIKIICRKK 87 VGG VRD L+ DID+ ++ D ++ F++T + + +GT I+ Sbjct: 485 VGGFVRDLLLGAENDDIDV--SVEGDGIL--FAETVANRVGCRVKSHAKFGTAVIVFPDG 540 Query: 88 Y-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 D+ + R + V K D RRDFTIN L A+ G +IDY G Sbjct: 541 LKVDVASTRLEYYETPGALPTVERSSLKMDLYRRDFTINTLAVKLNAEGFGTLIDYFGAY 600 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 DL+ +TI+ + + +ED R+ R RF G + ++ L+ + L L Sbjct: 601 RDLQEKTIRVLHNLS--FVEDPTRVFRAIRFEQRLGFPISRHTENLIKNAVKMGFLDKLG 658 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW--- 258 R+ +E+ +L + P+ AI+ M G+ + I D+ ++ + L + E ++V W Sbjct: 659 GRRLLNELVLILREREPVKAILRMSGLGLLRFIHPDLV-LAPNTLQVLDEVKKVITWFDL 717 Query: 259 -----KIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN------FNQK 306 K+++ ++ F+ L S + + S+ R LI +K Sbjct: 718 LYLGEKVETWVVYFLALTSSLPDEGFWGTCTRLSVSEHYREKLIDMRVHGEQVLEVMTRK 777 Query: 307 TLSIPEIKK---LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 ++++ F+L G + L I + + + ++ Q+ + H Sbjct: 778 AARREDVRRSDIYFWLRGLSPEVL-LYIMAKTRSDEVRRYVSLYVTQLRGIVTH------ 830 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +TGDD+ GIP G + IL +N +++ +R Sbjct: 831 -ITGDDLKTLGIPSGPRYREILDRVLTARLNGEAATRDDEMRIAVR 875 >gi|330984361|gb|EGH82464.1| polynucleotide adenylyltransferase region [Pseudomonas syringae pv. lachrymans str. M301315] Length = 450 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 87/198 (43%), Gaps = 24/198 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD L+ L D D MR Y ++ + + ++Y Sbjct: 5 LVGGYVRDKLLGLDPSDRDFVVINESPDSMR---SRGYSLVGNHFPV-FLHPLSGEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKA-----DSLRRDFTINALYADQQGKVIDYVGGLNDL 145 RS+ T +++ F WK D RRD+TINA+ G +ID GG NDL Sbjct: 59 -ALARSEKSTGKGHSE--FECAWKGVTLEDDLYRRDYTINAMAETTDGVLIDPYGGANDL 115 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILS 201 ++ + ED LRILR RF A G + ID L+ + + L+ LS Sbjct: 116 EAGMLRHVSP---HFAEDPLRILRGARFAAKLGFSVAPETID---LMRQMVGEGMLETLS 169 Query: 202 SERIWSEINKLLEAKNPL 219 +ER+W E K + NP+ Sbjct: 170 AERLWKETEKAMLTDNPV 187 >gi|119504977|ref|ZP_01627054.1| tRNA nucleotidyltransferase, putative [marine gamma proteobacterium HTCC2080] gi|119459263|gb|EAW40361.1| tRNA nucleotidyltransferase, putative [marine gamma proteobacterium HTCC2080] Length = 372 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 13/110 (11%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D RRD TINA+ D G ++D GG DL + ++ + +ED LR+LR RF A Sbjct: 87 DLTRRDLTINAMAMDDDGVLVDPYGGKRDLEAKCLRHVSP---HFVEDPLRVLRVARFAA 143 Query: 176 HY-------GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 Y E+ +D L+++I A+ L L++ERIW E + L ++P Sbjct: 144 RYYALGFTVAEETLD---LMSTIVAQGELGHLATERIWVETERALGEQHP 190 >gi|284043350|ref|YP_003393690.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Conexibacter woesei DSM 14684] gi|283947571|gb|ADB50315.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Conexibacter woesei DSM 14684] Length = 479 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 21/215 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L++ +D+D+A + + R V P S ++G +++ R+ Sbjct: 26 RTWLVGGAVRDRLLDRVTKDLDLAVDGDVEAAARGLGRAARAAVFPLSEAFGAWRVVARE 85 Query: 87 KYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLN 143 + D+ L I + D +RDFT+NA+ G ID GG Sbjct: 86 GAWQADLAPLTGATI--------------EQDLAQRDFTVNAIAEPLAGGDPIDPTGGAA 131 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL R ++ + D +R++R RF + G ++ L A+ L+ ++ E Sbjct: 132 DLAARRLRMVSPGA--FSADPVRVMRLPRFASELG-LEVEVGTLAAARLDAPRLREVAQE 188 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 R+++E+ +++ A +PL+ + M G + ++ Sbjct: 189 RVFAELRRVVGAPDPLHGLELMGQLGATAAVLPEL 223 >gi|148656064|ref|YP_001276269.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Roseiflexus sp. RS-1] gi|148568174|gb|ABQ90319.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Roseiflexus sp. RS-1] Length = 459 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 17/217 (7%) Query: 4 IVQHKWFHDSDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 ++Q W+ + ++ L + + + +VGGAVRD L+ L+ DIDI + + + Sbjct: 1 MLQPSWYALLERLDPLFAAMMRVGGHPLLVGGAVRDLLLGLTPTDIDIEVYGVDGQTLAA 60 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDIT-TLRSDLITDGR------YAKVVFTRDWKA 115 +V S+G +K+ + D+ R + D Y + R+ A Sbjct: 61 ALAPFGRVNVVGRSFGVLKMRLDEYEVDVALPSRRHPLPDEETGALPDYDPSLTPREALA 120 Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDFTINAL G +IDY GG DL R ++ +A +D LR+LR +F A Sbjct: 121 ---RRDFTINALALTPSGDLIDYFGGRADLEARVLRHTSEA---FGDDPLRVLRAMQFAA 174 Query: 176 HYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINK 211 + + ++ L ++ ++ L +RIW E K Sbjct: 175 RFAMRLAPETAALCRTLLSQA--AGLPPDRIWREWQK 209 >gi|85858488|ref|YP_460690.1| tRNA nucleotidyltransferase [Syntrophus aciditrophicus SB] gi|85721579|gb|ABC76522.1| tRNA nucleotidyltransferase [Syntrophus aciditrophicus SB] Length = 875 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 89/399 (22%), Positives = 172/399 (43%), Gaps = 53/399 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS----YGTIKI-ICR 85 +VGG VRD +M ++++D+ + D + IF+K + +S Y T + + Sbjct: 480 LVGGIVRDMVMR--IENLDVDLVVEGDGI--IFAKALAEAFGGKVSPHEKYKTAVVRLPG 535 Query: 86 KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGKVIDYVG 140 + D+ T R + G + +V + K D RRDFTIN AL + G++ID+ G Sbjct: 536 GRRIDLATARLEYYRMPGAFPEVEES-TLKLDLYRRDFTINTMAVALNPHRFGELIDFFG 594 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKG 196 D+R + I+ + +ED RILR RF + G++ + L++S Sbjct: 595 AQRDIREKKIRVLHSLS--FVEDPSRILRAVRFEKRFNFCLGKQTV---SLISSAVQAGF 649 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF-------------KEIFLDVQEISL 243 L+ + RI+ E+ ++L+ +NP+ + ++ + +E F+ V+E +L Sbjct: 650 LRNIPGRRIFHEMRQILQEENPVRCMDRLHELKVLEAIHPDLVFDERIRESFVSVRE-TL 708 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN--C 301 + E+V W L + L + ++++S+A+ L RE L++ Sbjct: 709 FWFRLLYTHEKVRPW----FLYCLALTEPMNPETVMSIAEALGLRREDAEMLLASRERVR 764 Query: 302 NFNQKTLSIPEI--KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 ++ S+ EI K F + D + L Y + F + + W+ Sbjct: 765 ELMKRLASLSEILPSKAFGILEDAALEEML-------YAMSRSRSATFKKIFSTYVTSWR 817 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 P++G D++ G ++G L + + +N + Sbjct: 818 NYRPPVSGKDLLVIGFSQNPELGRCLREIRDQGLNGEIR 856 >gi|114564439|ref|YP_751953.1| poly(A) polymerase [Shewanella frigidimarina NCIMB 400] gi|114335732|gb|ABI73114.1| poly(A) polymerase [Shewanella frigidimarina NCIMB 400] Length = 353 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 6/126 (4%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTINALY D + Y GG+NDL RTIK IGD R ED +R+LR RF Sbjct: 44 DAERRDFTINALYYDISDYSIRSYGGGINDLNARTIKLIGDPDTRYREDPVRMLRAVRFA 103 Query: 175 AHYGEKNIDSDGLVA-SIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 ++ D + A IKA L + + R++ E+ KL A M G+F Sbjct: 104 TKL---DMQIDAVTADPIKALAPLLADIPAARMYEEVLKLFFAGKAEANYNMMQRFGLFA 160 Query: 233 EIFLDV 238 +F V Sbjct: 161 PLFPQV 166 >gi|78223488|ref|YP_385235.1| polynucleotide adenylyltransferase region [Geobacter metallireducens GS-15] gi|78194743|gb|ABB32510.1| Polynucleotide adenylyltransferase region [Geobacter metallireducens GS-15] Length = 431 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 104/245 (42%), Gaps = 29/245 (11%) Query: 27 DKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-----PTSISYGTI 80 D C +VGG +RD LM V D+DIA P+ + R F+K S I Sbjct: 25 DLQCYVVGGCLRDLLMGRGVNDVDIAVGGGPEALSRRFAKECGGTFFWLDQERGHSRVVI 84 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV--IDY 138 K FD LR + D AD RDFTIN+L QG V D Sbjct: 85 KGGAGIDTFDFAPLRGE--------------DICADLALRDFTINSLAVPLQGGVELFDP 130 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 + G D+R + ++ ++ R +D LR++R FRF A G + I+++ L A + Sbjct: 131 LKGETDIRAQLVRRCAESVFR--DDPLRLVRAFRFAATLGFR-IETETLAAITTHAPLIA 187 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 + ERI E+ ++L + M + G+ +F +S Q+ EA E Sbjct: 188 NSAGERIRDELFQVLCMPGTGSVFRTMGDAGLLCVLF----GLSPSQVYPAAEAMDRVEA 243 Query: 259 KIDSL 263 + SL Sbjct: 244 VVQSL 248 >gi|254456811|ref|ZP_05070239.1| polynucleotide adenylyltransferase region [Campylobacterales bacterium GD 1] gi|207085603|gb|EDZ62887.1| polynucleotide adenylyltransferase region [Campylobacterales bacterium GD 1] Length = 416 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 21/211 (9%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP-----DRVMRIFSKTRYKVIPTSI 75 L N G ++ I+GG +RD L+N+ DIDI + + +++ F + Sbjct: 15 LENNGA-RAIIIGGFIRDFLLNIDSDDIDIEVYNVSSFEKLENILKEFG----SINKVGK 69 Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRYA---KVVFTRDWKADSLRRDFTINALYADQ 131 S+G K+ D T R D I+ G K+ D+ + RRDFTINA+ D Sbjct: 70 SFGVCKLKIDNFVLDFTLPRIDSKISSGHSGFDVKIEKDLDFITATRRRDFTINAIGYDV 129 Query: 132 QGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K I D G+NDL ++T+K + +ED LR+LR +F + + K +D + + S Sbjct: 130 VNKTILDPFNGINDLNDKTLKMVD--TETFIEDPLRVLRAVQFCSRFNLK-MDKELFLLS 186 Query: 191 --IKAKKGLKILSSERIWSEINK-LLEAKNP 218 + + L L+ ERI+ EI K LL++ P Sbjct: 187 KTMIKQNSLCELAKERIYDEIKKNLLKSTKP 217 >gi|194336308|ref|YP_002018102.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pelodictyon phaeoclathratiforme BU-1] gi|194308785|gb|ACF43485.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pelodictyon phaeoclathratiforme BU-1] Length = 479 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 27/230 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP------------DRVMRIFSKTRYKVIPTSIS-Y 77 +VGG VRD +M + DIDI T P R +F + R + S Sbjct: 29 LVGGYVRDMIMQRACTDIDIMVTGDPLPFAKAVRDKLNGRNFILFERFRTAQLELSDPIQ 88 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQG 133 G+ K+ ++ R + + V D RRDFTINAL + ++ Sbjct: 89 GSFKV-------ELVGARKESYNNDSRKPVTLIGTLDDDLSRRDFTINALALVLNSKERN 141 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID G+ D+ R +K D +D LR++R RF A + + +V ++KA Sbjct: 142 QIIDRFNGVADIEARILKTPLDPLQTFSDDPLRMMRAARFSAQLDFRLLPD--VVEAMKA 199 Query: 194 -KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + ++I+S ER+ E K++ + P ++ +Y G+ +EI +V ++ Sbjct: 200 MHERIRIVSIERVSQEFFKIMLSPRPSRGLIILYETGLLQEILPEVASMA 249 >gi|224135935|ref|XP_002327340.1| predicted protein [Populus trichocarpa] gi|222835710|gb|EEE74145.1| predicted protein [Populus trichocarpa] Length = 528 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 28/228 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKK- 87 + GG VRD L+ DIDIA D ++ K R ++ T + +I R Sbjct: 48 VAGGWVRDKLLGKECCDIDIAI----DNMLGSEFVDKVREYLLSTGEEAHGVGVIPRNPD 103 Query: 88 ---------------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + D LRS+ ++ + K D+ RRD TIN+L+ + Sbjct: 104 QSKHLETARMRLLDLWIDFVNLRSEDYSENSRIPTMTFGTAKEDAYRRDLTINSLFYNIN 163 Query: 132 QGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGL 187 V D G G+ DL++ I L+D LR+LR RF A +G E+ + Sbjct: 164 TSSVEDLTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRFGARFGFVLEEELKEAAA 223 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +K KI S ERI +EI+ ++ P+ A+ ++ + +F +F Sbjct: 224 CDDVKNALKAKI-SKERIGTEIDLMISGNQPVKAMTYIADLTLFWVVF 270 >gi|255020812|ref|ZP_05292868.1| tRNA nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254969603|gb|EET27109.1| tRNA nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 407 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 28/203 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG------TIK 81 K +VGGAVRD L ++VQD D + + I ++ G Sbjct: 2 KRYLVGGAVRDRLRGVTVQDRDY-----------VLVGAGQEDIDALLARGFRWAGKDFP 50 Query: 82 IICRKKYFDITTLRSDLIT-DGRYAKVVFTR--DWKADSLRRDFTINALYAD-QQGKVID 137 ++ ++ + R++ T G VV T + D LRRD TINA+ D + G ++D Sbjct: 51 VLIGREGEEYALARTERKTGSGHRGFVVATAGVSLEDDLLRRDLTINAMAEDLETGAIVD 110 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKK 195 GG DL R ++ + A ED LR+LR RF A + I +++ LV + A Sbjct: 111 PYGGRRDLDARVLRHVSPAFR---EDPLRVLRLARFAARLPDFVIAPETEALVRQMIAAG 167 Query: 196 GLKILSSERIWSEINKLLEAKNP 218 L LS +R+W E K L K P Sbjct: 168 ELAELSPDRVWKETEKAL--KGP 188 >gi|269967431|ref|ZP_06181491.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio alginolyticus 40B] gi|269828019|gb|EEZ82293.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio alginolyticus 40B] Length = 406 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 5 LVGGAVRDKLLGIDSYDNDWVVVGATPEMMLSQGYTAVGKDFPV--------FLHPKSKE 56 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F ++ + D +RRD TINA+ + G + D GG DL Sbjct: 57 EHALARTERKSGSGYTGFECFFDQNVTLEEDLIRRDLTINAMAMESDGTIHDPYGGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 ++ ++ + DA +ED LR+LR RF A + N ++ L+ + L L+ Sbjct: 117 NDKLLRHVSDA---FIEDPLRVLRVARFAAKLADLNFTVADETMRLMRHMAESGELSTLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E +K L P Sbjct: 174 PERVWQEWHKSLSTPRP 190 >gi|325526511|gb|EGD04073.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia sp. TJI49] Length = 360 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 114/270 (42%), Gaps = 37/270 (13%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMIAQGFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID G Sbjct: 58 YALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMARELSPDGALVGPVIDPYG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI- 199 G DL R + + DA +ED +RILR RF A + E + + L + + ++ Sbjct: 118 GQADLHARVFRHVSDA---FVEDPVRILRIARFAARFAEFTVADETLALMHRMVEAGEVD 174 Query: 200 -LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W E+ + L P + + G I +V D L V + + Sbjct: 175 ALVPERVWQELARGLMEAKPSRMFAVLRDCGALARILPEV-----DGLWGVPQRAD-YHP 228 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++D+ + ++++ + K+ +SLP Sbjct: 229 EVDTGVHVMMVVDYAAKQG-------YSLP 251 >gi|52696111|pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed With A Primer Trna And An Incoming Atp Analog gi|52696112|pdb|1VFG|B Chain B, Crystal Structure Of Trna Nucleotidyltransferase Complexed With A Primer Trna And An Incoming Atp Analog Length = 390 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRD L+ V D+D + + ++ + +GT + K Sbjct: 12 RAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKL 71 Query: 88 YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 + T R + G Y KV K D +RRDFTINA+ + G +IDY GGL Sbjct: 72 KLEFATARRETYPRPGAYPKVE-PASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGL 130 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 DL+++ I+ + +ED +RILR RF Sbjct: 131 RDLKDKVIRVLHPVS--FIEDPVRILRALRF 159 >gi|319945217|ref|ZP_08019479.1| multifunctional CCA protein [Lautropia mirabilis ATCC 51599] gi|319741787|gb|EFV94212.1| multifunctional CCA protein [Lautropia mirabilis ATCC 51599] Length = 469 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 18/194 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGG+VRD L+ L D D + PD+++ + K P + + + + Sbjct: 16 VGGSVRDELLGLPAGDRDWVVVGATPDQMLAQGFQAVGKDFPV--------FLHPQSHEE 67 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ T Y V F+ D + D LRRD TINA+ G ++D G D++ Sbjct: 68 YALARTERKTAPGYKGFAVHFSPDVTLEDDLLRRDLTINAIARAADGSLVDPFHGQADIQ 127 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSER 204 R + + A ED +RILR RF A + + I + L+ + A + L +ER Sbjct: 128 ARIFRHVSPA---FREDPVRILRLARFAARFPDFTIAPETLALMREMTAAGEVHALVAER 184 Query: 205 IWSEINKLLEAKNP 218 +W E+++ L ++ P Sbjct: 185 VWQELSRGLMSQRP 198 >gi|57234819|ref|YP_181154.1| polyA polymerase family protein [Dehalococcoides ethenogenes 195] gi|57225267|gb|AAW40324.1| polyA polymerase family protein [Dehalococcoides ethenogenes 195] Length = 418 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 158/370 (42%), Gaps = 35/370 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG VRD L++ + +D D+ T R + + T YK +G + Sbjct: 38 LVGGLVRDCLLDKTPKDADLVITANAIRFGQDLLQGTSYKTT-LHHRFGNLSADINGFKL 96 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 DITT RS++ V D KAD RRDF INA L G ++D GL DL Sbjct: 97 DITTARSEVYPAPGKLPEVGAGDIKADLFRRDFKINAMAISLSQQNSGCLVDPYDGLTDL 156 Query: 146 RNRTIKFIGDAHHRILE-DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 + + + H + + D RI R R+ G +I ++ L + + + ++ ++R Sbjct: 157 KQGKLSVL---HPKSFQDDPSRIWRALRYSERLG-FDISAETLALLKRDMQLIPLIGADR 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 + EI +LE P N + G+ + V+ + + EA +++ I ++ Sbjct: 213 LRYEIECVLEEAKPENIFLKAEETGVLRYSLPGVKADGW-LVGKFAEARKIYGTCIPRVI 271 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL----FYLY 320 + +L + +K ++ + + I L + N +PE++K +LY Sbjct: 272 YYCLLSARLNKLQAENLVTGLNPGKYITGCLGDYRYLAEN-----LPELEKTGLRPSHLY 326 Query: 321 GDKVMI-----AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 K+++ A+ ++A N L Q+ + LS+I KP L G D++ G Sbjct: 327 --KILVKCRKEARQSFYIASD-NPLVRQNISLFEEELSNI----KPH--LKGADLIALGF 377 Query: 376 PPGKKVGNIL 385 PG + IL Sbjct: 378 TPGPAIQTIL 387 >gi|125973202|ref|YP_001037112.1| polynucleotide adenylyltransferase region [Clostridium thermocellum ATCC 27405] gi|125713427|gb|ABN51919.1| Polynucleotide adenylyltransferase region [Clostridium thermocellum ATCC 27405] Length = 877 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 100/423 (23%), Positives = 175/423 (41%), Gaps = 73/423 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS----YGTIKIICRK 86 +VGG VRD + L V++ DI + D +M FS+ + ++ +GT ++ Sbjct: 483 VVGGFVRDLI--LGVENFDIDIVVEGDALM--FSEKLAQHYQAHLTKHDRFGTAVVVLED 538 Query: 87 KY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + D+ T R + VV K D RRDFTIN++ G ++D+ GG Sbjct: 539 DFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNKSGFGNIVDFYGG 598 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 DL+ I+ + + +ED RI R RF Y K + A + G L + Sbjct: 599 RRDLQMGLIRIL--YNLSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFAIKAIESGILGKV 656 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------QEISLDQLSQ 248 S ERI E +L+ N + M + I K ++ +V E +L L + Sbjct: 657 SHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLLKNAEENLACLKE 716 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN------ 302 + ++ + +LL ++L S + + +++K L +E + ++ F N Sbjct: 717 KVSVQESLDR---TLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFIEANDIILSN 773 Query: 303 ------------FNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 +N+ K LS+ + L L +K I ++ L+ NNL + TC Sbjct: 774 LSGNIDISNYDVYNELKGLSMEILFVLCMLSNEKKFIDRV----ILYINNLKNIKTC--- 826 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +TG D+ + G+ PG + +L E +N + Q ++L L+ Sbjct: 827 ---------------VTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDEL-EFLK 870 Query: 410 KLI 412 K+I Sbjct: 871 KII 873 >gi|288573162|ref|ZP_06391519.1| Polynucleotide adenylyltransferase region [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568903|gb|EFC90460.1| Polynucleotide adenylyltransferase region [Dethiosulfovibrio peptidovorans DSM 11002] Length = 397 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 21/182 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD+ + L+ D+D+ + + + I + P + C + + Sbjct: 20 LVGGAVRDAALGLAPGDLDLVVDLPMEEIAAICGGA--VIGPEGMQVCITS--CDEFVME 75 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 + L+ I + D RDFT+NA+ + G ++D G+ DLR+ + Sbjct: 76 VCPLQGGSI--------------EKDLSVRDFTVNAMALTEDGTLVDPFDGMEDLRSMVL 121 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKI--LSSERIWS 207 +F+GD R+ ED +R LR R + G ++DS V + A + +I LS R+ Sbjct: 122 RFVGDPSERLAEDPIRALRMCRLASSLGLTPSVDSLKAVRNFVATRQDRIEALSRPRVGK 181 Query: 208 EI 209 E+ Sbjct: 182 EM 183 >gi|326799830|ref|YP_004317649.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sphingobacterium sp. 21] gi|326550594|gb|ADZ78979.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sphingobacterium sp. 21] Length = 469 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 12/224 (5%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS--- 76 +L N+ + ++GG VRD LM ++ DI ++ + F++ K + T +S Sbjct: 15 NLANQYNTEIYVIGGYVRDRLMKRPFKN-DIDILVIGSGIE--FAEKVGKHLNTKVSVFK 71 Query: 77 -YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA--LYADQQ- 132 +GT + + + R + +V + D RRDFT+NA L ++Q Sbjct: 72 NFGTAMLRYDQIDIEFVGARKESYRRDSRKPIVENGSLEDDQKRRDFTVNAMALSLNKQN 131 Query: 133 -GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D G+ D++ RTI+ + +D LR++R RF + K I S A Sbjct: 132 FGELLDPFNGVKDIQIRTIRTPLEPEATFSDDPLRMMRAIRFASQLQFK-ISSPTFNAIK 190 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ +KI+S ERI E+NK++ +K P ++++ G+ + IF Sbjct: 191 SQRERIKIISKERITDELNKIICSKKPSIGFNYLFDTGLLELIF 234 >gi|163782168|ref|ZP_02177167.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1] gi|159882700|gb|EDP76205.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1] Length = 835 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 10/157 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI-SYGTIKIICRK 86 ++ IVGG VRD L+ V D+D RV ++ + V P +GT + Sbjct: 456 RAYIVGGVVRDILLGKDVWDLDFVIEGDAIRVAEELAR-EHGVQPHPFPEFGTAHVKVGS 514 Query: 87 KYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + T R + G Y KV K D +RRDFTINA+ + G +IDY GG Sbjct: 515 LKLEFATARRETYPRPGAYPKVE-KASLKEDLVRRDFTINAMAISVNPEDMGTLIDYFGG 573 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + DL+++ ++ + +ED +RILR RF G Sbjct: 574 IRDLKDKIVRVLHPVS--FIEDPVRILRALRFAGRLG 608 >gi|209517336|ref|ZP_03266179.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. H160] gi|209502219|gb|EEA02232.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia sp. H160] Length = 410 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ VQD D + P++++ + K P + T + + Sbjct: 6 VGGAVRDELLGEPVQDRDYVVVGATPEQMVAQGYRPVGKDFPVFLHPQT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F + D RRD TINA+ + G VID Sbjct: 58 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVIDPFN 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + + DA LED +RILR RF A + + + + L+ + A Sbjct: 118 GQADLRARLFRHVSDA---FLEDPVRILRIARFAARFVDFTVAPETMTLMREMVADGEAD 174 Query: 199 ILSSERIWSEINKLLEAKNP 218 L +ER+W E+++ L K P Sbjct: 175 ALVAERVWQEVSRGLMEKKP 194 >gi|92113052|ref|YP_572980.1| polynucleotide adenylyltransferase region [Chromohalobacter salexigens DSM 3043] gi|91796142|gb|ABE58281.1| Polynucleotide adenylyltransferase region [Chromohalobacter salexigens DSM 3043] Length = 384 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 20/209 (9%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKYF 89 VGGAVRD+ + V D D + P+ + T +P + + + ++Y Sbjct: 21 VGGAVRDARLGWPVTDEDWVVVGATPEAL------TARGFVPVGRDFPVFLHPVTHEEYA 74 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R G VV + D RRD TINA+ D+ G+++D G DL Sbjct: 75 LARTERKQ--GHGYTGFVVHASPEVTLEEDLARRDLTINAMAEDRDGRLVDPFDGRQDLD 132 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + +A +ED LR+LR RF+A Y E D+ L+ + + L + Sbjct: 133 ARVLRHVSEA---FVEDPLRVLRTARFWARYRELGFVIADDTKRLMRGLCDNGEIAHLVA 189 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 ER+W E K L +P+ ++ G Sbjct: 190 ERVWQETVKALGEPHPMAYFQALHECGAL 218 >gi|187925705|ref|YP_001897347.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia phytofirmans PsJN] gi|226702045|sp|B2T6V1|CCA_BURPP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|187716899|gb|ACD18123.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia phytofirmans PsJN] Length = 410 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGYRPVGKDFPVFLHPQT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F + D RRD TINA+ + G VID Sbjct: 58 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVIDPFN 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G D++ R + + DA LED +RILR RF A + + + + L+ + A + Sbjct: 118 GQGDVQARVFRHVSDA---FLEDPVRILRIARFAARFVDFTVAPETLALMRKMVADGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNP 218 L +ER+W E+++ L K P Sbjct: 175 ALVAERVWQEVSRGLMEKKP 194 >gi|91689530|gb|ABE32730.1| tRNA nucleotidyltransferase [Burkholderia xenovorans LB400] Length = 412 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 8 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGYRPVGKDFPVFLHPQT--------HEE 59 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F D + D RRD TINA+ + G VID Sbjct: 60 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVIDPFN 119 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL+ R + + DA LED +RILR RF A + + + + L+ + A + Sbjct: 120 GQGDLQARLFRHVSDA---FLEDPVRILRIARFAARFVDFTVAPETLALMRKMVADGEVD 176 Query: 199 ILSSERIWSEINKLLEAKNP 218 L +ER+W E+++ L + P Sbjct: 177 ALVAERVWQEVSRGLMERKP 196 >gi|66800349|ref|XP_629100.1| hypothetical protein DDB_G0293504 [Dictyostelium discoideum AX4] gi|60462467|gb|EAL60687.1| hypothetical protein DDB_G0293504 [Dictyostelium discoideum AX4] Length = 558 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 33/240 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKT---------RYKVIPTS------ 74 + GG VRD L DIDI ++ + + +K R VI ++ Sbjct: 97 VAGGWVRDKLRGDDSNDIDITLDNMMGEAFAELVNKHLSSKHHQTHRIGVIQSNPEQSKH 156 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 + T+K+ + D LRS+ TD V+ D+LRRD TIN+L+ + + Sbjct: 157 LETATVKVF--DMWIDFVNLRSESYTDTSRIPVISIGTPLQDALRRDLTINSLFFNINEN 214 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK------NIDSDG 186 ++ D+ G G+NDLR+ I+ + L+D LR+ R RF + K SD Sbjct: 215 RIEDFTGQGINDLRDGIIRTPLPSLTTFLDDPLRVFRSIRFASRLNFKIDEELFKAGSDP 274 Query: 187 LVA-SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 +V +IK+K +S ERI E + +L A+ P +I + G+F +F + + LD+ Sbjct: 275 VVKDAIKSK-----ISHERIAKEFDGMLSAEEPYLSIELINKFGLFDCLF-SLPTVGLDE 328 >gi|311695885|gb|ADP98758.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [marine bacterium HP15] Length = 373 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 126/314 (40%), Gaps = 44/314 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + P ++ K P + T R+ Sbjct: 2 QAYLVGGAVRDELLGLEVKDRDWVVVGATPREMLANGFKQVGADFPVFLHPRT-----RE 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 +Y T R G + V++ + D RRD TINA+ + G ++D G Sbjct: 57 EYALARTERKQ--GRGYHGFTVYSAPDVTLEQDLKRRDLTINAMAKAENGDLVDPFEGRR 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKI 199 D+ +R ++ + +A ED LRILR RF A + G D L+ + + Sbjct: 115 DIEDRKLRHVSEA---FAEDPLRILRTARFAARFHPLGFSVCDQTMALMKRMVDSGEVDH 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L ER+W E + L + P F E+ D +L+ L + +E+VF+ Sbjct: 172 LVPERVWQEFQRALHEQAP----------EAFFEVLRDCG--ALEVLIPELASEKVFQLA 219 Query: 260 IDSL------------LRFIVLISWQDKKSILSMAKKFSLPREIRYF--LISFFNCNFNQ 305 + +L RF L+S D AK P + + L++ F Sbjct: 220 MAALGCVHRRLHAETEERFAALLSPLDAPVAKDRAKALKAPNDCQNLARLVTAFTPQIRD 279 Query: 306 KTLSIPEIKKLFYL 319 PE + L L Sbjct: 280 IDAQRPEAETLLDL 293 >gi|325294588|ref|YP_004281102.1| polynucleotide adenylyltransferase region [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065036|gb|ADY73043.1| Polynucleotide adenylyltransferase region [Desulfurobacterium thermolithotrophum DSM 11699] Length = 881 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 105/430 (24%), Positives = 183/430 (42%), Gaps = 43/430 (10%) Query: 14 DLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 DL++++ + + D+ + IVGG VRD ++ D+DI + +K Sbjct: 463 DLLDLIKKIGEFADEFGVNAYIVGGFVRDLILGRKNFDVDIVIEGDATEFAKKVAKKANA 522 Query: 70 VIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + T + T ++ + D + R+++ V K D +RRDFTIN L Sbjct: 523 KVHTFERFKTATVVFPDGFRIDFASARTEVYKAPGALPEVDMAPLKKDLMRRDFTINTLA 582 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNID 183 + GK+ID+ GGL D+++R I+ + +ED RILR RF Y E Sbjct: 583 IKLNKKEFGKLIDFFGGLRDIKDRKIRILHSLS--FVEDPTRILRALRFATRYRFELGKH 640 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN----GGIFKEIFLDVQ 239 ++ L+ +K K + +RI+ E+ ++ NPL + + IF I D + Sbjct: 641 TEKLLKIAVQRKLFKTVEGQRIYHELKQIFLEDNPLRVVNKLAYYKVLSSIFPTIVWDKK 700 Query: 240 EISL-DQLSQVIEAE----QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 + L +++ +VI Q E + D LL F L+ Q + I + S+P + R Sbjct: 701 KKDLFERIRKVIIWHKLNFQEKEIRYD-LLYFGALLIGQSFQKIDTYLDNLSVPEKDREI 759 Query: 295 L------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD--TC 346 L S+ N++ + EI KL + ++V+ L +LT ++ Sbjct: 760 LKEILLKASYLLKEVNKERKN-SEIYKLVSRFKEEVL---------LFAASLTEEEWKRE 809 Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 IL+ L W+ +TGD++ G+ PG IL K I+ +E Sbjct: 810 KILEYLK---SWRFTKPAVTGDNLKAIGLKPGPIFREILNELKYRLIDKEIPEDKEKQLD 866 Query: 407 LLRKLIASSQ 416 ++ LI + Sbjct: 867 FVKFLIKEEE 876 >gi|323355345|gb|EGA87170.1| Cca1p [Saccharomyces cerevisiae VL3] Length = 537 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 38/222 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSI------ 75 I GG VRD L+ D+DIA T L + + + ++K Y P +I Sbjct: 56 ITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAK--YGAKPHNIHKIDKN 113 Query: 76 -------SYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 T K+ + D LRS+ T+ R KV F + D+LRRD T+NAL Sbjct: 114 PEKSKHLETATTKLFGVE--VDFVNLRSEKYTELSRIPKVCFGTP-EEDALRRDATLNAL 170 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 + + +G+V D+ GL DL++ ++ A L+D LR+LR RF + + N D Sbjct: 171 FYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRF---NFTID 227 Query: 186 GLVASIKAKKGLKI-----LSSERIWSEINKLLEAKNPLNAI 222 V + + + +S ER+ E+ K+L PL A+ Sbjct: 228 PEVMAEMGDPQINVAFNSKISRERVGVEMEKILVGPTPLLAL 269 >gi|297624778|ref|YP_003706212.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Truepera radiovictrix DSM 17093] gi|297165958|gb|ADI15669.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Truepera radiovictrix DSM 17093] Length = 437 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 41/252 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD+L+ +V+D+D + + + + G ++ D Sbjct: 18 LVGGAVRDTLLGRAVRDLDWLVPDPEEAAAAAAAALGTRAFALDATRGHWRVAAGGVTRD 77 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 L +DL +A+ RDF NAL AD G ++D GG DLR + + Sbjct: 78 YAPLGTDL---------------EANLRARDFCANALAADLSGALVDPTGGRGDLRAKRL 122 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSERIW 206 + + A+ + D LR LR R A G + + G + A+ + ++ER+ Sbjct: 123 RMVDAAN--LWADPLRGLRGARLAAELGFDLEAETAAAIGEHSGAVARGEVPPPAAERVG 180 Query: 207 SEINKLL--EAKNPLNAIVHMYN------------GGIFKEIF--LDVQEISLDQLSQVI 250 E+++LL E P A++H G+ + F LDV SL+ L+Q+ Sbjct: 181 VELSRLLLSERAGPGAALLHRLGLLRAYLPELERAAGVAQGGFHHLDVLAHSLEALNQLT 240 Query: 251 ----EAEQVFEW 258 EA+ W Sbjct: 241 QGFPEADLALRW 252 >gi|325928427|ref|ZP_08189618.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas perforans 91-118] gi|325541144|gb|EGD12695.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas perforans 91-118] Length = 410 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 116 DSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D++ G++ D G DL+ R ++ +G A +ED +R+LR RF Sbjct: 87 DLLRRDFTINAIARDEETGELFDPYNGARDLQARVLRHVGPA---FVEDPVRVLRAARFM 143 Query: 175 AHYGEKN----IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A ++ L+ + A L L ER+W E+ + L P + +++ Sbjct: 144 ARLAPLGFTVAAETAALMRDMAASGELDSLVPERVWQELRRALSCAQPSAFLRTLHDADA 203 Query: 231 FKEIFLDV 238 + I +V Sbjct: 204 LRVILPEV 211 >gi|213962517|ref|ZP_03390779.1| tRNA nucleotidyltransferase [Capnocytophaga sputigena Capno] gi|213954843|gb|EEB66163.1| tRNA nucleotidyltransferase [Capnocytophaga sputigena Capno] Length = 469 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 8/218 (3%) Query: 28 KSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIIC 84 +S ++GG VRD L+ + +DIDI + + ++ SI ++GT I Sbjct: 25 ESYVIGGFVRDYLLKKKLPKDIDIVSIGSGISLAEKVAEQLPNNPKVSIFKNFGTAMIKA 84 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVG 140 + R + V + + D RRDFTINA L D G +ID Sbjct: 85 DGLDIEFVGARRESYESNSRKPYVESGTLQDDQNRRDFTINAMAFSLNKDTFGDLIDPFD 144 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 GL DL + I+ + +D LR++R RF + I+ L A K+ LKI+ Sbjct: 145 GLGDLERKLIRTPLNPDITYSDDPLRMMRAIRFATQLNFE-IEEQSLKAITDNKERLKII 203 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 S+ERI E+NK+L + P + +Y G+ I ++ Sbjct: 204 SNERIVEELNKILASPKPSIGLKLLYETGLLHYILPEL 241 >gi|328952111|ref|YP_004369445.1| CBS domain containing protein [Desulfobacca acetoxidans DSM 11109] gi|328452435|gb|AEB08264.1| CBS domain containing protein [Desulfobacca acetoxidans DSM 11109] Length = 883 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 101/428 (23%), Positives = 175/428 (40%), Gaps = 48/428 (11%) Query: 14 DLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDI-----ATTILPDRVMRIFS 64 +++NIL + + D+ + +VGG VRD + DID+ A T R F Sbjct: 466 NILNILKQVGRVADELGYNAYVVGGFVRDLFLRHENLDIDLVIEGDAVTFARHYASR-FQ 524 Query: 65 KTRYKVIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 R +V + T II + D+ T R++ +V K D RRDFT Sbjct: 525 NVRVRVFQ---KFKTAVIIYPDDFKVDVATARTEYYETPGALPIVERSSLKMDLYRRDFT 581 Query: 124 INALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 IN L G +IDY G DL++ I + + +ED R+ R RF +G Sbjct: 582 INTLAVKLNERHFGILIDYFGAQRDLKDGRISVLHNLS--FVEDPSRVFRAIRFEQRFGF 639 Query: 180 KNIDSDGLVASIKAKKG----LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K L A++ G LS R++SE+ +L +NP+ AI + + K I Sbjct: 640 KITK---LTANLIENAGRINFFDRLSGTRLFSELKLILMEENPIPAISRLAEFDLLKFIH 696 Query: 236 LDVQEIS-----LDQLSQVIEAEQVFEWKIDSLLR----FIVLISWQDKKSILSMAKKFS 286 ++ + LDQ+ V+ + + DS R F+ LI ++ +L + ++ + Sbjct: 697 PMLRYDANTTWLLDQIRGVLSWHDLLFLE-DSYERWYVYFLGLIEPLKEEQLLELTRRLN 755 Query: 287 LPREIRYFLI----SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 + + L+ + + F P K+++YL + L + Sbjct: 756 MQTKFAETLLWAKGAADHTLFRLYQRENPSPKEIYYLLHELSTEFLLYMMAKTRREGSKK 815 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + FI Q+ + H L G D++ G PG + IL H ++ Q ++ Sbjct: 816 AISLFITQLRNVRPH-------LAGKDLLDMGYEPGPRYKRILQHLLDAHLDGQVQTKED 868 Query: 403 DLHHLLRK 410 ++ +LR+ Sbjct: 869 EIASVLRR 876 >gi|330812875|ref|XP_003291342.1| hypothetical protein DICPUDRAFT_38806 [Dictyostelium purpureum] gi|325078484|gb|EGC32133.1| hypothetical protein DICPUDRAFT_38806 [Dictyostelium purpureum] Length = 556 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 130/302 (43%), Gaps = 29/302 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKT---------RYKVIPTS------ 74 + GG VRD L DIDI ++ + + +K R VI ++ Sbjct: 96 VAGGWVRDKLRGDDSNDIDITLDNMMGESFAELVNKHLSGKQHQTHRIGVIQSNPEQSKH 155 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 + T+KI + D LRS+ TD + DSLRRD TIN+L+ + + Sbjct: 156 LETATVKIF--DLWIDFVNLRSETYTDNSRIPEIKIGTPLEDSLRRDLTINSLFYNINEN 213 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D+ G + DL I+ L+D LR+ R RF + K ID + + A+ Sbjct: 214 KIEDFTGKAITDLNLGIIRTPLPPLTTFLDDPLRVFRSIRFASRLYFK-IDQELVEAASN 272 Query: 193 A--KKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 A K+ +K +S ERI E + +L K P AI +Y GI+ +F + LD Sbjct: 273 AVVKEAIKSKISHERIAKEFDGMLGGKRPDLAISLIYRFGIYDCLF-SLPTSGLDHTKVH 331 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFNCNFNQKTL 308 E + + +R LI W + LS ++ L I ++ I++ N N K Sbjct: 332 TEYREQSIYYCSQAMR---LIEWGSQDEELSTKRQRLLSALCIPFYGITYLNANKKNKET 388 Query: 309 SI 310 S+ Sbjct: 389 SV 390 >gi|161621311|ref|YP_560782.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia xenovorans LB400] Length = 410 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGYRPVGKDFPVFLHPQT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F + D RRD TINA+ + G VID Sbjct: 58 YALARTERKTAAGYHGFQFFYAPDVTLEEDLARRDLTINAMAREVRPDGELTGPVIDPFN 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL+ R + + DA LED +RILR RF A + + + + L+ + A + Sbjct: 118 GQGDLQARLFRHVSDA---FLEDPVRILRIARFAARFVDFTVAPETLALMRKMVADGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNP 218 L +ER+W E+++ L + P Sbjct: 175 ALVAERVWQEVSRGLMERKP 194 >gi|6321016|ref|NP_011095.1| Cca1p [Saccharomyces cerevisiae S288c] gi|135969|sp|P21269|CCA1_YEAST RecName: Full=CCA tRNA nucleotidyltransferase, mitochondrial; AltName: Full=CCA-adding enzyme; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyltransferase; AltName: Full=tRNA nucleotidyltransferase; Flags: Precursor gi|172994|gb|AAA35160.1| transfer RNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|603409|gb|AAB64695.1| Cca1p: tRNA nucleotidyltransferase(tRNA CCA-pyrophosphorylase) [Saccharomyces cerevisiae] gi|151944885|gb|EDN63144.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae YJM789] gi|190405724|gb|EDV08991.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae RM11-1a] gi|207345792|gb|EDZ72498.1| YER168Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256271312|gb|EEU06382.1| Cca1p [Saccharomyces cerevisiae JAY291] gi|285811802|tpg|DAA07830.1| TPA: Cca1p [Saccharomyces cerevisiae S288c] Length = 546 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 38/222 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSI------ 75 I GG VRD L+ D+DIA T L + + + ++K Y P +I Sbjct: 65 ITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAK--YGAKPHNIHKIDKN 122 Query: 76 -------SYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 T K+ + D LRS+ T+ R KV F + D+LRRD T+NAL Sbjct: 123 PEKSKHLETATTKLFGVE--VDFVNLRSEKYTELSRIPKVCFGTP-EEDALRRDATLNAL 179 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 + + +G+V D+ GL DL++ ++ A L+D LR+LR RF + + N D Sbjct: 180 FYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRF---NFTID 236 Query: 186 GLVASIKAKKGLKI-----LSSERIWSEINKLLEAKNPLNAI 222 V + + + +S ER+ E+ K+L PL A+ Sbjct: 237 PEVMAEMGDPQINVAFNSKISRERVGVEMEKILVGPTPLLAL 278 >gi|115353127|ref|YP_774966.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia ambifaria AMMD] gi|122322023|sp|Q0BB41|CCA_BURCM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|115283115|gb|ABI88632.1| metal dependent phosphohydrolase [Burkholderia ambifaria AMMD] Length = 413 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 92/199 (46%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T +++Y Sbjct: 6 VGGAIRDDLLGVPVQDRDYVVVGATPEQMVAQGFRPVGKDFPVFLHPDT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYA--KVVFTRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y + F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFYFAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL R + +GDA +ED +RILR RF A + + + D L+ + Sbjct: 118 GQADLHARVFRHVGDA---FVEDPVRILRIARFAARFADFTVADDTLALMRRMVDAGEAD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L +ER+W EI + L+EAK Sbjct: 175 ALVAERVWQEIARGLMEAK 193 >gi|329904551|ref|ZP_08273857.1| tRNA nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327547911|gb|EGF32661.1| tRNA nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 384 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 20/270 (7%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD+L+ L V+D D + P+ ++ + K P + K + + Sbjct: 6 VGGAVRDALLGLPVKDRDYVVVGATPEAMVALGYTPVGKDFPV--------FLHPKTHEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ T Y VF + D RRD TINA+ G ++D GG DL Sbjct: 58 YALARTERKTAPGYRGFVFHAAGDVTLEQDLARRDLTINAIAQAGDGALVDPYGGRADLA 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILSSER 204 + + + A ED +RILR RF A + ++ +++ L+ ++ A + L ER Sbjct: 118 AKLFRHVSAA---FAEDPVRILRVARFAARFTGFSVAPETNLLMQTMVASGEVDALVPER 174 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEISLDQLSQVIEAEQVFEWKIDS 262 +W E+ + L + P I + + G + LD L L Q ++ Sbjct: 175 VWQELARGLMEQQPSRMIDVLRDCGALARLLPELDAAGPLLPLLDQAAAQGLALPLRVAV 234 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIR 292 LL + + ++A +P + R Sbjct: 235 LLHDPAGDPTSRSQRVDAIASLLKMPADCR 264 >gi|86133852|ref|ZP_01052434.1| multifunctional CCA protein [Polaribacter sp. MED152] gi|85820715|gb|EAQ41862.1| multifunctional CCA protein [Polaribacter sp. MED152] Length = 487 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 14/200 (7%) Query: 29 SCIVGGAVRDSLMNL-SVQDIDIATTI----LPDRVMRIF-SKTRYKVIPTSISYGTIKI 82 + ++GG VRD ++ + +DIDI L +V ++ +K + +V T YGT + Sbjct: 43 AYVIGGYVRDFFLDRGTAKDIDIVAVGSGIDLALQVSKLLPNKPKVQVFKT---YGTAML 99 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDY 138 + + R + T+ V + D RRDFTINAL G ++D Sbjct: 100 RYKDIEIEFVGARKESYTENSRNPQVSSGTLVDDQNRRDFTINALALSLNDANFGDILDP 159 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G+ DL ++ I+ + +D LR++R RF + I++ L A K LK Sbjct: 160 FNGMKDLEDKIIRTPLNPDITYSDDPLRMMRAIRFATQLNFE-IEASSLAAISKNAHRLK 218 Query: 199 ILSSERIWSEINKLLEAKNP 218 I++ ERI E+NK+L AK P Sbjct: 219 IITKERIVVELNKILAAKKP 238 >gi|153872383|ref|ZP_02001294.1| tRNA nucleotidyl transferase [Beggiatoa sp. PS] gi|152071151|gb|EDN68706.1| tRNA nucleotidyl transferase [Beggiatoa sp. PS] Length = 389 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D RRD TINA+ D QG++ID GL DL+ ++ + A +ED +RILR RF A Sbjct: 73 DLQRRDLTINAMALDSQGQLIDPFNGLADLQAGILRHVSLA---FVEDPVRILRVARFAA 129 Query: 176 HYGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 +G + + ++ S G + L ER+W E + LE P + N G I Sbjct: 130 RFGFRIAEETLVLMSEMVNNGEVDALVPERVWQETVRALEEMQPDKFFDVLRNCGALARI 189 Query: 235 FLDV 238 F ++ Sbjct: 190 FPEI 193 >gi|261278704|pdb|3H38|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form Ii gi|261278705|pdb|3H39|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Atp gi|261278706|pdb|3H39|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Atp gi|261278707|pdb|3H3A|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Ctp gi|261278708|pdb|3H3A|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Ctp Length = 441 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%) Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + DIDI ++ + F++ Sbjct: 16 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDI---VVEGNALE-FAEYA 71 Query: 68 YKVIPTSI----SYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +P + + T + + DI T R + V K D RRDF Sbjct: 72 KRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDF 131 Query: 123 TINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINA L G +ID+ GG DL+ I+ + ++D RILR RF + Sbjct: 132 TINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHTLS--FVDDPTRILRAIRFEQRFD 189 Query: 179 EKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + ++ + ++G L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 190 FRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF 247 >gi|67900650|ref|XP_680581.1| hypothetical protein AN7312.2 [Aspergillus nidulans FGSC A4] gi|40742173|gb|EAA61363.1| hypothetical protein AN7312.2 [Aspergillus nidulans FGSC A4] Length = 1070 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 30/238 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIA---------TTIL------PDRVMRIFSK------TRYKV 70 GG VRD L+ + DID+A T+L P+ + + + + +K+ Sbjct: 55 TGGWVRDKLLGVESHDIDVAINNMTGYQFGTMLKEYLDIPENLDKYKGQNGEKELSLHKI 114 Query: 71 IPTSISYGTIKIICRKKY---FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++ + K + D+ LR + + + + D+LRRD TINAL Sbjct: 115 EANPEKSKHLETVTTKIFGFDVDLVNLRKEAYDENSRTPQMEFGTAEEDALRRDATINAL 174 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNI 182 + + + KV D G GL+D+R+ I+ + + +D LR+LR RF + G +K+ Sbjct: 175 FYNLNESKVEDLTGRGLDDMRDEIIRTPMEPYQTFKDDPLRVLRLIRFASRLGFRIDKDT 234 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ I A LKI S ER+ E+ K+L+ +P A+ + ++ IF + Q+ Sbjct: 235 ENAMQHGDIGAALKLKI-SRERVGIEVQKMLQGPDPRGALHIIDRLNLYPIIFANFQD 291 >gi|298531108|ref|ZP_07018509.1| Polynucleotide adenylyltransferase region [Desulfonatronospira thiodismutans ASO3-1] gi|298509131|gb|EFI33036.1| Polynucleotide adenylyltransferase region [Desulfonatronospira thiodismutans ASO3-1] Length = 482 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 90/421 (21%), Positives = 172/421 (40%), Gaps = 61/421 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV---MRIFSKTRYKV 70 D+I I+ L + +VGGAVRD L+ V+D+D+A+ + + + R F R ++ Sbjct: 38 DVIRIMKTLGF---TALMVGGAVRDILLERPVRDVDLASDMPLESLRKHFRAFETGRSRL 94 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--WKADSLRRDFTINALY 128 + T+ I+ + ++ + T R+ T+ + D+ RDFTINA+ Sbjct: 95 ------FHTLCIVHQGQHLETTLFRTKHSLPAERPDQEDTKHSLFLQDARHRDFTINAMA 148 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D+Q ++D G DL I+ + + RI ED LR+LR R + + L Sbjct: 149 LDEQLDLLDPFHGKKDLDRGLIRAVENPRERITEDPLRMLRAARLACELDFEIEEKTALS 208 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNP---------------------LNAIVHMYN 227 S A+ + ++ ER+ EI K+ P ++A+ +Y+ Sbjct: 209 ISGLARD-ISDVAPERLGREILKMASLSGPRFARGIRLLDRLGLLPVVLPEVDALKGLYH 267 Query: 228 -------GGIFKEIFLDVQ--EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS- 277 G +F +Q +++ D L+ + A + + I + D+ + Sbjct: 268 DPRHHPEGDVFIHTLRAIQCNDLAHDSLNMALLAHDLGKTDIAARHPGTGFYRGHDRAAE 327 Query: 278 --ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK--VMIAKLKI-- 331 I M ++ LP I + + + L K+ + ++A+ + Sbjct: 328 YIIRQMGQRLRLPGRITRAMQAVAANHMRMHGLDEMRPSKILEMVEHPHWALLARASVCD 387 Query: 332 --FLALHYNNLTHQDTCFILQ----VLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNI 384 + L + L+ +L++ +P+ +TG+ V++ GIPPG VG I Sbjct: 388 HAARGKEHGKLQQKKIALALKKIRPLLNEATGKTRPV--ITGNQVMQAAGIPPGPMVGRI 445 Query: 385 L 385 + Sbjct: 446 I 446 >gi|189468554|ref|ZP_03017339.1| hypothetical protein BACINT_04957 [Bacteroides intestinalis DSM 17393] gi|189436818|gb|EDV05803.1| hypothetical protein BACINT_04957 [Bacteroides intestinalis DSM 17393] Length = 476 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 7/214 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICRKKY 88 +VGG VRD + +DID+ + K R + ++GT ++ R Sbjct: 34 VVGGYVRDIFLQRPSKDIDVVVVGSGIEMAEALGKRLGRGAHVALFKNFGTAQVKYRGIE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + +V + D RRDFTINAL + G+++D GG+ D Sbjct: 94 VEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNQSRFGELVDPFGGIED 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ +TI+ D +D LR++R RF ID + + + I+S ER Sbjct: 154 LKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLN-FYIDDTTFESLCRNCGRISIISKER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I E+NK++ + P + + G+ IF ++ Sbjct: 213 IADELNKIILSPIPSKGFIDLDRSGLLSLIFPEL 246 >gi|302345230|ref|YP_003813583.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella melaninogenica ATCC 25845] gi|302148944|gb|ADK95206.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella melaninogenica ATCC 25845] Length = 474 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ +V K S+ ++GT ++ + Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKVILGKKAHLSVFRNFGTAQVKYKNIE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R + + +V + D RRDFTINA L + G+++D GG++D Sbjct: 94 VEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKARFGELVDPFGGIDD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR++R RF I+ + A + + +KI+S ER Sbjct: 154 LWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLN-FFIEDETFEALERNAERIKIISGER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I E+NK++ P + +Y G+ + I ++ ++LD Sbjct: 213 IEEELNKIMMTATPSKGFIELYRCGLLQLILPEL--VALD 250 >gi|308271575|emb|CBX28183.1| hypothetical protein N47_G35070 [uncultured Desulfobacterium sp.] Length = 494 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 35/236 (14%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKVIPTS 74 IN L KG + IVGG+VRD L+ + D DI P++ + S+ + ++ Sbjct: 42 INPLIPETKG---AYIVGGSVRDLLIERTPSDYDIVVPGSPEKYASDLTSQIKGHIVKIG 98 Query: 75 ISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I ++I K FD++ + + I D D +RDFT+NA+ D Sbjct: 99 KQNQMIFRVISEKDIFDVSAISGNTIED--------------DLAKRDFTLNAICYDLYS 144 Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA------HYGEKNIDSDG 186 K ID GG+ DL ++ I+ + D D +R++R +R A Y + + +D Sbjct: 145 KTTIDPFGGVKDLLSKKIRMVSDKVFN--NDPVRLIRAYRIAAMLDFEIEYETEKVIADN 202 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + K+ ++ER+ EI K+ N I MY G+ EIF ++ +S Sbjct: 203 VKLIAKS-------AAERVKVEIFKIFSTLNSYKYINKMYETGLLFEIFPELSPLS 251 >gi|15605911|ref|NP_213288.1| poly A polymerase [Aquifex aeolicus VF5] gi|2983086|gb|AAC06692.1| poly A polymerase [Aquifex aeolicus VF5] Length = 824 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG VRD L+ V D+D + + ++ + +GT + K Sbjct: 453 RAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKL 512 Query: 88 YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGL 142 + T R + G Y KV K D +RRDFTINA+ + G +IDY GGL Sbjct: 513 KLEFATARRETYPRPGAYPKVE-PASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGL 571 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 DL+++ I+ + +ED +RILR RF Sbjct: 572 RDLKDKVIRVLHPVS--FIEDPVRILRALRF 600 >gi|294674522|ref|YP_003575138.1| polyA polymerase family protein [Prevotella ruminicola 23] gi|4204222|dbj|BAA74513.1| polyA polymerase [Prevotella ruminicola] gi|294474228|gb|ADE83617.1| polyA polymerase family protein [Prevotella ruminicola 23] Length = 479 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 13/228 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD + DID+ + + + RI K + + + +K + Sbjct: 34 VVGGYVRDIFLERPSNDIDVVVVGSGIKVAEELKRIVGKKAHLSVFKNFGTAQVKFWQKG 93 Query: 87 KYFDI--TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVG 140 +++ R + + +V + D RRDFTINA L ++ G+++D Sbjct: 94 TEYEVEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAICLNKERFGELVDPFN 153 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 GL DL + I + +D LR++R RF + I+ + VA + +KI+ Sbjct: 154 GLADLEDGIIATPLEPGITFSDDPLRMMRCIRFATQLNFQ-IEEETFVALERMADRIKIV 212 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 S ERI E+NK++ +K P V + G+ I ++ +LD + Q Sbjct: 213 SGERIKDELNKIILSKTPSRGFVDLQRCGLLNIILPELS--ALDIVEQ 258 >gi|325285000|ref|YP_004260790.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulophaga lytica DSM 7489] gi|324320454|gb|ADY27919.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulophaga lytica DSM 7489] Length = 471 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 18/202 (8%) Query: 29 SCIVGGAVRDSLMNLSV-QDIDI-ATTILPDRVMRIFSKTRYKVIPTSI------SYGTI 80 S ++GG VRD L+ +DID+ A + ++ SK +PT+ ++GT Sbjct: 29 SYVIGGFVRDFLLKRGTPKDIDVVAVGSGIELAQKVASK-----LPTNPKVSVFKNFGTA 83 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVI 136 + + R + + +V + D RRDFTINA L + G+++ Sbjct: 84 MLKYNDLELEFVGARKESYHEDSRKPIVENGSLEDDQNRRDFTINAMAISLNKNTYGQLL 143 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D G+NDL N+ IK + +D LR++R RF + NI+ ++ + K Sbjct: 144 DPFNGINDLANKIIKTPLEPGVTYSDDPLRMMRAIRFATQL-QFNIEEKSFLSITENKDR 202 Query: 197 LKILSSERIWSEINKLLEAKNP 218 + I+S ERI E+NK++ + P Sbjct: 203 INIISKERIVDELNKIMNSSKP 224 >gi|90416508|ref|ZP_01224439.1| tRNA nucleotidyltransferase [marine gamma proteobacterium HTCC2207] gi|90331707|gb|EAS46935.1| tRNA nucleotidyltransferase [marine gamma proteobacterium HTCC2207] Length = 410 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 22/197 (11%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKYF 89 VGGAVRD L+N + D + P++++ + +P + IK ++Y Sbjct: 6 VGGAVRDKLLNYFSDENDWLVVGATPEKMVEL------GYLPVGNDFPVFIKPNTGEEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 R++ + Y F + D +RRD TINA+ D +G++ D G DL Sbjct: 59 --ALARTERKSGHGYGGFTFHAAADVSLEEDLVRRDLTINAMAEDDEGQLYDPYNGQADL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + +A ED LR+LR RF A Y ++ L+ +I + L L Sbjct: 117 DKKILRHVSEA---FTEDPLRVLRVARFAARYHHLGFTIAPETMELMTAIASSGELDYLV 173 Query: 202 SERIWSEINKLLEAKNP 218 +ER+W E ++ L ++P Sbjct: 174 AERVWKETDRALGERSP 190 >gi|86142260|ref|ZP_01060770.1| tRNA nucleotidyltransferase [Leeuwenhoekiella blandensis MED217] gi|85831012|gb|EAQ49469.1| tRNA nucleotidyltransferase [Leeuwenhoekiella blandensis MED217] Length = 476 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 14/221 (6%) Query: 28 KSCIVGGAVRDSLMNL-SVQDIDI----ATTILPDRVMRIFS-KTRYKVIPTSISYGTIK 81 ++ ++GG VRD L+ S +DIDI + L +RV + K + +V T YGT Sbjct: 28 ETYVIGGYVRDFLLKRGSAKDIDIVALGSGIELAERVASLLPHKPKVQVFKT---YGTAM 84 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVID 137 + + R + + VV + D RRDFTINAL G +ID Sbjct: 85 LRDGDIEVEFVGARKESYNENSRNPVVENGSLEDDQNRRDFTINALALSLNKSTLGNLID 144 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GL DL I+ D +D LR++R RF + I+ L A K + Sbjct: 145 PFEGLVDLEREIIRTPLDPDITYSDDPLRMMRAIRFATQL-DFMIERKSLEAISANKDRI 203 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 KI++ ERI E+NK++ +K P + + G+ I ++ Sbjct: 204 KIITKERIVDELNKIMLSKTPSKGFLLLEKTGLLNYILPEL 244 >gi|16331730|ref|NP_442458.1| polyA polymerase [Synechocystis sp. PCC 6803] gi|1001282|dbj|BAA10528.1| polyA polymerase [Synechocystis sp. PCC 6803] Length = 416 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 90/412 (21%), Positives = 173/412 (41%), Gaps = 64/412 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICR 85 ++C+VGGAVRD+L+ + +D ++P + S +RY+ ++ + Sbjct: 25 QACLVGGAVRDALLGRRREYLDW-DFVVPSGAIETASAIASRYR--------AGFVVLDK 75 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLND 144 ++ + + + +D RRDFT+NA+ Y QQ K+ID + G+ D Sbjct: 76 ARHIARVVFAHGTVDFAQQEGMSLEQDLA----RRDFTVNAIAYNFQQNKLIDPMAGVGD 131 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ +K + + + +D LR+LR +R A + +D D + +K +++ER Sbjct: 132 LQRGQLKMVAAVN--LADDPLRLLRAYRQAAQL-QFTLDPDTRTVLRELAPRIKTVAAER 188 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS-------------QVIE 251 + +E N LL + ++ + GI F SL+ + ++E Sbjct: 189 VQAEFNYLLGSPRGSQWLLAAWQDGILAHWFSHANLSSLNAIGCIDLAIAAIKNQLTLVE 248 Query: 252 AEQVFE---------WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF--FN 300 +Q F+ K+ SL+ V I+ + + + + R ++ L + + Sbjct: 249 RQQFFQALGKKGIAIAKLASLVCADVKIAEGELQRLKYSRHEL---RSVQAILQGYPQLS 305 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAK-LKIFLALHYNNLTHQDTCFILQVLS------ 353 C N P +++L++ + V + K L F+ + H FI ++L+ Sbjct: 306 CLENS-----PTVRQLYFFF---VELGKYLPHFVLYALAHCPHNYHSFIFELLTHYLNSG 357 Query: 354 DIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 D + +PL +TG D++ K I P +G +L I QE L Sbjct: 358 DRLAHPQPL--ITGKDLIDKLHIKPSPLIGQLLTEINIAHIEGKISNEQEAL 407 >gi|148269360|ref|YP_001243820.1| CBS domain-containing protein [Thermotoga petrophila RKU-1] gi|147734904|gb|ABQ46244.1| CBS domain containing protein [Thermotoga petrophila RKU-1] Length = 863 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 110/240 (45%), Gaps = 24/240 (10%) Query: 12 DSDLINILSLLNKGEDKSC----IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + DIDI ++ + F++ Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIENLDIDI---VVEGNALE-FAEYA 506 Query: 68 YKVIPTSI----SYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +P + + T + + DI T R + V K D RRDF Sbjct: 507 KRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDF 566 Query: 123 TINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAH 176 TINA L + G +ID+ GG DL+ I+ + H + ++D RILR RF Sbjct: 567 TINAMAIKLNSKDFGLLIDFFGGYRDLKEGVIRVL----HTLSFVDDPTRILRAVRFEQR 622 Query: 177 YGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + ++ + ++G L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 623 FDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF 682 >gi|300853360|ref|YP_003778344.1| tRNA nucleotidyltransferase [Clostridium ljungdahlii DSM 13528] gi|300433475|gb|ADK13242.1| tRNA nucleotidyltransferase [Clostridium ljungdahlii DSM 13528] Length = 466 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 24/217 (11%) Query: 31 IVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGG +RD L++++ Q DID ++ M +YK P G + + Sbjct: 24 LVGGYIRDRLISITAQPKDIDFIFNGNIEKFMEELENRQYKFFPIKQEIGIYRCMLGNNS 83 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG---KVIDYVGGLNDL 145 DI+ + D I + D +RDFT+NA+ G KVID G + Sbjct: 84 IDISLMEGDSIEE--------------DLKKRDFTMNAIAIKLSGDKVKVIDPFYGRRSI 129 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSER 204 NR IK + D + D +RILR RF YG N+D++ + + K + + ER Sbjct: 130 DNRIIKSVTDMS--LENDPIRILRGIRFCISYGMHFNLDTEKCIEKLCYK--IMDMPMER 185 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ E +LE + A + N GI K I ++E+ Sbjct: 186 VFKEFMLILERDDYGKAFEVLDNYGILKNIIPYIEEL 222 >gi|257464494|ref|ZP_05628865.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus minor 202] gi|257450154|gb|EEV24197.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus minor 202] Length = 414 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 21/221 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ L V+D D + P++++ + + P + T +++Y Sbjct: 5 LVGGAVRDQLLGLPVKDRDFLVVGSTPEQLLSLGYQQVGADFPVFLHPQT-----KEEY- 58 Query: 90 DITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQ-QGKVIDYVGGLND 144 R + Y + F+ + + D +RRD TINA+ D G++ D G D Sbjct: 59 --ALARQERKHGNGYNGFICDFSPEVTLEQDLIRRDLTINAMAQDPTSGQIFDPFSGKQD 116 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEK-NIDSDGLVASIKAKKGLKIL 200 L NR ++ + A ED LR+LR RF A + G + ++ L+ + L L Sbjct: 117 LENRLLRHVSPA---FEEDPLRVLRVARFAARFYLLGFRIAEETKSLMRKMATDGELNHL 173 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ER+W E K + +P ++ G +F +++++ Sbjct: 174 TAERVWLETEKAFQTDSPHIYFAVLHEVGALAVLFPEMEKL 214 >gi|222616709|gb|EEE52841.1| hypothetical protein OsJ_35375 [Oryza sativa Japonica Group] Length = 554 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 43/244 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICRKK- 87 + GG VRD L+ DIDIA L + + F + Y + G I C Sbjct: 52 VAGGWVRDKLLGKDSTDIDIA---LDNMTGQNFCEKVNEYSELLGEEQKGIGVIQCNPDQ 108 Query: 88 --------------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + D LRS+ + V K D+ RRD TIN+L+ + Sbjct: 109 SKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFRRDLTINSLFFNINT 168 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG------EKNIDSD 185 V D G G+ DL+ I A L+D LR+LR RF A + K+ SD Sbjct: 169 NTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLTEDLKDAASD 228 Query: 186 GLVAS--------------IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 V S +K++ G KI S ERI E++ ++ K+P+NA+ ++ + G+F Sbjct: 229 EKVKSELGSKISKERIGHEVKSELGSKI-SKERIGHEVDLMMSDKHPVNAMCYIRDLGLF 287 Query: 232 KEIF 235 +F Sbjct: 288 YVVF 291 >gi|192361371|ref|YP_001981281.1| tRNA nucleotidyltransferase [Cellvibrio japonicus Ueda107] gi|190687536|gb|ACE85214.1| tRNA nucleotidyltransferase [Cellvibrio japonicus Ueda107] Length = 439 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 83/199 (41%), Gaps = 18/199 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGGAVRD L+ V + D M +P + K+ Sbjct: 33 KTYLVGGAVRDKLLGRPVHERDWVVIGSSPAAMEAAG-----FLPVGKDFPVFIHPQTKE 87 Query: 88 YFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + + R++ T Y F + D +RRD TINA+ D G +ID GG + Sbjct: 88 EYALA--RTERKTGHGYGGFSFYCGENVALEEDLIRRDLTINAMAEDDVGNIIDPYGGQS 145 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL+ R ++ + A ED +RILR RF A Y ++ L+ S+ Sbjct: 146 DLQQRLLRHVSPA---FAEDPVRILRVARFAARYHGLGFTLAEETLALMRSMVCNGEADH 202 Query: 200 LSSERIWSEINKLLEAKNP 218 L +ERIW E + L P Sbjct: 203 LVAERIWKETERALAEPWP 221 >gi|310779232|ref|YP_003967565.1| Polynucleotide adenylyltransferase region [Ilyobacter polytropus DSM 2926] gi|309748555|gb|ADO83217.1| Polynucleotide adenylyltransferase region [Ilyobacter polytropus DSM 2926] Length = 427 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 102/423 (24%), Positives = 185/423 (43%), Gaps = 78/423 (18%) Query: 23 NKGEDKSCIVGGAVRDSLMNLS---VQDIDIATT-ILPDRVMRIFSKTRYKVIPTSISYG 78 N GE + +VGG VRD LM + ++DID+ I D+ +I K YG Sbjct: 12 NNGE--AYLVGGWVRDRLMGATEDEIKDIDLEVMGIKRDKFEKILQK-----------YG 58 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVID 137 K + K ++I L + + K+ K + RRDFT+N++Y + + K +D Sbjct: 59 KFKKVG--KSYEIYILNNSIEISFIEVKIPI----KECARRRDFTVNSIYYNLIEDKYLD 112 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI--KAKK 195 + GG+ D++N+ + ++ + L+D LRILR +F + +G +D L+ I K+ Sbjct: 113 FFGGMEDIKNKLLSYV--DKNSFLQDPLRILRTAQFISRFG---FSADHLLEVIIKTEKE 167 Query: 196 GLKILSSERIWSEINKL-LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + + ERI E+ K+ + P + + GI + I ++ SL ++ Q ++ Sbjct: 168 EISKVPKERICRELEKIYMLGIKPSEGFLFLEKTGILQRIMPEIS--SLKEVMQ----DE 221 Query: 255 VFEWKIDSLLRFIVLISWQDKK--------SIL--SMAKKFSLP--------------RE 290 ++ + D ++++ K+ SIL KK + P RE Sbjct: 222 IYHPEGDVFTHTMMMLDVLSKEERTRELFWSILYHDAGKKETFPGFEGHCEKSHEIFDRE 281 Query: 291 IRYFLISFFNCNFNQKTLSIPE--IKKLFYLYGDKVMIAKLKI------FLALHYNNL-- 340 I F + N +K + E +K L DK+ + KL L L+ ++ Sbjct: 282 IIKFTDNRDLINNARKLVRYHEEPLKILLKGGADKISVKKLAAKVDIDKLLKLYRCDVLG 341 Query: 341 ----THQDTCFILQVLSDIIHW-KKPLFPLT-GDDVVKYGIPPGKKVGNILVHCKQEWIN 394 ++ I++ + + H K L P+ G D++K+G+ PG+ G IL + + Sbjct: 342 RGRSDNKKELEIIESIGAVYHRVKDELKPIVKGKDLIKWGLEPGENFGEILKELYEAQLE 401 Query: 395 SSF 397 F Sbjct: 402 EEF 404 >gi|224134120|ref|XP_002321741.1| predicted protein [Populus trichocarpa] gi|222868737|gb|EEF05868.1| predicted protein [Populus trichocarpa] Length = 481 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 28/238 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L K + +VGG VRD ++ + +D DI T+ V+R F P I Sbjct: 46 VLDGLKKNGYEVYLVGGCVRDLILKRTPKDFDIITSAELKEVVRTF--------PQCIIV 97 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--------------WKADSLRRDFT 123 G IC D S T G ++ + WK + LRRD T Sbjct: 98 GKRFPICHVHVGDTIVEVSSFSTTGPKFRLDLSNGISPPIDCDEKDYVRWK-NCLRRDLT 156 Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-N 181 IN L D +++ DYVGGL D++ ++ + A ED RILR R A G + Sbjct: 157 INGLMFDPYKRIVYDYVGGLEDIKKAKVRTVVPASTSFQEDCARILRAVRIAARLGFRFT 216 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++ + ++ + L L ++RI E+N +L + ++ ++ G+ E+ L Q Sbjct: 217 RETAHFIKNL--SRSLLRLDNQRIMMEMNYMLAYGSAEASLRILWKFGLL-ELLLPFQ 271 >gi|260062206|ref|YP_003195286.1| putative polyA polymerase [Robiginitalea biformata HTCC2501] gi|88783768|gb|EAR14939.1| putative polyA polymerase [Robiginitalea biformata HTCC2501] Length = 486 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 20/236 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATT----ILPDRVMR-IFSKT 66 SD LSL ++ ++GG VRD + + DIDI L +++ + K Sbjct: 19 SDTARELSL------ETYVIGGFVRDYFLGREQKKDIDIVAVGSGIALAEKLAAGLPGKP 72 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 R V ++GT + + + R + V + D RRDFTINA Sbjct: 73 RVSVF---RNFGTAMVRHGELELEFVGARKESYNRDSRKPAVEDGSLEDDQKRRDFTINA 129 Query: 127 LY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 L + G+++D GG++DL I+ +D LR++R RF A G + I Sbjct: 130 LALSLNPEDFGRLLDPFGGMDDLEAGLIRTPLAPAETYSDDPLRMIRAIRFAAQLGFR-I 188 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + D L A + L+I+S ERI E+NK+L + P + ++ G+ + I ++ Sbjct: 189 ERDSLNAIASQHERLRIVSMERIVEELNKILLTEKPSVGLGLLFKTGLLRHILPEL 244 >gi|239906839|ref|YP_002953580.1| nucleotidyltransferase [Desulfovibrio magneticus RS-1] gi|239796705|dbj|BAH75694.1| nucleotidyltransferase [Desulfovibrio magneticus RS-1] Length = 934 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 88/397 (22%), Positives = 165/397 (41%), Gaps = 73/397 (18%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT----TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L+ D+D+ + RI+ RYK P + + I+ Sbjct: 493 VVGGFVRDLLLKHPNFDVDLVVEGDGVAYAAELARIYGG-RYKSHPKFKT--AVVILPDG 549 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 + D+ T R + V K D RRDFT+NAL ++ G ++D+ G Sbjct: 550 QRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNALALHLSPERFGDLVDFFGAQ 609 Query: 143 NDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI 199 D+++R ++ + H + +ED RI+R RF +G + +D L+ + Sbjct: 610 RDIKDRVLRVL----HSLSFVEDPTRIVRAIRFSERFGFRIGGQTDRLIKNAVRHSFFHK 665 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW- 258 LS R+ E+ + E K PL+ + M + + I + ++ + + ++E E V W Sbjct: 666 LSGSRVMHELRLIFEEKTPLSCLRRMQDYKLLAAIH-PLLALTPSKEAVLLEVENVINWY 724 Query: 259 ---KIDS-----LLRFIVLISWQDKKSILSMAKKF-----------SLPREIRYFLISFF 299 I+ +L F+ L + D + +A++ +L ++IR F Sbjct: 725 RLLYIEPQPQVWMLYFLGLCTGLDPEQFAIIARRLNFSKRQAAEMVALRQQIRDTAQGIF 784 Query: 300 NCNFNQKTLSIPEIKKLFYLY------GDKVMIAK-----LKIFLALHYNNLTHQDTCFI 348 N +++ S +L++L G ++A+ L+ +++LH L H+ Sbjct: 785 NWEYHKGPPS-----ELYFLLEPMPLEGALYLMARNPREPLQKYVSLHLTTLRHKRV--- 836 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 +TG+D+ G+ G + +IL Sbjct: 837 ---------------EVTGNDLKALGVEAGPRYADIL 858 >gi|161526195|ref|YP_001581207.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia multivorans ATCC 17616] gi|189349089|ref|YP_001944717.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia multivorans ATCC 17616] gi|221199728|ref|ZP_03572771.1| multifunctional CCA protein [Burkholderia multivorans CGD2M] gi|221208667|ref|ZP_03581667.1| multifunctional CCA protein [Burkholderia multivorans CGD2] gi|221215561|ref|ZP_03588524.1| multifunctional CCA protein [Burkholderia multivorans CGD1] gi|226702043|sp|A9ABP3|CCA_BURM1 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|160343624|gb|ABX16710.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia multivorans ATCC 17616] gi|189333111|dbj|BAG42181.1| tRNA nucleotidyltransferase [Burkholderia multivorans ATCC 17616] gi|221164549|gb|EED97032.1| multifunctional CCA protein [Burkholderia multivorans CGD1] gi|221171478|gb|EEE03925.1| multifunctional CCA protein [Burkholderia multivorans CGD2] gi|221179967|gb|EEE12371.1| multifunctional CCA protein [Burkholderia multivorans CGD2M] Length = 413 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 114/270 (42%), Gaps = 37/270 (13%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMIAQGFRPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID Sbjct: 58 YALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPDGTLIGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + + DA +ED +RILR RF A + + + D L+ + + Sbjct: 118 GQRDLRARVFRHVSDA---FVEDPVRILRLARFAARFADFTVADDTLALMRRMVDAGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W E+ + L P + + G I +V D L V + + Sbjct: 175 ALVPERVWQELARGLMEAKPSRMFAVLRDCGALARILPEV-----DGLWGVPQRAD-YHP 228 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++D+ + ++++ + K +++SLP Sbjct: 229 EVDTGVHVMMVVDYAAK-------QRYSLP 251 >gi|212530828|ref|XP_002145571.1| tRNA nucleotidyltransferase [Penicillium marneffei ATCC 18224] gi|210074969|gb|EEA29056.1| tRNA nucleotidyltransferase [Penicillium marneffei ATCC 18224] Length = 534 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 38/239 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL---------------PDRVMRIFSKTRYKVIPTSIS 76 GG VRD L+ +S DID+A + + D + + + + + Sbjct: 54 TGGWVRDKLLGVSSHDIDVAISTMTGLRFGTYLQEYLEESDNLKKYMNNKEFAFTDEMLK 113 Query: 77 YGTIKIICRKKY-------------FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDF 122 TIK K D+ LR + T+ R +V F K D+LRRD Sbjct: 114 VHTIKANPEKSKHLETVTTRLFGLDIDLVNLRKETYTELSRNPQVEFG-TAKEDALRRDA 172 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 T+NAL+ + ++ D+ G GL+D+ + I+ + + +D LR+LR RF + G Sbjct: 173 TVNALFFNLNTSMLEDFTGLGLDDMERKLIRTPLEPYQTFKDDPLRVLRLIRFASRLG-Y 231 Query: 181 NIDSDGLVA----SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +ID A IK LKI S ER+ E+ K L +P + ++ + G++ IF Sbjct: 232 HIDEKTQEAMQDEDIKKAFKLKI-SKERVGIEMEKTLRGPDPRIGLKYIDDLGLYTTIF 289 >gi|188997386|ref|YP_001931637.1| Polynucleotide adenylyltransferase region [Sulfurihydrogenibium sp. YO3AOP1] gi|188932453|gb|ACD67083.1| Polynucleotide adenylyltransferase region [Sulfurihydrogenibium sp. YO3AOP1] Length = 847 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 96/390 (24%), Positives = 176/390 (45%), Gaps = 40/390 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +S I+GG VRD ++N D+DI +++ + K + + T +++ Sbjct: 461 RSFIIGGVVRDIILNRPNLDVDIIVEGDAPTLIKEYVKDKNYTFYIYNEFMTGQVVIENG 520 Query: 88 Y-FDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINAL----YADQQGKVIDYVGG 141 D +T R + + G Y KV ++ D RRDFTIN L + G +IDY Sbjct: 521 LKLDFSTARKEEYQSPGAYPKVEKATLFE-DLYRRDFTINTLAIEITSSNYGILIDYFNA 579 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLK 198 + D++ + I+ + +ED +RILR RF + EKN ++ L+ K L Sbjct: 580 IKDIKEKRIRILHSL--SFVEDPIRILRALRFAGRFNFKLEKN--TEKLLTYSVEKGLLS 635 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYN-----GGIFKEIFLDV-QEISLDQLS-QVIE 251 + RI E+N E + + I+ +Y+ IF + +D+ +EI L +L+ ++ Sbjct: 636 VAPRGRINLELNLAFEEEKAIE-ILKLYDKYKVLNKIFTQTHIDLKKEILLQKLTDNLVL 694 Query: 252 AEQVFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + F+ VL+S + I K + +E + L F +FN+ I Sbjct: 695 LQHIKPYNYSKTTNFLYVLLSHLPTELIYENLKLYHFDKEAK--LCDKFVQDFNE----I 748 Query: 311 PEIKKLFYLYG--DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 +++ +F +Y K+ + L L L + ++ I +V KKPL + G+ Sbjct: 749 LKLEDIFQIYKILKKINLEYLPAILTL-VDEDRYKKIIKIFEV------EKKPL--IKGE 799 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 D+++ G+ P K NIL ++ + F+ Sbjct: 800 DLIELGLKPSKLFKNILEDVFEKQLKEEFK 829 >gi|289667584|ref|ZP_06488659.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 410 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 116 DSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D+ G++ D G+ DL+ R ++ +G A +ED +R+LR RF Sbjct: 87 DLLRRDFTINAIARDEDTGELFDPYNGVRDLQARVLRHVGPA---FVEDPVRVLRAARFM 143 Query: 175 AHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A ++ L+ + A L L ER+W E+ + L P + +++ Sbjct: 144 ARLAPLGFTIAPETAALMREMAASGELDSLVPERVWQELRRALTCAQPSALLRTLHDTAA 203 Query: 231 FKEIFLDV 238 + I ++ Sbjct: 204 LRVILPEI 211 >gi|154148647|ref|YP_001406812.1| polyA polymerase family protein [Campylobacter hominis ATCC BAA-381] gi|153804656|gb|ABS51663.1| polyA polymerase family protein [Campylobacter hominis ATCC BAA-381] Length = 382 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 18/222 (8%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV---QDIDIAT-TILPD 57 VS ++ K F S + ++L ++ VGG+VRD + + +DIDI I P+ Sbjct: 3 VSKIELKTFQISGFKTLFNVLKNYTKRAYFVGGSVRDFFLFGGMSKPKDIDIEVYDINPE 62 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKA 115 IF K + + G + + + FDI RS+ I G A +V D + Sbjct: 63 ----IFEKIMLGIGAKGV--GKSFFVYKFENFDIALARSENKIGVGHKAFEVEVCNDERM 116 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDF+INA+ + G++ D+ GG+ D+R R ++ + +ED LR+LR +F Sbjct: 117 AVKRRDFSINAVMINIFTGEICDFYGGVADIRARVLRMV--CEKTFVEDSLRVLRGAQFC 174 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 A + K I+ + L I K L LS +RI E+ KL AK Sbjct: 175 ARFNLK-IEQNTL--KIMQKIKLDDLSKDRIRDELVKLFRAK 213 >gi|297616726|ref|YP_003701885.1| hypothetical protein Slip_0536 [Syntrophothermus lipocalidus DSM 12680] gi|297144563|gb|ADI01320.1| CBS domain containing protein [Syntrophothermus lipocalidus DSM 12680] Length = 879 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 10/216 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-F 89 +VGG VRD L+ + DID+ R ++ + T ++ + Sbjct: 482 MVGGIVRDLLLGVPNYDIDLVVEGEGLVFARALAQRLGGRARVHERFQTAVVVLPDGFKI 541 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 D+ T R++ VV + D RRDFTIN L + G++IDY GG DL Sbjct: 542 DVATARTEYYEFPAALPVVHRSSIREDLYRRDFTINTMAICLNPGRFGELIDYFGGRKDL 601 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSSE 203 + I+ + + +ED RILR RF Y + I+++ L + A ++ L LS + Sbjct: 602 KEGLIRILYNLS--FVEDPTRILRAIRFEQRY-KFQIEAETLRLARDAIDRRLLGKLSHK 658 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 RI E+ +LE K+PL A+ M G+++ + +V+ Sbjct: 659 RILHELILILEEKDPLPALRRMDEIGVWEYVMPEVR 694 >gi|238502497|ref|XP_002382482.1| tRNA nucleotidyltransferase [Aspergillus flavus NRRL3357] gi|220691292|gb|EED47640.1| tRNA nucleotidyltransferase [Aspergillus flavus NRRL3357] Length = 688 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 86/156 (55%), Gaps = 6/156 (3%) Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLR 146 D+ LR + +D R ++ F + D++RRD TINAL+ + + KV D+ G D+R Sbjct: 292 DLVNLRKETYSDDSRNPQMEFGTA-EEDAMRRDATINALFYNLNESKVEDFTRRGFQDMR 350 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI-LSSER 204 ++ I+ + + +D LR+LR RF + G + + D++ + + + LK+ +S ER Sbjct: 351 DQVIRTPMEPYQTFKDDPLRVLRLIRFASRLGYRIDEDTENAMKNKDISEALKLKISRER 410 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + +E+ K+L+ +P A+ + ++ IF + Q+ Sbjct: 411 VGTEMTKMLKGPDPRGALQFIDRLELYPTIFANHQD 446 >gi|15643478|ref|NP_228524.1| tRNA nucleotidyl transferase-related protein [Thermotoga maritima MSB8] gi|4981239|gb|AAD35797.1|AE001742_12 tRNA nucleotidyl transferase-related protein [Thermotoga maritima MSB8] Length = 863 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 24/240 (10%) Query: 12 DSDLINILSLLNKGEDKSC----IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + DIDI ++ + F++ Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDI---VVEGNALE-FAEYA 506 Query: 68 YKVIPTSI----SYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +P + + T + + DI T R + V K D RRDF Sbjct: 507 KRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDF 566 Query: 123 TINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAH 176 TINA L G +ID+ GG DL+ I+ + H + ++D RILR RF Sbjct: 567 TINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVL----HTLSFVDDPTRILRAIRFEQR 622 Query: 177 YGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + ++ + ++G L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 623 FDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF 682 >gi|289663916|ref|ZP_06485497.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 410 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 116 DSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D+ G++ D G+ DL+ R ++ +G A +ED +R+LR RF Sbjct: 87 DLLRRDFTINAIARDEDTGELFDPYNGVRDLQARVLRHVGPA---FVEDPVRVLRAARFM 143 Query: 175 AHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A ++ L+ + A L L ER+W E+ + L P + +++ Sbjct: 144 ARLAPLGFTIAPETAALMREMAASGELDSLVPERVWQELRRALTCAQPSALLRTLHDTAA 203 Query: 231 FKEIFLDV 238 + I ++ Sbjct: 204 LRVILPEI 211 >gi|229495960|ref|ZP_04389684.1| polyA polymerase family protein [Porphyromonas endodontalis ATCC 35406] gi|229317052|gb|EEN82961.1| polyA polymerase family protein [Porphyromonas endodontalis ATCC 35406] Length = 475 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 7/217 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICR 85 ++ +VGG VRD L++ + DID+ + + R F+K R + ++GT ++ Sbjct: 29 EAYVVGGYVRDLLLHRTTGDIDVVSVGRGIDLARAFAKKWGRGAHLSVFANFGTAQVKKG 88 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGG 141 + R + +V + D RRDFTINA L ++ G+++D G Sbjct: 89 GIEVEFVGARRESYRRDSRKPIVEDGTLEEDQERRDFTINAMALCLNKERFGELVDPFYG 148 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL + ++ D +D LR+LR RF + G +D + A + + ++I+S Sbjct: 149 LEDLEDCLLRTPLDPDVTFSDDPLRMLRGIRFASQLG-FFLDEETFEAIERNAERIQIVS 207 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ERI E+NK++ + P + + G+ I +V Sbjct: 208 AERIIVELNKIMLSPKPSIGLELLEKTGLMALILPEV 244 >gi|189423945|ref|YP_001951122.1| hypothetical protein Glov_0878 [Geobacter lovleyi SZ] gi|189420204|gb|ACD94602.1| CBS domain containing protein [Geobacter lovleyi SZ] Length = 880 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 74/345 (21%), Positives = 146/345 (42%), Gaps = 33/345 (9%) Query: 13 SDLINILSLLNKGEDKSCI----VGGAVRDSLMNLSVQDIDIATTILPDRV--MRIFSKT 66 +D + +L LL K D + VGG VRD L+++ D+DI T+ D + F + Sbjct: 461 ADSVQLLELLGKSGDALGVAVHAVGGFVRDLLLDVPNLDLDI--TVEGDGIFFAETFGEQ 518 Query: 67 RYKVIPTSISYGT-IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT + + + D+ + R + V + D RRDFTIN Sbjct: 519 HGCRVRPHQAFGTAVVVFPDGRKLDVASTRLEYYDSPGVLPTVERASLRHDLYRRDFTIN 578 Query: 126 ALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EK 180 L ++ G ++D+ G DL+ + ++ + + +ED R R RF G + Sbjct: 579 TLALCLNTNRFGLLLDFFGVQKDLQEKAVRVLHNLS--FVEDPTRAFRAIRFEQRLGFQL 636 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + ++GL+ S ++ + +R+ E+ ++L+ + P+ A+ M G+ I +++ Sbjct: 637 DPHTEGLLRSAVRAGLVERVGGKRLLGELIQILKEQEPVPAVKRMAQLGLLPCIHSELR- 695 Query: 241 ISLDQLSQVIEAEQVFEW----KIDSLLR-----FIVLISWQDKKSILSMAKKFSLPREI 291 D E E+V W +D+ L F+ L+ D L ++ +P + Sbjct: 696 FGPDSEQLFAELERVLAWYQLLYLDTPLEPWTVWFLALMDRLDSPRYLEACRRLMMPERL 755 Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 F + ++ ++ L + G I+ ++ LH Sbjct: 756 -------MERVFGHRHQALKRLQHLRQMLGHGQEISNSQLHAGLH 793 >gi|118594421|ref|ZP_01551768.1| tRNA nucleotidyl transferase, putative [Methylophilales bacterium HTCC2181] gi|118440199|gb|EAV46826.1| tRNA nucleotidyl transferase, putative [Methylophilales bacterium HTCC2181] Length = 378 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 119/267 (44%), Gaps = 48/267 (17%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPT----------SISYGT 79 +VGGAVRDSL+N+ +D D + P+ ++ + K K P +++ Sbjct: 5 LVGGAVRDSLLNIPFKDKDYLVVGATPEIMVNLGFKPIGKDFPVFLHPKSNEEYALARTE 64 Query: 80 IKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYADQQGKVID 137 KI K F+ YA V D K RRD TINA+ D +G ID Sbjct: 65 KKIAAGHKGFNF------------YASPDVSIEEDLK----RRDITINAIAQDSEGNYID 108 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF------FAHYGEKNIDSDGLVASI 191 G++D+ + I+ + + ED LR+LR RF F Y E + L+ + Sbjct: 109 PYDGISDIGKKIIRHVSPSFQ---EDPLRVLRVARFKAKLPSFVIYDETMM----LMKRM 161 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----QEISLDQLS 247 A ++ LSSER+ +E+ K L+ K+ + + + IF D+ ++ +L Sbjct: 162 VADGEVECLSSERVTAELMKGLDQKDAFSMLEVLDECAALPIIFPDISFKKHNRAVKKLF 221 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQD 274 + QV K LL F++ ++++D Sbjct: 222 DLANEAQVSNSK--RLLLFLLAVNFED 246 >gi|296412019|ref|XP_002835725.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629515|emb|CAZ79882.1| unnamed protein product [Tuber melanosporum] Length = 519 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 39/233 (16%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL-----------------------PDRVMRIFSKTRY 68 GG VRD L+ DID+ + P RV +I S Sbjct: 48 TGGWVRDKLLGTRSVDIDVGVNNMSGYDFATRLSEYMNANRDEPSSKPCRVSKIESNPEK 107 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINAL 127 + T K++ D LRS+ + D R + F K D+LRRD TINAL Sbjct: 108 S---KHLETATAKVLGLD--IDFVNLRSETYSGDSRIPHMEFGTPEK-DALRRDCTINAL 161 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNI 182 + + +V D+ G GL DL R I+ +D LR+LR RF + G + Sbjct: 162 FYNLHTEQVEDFTGLGLQDLTARLIRTPLPPRETFTDDPLRVLRLIRFSSRLGFTIVPEV 221 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + IKA K +S ER+ EI K+ + NP ++ ++ ++ EIF Sbjct: 222 KAAMKLPEIKASK----ISRERVGIEIEKMFKGCNPHASLSLIHELDLYNEIF 270 >gi|302342642|ref|YP_003807171.1| polynucleotide adenylyltransferase region [Desulfarculus baarsii DSM 2075] gi|301639255|gb|ADK84577.1| Polynucleotide adenylyltransferase region [Desulfarculus baarsii DSM 2075] Length = 893 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 131/299 (43%), Gaps = 25/299 (8%) Query: 15 LINILSLLNK-----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 ++ IL + K GED +VGG+VRD + DID+ R F++ R Sbjct: 475 VVTILQQMGKVGDDLGED-VYLVGGSVRDLFLRSDHLDIDVVVEGDAIEFARAFAQGRDD 533 Query: 70 V-IPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA- 126 + + T + T K++ D+ T R + VV K D RRDFTIN Sbjct: 534 LRLRTHKKFNTAKLLFDSGLTMDLATARLEYYMSPAALPVVEHSSVKLDLYRRDFTINTM 593 Query: 127 ---LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NI 182 L Q G +ID+ + D++ + I+ + + +ED R+ R RF +G + Sbjct: 594 AVRLNGRQFGLLIDFFEAMRDIKEKVIRVLHNLS--FVEDPTRVFRAIRFEQRFGFRIGK 651 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 ++ L+ + + L+ R++ E+ +LE ++ AI + + + +F +++ Sbjct: 652 LTEALIKNAIKIDAFRRLTGSRLFGELKHILEEESVTPAIERLNEFKLLR-VFHPALQLT 710 Query: 243 LDQLSQVIEAEQVFEWK----IDSLLR-----FIVLISWQDKKSILSMAKKFSLPREIR 292 QL + +AE+ W ID LR F+ L D++ + + ++ ++R Sbjct: 711 AKQLELLDQAEETLAWYRLSFIDKPLRRWLLYFLALADGLDEQQMTELCQRLGFAPKLR 769 >gi|118581706|ref|YP_902956.1| polynucleotide adenylyltransferase protein [Pelobacter propionicus DSM 2379] gi|118504416|gb|ABL00899.1| Polynucleotide adenylyltransferase region [Pelobacter propionicus DSM 2379] Length = 881 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRV--MRIFSKTRYKVIPTSISYGT-IKIICRKKY 88 VGG VRD L L V+++D+ T+ D + F++ + + + ++GT + ++ Sbjct: 485 VGGFVRDLL--LGVENLDLDLTVEGDGIFFAERFARAKGGRVRSHPAFGTAVVVLSDGSK 542 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 D+ + R + V + D RRDFTIN L +D+ G V D+ GG D Sbjct: 543 LDVASTRLEYYESPGVLPTVERSSLRHDLYRRDFTINTLAICINSDRFGMVTDFFGGQQD 602 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSE 203 ++ RT++ + + +ED R+ R RF + ++ L+ S K L + Sbjct: 603 IQQRTVRVLHNLS--FVEDPTRVFRAIRFEQRLAFRIAPHTENLIRSALRMKVLDRVGGI 660 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 R+++E+ +L + PL A+ M G+ I ++ +S + + E+ ++ W Sbjct: 661 RLFNELVLILNEQEPLGAVRRMAMLGLLPFIHPQLR-LSPETERAMTESSRLLTW 714 >gi|123374577|ref|XP_001297753.1| polyA polymerase family protein [Trichomonas vaginalis G3] gi|121878046|gb|EAX84823.1| polyA polymerase family protein [Trichomonas vaginalis G3] Length = 450 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 16/228 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDI------ATTILPDRVMRIFSKT-RYKVI--PTSISYGTIK 81 + GG VRD L++ +D D+ + + SK+ ++VI P + + Sbjct: 39 LAGGWVRDKLIDKESKDYDVTLEGCTGVEFANNLCTYLESKSIEHRVIRNPDQSKHLSSA 98 Query: 82 IIC--RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDY 138 +C + + D ++LRS+ + +V D+ RRDFTIN LY + KV D+ Sbjct: 99 KVCLFGEVWIDFSSLRSEKYKEDSRIPIVEEGTPLQDAERRDFTINTLYYNICTKKVEDF 158 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-- 196 G DL+N+ ++ D+ ED LRILR RF + + +S + +I+ + Sbjct: 159 FNGYQDLQNKILRTPKDSLVSFQEDPLRILRALRFASRFNLTYEES--IPNAIEQCRDVY 216 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 L ++ ER +EI+ L +P+ I G F+ +F +E+ LD Sbjct: 217 LHKVTPERAAAEISPALLGPDPIRYIKDSMKFGFFQIMFNRSKELELD 264 >gi|307546068|ref|YP_003898547.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Halomonas elongata DSM 2581] gi|307218092|emb|CBV43362.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Halomonas elongata DSM 2581] Length = 381 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 12/192 (6%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD+L+ V D+D + PD + + K + P + + + + Sbjct: 17 VGGAVRDALLGWPVTDVDWVVVGATPDAMQQRGFKPVGRDFPVFLHPDSHEEFALAR--- 73 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 T +S G + + D RRD TINA+ G+++D GG DL R + Sbjct: 74 -TERKSGHGYTGFEIHASPSVTLEEDLARRDLTINAMAETPSGELVDPFGGRADLEARVL 132 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSERIW 206 + + A +ED LR+LR RF A Y ++ L+ + + L +ER+W Sbjct: 133 RHVSPA---FIEDPLRVLRVARFLARYAGLGFVIAEETLTLMRRLVTSGEIAHLVAERVW 189 Query: 207 SEINKLLEAKNP 218 +E K L P Sbjct: 190 TETEKALGEPWP 201 >gi|219882626|ref|YP_002477790.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arthrobacter chlorophenolicus A6] gi|219861632|gb|ACL41973.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arthrobacter chlorophenolicus A6] Length = 557 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 26/177 (14%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLS------VQDIDIATTILPDRVMRIFSKTRYKV 70 +L L + IVGGAVRD L++L+ D+DI L +R K Sbjct: 49 QVLDSLRAAGGRPLIVGGAVRDGLLSLTQGGTVDSMDVDIEVYGLSKEEVR-------KA 101 Query: 71 IPTSI-----SYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTR---DWKADSLRRD 121 +P + S+G + FD+ R D T DG VV T ++ RRD Sbjct: 102 LPGDVNEFGQSFGVFNTSLNGQDFDVALPRQDNKTGDGHRGFVVDTDPNMPFEVAFARRD 161 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 FT+NA+ D + G+++D +GG DL ++ GD + ED LR+LR +F + Sbjct: 162 FTMNAMGWDAESGELVDPLGGRADLEAGILRHTGD---KFQEDPLRVLRGVQFAGRF 215 >gi|21241488|ref|NP_641070.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas axonopodis pv. citri str. 306] gi|73619904|sp|Q8PPG9|CCA_XANAC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|21106832|gb|AAM35606.1| tRNA nucleotidyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 410 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 116 DSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D+ G++ D G+ DL+ R ++ +G A +ED +R+LR RF Sbjct: 87 DLLRRDFTINAIARDEDTGQLFDPYNGVRDLQARVLRHVGPA---FIEDPVRVLRAARFM 143 Query: 175 AHYGEKN----IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A ++ L+ + A L L ER+W E+ + L P + +++ Sbjct: 144 ARLAPLGFSLAAETAALMRDMAAGGELDSLVPERVWQELRRALSCAQPSAFLRTLHDADA 203 Query: 231 FKEIFLDV 238 + I +V Sbjct: 204 LRVILPEV 211 >gi|269960197|ref|ZP_06174572.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi 1DA3] gi|269835004|gb|EEZ89088.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi 1DA3] Length = 406 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 20/197 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + D D + P+ + K P + T + Sbjct: 5 LVGGAVRDHLLGIDSYDKDWVVVGSTPEMMQSQGYTAVGKDFPVFLHPKTKE-------- 56 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ + Y + F ++ + D +RRD TINA+ D+ G + D GG D+ Sbjct: 57 EHALARTERKSGAGYTGFECFFDQNVTLEEDLIRRDLTINAMAMDEDGNLYDPYGGQRDI 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILS 201 + ++ + A +ED LR+LR RF AH G + L+ A+ G L L+ Sbjct: 117 DAKVLRHVSQA---FVEDPLRVLRVARFAAKLAHLGFSVAEETMLLMRGMAESGELSTLT 173 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E +K L P Sbjct: 174 PERVWQEWHKSLSTSRP 190 >gi|152990477|ref|YP_001356199.1| RNA nucleotidyltransferase [Nitratiruptor sp. SB155-2] gi|151422338|dbj|BAF69842.1| RNA nucleotidyltransferase [Nitratiruptor sp. SB155-2] Length = 392 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 16/197 (8%) Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK---II 83 D+ +VGGAVRD L+ + ++ IA L V I K ++ + G K + Sbjct: 38 DRVYMVGGAVRD-LIRIVLEKQPIAIVDLDIEVYGIKPKEFDALMLQLGAKGVGKSFFVY 96 Query: 84 CRKKYFDITTLR-SDLITDGRYAKVV-FTRDWKADSLRRDFTINALYADQ-QGKVIDYVG 140 K++ DI+ R + G A VV +D K+ S+RRDF +NAL + G+++D+ G Sbjct: 97 KYKEHIDISLPRIESKVGRGHKAFVVDLAKDEKSASIRRDFKMNALMLNIFTGELLDFWG 156 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI- 199 G+ D++++ I I DA + ED LR+LR +F A +G + I+ S K +G+ + Sbjct: 157 GVEDIKHKRISII-DA-EKFKEDSLRVLRAMQFSARFGYR-IEK----RSCKVMQGIALD 209 Query: 200 -LSSERIWSEINKLLEA 215 LS ERI+ E K+ +A Sbjct: 210 DLSHERIFWEFEKMFQA 226 >gi|283954362|ref|ZP_06371883.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 414] gi|283794161|gb|EFC32909.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 414] Length = 372 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 21/232 (9%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69 ++ DL I L ++ +VGG+VRD + L V D DI I P+ +I K Sbjct: 10 NNPDLKFIADFLKPYTKRAYLVGGSVRDLFLGLKVCDYDIELYDIKPNDFEKIMQKL--- 66 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINA- 126 + +G + + K +D+ R++ T + +V D K + RRDFTIN+ Sbjct: 67 ---GAQGFGKSFFVYKFKNYDLALARTENKTSYGHKGFEVQICNDEKLGAKRRDFTINSM 123 Query: 127 ---LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 L+ D+ +D+ GGL DL+ +++I + ED LR+LR F + + K I Sbjct: 124 MINLFNDE---FLDFYGGLKDLKAGFLRYIDKQSFQ--EDSLRVLRAVVFASRFDFK-IT 177 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S+ L ++ +K LS +RI +E+ K ++ ++ G+ KEIF Sbjct: 178 SESL--NLMQSMSIKDLSKDRINAELYKFFKSPRLDVGYRYLQELGLEKEIF 227 >gi|95930210|ref|ZP_01312948.1| Polynucleotide adenylyltransferase region [Desulfuromonas acetoxidans DSM 684] gi|95133673|gb|EAT15334.1| Polynucleotide adenylyltransferase region [Desulfuromonas acetoxidans DSM 684] Length = 422 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 26/212 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD+L+ + QDID+ T P + + FSK + + D Sbjct: 27 VVGGALRDALLGHACQDIDLITPGDPTPIAQAFSKQQSG---------------HWFWLD 71 Query: 91 ITTLRSDLI-----TDGRYAKVVFTRDWKADSLR-RDFTINALYA--DQQGKVIDYVGGL 142 L S +I T +Y F D + LR RDFTINA+ D + +D + G Sbjct: 72 QQRLYSRVIVNEGNTALQYDFAPFRADTLDEDLRLRDFTINAIACSVDDLTQWVDPLSGQ 131 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 +DL NR ++ + +D LR+L+ R A +G +ID L ++ Sbjct: 132 SDLENRLLRECSE--QSFSDDPLRMLKGLRHCAQFG-LSIDQTTWQHCQNEAPQLVHVAG 188 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 ERI E+ LL +P +A+ + G+ + + Sbjct: 189 ERIRQELAVLLAQPSPQHALHLFHQSGLAQAV 220 >gi|317503931|ref|ZP_07961939.1| polyA polymerase family protein [Prevotella salivae DSM 15606] gi|315664957|gb|EFV04616.1| polyA polymerase family protein [Prevotella salivae DSM 15606] Length = 483 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 18/248 (7%) Query: 12 DSDLINILS-----LLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 D+DL +L+ L+++ DK C +VGG VRD + DID+ +V Sbjct: 6 DADLARLLNKDIFHLISEAADKLSLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASE 65 Query: 63 FSKTRYKVIPTSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K S+ ++GT ++ + R + + V + D RR Sbjct: 66 LKSRLGKRAHLSVFRNFGTAQVKFHGMEIEFVGARKESYSHDSRKPHVEDGTLEDDQNRR 125 Query: 121 DFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL ++ G+++D G+ D+ + I+ D +D LR+LR RF Sbjct: 126 DFTINALAVCLNKERFGQLVDPFEGVYDMEDGIIRTPLDPDVTFSDDPLRMLRCIRFATQ 185 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ + A + + +KI+S ERI E+NK++ K P + +Y G+ + I Sbjct: 186 LN-FFIEDETFEALQRNAERIKIISGERIDDELNKIMLTKTPSKGFIDLYRCGLLQLIIP 244 Query: 237 DVQEISLD 244 ++ ++LD Sbjct: 245 EL--VTLD 250 >gi|260592681|ref|ZP_05858139.1| polyA polymerase family protein [Prevotella veroralis F0319] gi|260535451|gb|EEX18068.1| polyA polymerase family protein [Prevotella veroralis F0319] Length = 474 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 9/220 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY 88 +VGG VRD + DID+ +V K S+ ++GT ++ + Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIQVASELKAVLGKKAHLSVFRNFGTAQVKYKHTE 93 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLND 144 + R + + VV + D RRDFTINAL + G+++D G++D Sbjct: 94 VEFVGARRESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCLNKARFGELVDPFDGVDD 153 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L + I+ D +D LR++R RF I+ + A + + +KI+S ER Sbjct: 154 LWDGIIRTPLDPDVTFSDDPLRMMRCVRFATQLN-FFIEDETFEALERNAERIKIISGER 212 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 I E+NK++ P + +Y G+ + I ++ ++LD Sbjct: 213 IEEELNKIMMTPTPSKGFIDLYRCGLLQIILPEL--VALD 250 >gi|269792361|ref|YP_003317265.1| CBS domain containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099996|gb|ACZ18983.1| CBS domain containing protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 867 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 9/224 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-IPTSISYGTIKIICRK 86 K +VGG VRD L+ +D+D+ ++ S +V I GT++ + Sbjct: 474 KVFLVGGFVRDLLLGRPNEDVDMVCEGDAVPLLERLSSMGLQVSIHRRYGTGTVRFPDGR 533 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL---YADQQGKVIDYVGGLN 143 K D+ T R + V K D RRDF++NA+ + + G ++DY GG Sbjct: 534 K-LDLATARREFYEYPVAQPKVQMDSLKHDLYRRDFSVNAMAVSLSPRWGMLVDYFGGRG 592 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 DL ++ + + +ED RILR R G + D++ L AS L +LS Sbjct: 593 DLNRGQLRVLHNLS--FVEDPTRILRGVRLEGRLGFRMSQDTERLAASCVKGGMLSLLSG 650 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 ++ SE+ + +NP+ A+ + G + +F V +S+D L Sbjct: 651 PKLRSELELIFRERNPIWAVDRLCGLGAWDAMFPGVP-LSIDGL 693 >gi|300726837|ref|ZP_07060267.1| polyA polymerase family protein [Prevotella bryantii B14] gi|299775950|gb|EFI72530.1| polyA polymerase family protein [Prevotella bryantii B14] Length = 488 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 16/224 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD + DID+ + +++ + K + I ++GT ++ + Sbjct: 34 VVGGYVRDLFLERPSNDIDVVVVGSGIAVAEKLRQELGKKAH--ISVFKNFGTAQVKYKG 91 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGL 142 + R + + +V D RRDFTINAL ++ G+++D GL Sbjct: 92 MEVEFVGARKESYSHDSRKPIVENGTLDDDQNRRDFTINALAVCLNKERFGELVDPFDGL 151 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 D+ + I D +D LR++R RF + D S A + LKI+S+ Sbjct: 152 LDMEDGIIATPLDPDVTFSDDPLRMMRCIRFATQLNFQIEDVTYEALSRNADR-LKIISA 210 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-----FLDVQEI 241 ERI E+NK++ + +P + +++ G+ K I +DV EI Sbjct: 211 ERIADELNKIMLSPHPSVGLYYLHETGLLKLIIPELDIMDVVEI 254 >gi|225012713|ref|ZP_03703148.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacteria bacterium MS024-2A] gi|225003246|gb|EEG41221.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacteria bacterium MS024-2A] Length = 479 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 8/215 (3%) Query: 31 IVGGAVRDSLMNLS-VQDIDI-ATTILPDRVMRIFSKTR-YKVIPTSISYGTIKIICRKK 87 ++GG VRD L+N S +DIDI A D + + +K + K + +YGT + Sbjct: 32 VIGGFVRDHLLNRSHKKDIDIVALDSGIDLAIAVQNKLKGAKAVQVFKTYGTAMVHWNNT 91 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 + R + + V + D RRDFTINAL D G +ID GL Sbjct: 92 DLEFVGARKESYSKESRNPEVKPGTLEDDQNRRDFTINALAISLNKDDFGLLIDPFNGLK 151 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL ++ D +D LR+LR RF + I SD + + + + I++ E Sbjct: 152 DLEEGVLRTPLDPDITYSDDPLRMLRAIRFATQL-DFTIASDSYDSISRNAERIDIITKE 210 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 RI E+NK+L P + + G+ + I ++ Sbjct: 211 RIVEELNKILMTPKPSKGFILLEKTGLLQRILPEL 245 >gi|259483336|tpe|CBF78640.1| TPA: tRNA nucleotidyltransferase (AFU_orthologue; AFUA_2G16660) [Aspergillus nidulans FGSC A4] Length = 605 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 30/238 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIA---------TTIL------PDRVMRIFSK------TRYKV 70 GG VRD L+ + DID+A T+L P+ + + + + +K+ Sbjct: 135 TGGWVRDKLLGVESHDIDVAINNMTGYQFGTMLKEYLDIPENLDKYKGQNGEKELSLHKI 194 Query: 71 IPTSISYGTIKIICRKKY---FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++ + K + D+ LR + + + + D+LRRD TINAL Sbjct: 195 EANPEKSKHLETVTTKIFGFDVDLVNLRKEAYDENSRTPQMEFGTAEEDALRRDATINAL 254 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNI 182 + + + KV D G GL+D+R+ I+ + + +D LR+LR RF + G +K+ Sbjct: 255 FYNLNESKVEDLTGRGLDDMRDEIIRTPMEPYQTFKDDPLRVLRLIRFASRLGFRIDKDT 314 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ I A LKI S ER+ E+ K+L+ +P A+ + ++ IF + Q+ Sbjct: 315 ENAMQHGDIGAALKLKI-SRERVGIEVQKMLQGPDPRGALHIIDRLNLYPIIFANFQD 371 >gi|167037540|ref|YP_001665118.1| polynucleotide adenylyltransferase region [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115955|ref|YP_004186114.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856374|gb|ABY94782.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929046|gb|ADV79731.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 388 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 40/292 (13%) Query: 14 DLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI---------ATTILPDRVMRIF 63 DLI +L + +K + KS IVGG VRD L+ + DID+ A T+L I Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIKFAYTLLSYLKGDIV 68 Query: 64 SKTRYKVIPTSISYGTIKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 ++ S +I +I RK+Y++ RS + ++ + D RRDF Sbjct: 69 VYEAFRTATLSYDGFSIDVISARKEYYE----RSAALPTIEFSNIY------DDMARRDF 118 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHR-ILEDYLRILRFFRFFAHYG-E 179 TIN L D +GK++DY GL DL+ ++ + H + ++D RI R R+ Y E Sbjct: 119 TINTLAYDVIEGKILDYFNGLEDLKKGLVRVL---HSKSFIDDPTRIFRAIRYATRYAFE 175 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LD 237 + L+ ++ + +++LS++RI +EI +L+ I + GI K IF + Sbjct: 176 IEKKTHNLMK--ESIENIRLLSADRIRNEIFLILKEIKAKEMIDKFISYGIDKVIFDGIT 233 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289 + +LD++ +E E L RF+VL + + I + K+ + + Sbjct: 234 LNTRNLDRVDANLEVE---------LYRFLVLFYYLKESDINKIEKRLRVNK 276 >gi|167393627|ref|XP_001740657.1| poly(A) polymerase [Entamoeba dispar SAW760] gi|165895170|gb|EDR22921.1| poly(A) polymerase, putative [Entamoeba dispar SAW760] Length = 484 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 22/223 (9%) Query: 16 INILSLLNKGE---DKSC---IVGGAVRDSLMNLSVQDIDIATTILPD-----------R 58 INI +LN + + +C +VGG VRD ++ + DIDI + + + Sbjct: 19 INIFKVLNNTKQYFNLNCTVRVVGGWVRDKILKKNSHDIDITSEGISGVQFAQYVTKYLQ 78 Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 I +K T IC D + R++ D + D + Sbjct: 79 SQGINTKLLTNREQTEHLQTATATICELP-IDFGSPRAEEYKDNSRIPEIRKGSIYEDCI 137 Query: 119 RRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN L Y + G + DY G DL N+ I+ D +D LR+ R RF A Y Sbjct: 138 RRDFTINCLFYRIEDGVIEDYTSGYEDLLNKLIRTPIDPLQSFTDDPLRVFRGIRFSAKY 197 Query: 178 GEKNIDSDGLVA--SIKAKKGLKILSSERIWSEINKLLEAKNP 218 G K I+ + L A S +G+ + R E+N +L + +P Sbjct: 198 GFK-IEDNTLNAMTSPTVLRGMNKIKKSRRTPELNNILISSHP 239 >gi|53802666|ref|YP_112563.1| tRNA nucleotidyltransferase [Methylococcus capsulatus str. Bath] gi|73619800|sp|Q60CQ4|CCA_METCA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|53756427|gb|AAU90718.1| tRNA nucleotidyltransferase [Methylococcus capsulatus str. Bath] Length = 425 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 16/221 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK--IIC 84 K+ +VGGAVRD L+ L V++ D + P+ ++ + + P + T + + Sbjct: 2 KAFLVGGAVRDRLLGLPVRERDWVVVGESPETMIARGFRPVGRDFPVFLHPETHEEYALA 61 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 R + R ++ V +D + RRD TINA+ G+++D GG D Sbjct: 62 RTERKTAPGYRGFVVHAA--PDVTLEQDLE----RRDLTINAMAETPDGRLVDPFGGRRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLVASIKAKKGLKI--L 200 L R ++ + A ED +RILR RF A + + LV + + ++ L Sbjct: 116 LEARLLRHVSSA---FAEDPVRILRVARFTARLTPLGFRVAPETLVEMRRMVEAGEVDAL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ER+W+E K L P + + G K +F +++ + Sbjct: 173 VPERVWAEFAKALAEPAPSAFFRTLRDCGALKRLFPEIERL 213 >gi|281411943|ref|YP_003346022.1| Polynucleotide adenylyltransferase region [Thermotoga naphthophila RKU-10] gi|281373046|gb|ADA66608.1| Polynucleotide adenylyltransferase region [Thermotoga naphthophila RKU-10] Length = 863 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 24/240 (10%) Query: 12 DSDLINILSLLNKGEDKSC----IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + D+DI ++ + F++ Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDVDI---VVEGNALE-FAEYA 506 Query: 68 YKVIPTSI----SYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +P + + T + + DI T R + V K D RRDF Sbjct: 507 KRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDF 566 Query: 123 TINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAH 176 TINA L G +ID+ GG DL+ I+ + H + ++D RILR RF Sbjct: 567 TINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVL----HTLSFVDDPTRILRAIRFEQR 622 Query: 177 YGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + ++ + ++G L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 623 FDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF 682 >gi|291278490|ref|YP_003495325.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Deferribacter desulfuricans SSM1] gi|290753192|dbj|BAI79569.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Deferribacter desulfuricans SSM1] Length = 434 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 23/212 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY-GTIKIICRKKYFD 90 VGG VRD L+ +D+D+ + + K + + TS+ + I++I + D Sbjct: 29 VGGFVRDVLLGKKAKDVDLVPFGIDYKDFAWLLKKKLQA--TSVPFKDNIRLILKDFVID 86 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 ++ R I + D +RDFTIN L D +G +I G NDL+N+ I Sbjct: 87 VSKPRGKNIIE--------------DLQKRDFTINNLATDIKGNII---GDTNDLKNKVI 129 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 K++ + +D +RILR FRF + + +I++ + K LK ERI+ E+ Sbjct: 130 KYVYEDVFN--DDPVRILRAFRFVSQL-DFDIENKTFEKIFREKNLLKNAPFERIYDELI 186 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 KLL+ K+ A+ M + + +F + + I Sbjct: 187 KLLKGKSNFKALKLMQHSEVLFTLFPEFKNIE 218 >gi|183232594|ref|XP_652076.2| tRNA nucleotidyltransferase [Entamoeba histolytica HM-1:IMSS] gi|169801970|gb|EAL46694.2| tRNA nucleotidyltransferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 461 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 32/236 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT--IKIICRK-- 86 +VGG VRD L+ DIDI + FS+ K I + + I II + Sbjct: 28 VVGGWVRDKLLGKESHDIDITVDNMQSYQ---FSQYLQKYINENTQHNVSGIGIIHKNHS 84 Query: 87 --KYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLRRDFTINAL-YADQ 131 K+ + TLR D I D K+ + D+ RRDFTINA+ Y Sbjct: 85 AGKHLETATLRIDNIAIDICCLRASDYCDNDEEKIGTPLE---DAQRRDFTINAMFYRVN 141 Query: 132 QGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ D G GLNDL++R I+ + +D R LR RF G + + L Sbjct: 142 DDQIEDLTGCGLNDLKSRIIRTPISPKETLHDDPARALRAIRFSGKMG--FVLDEELEQE 199 Query: 191 IKAK----KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 +K K K + LS ER+ E+ ++++ P I + G FK +F D+ EI+ Sbjct: 200 MKTKYIGDKMISGLSRERLGRELIGMIQSDRPAYCIDQIRQFGYFKGLFGDLDEIT 255 >gi|330721269|gb|EGG99360.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC2047] Length = 406 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 20/200 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ + D + ++++ + K P + K Sbjct: 2 KTYLVGGAVRDELLGYPFHERDWVVVGATAEQMLEKGYQQVGKDFPV--------FLHPK 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y + + D LRRD TINA+ D+ G+++D G Sbjct: 54 SHEEYALARTERKSGKGYTGFICHSAPDVTLEEDLLRRDLTINAIAKDENGELVDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA---HYGEKNIDSD-GLVASIKAKKGLK 198 D+ NR ++ + A ED LRILR RF A H G + D L+ + Sbjct: 114 QDIENRVLRHVSAA---FAEDPLRILRVARFAARYYHLGFRIADETLALMQQMVDVGEAG 170 Query: 199 ILSSERIWSEINKLLEAKNP 218 L ER+W EI+ L + P Sbjct: 171 HLVPERVWKEIHSALTTQTP 190 >gi|281423703|ref|ZP_06254616.1| polyA polymerase family protein [Prevotella oris F0302] gi|281402255|gb|EFB33086.1| polyA polymerase family protein [Prevotella oris F0302] Length = 483 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 38/258 (14%) Query: 12 DSDLINILS-----LLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIA--------TTI 54 D+DL +L+ L+++ DK C +VGG VRD + DID+ + Sbjct: 6 DADLARLLNKDIFHLISEAADKLALECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASE 65 Query: 55 LPDRVMRIFSKTRYKVIPTS-ISYGTIKII---CRKKYFDITTLRSDLITDGRYAKVVFT 110 L +R+ R + ++ T+ + YG ++I RK+ + + R + DG Sbjct: 66 LKNRLGRRAHLSVFRNFGTAQVKYGGMEIEFVGARKESYSHDS-RKPHVEDGTL------ 118 Query: 111 RDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 + D RRDFTINAL + G+++D G+ D+ + I+ D +D LR Sbjct: 119 ---EDDQNRRDFTINALAVCLNKEHFGQLVDPFDGVYDMEDGIIRTPLDPDITFSDDPLR 175 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 ++R RF I+ + A + + +KI+S ERI E+NK++ + P + +Y Sbjct: 176 MMRCIRFATQLN-FFIEDETFEALQRNAERIKIISGERIDEELNKIMLTQTPSKGFIDLY 234 Query: 227 NGGIFKEIFLDVQEISLD 244 G+ + I ++ ++LD Sbjct: 235 RCGLLQLIIPEL--VALD 250 >gi|296136944|ref|YP_003644186.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thiomonas intermedia K12] gi|295797066|gb|ADG31856.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thiomonas intermedia K12] Length = 422 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 18/198 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +S +VGGAVRD+L+ D D + P +++ +P + + + Sbjct: 11 RSFVVGGAVRDALLGRPHGDRDWVVVGATPQQMIDA------GFLPVGRDFPVF--LHPQ 62 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKA----DSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y V + D LRRD TINA+ G +ID GG Sbjct: 63 THEEFALARTERKTAPGYRGFVVQAAPEVTLGEDLLRRDLTINAMARAADGTLIDPYGGQ 122 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+ R ++ + A ED +RILR RF A +G+ ++ + L+ + + L Sbjct: 123 RDLQARVLRHVSAA---FAEDPVRILRLARFAARFGDFSVAPETMDLMRHMVHAGEVDAL 179 Query: 201 SSERIWSEINKLLEAKNP 218 ER+W E+ + L P Sbjct: 180 VPERVWQELARGLMEPQP 197 >gi|58262928|ref|XP_568874.1| tRNA adenylyltransferase [Cryptococcus neoformans var. neoformans JEC21] gi|57223524|gb|AAW41567.1| tRNA adenylyltransferase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 504 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 30/228 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI--FSKTRYKVIPTS-------------- 74 I GG VRD L++L D+DIA +I + + K +PT Sbjct: 56 IAGGWVRDKLLSLPSSDLDIALSIPSGHSFAVAFVDFLKAKDVPTGSVGKVVANPEQSKH 115 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQG 133 + GT +I+ + D LRS+ D R +V ++ D+ RRD TINAL Y Sbjct: 116 LETGTTRIMGLE--CDFVGLRSETYADSRIPQVKPGTPFE-DASRRDLTINALFYNVHTR 172 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLV 188 +V DY GL+DL NR + +D LRI+R RF + + ++ +DS + Sbjct: 173 QVEDYTKMGLSDLENRIARTPLPPRQTFQDDPLRIVRCVRFASRFNLAIAQEVVDS---I 229 Query: 189 ASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K G L +S ERI E K+L NP +A+ +++ + IF Sbjct: 230 KQEDVKVGILSKVSKERIGIETIKMLH-NNPFHALSLIHSLDLHPYIF 276 >gi|255586471|ref|XP_002533879.1| poly(A) polymerase, putative [Ricinus communis] gi|223526180|gb|EEF28510.1| poly(A) polymerase, putative [Ricinus communis] Length = 577 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 30/229 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKK- 87 + GG VRD L+ DIDIA D ++ K R ++ T G + II R Sbjct: 98 VAGGWVRDKLLGKDCYDIDIAI----DNMLGSEFVDKVREYLLSTGEEVGGLGIIPRNPD 153 Query: 88 ---------------YFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + D LR D D R + F + D+ RRD TIN+L+ + Sbjct: 154 QSKHLETARMRLFDLWIDFVNLRCEDYTEDSRIPTMKFGTA-EEDAFRRDLTINSLFYNI 212 Query: 132 QGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDG 186 ++ + G+ DL+ I L+D LR+LR RF A +G ++ + Sbjct: 213 NTSSVEDLTERGIEDLKFGKIVTPLPPKATFLDDPLRVLRAIRFGARFGFILDEELKEAA 272 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +K KI S ERI +EI+ +L P+ A+ ++ + +F IF Sbjct: 273 ACDDVKNALAAKI-SKERIGNEIDLMLSGNQPVKAMTYIGDLTLFWIIF 320 >gi|294627669|ref|ZP_06706251.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667097|ref|ZP_06732322.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598021|gb|EFF42176.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603107|gb|EFF46533.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 410 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 19/197 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD+L++ D D + D+ +K + + + + Sbjct: 5 LVGGAVRDALLDQPAGDRDW-VVVGADQAQ--MEAQGFKPVGKDFPV----FVHPRSGEE 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGGLNDL 145 R++ + Y V D + D LRRDFTINA+ D+ G++ D G DL Sbjct: 58 YALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGQLFDPYNGARDL 117 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + R ++ +G A +ED +R+LR RF A ++ L+ + A L L Sbjct: 118 QARVLRHVGPA---FIEDPVRVLRAARFMARLAPLGFTLAPETAALMRDMAASGELDSLV 174 Query: 202 SERIWSEINKLLEAKNP 218 ER+W E+ + L P Sbjct: 175 PERVWQELRRALSCAQP 191 >gi|134108198|ref|XP_777050.1| hypothetical protein CNBB2820 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259735|gb|EAL22403.1| hypothetical protein CNBB2820 [Cryptococcus neoformans var. neoformans B-3501A] Length = 504 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 30/228 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI--FSKTRYKVIPTS-------------- 74 I GG VRD L++L D+DIA +I + + K +PT Sbjct: 56 IAGGWVRDKLLSLPSSDLDIALSIPSGHSFAVAFVDFLKAKDVPTGSVGKVVANPEQSKH 115 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 + GT +I+ + D LRS+ D R +V ++ D+ RRD TINAL+ + Sbjct: 116 LETGTTRIMGLE--CDFVGLRSETYADSRIPQVKPGTPFE-DASRRDLTINALFYNVHTR 172 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLV 188 +V DY GL+DL NR + +D LRI+R RF + + ++ +DS + Sbjct: 173 QVEDYTKMGLSDLENRIARTPLPPRQTFQDDPLRIVRCVRFASRFNLAIAQEVVDS---I 229 Query: 189 ASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K G L +S ERI E K+L NP +A+ +++ + IF Sbjct: 230 KQEDVKVGILSKVSKERIGIETIKMLH-NNPFHALSLIHSLDLHPYIF 276 >gi|327405856|ref|YP_004346694.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Fluviicola taffensis DSM 16823] gi|327321364|gb|AEA45856.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Fluviicola taffensis DSM 16823] Length = 474 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 6/196 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRK 86 ++ ++GG VRD L+ +DIDI + + K R K + ++GT + + Sbjct: 28 EAYVIGGFVRDLLLERPSKDIDIVVVGNGMELAQAAGDKLRVKRVNLFKNFGTAQFNYKD 87 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGL 142 + R + +V D RRDFTINAL D + G +ID GL Sbjct: 88 LDVEFVGARKESYQRDSRKPIVEDGTLSDDQKRRDFTINALALDLRAESFGNLIDPFNGL 147 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL ++ D + +D LR++R RF + I+ L + ++ L+I+S Sbjct: 148 ADLEKGILRTPLDPNTTYSDDPLRMMRAIRFATQL-DFQIEISSLKSILENSSRLEIISQ 206 Query: 203 ERIWSEINKLLEAKNP 218 ERI E+NK++ A+ P Sbjct: 207 ERIVDELNKIILAEKP 222 >gi|309389181|gb|ADO77061.1| Polynucleotide adenylyltransferase region [Halanaerobium praevalens DSM 2228] Length = 538 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 109/435 (25%), Positives = 197/435 (45%), Gaps = 62/435 (14%) Query: 11 HDSDLINILS------LLNKGEDKSCI------VGGAVRDSLMNLSV-QDIDIATTILPD 57 +DSDL++ L LL ++ S + VGG VRD L+N+ + +D+DI +L Sbjct: 124 YDSDLLDYLPQQRRKLLLKLAKEASLLGYNLYLVGGQVRDLLINIPLNKDLDI---LLEG 180 Query: 58 RVMRIF----SKTRYKV-IPTSISYGTIKIICRKKY---FDITTLRSDLITDGRYAKVVF 109 + + F +K Y+ S G +Y DI + R + +V Sbjct: 181 DLKKFFVHLENKYGYQYDYNNKFSTG----FLHNQYGFSIDIASCREEKYHFPGSLPLVE 236 Query: 110 TRDWKADSLRRDFTINALYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 D +D RRDFTIN L D + G + D+ G LNDL+N +K + D R +D L Sbjct: 237 KADLFSDLFRRDFTINTLVIDLNPGRSGILYDFFGALNDLKNGILKVMHDYSFR--DDPL 294 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLN--A 221 RILR R F + + S + S ++ + L+ ER+++E++ L ++K L+ A Sbjct: 295 RILRGIR-FQILKDFKLSSKTIEISQRSLRNYDYHKLAIERVFTELSYLFKSKQDLSQFA 353 Query: 222 IVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS-------LLRFIVLISWQD 274 V + + K I D E S Q S + AE++ ++ L+R ++L + Sbjct: 354 SVLLKEIPVLKLIKSDF-EFSSSQKSNFLRAEKLLAQSRENSLGVNHFLVRLMILF-YNS 411 Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK--KLFYLYGDKVMIAKLKIF 332 K+S++ +L ++I F N + SI EIK L Y + +L +F Sbjct: 412 KESLIKSWPLSTLEKKI------FVNKIWENIDFSIFEIKDPALKYRRLEFFKKEELIMF 465 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 +L++ ++ +I ++ + + P++G D++ G+ G ++ L+ + + Sbjct: 466 ASLNF------ESDYIEEIFKHLKRRETLKIPISGHDLLDLGVKQGPEIKKYLLEVRDQI 519 Query: 393 INSSFQLSQEDLHHL 407 + + +E L +L Sbjct: 520 LRHQIENREEALTYL 534 >gi|291279467|ref|YP_003496302.1| polyA polymerase family protein [Deferribacter desulfuricans SSM1] gi|290754169|dbj|BAI80546.1| polyA polymerase family protein [Deferribacter desulfuricans SSM1] Length = 879 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 14/227 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L+ I L ++ + +VGG VRD +M + DIDI + + F+K + + Sbjct: 465 LVEIGVLADQVGMNAYVVGGFVRDLIMKIENFDIDIVVEGDAVVLAKKFAKLKNAKVSVH 524 Query: 75 ISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYA 129 + T +I + D T RS+ A V K D RRDFTIN L Sbjct: 525 YKFKTAVVILPDNFRIDFATARSEYYDFPAAAPKVEDSSIKIDLYRRDFTINTIAIKLNK 584 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SD 185 + G ++DY G +D+R+R I+ + + ++D RI R RF Y N D ++ Sbjct: 585 EDFGALVDYFGAQSDIRDRKIRVLHNLS--FVDDPSRIFRAIRFAVRY---NFDIGPHTE 639 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 L+ K + + +R++ EI +L K L A+ M N GI K Sbjct: 640 RLLKHAINLKLIDRIVGQRLFLEIKYILCEKEYLKALNMMKNYGILK 686 >gi|117925236|ref|YP_865853.1| polynucleotide adenylyltransferase region [Magnetococcus sp. MC-1] gi|117608992|gb|ABK44447.1| Polynucleotide adenylyltransferase region [Magnetococcus sp. MC-1] Length = 393 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 25/198 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIP------TSISYGTIKIIC 84 VGG+VRD L+ +D D + P+++ ++ K P T Y + Sbjct: 22 VGGSVRDRLLGQRPRDQDWVVVGACPEQLQQLGYKKVGADFPVFLHPYTQEEYALAR--- 78 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 R++ L G + T + D RRD TINA+ G++ID GG+ D Sbjct: 79 RERKQGCGYL-------GFAVEAPPTVTLEQDLARRDLTINAMARTLDGQLIDPYGGVQD 131 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG----LVASIKAKKGLKIL 200 L+NRT++ + A ED LR+LR R A D L + A+ L + Sbjct: 132 LQNRTLRHVTAA---FAEDPLRVLRVARLLARLAPMGFAVDPATERLCRQLVAQGELGHV 188 Query: 201 SSERIWSEINK-LLEAKN 217 ER+W E K LLE + Sbjct: 189 CPERVWRESQKGLLEPRG 206 >gi|320591774|gb|EFX04213.1| tRNA nucleotidyltransferase [Grosmannia clavigera kw1407] Length = 539 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 39/259 (15%) Query: 15 LINILSLLNKGEDKSCI-------VGGAVRDSLMNLSVQDIDIATTILPDRV----MRIF 63 L+++ + ++ G D+ GG VRD L+ DID A + M+ F Sbjct: 49 LLDVAAFVDGGADRQGTQPLVLRWAGGWVRDRLLGRESHDIDTAIDTMTGFAFALKMQEF 108 Query: 64 -----SKTRYKVIPTSIS----------------YGTIKIICRKKYFDITTLRSDLITDG 102 + R+ + P + T++I D LR + T Sbjct: 109 CGMAANAARHGMEPRDLGSLHKVEANPDKSKHLETATVRIF--DMEVDFVNLRRETYTAE 166 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161 +V + D+LRRD T+NAL+ + G V D+ GG+ D+ R I+ Sbjct: 167 SRNPLVEFGTPEEDALRRDATVNALFYNLNCGTVEDFTGGVADMEARLIRTPLQPLQTFT 226 Query: 162 EDYLRILRFFRFFAHYGEKNID--SDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNP 218 +D LR+LR RF + + ID ++ ++A + L+ +S ER+ +E+ K+L+ +P Sbjct: 227 DDPLRVLRLVRFASRL-QFRIDPAAEAVMADPSVLQALQQKISRERVGTEVEKMLKGNHP 285 Query: 219 LNAIVHMYNGGIFKEIFLD 237 +++ + G++ IF D Sbjct: 286 RDSLQLIDRLGLYHAIFTD 304 >gi|160872708|ref|ZP_02062840.1| multifunctional CCA protein [Rickettsiella grylli] gi|159121507|gb|EDP46845.1| multifunctional CCA protein [Rickettsiella grylli] Length = 399 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 26/253 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ +++ D + P +++ + K P + T ++Y Sbjct: 5 LVGGAVRDQLLGFPIKERDYVVVGASPAEMLKQGFRLIGKDFPVFLHPQT-----HEEYA 59 Query: 90 DITTLRSDLITDGR-----YAK--VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 T R I G YA V D K RRD TINAL G++ID G Sbjct: 60 LARTERK--IGPGYKGFSCYAAPDVTLEEDLK----RRDLTINALAQTNNGEIIDPFQGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ N+ ++ + A ED +RILR RF A + ++ L+ + + + Sbjct: 114 KDIENKLLRHVSPA---FSEDPVRILRVARFMARFSSFGFRVAKETMALMKMMVSMGEVH 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W E + L +P I + + G +F ++ E+ S + ++Q+ Sbjct: 171 ALVPERVWQEFSIALTEPSPQAFIKTLEDCGALAVLFPELYELHTHDASIKVHSQQLSPP 230 Query: 259 KIDSLLRFIVLIS 271 S+L VL++ Sbjct: 231 HYLSVLEKAVLLT 243 >gi|225848944|ref|YP_002729108.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644590|gb|ACN99640.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1] Length = 845 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 187/435 (42%), Gaps = 63/435 (14%) Query: 8 KWFHDSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 K F D++++L + + +K S I+GG VRD ++ DIDI +++ + Sbjct: 436 KRFFPKDVLDLLKDIGQFSEKLGYKSFIIGGVVRDIVLGKQSLDIDIIVEGSAIDLIKRY 495 Query: 64 SKTR---YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 +K Y V P ++ G I K T + + + G Y KV ++ D RR Sbjct: 496 AKENNLTYHVYPEFMT-GNIVFPNGLKLDFATARKEEYDSPGSYPKVEKATLFE-DLYRR 553 Query: 121 DFTINALYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTIN L + GK+IDY GL D++ + I+ + +ED +RILR RF Sbjct: 554 DFTINTLAIEITYSNFGKLIDYFNGLVDIKEKRIRILHTLS--FVEDPIRILRALRFAGR 611 Query: 177 YG---EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 EK +S L+ K L + RI E+N + + L+ + M + + Sbjct: 612 LEFKLEKKTES--LLKHAVEKDLLNFAPTGRINLELNLTFKEEKVLDILKLMDKYKVLYK 669 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLL---------------RFIVLISWQDKKSI 278 +F I+LD+ E E++ D+ L VL+S ++ + Sbjct: 670 LF----GITLDK-----EKEKLLVKLQDNFLILKEILNTDFPTSSNYLYVLLSNYPQEIV 720 Query: 279 LSMAKKFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 ++ KK+ +E +Y FL +F +Q ++ I K F +K + L FL Sbjct: 721 YNLLKKYHFEKEAKYIDEFLSAFKIVKESQNKYTLYRILKSF----NKEFLPALMSFL-- 774 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 D+ ++ + K PL + G+D+++ G+ P + IL +++N Sbjct: 775 --------DSNKFKGIIDVLKKEKNPL--IKGEDLIELGLKPSPEFKTILEDIFVKYLND 824 Query: 396 SFQLSQEDLHHLLRK 410 F+ +E + ++ K Sbjct: 825 QFKNKEEAVSYIKNK 839 >gi|193215015|ref|YP_001996214.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chloroherpeton thalassium ATCC 35110] gi|193088492|gb|ACF13767.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chloroherpeton thalassium ATCC 35110] Length = 477 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 13/222 (5%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKY- 88 VGG VRDSL+ +DIDI P + +KT+ ++ + T ++ + + Sbjct: 34 VGGFVRDSLLQRKCKDIDIMVVGEPIAFAKA-AKTKLNGFGFAVFERFRTARLSLKDREM 92 Query: 89 ----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVG 140 + R + + + + D RRDFTINAL GK+ D Sbjct: 93 GEIELEFVGARKESYSPESRKPITEVGTLQDDLSRRDFTINALAVSLNQATFGKLTDLFN 152 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G NDL + ++ + +D LR++R RF + N++ + VA + + I+ Sbjct: 153 GRNDLSAQLLRTPLEPESTFSDDPLRMMRAARFASQLN-FNLEPEIFVAMQNMHRRIGIV 211 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 S ER+ E+ K++ + P + +Y G+ KEI ++ ++ Sbjct: 212 SKERVRDELFKIMASPKPSVGLDILYKTGVLKEILPELTAMA 253 >gi|332296074|ref|YP_004437997.1| CBS domain containing protein [Thermodesulfobium narugense DSM 14796] gi|332179177|gb|AEE14866.1| CBS domain containing protein [Thermodesulfobium narugense DSM 14796] Length = 867 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 15/243 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 SD+ + LSL KS +VGG VRD L+N+ D+DI ++ + +K Sbjct: 467 SDVSDKLSL------KSFLVGGCVRDLLLNIHSNDMDIVVEGDAIKLAQEVNKYINGEFF 520 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALY 128 + + T I ++ FD + R++ + ++ D D RRDF+IN +L Sbjct: 521 SYEKFRTATIKNKEIKFDFASARTEFYSCPAAKPLIEYSDLHNDMYRRDFSINTLAISLN 580 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GL 187 +D GK+ID+ GG D++ + I+ + + +ED RI+R RF G K +D L Sbjct: 581 SDSYGKMIDFFGGYEDIKLKRIRVLHPLSY--VEDPTRIIRAIRFEFQLGFKIDKADEEL 638 Query: 188 VASIKAKKGLKILSSERIWSEINKLLE-AKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQ 245 + + K ++S + + E+ + P I+ M +FK I V SLD+ Sbjct: 639 IKNAMELKLFNVISFDVLKEELKLMFSHGSCPGLIIMRMKELNVFKLIHPKVSFNFSLDR 698 Query: 246 LSQ 248 L + Sbjct: 699 LRE 701 >gi|313672930|ref|YP_004051041.1| polynucleotide adenylyltransferase region [Calditerrivibrio nitroreducens DSM 19672] gi|312939686|gb|ADR18878.1| Polynucleotide adenylyltransferase region [Calditerrivibrio nitroreducens DSM 19672] Length = 885 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 93/383 (24%), Positives = 159/383 (41%), Gaps = 29/383 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L I ++ ++ E + +VGG VRD LM D+DI I + + F++ + Sbjct: 470 LKQIGTIADELELNAYVVGGFVRDLLMKYENFDVDIVVEIDATILAKEFARRNNGRVAIH 529 Query: 75 ISYGT-IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----A 129 + T + I+ D T R++ A V K D RRDFTINA+ Sbjct: 530 DKFKTAVVILPDGNKLDFATARTEYYNMPASAPEVEISSIKNDLFRRDFTINAMAIKINE 589 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 G ++D+ GG D+ ++ I+ + + ++D R LR RF Y E ++ L+ Sbjct: 590 KTFGLLLDFYGGQRDIIDKKIRVLHNLS--FIDDPSRGLRAIRFAVRYNFEIGPHTNRLL 647 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS- 247 + + R++ E +L N L+AI M N GI K + + LD L Sbjct: 648 KNAINLNLFDKIPGNRLFLETKYILSESNYLDAIKMMTNYGIMK---FYIDKFKLDDLKL 704 Query: 248 QVIEA-EQVFEWKI--------DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 ++ E E+ W +R ++L S + +F L RE + ++ Sbjct: 705 RIFENFERYLIWHSVQCNTTVEPYFVRLLILFSDLKNNDFQKICDRFDLNRETKKRMME- 763 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKV--MIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 F + +IKK YL ++ + LK L ++ + +++ I Sbjct: 764 ---GFGKSKHIANKIKKSSYLKRSEIYYLFEGLKEEFILFTASILGDNYEELIRDYITEI 820 Query: 357 HWKKPLFPLTGDDVVKYGIPPGK 379 W KP + G+D+ K GIPP + Sbjct: 821 RWIKP--EIDGNDLKKLGIPPSQ 841 >gi|170288018|ref|YP_001738256.1| CBS domain-containing protein [Thermotoga sp. RQ2] gi|170175521|gb|ACB08573.1| CBS domain containing protein [Thermotoga sp. RQ2] Length = 863 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 24/240 (10%) Query: 12 DSDLINILSLLNKGEDKSC----IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + D+DI ++ + F++ Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDVDI---VVEGNALE-FAEYA 506 Query: 68 YKVIPTSI----SYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +P + + T + + DI T R + V K D RRDF Sbjct: 507 KRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEISTIKKDLYRRDF 566 Query: 123 TINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAH 176 TINA L G +ID+ GG DL+ I+ + H + ++D RILR RF Sbjct: 567 TINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVL----HTLSFVDDPTRILRAIRFEQR 622 Query: 177 YGEKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + ++ + ++G L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 623 FDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF 682 >gi|51243913|ref|YP_063797.1| poly(A) polymerase [Desulfotalea psychrophila LSv54] gi|50874950|emb|CAG34790.1| related to poly(A) polymerase [Desulfotalea psychrophila LSv54] Length = 882 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 99/410 (24%), Positives = 167/410 (40%), Gaps = 44/410 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 K+ VGG VRD L+ + D+DI +V F + K P + Sbjct: 481 KAFAVGGFVRDLLLKTANLDLDIVVEGNGIAFAKKVAEHF---KGKFFPHEKFLTATVTL 537 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYV 139 DI T R + ++ K D RRDF+INA+ +Q G +IDY Sbjct: 538 PNDFKIDIATARLEYYESPAAMPMIQLSSIKLDLSRRDFSINAMALQINREQFGTLIDYF 597 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID------SDGLVASIKA 193 +DLRN+ I+ + + +ED RI R RF EK ++ + GL+ + A Sbjct: 598 NSQSDLRNQVIRVLHNL--SFVEDPSRIFRAIRF-----EKRMNFHIGPHTKGLIGNAVA 650 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------SLD 244 R SE+ + + K+PL +V + G+F+ ++ D++ + Sbjct: 651 MNLFGKSRDSRFLSELKIIFKEKDPLGPLVRLAEFGLFQYLWPDLRPNYRTDRRFCHGIR 710 Query: 245 QLSQVIEA--EQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREI-RYFLISFFN 300 Q I+ E + KID + F++ I + I + +F+ +I + L + Sbjct: 711 QTKAAIKKLYEIEPKAKIDKSVAFLLTIFHRSGPEEIQAFCNRFNEEEKICKKLLQTKQR 770 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 C+ L P K + + + L ++ + H+ +L L + H K Sbjct: 771 CDALLPILYTPMAKSELHQHLQDLNYEDLLYICSVAKKSHIHKS---VLDYLCQLRHI-K 826 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 PL L G D+++ G P G K IL K+ ++ S+ D LL+K Sbjct: 827 PL--LKGKDLMEMGYPRGPKFSEILNSLKRAKMDGLVS-SRADEEELLQK 873 >gi|299141232|ref|ZP_07034369.1| polyA polymerase family protein [Prevotella oris C735] gi|298577192|gb|EFI49061.1| polyA polymerase family protein [Prevotella oris C735] Length = 483 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 38/258 (14%) Query: 12 DSDLINILS-----LLNKGEDK---SC-IVGGAVRDSLMNLSVQDIDIA--------TTI 54 D+DL +L+ L+++ DK C +VGG VRD + DID+ + Sbjct: 6 DADLARLLNKDIFHLISEAADKLALECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVASE 65 Query: 55 LPDRVMRIFSKTRYKVIPTS-ISYGTIKII---CRKKYFDITTLRSDLITDGRYAKVVFT 110 L +R+ R + ++ T+ + YG ++I RK+ + + R + DG Sbjct: 66 LKNRLGRRAHLSVFRNFGTAQVKYGGMEIEFVGARKESYSHDS-RKPHVEDGTL------ 118 Query: 111 RDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 + D RRDFTINAL + G+++D G+ D+ + I+ D +D LR Sbjct: 119 ---EDDQNRRDFTINALAVCLNKEHFGQLVDPFDGVYDMEDGIIRTPLDPDITFSDDPLR 175 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 ++R RF I+ + A + + +KI+S ERI E+NK++ + P + +Y Sbjct: 176 MMRCIRFATQLN-FFIEDETFEALQRNAERIKIISGERIDDELNKIMLTQTPSKGFIDLY 234 Query: 227 NGGIFKEIFLDVQEISLD 244 G+ + I ++ ++LD Sbjct: 235 RCGLLQLIIPEL--VTLD 250 >gi|292490381|ref|YP_003525820.1| polynucleotide adenylyltransferase region [Nitrosococcus halophilus Nc4] gi|291578976|gb|ADE13433.1| Polynucleotide adenylyltransferase region [Nitrosococcus halophilus Nc4] Length = 403 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 17/217 (7%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V++ D + P ++ + K P + T + Sbjct: 5 LVGGAVRDKLLGRPVKERDYVVVGATPASLLAQGYRPVGKDFPVFLHPQTQE-------- 56 Query: 90 DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y +V D + D RRD TINA+ +G + D GG DL Sbjct: 57 EYALARTERKTGPGYKGFEVYAAPDVTLEEDLQRRDLTINAIAESPEGALFDPFGGRQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++ + A +ED +RILR RF A + E ++ L+ ++ A + L ER Sbjct: 117 ERGILRHVSPA---FVEDPVRILRVARFAARFDFEVAPETMALMQAMVAAGEVDHLVPER 173 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +W E+ + L +P + G IF +++ + Sbjct: 174 VWKELEQALAESHPRRFFEILRACGALARIFPEIERL 210 >gi|313159501|gb|EFR58864.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Alistipes sp. HGB5] Length = 469 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 5/195 (2%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD + DID+ + + + + ++GT + + Sbjct: 21 RAFVVGGYVRDHFLRRPSTDIDVVVVGSGIALAEALGRELHAKVSVFKTFGTAMLRHKGV 80 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLN 143 + R + T V + D RRDFTINA L A G+++D G++ Sbjct: 81 EVEFVGARRESYTQDSRKPQVEAGTLEDDQRRRDFTINAMAWSLNAGSFGELVDPFDGMD 140 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL I+ D +D LR++R RF + G I+ + A + ++I+S E Sbjct: 141 DLEECVIRTPCDPDVTFSDDPLRMMRAVRFASQLG-FTIEGETFDAIRRNAHRIRIVSRE 199 Query: 204 RIWSEINKLLEAKNP 218 RI +E+NK++ + P Sbjct: 200 RIAAELNKIVLSPVP 214 >gi|28275213|ref|NP_783470.1| tRNA nucleotidyl transferase [Shewanella oneidensis MR-1] Length = 158 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 14/151 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRDSL+NL ++D D + P+++ ++ + K P + T +++Y Sbjct: 5 LVGGAVRDSLLNLPIKDKDYMVVGATPEQMQQLGYRQVGKDFPVFLHPKT-----QQEYA 59 Query: 90 DITTLRSDLITDGR---YAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 T R + G YA T + D LRRD TINA+ D++G + D G+ D++ Sbjct: 60 LARTERKVGLGYGGFSCYASPDVT--LEQDLLRRDLTINAIAKDEEGNLYDPYQGIADIK 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 R ++ + A ED LR+LR RF A + Sbjct: 118 ARQLRHVSAAFS---EDPLRVLRVARFAARF 145 >gi|218439348|ref|YP_002377677.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7424] gi|218172076|gb|ACK70809.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7424] Length = 903 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 103/410 (25%), Positives = 170/410 (41%), Gaps = 79/410 (19%) Query: 31 IVGGAVRDSLM-----NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 +VGGAVRD L+ L +QDID+ A L ++ I+ + R V Sbjct: 491 LVGGAVRDLLLAPGNQTLLLQDIDLVVDGFHRAADVGAGVELASKLREIYPQVRLSV--- 547 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T +I K DI T R++ V + D RRDFTINAL Sbjct: 548 HGEFQTAALIWHKDPELGSLMIDIATARTEFYPYPAANPQVEASSIRQDLYRRDFTINAL 607 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--- 180 + ++G+++D+ GG+ DLR+ IK + + +ED RI R RF G K Sbjct: 608 AVRLTSPKEGELLDFFGGVEDLRSHQIKVL--HANSFIEDPTRIYRAVRFAVRLGFKIEP 665 Query: 181 --------NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA---KNPLNAIVHMYNGG 229 I+S G+ ++ + + R+ +E+N +LEA K L + H+ G Sbjct: 666 LTEEYIRYAIES-GVYEKLRLENHPAPALTTRLRAELNYILEASYWKPALQLLSHL---G 721 Query: 230 IFK----------EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279 + E++ +++ +S L + V W L+R +LI+ + + Sbjct: 722 ALRPLHSQLVLTGELWWEIRCVS-RWLRYLDPDHHVSHW----LIRLEILIASLKTEERI 776 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTL--SIPEIKKL--FYLYGDKVMIAKLKIFLAL 335 +A LP++ + N + +KT+ ++P +K+ F L + I L I Sbjct: 777 KIASNLQLPKD---SIERLENLDSMEKTIKSALPNCQKVSEFVLLLRQYKIQILIIVGVR 833 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 ++ H I Q L+ W K L G+D+ G P K IL Sbjct: 834 SDKSIRH----IIWQYLT---QWSKTQALLNGNDLKAMGYKPSPKFKEIL 876 >gi|304414238|ref|ZP_07395606.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Candidatus Regiella insecticola LSR1] gi|304283452|gb|EFL91848.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Candidatus Regiella insecticola LSR1] Length = 462 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 25/221 (11%) Query: 31 IVGGAVRDSLMNLSVQDID------IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 +VGGAVRD+L+ L V + D A +L ++ + P S + Sbjct: 5 LVGGAVRDNLLKLPVTERDWVVVGATANQLLSQGYRQVGKNFPVFLHPRSQEEYALARTE 64 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYVGG 141 RK T D V D + RRD TINA+ G++ID G Sbjct: 65 RKTGSGHTGFICHAAPD-----VTLEEDLR----RRDLTINAMAWRDTHNGGELIDPYHG 115 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 D+ NR ++ + DA ED LR+LR RF A + +++ L+ ++ L Sbjct: 116 KEDIANRVLRHVSDA---FSEDPLRVLRVARFAARFASLGFTIAPETELLMTAMTDNAEL 172 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L ERIW E K L +++P +++ G +F ++ Sbjct: 173 STLMPERIWQETEKALLSQSPQIYFQVLHHCGALAVLFPEI 213 >gi|224119782|ref|XP_002318161.1| predicted protein [Populus trichocarpa] gi|222858834|gb|EEE96381.1| predicted protein [Populus trichocarpa] Length = 515 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 100/237 (42%), Gaps = 26/237 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L+ L K + +VGG VRD ++ +D DI T+ V+R FS Sbjct: 82 VLNGLKKNGYEVYLVGGCVRDLILKRIPKDFDIITSAELKEVVRTFSHCEI--------V 133 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD--------------WKADSLRRDFT 123 G IC D S T GR KV D WK + L+RDFT Sbjct: 134 GKWFPICHVHVGDTIVEVSSFSTTGRKFKVDLRNDIICPIDCDEKDYVRWK-NCLQRDFT 192 Query: 124 INALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 IN L D +++ DY+GGL D++ ++ + A ED RILR R A G + Sbjct: 193 INGLMFDPYKRIVYDYMGGLEDIKKAKVRTVIPAGISFQEDCARILRAVRIAARLGFRFT 252 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++ L+ L RI E+N +L + ++ ++ G+ E+ L +Q Sbjct: 253 RETAHFVKNLSRLLLR-LDKPRIMMEMNYMLAYGSAEASLRILWKFGLL-ELLLPIQ 307 >gi|156335502|ref|XP_001619604.1| hypothetical protein NEMVEDRAFT_v1g224026 [Nematostella vectensis] gi|156203123|gb|EDO27504.1| predicted protein [Nematostella vectensis] Length = 508 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 119/251 (47%), Gaps = 22/251 (8%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIF-S 64 +H IN + LNK E+ I+ ++ + +D+D+ L ++V + + Sbjct: 49 YHQYHPINARTGLNKNEE---ILEETIQKKKKRGTAKDVDVVAVGSGIELAEKVAELLPN 105 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K + +V T YGT + + + R + T+ V + D RRDFTI Sbjct: 106 KPKVQVFKT---YGTAMLRYKDIEVEFVGARKESYTEETRNPEVSEGTLQDDQNRRDFTI 162 Query: 125 NALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 NAL G ++D G+NDL+++ I+ + + +D LR++R RF + Sbjct: 163 NALALSLNKKDFGLLLDPFDGINDLQSKIIRTPLEPNITYSDDPLRMMRAIRFASQL--- 219 Query: 181 N--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 N I+ + L A K + LKI++ ERI E+NK++ + P + + + G+ ++I ++ Sbjct: 220 NFIIEKESLEAISKNAERLKIITRERIVEELNKIMLSTKPSVGFLLLESTGLLQQILPEL 279 Query: 239 QEISLDQLSQV 249 I+L + +V Sbjct: 280 --IALKGVEEV 288 >gi|120436629|ref|YP_862315.1| tRNA nucleotidyltransferase [Gramella forsetii KT0803] gi|117578779|emb|CAL67248.1| tRNA nucleotidyltransferase [Gramella forsetii KT0803] Length = 477 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 14/224 (6%) Query: 29 SCIVGGAVRDSLMNLS-VQDIDIATT----ILPDRVM-RIFSKTRYKVIPTSISYGTIKI 82 + ++GG VRD ++ +DIDI L +V ++ +K + +V ++GT + Sbjct: 30 AYVIGGFVRDHILERGEPKDIDIVAVGSGIELAKKVSEKLPNKPKVQVFK---NFGTAML 86 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDY 138 + R + +V + D RRDFTINAL D G ++D Sbjct: 87 RSEDMEIEFVGARKESYRKDSRKPIVEDGTLEDDQNRRDFTINALALKLNKDGFGDLLDP 146 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G +DL+ + IK D +D LR+ R RF + I+++ L A + +K Sbjct: 147 FNGYDDLKKKIIKTPLDPDITYSDDPLRMYRAIRFASQLNFM-IEAESLKAIKANNERIK 205 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 I+S ERI E+NK++ + P +Y G+ K+I ++ ++ Sbjct: 206 IISKERIVDELNKIMLSDKPSKGFALLYKTGLLKKIIPELTALA 249 >gi|281202997|gb|EFA77198.1| tRNA nucleotidyltransferase [Polysphondylium pallidum PN500] Length = 595 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 83/324 (25%), Positives = 139/324 (42%), Gaps = 45/324 (13%) Query: 20 SLLNKGEDKSC-----IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--------- 65 +LL E C + GG VRD L DIDIA L + + F+ Sbjct: 95 TLLQVVEQTKCGTVLRVAGGWVRDKLRGDHSSDIDIA---LDNMMGEAFASLVNQYLKDH 151 Query: 66 ----TRYKVIPTSISYG----TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 R VI ++ + T + + D LRS+ +D + + D+ Sbjct: 152 KQETHRIGVIQSNPAQSKHLETATVRIYDMWIDFVNLRSETYSDHSRIPEITIGTPEQDA 211 Query: 118 LRRDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRD TIN+L+ + + K+ D+ G G++DL+ ++ L+D LR+LR RF Sbjct: 212 YRRDLTINSLFYNINENKIEDFTGNGVDDLKCGIVRTPLPPQTTFLDDPLRVLRSIRFAT 271 Query: 176 --HYG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +Y + + +++K K+ S ER+ E++ +L P AI + + G+F Sbjct: 272 RLYYAIDHKLVEAASSSTVKDALASKV-SHERVGIELDGMLSGPRPDLAIHLINHFGLFD 330 Query: 233 EIFLDVQEISLDQLS-QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 IF + +++ + + Q I AE + +++RF ISW L K R + Sbjct: 331 HIFSLPEGVTIKEKNYQYIAAENIL-----NMMRF---ISWGSTTEELPTRKI----RLL 378 Query: 292 RYFLISFFNCNF-NQKTLSIPEIK 314 L F N F +K +IP I+ Sbjct: 379 SSLLQVFHNYTFTTKKNRTIPAIQ 402 >gi|107023962|ref|YP_622289.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia cenocepacia AU 1054] gi|116691049|ref|YP_836672.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia cenocepacia HI2424] gi|123371192|sp|Q1BST9|CCA_BURCA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233844|sp|A0KBA2|CCA_BURCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|105894151|gb|ABF77316.1| metal dependent phosphohydrolase [Burkholderia cenocepacia AU 1054] gi|116649138|gb|ABK09779.1| metal dependent phosphohydrolase [Burkholderia cenocepacia HI2424] Length = 413 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 35/270 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P+++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMTAQGFRAVGKDFPVFLHPQT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + + DA +ED +RILR RF A + + + + L+ + + Sbjct: 118 GQADLRARVFRHVSDA---FVEDPVRILRIARFAARFADFTVADETLALMRRMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVF 256 L ER+W EI + L+EAK P + + G I +V + + Q + + Sbjct: 175 ALVPERVWQEIARGLMEAK-PSRMFAVLRDCGALARILPEVDALWGVPQRAD-------Y 226 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 ++D+ + ++++ + K+ S+A +F+ Sbjct: 227 HPEVDTGVHVMMVVDYAAKQG-YSLAVRFA 255 >gi|332877661|ref|ZP_08445404.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684410|gb|EGJ57264.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 473 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 12/200 (6%) Query: 28 KSCIVGGAVRDSLMNLSV-QDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 +S ++GG VRD L+ + +DIDI + L ++V + + ++GT I Sbjct: 25 ESYVIGGFVRDFLLQKKLPKDIDIVSIGSGISLAEKVAEQLPNS--PKVSVFKNFGTAMI 82 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDY 138 + R + V + + D RRDFTINA L D G++ID Sbjct: 83 KADGLDIEFVGARRESYESNSRKPYVESGTLQDDQNRRDFTINAMAFSLNKDTFGELIDP 142 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL + I+ D +D LR++R RF + I+ L A K K+ L+ Sbjct: 143 FDGLGDLERKLIRTPLDPDITYSDDPLRMMRAIRFATQLNFQ-IEDTSLNAISKNKERLQ 201 Query: 199 ILSSERIWSEINKLLEAKNP 218 I+S+ERI E++K+L A P Sbjct: 202 IISNERIVDELHKILLAAKP 221 >gi|225464469|ref|XP_002266551.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296081108|emb|CBI18302.3| unnamed protein product [Vitis vinifera] Length = 519 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 26/227 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICRK-- 86 + GG VRD L+ DIDIA L D + R F + Y G I C Sbjct: 42 VAGGWVRDKLLGKECYDIDIA---LDDMLGREFCEKINDYLSCTGEEKQGIGVIQCNPDQ 98 Query: 87 -------------KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 ++ D LRS+ ++ + K D+ RRD TIN+L+ + Sbjct: 99 SKHLETARMRLFDEWIDFVNLRSEDYSENSRIPTMRFGTAKEDAYRRDLTINSLFYNINT 158 Query: 133 GKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLV 188 V D+ G G+ DL++ I L+D LR+LR RF A +G ++ + Sbjct: 159 SSVEDFTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRFGARFGFILDEELKLAAGC 218 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++A KI S ERI EI+ ++ P+ A+ ++ + +F +F Sbjct: 219 DDVRAAIADKI-SRERIGHEIDLMISGNEPVKAMTYICDLLLFSVVF 264 >gi|316940567|gb|ADU74601.1| CBS domain containing protein [Clostridium thermocellum DSM 1313] Length = 877 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 99/423 (23%), Positives = 174/423 (41%), Gaps = 73/423 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS----YGTIKIICRK 86 +VGG VRD + L V++ DI + D +M FS+ + ++ +GT ++ Sbjct: 483 VVGGFVRDLI--LGVENFDIDIVVEGDALM--FSEKLAQHYQAHLTKHDRFGTAVVVLED 538 Query: 87 KY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + D+ T R + VV K D RRDFTIN++ G ++D+ GG Sbjct: 539 DFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNKSGFGNIVDFYGG 598 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 DL+ I+ + + +ED RI R RF Y K + A + G L + Sbjct: 599 RRDLQMGLIRILYNLS--FVEDPTRIFRAIRFEQRYDFKMEEKTEEFAIKAIESGILGKV 656 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------QEISLDQLSQ 248 S ERI E +L+ N + M + I K ++ +V E +L L + Sbjct: 657 SHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLLKNAEENLACLKE 716 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN------ 302 + ++ + +LL ++L S + + +++K L +E + ++ F Sbjct: 717 KVSVQESLDR---TLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFIEAKDIILSN 773 Query: 303 ------------FNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 +N+ K LS+ + L L +K I ++ L+ NNL + TC Sbjct: 774 LSGNIDISNYDVYNELKELSMEILFVLCMLSNEKKFIDRV----ILYINNLKNIKTC--- 826 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +TG D+ + G+ PG + +L E +N + Q ++L L+ Sbjct: 827 ---------------VTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDEL-EFLK 870 Query: 410 KLI 412 K+I Sbjct: 871 KII 873 >gi|187251643|ref|YP_001876125.1| metal dependent phosphohydrolase [Elusimicrobium minutum Pei191] gi|186971803|gb|ACC98788.1| Metal-dependent phosphohydrolase [Elusimicrobium minutum Pei191] Length = 500 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 51/250 (20%) Query: 17 NILSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS- 74 NI +L + ++SC VGG +RDS++ D+DIA LP ++ ++ T K + + Sbjct: 3 NIAKILKETLPEQSCYVGGCLRDSILKRPSGDVDIA---LPKENIKKYALTLAKKLSATA 59 Query: 75 ----ISYGTIKIICRKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +G ++I +K D+T + +D K D RRDFTINAL Sbjct: 60 FEMDAKFGVWRLITKKGNLQIDLTAFQG--------------KDLKQDLQRRDFTINALA 105 Query: 129 AD-----------------------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 + ++ID + D++N+T+K + + ED L Sbjct: 106 YPVSAQPEIKLLTETSKTFVRITKLKNKEIIDLATSVKDIKNKTVKMSNNKVFK--EDPL 163 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 R LR FR G K ID L K K + + ERI E+ ++ N + M Sbjct: 164 RSLRAFRTATELGFK-IDKKTLEQIKKDAKQINKSAGERIREELVRIFNQNNTKKHLEDM 222 Query: 226 YNGGIFKEIF 235 G+ +F Sbjct: 223 DRCGLLTALF 232 >gi|212543517|ref|XP_002151913.1| poly(A) polymerase, putative [Penicillium marneffei ATCC 18224] gi|210066820|gb|EEA20913.1| poly(A) polymerase, putative [Penicillium marneffei ATCC 18224] Length = 607 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 14/175 (8%) Query: 109 FTRDWKADSLRRDFTINALY--ADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYL 165 F + D+ RRD T+NA++ D Q +V DY GL DL + ++ DA +D L Sbjct: 214 FGSSAEEDAYRRDATVNAIFYNLDTQ-RVEDYTTKGLQDLEAKVLRTPLDARVTFTDDPL 272 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKK-----GLKILSSERIWSEINKLLEAKNPLN 220 RILRF R + G ID ++K+ + G +I S ERI E+ K++ +P+ Sbjct: 273 RILRFVRLASTLG-FTIDEGDTQQAMKSPEIQSLIGTRI-SPERIGLELKKMVTGPDPVT 330 Query: 221 AIVHMYNGGIFKEIFLDVQEIS-LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 A++ ++ ++K +FL Q+ LD+L++ +E+ W D ++ ++W D Sbjct: 331 ALLWIHRLKLYKHVFLGEQQKGVLDRLAESKASEKKG-WASDK-EEYVWPLAWPD 383 >gi|206558959|ref|YP_002229719.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia cenocepacia J2315] gi|226702042|sp|B4E8K1|CCA_BURCJ RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|198034996|emb|CAR50868.1| tRNA nucleotidyltransferase [Burkholderia cenocepacia J2315] Length = 413 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 31/268 (11%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P+++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMTAQGFRPVGKDFPVFLHPQT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGTLVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + + DA +ED +RILR RF A + + + + L+ + + Sbjct: 118 GQADLRARVFRHVSDA---FVEDPVRILRIARFAARFADFTVADETLALMRRMVDAGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W EI + L P + + G I +V D L V + + Sbjct: 175 ALVPERVWQEIARGLMEAKPSRMFAVLRDCGALARILPEV-----DALWGVPQRAD-YHP 228 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFS 286 ++D+ + ++++ + K+ S+A +F+ Sbjct: 229 EVDTGVHVMMVVDYAAKQG-YSLAVRFA 255 >gi|254410186|ref|ZP_05023966.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Microcoleus chthonoplastes PCC 7420] gi|196183222|gb|EDX78206.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Microcoleus chthonoplastes PCC 7420] Length = 413 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 73/334 (21%), Positives = 141/334 (42%), Gaps = 35/334 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKV--IPTSISYGTIKII 83 ++C+VGGAVRD+L+ +D+ ++P +++ K + YK + + +++ Sbjct: 23 QACLVGGAVRDALLRRQADYLDL-DFVVPHEAVKVARKLASHYKAGFVVLDEARQIARVV 81 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGL 142 DI + + + D RRDFTINA+ Y Q ++ID + G+ Sbjct: 82 FDTATVDIAQQEGETL--------------ETDLYRRDFTINAIAYNPQTQQIIDPLQGV 127 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 D R I+ + A+ + +D LR+LR +R A G I+S + L +++ Sbjct: 128 ADCRAGIIRMVSPAN--LQDDPLRLLRAYRQAAQLG-FTIESTTQSTIRQLAPLLANIAA 184 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+ E+N LL++ + + + F D + + Q++ A V + Sbjct: 185 ERVQVELNYLLQSPQGTPWLTAAWQDQLLHHWFPDTKADNFTQIAATDNAASVLAQTWQT 244 Query: 263 LLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L + S LS+AK + LP E+ +++ EI+ + Sbjct: 245 LASQLKTPVSGKSLSWLSLAKLTNVLPSEVEPAQAKLLQLKYSRA-----EIRAVL---- 295 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 +MI L L+ + ++ ++ F Q + + Sbjct: 296 --IMIQYLPQLLSHVTSPMSLREQYFFFQAVGSV 327 >gi|301062567|ref|ZP_07203205.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [delta proteobacterium NaphS2] gi|300443332|gb|EFK07459.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [delta proteobacterium NaphS2] Length = 430 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 20/248 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-F 89 +VGG VRD + D+DI + R F+K+ + + +GT +I + Sbjct: 30 LVGGLVRDIFLKFDNLDVDIVIEGNGIKFAREFAKSHPVRVRSHQKFGTAVLIFPDGFKV 89 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDL 145 D+ T R + +V T K D RRDFT+N L G +IDY G D+ Sbjct: 90 DVATARIEYYKSPGAPPIVETSSLKLDLYRRDFTMNTLAISLSKRSFGTLIDYFGAQKDI 149 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 +++ ++ + + +ED R+LR RF +G + GL+ + +S R Sbjct: 150 KDKALRVLHNLS--FVEDPTRMLRAIRFEQRFGFTIGKLTLGLMKTAAKMDWTDSRASRR 207 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFK----EIFL-DVQEISLDQLSQVIE-------A 252 + E+ +L+ N ++A+V + + K + L D +I L+++++VI Sbjct: 208 MLGELKLILKEPNRISALVRLKEFDLLKFASPALHLNDTVKILLEEINEVIAWYHLLFLE 267 Query: 253 EQVFEWKI 260 E + EWK+ Sbjct: 268 EPIAEWKV 275 >gi|156973178|ref|YP_001444085.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio harveyi ATCC BAA-1116] gi|166233890|sp|A7MWN9|CCA_VIBHB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|156524772|gb|ABU69858.1| hypothetical protein VIBHAR_00858 [Vibrio harveyi ATCC BAA-1116] Length = 406 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 12/193 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + + D D + P+ ++ K P + T + + Sbjct: 5 LVGGAVRDHLLGIDIYDRDWVVVGATPEIMLSQGYTAVGKDFPVFLHPKTKE----EHAL 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 T +S G + + D +RRD TINA+ D+ G + D GG D+ + Sbjct: 61 ARTERKSGAGYTGFECFFDQSVTLEEDLIRRDLTINAMAMDEDGNLYDPYGGQKDIDAKV 120 Query: 150 IKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKG-LKILSSERI 205 ++ + A +ED LR+LR RF AH G + + A+ G L L+ ER+ Sbjct: 121 LRHVSQA---FVEDPLRVLRVARFAAKLAHLGFSVAEETMQLMRDMAESGELSTLTPERV 177 Query: 206 WSEINKLLEAKNP 218 W E +K L P Sbjct: 178 WQEWHKSLSTSRP 190 >gi|323348859|gb|EGA83097.1| Cca1p [Saccharomyces cerevisiae Lalvin QA23] Length = 537 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 38/222 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSI------ 75 I GG VRD L+ D+DIA T L + + + ++K Y P +I Sbjct: 56 ITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAK--YGAKPHNIHKIDKN 113 Query: 76 -------SYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 T K+ + D LRS+ + R KV F + D+LRRD T+NAL Sbjct: 114 PEKSKHLETATTKLFGVE--VDFVNLRSEKYXELSRIPKVCFGTP-EEDALRRDATLNAL 170 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 + + +G+V D+ GL DL++ ++ A L+D LR+LR RF + + N D Sbjct: 171 FYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRF---NFTID 227 Query: 186 GLVASIKAKKGLKI-----LSSERIWSEINKLLEAKNPLNAI 222 V + + + +S ER+ E+ K+L PL A+ Sbjct: 228 PEVMAEMGDPQINVAFNSKISRERVGVEMEKILVGPTPLLAL 269 >gi|124804037|ref|XP_001347883.1| tRNA nucleotidyltransferase, putative [Plasmodium falciparum 3D7] gi|23496136|gb|AAN35796.1| tRNA nucleotidyltransferase, putative [Plasmodium falciparum 3D7] Length = 791 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 23/227 (10%) Query: 12 DSDLINILSLLNKGEDKSC---IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 + +L L +N+ + +C +VGG VRD +N++ DIDI + + K Sbjct: 181 EENLFEFLKSVNERYNLNCTLRVVGGWVRDKFLNINNDDIDITVDNMKGAEFCNYIKEYI 240 Query: 69 KVIPT-SISYGTIKIICRKK-------------YFDITTLRSDLITDGRYAKVVFTRDWK 114 K + ++G IKI + DI LR++ T+ + + Sbjct: 241 KEKENKNFNFGIIKINSDQSKHLETSSFNLFNFQVDIVNLRNEKYTEESRIPEIVIGTPE 300 Query: 115 ADSLRRDFTINALYAD-QQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+LRRDFT+N+L+ + + KV DY G+ L+N I + L+D LRI+R R Sbjct: 301 EDALRRDFTVNSLFYNLKNKKVEDYTEKGIFHLKNHIISTPLEPLATFLDDPLRIVRCIR 360 Query: 173 ---FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 FF + EK+I + IK K K +S R+ SEI K+ AK Sbjct: 361 FCGFFNFFLEKSIFNVLKNEDIK-KAFTKKISKSRLSSEIVKIFSAK 406 >gi|240947943|ref|ZP_04752370.1| putative poly(A) polymerase [Actinobacillus minor NM305] gi|240297737|gb|EER48196.1| putative poly(A) polymerase [Actinobacillus minor NM305] Length = 399 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 101/208 (48%), Gaps = 16/208 (7%) Query: 40 LMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS--D 97 L+ + +D DI+T P+ V +IF + V + I+ ++ +++ T R+ + Sbjct: 2 LLGKNPKDFDISTNARPEEVQKIFGRQCRLV---GRRFRLAHIVFGREIYEVATFRAGHE 58 Query: 98 LITDGRYAKV----VFTRD-----WKADSLRRDFTINALYADQQGKVI-DYVGGLNDLRN 147 T+ + +K+ + RD + D+ RRDF++NA Y D + +I D+ GL DL Sbjct: 59 NHTNDKISKISDAGMLLRDNVYGTMREDAERRDFSVNAFYYDPRHNLIYDFFNGLEDLNA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ +G+ R ED +R+LR RF A + +D + LK++ + R++ Sbjct: 119 GKLRLLGNPVQRYQEDPVRMLRAIRFMAKL-DMFLDRATADPIKEMAPLLKMIPAARLFD 177 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E KLL++ L + +F+ +F Sbjct: 178 ESLKLLQSGAGLKTYQLLREYHLFEPLF 205 >gi|261415916|ref|YP_003249599.1| Polynucleotide adenylyltransferase region [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372372|gb|ACX75117.1| Polynucleotide adenylyltransferase region [Fibrobacter succinogenes subsp. succinogenes S85] Length = 426 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 111/213 (52%), Gaps = 18/213 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK-TRYKVIP 72 L++I + + ++ +VGG VRD+L+ + +D D+ ++ D ++ I K R ++ Sbjct: 20 LLSIAGEIREAGGRAFLVGGWVRDALLGKNCRDYDVEVYDLVQDELVPILKKYGRTNLV- 78 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRD---WKADSLRRDFTINALY 128 ++G I + + D + R++ + G VV T + +K +LRRDFTINA+ Sbjct: 79 -GKAFGVIHLAMKGLSLDFSFPRTESKVGYGHRGFVVHTDEKLSFKEAALRRDFTINAMG 137 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDG 186 + + + D GG++DL+ ++ +G A +ED LRILR +F + + K ++ Sbjct: 138 MELPELTLCDPYGGIDDLKKGLLRHVGPA---FVEDSLRILRGVQFASRFALKLAPETIE 194 Query: 187 LVASIKAKKGLKILSSERIWSEINK-LLEAKNP 218 L ++ L+ LS ER++ E K LL+ P Sbjct: 195 LCRTLS----LEDLSIERLFEEFKKWLLKPGKP 223 >gi|241765925|ref|ZP_04763854.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] gi|241364122|gb|EER59337.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] Length = 413 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 123/279 (44%), Gaps = 39/279 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V D D + P++++ + + P + T R++Y Sbjct: 5 MVGGAVRDRLLGRPVNDHDWVVVGATPEQMLALGYLPVGRDFPVFLHPET-----REEYA 59 Query: 90 DITTLRSDLITDGR-YAKVVFTRD----WKADSLRRDFTINALY--ADQQGK--VIDYVG 140 T R GR Y V + D RRD TINA+ AD G + D G Sbjct: 60 LARTERKS----GRGYRGFVVQSSPDVTLEEDLSRRDLTINAIASSADASGATGLFDPYG 115 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G D+ R ++ + DA H +D +RILR RF A + + ++ + L+ S+ A Sbjct: 116 GARDIAARVLRHVTDAFH---DDPVRILRVARFAARFTDFSVAPETLALMRSMVAHGEAD 172 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L +ER+W E+ + L + P + G K + +V D+L V + + + Sbjct: 173 HLVAERVWQELARGLMEEKPSRMFEVLRACGALKVVLPEV-----DRLWGVPQRAE-YHP 226 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 ++D+ + ++ +L MA + P +R+ ++ Sbjct: 227 EVDTGVHLMM---------VLDMAARLQAPLTVRFACLT 256 >gi|317038811|ref|XP_001402226.2| poly(A) polymerase [Aspergillus niger CBS 513.88] Length = 563 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 8/158 (5%) Query: 89 FDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVG-GLNDL 145 D+ LR + + D R ++ F + D++RRD TINAL+ + ++ D+ G GL D+ Sbjct: 170 IDLVNLRKETYSEDSRNPQMEFGTA-QEDAMRRDATINALFYNLNESIVEDFTGRGLEDM 228 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKI-LSS 202 + I+ + + +D LR+LR RF + G NI+ + A + LK+ +S Sbjct: 229 KKEIIRTPMEPYQTFQDDPLRVLRLIRFASRLG-YNIERETQEAMRNELIGEALKLKISR 287 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ER+ EI K+L+ +P A+ + + G++ IF + Q+ Sbjct: 288 ERVGKEIEKMLQGPDPRGALQFIDSLGLYPTIFANHQD 325 >gi|317153261|ref|YP_004121309.1| polynucleotide adenylyltransferase region [Desulfovibrio aespoeensis Aspo-2] gi|316943512|gb|ADU62563.1| Polynucleotide adenylyltransferase region [Desulfovibrio aespoeensis Aspo-2] Length = 901 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 16/236 (6%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG VRD L+ D+D+ R ++ + + + T +I + D+ Sbjct: 499 VGGFVRDILLARPNFDLDLVVEGDAIAYARRLARQLGGRVKAHVKFKTAVVILDDQRVDV 558 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDLRN 147 T R + V K D RRDFTINAL + G+++D+ G D++N Sbjct: 559 ATARLEYYEYPAALPTVELSSIKMDLYRRDFTINALALRINPGRFGQLVDFFGAEQDMKN 618 Query: 148 RTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI---LSS 202 + I+ + H + +ED RILR RF + E I L IK L + LS Sbjct: 619 KAIRVL----HSLSFVEDPTRILRAIRFERRF-EFQIGGQTL-RLIKNALSLDLFSKLSG 672 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 RI E+ ++ +NPL + M GI + I + ++S D++ ++E +V W Sbjct: 673 TRIMHELQLIMAEENPLACLNRMQELGIMEAIH-PLLKLSADRVQVLMELGKVNNW 727 >gi|302325873|gb|ADL25074.1| polyA polymerase family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 411 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 111/213 (52%), Gaps = 18/213 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSK-TRYKVIP 72 L++I + + ++ +VGG VRD+L+ + +D D+ ++ D ++ I K R ++ Sbjct: 5 LLSIAGEIREAGGRAFLVGGWVRDALLGKNCRDYDVEVYDLVQDELVPILKKYGRTNLV- 63 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRD---WKADSLRRDFTINALY 128 ++G I + + D + R++ + G VV T + +K +LRRDFTINA+ Sbjct: 64 -GKAFGVIHLAMKGLSLDFSFPRTESKVGYGHRGFVVHTDEKLSFKEAALRRDFTINAMG 122 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDG 186 + + + D GG++DL+ ++ +G A +ED LRILR +F + + K ++ Sbjct: 123 MELPELTLCDPYGGIDDLKKGLLRHVGPA---FVEDSLRILRGVQFASRFALKLAPETIE 179 Query: 187 LVASIKAKKGLKILSSERIWSEINK-LLEAKNP 218 L ++ L+ LS ER++ E K LL+ P Sbjct: 180 LCRTLS----LEDLSIERLFEEFKKWLLKPGKP 208 >gi|259146097|emb|CAY79357.1| Cca1p [Saccharomyces cerevisiae EC1118] Length = 546 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 38/222 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSI------ 75 I GG VRD L+ D+DIA T L + + + ++K Y P +I Sbjct: 65 ITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAK--YGAKPHNIHKIDKN 122 Query: 76 -------SYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINAL 127 T K+ + D LRS+ I R KV F + D+LRRD T+NAL Sbjct: 123 PEKSKHLETATTKLFGVE--VDFVNLRSEKYIELSRIPKVCFGTP-EEDALRRDATLNAL 179 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 + + +G+V D+ GL DL++ ++ A L+D LR+LR RF + + N D Sbjct: 180 FYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRF---NFTID 236 Query: 186 GLVASIKAKKGLKI-----LSSERIWSEINKLLEAKNPLNAI 222 V + + + +S ER+ E+ K+L PL A+ Sbjct: 237 PEVMAEMGDPQINVAFNSKISRERVGVEMEKILVGPTPLLAL 278 >gi|134074841|emb|CAK38955.1| unnamed protein product [Aspergillus niger] Length = 530 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVG-GLNDLR 146 D+ LR + + D R ++ F + D++RRD TINAL+ + ++ D+ G GL D++ Sbjct: 138 DLVNLRKETYSEDSRNPQMEFGTA-QEDAMRRDATINALFYNLNESIVEDFTGRGLEDMK 196 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKI-LSSE 203 I+ + + +D LR+LR RF + G NI+ + A + LK+ +S E Sbjct: 197 KEIIRTPMEPYQTFQDDPLRVLRLIRFASRLG-YNIERETQEAMRNELIGEALKLKISRE 255 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 R+ EI K+L+ +P A+ + + G++ IF + Q+ Sbjct: 256 RVGKEIEKMLQGPDPRGALQFIDSLGLYPTIFANHQD 292 >gi|281417401|ref|ZP_06248421.1| CBS domain containing protein [Clostridium thermocellum JW20] gi|281408803|gb|EFB39061.1| CBS domain containing protein [Clostridium thermocellum JW20] Length = 877 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 99/423 (23%), Positives = 174/423 (41%), Gaps = 73/423 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS----YGTIKIICRK 86 +VGG VRD + L V++ DI + D +M FS+ + ++ +GT ++ Sbjct: 483 VVGGFVRDLI--LGVENFDIDIVVEGDALM--FSEKLAQHYQAHLTKHDRFGTAVVVLED 538 Query: 87 KY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + D+ T R + VV K D RRDFTIN++ G ++D+ GG Sbjct: 539 DFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNKSGFGNIVDFYGG 598 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 DL+ I+ + + +ED RI R RF Y K + A + G L + Sbjct: 599 RRDLQMGLIRIL--YNLSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFAIKAIESGILGKV 656 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------QEISLDQLSQ 248 S ERI E +L+ N + M + I K ++ +V E +L L + Sbjct: 657 SHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLLKNAEENLACLKE 716 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN------ 302 + ++ + +LL ++L S + + +++K L +E + ++ F Sbjct: 717 KVSVQESLDR---TLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFIEAKDIILSN 773 Query: 303 ------------FNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 +N+ K LS+ + L L +K I ++ L+ NNL + TC Sbjct: 774 LSGNIDISNYDVYNELKGLSMEILFVLCMLSNEKKFIDRV----ILYINNLKNIKTC--- 826 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +TG D+ + G+ PG + +L E +N + Q ++L L+ Sbjct: 827 ---------------VTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDEL-EFLK 870 Query: 410 KLI 412 K+I Sbjct: 871 KII 873 >gi|300692904|ref|YP_003753899.1| tRNA nucleotidyl transferase [Ralstonia solanacearum PSI07] gi|299079964|emb|CBJ52641.1| tRNA nucleotidyl transferase [Ralstonia solanacearum PSI07] Length = 429 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P+ + +T K P + + + Sbjct: 25 VGGAIRDTLLGLPVQDRDYVVVGATPEAMEAHGFRTVGKDFPV--------FLHPRTQAE 76 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALY---ADQQ---GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ A+ G VID G Sbjct: 77 YALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAENGALVGPVIDPYG 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL +RT + + +A ED +RILR RF A + + ++ + L+ + + Sbjct: 137 GQADLASRTFRHVSEA---FAEDPVRILRVARFAARFADFHVAPGTHALMQRMVEAGEVD 193 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E + L+EA+ Sbjct: 194 ALVPERVWQEFARGLMEAR 212 >gi|242786904|ref|XP_002480896.1| poly(A) polymerase, putative [Talaromyces stipitatus ATCC 10500] gi|218721043|gb|EED20462.1| poly(A) polymerase, putative [Talaromyces stipitatus ATCC 10500] Length = 581 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 85/145 (58%), Gaps = 9/145 (6%) Query: 116 DSLRRDFTINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRD T+N+++ + + I DY GL+DL+ + ++ DA +D LRILRF R Sbjct: 191 DAKRRDATVNSIFYNLDSQEIEDYTANGLSDLKAKVLRTPLDARKTFTDDPLRILRFVRL 250 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSS----ERIWSEINKLLEAKNPLNAIVHMYNGG 229 + G ID +G +I+ + ++S+ ERI E+ K++ +P+ A++ ++ G Sbjct: 251 ASTLG-FTID-EGTETTIRDSEIQCLISTRTSPERIGLELKKMITGPDPVTALMWIHRLG 308 Query: 230 IFKEIFLDVQ-EISLDQLSQVIEAE 253 ++K++FL Q + LD++++ E+E Sbjct: 309 LYKQVFLCGQSQKVLDKVAESEESE 333 >gi|172039120|ref|YP_001805621.1| poly(A) polymerase/tRNA nucleotidyltransferase family protein [Cyanothece sp. ATCC 51142] gi|171700574|gb|ACB53555.1| poly(A) polymerase/tRNA nucleotidyltransferase family protein [Cyanothece sp. ATCC 51142] Length = 905 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 104/437 (23%), Positives = 183/437 (41%), Gaps = 80/437 (18%) Query: 31 IVGGAVRDSLMNLS-----VQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 IVGGAVRD L+ + +QDID+ A L + + +S R V Sbjct: 490 IVGGAVRDLLLTRNYEKVLLQDIDLVVDGFHRSADVGAGVELASTIQKKYSNCRLSV--- 546 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T ++ K + DI T R++ V + D RRDFTINAL Sbjct: 547 HGEFQTAALLWHKDPEFGSLWLDIATSRTEFYPYPAANPEVEASSIRQDLYRRDFTINAL 606 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH------- 176 ++G+++D+ GGL DL+ + ++ + + +ED RI R RF Sbjct: 607 AVRLTPPREGELLDFFGGLLDLKAKEVRVL--HANSFIEDPTRIYRAVRFAVRLKFEIEP 664 Query: 177 ----YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK---------NPLNAIV 223 Y I+S G+ ++ K + + R+ +E+ +LEA + L+A+ Sbjct: 665 QTEAYIRYAIES-GIYEKLRLKNHVAPALTTRLKAELKYILEANYWKPALQLLSELDALK 723 Query: 224 HMYNG-GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282 ++N + +I+ ++ S L + ++ W L+R +LIS + K +A Sbjct: 724 CLHNQVSLDDKIWWQIRCAS-RWLKYLDPDNKIGHW----LIRLEILISQINIKERKQLA 778 Query: 283 KKFSLPRE------IRYFLISFFNCNFNQKTLSIPEIKKLF-YLYGDKVMIAKLKIFLAL 335 + LP+E I L S N + + + K+L+ Y D +++A Sbjct: 779 QNLQLPKESLERIEIVNTLSSEIQENLKKYDKTSEKYKQLYRYKLPDLMLVAV------- 831 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 N + I Q L+ W K PL G+D+ + G PG K +L ++ Sbjct: 832 ---NCNKKIRRIIWQYLT---QWSKVESPLNGNDLKRMGYKPGPKYKMVLDRLLSLTLDG 885 Query: 396 SFQLSQEDLHHLLRKLI 412 Q S+E+ ++R+++ Sbjct: 886 EIQ-SKEEAEIIVREMM 901 >gi|258405470|ref|YP_003198212.1| cyclic nucleotide-binding protein [Desulfohalobium retbaense DSM 5692] gi|257797697|gb|ACV68634.1| cyclic nucleotide-binding protein [Desulfohalobium retbaense DSM 5692] Length = 902 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 74/318 (23%), Positives = 137/318 (43%), Gaps = 45/318 (14%) Query: 10 FHDSDLINILSLLNKGEDKS-------CIVGGAVRDSLMNLSVQDIDI---------ATT 53 H+S ++++L + D + VGG VRD L++ D+D+ A Sbjct: 470 LHNSLPQEVVAMLTQAGDLARDLGYHVYAVGGFVRDILLHRRNLDVDLVVEGDGIYFARR 529 Query: 54 ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW 113 + D R+ + ++K + I+ + D+ T R + V Sbjct: 530 LALDLGGRVRAHKKFKT--------AVIILPDGQRIDVATARLEYYEHPAALPTVELSTV 581 Query: 114 KADSLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 K D RRDFT+NAL +Q G+++D+ GG D++ +TI+ + +ED RILR Sbjct: 582 KMDLSRRDFTVNALAVQLDPEQFGRLVDFFGGQKDIKEKTIRVMHSLS--FVEDPTRILR 639 Query: 170 FFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 RF + + ++ L+ + + + LS R++ E+ +L PL + + + Sbjct: 640 AVRFEQRFHFQLGGQTERLIKNAQRLNMMHKLSGSRVFGELRLILNESKPLACLQRLESF 699 Query: 229 GIFKEIFLDVQEISLDQLSQVI--EAEQVFEW----KIDS-----LLRFIVLISWQDKKS 277 I + I + LD Q I E E+V W +D L+ F+ L S ++ Sbjct: 700 NILESIH---PLLKLDGNRQRILEETERVLGWYRLLYLDPEPRPWLVYFLGLCSGYNQSQ 756 Query: 278 ILSMAKKFSLPREIRYFL 295 + +A + + P++ F+ Sbjct: 757 VHLLAHRLAFPQKRENFI 774 >gi|254246957|ref|ZP_04940278.1| tRNA nucleotidyltransferase/poly(A) polymerase [Burkholderia cenocepacia PC184] gi|124871733|gb|EAY63449.1| tRNA nucleotidyltransferase/poly(A) polymerase [Burkholderia cenocepacia PC184] Length = 413 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 35/270 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P+++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMTAQGFRPVGKDFPVFLHPQT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + + DA +ED +RILR RF A + + + + L+ + + Sbjct: 118 GQADLRARVFRHVSDA---FVEDPVRILRIARFAARFADFTVADETLALMRRMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVF 256 L ER+W EI + L+EAK P + + G I +V + + Q + + Sbjct: 175 ALVPERVWQEIARGLMEAK-PSRMFAVLRDCGALARILPEVDALWGVPQRAD-------Y 226 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 ++D+ + ++++ + K+ S+A +F+ Sbjct: 227 HPEVDTGVHVMMVVDYAAKQG-YSLAVRFA 255 >gi|58428117|gb|AAW77154.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 713 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 8/108 (7%) Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D+ G+ D G DL+ R ++ +G A +ED +R+LR RF Sbjct: 390 DLLRRDFTINAIARDEDTGEFFDPYNGARDLQARVLRHVGPA---FVEDPVRVLRAARFM 446 Query: 175 AHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 A ++ L+ + A L L ER+W E+ + L P Sbjct: 447 ARLAPLGFTIAPETAALMREMAASGELDSLVPERVWQELRRALTCAQP 494 >gi|188575215|ref|YP_001912144.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519667|gb|ACD57612.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 713 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 8/108 (7%) Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D+ G+ D G DL+ R ++ +G A +ED +R+LR RF Sbjct: 390 DLLRRDFTINAIARDEDTGEFFDPYNGARDLQARVLRHVGPA---FVEDPVRVLRAARFM 446 Query: 175 AHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 A ++ L+ + A L L ER+W E+ + L P Sbjct: 447 ARLAPLGFTIAPETAALMREMAASGELDSLVPERVWQELRRALTCAQP 494 >gi|317050448|ref|YP_004111564.1| polynucleotide adenylyltransferase region [Desulfurispirillum indicum S5] gi|316945532|gb|ADU65008.1| Polynucleotide adenylyltransferase region [Desulfurispirillum indicum S5] Length = 875 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 86/388 (22%), Positives = 179/388 (46%), Gaps = 40/388 (10%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT----ILPDRVM-RIFSKTRYKVIPTSI 75 L N+ + + +VGG VRD ++ + QD+D +R+ R+ + R + Sbjct: 473 LANEMDIQVYLVGGIVRDLVLRVKNQDMDFVVAGDGISFGNRLAERLGGRIR---VHERF 529 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-K 134 + G I + D+ + R++ V K D RRDF+INA+ + Sbjct: 530 NTGVIILPGDDFRIDVASSRNEYYDHPGALPNVSPGSIKRDLYRRDFSINAMAVSLNTFE 589 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVAS 190 +IDY GG+ D+R++ I+ + + +ED RI R RF Y GE+ I L+ S Sbjct: 590 LIDYFGGVQDIRDKKIRVLHNL--SFIEDPTRIFRAVRFEQRYSFQIGEQTIK---LLRS 644 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF----LDVQEI----S 242 + ++ +S RI+ E+ + + P + ++ + + I D + + S Sbjct: 645 ARDLDLIQHISGHRIYEELRHMFLEQEPAKHMARLFELDLMRSIHPALGYDQKTMKLVES 704 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 ++ L V + ++ + + D+L ++L + + ++ I+++ LP+ R + F C Sbjct: 705 MEDLLVVSDFLRLEDVRRDALYCALILRTIKAEQ-IMALPILQELPQRDREIIA--FGC- 760 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLK---IFLALHYNNLTHQDTCFILQVLSDIIHWK 359 ++ + + E+ + L+ ++ + + + LA+ Y N Q + L+ + + Sbjct: 761 -SKAGMLLHELGRTGKLWQKLRLVKRHEEEVLLLAIVYGN--QQASAHFLR---EYLRSY 814 Query: 360 KPLFP-LTGDDVVKYGIPPGKKVGNILV 386 + + P L GD+++ G+P G +VG+ L+ Sbjct: 815 RTIHPILRGDELMALGVPRGHQVGDALL 842 >gi|126695498|ref|YP_001090384.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT 9301] gi|126542541|gb|ABO16783.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9301] Length = 405 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 82/318 (25%), Positives = 147/318 (46%), Gaps = 48/318 (15%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 FH+ + I L L KG S +VGG +RD ++ + +D+ ++P + + I K Sbjct: 22 FHNLNFI--LGFLPKG---SYLVGGYIRDIILGRKTEKLDV-DIVVPLKAIEIGKK---- 71 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-Y 128 I +I I + +++ I D+ + + + + D RDF+IN++ + Sbjct: 72 -IAENIESKFIVLDEKREVVRIFLNNIDIDIANQVSSTI-----EGDLFSRDFSINSIAF 125 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + ++D + GL DL ++ + +L D LRILR FRF + K ID + + Sbjct: 126 LLDKKCLLDPLNGLKDLEISLLR--SHSEKNLLNDPLRILRCFRFVSELNFK-IDLNLIT 182 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF-------KEIFLDVQEI 241 K K L I + ERI EI K++ N L A++ + IF FLD+++I Sbjct: 183 FIKKNKVKLYIAAKERINYEIQKIVNGANALEAVLLIKKLNIFGIDNLFEDSFFLDLEKI 242 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFI----------------VLISWQ---DKKSI--LS 280 + +L+Q + + + + I +L + +L W +KK+I L+ Sbjct: 243 NYAELNQEEKEKFLPSFFIAQILDVVSLEKLKFSKAEISKTKLLRKWHFLLEKKNISQLT 302 Query: 281 MAKKFSLPREIRYFLISF 298 A++F+L +E+ FL F Sbjct: 303 EAERFALHKELEMFLPLF 320 >gi|222056094|ref|YP_002538456.1| hypothetical protein [Geobacter sp. FRC-32] gi|221565383|gb|ACM21355.1| CBS domain containing protein [Geobacter sp. FRC-32] Length = 875 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 23/240 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKKY- 88 VGG VRD LMN V ++D+ T+ D ++ F+ + + +GT I+ + Sbjct: 480 VGGFVRDLLMN--VPNLDMDVTVEGDGILFAETFAGQYGCRVKSHDKFGTAVIVFPDGFK 537 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 D+ + R + V K D RRDFTIN L + G ++D+ G D Sbjct: 538 IDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTINTLAIRLNESEFGVMLDFFGAQRD 597 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID------SDGLVASIKAKKGLK 198 L++ I+ + + +ED R+ R RF E+ +D ++ L+ + L+ Sbjct: 598 LQDHLIRVLHNLS--FVEDPTRVFRAIRF-----EQRLDFTIAKHTENLIKNAVKMDFLE 650 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L +R+ +E+ +L PL AI M + G+ + I ++ E++ + + EA ++ W Sbjct: 651 KLGGKRLLTELVYILRENEPLKAIERMASFGLLRFIHPEL-ELTTGTRNMLEEARRIISW 709 >gi|294102166|ref|YP_003554024.1| CBS domain containing protein [Aminobacterium colombiense DSM 12261] gi|293617146|gb|ADE57300.1| CBS domain containing protein [Aminobacterium colombiense DSM 12261] Length = 877 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 93/394 (23%), Positives = 163/394 (41%), Gaps = 46/394 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT--------ILPDRVMRIFSKTRYKVIPTSISYGT 79 K+ IVGG VRD ++ D+D+ + I RYK G+ Sbjct: 476 KAYIVGGIVRDIMLGRESLDLDVVVEGNAVDFLKSINQEGCHISLHERYKT-------GS 528 Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKV 135 + I D+ T R + V + K D RRDFTINA+ D G + Sbjct: 529 L-IFSDGMKVDVATARREFYEYPLAQPRVSSDSLKHDLYRRDFTINAMAVSITPDSWGTL 587 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 IDY GG DL +T+K + + +ED R++R R D+ + K Sbjct: 588 IDYFGGRRDLNKKTLKVLHNLS--FVEDPTRVIRGIRLEQRLNFHLEDNTLRLLHSCLKG 645 Query: 196 G-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----------VQEIS-- 242 G L LS R+ SE+ ++ K P A+ M G++ +F ++ +S Sbjct: 646 GLLARLSGYRLRSELELTMQEKAPFPALKRMAELGVWDILFPGLRIGKTAVRTIRRLSAF 705 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-LSMAKKFSL-PREIRYFLISFFN 300 L ++S+ + +EW L F+ ++ + +++ ++ + SL PRE + S Sbjct: 706 LARISRDFPDFRGYEW-----LAFLAALAIESHETVQFAILDRLSLAPRERDIMVQSLDG 760 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 ++ L + K +YG + ++ AL ++ T + ++LS + + Sbjct: 761 LRAAEQDLGGRTLVKNSEIYG---YLREISPVTALFWSAATERWRVR-RRILSYLTRLYR 816 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 LTG D+++ G G ++G IL + +N Sbjct: 817 TKSHLTGRDLIEMGYRGGPQIGEILSQLRDRCLN 850 >gi|156837098|ref|XP_001642583.1| hypothetical protein Kpol_1075p3 [Vanderwaltozyma polyspora DSM 70294] gi|156113130|gb|EDO14725.1| hypothetical protein Kpol_1075p3 [Vanderwaltozyma polyspora DSM 70294] Length = 549 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 24/212 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-------FSKTRYKVIPTSISYGTIKII 83 I GG VRD L+ D+DIA I+ RY + P SI + K Sbjct: 70 ITGGWVRDKLLGSESHDLDIAINIMSGENFATKLNDFLQIHYDRYNLKPHSI-HKIDKNP 128 Query: 84 CRKKYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130 + K+ + T LRS+ T+ V + D+LRRD T+NAL+ + Sbjct: 129 EKSKHLETATTKLFDVEVDFVNLRSEEYTENSRIPTVEFGTPEQDALRRDATLNALFYNI 188 Query: 131 QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +V D+ G G+ DL ++ L+D LR+LR RF + + + DS Sbjct: 189 SKKEVEDFTGRGIEDLSAGILRTPLPPRKTFLDDPLRVLRLIRFASRFNFQIEDSVKNAM 248 Query: 190 SIK--AKKGLKILSSERIWSEINKLLEAKNPL 219 S K K +S ERI E+ K+ + K PL Sbjct: 249 SDKDINKAFYTKISRERIGVEMEKIFDGKTPL 280 >gi|153840014|ref|ZP_01992681.1| poly(A) polymerase [Vibrio parahaemolyticus AQ3810] gi|149746445|gb|EDM57460.1| poly(A) polymerase [Vibrio parahaemolyticus AQ3810] Length = 350 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 4/148 (2%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF Sbjct: 43 DAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFA 102 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + +I+ D + L+ + S R++ E KLL++ + L + +F+++ Sbjct: 103 VKL-DFDIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQL 161 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDS 262 F + E + S EQ+ + +DS Sbjct: 162 FPAISEHFTEDYSS--HTEQMLDLVLDS 187 >gi|77918901|ref|YP_356716.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter carbinolicus DSM 2380] gi|77544984|gb|ABA88546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter carbinolicus DSM 2380] Length = 888 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 24/285 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-F 89 +VGG VRD L+ D+DI +++ + + T +I + Sbjct: 485 VVGGFVRDLLLRQENFDVDIVVEGDGIAFAEEYARRYDCRVRAHKKFATAVLIFADGFKV 544 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGKVIDYVGGLNDL 145 D+ + R++ + V K D RRDFTIN AL G+++DY GG NDL Sbjct: 545 DVASARTEYYLEPGALPTVENASIKLDLYRRDFTINTLAIALNGPHFGELLDYFGGQNDL 604 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 R + I+ + + +ED R+ R RF G + + L+ S L +S R Sbjct: 605 RGKAIRVLHNL--SFVEDPTRMFRAIRFEQRLGFQMGRHTVHLLKSAVRMGFLDKISGPR 662 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDVQEISLDQLSQVIEA---------- 252 +++E+ + +PL A+ + G+ I L V+ +S + +A Sbjct: 663 VFNELVLIFRESDPLPAMRRLDELGLLAFIHPTLSVRHLSDGTFAAAKQAVDWYELLYTG 722 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 E+ WK+ F+ L+S D + + ++ ++P + F S Sbjct: 723 ERCQRWKV----FFLCLLSDLDHGEVQQIVQRLAMPPQCEEFFGS 763 >gi|89890534|ref|ZP_01202044.1| polyA polymerase [Flavobacteria bacterium BBFL7] gi|89517449|gb|EAS20106.1| polyA polymerase [Flavobacteria bacterium BBFL7] Length = 477 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 16/215 (7%) Query: 28 KSCIVGGAVRDSLMNLSV-QDIDIATT----ILPDRVMRIFSK-TRYKVIPTSISYGTIK 81 ++ ++GG VRD + QDIDI L +V + + T+ V T YGT Sbjct: 28 EAYVIGGFVRDYFLKRGAKQDIDIVAVGSGIELAQKVAALLPQSTKVSVFKT---YGTAM 84 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVID 137 + + R + T +V + D RRDFTINA L + G+++D Sbjct: 85 VKTDDFELEFVGARKESYTRDSRNPIVEDGTLEDDQNRRDFTINAMAFSLSSQNYGQLVD 144 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG- 196 G+ DL + IK + + +D LR++R RF A + D+ SIK Sbjct: 145 PFNGMVDLEKKIIKTPLEPNVTYSDDPLRMMRAIRFAAQLNFRIEDTS--FHSIKNNASR 202 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 +KI+++ERI +E+NK++ P + + + G+ Sbjct: 203 IKIITNERIITELNKIMMCDEPSHGFILLEKTGLL 237 >gi|170734383|ref|YP_001766330.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia cenocepacia MC0-3] gi|226702041|sp|B1JZZ7|CCA_BURCC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|169817625|gb|ACA92208.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia cenocepacia MC0-3] Length = 413 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 35/270 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P+++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMTAQGFRPVGKDFPVFLHPQT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGALVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI- 199 G DLR R + + DA +ED +RILR RF A + + + + L + +I Sbjct: 118 GQADLRARVFRHVSDA---FVEDPVRILRIARFAARFADFTVADETLALMRRMVDAGEID 174 Query: 200 -LSSERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVF 256 L ER+W EI + L+EAK P + + G I +V + + Q + + Sbjct: 175 ALVPERVWQEIARGLMEAK-PSRMFAVLRDCGALARIVPEVDALWGVPQRAD-------Y 226 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 ++D+ + ++++ + K+ S+A +F+ Sbjct: 227 HPEVDTGVHVMMVVDYAAKQG-YSLAVRFA 255 >gi|169775845|ref|XP_001822389.1| poly(A) polymerase [Aspergillus oryzae RIB40] gi|83771124|dbj|BAE61256.1| unnamed protein product [Aspergillus oryzae] Length = 567 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 86/157 (54%), Gaps = 6/157 (3%) Query: 89 FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDL 145 D+ LR + +D R ++ F + D++RRD TINAL+ + + KV D+ G D+ Sbjct: 172 IDLVNLRKETYSDDSRNPQMEFGT-AEEDAMRRDATINALFYNLNESKVEDFTRRGFQDM 230 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI-LSSE 203 R++ I+ + + +D LR+LR RF + G + + D++ + + + LK+ +S E Sbjct: 231 RDQVIRTPMEPYQTFKDDPLRVLRLIRFASRLGYRIDEDTENAMKNKDISEALKLKISRE 290 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 R+ +E+ K+L+ +P A+ + ++ IF + Q+ Sbjct: 291 RVGTEMMKMLKGPDPRGALQFIDRLELYPTIFANHQD 327 >gi|312131994|ref|YP_003999334.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leadbetterella byssophila DSM 17132] gi|311908540|gb|ADQ18981.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leadbetterella byssophila DSM 17132] Length = 479 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 11/219 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSK-TRYKVIPTSISYGTIKII 83 ++ +VGG VRD ++ + +DID + + I + + SK ++ + T ++GT + + Sbjct: 29 QAYVVGGFVRDLILCRAGKDIDFVCVGSGI--ELAIATASKLGKHISVNTFKNFGTAQFV 86 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYV 139 ++ R + +V + D RRDFTINA L G+++D Sbjct: 87 YDGYEYEFVGARRESYRSDSRKPIVEDGTLEEDQNRRDFTINAMALSLNKKDYGRLLDPF 146 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GL D++ R I+ D +D LR++R RF + +I+++ + I Sbjct: 147 QGLEDIKRRLIRTPLDPETTFSDDPLRMMRAVRFASQLN-FDIETETFEGLKAMAPRISI 205 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +S ERI E+NK++ + P +Y G+ + IF ++ Sbjct: 206 ISQERITDELNKIILSPKPSYGFKLLYQVGLLEIIFPEL 244 >gi|197116551|ref|YP_002136978.1| nucleic acid-independent polyadenylating polymerase [Geobacter bemidjiensis Bem] gi|197085911|gb|ACH37182.1| nucleic acid-independent polyadenylating polymerase [Geobacter bemidjiensis Bem] Length = 481 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D++RRDFT+NAL+ + +ID+VGG+ DL+ I+ IGD R ED +R++R R Sbjct: 173 EEDAVRRDFTVNALFYNIADFSIIDHVGGMEDLKQGLIRTIGDPLVRFTEDPVRMIRAIR 232 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + G NI+ A + + + R++ E+ KLL M + G+F Sbjct: 233 FASMLG-FNIEERTEAAIEELCGTINKATPPRLYEEVLKLLLLGAGERTYQMMRHSGLFA 291 Query: 233 EIF 235 +F Sbjct: 292 PLF 294 >gi|254251184|ref|ZP_04944502.1| HDIG [Burkholderia dolosa AUO158] gi|124893793|gb|EAY67673.1| HDIG [Burkholderia dolosa AUO158] Length = 413 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMIAQGFRPVGKDFPVFLHPDT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPDGALIGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DLR R + + DA +ED +RILR RF A + + + ++ L+ + + Sbjct: 118 GQADLRARVFRHVSDA---FVEDPVRILRVARFAARFADFTVADETRALMRRMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W EI + L+EAK Sbjct: 175 ALVPERVWQEIARGLMEAK 193 >gi|327398274|ref|YP_004339143.1| polynucleotide adenylyltransferase region [Hippea maritima DSM 10411] gi|327180903|gb|AEA33084.1| Polynucleotide adenylyltransferase region [Hippea maritima DSM 10411] Length = 870 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 105/390 (26%), Positives = 174/390 (44%), Gaps = 68/390 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGG +RD ++ DIDI I D ++ + F+K + + T + T ++ + Sbjct: 471 LVGGIIRDIILGWENLDIDI--VIEGDGIVFAKEFAKIKQAKVATHERFKTATLVMKDGM 528 Query: 89 -FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---DQQGKVIDYVGGLND 144 DI T R + VV K D RRDFTINAL D+ G ++D+ GGLND Sbjct: 529 RIDIATAREEYYDLPGALPVVEKSSIKLDLYRRDFTINALAMKLHDEFGDLLDFFGGLND 588 Query: 145 LRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 ++N+ I+ + H + ++D R+ R RF A G + +D L+ K+ Sbjct: 589 IKNKKIRVL----HMLSFVDDPTRMYRAVRFAARLGFDIGQQTDRLI---------KVAV 635 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-----------LDVQEISLDQ-LSQV 249 I +++ K+ N IVH+ N K F LD + I D+ LS + Sbjct: 636 ELGIVNKVEKI----RIFNEIVHILNNDNVKSSFEMLKSYRLIRTLDNKLIIDDRILSYI 691 Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL------ 295 EAE++ + KI F++L+ + KS S +K + F+ Sbjct: 692 DEAEEIVKSCSIFCKNKKIKRERVFLILLEYLFGKST-SFSKAVGADDQTYEFVKNTSKK 750 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 I N ++K ++ EI Y K+ L+ LAL+ LT + I + L D+ Sbjct: 751 IPIANGILSKKNVNDLEI----YEALSKI---PLEGILALY--PLTKEKERLI-RYLEDL 800 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 +H ++P+ + G D++K G P K G ++ Sbjct: 801 MH-REPI--IKGKDLIKLGFKPSKIFGQMI 827 >gi|261278702|pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I gi|261278703|pdb|3H37|B Chain B, The Structure Of Cca-Adding Enzyme Apo Form I Length = 441 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 20/238 (8%) Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + DIDI ++ + F++ Sbjct: 16 DPKILNLFRLLGKFGDEVNXPVYVVGGFVRDLLLGIKNLDIDI---VVEGNALE-FAEYA 71 Query: 68 YKVIPTSI----SYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +P + + T + + DI T R + V K D RRDF Sbjct: 72 KRFLPGKLVKHDKFXTASLFLKGGLRIDIATARLEYYESPAKLPDVEXSTIKKDLYRRDF 131 Query: 123 TINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINA L G +ID+ GG DL+ I+ + ++D RILR RF + Sbjct: 132 TINAXAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHTLS--FVDDPTRILRAIRFEQRFD 189 Query: 179 EKNIDSDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + ++ + ++G L+ + R+ E+ K+LE KNPL +I + K +F Sbjct: 190 FRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRXAQFDVIKHLF 247 >gi|46580245|ref|YP_011053.1| tRNA nucleotidyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|46449662|gb|AAS96312.1| tRNA nucleotidyltransferase, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311233770|gb|ADP86624.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris RCH1] Length = 383 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGGAVRD L+ + ++ DIA F + + + S K+ R Sbjct: 2 KTYLVGGAVRDILIGRTPREHDIA-----------FEASVAHFLQANPS--ARKVGKRID 48 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 + I + + G D +AD L+RDFTINAL + G + + L DLR Sbjct: 49 VYLIGNVEHRPVQGG---------DIRADLLQRDFTINALALEADGTLHAHPDALADLRA 99 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--SIKAKKGLKILSSERI 205 I+ ++ D +R+LR RF A E ++ + L A ++ A L + E++ Sbjct: 100 SIIRPASPG--ALMADPVRVLRAARFAAQLPEMSLAQETLEAMRAVAAAGYLAEMPCEQV 157 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-LDQLSQVIEAEQVFEWKIDSLL 264 E K L + P + + GG + F +V +++ + F+ ID + Sbjct: 158 CRETLKALGSPAPERFFISLAKGGCLQPWFAEVADLTGVPAGPPAYHTGSAFDHTIDIMR 217 Query: 265 RF 266 R Sbjct: 218 RL 219 >gi|213579923|ref|ZP_03361749.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 277 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 114 KADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR Sbjct: 10 EEDAQRRDFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRA 67 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A + I + + L + R++ E KLL+A N + + Sbjct: 68 VRFAAKLNMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHL 126 Query: 231 FKEIF 235 F+ +F Sbjct: 127 FQPLF 131 >gi|213614454|ref|ZP_03371280.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 242 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 114 KADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTIN+LY AD V DYVGG+ DL+ I+ IG+ R ED +R+LR Sbjct: 18 EEDAQRRDFTINSLYYSVAD--FTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRA 75 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A + I + + L + R++ E KLL+A N + + Sbjct: 76 VRFAAKLNMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHL 134 Query: 231 FKEIF 235 F+ +F Sbjct: 135 FQPLF 139 >gi|225174850|ref|ZP_03728847.1| CBS domain containing protein [Dethiobacter alkaliphilus AHT 1] gi|225169490|gb|EEG78287.1| CBS domain containing protein [Dethiobacter alkaliphilus AHT 1] Length = 873 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 91/433 (21%), Positives = 182/433 (42%), Gaps = 55/433 (12%) Query: 17 NILSLLNKGEDKSCI----VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++L L+ + DK + VGG +RD L+N+ D+D+ +K + Sbjct: 459 SLLLLVAQKADKENVKVFAVGGFIRDLLLNIKNHDLDLVVEPAAIPFAEELNKMLGGRLT 518 Query: 73 TSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + +GT I+ + + D+ T R + V K D RRDFTIN L Sbjct: 519 SHEKFGTASIVLPEGIHIDLVTSRQEFYARPAALPEVEQSSLKNDLFRRDFTINTLACSL 578 Query: 132 Q----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-G 186 GK+ID G+ DL I+ + + +ED LR+LR RF +G + ++ Sbjct: 579 NSPGFGKLIDLFNGIGDLEKGLIRVLYNLS--FVEDPLRVLRAIRFEQRFGFRLEETTLS 636 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L+ + + L+ +S ER+ E+ L+ + ++ + I IF ++ +S Sbjct: 637 LMENAAQTRVLEKVSKERLHDELVLALQEEKAPEILIRYFTLNIAPMIFPGIR-LSDALQ 695 Query: 247 SQVIEAEQVFEWKIDS------------LLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 ++ A ++ W + L ++ +Q+ + I ++ LP++ R Sbjct: 696 ERLFAAREMCYWANRNWPDTEVVPGNLYLAALLLEAPFQEARHI---CRRLRLPQKQREP 752 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV--- 351 +++ ++P +K +K++ LK + +T +LQ Sbjct: 753 ILAAVE--------AVPRLK-------EKLLANALKPSELYRLFSGQPVETLLLLQADSK 797 Query: 352 -----LSDIIHWKK--PLFP-LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 S ++W+K + P ++G D+ + G PG +L H + +N + +E+ Sbjct: 798 QSRIWESTALYWEKLRHIQPHISGHDLRELGFKPGPGFQEVLSHIRAARLNGEVKNREEE 857 Query: 404 LHHLLRKLIASSQ 416 L + +K++A+ + Sbjct: 858 L-AMAKKMLAARE 869 >gi|88858395|ref|ZP_01133037.1| tRNA nucleotidyltransferase [Pseudoalteromonas tunicata D2] gi|88820012|gb|EAR29825.1| tRNA nucleotidyltransferase [Pseudoalteromonas tunicata D2] Length = 369 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 87/205 (42%), Gaps = 46/205 (22%) Query: 31 IVGGAVRDSLMNLSVQDIDIA--------------TTILPDRVMRIFSKTR--YKVIPTS 74 +VGGAVRD+L+ V + D T + D + + KT+ Y + T Sbjct: 5 LVGGAVRDTLLGRPVLERDFVVVGATAEQMLSQGYTQVGKDFPVFLHPKTKEEYALARTE 64 Query: 75 ISYGT--IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 G IC + TL DLI RRD T+NA+ Sbjct: 65 RKQGQGYTGFIC--DFNPNVTLEEDLI-------------------RRDLTVNAIAQAPD 103 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLV 188 G++ID G +DL NR ++ + A ED LRILR RF A Y ++ L+ Sbjct: 104 GQLIDPYNGQDDLNNRILRHVSGA---FAEDPLRILRVARFAARYNYLGFTVAPETITLM 160 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 ++ + LK L++ER+W E K L Sbjct: 161 QNMVTQGELKTLTAERVWIEWEKSL 185 >gi|39997282|ref|NP_953233.1| polyA polymerase family protein [Geobacter sulfurreducens PCA] gi|39984172|gb|AAR35560.1| polyA polymerase family protein [Geobacter sulfurreducens PCA] gi|307634982|gb|ADI84942.2| cytidine-specific tRNA nucleotidyltransferase [Geobacter sulfurreducens KN400] Length = 430 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 98/430 (22%), Positives = 168/430 (39%), Gaps = 50/430 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKVIPTSIS 76 I SL G + VGG VRD+L+ DIDI + + R + ++ P Sbjct: 17 IASLARHGGFGAWFVGGCVRDALLARPSNDIDIVVGPGGEDLPRAVAARIGGSFFPLDEE 76 Query: 77 YGTIKIICRKK--YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 G +++ + + D L+ I AD RDFTINAL Sbjct: 77 RGHARVVLKGEGASCDFAPLQGGTIA--------------ADLALRDFTINALAVSCGSD 122 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D +GG DL R I+ + D LRI+R +RF AH + I + L Sbjct: 123 DLLDPLGGAADLAQRVIRAC--SAGAFAADPLRIVRAYRFAAHL-DFEIHAATLALIPDH 179 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF------LDVQEISLDQLS 247 L ++ ERI E+ ++L+ + + ++ M G+ IF D +LD++ Sbjct: 180 APLLATVAGERIRDELFRMLDLPHAVPYVLKMSCAGVTGAIFGADDLPADTAAGALDRVE 239 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------KFSLPREI---RYFLISF 298 + F + + +R + Q +I ++AK +P I R L Sbjct: 240 SLCRDLSAFGTEAEP-VRARLRQEVQPGITIRALAKLAAFLNGAGIPAGIASQRLMLGKA 298 Query: 299 FN------CNFNQKT----LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 C+ + T + P+ LF L+ + ++ L L + +D C Sbjct: 299 ATRLLELLCSSARLTWPAPAAAPDPHALFTLFCHREPAGCEQLILPL-AEGILPEDRCRH 357 Query: 349 LQVLSDIIHWKK-PLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 L H + LTGDD+ + G+PPG++VG + + + E + Sbjct: 358 LAAYLTRQHIPRGGRLLLTGDDIMILLGLPPGRQVGEAIELLRAAQSTGEVRTRAEAQRY 417 Query: 407 LLRKLIASSQ 416 L +K + + + Sbjct: 418 LAKKQLTTPE 427 >gi|253698789|ref|YP_003019978.1| poly(A) polymerase [Geobacter sp. M21] gi|251773639|gb|ACT16220.1| poly(A) polymerase [Geobacter sp. M21] Length = 482 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D++RRDFT+NAL+ + +ID+VGG+ DL+ I+ IGD R ED +R++R R Sbjct: 173 EEDAVRRDFTVNALFYNIADFSIIDHVGGMEDLKQGLIRTIGDPLVRFTEDPVRMIRAIR 232 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + G NI+ A + + + R++ E+ KLL M + G+F Sbjct: 233 FASMLG-FNIEERTEAAIEELCGTINKATPPRLYEEVLKLLLLGAGERTYQMMRHSGLFA 291 Query: 233 EIF 235 +F Sbjct: 292 PLF 294 >gi|261856284|ref|YP_003263567.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Halothiobacillus neapolitanus c2] gi|261836753|gb|ACX96520.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Halothiobacillus neapolitanus c2] Length = 412 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 28/242 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKYF 89 IVGGAVRD L+ + D D M+ +P + + R++Y Sbjct: 11 IVGGAVRDRLLGRPIHDRDWVVLGSTPEAMQA-----QGFLPVGHDFPVFLHPKTREEYA 65 Query: 90 DITTLRSDLITDGR-YAKVVFTRDWKA----DSLRRDFTINALYADQQGKVIDYVGGLND 144 T R GR + F D K D RRD TINA+ G +ID D Sbjct: 66 LARTERKS----GRGHQGFTFNADPKVTLEDDLQRRDLTINAMAQTADGTLIDPFDFKRD 121 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L +R ++ +G A ED LR+LR RF A + L+ ++ L L Sbjct: 122 LDDRILRHVGPA---FAEDPLRVLRVARFAAQLAPLGFTLASPTRDLMQAMTNAGELNDL 178 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER+W E +K L + P + + G +F +V D L V + E+ + +I Sbjct: 179 TAERVWQETHKALASPAPARYFDILRDVGALAVLFPEV-----DALFGVPQPEK-YHPEI 232 Query: 261 DS 262 DS Sbjct: 233 DS 234 >gi|221064990|ref|ZP_03541095.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Comamonas testosteroni KF-1] gi|220710013|gb|EED65381.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Comamonas testosteroni KF-1] Length = 420 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 25/201 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKYF 89 VGGAVRD+L+ L V D D + P+++ + +P + + ++Y Sbjct: 9 VGGAVRDALLGLPVNDTDWVVVGATPEQM------SARGFVPVGRDFPVFLHPQTHEEYA 62 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTIN--ALYADQQGK-----VIDYV 139 T R + + G VV T + D RRD TIN A AD +GK ++D Sbjct: 63 LARTERKNGM--GYRGFVVHTAADVTLEEDLARRDLTINSIAAPADWRGKDELQDLVDPY 120 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGL 197 G DL++R ++ + DA ED +RILR RF A + + + + L+ + A + Sbjct: 121 HGQQDLKDRVLRHVTDA---FREDPVRILRLARFAARFTDFRVAPETMELMREMVAAGEV 177 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ER+W EI++ L + P Sbjct: 178 DALVPERVWQEISRGLMEERP 198 >gi|323337860|gb|EGA79100.1| Cca1p [Saccharomyces cerevisiae Vin13] Length = 452 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 38/222 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSI------ 75 I GG VRD L+ D+DIA T L + + + ++K Y P +I Sbjct: 56 ITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAK--YGAKPHNIHKIDKN 113 Query: 76 -------SYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 T K+ + D LRS+ + R KV F + D+LRRD T+NAL Sbjct: 114 PEKSKHLETATTKLFGVE--VDFVNLRSEKYXELSRIPKVCFGTP-EEDALRRDATLNAL 170 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 + + +G+V D+ GL DL++ ++ A L+D LR+LR RF + + N D Sbjct: 171 FYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRF---NFTID 227 Query: 186 GLVASIKAKKGLKI-----LSSERIWSEINKLLEAKNPLNAI 222 V + + + +S ER+ E+ K+L PL A+ Sbjct: 228 PEVMAEMGDPQINVAFNSKISRERVGVEMEKILVGPTPLLAL 269 >gi|209880381|ref|XP_002141630.1| poly(A) polymerase family protein [Cryptosporidium muris RN66] gi|209557236|gb|EEA07281.1| poly(A) polymerase family protein [Cryptosporidium muris RN66] Length = 674 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 17/159 (10%) Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLR 146 DI LR++ T ++ + D+LRRDFTIN+++ + GK+ D+ GL DL Sbjct: 196 LDIVNLRTETYTKDSRIPIIKCGLPEEDALRRDFTINSMFYNINNGKLEDFTKKGLEDLY 255 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKN-----IDSDGLVASIKAKKGLKI 199 N+ I+ + +L+D LR+LR FRF A H+ N + L ++ K Sbjct: 256 NQVIRTPLNPIQTLLDDPLRVLRAFRFAARLHFRLDNELLEACNEPALNEALATK----- 310 Query: 200 LSSERIWSEINKL---LEAKNPLNAIVHMYNGGIFKEIF 235 +S ERI +E++++ L NP + + N G+ +F Sbjct: 311 VSRERIGAEVHEMVTNLSIGNPAIGLRMITNSGLADSVF 349 >gi|207741964|ref|YP_002258356.1| multifunctional cca protein [Ralstonia solanacearum IPO1609] gi|206593350|emb|CAQ60277.1| multifunctional cca protein [includes: cca-adding enzyme (trna nucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trna cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase ; 2', 3'-cyclic phosphodiesterase ; phosphatase ] [Ralstonia solanacearum IPO1609] Length = 429 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P + +T K P + + + Sbjct: 25 VGGAIRDTLLGLPVQDRDYVVVGATPAAMEARGFRTVGKDFPV--------FLHPRTQAE 76 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ G V+D G Sbjct: 77 YALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVGPVVDPYG 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL R + + +A ED +RILR RF A + E ++ +++ L+ + + Sbjct: 137 GQADLAARAFRHVSEA---FAEDPVRILRVARFAARFAEFHVAPETNALMQRMVEAGEVD 193 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E + L+EA+ Sbjct: 194 ALVPERVWQEFARGLMEAR 212 >gi|207727576|ref|YP_002255970.1| multifunctional cca protein [Ralstonia solanacearum MolK2] gi|206590814|emb|CAQ56426.1| multifunctional cca protein [includes: cca-adding enzyme (trna nucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trna cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase ; 2', 3'-cyclic phosphodiesterase ; phosphatase ] [Ralstonia solanacearum MolK2] Length = 429 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P + +T K P + + + Sbjct: 25 VGGAIRDTLLGLPVQDRDYVVVGATPAAMEARGFRTVGKDFPV--------FLHPRTQAE 76 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ G V+D G Sbjct: 77 YALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVGPVVDPYG 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL R + + +A ED +RILR RF A + E ++ +++ L+ + + Sbjct: 137 GQADLAARAFRHVSEA---FAEDPVRILRVARFAARFAEFHVAPETNALMQRMVEAGEVD 193 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E + L+EA+ Sbjct: 194 ALVPERVWQEFARGLMEAR 212 >gi|264680397|ref|YP_003280307.1| metal dependent phosphohydrolase [Comamonas testosteroni CNB-2] gi|262210913|gb|ACY35011.1| metal dependent phosphohydrolase [Comamonas testosteroni CNB-2] Length = 420 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 25/201 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKYF 89 VGGAVRD+L+ L V D D + P+++ + +P + + ++Y Sbjct: 9 VGGAVRDALLGLPVNDTDWVVVGATPEQM------SARGFVPVGRDFPVFLHPRTHEEYA 62 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTIN--ALYADQQGK-----VIDYV 139 T R + + G VV T + D RRD TIN A AD G ++D Sbjct: 63 LARTERKNGM--GYRGFVVHTAADVTLEEDLARRDLTINSIAAPADWTGNGNLEDLVDPY 120 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGL 197 G DL+NR ++ + DA ED +RILR RF A + + ++ + L+ + A + Sbjct: 121 HGQQDLKNRVLRHVTDA---FREDPVRILRLARFAARFTDFSVAPETMELMREMVAAGEV 177 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ER+W EI++ L + P Sbjct: 178 DALVPERVWQEISRGLMEERP 198 >gi|83746014|ref|ZP_00943070.1| tRNA nucleotidyltransferase [Ralstonia solanacearum UW551] gi|83727408|gb|EAP74530.1| tRNA nucleotidyltransferase [Ralstonia solanacearum UW551] Length = 461 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P + +T K P + + + Sbjct: 57 VGGAIRDTLLGLPVQDRDYVVVGATPAAMEARGFRTVGKDFPV--------FLHPRTQAE 108 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALY---ADQQ---GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ A+ G V+D G Sbjct: 109 YALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVGPVVDPYG 168 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL R + + +A ED +RILR RF A + E ++ +++ L+ + + Sbjct: 169 GQADLAARAFRHVSEA---FAEDPVRILRVARFAARFAEFHVAPETNALMQRMVEAGEVD 225 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E + L+EA+ Sbjct: 226 ALVPERVWQEFARGLMEAR 244 >gi|256004006|ref|ZP_05428992.1| CBS domain containing protein [Clostridium thermocellum DSM 2360] gi|255992134|gb|EEU02230.1| CBS domain containing protein [Clostridium thermocellum DSM 2360] Length = 870 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 96/416 (23%), Positives = 169/416 (40%), Gaps = 72/416 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS----YGTIKIICRK 86 +VGG VRD + L V++ DI + D +M FS+ + ++ +GT ++ Sbjct: 485 VVGGFVRDLI--LGVENFDIDIVVEGDALM--FSEKLAQHYQAHLTKHDRFGTAVVVLED 540 Query: 87 KY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + D+ T R + VV K D RRDFTIN++ G ++D+ GG Sbjct: 541 DFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNKSGFGNIVDFYGG 600 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKIL 200 DL+ I+ + + +ED RI R RF Y K + A + G L + Sbjct: 601 RRDLQMGLIRIL--YNLSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFAIKAIESGILGKV 658 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------QEISLDQLSQ 248 S ERI E +L+ N + M + I K ++ +V E +L L + Sbjct: 659 SHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLLKNAEENLACLKE 718 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN------ 302 + ++ + +LL ++L S + + +++K L +E + ++ F Sbjct: 719 KVSVQESLDR---TLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFIEAKDIILSN 775 Query: 303 ------------FNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 +N+ K LS+ + L L +K I ++ L+ NNL + TC Sbjct: 776 LSGNIDISNYDVYNELKELSMEILFVLCMLSNEKKFIDRV----ILYINNLKNIKTC--- 828 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 +TG D+ + G+ PG + +L E +N + Q ++L Sbjct: 829 ---------------VTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDELE 869 >gi|50293743|ref|XP_449283.1| hypothetical protein [Candida glabrata CBS 138] gi|51704337|sp|Q9P4S5|CCA1_CANGA RecName: Full=CCA tRNA nucleotidyltransferase, mitochondrial; AltName: Full=CCA-adding enzyme; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyltransferase; AltName: Full=tRNA nucleotidyltransferase; Flags: Precursor gi|49528596|emb|CAG62257.1| unnamed protein product [Candida glabrata] Length = 531 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 32/216 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDR---------VMRIFSKTRYKVIPTSISYGTIK 81 I GG VRD L+ D+DIA I+ ++ F K Y V P SI + K Sbjct: 49 ITGGWVRDKLLGQGSHDLDIAINIMSGEEFATGLNGYLLEHFDK--YGVKPHSI-HKIDK 105 Query: 82 IICRKKYFDITT------------LRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY 128 + K+ + T LRS+ T D R F + D+LRRD T+NAL+ Sbjct: 106 NPEKSKHLETATTKLFDVEVDFVNLRSEEYTEDSRIPTTQFGTP-EEDALRRDATLNALF 164 Query: 129 AD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNID 183 + QQ V D+ G DL++ ++ A L+D LR+LR RF + + E + Sbjct: 165 YNIQQDAVEDFTKRGWQDLQDGVLRTPLPARQTFLDDPLRVLRLIRFASRFNFNIEAGVL 224 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 + I KI S ERI E+ K+L NP+ Sbjct: 225 KEMHDPEINEAFNNKI-SRERIGVEMEKILVGPNPI 259 >gi|164688262|ref|ZP_02212290.1| hypothetical protein CLOBAR_01907 [Clostridium bartlettii DSM 16795] gi|164602675|gb|EDQ96140.1| hypothetical protein CLOBAR_01907 [Clostridium bartlettii DSM 16795] Length = 450 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 20/208 (9%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYG 78 +L KG ++ VGG VRD ++ + ++D+DI I + +++I I G Sbjct: 15 EVLKKG-GRTFFVGGCVRDEILGIDIKDVDIEVHNIEVEDLVKILES-----IGDVQKIG 68 Query: 79 TIKIICRKKYFDIT-TLRSDLITDGRYAK--VVFTR---DWKADSLRRDFTINALYADQ- 131 + + K +DI + ++GR K +F +K +LRRDFTIN+L D Sbjct: 69 SFFGVFNLKGYDIDIAMPRKEKSNGRGHKDFEIFVDPFIGYKEAALRRDFTINSLMKDVL 128 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ID G+ DL N+ I+ + D ED LR+ R +F + + + + L++S Sbjct: 129 SGEIIDSFNGIEDLNNKIIRHVND--ESFCEDPLRVFRGSQFASRFDFEIYEKTKLLSST 186 Query: 192 KAKKGLKILSSERIWSEINK-LLEAKNP 218 + L+ ER++ E+ K LL+A P Sbjct: 187 ---MDVSSLAFERVFDELKKALLKANKP 211 >gi|224075475|ref|XP_002304649.1| predicted protein [Populus trichocarpa] gi|222842081|gb|EEE79628.1| predicted protein [Populus trichocarpa] Length = 525 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 22/235 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIP 72 +L+ L K + +VGG VRD ++ +D D+ T+ +V + F + R+ + Sbjct: 78 VLNGLKKKGYEVYLVGGCVRDLILKRIPKDFDVITSAELKQVRKAFHRCEIVGKRFPICH 137 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRD---WKADSLRRDFTINAL 127 + +++ F + L+SD +G R + RD W+ + L+RDFTIN L Sbjct: 138 VHVDDAIVEV----SSFSTSQLKSDGKFNGNVRKPRGCSERDFIRWR-NCLQRDFTINGL 192 Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDS 184 D ++ DY+GG+ D++ ++ + A+ +ED RILR R A H+G Sbjct: 193 MLDPYANIVYDYMGGITDIKKTKVRTVIPANLSFVEDSGRILRAIRIAARLHFG---FTR 249 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D ++ + + L RI E+N + + ++ M+ G+ EI L +Q Sbjct: 250 DLALSLKELSHSVLRLDKGRILLELNYMFAYGSAEASLRLMWRFGLL-EILLPIQ 303 >gi|310825246|ref|YP_003957604.1| polynucleotide adenylyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309398318|gb|ADO75777.1| Polynucleotide adenylyltransferase [Stigmatella aurantiaca DW4/3-1] Length = 256 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H+ + +++ LL + IVGGA RD LM + QD+DIA + V ++ + Sbjct: 15 HEVRIQDVVGLLAAAGMQVYIVGGAPRDWLMGVPTQDVDIAVDRSMEEVHQLLRHAYPDI 74 Query: 71 IPTSISYGTIKIIC----RKKYFDITTLRS--DLITDG-RYAKVVFTRDWKADSLRRDFT 123 P ++C D + LRS D+ D R + D + D+L RDF+ Sbjct: 75 DPVRSRLDRFGMMCWGDDASGGVDFSFLRSPGDIQNDDMRTTSFIPRGDVRDDALMRDFS 134 Query: 124 INALY--ADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRI 167 +NA Y + G ++D +G GL D++ R ++ I H R+LE RI Sbjct: 135 VNAFYFACHEGGVLLDPLGCGLEDVQGRILRLI--THPRVLETSYRI 179 >gi|8698608|gb|AAF78448.1|AF098803_1 tRNA nucleotidyltransferase [Candida glabrata] Length = 543 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 32/216 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDR---------VMRIFSKTRYKVIPTSISYGTIK 81 I GG VRD L+ D+DIA I+ ++ F K Y V P SI + K Sbjct: 49 ITGGWVRDKLLGQGSHDLDIAINIMSGEEFANGLNGYLLEHFDK--YGVKPHSI-HKIDK 105 Query: 82 IICRKKYFDITT------------LRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY 128 + K+ + T LRS+ T D R F + D+LRRD T+NAL+ Sbjct: 106 NPEKSKHLETATTKLFDVEVDFVNLRSEEYTEDSRIPTTQFGTP-EEDALRRDATLNALF 164 Query: 129 AD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNID 183 + QQ V D+ G DL++ ++ A L+D LR+LR RF + + E + Sbjct: 165 YNIQQDAVEDFTKRGWQDLQDGVLRTPLPARQTFLDDPLRVLRLIRFASRFNFNIEAGVL 224 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 + I KI S ERI E+ K+L NP+ Sbjct: 225 KEMHDPEINEAFNNKI-SRERIGVEMEKILVGPNPI 259 >gi|193212873|ref|YP_001998826.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobaculum parvum NCIB 8327] gi|193086350|gb|ACF11626.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobaculum parvum NCIB 8327] Length = 475 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 95/227 (41%), Gaps = 27/227 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP------------DRVMRIFSKTRYKVIP-TSISY 77 +VGG VRD +M DIDI P R +F + R I Sbjct: 29 LVGGYVRDLIMQRPCTDIDIMVIGEPVPFAKAIAEQLGGRNFVLFERFRTAQIELDDPEA 88 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQG 133 GT K+ +I R + + + D RRDFTINAL +Q+G Sbjct: 89 GTFKL-------EIVGARKESYNPESRKPITSIGTLEDDLSRRDFTINALALRLNREQRG 141 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D G +R + +K D +D LR++R RF + +D L A Sbjct: 142 ELVDLYDGQRHIREKLLKTPLDPEQTFSDDPLRMMRAARFACQL-DFRLDEATLEAMEAM 200 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--LDV 238 ++I+S ER+ E K++ A P + +++ G+ KEI LDV Sbjct: 201 SSRIQIVSRERVSHEFLKIMAAPKPSIGLKILHSTGLLKEIIPELDV 247 >gi|308801765|ref|XP_003078196.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putati (ISS) [Ostreococcus tauri] gi|116056647|emb|CAL52936.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putati (ISS) [Ostreococcus tauri] Length = 538 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 123/267 (46%), Gaps = 22/267 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTIL-----PDRVMRIFSKTRYK-----VIPTSISYG-- 78 + GG VRD L+ DID+A + ++V + VI ++ Sbjct: 68 VAGGWVRDKLVGRESDDIDVALDTMLGKEFAEKVNEYLEANGMETKGIGVIQSNPEQSKH 127 Query: 79 --TIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGK 134 T + R + D+ LRS+ + D R + F K D+ RRD TIN+L+ + + K Sbjct: 128 LETATMRVRDVWLDLVNLRSENYSEDSRIPDMEFGTA-KDDAFRRDLTINSLFYNLNEKK 186 Query: 135 VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS-IK 192 V D+ G+ DLR+ ++ L+D LRILR RF A +G + G AS Sbjct: 187 VEDFTERGIQDLRDGIVRTPLPPRTTFLDDPLRILRAVRFAARFGFDVDEEIGASASDPD 246 Query: 193 AKKGLK-ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + LK +S ER E+ +L+ ++P +A+ M I +F + +D +++ + Sbjct: 247 VQNALKHKVSRERFGKEVVGMLKGRSPADAVALMVAFKITPIVFQVPTQSVVDAVTETAD 306 Query: 252 AEQVFEWK-IDSLLRFIVLI-SWQDKK 276 ++ + I+ ++ + I SW D++ Sbjct: 307 RLSLYSTRCIERAIKEVASIESWLDEE 333 >gi|84625338|ref|YP_452710.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879299|ref|YP_202539.6| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas oryzae pv. oryzae KACC10331] gi|123520950|sp|Q2NZ41|CCA_XANOM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|84369278|dbj|BAE70436.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 410 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 8/108 (7%) Query: 116 DSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D+ G+ D G DL+ R ++ +G A +ED +R+LR RF Sbjct: 87 DLLRRDFTINAIARDEDTGEFFDPYNGARDLQARVLRHVGPA---FVEDPVRVLRAARFM 143 Query: 175 AHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 A ++ L+ + A L L ER+W E+ + L P Sbjct: 144 ARLAPLGFTIAPETAALMREMAASGELDSLVPERVWQELRRALTCAQP 191 >gi|237755615|ref|ZP_04584229.1| poly A polymerase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692210|gb|EEP61204.1| poly A polymerase [Sulfurihydrogenibium yellowstonense SS-5] Length = 601 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 95/391 (24%), Positives = 178/391 (45%), Gaps = 42/391 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +S I+GG VRD ++N D+DI +++ + K + + T ++I Sbjct: 215 RSFIIGGVVRDIILNRPNLDVDIIVEGDAPTLIKEYVKDKNYTFYIYNEFMTGQVIIENG 274 Query: 88 Y-FDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINAL----YADQQGKVIDYVGG 141 D +T R + + G Y +V ++ D RRDFTIN L + G +IDY Sbjct: 275 LKLDFSTARKEEYQSPGAYPRVEKATLFE-DLYRRDFTINTLAIEITSSNYGVLIDYFNA 333 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLK 198 + D++ + I+ + +ED +RILR RF + EKN + + + +KGL Sbjct: 334 IKDIKEKRIRILHSLS--FVEDPIRILRALRFAGRFNFKLEKNTEK---LLTYSVEKGLL 388 Query: 199 ILSSE-RIWSEINKLLEAKNPLNAIVHMYN-----GGIFKEIFLDV-QEISLDQLS-QVI 250 +++ RI E++ E + + I+ +Y+ IF + +D +EI L +L+ ++ Sbjct: 389 LVAPRGRINLELSLAFEEEKAI-EILKLYDKYKVLNKIFTQTHIDSKKEILLQKLTDNLV 447 Query: 251 EAEQVFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + + F+ VL+S + I K + +E + L F +FN+ Sbjct: 448 LLQHIKPYNYSKTTNFLYVLLSHLPTELIYENLKLYHFGKEAK--LCDKFVQDFNE---- 501 Query: 310 IPEIKKLFYLYG--DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 I +++ +F +Y K+ + L L L + ++ I +V KKPL + G Sbjct: 502 ILKLEDIFQIYKILKKINLEYLPAILTL-VDEDRYKKIIKIFEV------EKKPL--IKG 552 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 +D+++ G+ P K NIL ++ + F+ Sbjct: 553 EDLIELGLEPSKLFKNILEDVLEKQLKEVFK 583 >gi|284035597|ref|YP_003385527.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirosoma linguale DSM 74] gi|283814890|gb|ADB36728.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirosoma linguale DSM 74] Length = 484 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 27/227 (11%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT--------- 79 + ++GG VRD ++ +DID+ + K + ++GT Sbjct: 27 TYVIGGFVRDLILARPSKDIDVVCIGSGITLAEAVGKALNAHVAVFPNFGTAMLRAMQGD 86 Query: 80 ----IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQ 131 ++ + +K + R ++ DG + D RRDFTINA L Sbjct: 87 EEWEVEFVGARKESYRSESRKPIVEDGTL---------EDDQNRRDFTINAMGISLNKAS 137 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GL DL+ + I+ + +D LR++R RF + +I+ D A + Sbjct: 138 FGELLDPFDGLKDLKKKIIRTPLNPDITFSDDPLRMMRAIRFASQL-TFDIEPDTFDAIM 196 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + + + I+S ER+ E+NK++ + P +Y+GG+ + IF ++ Sbjct: 197 RMNERIDIVSRERVTDELNKIILSPVPSYGFKLLYHGGLLERIFPEL 243 >gi|72383343|ref|YP_292698.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. NATL2A] gi|72003193|gb|AAZ58995.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. NATL2A] Length = 395 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 38/235 (16%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 S +VGG+VRD+L+N Q D+ ++P + K+ T I + I R Sbjct: 32 SALVGGSVRDALLNKLSQKPDL-DFVIPTNAINFSENLSKKINGTFIKLDEKRDIAR--- 87 Query: 89 FDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTINALYADQQGK--VIDYVGGLN 143 L+ +G +A+ V + + D LRRDF INA+ GK + D GG+N Sbjct: 88 ---------LVINGWTLDFARQV-GENLQDDLLRRDFRINAIALRLTGKPEIFDPTGGIN 137 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH-----------YGEKNIDSDGLVASIK 192 DL+++ I I + + +L+D LRILR FRF + + N+D +A + Sbjct: 138 DLKSKKIVAISEKN--LLDDPLRILRGFRFMCELDFELEKKTKTFLKNNVDKLSNIAPER 195 Query: 193 AK-KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 K + LKI++S+ S LE + +++ +N F I L+ ++IS L Sbjct: 196 MKMEILKIVNSKWNSSVWKTYLELQ-----LLNEWNDNNFPYIELERKDISTKNL 245 >gi|255540089|ref|XP_002511109.1| poly(A) polymerase, putative [Ricinus communis] gi|223550224|gb|EEF51711.1| poly(A) polymerase, putative [Ricinus communis] Length = 524 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 71/166 (42%), Gaps = 30/166 (18%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD ++ +D DI T+ V R FS R +++ G IC D Sbjct: 102 LVGGCVRDLILKRIPKDFDIITSAELREVARAFS--RCEIV------GRRFPICHVYVGD 153 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSL-----------------RRDFTINALYADQQG 133 S T G+ F DW D+ +RDFTIN L D Sbjct: 154 TVVEVSSFSTTGQK----FGGDWNYDTQSPIDCDEKDYMRWRNCSQRDFTINGLMFDPYE 209 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 K++ DY+GGL D+R ++ + A + ED RILR R A G Sbjct: 210 KIVYDYIGGLEDIRKAKVRTVTPASNSFQEDCARILRAVRIAARLG 255 >gi|299532637|ref|ZP_07046025.1| metal dependent phosphohydrolase [Comamonas testosteroni S44] gi|298719272|gb|EFI60241.1| metal dependent phosphohydrolase [Comamonas testosteroni S44] Length = 420 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 26/200 (13%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKYF 89 VGGAVRD+L+ L V D D + P+++ + +P + + ++Y Sbjct: 9 VGGAVRDALLGLPVNDTDWVVVGATPEQM------SARGFVPVGRDFPVFLHPRTHEEYA 62 Query: 90 DITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFTIN--ALYADQQGK-----VIDYV 139 T R + + G VV T + D RRD TIN A AD G ++D Sbjct: 63 LARTERKNGM--GYRGFVVHTAADVTLEEDLARRDLTINSIAAPADWTGNGDLEDLVDPY 120 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGL 197 G DL+NR ++ + DA ED +RILR RF A + + ++ + L+ + A + Sbjct: 121 HGQQDLKNRVLRHVTDA---FREDPVRILRLARFAARFTDFSVAPETMELMREMVAAGEV 177 Query: 198 KILSSERIWSEINK-LLEAK 216 L ER+W EI++ L+EA+ Sbjct: 178 DALVPERVWQEISRGLMEAQ 197 >gi|307153895|ref|YP_003889279.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7822] gi|306984123|gb|ADN16004.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7822] Length = 908 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 32/177 (18%) Query: 31 IVGGAVRDSLM-----NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 +VGGAVRD L+ L++QDID+ A L +++ I+ + R V Sbjct: 490 LVGGAVRDLLLAPGEETLTLQDIDLVVDGFHRAADVGAGVELANQLQEIYPQVRLSV--- 546 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T +I K DI T R++ V + D RRDFTINAL Sbjct: 547 HGEFQTAALIWHKDAQLGSLMIDIATARTEFYPYPAANPQVEASSIRQDLYRRDFTINAL 606 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 + ++G+++D+ GG+ DLR++ I+ + + +ED RI R RF G K Sbjct: 607 AVRLTSPREGELLDFFGGVEDLRSQQIRVL--HANSFIEDPTRIYRAVRFAVRLGFK 661 >gi|9836828|gb|AAG00316.1|AF207744_1 tRNA nucleotidyltransferase [Kluyveromyces lactis] Length = 489 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 109/263 (41%), Gaps = 41/263 (15%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-------------TTILPDRVMRIFSKTRYKVIPTSISY 77 I GG VRD L+ D+DIA L DR + S I + S Sbjct: 43 ITGGWVRDKLLGNDSNDLDIAINNMTGEQFAEKLCAFLQDRGLETHS---LHTIDKNPSK 99 Query: 78 GTIKIICRKKYFDIT----TLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 C K FD+ LRS+ T + R KV F + D++RRD T+NA++ + Sbjct: 100 SKHLETCTTKLFDVPVDFVNLRSEEYTMESRIPKVEFGTPYD-DAMRRDATLNAMFYNIT 158 Query: 132 QGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + K+ D+ G DL + ++ ++D LR+LR RF + + N D Sbjct: 159 EDKIEDFTKKGFQDLNDGILRTPLPPRQTFIDDPLRVLRLIRFASRF---NFQIDPQTYQ 215 Query: 191 IKAKKGLKI-----LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 G+ +S R+++E++K L + NP A+ + G + E S Sbjct: 216 AMRDPGIHQSFNHKISKGRVYTEMHKTLTSANPFYAL-DLIQGAHLSRVIFTTNESS--- 271 Query: 246 LSQVIEAEQVFEWKIDSLLRFIV 268 E E ++E +D L+ +V Sbjct: 272 ----PEIESIYE-NLDQHLKSVV 289 >gi|123448783|ref|XP_001313117.1| polyA polymerase family protein [Trichomonas vaginalis G3] gi|121894989|gb|EAY00188.1| polyA polymerase family protein [Trichomonas vaginalis G3] Length = 448 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 23/230 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-----TTILPDRVMRIFSKTRYKVI-----PTSISYGTI 80 + GG VRD L+ DIDI + ++ + F + K+I P + Sbjct: 46 VAGGWVRDKLLGKQSDDIDICIEGCTSDDFGQKLSQQFPENTTKIIVMQENPKQSKFMKT 105 Query: 81 KIIC--RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 +C + D+ LR + D+ RD +INAL+ + KV D Sbjct: 106 VRVCIFGDTWIDVCNLRGEETETSPL----------TDAKHRDLSINALFYNITYSKVED 155 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 VGG+ DL+N+ I+ D ED LRI+R RF+ G K +S A + Sbjct: 156 LVGGIPDLKNQIIRTPIDPDLTFTEDPLRIIRAIRFYVRLGYKIHESIYEAAKLHVTDFE 215 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 + ++ ER+ +E K++E + ++ G F IF SL+ L Sbjct: 216 EKITKERVVAETIKIIEMGGLSTFLDYVIKIGFFDAIFDPYHLYSLNPLQ 265 >gi|167585186|ref|ZP_02377574.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Burkholderia ubonensis Bu] Length = 370 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 92/223 (41%), Gaps = 24/223 (10%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P++++ K K P + T + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMVAQGFKPVGKDFPVFLHPQT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLDEDLARRDLTINAMAREVSPDGSLAGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + + DA +ED +RILR RF A + + D L+ + + Sbjct: 118 GQADLRARVFRHVSDA---FVEDPVRILRIARFAARFTGFAVADDTLALMRRMVDAGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L +ER+W E+ + L P + G I +V + Sbjct: 175 ALVAERVWQELARGLMEARPSRMFDALRECGALARILPEVDAL 217 >gi|113866284|ref|YP_724773.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia eutropha H16] gi|123134513|sp|Q0KF16|CCA_CUPNH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|113525060|emb|CAJ91405.1| tRNA nucleotidyltransferase [Ralstonia eutropha H16] Length = 411 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 91/199 (45%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ QD D + P ++ K K P + T +++Y Sbjct: 6 VGGAIRDELLGKPSQDRDYVVVGATPAQMEAAGYKPVGKDFPVFLHPRT-----KEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALY----ADQQ--GKVIDYVG 140 R++ T Y F + + D +RRD TINA+ AD G VID G Sbjct: 59 -ALARTERKTAMGYKGFAFYCEPDVTLEDDLVRRDLTINAMARAVDADGNLTGPVIDPHG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLK 198 G DL R + + DA ED +RILR RF A + E + ++ L+ + A + Sbjct: 118 GQRDLAARLFRHVSDA---FAEDPVRILRVARFAARFHEFGVAAETMRLMREMVAAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EAK Sbjct: 175 ALVPERVWQELARGLMEAK 193 >gi|257455264|ref|ZP_05620499.1| multifunctional CCA protein [Enhydrobacter aerosaccus SK60] gi|257447226|gb|EEV22234.1| multifunctional CCA protein [Enhydrobacter aerosaccus SK60] Length = 393 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 82/341 (24%), Positives = 137/341 (40%), Gaps = 65/341 (19%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRI-FSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD ++ V + D + P++++ + FS+ + + Sbjct: 5 LVGGAVRDYVLAREVTEHDYVVVGATPEQMLELGFSQVG----------ADFPVFLHPRT 54 Query: 89 FDITTL-RSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYAD---------QQGK 134 D L R++ + Y D + D RRD TINA+ + +QGK Sbjct: 55 HDEYALARTERKSGNGYLGFNVHADAAVTLEEDLARRDLTINAMAIEVNGLFDCGFKQGK 114 Query: 135 -----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD---- 185 +ID GGL D++ + ++ + A ED +R+LR RF + Y D Sbjct: 115 FDARDIIDPYGGLADIQQKKLRHVSIA---FAEDPVRVLRLARFASRYAPLGFTVDESTT 171 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L + +KA L L +ER+WSE +K L P +Y + I + + S D Sbjct: 172 KLTSQMKAAGELSHLVAERVWSETSKALTQAWPDIYFDTLYQLNVLDVIMPKLYQASNDN 231 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 Q WQ S L MA + I++ L++ C + Sbjct: 232 PKQ-----------------------WQLMLSALRMAGEQQADNLIKFALVA--TCFKSD 266 Query: 306 KTLSIPEIKKLFYLYGDKVM--IAKLKIFLALHYNNLTHQD 344 + L+ P + L + G KV +L +F+ H++ L + D Sbjct: 267 QQLNNPTTEYLEFCQGLKVPKNTERLGLFILEHFDKLKNFD 307 >gi|156083260|ref|XP_001609114.1| tRNA nucleotidyltransferase/poly(A) polymerase family domain containing protein [Babesia bovis T2Bo] gi|154796364|gb|EDO05546.1| tRNA nucleotidyltransferase/poly(A) polymerase family domain containing protein [Babesia bovis] Length = 461 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 26/205 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTRYKVIPT------------S 74 + GG VRD L+N + +DIDIA T + + F++ Y T Sbjct: 66 VAGGWVRDKLLNQTSKDIDIALEHITGVDFCNYLNAFTEKSYGFHKTVGVVKRRPEQSKH 125 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 + TI I+ D LRS+ ++ D++RRDFTINAL+ + + Sbjct: 126 LETATINIMGLN--IDFVNLRSEDYAQNSRIPIMKIGTPFEDAMRRDFTINALFYNISKN 183 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD----GLV 188 + DY G G++DL+ I+ A L+D LR++R RF A G +DSD G Sbjct: 184 AIEDYTGKGIDDLKAEVIRTCSPAFGTFLDDPLRVIRAARFAARLGYA-LDSDIIKSGSD 242 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 + A+ K+ + RI E++ +L Sbjct: 243 PEVLAQLSQKV-AKARIAQELDDML 266 >gi|33239616|ref|NP_874558.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237141|gb|AAP99210.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 415 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 24/193 (12%) Query: 29 SCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGA+RD L+N S+ D+D ++P +I + T++ + I R Sbjct: 44 TVLVGGAIRDRLLNNYNSIPDLDF---VVPKHAFQISKDLAKRYGGTAVHLDQHRDIAR- 99 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD--QQGKVIDYVGGLND 144 + I + D+ + +D D LRRDFTINA+ + ID GGL+D Sbjct: 100 --YVINDWKIDIASQ-------IGKDLNDDLLRRDFTINAIALNIFPTPAFIDPAGGLDD 150 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG--LKILSS 202 L N+ K + + ++D LRILR R + E N+ + S+ K L ++S Sbjct: 151 LHNK--KLVAISEQNFIDDPLRILRGLRLVS---ELNLKLESQTESLLKKNAGLLNRVAS 205 Query: 203 ERIWSEINKLLEA 215 ERI E+ +L++ Sbjct: 206 ERIKVELERLVQG 218 >gi|91789755|ref|YP_550707.1| metal dependent phosphohydrolase [Polaromonas sp. JS666] gi|91698980|gb|ABE45809.1| metal dependent phosphohydrolase [Polaromonas sp. JS666] Length = 462 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 42/219 (19%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+LM L+VQD D + P+ ++ + K P + T R++Y Sbjct: 5 MVGGAVRDALMGLAVQDHDWVVVGATPEDLVAQGYQPVGKDFPVFLHPET-----REEY- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQG------------ 133 R++ T Y V D + D RRD TINA+ A + Sbjct: 59 --ALARTERKTARGYRGFVVHADPGVTLEQDLARRDLTINAIAAPARSTGAAAGAAARPG 116 Query: 134 ------------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 +ID GG D+R++ ++ + +A ED +RILR RF A + + + Sbjct: 117 AALNTDFDADFDALIDPYGGQKDIRDKVLRHVTEA---FREDPVRILRLARFAARFADFS 173 Query: 182 IDSD--GLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + + L+ + + + L ER+W E+ + L P Sbjct: 174 VAPETLALMRDMVTEGEVDALVPERVWQELARGLMEDKP 212 >gi|319935311|ref|ZP_08009749.1| hypothetical protein HMPREF9488_00580 [Coprobacillus sp. 29_1] gi|319809719|gb|EFW06120.1| hypothetical protein HMPREF9488_00580 [Coprobacillus sp. 29_1] Length = 446 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 18/199 (9%) Query: 31 IVGGAVRDSLM-NLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 IVGG+VRD ++ N D+D+ + +++ + +K Y V+ T I + K Sbjct: 23 IVGGSVRDVILKNSGEHDVDVEVYHMTYEQLHDLLAK--YGVVNTFGKMFAIMQLENLKG 80 Query: 89 FDITTLRSDLITDGRYA--KVVFTRDWKADSL--RRDFTINALYAD-QQGKVIDYVGGLN 143 +D R + ++ +V+ + + RRD T+NAL D Q ++ID GGL+ Sbjct: 81 YDFALPRQEKKVGEKHQDFEVIINPELPLEKAVKRRDLTMNALMYDYQNEEIIDLCGGLD 140 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGLKI 199 D++ ++ + +ED LR+LR +F A + EK +D L + + LK Sbjct: 141 DIKKHQVRCVDP--QSFVEDPLRVLRIAQFIARFEMTVEEKTLD---LCYQMVQQGMLKH 195 Query: 200 LSSERIWSEINKLLEAKNP 218 LS ERI+ E K+L + P Sbjct: 196 LSIERIYGEYCKILMSPRP 214 >gi|332886436|gb|EGK06680.1| hypothetical protein HMPREF9456_00554 [Dysgonomonas mossii DSM 22836] Length = 478 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 7/213 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICRKKYF 89 +GG VRD + + +DIDI T + + +K + S+ ++GT +I + Sbjct: 36 IGGYVRDIFLRRASKDIDIVTIGKGIELAQAVTKALGRKAKLSVFKNFGTAQIKYKDTEI 95 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 + R + +V + D RRDFTINAL D+ G+++D GGL D+ Sbjct: 96 EFVGARKESYNRDSRKPIVEDGTLEDDQNRRDFTINALAICLNKDRFGELLDPFGGLKDM 155 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 + TI+ D +D LR+LR RF + G +I+ A + K ++I+S ERI Sbjct: 156 DSLTIRTPLDPDITFSDDPLRMLRAIRFSSQLG-FDIEPKTFDAISRNKDRIEIISRERI 214 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 E+NK++ + P + + G+ IF ++ Sbjct: 215 IDEVNKIVLSPKPSVGFLQLDQTGLLSIIFPEL 247 >gi|145612375|ref|XP_367164.2| hypothetical protein MGG_07089 [Magnaporthe oryzae 70-15] gi|145019556|gb|EDK03784.1| hypothetical protein MGG_07089 [Magnaporthe oryzae 70-15] Length = 524 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 40/219 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPD----RVMRIFSKTRYKVIPTSISYGTI----KII 83 GG VRD L+ DID+A + + R + F IS G I K+ Sbjct: 68 AGGWVRDKLLGTESHDIDVAISCMTGEAFTRELVAFCNDAANRDRHGISEGDIGNLHKVA 127 Query: 84 C---RKKYFDITT------------LRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINAL 127 + K+ + T LR + T D R ++ F + D+LRRD T+NAL Sbjct: 128 ANPDKSKHLETVTTRMFGLEVDFVNLRKETYTEDSRNPQMEFGTA-EEDALRRDATVNAL 186 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------E 179 + + +V D+VGGL D+ + I+ + +D LR+LR RF + G E Sbjct: 187 FYNIHTSEVEDFVGGLRDMDQKLIRTPLEPLQTFKDDPLRVLRLVRFASRLGFTIDPSAE 246 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 K + + ++ +++ K +S ER+ E+ K+L K+P Sbjct: 247 KTMSAPDVLEALRLK-----ISRERVGVEVEKML--KDP 278 >gi|168003453|ref|XP_001754427.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694529|gb|EDQ80877.1| predicted protein [Physcomitrella patens subsp. patens] Length = 508 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 30/232 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-------------SKTRYKVIPTS--- 74 + GG VRD L+ DIDIA L + + + F S T VI ++ Sbjct: 35 VAGGWVRDKLLGKDSADIDIA---LDNMLGKDFCEKVNDYLKSIGESTTGVGVIQSNPEQ 91 Query: 75 ---ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + T+K+ + + D LR++ + + + D+ RRD TIN+L+ + Sbjct: 92 SKHLETATMKV--KGVFVDFVNLRAETYANNSRIPTMEFGTAEQDAFRRDLTINSLFYNI 149 Query: 132 QGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++ + G+ DL+ I+ L+D LR++R RF A +G K D A Sbjct: 150 NKRSVEDLTSQGIKDLKAGIIRTPLPPKETFLDDPLRVMRAVRFGARFGFKLDDELKKAA 209 Query: 190 S---IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 S +K+ G K+ S ERI EI +L K P A+ + +F IF + Sbjct: 210 SCDEVKSALGHKV-SRERIGKEIALMLNGKKPNTAMRCLEQLQLFPVIFTSI 260 >gi|242309097|ref|ZP_04808252.1| tRNA nucleotidyl transferase [Helicobacter pullorum MIT 98-5489] gi|239524521|gb|EEQ64387.1| tRNA nucleotidyl transferase [Helicobacter pullorum MIT 98-5489] Length = 413 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 30/223 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGA+RD L+ +D D + + K K+ P + + Sbjct: 19 LVGGAIRDYLLGFPTKDKDYVAVGSDGKDFINYPKVG-KIFP---------VFLIDSHTQ 68 Query: 91 ITTLRSDLITDGRY-------AKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGL 142 I R++ T Y + +D K RRD TIN++ D Q + +ID G Sbjct: 69 IALARTETKTSNGYNGFSYQTKNITLIQDLK----RRDLTINSMALDLQTRHIIDPFNGK 124 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---NIDSDGLVASIKAKKGLKI 199 DL+N+ ++ A ED LR+LR RF A G K + + L+ ++K K LK Sbjct: 125 KDLQNKILRHTSQA---FCEDPLRVLRIARFRAKLGIKWKIHPSTKALIYTMK--KELKF 179 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 L RI+ E L KN ++ G+ +EIF + ++ Sbjct: 180 LEPNRIYQETITALSYKNSHLFFETLFELGVLEEIFPSIYTLT 222 >gi|158522765|ref|YP_001530635.1| CBS domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511591|gb|ABW68558.1| CBS domain containing protein [Desulfococcus oleovorans Hxd3] Length = 896 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 12/205 (5%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII-C 84 E + +VGG VRD ++ S +D+DI R F+ + +GT I Sbjct: 492 EYSAYVVGGFVRDLFLSRSTEDVDIVIEGDGIAFAREFAGRMKARVHYYKKFGTAVITFA 551 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVG 140 D+ + R + V K D RRDFTIN L D+ G ++D+ Sbjct: 552 DGSKIDVASARLEYYQFPAALPTVEMSSIKLDLFRRDFTINTLAVCLNPDKFGLLVDFFS 611 Query: 141 GLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL 197 D++ +TI+ + H + +ED RI R RF +G ++GL+ + + Sbjct: 612 AQRDIKEKTIRVL----HSLSFVEDPTRIFRAVRFEQRFGFTIGKMTEGLIKNAVKMEFF 667 Query: 198 KILSSERIWSEINKLLEAKNPLNAI 222 + LS R++ E+ ++LE +P+ AI Sbjct: 668 RRLSGHRVFGELRQILEEDDPVPAI 692 >gi|78188698|ref|YP_379036.1| HDIG [Chlorobium chlorochromatii CaD3] gi|78170897|gb|ABB27993.1| HDIG [Chlorobium chlorochromatii CaD3] Length = 476 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 26/235 (11%) Query: 26 EDKSC-IVGGAVRDSLMNLSVQDIDIATTILP------------DRVMRIFSKTRYKVIP 72 ED +C +VGG VRD +M D+DI T P R +F + R + Sbjct: 26 EDAACYLVGGYVRDLMMKRPCTDVDIMITGDPVPFAHMVQEELQGRNFVLFERFRTAQLE 85 Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA-- 129 + GT K+ ++ R + + + D +RRDFTINAL Sbjct: 86 LDDPNLGTFKV-------ELVGARKESYNSDSRKPITLVGTLEDDLMRRDFTINALAMRL 138 Query: 130 --DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +++ V D G+ D+ + ++ + +D LR++R RF A + + + L Sbjct: 139 NREERYTVTDLFNGMEDMEAKILRTPLEPLQTFSDDPLRMMRAARFAAQL-DFTLLPNAL 197 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 A + + I+S ER+ E K++ P ++ ++ G+ KE+ +V ++ Sbjct: 198 EAIRAMHERIHIVSMERVSHEFLKIMRTHRPSVGLLILHETGLLKELLPEVSAMA 252 >gi|82753230|ref|XP_727593.1| tRNA nucleotidyltransferase mitochondrial precursor [Plasmodium yoelii yoelii str. 17XNL] gi|23483513|gb|EAA19158.1| tRNA nucleotidyltransferase, mitochondrial precursor [Plasmodium yoelii yoelii] Length = 772 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 22/226 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKK-- 87 +VGG VRD +N+S DID+ + + K K + ++G IKI C + Sbjct: 208 VVGGWVRDKFLNISNDDIDVTVDNMKGSDFCNYIKEYIKDKENKNFNFGIIKINCDQSKH 267 Query: 88 -----------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 DI LR++ T+ + + D+LRRDFTIN+L+ + + K I Sbjct: 268 LETSSFNLFNFQVDIVNLRNEKYTEESRIPEISIGTVEEDALRRDFTINSLFYNLKNKKI 327 Query: 137 -DYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS---DGLVASI 191 DY G+ LRN I + L+D LRI+R R F Y + N++ D L Sbjct: 328 EDYTKNGIFHLRNXIISTPLNPLTTFLDDPLRIIRCIR-FCGYFDFNLNKSIFDVLKNED 386 Query: 192 KAKKGLKILSSERIWSEINKLL--EAKNPLNAIVHMYNGGIFKEIF 235 K K +S R+ SEI K+ + KN + ++ + KEIF Sbjct: 387 IKKSFNKKISKSRLASEIIKIFSHKCKNIVLSLTLLNYSNYSKEIF 432 >gi|297584686|ref|YP_003700466.1| CBS domain-containing protein [Bacillus selenitireducens MLS10] gi|297143143|gb|ADH99900.1| CBS domain containing protein [Bacillus selenitireducens MLS10] Length = 869 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 33/233 (14%) Query: 8 KWFHDSDLINILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATT----ILPDRV 59 K H DL +ILSL+ K D + ++GG VRD L+ + +D+DI +L + + Sbjct: 452 KQLH-PDLFSILSLIGKTADHLNMSAYLIGGMVRDLLLQHANEDMDIVVEGDGIVLAEEL 510 Query: 60 -------MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD 112 +R ++ R Y R +Y+D KV + Sbjct: 511 KASYGGQIRTHAEFRTATWKHPAGYKIDLTSARTEYYDFP---------AALPKVELST- 560 Query: 113 WKADSLRRDFTINAL----YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 K D RRDFTINA+ + G ++DY G DL I+ + + +ED RIL Sbjct: 561 IKEDLFRRDFTINAMGICISGKEFGDLLDYFHGFEDLNKGRIRTLYNL--SFVEDPTRIL 618 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 R RF +G + D +A I++ L +S R SE++++ ++PL + Sbjct: 619 RAVRFENRFGFQMDDQTEDLA-IQSANNLLSVSKSRQSSELSRMFYEEDPLQS 670 >gi|332982085|ref|YP_004463526.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Mahella australiensis 50-1 BON] gi|332699763|gb|AEE96704.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Mahella australiensis 50-1 BON] Length = 463 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 13/224 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I L + + +VGGAVRD L+ + DIDI L + V Sbjct: 18 MTIAKRLMQAGARCYLVGGAVRDRLLGIYTTDIDIEVYGLSYEEIAQLINPILHVDLVGK 77 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD----SLRRDFTINALYAD- 130 +G +K DI R + T + T D + D S RRDFTINA+ D Sbjct: 78 QFGVLK--AHGHDIDIALPRIEKNTGAGHRDFDVTVDPELDIYQASRRRDFTINAIMLDL 135 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ID GGL DL + ++ + D + +D LR+ R +F E I + L + Sbjct: 136 STMEIIDPHGGLKDLESHVLRHVDD--NTFADDPLRVYRAMQFAGRL-EYTIAPETL--A 190 Query: 191 IKAKKGLKILSSERIWSEINK-LLEAKNPLNAIVHMYNGGIFKE 233 + L ERI++E K LL+AK P + +M + G+ ++ Sbjct: 191 LCRHVDTTALPKERIYNEFKKLLLQAKRPSMGLKYMPDLGLIQQ 234 >gi|50306057|ref|XP_452990.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642123|emb|CAH01841.1| KLLA0C17688p [Kluyveromyces lactis] Length = 489 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 109/263 (41%), Gaps = 41/263 (15%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-------------TTILPDRVMRIFSKTRYKVIPTSISY 77 I GG VRD L+ D+DIA L DR + S I + S Sbjct: 43 ITGGWVRDKLLGNDSNDLDIAINNMTGEQFAEKLCAFLQDRGLETHS---LHTIDKNPSK 99 Query: 78 GTIKIICRKKYFDIT----TLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 C K FD+ LRS+ T + R KV F + D++RRD T+NA++ + Sbjct: 100 SKHLETCTTKLFDVPVDFVNLRSEEYTMESRIPKVEFGTPYD-DAMRRDATLNAMFYNIT 158 Query: 132 QGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + K+ D+ G DL + ++ ++D LR+LR RF + + N D Sbjct: 159 EDKIEDFTKKGFQDLNDGILRTPLPPRQTFIDDPLRVLRLIRFASRF---NFQIDPQTYQ 215 Query: 191 IKAKKGLKI-----LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 G+ +S R+++E++K L + NP A+ + G + E S Sbjct: 216 AMRDPGIHQSFNHKISKGRVYTEMHKTLTSANPFYAL-DLIQGAHLSRVIFTTNESS--- 271 Query: 246 LSQVIEAEQVFEWKIDSLLRFIV 268 E E ++E +D L+ +V Sbjct: 272 ----PEIESIYE-NLDQHLKSLV 289 >gi|167469895|ref|ZP_02334599.1| poly(A) polymerase [Yersinia pestis FV-1] Length = 399 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 13/211 (6%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFS-----KTRYKVIPTSISYGTIKIICRKKYFDI 91 RD L+ +D D ++ P++V ++F R+++ I++ + + + Sbjct: 1 RDLLLGRKPKDFDTISSATPEQVRKLFRICRLVGRRFRLAHVMFGPEIIEVATFRGHHEQ 60 Query: 92 TTLR-SDLITDGRYAKVVFTRD-----WKADSLRRDFTINALYAD-QQGKVIDYVGGLND 144 SD + + + RD + D+ RRDFTIN+LY + DY GGL D Sbjct: 61 QQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRD 120 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ I+ IGD R ED +R+LR RF A + +I + + L+ + R Sbjct: 121 LKEGIIRLIGDPETRYREDPVRMLRAVRFAAKL-DMSISPETAEPIPRLASLLREIPPAR 179 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ E KLL++ + + +F+ +F Sbjct: 180 LFEESLKLLQSGYGYKTYLKLCEYQLFQPLF 210 >gi|302391954|ref|YP_003827774.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acetohalobium arabaticum DSM 5501] gi|302204031|gb|ADL12709.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acetohalobium arabaticum DSM 5501] Length = 469 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 36/175 (20%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI-- 75 ++ +LN+ K +VGG +RD L+ ++DID+A + D+V RI ++ ++ Sbjct: 7 LVEILNQHNIKGYLVGGIIRDYLLEREIKDIDVA---INDKV-RIIARKFADLVTGGFVV 62 Query: 76 ---SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-- 130 T +++ + +D+ + D I + D L RDFTINAL +D Sbjct: 63 LDKKRDTYRVVTEELNYDLAPIIGDSIYE--------------DLLGRDFTINALASDID 108 Query: 131 ---------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 G++ID GG +DL+ +TI+ I + ED LR+LR RF A Sbjct: 109 GIDLDKDRGLSGEIIDPTGGRSDLKEKTIRAINKETFK--EDPLRLLRGVRFRAE 161 >gi|322419451|ref|YP_004198674.1| polunucleotide adenylyltransferase region [Geobacter sp. M18] gi|320125838|gb|ADW13398.1| Polynucleotide adenylyltransferase region [Geobacter sp. M18] Length = 873 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 17/232 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKKY- 88 VGG VRD L+ D+D+ T+ D ++ F+ + + +GT I+ + Sbjct: 480 VGGFVRDLLLGQENADVDV--TVDGDGILFAETFAAEFDCRVKSHEKFGTAVIVFPDGFK 537 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGKVIDYVGGLND 144 D+ + R + V K D RRDFT+N +L + GK+IDY G D Sbjct: 538 VDVASTRLEYYVSPAALPTVERSSLKMDLYRRDFTVNTLAISLNSQSFGKLIDYFGAYRD 597 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSE 203 L+ R I+ + + +ED R+ R RF K ++ L+ + L L Sbjct: 598 LQARVIRVLHNLS--FVEDPTRVFRAIRFEQRLNFKIAKHTEDLIKNAVKMDFLVKLGGR 655 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EISLDQLSQVI 250 R+ SE+ ++L K PL I M + G+ + I +++ +++L+++ V+ Sbjct: 656 RLLSELVQILMEKEPLKGIGRMASLGLLRFIHPNIELTAQLQVTLEEVRYVV 707 >gi|323305310|gb|EGA59057.1| Cca1p [Saccharomyces cerevisiae FostersB] Length = 192 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 17/160 (10%) Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLR 146 D LRS+ T+ R KV F + D+LRRD T+NAL+ + +G+V D+ GL DL+ Sbjct: 34 DFVNLRSEKYTELSRIPKVCFGTP-EEDALRRDATLNALFYNIXKGEVEDFTKRGLQDLK 92 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI-----LS 201 + ++ A L+D LR+LR RF + + N D V + + + +S Sbjct: 93 DGVLRTPLPAKQXFLDDPLRVLRLIRFASRF---NFTIDPEVMAEMGDPXINVAFNSKIS 149 Query: 202 SERIWSEINKLLEAKNPLNAI-----VHMYNGGIFKEIFL 236 ER+ E+ K+L PL A+ H+ N +F I + Sbjct: 150 RERVGVEMEKILVGPTPLLALQLIQRAHLENVYLFXXIMI 189 >gi|145344288|ref|XP_001416668.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576894|gb|ABO94961.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 525 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 20/214 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIA--TTILPDRVMRIFSKTRYKVIPT------------SIS 76 + GG VRD L+ DID+A T + + ++ + + + T S Sbjct: 52 VAGGWVRDKLVGRESDDIDVALDTMLGKEFAEKVNAYLEAQGMETKGIGVIQSNPEQSKH 111 Query: 77 YGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGK 134 T + R + D+ LRS+ + D R ++ F K D+ RRD TINAL+ + + K Sbjct: 112 LETATMRVRDVWLDLVNLRSENYSEDSRIPEMQFGTA-KDDAFRRDLTINALFYNINEKK 170 Query: 135 VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS-IK 192 V D+ G+ DL ++ L+D LRILR RF A +G + G AS Sbjct: 171 VEDFTERGIEDLSRGVVRTPLPPRTTFLDDPLRILRAVRFAARFGFDVDEEIGASASDPD 230 Query: 193 AKKGLK-ILSSERIWSEINKLLEAKNPLNAIVHM 225 + LK +S ER E+ +L+ ++P +A+ M Sbjct: 231 VQHALKHKVSRERFGKEVLGMLKGRSPADAVALM 264 >gi|15229038|ref|NP_190452.1| polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|7576221|emb|CAB87911.1| putative protein [Arabidopsis thaliana] gi|332644940|gb|AEE78461.1| polynucleotide adenylyltransferase domain and RNA recognition motif-containing protein [Arabidopsis thaliana] Length = 881 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 18/160 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTSISYGTIKIICR 85 +VGG VRD ++ + +D DI T+ V+R FS+ ++ + I I++ Sbjct: 96 LVGGCVRDLILKRTPKDFDILTSAELREVVRSFSRCEIIGKKFPICHVHIGNDMIEVS-- 153 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR------RDFTINALYADQQGKVI-DY 138 +T + + + R + DS+R RDFTIN L D KVI DY Sbjct: 154 ----SFSTSAQNSLRNTRTGSGKSNGSYDEDSIRFNNCLQRDFTINGLMFDPYAKVIYDY 209 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +GG+ D++ ++ + A ED RILR R A G Sbjct: 210 LGGIEDIKKAKVRTVFHAGTSFQEDSARILRGTRIAARLG 249 >gi|78067847|ref|YP_370616.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia sp. 383] gi|123567439|sp|Q39C44|CCA_BURS3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|77968592|gb|ABB09972.1| metal dependent phosphohydrolase [Burkholderia sp. 383] Length = 413 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 26/221 (11%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P+++ + K P + T +++Y Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQMAAQGFRPVGKDFPVFLHPRT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD T+NA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTVNAMAREVSPEGELVGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + + DA +ED +RILR RF A + + + + L+ + + Sbjct: 118 GQADLRARVFRHVSDA---FVEDPVRILRIARFAARFADFTVADETLALMRRMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L ER+W EI + L+EAK P + G I +V Sbjct: 175 ALVPERVWQEIARGLMEAK-PSRMFAVLRECGALARILPEV 214 >gi|302828254|ref|XP_002945694.1| hypothetical protein VOLCADRAFT_115637 [Volvox carteri f. nagariensis] gi|300268509|gb|EFJ52689.1| hypothetical protein VOLCADRAFT_115637 [Volvox carteri f. nagariensis] Length = 220 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 20/180 (11%) Query: 18 ILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTR 67 + ++ + G D S GG VRD L+ DIDIA ++ + + + R Sbjct: 19 LAAVRHAGADTSLRCAGGWVRDKLLGRDSDDIDIALDNMLGKDFADLVNEYLKSQGREAR 78 Query: 68 YKVI-----PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRD 121 + + S T ++ + + D+ LRS+ D R + F + D++RRD Sbjct: 79 HAAVIQSNPDQSKHLETARMKIGEMWIDLVNLRSETYAADSRIPSMTFGTP-EQDAMRRD 137 Query: 122 FTINALYAD--QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 FTINAL+ + Q+G V D G GL DLR+ I+ L+D LR+LR RF +G Sbjct: 138 FTINALFYNITQRGVVEDLTGRGLQDLRDGLIRTPLPPRETFLDDPLRVLRAVRFGTRFG 197 >gi|315638520|ref|ZP_07893696.1| polyA polymerase family protein [Campylobacter upsaliensis JV21] gi|315481364|gb|EFU71992.1| polyA polymerase family protein [Campylobacter upsaliensis JV21] Length = 370 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 23/232 (9%) Query: 14 DLINILSL----LNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRY 68 DLIN L L ++ +VGG+VRD + L ++D DI I P++ + K Sbjct: 7 DLINKLQFISDFLRPHTQRAYLVGGSVRDYFLGLELRDFDIEVYDISPEKFDLLMQKL-- 64 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINA 126 + YG + + + +D+ R++ + + +V D + RRDFT+NA Sbjct: 65 ----GANGYGKSFFVYKFQNYDLALARTENKSAPGHKGFEVQICNDEALAAKRRDFTLNA 120 Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 L + G+++D+ GG DL+ ++ I D +ED LR+LR F + + Sbjct: 121 LMINIFSGELLDFYGGFEDLKGGILRHIDDKS--FMEDSLRVLRAVGFVSRFKFYLAPQ- 177 Query: 186 GLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S+ K + I LS +RI +E+ K + ++ A + + G+ K++F Sbjct: 178 ----SLNLMKTMDISDLSEDRINAELYKFFKGEHLALAYKTLQDLGLEKQLF 225 >gi|288553438|ref|YP_003425373.1| polyA polymerase family protein [Bacillus pseudofirmus OF4] gi|288544598|gb|ADC48481.1| polyA polymerase family protein [Bacillus pseudofirmus OF4] Length = 845 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 96/408 (23%), Positives = 164/408 (40%), Gaps = 53/408 (12%) Query: 17 NILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++L L+ + D+ + +VGG VRD L+ +D+D+ + + + I Sbjct: 452 HLLKLIGREADRFGVNAYLVGGFVRDLLLKRPNEDLDVVIEGDGIEFANVLAASNGGSIK 511 Query: 73 TSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 ++GT DI T R++ + +V + + D RRDFTINA+ Sbjct: 512 KHDTFGTATWTTPDDMKIDIVTCRTEYYAETASLPIVRSSNIHEDLTRRDFTINAMAMSI 571 Query: 132 Q----GKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEKNIDSD 185 GK++D G+ DL+ + I+ + H I +ED RI R RF +G +I+ + Sbjct: 572 SEHSFGKLLDEYQGIEDLKAKKIRIL----HPISFIEDPTRIFRAVRFAVRFG-YSIEGE 626 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + A L LS +R+ E+ + + L A + ++K +F S Q Sbjct: 627 TARLAQSAMSHLFSLSQQRLRQELTLIHKEAKDLEAFYLLDTLNVWKTLFQKELPASSWQ 686 Query: 246 LSQVIEAEQVFEWKIDSLLRFIV-----LISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 AE+VF+ ++ + L +W++ + M K + F Sbjct: 687 Y-----AERVFKQSGHTVFHILTALASPLSNWREMIQLYIMTAKERV-----------FI 730 Query: 301 CNFNQ-KTLSIPEIKKLF----YLYGDKVMIAKLKIFLALHYNNL-THQDTCFILQVLSD 354 N+ K I EIK + YLY V L+ +L TH D F + Sbjct: 731 EQLNELKQAPIEEIKSIGELHRYLYA--VHDETLRFYLLDPTQRFHTHLDDYFKKR---- 784 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 +K LTGDD++K PG + L + + +N +E Sbjct: 785 ----QKISLYLTGDDLIKLDFKPGPHFRDYLFELEIKQLNGEISSKEE 828 >gi|300708561|ref|XP_002996457.1| hypothetical protein NCER_100453 [Nosema ceranae BRL01] gi|239605761|gb|EEQ82786.1| hypothetical protein NCER_100453 [Nosema ceranae BRL01] Length = 296 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 93/206 (45%), Gaps = 26/206 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + GG VRD LM ++ D+DIA +L + S I S Sbjct: 28 VAGGWVRDKLMGINSYDMDIALENITGYEFAKLLEQKFKDSMSNVNVVQINPDKSKHLET 87 Query: 82 IICRKK--YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDY 138 +CR D LR + TD R + + D+ RRD TINAL+ + K V D+ Sbjct: 88 AVCRINGILIDFVNLRCEKYTDTRIPLITIGT-AQEDAFRRDLTINALFYNLITKEVEDF 146 Query: 139 VG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF-----FAHYGE--KNIDSDGLVAS 190 G G+ D++N+ ++ D +D LRILR FRF F Y E K++++ L Sbjct: 147 TGMGIKDIKNKILRTPLDPFITFSDDPLRILRLFRFKAKLNFDIYSEIQKSLNNLDLKLH 206 Query: 191 IKAKKGLKILSSERIWSEINKLLEAK 216 +K K +S ER+ EI K++ K Sbjct: 207 LKNK-----VSKERVNIEIFKMINYK 227 >gi|320160472|ref|YP_004173696.1| hypothetical protein ANT_10620 [Anaerolinea thermophila UNI-1] gi|319994325|dbj|BAJ63096.1| hypothetical protein ANT_10620 [Anaerolinea thermophila UNI-1] Length = 892 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 101/425 (23%), Positives = 175/425 (41%), Gaps = 57/425 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--KVIPTSISYGTIK------- 81 IVGG VRD L+ D DI + R K RY +++P + +GT K Sbjct: 479 IVGGFVRDLLLGRPSLDFDIVVEGDAIHLARSLEK-RYGGRILPHT-RFGTAKWTISPIR 536 Query: 82 -----IICRKKYFDITTLRS--DLITDGR----YAKVVFTRDW---KADSLRRDFTINAL 127 ++ K D L DLI+ R Y + T + K D RRDFTIN + Sbjct: 537 EKLAGMLSEKNKIDPQELPEALDLISARREFYDYPTALPTVERSSIKLDLHRRDFTINTM 596 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G + DY GGL DL + ++ + ++D R LR RF + + +I+ Sbjct: 597 AVRLDGHHFGDLYDYWGGLRDLEQKVVRVLHSLS--FVDDPTRQLRAVRFEQRF-DFHIE 653 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-------- 235 L + + ++ LS +R+ E+N +L+ + + + G+ I Sbjct: 654 HRTLQLMDEGRPLIRHLSGDRLRHELNLILQEEKVFAMLARLQELGLLAAIHPAFGWDEG 713 Query: 236 --LDVQEISLDQLSQVIE-AEQVFEWKIDSLLRFIV-LISWQDKKSILSMAKKFSLPREI 291 +Q + + L + E E+V I L ++V L+ + K I A++ LP + Sbjct: 714 IRPAMQHVLREPLPESWEFPEKVANLPIRLALAYLVWLLPNPEGKGI---AERLRLPATL 770 Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351 + N +T ++ + + + A ++L + L +V Sbjct: 771 QEHWQDARTLLENHQTFQDFSASQVVKVLDEIALPALYAVYLLVENKQLK--------EV 822 Query: 352 LSDIIHWKKPLFP-LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 L I+ + ++P TGD + GIPPG + IL + W++ S E+ LL+ Sbjct: 823 LERYIYRWRFVYPQTTGDTLKAMGIPPGPEYREILWQLRAAWLDGRVN-SVEEEQALLQC 881 Query: 411 LIASS 415 L++S+ Sbjct: 882 LLSSA 886 >gi|148264296|ref|YP_001231002.1| CBS domain-containing protein [Geobacter uraniireducens Rf4] gi|146397796|gb|ABQ26429.1| CBS domain containing protein [Geobacter uraniireducens Rf4] Length = 875 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 25/241 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKIICRKKY- 88 VGG VRD L+N DID+ T+ D ++ FS + + +GT I+ + Sbjct: 480 VGGFVRDLLLNNENYDIDV--TVEGDGILFAETFSAEFGCRVKSHEKFGTAVIVFPDGFK 537 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 D+ + R + V K D RRDFTIN L + G +IDY G D Sbjct: 538 VDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTINTLAIRLNNSEFGLLIDYFGAHRD 597 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID------SDGLVASIKAKKGLK 198 L++R I+ + + +ED R+ R RF E+ +D ++ L+ + L+ Sbjct: 598 LQDRLIRVLHNLS--FVEDPTRVFRAIRF-----EQRLDFHIAKHTENLIKNAVKMDFLE 650 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE-AEQVFE 257 L +R+ +E+ +L K P A+ + G+ + I ++Q + + V+E A ++ Sbjct: 651 KLGGKRLLTELVYILREKEPFKAVERLSALGLLRFIHPELQMTA--RTRTVLEDARKIIS 708 Query: 258 W 258 W Sbjct: 709 W 709 >gi|319951891|ref|YP_004163158.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulophaga algicola DSM 14237] gi|319420551|gb|ADV47660.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulophaga algicola DSM 14237] Length = 473 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 13/220 (5%) Query: 11 HDSDLIN----ILSLLNKGEDKSC-IVGGAVRDSLMNL-SVQDIDI-ATTILPDRVMRIF 63 H+ L+N I+S K + C ++GG VRD L+ + +DIDI A + ++ Sbjct: 6 HEQALLNPIFKIISTAAKELNLDCYVIGGFVRDYLLARGTAKDIDIVAIGSGIELAKKVA 65 Query: 64 SKTRYKV-IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 SK + K + ++GT I + R + + VV + D RRDF Sbjct: 66 SKLKGKPEVSVFKNFGTAMIKYEDIELEFVGARKESYHEDSRKPVVEDGSLEDDQKRRDF 125 Query: 123 TINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINAL G ++D G+ DL ++ IK +D LR++R RF Sbjct: 126 TINALAISLNEPTYGTLLDPFNGIQDLEDKIIKTPLAPGITYSDDPLRMMRAIRFATQLD 185 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 K I+ L A + K +KI+S ERI E++K+L +K P Sbjct: 186 FK-IEDISLNAITEHKDRIKIISKERIVDELHKILASKIP 224 >gi|262044810|ref|ZP_06017853.1| polyA polymerase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010451|ref|ZP_08306754.1| polynucleotide adenylyltransferase [Klebsiella sp. MS 92-3] gi|259037779|gb|EEW39007.1| polyA polymerase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534553|gb|EGF61137.1| polynucleotide adenylyltransferase [Klebsiella sp. MS 92-3] Length = 353 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 7/146 (4%) Query: 96 SDLITDGRYAKVVFTRD-----WKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRT 149 +D +T R + RD + D+ RRDFTIN+LY V DYVGG+ DL++ Sbjct: 21 TDRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGV 80 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 I+ IG+ R ED +R+LR RF A I + + L + R++ E+ Sbjct: 81 IRLIGNPETRYREDPVRMLRAVRFAAKLN-MTISPETAEPLPRLAALLHDVPPARLFEEV 139 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIF 235 KLL+A + + +F+ +F Sbjct: 140 LKLLQAGYGYQTYMLLREYSLFQPLF 165 >gi|302698537|ref|XP_003038947.1| hypothetical protein SCHCODRAFT_47611 [Schizophyllum commune H4-8] gi|300112644|gb|EFJ04045.1| hypothetical protein SCHCODRAFT_47611 [Schizophyllum commune H4-8] Length = 245 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 26/178 (14%) Query: 23 NKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-----TRYKVIPTSIS 76 KG + SC I GG VRD L+ DID+A L D + F++ + + +P + Sbjct: 42 EKGINTSCRIAGGWVRDKLLGSQSNDIDVA---LSDVLGLTFAEHLSEFAKSRGVPVG-T 97 Query: 77 YGTIKI-----------ICRKKYF--DITTLRSD-LITDGRYAKVVFTRDWKADSLRRDF 122 G IK C+ + D+ LRS+ TD R + D+LRRD Sbjct: 98 IGEIKANPNQSKHLATATCKIHGYAIDLVNLRSEQYATDSRIPTGMAFGTPLQDALRRDI 157 Query: 123 TINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINAL+ + + + D+ G GL+DLR+ ++ L+D LR+LR RF +G Sbjct: 158 TINALFYNIHDRAVEDHTGKGLDDLRSGIVRTPLPPRETFLDDPLRVLRCLRFATRFG 215 >gi|297744919|emb|CBI38416.3| unnamed protein product [Vitis vinifera] Length = 262 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 28/213 (13%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L LL + ++ +VGG VRD ++N + +D D+ TT ++ + F + + + Sbjct: 26 VLKLLQREGFEAYLVGGCVRDLILNKTPKDFDVITTAKLKQIKKRFRRAQI----VGRRF 81 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR-----------DWKADSLRRDFTINA 126 ++ + ++++ + KV F++ W+ + + RDFTIN+ Sbjct: 82 PICRVHVKGSVIEVSSFETVAKHGEEKEKVSFSQMPSGCDESDFNRWR-NCMHRDFTINS 140 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-----EK 180 L+ D K+ DY G+ DLR+ ++ + A ED R+LR R A G E Sbjct: 141 LFFDPFVNKIYDYANGMKDLRSLKLRTLIPAQLSFKEDCARMLRGLRIAARLGLSFSRET 200 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 L +S+K+ L RI E+N +L Sbjct: 201 ETAIRSLASSVKS------LDKSRIMLELNYML 227 >gi|94309124|ref|YP_582334.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Cupriavidus metallidurans CH34] gi|166233875|sp|Q1LS11|CCA_RALME RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|93352976|gb|ABF07065.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Cupriavidus metallidurans CH34] Length = 414 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ QD D + P + K K P + T + +Y Sbjct: 6 VGGAVRDQLLGKPSQDRDYVVVGATPADMEAAGFKPVGKDFPVFLHPHT-----KAEYAL 60 Query: 91 ITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFTINALY--ADQQ----GKVIDYVG 140 T R + Y F + D +RRD TINA+ D+ G VID G Sbjct: 61 ARTERKTAVG---YKGFAFYTGADVTLEEDLVRRDLTINAMAQAVDEHDNLVGPVIDPYG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL R + + DA ED +RILR RF A + E + + L+ I + Sbjct: 118 GQKDLAARKFRHVSDA---FAEDPVRILRVARFAARFHEFTVAPETVALMRKIVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+++ L+EAK Sbjct: 175 ALVPERVWQELSRGLMEAK 193 >gi|160871778|ref|ZP_02061910.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Rickettsiella grylli] gi|159120577|gb|EDP45915.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Rickettsiella grylli] Length = 308 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 6/102 (5%) Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFT+NALY + ++DY GGL D+ N+ ++ IG+ R ED +R+LR R Sbjct: 12 EEDAWRRDFTLNALYYNIADFSLVDYCGGLADIHNKIVRIIGEPRLRYQEDPVRLLRAIR 71 Query: 173 FFAHYGEKNIDSDGLVASIKAKKG--LKILSSERIWSEINKL 212 F G+ N D A + L+ +S R++ E+ KL Sbjct: 72 F---AGKLNFQLDKATAEPIPQLAPLLRYVSPARLFDEVLKL 110 >gi|172038295|ref|YP_001804796.1| poly(A) polymerase/tRNA nucleotidyltransferase family protein [Cyanothece sp. ATCC 51142] gi|171699749|gb|ACB52730.1| poly(A) polymerase/tRNA nucleotidyltransferase family protein [Cyanothece sp. ATCC 51142] Length = 422 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 39/234 (16%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + +VGG VRDSL+N +D+ +LP+ V+ K I + G + + +K Sbjct: 26 AYLVGGMVRDSLLNYQQNYLDL-DFVLPELVIETAKK-----ISNQYNAGFVVLDAERKI 79 Query: 89 FDITTLRSDLITDGRYAKVVF---TRDW--------KADSLRRDFTINAL-YADQQGKVI 136 A+VVF T D+ + D RRDFTINA+ Y Q +VI Sbjct: 80 ----------------ARVVFEQGTVDFAQQEGDTIETDLRRRDFTINAIAYNFHQQQVI 123 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILE-DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D + GL DL+ +TI+ I H + L+ D LR+ R +R A K ID ++ Sbjct: 124 DPLNGLEDLQTKTIRMI---HVKNLQDDPLRLFRAYRQAAQLKFK-IDPKTRQTIVQLSS 179 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + +++ER+ +E+N LL + M G+ K F + +L L ++ Sbjct: 180 LITQVATERVQTELNYLLGNSRGSYWLSEMEKDGLLKIHFPHINHDNLQLLKEI 233 >gi|322780865|gb|EFZ10094.1| hypothetical protein SINV_15615 [Solenopsis invicta] Length = 258 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 22/248 (8%) Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKK----GLKILSSERIWSEINKLLEAKNPL 219 Y+ R+FRF+ + D A+IKA K GL+ +S ERIWSE +K+L L Sbjct: 1 YIIAARYFRFYGRIMDSPDQHDE--ATIKALKENIDGLQQISGERIWSEWSKILTGNFSL 58 Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279 + + G K I L Q ++ V + Q + + + ++ +D+ ++ Sbjct: 59 ELTLKLLECGASKHIGLPEQP-DIENFRNVYQRAQSNNVTLKPISLIVSML--KDEYEMI 115 Query: 280 SMAKKFSLP---REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 + ++ L R++ FL+ +K L P K + + I + + Sbjct: 116 KLHERLKLSNSDRDLALFLVQHREYKPCEKPLK-PYQKLVLLQTMKRYEILQEYVKELFR 174 Query: 337 YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 YN +Q+L + W P FP+ G +VK+ +P K G +L+ K+ WI++ Sbjct: 175 YNG--------AMQLLDEFERWTIPKFPVNGSMLVKH-VPIQKMTGKVLIELKRIWIDAD 225 Query: 397 FQLSQEDL 404 F L+ E L Sbjct: 226 FNLTSEQL 233 >gi|168186269|ref|ZP_02620904.1| trna nucleotidyltransferase family enzyme [Clostridium botulinum C str. Eklund] gi|169295718|gb|EDS77851.1| trna nucleotidyltransferase family enzyme [Clostridium botulinum C str. Eklund] Length = 394 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 29/205 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-----------KTRYKVIPTSISYGT 79 IVGGA+RDS++N+ +DIDI P ++ + +T V I Sbjct: 31 IVGGAIRDSILNVKPKDIDICIESNPINIISKLNFVKEYKYYEKFQTSTIVFENGIEIDL 90 Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDY 138 I+ CRK+ ++ +G KV+ + + D RRDFT NA+ D + ID Sbjct: 91 IR--CRKEEYEF---------NGALPKVI-PSNIEDDLFRRDFTCNAIAYDLANDILIDP 138 Query: 139 VGGLNDLRNRTIKFI-GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GL D+ N ++ + D++ +ED RI R ++ Y K D + + ++ KK + Sbjct: 139 FNGLEDITNGIVRKVHADSY---MEDPTRIFRTIKYANRYDFKIHDKNEIREAL-LKKSM 194 Query: 198 KILSSERIWSEINKLLEAKNPLNAI 222 +S++RI EI L + + +N I Sbjct: 195 DNISNDRIMREIVSLCKEEKWINNI 219 >gi|118378166|ref|XP_001022259.1| polyA polymerase family protein [Tetrahymena thermophila] gi|89304026|gb|EAS02014.1| polyA polymerase family protein [Tetrahymena thermophila SB210] Length = 516 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 39/215 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIF-----SKTRYKVIPTSISYGTIKIICR 85 GG VRD ++ DIDI T+ ++ + + K + +I +G IK Sbjct: 38 AGGWVRDKILGQECHDIDITLDTMTGEQFINLLIDYLKEKGQEDLIS---GHGVIKSNPD 94 Query: 86 K---------KYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 K K F DI LR + T R + F + D+ RRD TIN+++ + Sbjct: 95 KSKHLETVTFKIFGYDIDIANLRHEEYTKSRIPTMKFGTPLQ-DAERRDLTINSMFYNIN 153 Query: 132 QGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ D+ G GL+DL+N+ I+ D ++D LRILR FRF Y S +V Sbjct: 154 TCQIEDFTGKGLSDLQNKIIRTPLDPTQTFIDDPLRILRTFRFATKY------SFSIVPD 207 Query: 191 -IKAKKGLKI-------LSSERIWSEINKLLEAKN 217 I+A K +I +S ERI +E+ K+L+ KN Sbjct: 208 IIEALKQEQIRISLEEKVSRERIRTELEKILKDKN 242 >gi|303286187|ref|XP_003062383.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455900|gb|EEH53202.1| predicted protein [Micromonas pusilla CCMP1545] Length = 729 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 35/313 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRV--------MRIFSKTRYKV------IPTSIS 76 + GG VRD L+ + DIDIA L R +R +T + V S Sbjct: 171 VAGGWVRDKLLGKNSTDIDIAIDSLLGREFAELVNAHLREKGETVHGVGVIQSNPDQSKH 230 Query: 77 YGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGK 134 T + + D+ LRS+ ++ R ++ F D+ RRD TINAL+ + + Sbjct: 231 LETATMRVHDVWLDLVNLRSENYSEESRIPEMTFG-SATDDAFRRDLTINALFYNINLKQ 289 Query: 135 VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVAS 190 V D+ G GL DL++ ++ L+D LRILR RF + +G + I S A Sbjct: 290 VEDFTGMGLKDLQDGVVRTPLPPKTTFLDDPLRILRAVRFASRFGFVLDDEIVSAAGDAD 349 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN-------GGIFKEIFLDVQEISL 243 ++ K+ S ER+ E++ +L +P +A+ + +F+ +F I+L Sbjct: 350 VQCALRTKV-SRERVGKEVSGMLRGPSPGDAMTLLCRFRRVLLPHCLFEVVFTPASLINL 408 Query: 244 DQLSQVIEAEQVFEWK-IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + LS + W + SL L+S +K FS E + +++ F Sbjct: 409 EALSAL--PPNTTSWACLHSLRSLDALLSAHANAGGKPWSKSFSC-EEREWLVLAAFLAP 465 Query: 303 FNQKTLSIPEIKK 315 +TL +P K Sbjct: 466 L--RTLCVPPQGK 476 >gi|220904454|ref|YP_002479766.1| polynucleotide adenylyltransferase protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868753|gb|ACL49088.1| Polynucleotide adenylyltransferase region [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 905 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 95/404 (23%), Positives = 161/404 (39%), Gaps = 43/404 (10%) Query: 32 VGGAVRDSLMNLSVQDIDI---ATTILPDRVMRIFSKTRYKVIPTSISYGTI--KIICRK 86 VGG VRD L+N + QDID+ I + + R + ++ I R+ Sbjct: 489 VGGFVRDLLLNRANQDIDLVVEGNGIALAKALAAELGGRVREHQEFLTSVVIFKDAEGRE 548 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 D+ T R + V K D RRDF+INAL + G+++D+ GG Sbjct: 549 SRIDVATARLEYYEYPAALPTVELSSIKMDLFRRDFSINALAVRLDSTPFGQLVDFFGGQ 608 Query: 143 NDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKI 199 D++ R I+ + H + +ED R LR RF Y + S+ L+ + K + Sbjct: 609 RDIKERIIRVL----HTLSFVEDPTRCLRAVRFEQRYDFRIGAGSEKLIKNAMGLKLMDR 664 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI--EAEQVFE 257 LS R++ E + + +NPL + + GI I Q+++L + I E + + Sbjct: 665 LSGPRLFHEFKLICDEENPLACLERLDQLGILPAI---AQQLALTPGKRKILEELQDMLS 721 Query: 258 W-------KIDS--LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS--------FFN 300 W K+ L+ F+ L + ++ LP R ++ Sbjct: 722 WYRLLYFEKMPQPWLVYFLGLCHGLPYVETSVLYRRMGLPENKRNDILGQREQMRTVRGR 781 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 QK + E K+ L+G ++A L + L+ T+ D + I W+ Sbjct: 782 LENRQKRQGVQEF-KVSVLHG---LLAPLSLESLLYLMAETN-DEGLQKNLSRYITQWRH 836 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 +TG+D+ G+ PG IL Q ++ +E L Sbjct: 837 EKVDITGEDLKNMGLSPGPLFSQILRAVLQAKLDGETPGREEQL 880 >gi|300705511|ref|YP_003747114.1| tRNA nucleotidyl transferase [Ralstonia solanacearum CFBP2957] gi|299073175|emb|CBJ44533.1| tRNA nucleotidyl transferase [Ralstonia solanacearum CFBP2957] Length = 429 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ L VQD D + P + +T K P + + + Sbjct: 25 VGGAIRDTLLGLPVQDRDYVVVGATPAAMEARGFRTVGKDFPV--------FLHPRTQAE 76 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y V + D + D +RRD TINA+ G V+D G Sbjct: 77 YALARTERKTAAGYKGFSVYYAPDVTLEDDLVRRDLTINAMAQRVAEDGALVGPVVDPYG 136 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLK 198 G DL R + + +A ED +RILR RF A + + ++ +++ L+ + + Sbjct: 137 GQADLAARAFRHVSEA---FAEDPVRILRVARFAARFADFHVAPETNALMQRMVEAGEVD 193 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E + L+EA+ Sbjct: 194 ALVPERVWQEFARGLMEAR 212 >gi|270158657|ref|ZP_06187314.1| multifunctional CCA protein [Legionella longbeachae D-4968] gi|269990682|gb|EEZ96936.1| multifunctional CCA protein [Legionella longbeachae D-4968] Length = 382 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 44/284 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + +D D + D ++++ YK +P + + + Sbjct: 5 LVGGAVRDKLLGFAPKDNDWLVVGGTRDEMLKL----GYKPVPNNHGTSEFPVFLHPETK 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKA------DSLRRDFTINALY----ADQQGKVIDYV 139 + L + L Y F D + D RRD TINA+ ++ G++ID Sbjct: 61 EEYAL-ARLEERTGYGHGGFEFDTSSSITIVDDLKRRDLTINAMAFPVEDEKMGELIDPY 119 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLK 198 G DL NR ++ I A ++D LR++R RF A G E ++ L+ + + + Sbjct: 120 NGKVDLENRILRHISPA---FIDDPLRLIRTARFAACLGFEVAAETMELMTQMVIEGKVS 176 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQL---------SQ 248 L +ERIW E+ + ++ +P E F DV ++ S D++ Sbjct: 177 ELRNERIWMEMERAIKGPHP--------------EKFFDVLKKCSADRILFPYIKTPGPG 222 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 + ++ + K + +RF L+ ++ + K+F+L + R Sbjct: 223 INAMQRAADHKNSAPVRFAALMLDLTQEEVTKFCKQFNLSNQYR 266 >gi|225425222|ref|XP_002266814.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296088167|emb|CBI35659.3| unnamed protein product [Vitis vinifera] Length = 537 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 14/171 (8%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L+ L K + +VGG VRD ++ + +D DI T+ V+R F R +V+ Sbjct: 91 VLNGLKKKGYEVYLVGGCVRDLILKRTPKDFDIITSAELKEVLRAF--PRCEVVGKRFPI 148 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD---------SLRRDFTINALY 128 + + ++++ + GR + R D L+RDFTIN L Sbjct: 149 CHVHV--NDTIVEVSSFSTSGKRTGRKLDYILRRPPDCDDHDYIRWRNCLQRDFTINGLM 206 Query: 129 ADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D K++ DY+GG+ D++ ++ + A+ +ED RILR R A G Sbjct: 207 FDPYTKIVYDYMGGMQDIKKAKVRTVIPANISFVEDCARILRGVRIAARLG 257 >gi|289166530|ref|YP_003456668.1| multifunctional tRNA nucleotidy [Legionella longbeachae NSW150] gi|288859703|emb|CBJ13673.1| multifunctional tRNA nucleotidy [Legionella longbeachae NSW150] Length = 382 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 44/284 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + +D D + D ++++ YK +P + + + Sbjct: 5 LVGGAVRDKLLGFAPKDNDWLVVGGTRDEMLKL----GYKPVPNNHGTSEFPVFLHPETK 60 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKA------DSLRRDFTINALY----ADQQGKVIDYV 139 + L + L Y F D + D RRD TINA+ ++ G++ID Sbjct: 61 EEYAL-ARLEERTGYGHGGFEFDTSSSITIVDDLKRRDLTINAMAFPVEDEKMGELIDPY 119 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLK 198 G DL NR ++ I A ++D LR++R RF A G E ++ L+ + + + Sbjct: 120 NGKVDLENRILRHISPA---FIDDPLRLIRTARFAACLGFEVAAETMELMTQMVIEGKVS 176 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQL---------SQ 248 L +ERIW E+ + ++ +P E F DV ++ S D++ Sbjct: 177 DLRNERIWMEMERAIKGPHP--------------EKFFDVLKKCSADRILFPYIKTPGPG 222 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 + ++ + K + +RF L+ ++ + K+F+L + R Sbjct: 223 INAMQRAADHKNSAPVRFAALMLDLTQEEVTKFCKQFNLSNQYR 266 >gi|167040202|ref|YP_001663187.1| polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X514] gi|300914286|ref|ZP_07131602.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X561] gi|307724478|ref|YP_003904229.1| polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X513] gi|166854442|gb|ABY92851.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X514] gi|300889221|gb|EFK84367.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X561] gi|307581539|gb|ADN54938.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X513] Length = 388 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 48/296 (16%) Query: 14 DLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---- 68 DLI +L + +K + KS IVGG VRD L L V+++DI + D + ++ Y Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFL--LGVKNLDIDVVVEGDGIKFAYTLLSYLKGD 66 Query: 69 -----KVIPTSISYGTIK---IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 ++SY +I I RK+Y++ + F+ + D RR Sbjct: 67 IVVYEAFRTATLSYDSISIDVISARKEYYE---------RPAALPTIEFSNIYD-DMARR 116 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHR-ILEDYLRILRFFRFFAHYG 178 DFTIN L D + K++DY GL DL+ FI H + ++D RI R R+ Y Sbjct: 117 DFTINTLAYDVIEEKILDYFNGLEDLKK---GFIRVLHPKSFIDDPTRIFRAIRYATRYS 173 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-- 235 E + L+ ++ + +++LS++RI +EI +L+ I + + GI K IF Sbjct: 174 FEIEEKTHNLMK--ESIENIRLLSADRIRNEIFLILKESKVKEMIEKLISYGIDKVIFDG 231 Query: 236 --LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289 L+ Q +LD + +E E L RF+VL + + I + K+ + + Sbjct: 232 ITLNTQ--NLDTVDVNLEVE---------LYRFLVLFYYLKESDINKIEKRLRVNK 276 >gi|289209615|ref|YP_003461681.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thioalkalivibrio sp. K90mix] gi|288945246|gb|ADC72945.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thioalkalivibrio sp. K90mix] Length = 410 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 20/221 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ V + D + P+ + + + P + T Sbjct: 2 QTYLVGGAVRDRLLGRPVHERDYVVVGATPEAMEAAGYRPVGRDFPVFLHPTT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y F + D RRD TINA+ D G + D G Sbjct: 55 -HEEYALARTERKTARGYHGFQFNAAPDVTLEDDLERRDLTINAMAEDADGHLFDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED +R+LR RF A D+ L+ + + Sbjct: 114 ADLEARLLRHVSPA---FSEDPVRLLRVARFAAQLEPWGFRVADDTRELMRELVTSGEVD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L ER+W+E K L++ P I + + G +F +++ Sbjct: 171 ALVPERVWAECEKALKSPAPRRFIEVLRDAGALARLFPEIE 211 >gi|188590992|ref|YP_001795592.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Cupriavidus taiwanensis LMG 19424] gi|226702046|sp|B2AGH1|CCA_CUPTR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|170937886|emb|CAP62870.1| tRNA nucleotidyl transferase [Cupriavidus taiwanensis LMG 19424] Length = 415 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ QD D + P + + K P + T +++Y Sbjct: 6 VGGAIRDELLGKPSQDRDYVVVGATPAEMEAAGYRPVGKDFPVFLHPRT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALY----ADQQ--GKVIDYVG 140 R++ T Y F + + D +RRD TINA+ AD G VID G Sbjct: 59 -ALARTERKTAMGYKGFAFYCEPDVTLEDDLVRRDLTINAMARAVDADGNLTGPVIDPHG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLK 198 G DL R + + DA ED +RILR RF A + + N+ ++ L+ + A + Sbjct: 118 GQRDLAARLFRHVSDA---FAEDPVRILRLARFAARFHDFNVAAETMRLMREMVAAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EA+ Sbjct: 175 ALVPERVWQELARGLMEAR 193 >gi|282901989|ref|ZP_06309887.1| Phosphoesterase, RecJ-like protein [Cylindrospermopsis raciborskii CS-505] gi|281193076|gb|EFA68075.1| Phosphoesterase, RecJ-like protein [Cylindrospermopsis raciborskii CS-505] Length = 912 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 59/249 (23%) Query: 31 IVGGAVRDSLM------NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIP 72 +VGGAVRD L+ L + DID+ A L + +I+ +R ++ Sbjct: 488 LVGGAVRDLLLENDPSNQLMLHDIDLVVDGFHQSADVGAGVELARELQQIYQNSRLEI-- 545 Query: 73 TSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ T ++ K + DI T R++ V + D RRDFTINA Sbjct: 546 -HGAFQTAALLWHKDPELDCLWVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINA 604 Query: 127 ----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF--------- 173 L + G+++D+ GGL DLR+R I+ + + +ED RI R RF Sbjct: 605 MALRLTSPHGGELLDFFGGLIDLRSRKIRVLHP--NSFIEDPTRIYRGVRFAIRFGFAIE 662 Query: 174 -----FAHYG----------EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + HY ++NI + L +KA+ LK++ W KLL+ Sbjct: 663 QRTAEYIHYAINSGVYDRTVQENIKTPALHTRLKAE--LKLILQAPYWQSALKLLDQLGA 720 Query: 219 LNAIVHMYN 227 L I + N Sbjct: 721 LQCIHYTCN 729 >gi|116748126|ref|YP_844813.1| polynucleotide adenylyltransferase region [Syntrophobacter fumaroxidans MPOB] gi|116697190|gb|ABK16378.1| Polynucleotide adenylyltransferase region [Syntrophobacter fumaroxidans MPOB] Length = 888 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 25/253 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRK 86 K+ VGG VRD L+ S DIDI R +++ + T + I Sbjct: 481 KAYAVGGFVRDLLLRRSNLDIDIVVEGDGIEFARTYAREHGIRCRFHKKFNTAVLIFPDD 540 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGKVIDYVGGL 142 + D+ + R + +V K D RRDFTIN AL + G++ID+ GG Sbjct: 541 RRVDVASARFEYYQYPAALPIVEFSSLKMDLYRRDFTINTLALALNPGEFGQLIDFFGGQ 600 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL+++TI+ + + ++ED RILR RF +G + + L+ + L+ L Sbjct: 601 RDLKDKTIRVLHNLS--LVEDPTRILRAIRFEQRFGFRIGKQTVALIRNAVRMGLLQKLG 658 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 R+ EI ++ +PL + M ++ V+ A +F+ K++ Sbjct: 659 GRRLLHEIQLIMVEDDPLPPLRRMNEFAVWP----------------VLSANILFDQKLE 702 Query: 262 SL-LRFIVLISWQ 273 L +R ++SW Sbjct: 703 DLFVRLREVVSWH 715 >gi|310779055|ref|YP_003967388.1| CBS domain containing protein [Ilyobacter polytropus DSM 2926] gi|309748378|gb|ADO83040.1| CBS domain containing protein [Ilyobacter polytropus DSM 2926] Length = 857 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 76/311 (24%), Positives = 138/311 (44%), Gaps = 51/311 (16%) Query: 14 DLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIAT------------TILPD 57 DLI++L + K ++K +VGG VRD ++ + +DIDI L Sbjct: 454 DLIDLLKAIEKIAKKRKEKVYMVGGIVRDIILGIPNKDIDIVVEGEGIAFAWDLKNELNG 513 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW---K 114 + + K + V+ I+ + D+ T R + Y + + D+ + Sbjct: 514 EKIVVHEKFKTAVV----------IVDKDLKIDVATSRVEYY---EYPTSLPSVDYGSIR 560 Query: 115 ADSLRRDFTIN--ALYADQQ--GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 D RRDFTIN AL D Q G+++D+ G D++NR I+ + + +ED RI+R Sbjct: 561 EDMYRRDFTINSLALEVDYQKFGELVDFFNGYRDIQNREIRIL--HNFSFVEDPTRIIRA 618 Query: 171 FRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 FRF + Y K +++ + LK +S R+ +E +L KNP A+ + Sbjct: 619 FRFASRYDFKIEEETERFLKDAVENGFLKKISWPRVKNEFKIILGDKNPEKALNFLEKYD 678 Query: 230 IFKEIFLDVQEI--------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281 + K I +++ L+ L ++ ++ +W ++ F++L+ I + Sbjct: 679 VLKNIHHNIKLTEKMKKHLEELNSLGEMFSQLKLKKW----IMAFLILMEDLKSDEIELI 734 Query: 282 AKKFSLPREIR 292 KFS ++ R Sbjct: 735 FNKFSFSQDFR 745 >gi|167755024|ref|ZP_02427151.1| hypothetical protein CLORAM_00528 [Clostridium ramosum DSM 1402] gi|167705074|gb|EDS19653.1| hypothetical protein CLORAM_00528 [Clostridium ramosum DSM 1402] Length = 451 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 13/200 (6%) Query: 28 KSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 ++ +VGG VRD L+ + D+D+ L + V S+G +K+ Sbjct: 24 RAFLVGGIVRDMLIYNRVDYHDVDVEVYGLSVDELEELLANYGNVNSIGKSFGILKLDVL 83 Query: 86 KKYFDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINAL-YADQQGKVIDYVG 140 FD R+++ T + T D K + RRD TINAL Y + GK+ D+ Sbjct: 84 PN-FDFALPRTEIKTGESHQDFDVTVNQNLDLKVAASRRDLTINALMYEIKTGKIYDFFH 142 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLK 198 G D+ RT++ + + +ED LR+LR + FA + I++ + + K L Sbjct: 143 GQEDIEKRTLRMVSET--TFIEDPLRVLRTAQ-FASRLDFCIETATKLMCKKMVQNKSLD 199 Query: 199 ILSSERIWSEINKLLEAKNP 218 LS ER++ E +KLL ++ P Sbjct: 200 KLSKERVFQEYSKLLLSQQP 219 >gi|153872944|ref|ZP_02001693.1| polyA polymerase [Beggiatoa sp. PS] gi|152070589|gb|EDN68306.1| polyA polymerase [Beggiatoa sp. PS] Length = 314 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTINALY D ++DY GL+DL+ I+ IG R ED +R+LR RF Sbjct: 9 DAWRRDFTINALYYDISDFSLLDYANGLSDLQAGIIRLIGKPKLRYQEDPVRMLRAIRFS 68 Query: 175 AHYGEKNIDSDGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 A N A + + G L + R++ E+ KL + + + V + +FK Sbjct: 69 AKL---NFTIAPETAELIPQLGGLLANIPPARLFEEVLKLFLSGHAEQSFVELQRYNLFK 125 Query: 233 EIF 235 +F Sbjct: 126 HLF 128 >gi|78187013|ref|YP_375056.1| polyA polymerase family protein [Chlorobium luteolum DSM 273] gi|78166915|gb|ABB24013.1| polyA polymerase family protein [Chlorobium luteolum DSM 273] Length = 475 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 31/248 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI---------ATTI---LPDRVMRI 62 L I + ++ + +VGG VRD LM DIDI A T+ L R + Sbjct: 9 LFRIGEIADRSQMGCYLVGGYVRDMLMQRPCTDIDIMVLGDPVPFAKTVQKELGGRNFVL 68 Query: 63 FSKTRYKVI----PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 F + R + P ++ + RK+ ++ + + + + D Sbjct: 69 FERFRTARLELPDPEGATFTLELVGARKESYNHDSRKP----------ITLKGTLEDDLS 118 Query: 119 RRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL + +G ++D G DL + ++ +D LR++R RF Sbjct: 119 RRDFTINALALVLNHEGRGTIVDQHCGREDLEKKILRTPLAPLQTYSDDPLRMMRTARFA 178 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G + + A + ++I+S+ER SE K++++ P + ++ G+ EI Sbjct: 179 AQLGFTPA-PEAVAAMATMHERIRIVSAERTSSEFLKIMQSPEPSVGLKLLHETGVLAEI 237 Query: 235 FLDVQEIS 242 + ++ Sbjct: 238 LPETAAMA 245 >gi|71745142|ref|XP_827201.1| tRNA nucleotidyltransferase [Trypanosoma brucei TREU927] gi|70831366|gb|EAN76871.1| tRNA nucleotidyltransferase, putative [Trypanosoma brucei] Length = 441 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 116 DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+LRRD+T+NAL+ + K V DY GL DL R ++ D + +D LR+LR RF Sbjct: 59 DALRRDYTVNALFYNLHTKEVEDYTTGLEDLDRRILRCPLDPKETLTDDPLRLLRGVRFV 118 Query: 175 AHYGEKNIDSDGLVASIKAKKGLK----ILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 GE D + K+ LK +S ER+ E+ K+L I ++ + Sbjct: 119 GQLGELGFVLDESIFRCVDKELLKKVTLKVSRERVGKELVKMLSGPFAEKCIETLHELNL 178 Query: 231 FKEIFL 236 +E+ L Sbjct: 179 LREVIL 184 >gi|126657310|ref|ZP_01728469.1| polyA polymerase [Cyanothece sp. CCY0110] gi|126621297|gb|EAZ92009.1| polyA polymerase [Cyanothece sp. CCY0110] Length = 905 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 97/406 (23%), Positives = 172/406 (42%), Gaps = 71/406 (17%) Query: 31 IVGGAVRDSLMNLS-----VQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 IVGGAVRD L+ + +QDID+ A L + + +S R V Sbjct: 490 IVGGAVRDLLLTQNNEKVLLQDIDLVVDGFHRSADVGAGVELASSIQKKYSNCRLSV--- 546 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T ++ K + DI T R++ V + D RRDFTINAL Sbjct: 547 HGEFQTAALLWHKDPEFGSLWLDIATSRTEFYPYPAANPEVEASSIRQDLYRRDFTINAL 606 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH------- 176 ++G+++D+ GG+ DL+ + ++ + + +ED RI R RF Sbjct: 607 AVRLTPPREGELLDFFGGILDLKAKEVRVL--HANSFIEDPTRIYRAVRFAVRLNFEIEP 664 Query: 177 ----YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK---------NPLNAIV 223 Y I+S G+ ++ K + + R+ +E+ +LEA + L+A+ Sbjct: 665 QTEAYIRYAIES-GIYEKLRLKNHVAPALTTRLKAELKYILEANYWKPALQLLSDLDALK 723 Query: 224 HM-YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282 + Y + +EI+ ++ S L + + W L+R +LIS + K +A Sbjct: 724 CLHYQVTLDEEIWWQIRCAS-RWLKYLDPDNNIGHW----LIRLEILISQINFKERKQLA 778 Query: 283 KKFSLPREI--RYFLISFFNCNFNQKTLSIPEIKKLF-YLYGDKVMIAKLKIFLALHYNN 339 LP+E R +++ + + ++ ++ + + LY K+ I +A+ N Sbjct: 779 LNLQLPKESIERIKIVNILHSELQKNLINCQKVSEKYKQLYRHKLPDL---ILVAV---N 832 Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 + + I Q L+ W K PL G+D+ + G PG K +L Sbjct: 833 SSKKIRRIIWQYLT---QWSKVETPLNGNDLKRMGYKPGPKYKVVL 875 >gi|83814933|ref|YP_446535.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Salinibacter ruber DSM 13855] gi|83756327|gb|ABC44440.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Salinibacter ruber DSM 13855] Length = 594 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 28/237 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT------ILPDRVMRIFSKTRYKVIPTSISYGT-- 79 ++ VGG VRD L+ S D+D T L + V V P +GT Sbjct: 70 EAYAVGGMVRDVLLGRSTTDLDFVTVGPETGIALAEAVGEALGGRTAHVYP---KFGTAA 126 Query: 80 IKIICRKKYFD-----------ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA-- 126 I+I D + + +D R +V + D RRDFT+NA Sbjct: 127 IRIPAADALPDDHPDDALVLEFVAARKESYRSDSRKPEVEAGT-LEDDQYRRDFTVNAMA 185 Query: 127 --LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 L D+ G ++D G DL +TI D +D LR++R RF + D Sbjct: 186 IHLTPDRFGALLDPFDGRRDLERQTIDTPLDPADTFEDDPLRMIRAARFATQLEFRVSDR 245 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +A + ++ILS ERI E++K+LEA P + G+ + ++Q + Sbjct: 246 VFDAMGTQAHR-VEILSQERITEELHKMLEADTPSIGFKILEASGVLAHVMPEIQRL 301 >gi|332295589|ref|YP_004437512.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermodesulfobium narugense DSM 14796] gi|332178692|gb|AEE14381.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermodesulfobium narugense DSM 14796] Length = 468 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDID--IATTILPDRVMRIFSKTRYKVI---PTSISY 77 N + +VGGAVRD L+ + D D ++ + D + S K + S Sbjct: 11 NNAYEDVFLVGGAVRDLLIGKEISDYDFLVSEGSVSDIAKLLASNLGGKFFFLKGANYSS 70 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVI 136 TI+I+ DI+ + + + D L RDFTIN++ G + Sbjct: 71 KTIRILKEGLQIDISEPKGS--------------NLQEDLLERDFTINSMAIRMSDGALF 116 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D G+ DL N+ I+ D ++D +R++R +RF A + + G++ +A Sbjct: 117 DSAEGIRDLINKRIRLTSDLA--FIKDPVRLIRAYRFVAEMNFQLDERTGILIMEQAPL- 173 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + + SER+ EI K+L KN + + +++ GI K IF ++ Sbjct: 174 ISQVPSERVRDEIFKILNLKNSADVLYNLWKAGILKIIFPEL 215 >gi|258515317|ref|YP_003191539.1| Polynucleotide adenylyltransferase region [Desulfotomaculum acetoxidans DSM 771] gi|257779022|gb|ACV62916.1| Polynucleotide adenylyltransferase region [Desulfotomaculum acetoxidans DSM 771] Length = 877 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 10/215 (4%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-FD 90 GG VRD+L+ + D+D+ + R S+ + +GT +I D Sbjct: 483 AGGIVRDALLGVESLDVDLVVEGNGILLARALSEKSGAFLRVHEKFGTAEICFPNGLQID 542 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDLR 146 + T R + V + K D RRDFTINA L ++ G +ID G +DL Sbjct: 543 VATARVEFYEYPAALPEVESSSLKQDLYRRDFTINAMAVILGEERFGDLIDPFDGRDDLY 602 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG--LKILSSER 204 ++ + + +ED RILR RF Y I+ L +A K L+ +S ER Sbjct: 603 KGLVRVLHNLS--FVEDPTRILRALRFEQRY-HMRIEQQTLSLLRRAVKDGMLERVSVER 659 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +W E+ ++ NP+ + + ++ IF ++ Sbjct: 660 LWEELKHIMAENNPVKILQRLAEVEAWQYIFPGIE 694 >gi|121612457|ref|YP_001000478.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|121504166|gb|EAQ72343.2| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 372 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 123/265 (46%), Gaps = 41/265 (15%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69 ++ DL I L + +VGG+VRD + L + D DI I P +I K Sbjct: 10 NNPDLQFIAEFLKPYTKRVYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKL--- 66 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA- 126 + +G +C+ K +D+ R++ I+ G +V D K + RRDFTIN+ Sbjct: 67 ---GAQGFGKSFFVCKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSM 123 Query: 127 ---LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 L+ D+ +D+ GGL DL ++ I + ED LR+LR F + + K I Sbjct: 124 MINLFNDE---FLDFYGGLKDLGAGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-IT 177 Query: 184 SDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 S+ S+K + + I LS +RI +E+ K K+P + + Y +QE+ Sbjct: 178 SE----SLKLMQSMDITDLSKDRINAELCKFF--KSPRLDVGYRY-----------LQEL 220 Query: 242 SLDQLSQVIEAEQVF-EWKIDSLLR 265 L++ Q+ E VF + +LLR Sbjct: 221 GLEK--QIFGFESVFMSLEFQNLLR 243 >gi|312797514|ref|YP_004030436.1| tRNA nucleotidyltransferase [Burkholderia rhizoxinica HKI 454] gi|312169289|emb|CBW76292.1| tRNA nucleotidyltransferase (EC 2.7.7.25) [Burkholderia rhizoxinica HKI 454] Length = 414 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 65/271 (23%), Positives = 113/271 (41%), Gaps = 39/271 (14%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ VQD D + P+++M + K P + T +++Y Sbjct: 6 VGGAIRDELLGKPVQDRDYVVVGATPEQMMAQGFRPVGKDFPVFLHPRT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALY------ADQQGKVIDYVG 140 R++ T Y F D + D RRD TINA+ G VID Sbjct: 59 -ALARTERKTAAGYHGFQFFYAPDVTLEQDLARRDLTINAMARAVLPDGTLHGPVIDPFN 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL+ R + + DA ED +RILR RF A + + + L+ + + Sbjct: 118 GQADLQARVFRHVSDA---FAEDPVRILRVARFAARFTDFTVAPQTLALMRQMVEAGEVD 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L ER+W E+ + L P + G + + +V + + Q + + Sbjct: 175 ALVPERVWQELARGLMEPEPSRMFEVLRQCGALERVLPEVARLFGVPQRAD-------YH 227 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++D+ + +++I + + A+ ++LP Sbjct: 228 PEVDTGVHVMMVIDY-------AAARHYALP 251 >gi|289522442|ref|ZP_06439296.1| polyA polymerase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504278|gb|EFD25442.1| polyA polymerase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 876 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 27/227 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRV----------MRIFSKTRYKVIPTSISY 77 K+ +VGG VRD L+ QD+DI I D + R+ RY+ Sbjct: 477 KAYVVGGFVRDLLLGKENQDLDI--VIEGDALSFIKSWEADGCRVAVHERYRT------- 527 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQG 133 GTI +K D+ T R + V K D RRDFT+N++ G Sbjct: 528 GTIVFPGGRK-IDVATARREFYEYPVALPKVVGDSLKHDLYRRDFTVNSMAISINGTSWG 586 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +IDY GG DL+ R ++ + + +ED R+LR R G + D+ + Sbjct: 587 TLIDYFGGRRDLQKRQLRVLHNLS--FVEDPTRVLRGLRLKHRLGFEFEDNTVRLIKSAI 644 Query: 194 KKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 K G L +LS R+ +E+ + + ++ M + GIF+ +F ++ Sbjct: 645 KGGLLALLSGTRVKNELKLIFLEERAYPIVLEMVHLGIFEALFPGIK 691 >gi|157415060|ref|YP_001482316.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 81116] gi|157386024|gb|ABV52339.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Campylobacter jejuni subsp. jejuni 81116] gi|307747701|gb|ADN90971.1| PolyA polymerase family protein [Campylobacter jejuni subsp. jejuni M1] Length = 372 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 128/264 (48%), Gaps = 39/264 (14%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 ++SDL I L ++ +VGG+VRD + L + D DI L D ++ F K K+ Sbjct: 10 NNSDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIE---LYDIKLKDFEKIMQKL 66 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA-- 126 + +G + + K +D+ R++ I+ G +V D K + RRDFTIN+ Sbjct: 67 --GAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMM 124 Query: 127 --LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 L+ D+ +D+ GGL DL ++ I + ED LR+LR F + + K I S Sbjct: 125 INLFNDE---FLDFYGGLKDLGAGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-ITS 178 Query: 185 DGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + S+K + + I LS +RI +E+ K K+P + + Y +QE+ Sbjct: 179 E----SLKLMQSMDITDLSKDRINAELYKFF--KSPRLDVGYRY-----------LQELG 221 Query: 243 LDQLSQVIEAEQVFE-WKIDSLLR 265 L++ QV E VF+ + +LLR Sbjct: 222 LEK--QVFGFESVFKSLEFQNLLR 243 >gi|219126569|ref|XP_002183527.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405283|gb|EEC45227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 631 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 76/337 (22%), Positives = 146/337 (43%), Gaps = 36/337 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC----RK 86 + GG VRD L+ L D+D+A L + + T S G I +I + Sbjct: 90 VAGGWVRDKLLGLETHDVDVAVDSLTGVQFAKLVQGYLQQNSTEQSAGRIGVIAANPSQS 149 Query: 87 KYFDITTLR-------------SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 K+ + T++ +L D +V D+ RRDFT+NAL+ + Sbjct: 150 KHLETATMKIGRIEVDFCNLRAEELYEDHSRIPIVRFGSPLEDAKRRDFTVNALFFNLHT 209 Query: 134 KVID--YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLV 188 ++++ G+ DL +R I + L+D LR++R RF Y + +++ + Sbjct: 210 RLVEDWTKSGIPDLISRRIVTPLEPVRTFLDDPLRVIRAIRFAVRYDFELDPALEAACMC 269 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAK--NPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 I +K+ S ER+ E+ +L + NP+ A+ + + +F + ++ D + Sbjct: 270 TEIHQALHVKV-SRERVGKELEGMLSGRGANPIMAMDLIARLKLAGSVFC-LPKVGEDNV 327 Query: 247 SQVIEAE---QVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 S I+ + + DS +R + + W++ +++L +A F + IR Sbjct: 328 S-FIKGHILGNAYTGQHDSNDIRKLRELGWEESRALLQLA-PFVVASHIRTASKQAAKSG 385 Query: 303 FNQKTLSIPEIKKLF--YLYGDKVMIAKLKIFLALHY 337 ++++ L + F LYG++ + K LA+HY Sbjct: 386 YDKRLLPLGVFMLPFRTLLYGERQKLDKE--LLAIHY 420 >gi|255956289|ref|XP_002568897.1| Pc21g19060 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590608|emb|CAP96803.1| Pc21g19060 [Penicillium chrysogenum Wisconsin 54-1255] Length = 561 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 37/241 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATT--------------------------ILPDRVMRIFSK 65 GG VRD L+ + DID+ + LP+ M Sbjct: 82 TGGWVRDKLLGVDSHDIDVGISNMTGYQFGMALKDYLDVPEHLENYKKGLPNGEMHDAIV 141 Query: 66 TRYKVIPTSISYGTIKIICRKKY---FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRD 121 + +K+ ++ + K + D+ LR + TD R ++ F + D+LRRD Sbjct: 142 SLHKIEANPEKSKHLETVTTKIFGLDIDLVNLRKETYTDDSRNPQMEFGTAVE-DALRRD 200 Query: 122 FTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 TINAL+ + + ++ D GL+D++ I+ + + +D LR+LR RF + G Sbjct: 201 ATINALFYNLNESRLEDLTERGLDDMKKNIIRCPMEPYQTFKDDPLRVLRLIRFASRLGY 260 Query: 179 --EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 E ++ + I+ LKI S ER+ +E+ K+L +P A+ + +F IF Sbjct: 261 QIEAETEAAMQIEDIREALKLKI-SKERVGTEVEKMLRGPDPRGALQFIDRLQLFPTIFA 319 Query: 237 D 237 + Sbjct: 320 N 320 >gi|217967879|ref|YP_002353385.1| hypothetical protein [Dictyoglomus turgidum DSM 6724] gi|217336978|gb|ACK42771.1| CBS domain containing protein [Dictyoglomus turgidum DSM 6724] Length = 845 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 11/154 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTRYKVIPTSISYGTIKIICR-KKYF 89 +GG VRD L+ S D+DI V+ +I K + KVI T +GT +I+ +K Sbjct: 475 IGGFVRDLLLGQSNYDLDIVVEGDIQLVISKIIDKWQSKVI-THPQFGTSEILLNDRKRI 533 Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 DI T R + + G KV + W D RRDFTINAL + G++ID GGL D Sbjct: 534 DIATARIEYYEEPGSLPKVERSSLW-LDLKRRDFTINALAMSLNEENFGEIIDLYGGLED 592 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 L + ++ + + +ED RILR R G Sbjct: 593 LTRKELRVLHNLS--FIEDPTRILRGVRLEVRLG 624 >gi|124268482|ref|YP_001022486.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1] gi|124261257|gb|ABM96251.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1] Length = 434 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 35/275 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ ++ +D D + P +++ +P + + + + Sbjct: 25 VVGGAVRDELLGIAGRDRDWVVVGSTPQQMLDA------GFLPVGRDFPVF--LHPQTHE 76 Query: 90 DITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + RS+ T Y F + D RRD TINA+ G +ID GG DL Sbjct: 77 EYALARSERKTGPGYHGFSFHAAPDVTLEQDLARRDLTINAIARAADGTLIDPYGGQRDL 136 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSE 203 R ++ + A ED +RILR RF A + ++ + L G ++ L E Sbjct: 137 AARVLRHVSPA---FAEDPVRILRVARFAARFDGFSVAPETLALMRDMVDGGEVDHLVPE 193 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWKIDS 262 R+W E+ + L P + G + + +V + + Q ++ ++D+ Sbjct: 194 RVWQELARGLMEPRPSRMFELLRECGALQRLLPEVARLWGVPQRAE-------HHPEVDT 246 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 + ++ +L M+ + P +RY + Sbjct: 247 GVHLMM---------VLDMSARLDAPLTVRYACLG 272 >gi|33860701|ref|NP_892262.1| poly A polymerase family protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633643|emb|CAE18600.1| Poly A polymerase family [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 415 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 39/246 (15%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVM----RIFSKTRYKVI 71 ILS L G S +VGG +RD ++ SV D+DI ++P + +I K K I Sbjct: 38 ILSSLPSG---SFLVGGYIRDLILGRLNSVIDVDI---LVPKNAINVGKKIADKFEGKFI 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YAD 130 + ++II + DI + S I D L RDF+INA+ ++ Sbjct: 92 ILDEARDVVRIIFKHISIDIASQISPSID--------------IDLLSRDFSINAIAFSF 137 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ +ID G+ DL+ ++ ++ +L+D LRILR FRF + + N+D L+ Sbjct: 138 EEKLLIDPSNGIKDLQLAFLR--TNSKQNLLDDPLRILRCFRFISEL-DFNVDV-TLIDF 193 Query: 191 IKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-------IFLDVQEIS 242 IK K L+++++ERI EI +++ AI+ + IF IFLD+++I+ Sbjct: 194 IKTYKNQLRLVANERINYEIQRIIRGGKASQAIILINKFKIFDYIQSEKNLIFLDLEKIN 253 Query: 243 LDQLSQ 248 ++ ++ Sbjct: 254 FEEFNK 259 >gi|295134943|ref|YP_003585619.1| tRNA nucleotidyltransferase [Zunongwangia profunda SM-A87] gi|294982958|gb|ADF53423.1| tRNA nucleotidyltransferase [Zunongwangia profunda SM-A87] Length = 483 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 8/217 (3%) Query: 29 SCIVGGAVRDSLMNL-SVQDIDI-ATTILPDRVMRIFSKTRYKV-IPTSISYGTIKIICR 85 S ++GG VRD ++ + +DIDI A D +++ +K + +YGT + Sbjct: 34 SYVIGGFVRDFILQRGNAKDIDIVAVGSGIDLALKVSQLLPHKPKVQVFKNYGTAMLRAF 93 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + R + + VV + D RRDFTINAL G ++D GG Sbjct: 94 DMDIEFVGARKESYAEDSRNPVVENGTLEDDQNRRDFTINALALSLNTSNYGDLLDPFGG 153 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL+++ I+ + +D LR+LR RF + I+ L A + K +KI+S Sbjct: 154 LADLKSQLIRTPLEPGVTYSDDPLRMLRAIRFASQLNFV-IEKKSLDAIKEHHKRIKIIS 212 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ERI E++K+L + P ++ + K I ++ Sbjct: 213 KERITEELHKILLSNRPSKGFALLHKTKLLKIILPEL 249 >gi|134297207|ref|YP_001120942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia vietnamiensis G4] gi|166233850|sp|A4JIK4|CCA_BURVG RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|134140364|gb|ABO56107.1| metal dependent phosphohydrolase [Burkholderia vietnamiensis G4] Length = 413 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 24/200 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD+L+ + VQD D + P+++ + K P + T +++Y Sbjct: 6 VGGAIRDALLGVPVQDRDYVVVGATPEQMAAQGFRPVGKDFPVFLHPDT-----QEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVF--TRDWKADS--LRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D D RRD TINA+ + G VID Sbjct: 59 -ALARTERKTAAGYHGFQFYYAPDVTLDEDLARRDLTINAMAREVSPDGTLIGPVIDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DLR R + + DA +ED +RILR RF A + + + + L+ + Sbjct: 118 GQADLRARVFRHVSDA---FVEDPVRILRIARFAARFADFTVADETLALMRRMVDAGEAD 174 Query: 199 ILSSERIWSEINKLLEAKNP 218 L ER+W EI + L P Sbjct: 175 ALVPERVWQEIARGLMEATP 194 >gi|213859840|ref|ZP_03385544.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 176 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 96 SDLITDGRYAKVVFTRD-----WKADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRN 147 SD T R + RD + D+ RRDFTIN+LY AD V DYVGG+ DL+ Sbjct: 41 SDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVAD--FTVRDYVGGMQDLQE 98 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 I+ IG+ R ED +R+LR RF A + I + + L + R++ Sbjct: 99 GVIRLIGNPETRYREDPVRMLRAVRFAAKLNMR-ISPETAEPIPRLATLLNDIPPARLFE 157 Query: 208 EINKLLEAKN 217 E KLL+A N Sbjct: 158 ESLKLLQAGN 167 >gi|255561389|ref|XP_002521705.1| poly(A) polymerase, putative [Ricinus communis] gi|223539096|gb|EEF40692.1| poly(A) polymerase, putative [Ricinus communis] Length = 675 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 12/205 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIP 72 +L +L+ ++ +VGG VRD L+N +D D+ TT +V + F + R+ + Sbjct: 78 VLKILHNKGFEAYLVGGCVRDLLLNRIPKDFDVITTAKLKQVKKQFHRCEIVGRRFPICR 137 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVV---FTRDWKADSLRRDFTINALYA 129 + +++ + + +++ + + F R W+ +S+ RDFTIN+L+ Sbjct: 138 VHVKGSVVEVSSFETVAQHNEGKEEVLISQKPSGCNGRDFIR-WR-NSMHRDFTINSLFF 195 Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D ++ DY G+ DL ++ + A ED RILR R G +I D Sbjct: 196 DPFMNQIFDYANGMADLSFLKLRTVIPARLSFQEDCARILRGLRIAGRLG-LSISKDTES 254 Query: 189 ASIKAKKGLKILSSERIWSEINKLL 213 A K +K L RI E+N +L Sbjct: 255 AIRKLSSSVKSLDKARIMMELNYML 279 >gi|313681139|ref|YP_004058877.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sulfuricurvum kujiense DSM 16994] gi|313153999|gb|ADR32677.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sulfuricurvum kujiense DSM 16994] Length = 462 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 23/217 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDI---ATTILP--DRVMRIFSKTRYK 69 L+ ++ L+ K VGG VRD + D+DI T L + ++R F K Sbjct: 8 LVRLVEHLSHHGIKPIFVGGFVRDFFTGHTTSDLDIELYGVTSLETLEALLRPFGKLGL- 66 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD------SLRRDFT 123 S+G +K+ D + R++ + + F +W +D + RRDFT Sbjct: 67 ---YGKSFGVLKLNYEGYSIDFSPPRTE--SKSGFGHKGFELEWFSDLDFSAAARRRDFT 121 Query: 124 INAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INA+ Y ++D GG+ DL+ + ++ + ++D LR+LR +F A + E Sbjct: 122 INAIGYDPLTQTLLDPFGGVEDLKAKRLRCVDP--ETFIDDPLRVLRAVQFTARF-ELTC 178 Query: 183 DSD--GLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 D + L + A L L ERI+ E KLL N Sbjct: 179 DKNLLALCRQMIANGALNELPKERIFEEFKKLLLQSN 215 >gi|158520990|ref|YP_001528860.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfococcus oleovorans Hxd3] gi|158509816|gb|ABW66783.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfococcus oleovorans Hxd3] Length = 474 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 41/229 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI--------PTSISYGTIKI 82 +VGGA+RD L +D+DI P+ V R +K R P + + Sbjct: 26 VVGGALRDHLAGRLPRDVDIICDEAPN-VARCIAKARLSGAVVVKLEKKPHPPCFRVVDK 84 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA-----DQQGKVID 137 + D+ TL D I +AD RDFT+NA+ A + G++ID Sbjct: 85 NNPAESIDVVTLHPDGI--------------RADLEARDFTVNAMAAALLPGGRIGEIID 130 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKA 193 +GG+ D++NR ++ D +RILR RF A + +D + A Sbjct: 131 PLGGMADMQNRLLRACSGTA--FAADPVRILRAARFAATLDFTIFPETLD------RMAA 182 Query: 194 KKGLKILSS-ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 GL S+ ERI +E+ +LL + L I + + G +F ++ + Sbjct: 183 AVGLLTRSAFERITAELFELLACPDALPHIQMLDDIGALDVLFPEIAAM 231 >gi|323697882|ref|ZP_08109794.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp. ND132] gi|323457814|gb|EGB13679.1| Polynucleotide adenylyltransferase region [Desulfovibrio desulfuricans ND132] Length = 895 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 22/216 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM---RIFSKTRYKVIPTSISYGTIKIICRKKY 88 VGG VRD L+ D+D+ + D + R +K +V S + I+ + Sbjct: 492 VGGFVRDILLGRPNLDLDL--VVEGDGIAFARRFAAKLGGRVKAHSKFKTAVVILDDGQR 549 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 D+ T R + V K D RRDFT+NAL + G+++D+ G D Sbjct: 550 VDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNALALRINPGRYGQLVDFFGAERD 609 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKAKKGLKI-- 199 +RN+TI+ + +ED RILR RF E+ D + IK LK+ Sbjct: 610 IRNKTIRVLHSLS--FVEDPTRILRAIRF-----ERRFDFQIGGQTMRLIKNALSLKLFS 662 Query: 200 -LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 LS R+ E+ ++ ++PL ++ M GI + I Sbjct: 663 KLSGTRVMHELQLIMNEEDPLACLLRMQELGIMEAI 698 >gi|307265132|ref|ZP_07546691.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter wiegelii Rt8.B1] gi|306919754|gb|EFN49969.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter wiegelii Rt8.B1] Length = 388 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 103/415 (24%), Positives = 177/415 (42%), Gaps = 67/415 (16%) Query: 11 HDSDLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF------ 63 ++ DLI +L ++ K + KS IVGG VRD L L V+++DI + D + + Sbjct: 6 NEIDLIKLLKEISLKTKIKSYIVGGVVRDFL--LGVKNLDIDVVVEGDGIEFAYILLSYL 63 Query: 64 --SKTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 Y+ T ++SY I I DI + R + + + D RR Sbjct: 64 KGDIVVYEAFRTATLSYDGISI-------DIISARKEYYERPAALPTIEFSNIYDDMARR 116 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHR-ILEDYLRILRFFRFFAHYG 178 DFTIN L D + K++DY GL DL+ I+ + H + ++D RI R R+ Y Sbjct: 117 DFTINTLAYDVIEEKILDYFNGLEDLKKGLIRVL---HPKSFIDDPTRIFRAIRYATRYS 173 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-- 235 E + L+ ++ + +++LS++RI +EI +L+ I + GI K IF Sbjct: 174 FEIEEKTHNLMK--ESIENIRLLSADRIRNEIFLILKESKAQEMIDKLIYYGIDKVIFDG 231 Query: 236 --LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293 L+ Q LD + +E E L RF+VL + +K I + K+ + + Sbjct: 232 ITLNTQ--HLDTVYVNLEIE---------LYRFLVLFYYLKEKDINEIEKRLRINKIYLK 280 Query: 294 FL--ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351 L + F N + +I +I++ ++V+ A ++V Sbjct: 281 ALKDLVFLREQLNCQNKNIRKIRETIEETKEEVLKA---------------------IEV 319 Query: 352 LSDIIHWK--KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + K K + G D+ G+PPG G ++ + + IN E++ Sbjct: 320 MEGEKAEKIIKGKLTVKGKDIENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374 >gi|86132790|ref|ZP_01051382.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Dokdonia donghaensis MED134] gi|85816744|gb|EAQ37930.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Dokdonia donghaensis MED134] Length = 471 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 14/221 (6%) Query: 28 KSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFS-----KTRYKVIPTSISYGTIK 81 ++ ++GG VRD ++ V+DID+ ++ R S K + +V T YGT Sbjct: 25 ETYVIGGFVRDYILKRGEVKDIDVVAVGSGIKLARKVSELLPNKPKVQVFKT---YGTAM 81 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVID 137 + + + R + + VV D RRDFTINAL + G +ID Sbjct: 82 LRSNQIDVEFVGARKESYSKDSRNPVVEDGTLADDQNRRDFTINALAIRLNDEGYGDLID 141 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GG++DL + I+ D +D LR++R RF + I+ + + + + + Sbjct: 142 PFGGISDLDRKIIRTPLDPDITYSDDPLRMMRAIRFATQL-DFMIERKSVESITRNAERI 200 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 KI+++ERI E+NK++ + P + + G+ I ++ Sbjct: 201 KIITNERIVDELNKIMLSPVPSKGFLLLEKTGLLPYILPEL 241 >gi|114566944|ref|YP_754098.1| polyA polymerase family protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337879|gb|ABI68727.1| polyA polymerase family protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 880 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 40/286 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK---------TRYKVIPTSISYG 78 ++ VGG VRD + + D+D+ + + R ++ R++ + G Sbjct: 477 RAYCVGGFVRDFFLRVPNFDVDLVVEGDGEELARKMAQHLGGKARIHQRFRTAALMLPDG 536 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGK 134 T DI T R++ V + D RRDFTIN AL D G Sbjct: 537 T--------KIDIATARTEYYEFPAALPKVEKASIREDMYRRDFTINTLAIALNPDSFGD 588 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA- 193 +IDY GG DL I+ + + +ED RI+R RF Y + I+ D L + A Sbjct: 589 LIDYFGGRKDLEKGLIRILYNLS--FVEDPTRIIRAIRFEQRY-KFTIEDDTLRFAKDAI 645 Query: 194 -KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI-- 250 ++ L LS +RI E+ LL +PL A+ + G+++ + + EI L+++S+ + Sbjct: 646 ERRLLGKLSYKRIIQELMLLLSEIDPLPALDRIMEIGVWEYM---IPEIDLNKVSRTMIK 702 Query: 251 EAEQVFEWKIDS---------LLRFIVLISWQDKKSILSMAKKFSL 287 + W + L+ F++L++ D++ ++ + K++ L Sbjct: 703 RTPIIITWWEERYYGKNIKGWLVYFMLLLAGLDEELVIQIIKRYHL 748 >gi|256752052|ref|ZP_05492920.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter ethanolicus CCSD1] gi|256749062|gb|EEU62098.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter ethanolicus CCSD1] Length = 388 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 105/420 (25%), Positives = 176/420 (41%), Gaps = 83/420 (19%) Query: 14 DLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF--------S 64 DLI +L + +K + KS IVGG VRD L L V+++DI + D + + Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFL--LGVKNLDIDVVVEGDGIEFAYILLSYLKGD 66 Query: 65 KTRYKVIPT-SISYGTIK---IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 Y+ T ++SY I I RK+Y++ + F+ + D RR Sbjct: 67 IVVYEAFRTATLSYDGISIDVISARKEYYE---------RPAALPTIEFSNIYD-DMARR 116 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHR-ILEDYLRILRFFRFFAHYG 178 DFTIN L D + K++DY GL DL+ I+ + H + ++D RI R R+ Y Sbjct: 117 DFTINTLAYDVIEEKILDYFNGLEDLKKGLIRVL---HPKSFIDDPTRIFRAIRYATRYS 173 Query: 179 ----EK--NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 EK N+ D + + +++LS++RI +EI +L+ I + GI K Sbjct: 174 FEIEEKTHNLMKDSI-------ENIRLLSADRIRNEIFLILKESKAKEMIDKLIYYGIDK 226 Query: 233 EIF----LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 IF L+ Q LD + +E E L RF+VL + +K I + K+ + Sbjct: 227 VIFDGITLNTQ--HLDTVYVNLEIE---------LYRFLVLFYYLKEKDINEIEKRLRIN 275 Query: 289 REIRYFL--ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346 + L + F N + +I +I++ T ++ Sbjct: 276 KIYLKALKDLVFLREQLNCQNKNIRKIRETI---------------------EETKEEVL 314 Query: 347 FILQVLSDIIHWK--KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++V+ K K + G D+ G+PPG G ++ + + IN E++ Sbjct: 315 RAIEVMEGEKAEKIIKGKLTVKGKDIENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374 >gi|255720689|ref|XP_002545279.1| hypothetical protein CTRG_00060 [Candida tropicalis MYA-3404] gi|240135768|gb|EER35321.1| hypothetical protein CTRG_00060 [Candida tropicalis MYA-3404] Length = 551 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 24/219 (10%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIP--TSISYG 78 LNK + I GG VRD L+ DIDIA L ++ + + K P ++ Sbjct: 51 LNKDPLELRITGGWVRDKLLGNDSHDIDIAVNHLTGEQFVNGLHEYLKKYEPELSTNHVH 110 Query: 79 TIKI---------ICRKKYF----DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTI 124 TIK+ C K F D LRS+ T + R + F + D++RRD T+ Sbjct: 111 TIKMNPEKSKHLETCTTKLFGIDIDFVNLRSEEYTLESRVPTIEFGTP-EEDAVRRDATL 169 Query: 125 NALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 NAL+ + VI D+ GL+DL + ++ L+D LRI+R RF + + I Sbjct: 170 NALFYNLNKSVIEDFTKRGLDDLEHGILRTPLPPIQTFLDDPLRIIRLIRFASRFNFV-I 228 Query: 183 DSDGLVASIKAKKGLKI---LSSERIWSEINKLLEAKNP 218 + + L A + + + +S ER+ E+ K+L +KNP Sbjct: 229 EPETLKAMKDDRNKVALQNKISKERVEIELRKILTSKNP 267 >gi|282896159|ref|ZP_06304184.1| PolyA polymerase [Raphidiopsis brookii D9] gi|281198959|gb|EFA73835.1| PolyA polymerase [Raphidiopsis brookii D9] Length = 914 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 59/244 (24%) Query: 31 IVGGAVRDSLM------NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIP 72 +VGGAVRD L+ L + DID+ A L + +I+ +R ++ Sbjct: 490 LVGGAVRDLLLVNDASNQLMLHDIDLVVDGFHQSADVGAGVELARELQQIYQNSRLEI-- 547 Query: 73 TSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ T ++ K + DI T R++ V + D RRDFTINA Sbjct: 548 -HGAFQTAALLWHKDPELDCLWVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINA 606 Query: 127 ----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---- 178 L + G+++D+ GGL DLR+R I+ + + +ED RI R RF +G Sbjct: 607 MALRLTSPHSGELLDFFGGLIDLRSRKIRVLHP--NSFIEDPTRIYRGVRFAIRFGFAIE 664 Query: 179 --------------------EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 ++NI + L +KA+ LK++ W KLL+ Sbjct: 665 QRTAEYINYAINSGVYDRTVQENIKTPALHTRLKAE--LKLILQASYWQSALKLLDQLGA 722 Query: 219 LNAI 222 L I Sbjct: 723 LQCI 726 >gi|182412522|ref|YP_001817588.1| polynucleotide adenylyltransferase region [Opitutus terrae PB90-1] gi|177839736|gb|ACB73988.1| Polynucleotide adenylyltransferase region [Opitutus terrae PB90-1] Length = 463 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 85/193 (44%), Gaps = 21/193 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP----DRVMRIFSKTRYKVIPTSISYGTIKI--IC 84 +VGG VRD L+ L +D D+ R + F T S+G IK+ Sbjct: 13 LVGGGVRDWLLGLEAKDFDVEVAGADFETLQRALAPFGATDV----VGRSFGVIKVRSAA 68 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWK---AD-SLRRDFTINALYADQ-QGKVIDYV 139 +D + R + T + D + AD + RRDFTINA+ D G++ID Sbjct: 69 SGAEYDFSLPRRESKTGAGHRGFAVAPDPQLSDADAAARRDFTINAIACDPFTGELIDPH 128 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLK 198 G DL R ++ A +ED LR+LR F+ A + + ++ L +I G Sbjct: 129 HGQRDLGARVLRHTSAA---FVEDPLRVLRAFQLAARFDLQLAPETAALCRTIADTYGE- 184 Query: 199 ILSSERIWSEINK 211 L ER+W+E K Sbjct: 185 -LPVERVWAEWEK 196 >gi|158338560|ref|YP_001519737.1| polyA polymerase [Acaryochloris marina MBIC11017] gi|158308801|gb|ABW30418.1| polyA polymerase [Acaryochloris marina MBIC11017] Length = 442 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 106/446 (23%), Positives = 179/446 (40%), Gaps = 90/446 (20%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +C+VGG VRD+L+N +D+ D V+ + + + S + G + + + Sbjct: 22 SACLVGGCVRDALLNRHTAYLDL------DFVLPKAAVETARRVSESCNAGFVLLDAER- 74 Query: 88 YFDITTLRSDLITDGRYAKVVF---TRDWK---ADSL-----RRDFTINAL-YADQQGKV 135 DI A+VVF T D+ DSL RRD+TINA+ Y V Sbjct: 75 --DI-------------ARVVFPDATADFALQVGDSLEEDLQRRDYTINAIAYHPFSDTV 119 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D + G DL ++ I A + ED LR+LR +R A G I+ + Sbjct: 120 VDPLMGQQDLDAGVLRMI--AAKNLEEDPLRLLRAYRQAAQLG-FTIEPQTQANIRQLTP 176 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LK +++ERI E++ LL + ++ G+ F SL L + +A + Sbjct: 177 QLKGIAAERIKVELSYLLSDSKATPWVHQLWQDGLLSTSFPHASSTSLAFLPAIDQAASL 236 Query: 256 FEWKIDSL-------LRFIVLISWQDKKSILSMAKKFSL----PREIRYFLISFFNCNFN 304 + ++ L L ++++LS K SL P + I+ F+ Sbjct: 237 LQKEVPDLATAFHQELNERAQGKEAAQRTLLSTTKWVSLLSDNPTQAE---ITLKQMKFS 293 Query: 305 QKTLSI--------PEIKKL-----------FYLYGD------KVMIAKLKIFLALHYNN 339 + + + P +K+L FYL+ D V++ L + L Sbjct: 294 RGEIHVITRVLNGWPRLKQLLQQEHCRRVDQFYLFQDADTTFPAVVMVTLAVELMQQSLR 353 Query: 340 LTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK 389 +C L LS + H +PL L+G ++K + PG +VG++L Sbjct: 354 GAETPSCLPALKPWIAEYLNPLSALAH-PQPL--LSGSALMKSLHLSPGPEVGHLLSQLT 410 Query: 390 QEWINSSFQLSQEDLHHLLRKLIASS 415 S S+E L L + L++S+ Sbjct: 411 LAQAEGSITTSEEAL-ALAQTLVSST 435 >gi|218248479|ref|YP_002373850.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8801] gi|218168957|gb|ACK67694.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 8801] Length = 903 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 95/404 (23%), Positives = 162/404 (40%), Gaps = 67/404 (16%) Query: 31 IVGGAVRDSLMN-----LSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 IVGGAVRD L++ L +QDID+ A L + F R + Sbjct: 490 IVGGAVRDLLLSEEQEFLLLQDIDLVVDGFHRSADVGAGVELASTLQENFPNARLSI--- 546 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T ++ K + DI T R++ V + D RRDFTINAL Sbjct: 547 HGEFQTAALLWHKDPQLGSLWVDIATSRTEFYPYPAANPEVEASSIRQDLYRRDFTINAL 606 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----- 178 ++G+++D+ GG+ DLR+R I+ + + +ED RI R RF G Sbjct: 607 AVRLTPPRKGELLDFFGGMLDLRSRQIRVL--HANSFIEDPTRIYRAVRFAVRLGFEIDP 664 Query: 179 --EKNID---SDGLVASIKAKKGLKILSSERIWSEINKLLEA----KNPLNAIVHMYNGG 229 E I+ G+ ++ + + R+ +E+ +LE+ Sbjct: 665 QTETYINYAIESGIYERLRIENHPAPALTTRLKAELKYILESYYWKPALKLLADLDALKC 724 Query: 230 IFKEIFLDV----QEISLDQLSQVIEAEQVFE-WKIDSLLRFIVLISWQDKKSILSMAKK 284 + ++ LD Q + + + ++ E E W LLR VLI+ D +A Sbjct: 725 LHSQLILDDILWWQIRYVSRCLRYLDPENQLEHW----LLRLEVLITQLDPTERSKIAVN 780 Query: 285 FSLPREI--RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 LP+E R +S Q L ++ ++ + L+ + + ++ Sbjct: 781 LQLPKESLERLKKLSQIELEIKQNLLKCTQLSEI---------VNVLRPYRLPNLILVSV 831 Query: 343 QDTCFILQVLSD-IIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 + +C I + + + + W K PLTG+D+ G PG + IL Sbjct: 832 RSSCEIRRTIWEYLTKWSKIQAPLTGNDLKVMGYKPGPQYKTIL 875 >gi|150390292|ref|YP_001320341.1| polynucleotide adenylyltransferase region [Alkaliphilus metalliredigens QYMF] gi|149950154|gb|ABR48682.1| Polynucleotide adenylyltransferase region [Alkaliphilus metalliredigens QYMF] Length = 875 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 19/196 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS----YGTIKI-ICR 85 IVGG VRD L+ QD+D + D + F++ ++I ++ +GT I + Sbjct: 477 IVGGFVRDFLLGEENQDLDFV--VEGDGIA--FAQALNEIIQGRLTIHEKFGTATIQLPD 532 Query: 86 KKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVG 140 K+ D+ T R + +V + W +D RRDFTINA L + G++IDY G Sbjct: 533 KRTLDVVTARREYYEYPAAMPQVEKSSIW-SDLFRRDFTINAMAIQLNKSKFGQLIDYFG 591 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKI 199 G+ DL ++ I+ + + +ED RI R RF D K G L Sbjct: 592 GIQDLEDKNIRVLYNL--SFVEDPTRIFRAIRFSTRLNFNIEDETKTFIHEAIKDGMLDR 649 Query: 200 LSSERIWSEI-NKLLE 214 LS+ER+ EI N +LE Sbjct: 650 LSAERLREEILNTILE 665 >gi|332706570|ref|ZP_08426631.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lyngbya majuscula 3L] gi|332354454|gb|EGJ33933.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lyngbya majuscula 3L] Length = 425 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 19/231 (8%) Query: 29 SCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +C+VGGAVRD+++N QD+D +LP + +R SK + + + I R Sbjct: 24 ACLVGGAVRDAVINRQSVTQDLDF---VLPTKAVRSASKLARRYKAGFVVLDAQRQIARV 80 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDL 145 + + T + D +AD RRD+TINA+ + K ID + G+ D Sbjct: 81 VFGNATVDFAQQDGDS----------LEADLHRRDYTINAIAFNPHTKEFIDPLQGILDC 130 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 R I+ + + + +D LR+LR +R A G + ID K L +++ER+ Sbjct: 131 RKGIIRMV--SPENLQKDPLRLLRGYRQAAQLGFQ-IDPATQSVIRKLAPLLSKIAAERV 187 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 +E+ LL++ + + + + + D L+ ++ V ++ V Sbjct: 188 RTELGYLLKSPQGVPWLKAAWEDNVLRPWLPDATAEGLEHMAAVDQSAVVL 238 >gi|226355482|ref|YP_002785222.1| nucleotidyltransferase [Deinococcus deserti VCD115] gi|226317472|gb|ACO45468.1| putative nucleotidyltransferase [Deinococcus deserti VCD115] Length = 366 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 88/399 (22%), Positives = 146/399 (36%), Gaps = 68/399 (17%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 + G + +VGGAVRD+L+ + D+D+ P V+ + T Sbjct: 27 HAGGGRVALVGGAVRDALLGHTPLDLDVVVEGAP--VLAVAENTGLPFTFHPAFQNATLS 84 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDY 138 + + D+ R + V D RRDF +NAL + + +D Sbjct: 85 LPDGRSADLVQARRETYPQPGANPVPHPGTLTDDLRRRDFGLNALALLVRPNGEPVFLDE 144 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 VGGL+DL R ++ + + R +D R++R R A E + + L+ I + Sbjct: 145 VGGLDDLEARQLRPLHASSLR--DDASRLVRGARLAARL-ELHASPE-LLEQIPDALHMA 200 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYN---GGIFKEIFLDVQEISLDQLSQVIEAEQV 255 ++ R+W+E+ LL+ P A + G + + L L+ L V + Sbjct: 201 AITP-RLWAELKLLLQEPRPGQAARRLQEWGAGALLPGLKL------LEALDDVQASGTA 253 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI-SFFNCNFNQKTLSIPEIK 314 W L+ ++S D+ + ++A + L L + + F T PE+ Sbjct: 254 LPW----LVYAAAMLSASDQPA--ALAARMGLGERPGALLARALSDTYFPDGT---PELL 304 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 L D Y+ PLTG DVV G Sbjct: 305 LRRLLRPDS-------------YS-------------------------PLTGRDVVALG 326 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + PGK VG L H ++E+ L R L+A Sbjct: 327 VTPGKAVGQALAHLASLRRTGQVHSAEEERAALQRYLLA 365 >gi|206901222|ref|YP_002251230.1| poly A polymerase, putative [Dictyoglomus thermophilum H-6-12] gi|206740325|gb|ACI19383.1| poly A polymerase, putative [Dictyoglomus thermophilum H-6-12] Length = 469 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 30/220 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP----DRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 IVGG +RD L+ QDID D + +I K R ++ Y I + ++ Sbjct: 25 IVGGFIRDYLLGKKPQDIDFLIDPFNIDFIDNLSKIL-KGRLVILDEERKYFRIVVKNKE 83 Query: 87 KYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLN 143 F D T ++ ++ + +RRDFTIN++ + + ++ D + GL Sbjct: 84 NTFVLDFTP--------------IYQQNLLLEIVRRDFTINSIVLNLRNFEIYDPLKGLK 129 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL +K + + ED LRILR FRF A G K ID + K + L + E Sbjct: 130 DLERNVLKL--SSPDSLKEDPLRILRVFRFGAS-GFK-IDKSVFESIRKNSQRLSKIKPE 185 Query: 204 RIWSEINKLLEAKNPLNAIV--HMYNGGIFKEIFLDVQEI 241 RI E+ K+L KNP + + M + +EIF ++ E+ Sbjct: 186 RIHEELYKIL--KNPFTSYIWKEMEEYNVLREIFPELSEM 223 >gi|309789886|ref|ZP_07684464.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Oscillochloris trichoides DG6] gi|308228093|gb|EFO81743.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Oscillochloris trichoides DG6] Length = 519 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 122/302 (40%), Gaps = 31/302 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYGTIKIICRKK-- 87 ++GG RD L + D+D+A + R + + +P + T + + + Sbjct: 26 LIGGTSRDLLRGVEPTDLDLAVDGDGLELARTLADQLDGSFVPLDGEHCTGRTVLPARAN 85 Query: 88 ----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV----IDYV 139 Y DI LR+ I DG FT + A L R A D + +V +D Sbjct: 86 RPALYLDIARLRAPSI-DGDLRLRDFTINALALPLTRQLLAAASEPDGETQVRTMLLDPT 144 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK-KGLK 198 GGL DL+ ++ G A + +D LRILR RF A + L I+A GL Sbjct: 145 GGLADLQAGILRTTGPAS--MADDPLRILRAPRFAATLNLRPAPE--LATQIRAAAPGLS 200 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---------LDQLSQV 249 ++ ER+ E+ KLLE + + ++ G+ +F +++ L L+ + Sbjct: 201 RIAGERLRDELLKLLETPSSATWLDYLDACGVLTILFPELEAARTCNQPRVHFLPVLAHM 260 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY-----FLISFFNCNFN 304 +E EW I L L+ + +++ L R I Y L+S N Sbjct: 261 LETVACLEWIIQGLPLAPNLLPATTPRIPVAVQTHPDLSRAIPYPDAYTHLLSELRSNGR 320 Query: 305 QK 306 ++ Sbjct: 321 RR 322 >gi|120602371|ref|YP_966771.1| polynucleotide adenylyltransferase region [Desulfovibrio vulgaris DP4] gi|120562600|gb|ABM28344.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris DP4] Length = 383 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 26/217 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGGAVRD L+ + ++ DIA F + + + S K+ R Sbjct: 2 KTYLVGGAVRDILIGRTPREHDIA-----------FEASVAHFLQANPS--ARKVGKRID 48 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 + I + + G D +AD L+RDFTINAL + G + + L DLR Sbjct: 49 VYLIGNVEHRPVQGG---------DIRADLLQRDFTINALALEADGTLHAHPDALADLRA 99 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--SIKAKKGLKILSSERI 205 I+ + ++ D +R+LR RF A E ++ + L A ++ A L + E++ Sbjct: 100 SIIRPA--SPEALMTDPVRVLRAARFAAQLPEMSLAQETLEAMRAVAAAGYLADIPCEQV 157 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 E K L + P + GG + F +V +++ Sbjct: 158 CRETLKALGSPAPERFFRSLAKGGCLQPWFAEVADLT 194 >gi|302036512|ref|YP_003796834.1| hypothetical protein NIDE1150 [Candidatus Nitrospira defluvii] gi|300604576|emb|CBK40908.1| conserved protein of unknown function, putative Phosphoesterase and Polynucleotide adenylyltransferase [Candidatus Nitrospira defluvii] Length = 891 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 22/252 (8%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + +VGG VRD L+ + D+D R +K R + +GT ++ + Sbjct: 491 AYVVGGFVRDLLLGIDNLDVDFVVEGDGIAFARALAKERAGRVKVHERFGTAVVLLPDGF 550 Query: 89 -FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLN 143 D+ T R++ V K D RRDFTIN L G++ID+ GG Sbjct: 551 KVDVATARTEYYEYPTALPTVEQSSIKKDLYRRDFTINTLAVRLNPRAFGQLIDFYGGQR 610 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID---SDGLVASIKAKKGLKI- 199 DL+ R I+ + +ED R+ R RF E D S +A IK +++ Sbjct: 611 DLKERLIRVLHSLS--FVEDPTRVFRAIRF-----ELRFDFHLSKETLALIKGAVKMELF 663 Query: 200 --LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQLSQVIEAEQVF 256 LS +R+ E+ L + P +A+ + + + + I + LD+ ++ E E Sbjct: 664 HRLSGQRLLDELRYLFSERTPRHAVRRLADLDLLRFIHPTLTWSNRLDR--RLSEVEAAL 721 Query: 257 EW-KIDSLLRFI 267 EW K+ L R I Sbjct: 722 EWYKLSCLDRHI 733 >gi|153951070|ref|YP_001398289.1| polyA polymerase family protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938516|gb|ABS43257.1| polyA polymerase family protein [Campylobacter jejuni subsp. doylei 269.97] Length = 372 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 34/263 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69 ++ DL I L ++ +VGG+VRD + L + D DI I P +I K Sbjct: 10 NNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKL--- 66 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA- 126 + +G + + K +D+ R++ I+ G +V D K + RRDFTIN+ Sbjct: 67 ---GARGFGKSFFVYKFKNYDLALARTENKISHGHKGFEVQICNDEKLGAKRRDFTINSM 123 Query: 127 ---LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 L+ D+ +D+ GGL DL +++I ED LR+LR F + + K I Sbjct: 124 MINLFNDE---FLDFYGGLKDLGAGFLRYID--QQSFQEDSLRVLRAVVFASRFNLK-IT 177 Query: 184 SDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF------ 235 S+ S+K + + I LS +RI +E+ K ++ ++ G+ K+IF Sbjct: 178 SE----SLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQELGLEKQIFGFENIF 233 Query: 236 --LDVQEISLDQLSQVIEAEQVF 256 L+ Q SL Q + ++++ +F Sbjct: 234 KSLEFQN-SLRQSREFVKSDALF 255 >gi|123965404|ref|YP_001010485.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT 9515] gi|123199770|gb|ABM71378.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9515] Length = 415 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 122/255 (47%), Gaps = 42/255 (16%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKT----RYKVI 71 ILS L G S +VGG +RD ++ S+ D+DI ++P ++I K K I Sbjct: 38 ILSFLPSG---SYLVGGYIRDLILGRLNSLIDVDI---VVPKNAIKIGKKIADKFEGKFI 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YAD 130 + +++I + DI + S I + D RDF+INA+ ++ Sbjct: 92 ILDEARDVVRLIFKHVSVDIASQISPSI--------------EIDLFSRDFSINAIAFSF 137 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVA 189 + +ID G+ DL+ ++ + +LED LRILR FRF + E N + D L+ Sbjct: 138 DKKLLIDPSNGIKDLQLSLLR--THSKQNLLEDPLRILRCFRFVS---ELNFNVDVNLIN 192 Query: 190 SIKA-KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-------IFLDVQEI 241 IK K L +++SERI EI +++ AI + IF IF+D+Q+I Sbjct: 193 VIKTCKNKLSLIASERINYEIQRIIIGSEAAYAIKLINKFKIFDYLQSEKNLIFIDLQKI 252 Query: 242 SLDQLSQVIEAEQVF 256 + + S+ IE ++ F Sbjct: 253 NFEAFSK-IEKDKFF 266 >gi|312262712|gb|ADQ53007.1| conserved hypothetical protein [Aeromonas phage PX29] Length = 347 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 13/190 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD +MN +D D + D ++ K P + + + + Sbjct: 5 LVGGAVRDMVMNREPKDRDYVVVGSTHDEMIAKGYKQVGADFPVYLDHLGQEYALARTER 64 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +D +TD V +D K RRDFT+NA+ G V+D G D+++R Sbjct: 65 STGKGYNDFVTDFN-PNVTLEQDLK----RRDFTMNAMALGLNGVVVDPYNGQQDIKDRV 119 Query: 150 IKFIG-DAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSERIW 206 + + A H ED +R+LR RF A Y + + + ++ IK + ++ L+SERIW Sbjct: 120 VNVVNPQAFH---EDPVRVLRACRFAARYDFRLSTLTMECILRCIKDGR-MEHLTSERIW 175 Query: 207 SEINKLLEAK 216 E K +K Sbjct: 176 LEFEKSFGSK 185 >gi|317485556|ref|ZP_07944433.1| poly A polymerase head domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923236|gb|EFV44445.1| poly A polymerase head domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 601 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 81/360 (22%), Positives = 147/360 (40%), Gaps = 50/360 (13%) Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGG 141 ++ D+ T R + V K D RRDFTINA L Q G ++D+ GG Sbjct: 241 EQRLDVATARLEYYKYPAALPTVELSSIKMDLFRRDFTINAMALRLNKGQFGCLVDFFGG 300 Query: 142 LNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLK 198 +D++ +TI+ I H + +ED RI+R RF YG + + L+ + + ++ Sbjct: 301 QSDIQRKTIRII----HALSFVEDPTRIIRAVRFEQRYGFHISTQGEKLIKNALSLNLVE 356 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF------LDVQEISLDQLSQVIEA 252 LS RI E+N + P + + G+ I D E+ LD L +VI+ Sbjct: 357 KLSGARILHELNLIFREDEPETCLRRLNELGVLAAIHPSLVLNADKNEL-LDSLREVIDW 415 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMA--------------KKFSLPREIRYFLISF 298 ++ +K L + L++ + A + SL +R L+ Sbjct: 416 YRLLYFKETPELSTLYLMALCSAVPAIETADILHRLGLTPTMREEILSLRESVRMTLVEL 475 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH- 357 N + + + E + + ++L + D I +S I+ Sbjct: 476 INWHRDTQKKGQAEQSVSRLCALLAPLPLESTLYL------MARSDNEEISSSVSQYIYK 529 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNIL-------VHCKQEWINSSFQLSQEDLHHLLRK 410 W++ + GDD+ + G+ PG + G+++ + K E + +L++E L+RK Sbjct: 530 WRQIKVDINGDDLHRLGLEPGPQFGSVMRMVLAAKLDGKAETREAQLKLAEE----LIRK 585 >gi|242279512|ref|YP_002991641.1| polynucleotide adenylyltransferase region [Desulfovibrio salexigens DSM 2638] gi|242122406|gb|ACS80102.1| Polynucleotide adenylyltransferase region [Desulfovibrio salexigens DSM 2638] Length = 387 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 23/209 (11%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 I GG++RD L+ S +D+D + + P+ + F K R P SY + K Sbjct: 12 IAGGSIRDLLLGRSPKDLDYLIASGSPEEFLAAFPKAR----PVGKSYEIFYL----KGL 63 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 + + R+ G D KA RDFT+N+ D+ G++ + GL DLRNR Sbjct: 64 EFSFPRAK----GNNTDETIDLDLKA----RDFTVNSFALDEDGELYAHPNGLEDLRNRV 115 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG---LKILSSERIW 206 ++ ED LR+ R F + + E + + L+A +K L ++ +RI Sbjct: 116 LR--PSFPDTFKEDPLRVFRAATFISRFPEFSPHPE-LIAEMKRCADNDWLADIAPDRIG 172 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E+ K L P N + + G + F Sbjct: 173 VELRKALSGPKPGNFLRLLIQGNCLEPWF 201 >gi|323697833|ref|ZP_08109745.1| tRNA cytidylyltransferase [Desulfovibrio sp. ND132] gi|323457765|gb|EGB13630.1| tRNA cytidylyltransferase [Desulfovibrio desulfuricans ND132] Length = 381 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 27/196 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K + GGAVRD L+ + D D VM + + P + G + Sbjct: 2 KVYLAGGAVRDLLLGRPIHDRDYL-------VMDATREEFRRAFPQAREVGRTFPVFLVD 54 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 + + R+D + + + KA RD T+NA D+ G+VI + G +DL Sbjct: 55 NIEFSFPRADSLDE----------ELKA----RDLTVNAQLLDEHGEVIFHPQGFDDLEA 100 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK---KGLKILSSER 204 R ++ + H + +D LR+LR RF A + + L+ +++A GL +S++R Sbjct: 101 RILRPA--SSHSLADDPLRVLRAARFSAQLPDFTAHQE-LIEAMRAVGRCGGLAAVSADR 157 Query: 205 IWSEINKLLEAKNPLN 220 + E+ K LE+ P N Sbjct: 158 VVPELRKALESPRPGN 173 >gi|147677571|ref|YP_001211786.1| hypothetical protein PTH_1236 [Pelotomaculum thermopropionicum SI] gi|146273668|dbj|BAF59417.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 873 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 10/201 (4%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-FD 90 GG VRD L+ + DID+ + R + + + T ++ ++ D Sbjct: 481 AGGIVRDLLLGMECLDIDLVVEGDGIELARALGQDYGARVRVHQKFKTATVLLPGEWQVD 540 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLR 146 + T R + + D RRDFTINA+ D G+V+D+ GG DL+ Sbjct: 541 VATARMEFYQYPAAMPQIEASSLHQDLYRRDFTINAMAVSLNRDDFGEVVDFFGGREDLQ 600 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSSER 204 I+ + + +ED R+LR RF Y +++ L + +A K L +S ER Sbjct: 601 RGLIRVLHNLS--FVEDPTRLLRGIRFEKRY-NMSLEPQTLKLAQEAIRSKMLARVSRER 657 Query: 205 IWSEINKLLEAKNPLNAIVHM 225 IW E+ +L P A+ + Sbjct: 658 IWEELKCILLEPRPGPALARL 678 >gi|255075261|ref|XP_002501305.1| predicted protein [Micromonas sp. RCC299] gi|226516569|gb|ACO62563.1| predicted protein [Micromonas sp. RCC299] Length = 712 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 20/224 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIA--TTILPDRVMRIFSKTRYKVIPT------------SIS 76 + GG VRD L+ DIDIA T + + ++ + K T S Sbjct: 174 VAGGWVRDKLLGKHSSDIDIALDTMMGEEFAAKVNEYLQEKGEETHGVGVIQSNPDQSKH 233 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 T + ++ D+ LRS+ T+ + D+ RRD TIN+L+ + + + Sbjct: 234 LETATMRVHGQWLDLVNLRSEEYTEASRIPEMKFGSATDDAYRRDLTINSLFYNINLRCV 293 Query: 137 -DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 D+ G GL DL++ ++ L+D LRILR RF + +G ++D + A+ A+ Sbjct: 294 EDFTGMGLKDLQDGVVRTPLPPRTTFLDDPLRILRSVRFASRFG-FSLDDAIVHAATDAE 352 Query: 195 KGLKILSS---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K+LS ER+ E+ +L +P +A+ + +F +F Sbjct: 353 VQEKLLSKVSRERVGKEVQGMLRGPSPGDALSLLCRFNLFDTVF 396 >gi|255527294|ref|ZP_05394174.1| Polynucleotide adenylyltransferase region [Clostridium carboxidivorans P7] gi|255509032|gb|EET85392.1| Polynucleotide adenylyltransferase region [Clostridium carboxidivorans P7] Length = 341 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 6/133 (4%) Query: 111 RDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + + D +RDF+INA+ + K+ID G + R I+ + D I ED +RILR Sbjct: 92 KSIEEDLSKRDFSINAISLKLIENKIIDPFNGRKAIECRIIQNVSDTS--IEEDPIRILR 149 Query: 170 FFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 RF YG N++++ + + K LK + ER+++E+ KL+E N A + N Sbjct: 150 GIRFCIRYGMHFNLETEKKIVDLSCK--LKSCNKERLFTELMKLMEVDNNGRAFEVLDNY 207 Query: 229 GIFKEIFLDVQEI 241 G+ K IF ++E+ Sbjct: 208 GVLKNIFPYMEEL 220 >gi|313680041|ref|YP_004057780.1| polynucleotide adenylyltransferase region [Oceanithermus profundus DSM 14977] gi|313152756|gb|ADR36607.1| Polynucleotide adenylyltransferase region [Oceanithermus profundus DSM 14977] Length = 820 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/391 (22%), Positives = 157/391 (40%), Gaps = 47/391 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFSKTRYKVIPTSISYGTIKI-ICRKKY 88 +VGGAVRD+L+ S D+D+ L P V R ++ ++GT + Sbjct: 459 LVGGAVRDALLGESSPDVDLVLEGLDPGEVARFLTRRFGGSYGVHFAFGTAHARLGTGVE 518 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY---ADQQGKVIDYVGGLNDL 145 D+ T R + V D RRDFT+NA+ A +ID GGL+DL Sbjct: 519 VDLATAREEEYPSPGALPRVRPSTLNRDLARRDFTVNAMAYRIAPPPEALIDPFGGLHDL 578 Query: 146 RNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSS 202 R ++ + H + +ED R+LR R A G + + +++ + ++ K+ ++ Sbjct: 579 EARMLRPL----HPLSFIEDPSRVLRGLRLAARLGFRFHPEAERQIEELR-KRPPGSAAT 633 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 R+ E+ L +PL + G+ + ++ + + + +EA++ Sbjct: 634 SRLRRELMLALAEPSPLRVLRLAERYGLLEALYGFRPDPEVWAALERLEAQKPERSVPPE 693 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 +++L+S D ++++ ++F P+ RY + + ++ PE Sbjct: 694 AYLYLLLLSSPDPEALV---RRFGWPQ--RYLV----HLGMLRQPPDRPE---------- 734 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-KPLFPLTGDDVVKYGIPPGKKV 381 AL D W KP L G D+++ G+ PG V Sbjct: 735 -----------ALREGG--EALALAFAARFPDRAEWVWKPTRRLRGRDLIELGMEPGPAV 781 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 G IL + +E+L L RKL+ Sbjct: 782 GRILREVEAARARGEVSGYEEEL-TLARKLM 811 >gi|296188349|ref|ZP_06856741.1| HD domain protein [Clostridium carboxidivorans P7] gi|296047475|gb|EFG86917.1| HD domain protein [Clostridium carboxidivorans P7] Length = 405 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 6/130 (4%) Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D +RDF+INA+ + K+ID G + R I+ + D I ED +RILR R Sbjct: 95 EEDLSKRDFSINAISLKLIENKIIDPFNGRKAIECRIIQNVSDTS--IEEDPIRILRGIR 152 Query: 173 FFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 F YG N++++ + + K LK + ER+++E+ KL+E N A + N G+ Sbjct: 153 FCIRYGMHFNLETEKKIVDLSCK--LKSCNKERLFTELMKLMEVDNNGRAFEVLDNYGVL 210 Query: 232 KEIFLDVQEI 241 K IF ++E+ Sbjct: 211 KNIFPYMEEL 220 >gi|326391069|ref|ZP_08212616.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter ethanolicus JW 200] gi|325992854|gb|EGD51299.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter ethanolicus JW 200] Length = 388 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 103/418 (24%), Positives = 184/418 (44%), Gaps = 73/418 (17%) Query: 11 HDSDLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF------ 63 ++ DLI +L ++ K + KS IVGG VRD L L V+++DI + D + + Sbjct: 6 NEIDLIKLLKEISLKTKIKSYIVGGVVRDFL--LGVKNLDIDVVVEGDGIEFAYILLSYL 63 Query: 64 --SKTRYKVIPT-SISYGTIK---IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 Y+ T ++SY I I RK+Y++ + F+ + D Sbjct: 64 KGDIVVYEAFRTATLSYDGISIDVISARKEYYE---------RPAALPTIEFSNIYD-DM 113 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHR-ILEDYLRILRFFRFFA 175 RRDFTIN L D + K++DY GL DL+ I+ + H + ++D RI R R+ Sbjct: 114 ARRDFTINTLAYDVIEEKILDYFNGLEDLKKGLIRVL---HPKSFIDDPTRIFRAIRYAT 170 Query: 176 HYG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL---EAKNPLNAIVHM-YNGGI 230 Y E + L+ ++ + +++LS++RI +EI +L +AK ++ +++ + I Sbjct: 171 RYSFEIEEKTHNLMK--ESIENIRLLSADRIRNEIFLILKESKAKEMIDKLIYYSIDKVI 228 Query: 231 FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 F I L+ Q LD + +E E L RF+VL + +K I + K+ + + Sbjct: 229 FDGITLNTQ--HLDTVYVNLEIE---------LYRFLVLFYYLKEKDINEIEKRLRINKI 277 Query: 291 IRYFL--ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + F N + +I +I++ ++V+ A Sbjct: 278 YLKALKDLVFLREQLNCQNKNIRKIRETIEETKEEVLKA--------------------- 316 Query: 349 LQVLSDIIHWK--KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++V+ K K + G D+ G+PPG G ++ + + IN E++ Sbjct: 317 IEVMEGEKAEKIIKGKLTVKGKDIENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374 >gi|294941628|ref|XP_002783160.1| tRNA nucleotidyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239895575|gb|EER14956.1| tRNA nucleotidyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 511 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 88/202 (43%), Gaps = 20/202 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK---TRYKVIPTSISYGTIKI------ 82 GG VRD L+ DIDIA + K TR + S G ++ Sbjct: 46 AGGWVRDKLLGKESDDIDIAVDDMSGEAFAYKVKDFLTRTSPGASCSSVGVVRANPDQSK 105 Query: 83 ---ICRKKYFDIT----TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGK 134 + FDI+ LR++ T VV + D+ RRDFTINAL+ + + Sbjct: 106 HLETATLRVFDISLDVNNLRTETYTLDSRIPVVALGTPQEDASRRDFTINALFYNLRTAS 165 Query: 135 VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 V D+ G GL+DLR I+ + +D LRILR RF G K D AS Sbjct: 166 VEDFTGTGLDDLRAGVIRTPLEPTITFQDDPLRILRAVRFSTRLGFKLDDEIMKAASDPN 225 Query: 194 KKGLKI--LSSERIWSEINKLL 213 GL + +S ER EI+K+L Sbjct: 226 IYGLLLVKVSRERWGVEIHKML 247 >gi|38640230|ref|NP_944186.1| hypothetical protein Aeh1p308 [Aeromonas phage Aeh1] gi|33414915|gb|AAQ17958.1| hypothetical protein Aeh1ORF289c [Aeromonas phage Aeh1] Length = 347 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 13/190 (6%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD +MN +D D + D ++ K P + + + + Sbjct: 5 LVGGAVRDMVMNREPKDRDYVVVGSTHDEMIAKGYKQVGADFPVYLDHLGQEYALARTER 64 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +D +TD V +D K RRDFT+NA+ G VID G D++ R Sbjct: 65 STGKGYNDFVTDFN-PNVTLEQDLK----RRDFTMNAMALGMNGVVIDPYNGQQDIKERV 119 Query: 150 IKFIG-DAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSERIW 206 + + A H ED +R+LR RF A Y + + + ++ IK + + L+SERIW Sbjct: 120 VNVVNPQAFH---EDPVRVLRACRFAARYDFRLSTLTMECILRCIKDGR-MDHLTSERIW 175 Query: 207 SEINKLLEAK 216 E K K Sbjct: 176 LEFEKSFGTK 185 >gi|189485160|ref|YP_001956101.1| CCA-adding tRNA nucleotidyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287119|dbj|BAG13640.1| CCA-adding tRNA nucleotidyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 461 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 123/258 (47%), Gaps = 43/258 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDI-----ATTILPDRVMRIFSK---TRYKVIPTSI--SYGTI 80 IVGG VRD + +D+DI + + FSK +YK+ I +GT Sbjct: 30 IVGGFVRDLFIKREPKDLDIMVCGRGSNLSMQSAGINFSKILAKKYKLDKPVIFERFGTS 89 Query: 81 K----------IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 K ++ R++Y++ + D + A V + D+LRRDFTINAL+ Sbjct: 90 KLFMDSEEVEFVMPRREYYNANSRNPD----TQIASV------EQDALRRDFTINALFLR 139 Query: 131 -QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRIL--EDYLRILRFFRFFAHYGEKNIDSDG 186 K++D+ G+ D++N+ I+ ++ I+ +D LRILR R K I+++ Sbjct: 140 LNDMKILDFTSQGVVDIKNKIIRVTDPSNIEIIFKQDPLRILRAVRQSVQLDFK-IETET 198 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 A + ++I+S ERI EINK+L K P A I EI L V+ L ++ Sbjct: 199 YNAMKISSPSIEIVSPERIRDEINKILIEKIPSKAF------KIMDEINLSVK--ILPEV 250 Query: 247 SQVIEAEQVFEWKIDSLL 264 +++ EQ+ ++ D + Sbjct: 251 ARLKNLEQLEKYHTDDVF 268 >gi|325284627|ref|YP_004264090.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Deinococcus proteolyticus MRP] gi|324316116|gb|ADY27230.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Deinococcus proteolyticus MRP] Length = 500 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 92/226 (40%), Gaps = 24/226 (10%) Query: 13 SDLINILSLLNKGEDKSC---IVGGAVRDSLMNLSVQDIDI---ATTILPDRVMRIFSK- 65 +D + L E C +VGGAVRD L + D+D+ + PD + + + Sbjct: 17 ADFPTLRELCGALEGSGCELYLVGGAVRDRLRGVVGSDLDLLVRHPQLDPDALEDLLRRR 76 Query: 66 -TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFT-RDWKADS------ 117 V+ S+ +K+ ++ D+ L S D V T W +D Sbjct: 77 LAPAPVLGVGASFRVLKVKWAGEWLDLA-LPSRAALDAATGAVTGTGPGWLSDPRLPLTD 135 Query: 118 --LRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 RRDFT+NAL + D GG DL ++ G A R+ ED LR+LR Sbjct: 136 DLARRDFTVNALALRLCPTGTDDLADPFGGRADLEAGRLRASGSAAERLAEDPLRLLRAA 195 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 RF A D++ A+ L ++ ER+W E KL + Sbjct: 196 RFAAQG--LTPDAELTAAARALAPRLAEVAPERLWREWLKLFAGPH 239 >gi|206901253|ref|YP_002251206.1| polyA polymerase family protein [Dictyoglomus thermophilum H-6-12] gi|206740356|gb|ACI19414.1| polyA polymerase family protein [Dictyoglomus thermophilum H-6-12] Length = 845 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 76/154 (49%), Gaps = 11/154 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTRYKVIPTSISYGTIKIICRK-KYF 89 +GG VRD L+ S D+DI ++ +I K KVI T +GT +II K Sbjct: 475 IGGFVRDLLLGQSNFDLDIVVEGDIQLIISKIMDKWEGKVI-THPQFGTSEIILSDGKRI 533 Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 DI T R + + G KV + W D RRDFTINAL + G++ID GGL D Sbjct: 534 DIATARIEHYEEPGSLPKVERSSLW-LDLKRRDFTINALAMSLNEENFGEIIDLYGGLED 592 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 L + ++ + + +ED RILR R A G Sbjct: 593 LTRKELRILHNLS--FVEDPTRILRGIRLEARLG 624 >gi|166710584|ref|ZP_02241791.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 410 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 8/108 (7%) Query: 116 DSLRRDFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D LRRDFTINA+ D+ G++ D G DL+ ++ +G A +ED +R+LR RF Sbjct: 87 DLLRRDFTINAIARDEDTGELFDPHNGARDLQACVLRHVGPA---FVEDPVRVLRAARFM 143 Query: 175 AHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 A ++ L+ + A L L ER+W E+ + L P Sbjct: 144 ARLAPLGFTIAPETAALMREMAASGELDSLVPERVWQELRRALTCAQP 191 >gi|307152170|ref|YP_003887554.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7822] gi|306982398|gb|ADN14279.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7822] Length = 412 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 49/247 (19%) Query: 29 SCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +C+VGGAVRD+L+N D+D L R +KT C Sbjct: 26 ACLVGGAVRDALLNRQRDYLDLDFVVPQLAVETAREIAKT-----------------CHA 68 Query: 87 KYFDITTLRSDLITDGRYAKVVFT-----------RDWKADSLRRDFTINAL-YADQQGK 134 + + R + A++VFT ++D RRDFTINA+ Y + Sbjct: 69 GFVILDQQR-------QIARIVFTDATVDFALQEGETVESDLHRRDFTINAIAYNPHTSE 121 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSD-GLVAS 190 +ID + GL DL ++ + ++ + +D LR+LR +R A E S L+A Sbjct: 122 LIDPLNGLKDLEQGILRMVSQSN--LEDDPLRLLRAYRQAAQLHLTIEPTTRSTIALLAP 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L +++ER+ +E+ LL ++ + GI + ++ + L+Q+ Sbjct: 180 L-----LSQVAAERVQTELGYLLSHPQGTYWLIEAWKDGILQPWLKNITSEKVQLLTQIE 234 Query: 251 EAEQVFE 257 + Q + Sbjct: 235 PSAQALQ 241 >gi|297816090|ref|XP_002875928.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321766|gb|EFH52187.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 610 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTSISYGTIKIICR 85 +VGG VRD ++ + +D DI T+ V+R FS+ R+ + + I++ Sbjct: 95 LVGGCVRDLILKRTPKDFDILTSAELREVVRTFSRCEIVGKRFPICHVHVGNEMIEV--- 151 Query: 86 KKYFDITTLRS--DLITDGRYAKVVFTRDWKA--DSLRRDFTINALYADQQGKVI-DYVG 140 F + S ++ T + + D + L+RDFTIN L D +V+ DY+G Sbjct: 152 -SSFSTSAQNSPRNMRTGSGKSNGSYDEDNTRLNNCLQRDFTINGLMFDPYAEVVYDYLG 210 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 G+ D++ I+ + A ED RILR R A G Sbjct: 211 GIEDIKKAKIRTVFHAGTSFQEDCARILRGTRIAARLG 248 >gi|150864973|ref|XP_001384007.2| hypothetical protein PICST_31221 [Scheffersomyces stipitis CBS 6054] gi|149386229|gb|ABN65978.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 559 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 26/228 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII------- 83 I GG VRD L+ DIDIA +V + I I Sbjct: 43 ITGGWVRDKLLGNHSNDIDIAVNHQSGEQFASNLHEYLRVHNPELHLKAIHTIKKNPEKS 102 Query: 84 -----CRKKYF----DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 C K F D LRS+ +D ++ + D+ RRD T+N+L+ + + Sbjct: 103 KHLETCTTKLFGMDIDFVNLRSEEYSDDSRVPIIKFGTPEEDAYRRDATLNSLFFNLNKN 162 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLV 188 ++ D+ G GL DL++ ++ + L+D LR+LR RF + + K +++ + Sbjct: 163 EIEDFTGKGLQDLQDGVLRTPLEPLQTFLDDPLRVLRLIRFASRFNFIVEPKTLEA---M 219 Query: 189 ASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S + ++ L +S ERI E+ K+ +KNP + + ++ IF Sbjct: 220 TSPEIRESLTTKISKERIEVELLKIFTSKNPSYGLRLINYANLYSRIF 267 >gi|315635816|ref|ZP_07891078.1| tRNA nucleotidyltransferase/poly(A) polymerase [Arcobacter butzleri JV22] gi|315479795|gb|EFU70466.1| tRNA nucleotidyltransferase/poly(A) polymerase [Arcobacter butzleri JV22] Length = 324 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Query: 113 WKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 +K ++RRDFTINA+ Y + +++D GG+NDL+N+ IK I D +ED LR+ R Sbjct: 38 FKEAAIRRDFTINAIGYEYFKNEILDPFGGMNDLKNKIIKHIDD--KTFVEDSLRVYRSV 95 Query: 172 RFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWSE 208 +F + + E ID + L I + LK L ER++ E Sbjct: 96 QFASRF-EFKIDENTKILCKKIVSSGELKFLPKERVFEE 133 >gi|327398483|ref|YP_004339352.1| polynucleotide adenylyltransferase region [Hippea maritima DSM 10411] gi|327181112|gb|AEA33293.1| Polynucleotide adenylyltransferase region [Hippea maritima DSM 10411] Length = 466 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 98/232 (42%), Gaps = 25/232 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT----TILPDRVMRIFSKTR 67 D L I ++ K + +VGGA+RD+L+ D D L V +F Sbjct: 7 DIYLTEIAAIAKKLNTEIYLVGGAIRDALLKRQTNDYDFVVFGDIEGLAKAVAHLFG--- 63 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K + + T ++ C+ K D + R ++ + D RDFTIN++ Sbjct: 64 CKTVKYNKKLLTYRVFCKIKTLDFSAPRG--------------KNIQEDLKFRDFTINSI 109 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 D +ID +G DLR IK ++ + I ED LRILR FR A + +ID Sbjct: 110 AFDLNSNTLIDPLGAKEDLRKGIIK--ANSPNSIKEDPLRILRGFRLAALF-RFDIDPRT 166 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ K + L +S ERI E+ ++ M GI +F D+ Sbjct: 167 ILLFRKHVELLNRVSKERITQELKLFFNLNETFTYLLIMDKVGIIDTLFEDL 218 >gi|302764534|ref|XP_002965688.1| hypothetical protein SELMODRAFT_407286 [Selaginella moellendorffii] gi|300166502|gb|EFJ33108.1| hypothetical protein SELMODRAFT_407286 [Selaginella moellendorffii] Length = 427 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 29/211 (13%) Query: 39 SLMNLSVQDIDIATTILP-----DRVMRIFSKT----RYKVIPTSISYGTIKIICRKKYF 89 L+ + D+DIA + DRV+ KT YKVI ++ R K+ Sbjct: 29 ELLGVESHDLDIALDDMTGQQFCDRVLPCLRKTDPLCSYKVIKSNPE--------RSKHL 80 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVG-GLNDLRN 147 + T L I G K + D+ RD TIN+L+ + KV D+ G G+ DL+ Sbjct: 81 ETTKLE---ILGGELDKFGTPSE---DAYGRDLTINSLFYNVAADKVEDFTGRGVMDLKL 134 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILSSER 204 I+ L+D LR+LR RF A + ++ ++ V S+KA KI + ER Sbjct: 135 GKIRTPLPPLVTFLDDPLRVLRSIRFAARFNFELDEELECVASVDSVKAAFETKI-TRER 193 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I EI +L KNP A+ ++ G + IF Sbjct: 194 ISQEIQAMLFGKNPARAMCLLHKLGYWPLIF 224 >gi|293394530|ref|ZP_06638826.1| polyA polymerase [Serratia odorifera DSM 4582] gi|291422995|gb|EFE96228.1| polyA polymerase [Serratia odorifera DSM 4582] Length = 355 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 114 KADSLRRDFTINALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTIN+LY AD + DYVGG+ DL+ I+ IGD R ED +R+LR Sbjct: 45 EEDAQRRDFTINSLYYGVAD--FTLRDYVGGMRDLQQGVIRLIGDPETRYREDPVRMLRA 102 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A + I ++ + L + R++ E KLL++ + + + Sbjct: 103 VRFAAKL-DMTISNETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGFPTYLKLCEYQL 161 Query: 231 FKEIF 235 F+ +F Sbjct: 162 FQPLF 166 >gi|71027783|ref|XP_763535.1| tRNA nucleotidyltransferase [Theileria parva strain Muguga] gi|68350488|gb|EAN31252.1| tRNA nucleotidyltransferase, putative [Theileria parva] Length = 605 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 110/239 (46%), Gaps = 32/239 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ + +DIDIA T I + F+K +Y S + G +K + Sbjct: 171 VVGGWVRDKLLDKNNKDIDIAIPKMTGIKFCEYLNNFTKDKYGF---SRTVGVVKRCPEQ 227 Query: 87 -KYFDITTLR--------SDLITDGRYAKVVFTRDWK-----ADSLRRDFTINALYADQQ 132 K+ + T+ +L T+ Y+ D K D++RRDFT+N+L+ + Sbjct: 228 SKHLETATMNLLGFDVDFVNLRTED-YSSNTRIPDMKIGTPLEDAMRRDFTVNSLFYNIS 286 Query: 133 GKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 I D+ G GL DL+N I+ ++D LR++R RF + + N + D + Sbjct: 287 KNFIEDFTGTGLEDLKNGIIRTCSSPFETFMDDPLRLIRAVRFSSRF---NFELDEKLTD 343 Query: 191 IKAKKGLKILSSE----RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++ LK LS + RI EI +L + A MY I + L+V D+ Sbjct: 344 SINEQVLKALSQKVTRPRISQEIENILLKSDVSEAFNLMYKFKIL-HVLLNVPPYDYDE 401 >gi|332184720|gb|AEE26974.1| tRNA nucleotidyltransferase [Francisella cf. novicida 3523] Length = 368 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 34/199 (17%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ ++ +D D + D ++ + G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEML---------------ANGFIKIPANFPVF 49 Query: 90 -------DITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDY 138 + RS+ T Y +V F+++ + D RRD TIN++ DQ KVID Sbjct: 50 IHPQTKQEYALARSEKKTANGYHGFEVNFSKNISLEEDLKRRDLTINSIAIDQNNKVIDP 109 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAK 194 G DL+NR ++ A +ED LR++R RF A N ++ LV + Sbjct: 110 FNGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLSNFNFSIAQETHTLVKELVKS 166 Query: 195 KGLKILSSERIWSEINKLL 213 L L+ ER+ E K L Sbjct: 167 GELNHLTRERLHIEFIKAL 185 >gi|51246762|ref|YP_066646.1| poly(A) polymerase [Desulfotalea psychrophila LSv54] gi|50877799|emb|CAG37639.1| related to poly(A) polymerase [Desulfotalea psychrophila LSv54] Length = 501 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 30/234 (12%) Query: 11 HDSDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTI----LPDRVMRIFSK 65 + D++ L +++ D + GG VRD + S +D+D+ T R++R + Sbjct: 28 YSPDIVTALFAVSRQLDAEVWVAGGPVRDYFLGRSAKDLDLVTGAGAIDFCRRLLRQLGE 87 Query: 66 TRYKVIPTSIS-YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 ++P S +I+ R + DI++ R+ + D RDFT+ Sbjct: 88 G--SLVPLSEGDEEACRIVYRHEIVDISSFRAS------------ASSLEEDLALRDFTL 133 Query: 125 NAL------YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NA+ ++ +ID G +DL ++ ++ + +A R D LRILR FRF + + Sbjct: 134 NAMALPLSTLRGEKVDLIDPFSGRDDLADKILRPLPEAFGR---DPLRILRAFRFQSLF- 189 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 + D A I + L +++ERI +E++ L + L A+ M + GI + Sbjct: 190 SLSFDPAIAPAIIAHRHLLSGVAAERISAELDATLMGTSALEALAGMEDLGILE 243 >gi|294508469|ref|YP_003572527.1| tRNA nucleotidyltransferase [Salinibacter ruber M8] gi|294344797|emb|CBH25575.1| tRNA nucleotidyltransferase [Salinibacter ruber M8] Length = 562 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 30/238 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATT------ILPDRVMRIFSKTRYKVIPTSISYGT-- 79 ++ VGG VRD L+ S D+D T L + V V P +GT Sbjct: 39 EAYAVGGMVRDVLLGRSTTDLDFVTVGPETGIALAEAVGEALGGRTAHVYP---KFGTAA 95 Query: 80 IKIICRKKYFD-----------ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA-- 126 ++I D + + +D R +V + D RRDFT+NA Sbjct: 96 LRIPAADALPDDHPDDALVLEFVAARKESYRSDSRKPEVEAGT-LEDDQYRRDFTVNAMA 154 Query: 127 --LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 L D+ G ++D G DL +TI D +D LR++R RF E + S Sbjct: 155 IHLTPDRFGVLLDPFDGRRDLERQTIDTPLDPADTFEDDPLRMIRAARFATQL-EFRV-S 212 Query: 185 DGLVASIKAKK-GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + ++ A+ ++ILS ERI E++K+LEA P + G+ + ++Q + Sbjct: 213 DRVFDAMGAQAHRVEILSQERITEELHKMLEADTPSIGFKILEASGVLAHVMPEIQRL 270 >gi|157364565|ref|YP_001471332.1| CBS domain-containing protein [Thermotoga lettingae TMO] gi|157315169|gb|ABV34268.1| CBS domain containing protein [Thermotoga lettingae TMO] Length = 875 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 16/217 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 VGG VRD LM DIDI L D R K K++ + T + C+ Sbjct: 482 VGGFVRDLLMGNPNYDIDIVVEKDGLSLADLAAR---KLNAKLVKYE-KFLTASLFCKDG 537 Query: 88 Y-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--DQQ--GKVIDYVGGL 142 D+ T R++ V K D RRDFTINA+ +Q+ G +ID+ G Sbjct: 538 LRIDVATARTEYYEAPTELPQVEVSTIKKDLYRRDFTINAMAIKLNQKDFGLLIDFFGAK 597 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILS 201 DL ++ I+ + +ED RILR RF +G K + +G L+ +S Sbjct: 598 KDLDSKLIRCLHTLS--FVEDPTRILRAVRFETRFGFKIEQQTARLMLDAVHQGYLEKVS 655 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +R+ E K+LE K+ A+ + + + K +F V Sbjct: 656 GQRLRQEFEKILEEKSVFEALKRLSDFEVIKHMFPGV 692 >gi|159478320|ref|XP_001697252.1| tRNA-nucleotidyltransferase, mitochondrial [Chlamydomonas reinhardtii] gi|158274726|gb|EDP00507.1| tRNA-nucleotidyltransferase, mitochondrial [Chlamydomonas reinhardtii] Length = 200 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 19/165 (11%) Query: 32 VGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVI-----PTSISY 77 GG VRD L+ DIDIA ++ D + + R+ + S Sbjct: 28 AGGWVRDKLLGRGSDDIDIALDDCLGKDFAELVNDWLKSQGREARHAAVIHSNPDQSKHL 87 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYAD--QQGK 134 T ++ + + D+ LRS+ D R + F + D+LRRDFTINAL+ + G Sbjct: 88 ETARMKVGEVWLDLVNLRSETYAADSRIPTMTFGTP-QQDALRRDFTINALFYNISAGGV 146 Query: 135 VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 V D G GL DLR+ I+ L+D LR+LR RF +G Sbjct: 147 VEDLTGRGLQDLRDGLIRTPLPPMETFLDDPLRVLRAVRFGTRFG 191 >gi|270340141|ref|ZP_06007176.2| polyA polymerase [Prevotella bergensis DSM 17361] gi|270332525|gb|EFA43311.1| polyA polymerase [Prevotella bergensis DSM 17361] Length = 509 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 13/210 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-----IPTSISYGTIKIICR 85 +VGG VRD + DID+ ++ + + +K R + + ++GT ++ R Sbjct: 36 VVGGYVRDLFLQRPSDDIDV---VVVGSGIEVATKLRQLLGGKAHLTVFRNFGTAQVKFR 92 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGG 141 + R + + V + D RRDFTINA L ++ G+++D G Sbjct: 93 GIEVEFVGARKESYSHDSRKPHVEDGTLEDDQNRRDFTINAMAVCLNRERFGELVDPFDG 152 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L D+ + I+ D +D LR++R RF + I+ + A + + +KI+S Sbjct: 153 LADMEDGIIRTPLDPDITFSDDPLRMMRCVRFATQL-KFYIEDETFEALERNAERIKIIS 211 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 ERI +E+NK++ + P V + G+ Sbjct: 212 GERINTELNKIMLSDQPSRGFVDLQRCGLL 241 >gi|167005417|ref|ZP_02271175.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 343 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 41/245 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD + L + D DI I P +I K + +G +C+ K + Sbjct: 1 MVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKL------GAQGFGKSFFVCKFKNY 54 Query: 90 DITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLN 143 D+ R++ I+ G +V D K + RRDFTIN+ L+ D+ +D+ GGL Sbjct: 55 DLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDE---FLDFYGGLK 111 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LS 201 DL ++ I + ED LR+LR F + + K I S+ S+K + + I LS Sbjct: 112 DLGAGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-ITSE----SLKLMQSMDITDLS 164 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF-EWKI 260 +RI +E+ K K+P + + Y +QE+ L++ Q+ E VF + Sbjct: 165 KDRINAELCKFF--KSPRLDVGYRY-----------LQELGLEK--QIFGFESVFMSLEF 209 Query: 261 DSLLR 265 +LLR Sbjct: 210 QNLLR 214 >gi|91228642|ref|ZP_01262559.1| polyA polymerase [Vibrio alginolyticus 12G01] gi|91187825|gb|EAS74140.1| polyA polymerase [Vibrio alginolyticus 12G01] Length = 318 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 116 DSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTIN++Y + I DY G+ DL +R I+ IGD R ED +R+LR RF Sbjct: 11 DAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFA 70 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + +I+ D L + S R++ E KLL++ + L + +F+++ Sbjct: 71 VKL-DFDIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQL 129 Query: 235 F 235 F Sbjct: 130 F 130 >gi|75910037|ref|YP_324333.1| polynucleotide adenylyltransferase region [Anabaena variabilis ATCC 29413] gi|75703762|gb|ABA23438.1| Polynucleotide adenylyltransferase region [Anabaena variabilis ATCC 29413] Length = 422 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 146/342 (42%), Gaps = 70/342 (20%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPD--RVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+++ S + +D+ I D +V R + RY+ + Sbjct: 27 MVGGAVRDAMLGRSREYLDLDFVIPSDAVKVARTIAH-RYQA----------------GF 69 Query: 89 FDITTLRSDLITDGRYAKVVF---TRDW---KADSL-----RRDFTINAL-YADQQGKVI 136 + +R R A+VVF T D+ + DSL RRDFT+NA+ Y ++I Sbjct: 70 VLLDPVR-------RIARVVFPQATADFAQQEGDSLETDLHRRDFTVNAIAYNPHTQEII 122 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D + G DL+ ++ I A+ + +D LR+LR +R A G I+ A Sbjct: 123 DPLNGCADLQAGVLRMIAKANLK--DDPLRLLRAYRQAAQLG-FTIEPATQAAIRDLASQ 179 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L +++ER+ EI LL + + N G+ K+ F + S +L+ V E + Sbjct: 180 LCQVAAERVRVEIGYLLASPQGHTWMAIAENDGLLKQFFPNTTPESFRKLAVVDEVADLL 239 Query: 257 --EW-----KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 W ++ +R V +W L +AK L + + + Sbjct: 240 TKHWPQLGAELQGYVRETVKTTW------LGIAKLACL-------------VHPDPRVAE 280 Query: 310 IPEIKKLFYLYGD-KVMIAKLKIFLALHYNNLTHQDTCFILQ 350 I E++KL Y + + + LK+F L N T ++ F+ Q Sbjct: 281 I-ELQKLTYSRAEIRAVTTALKLFPQLKTAN-TQREQYFVFQ 320 >gi|253699960|ref|YP_003021149.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter sp. M21] gi|251774810|gb|ACT17391.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter sp. M21] Length = 416 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 + GG VRD L+ + QDID+A + + + ++++ S S I R+ + Sbjct: 22 LTGGMVRDFLLGVECQDIDLAAAV----PAAVLASLGFRLV-ESKSTPNIYFSYREDFGK 76 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 I R + + + AD RRDF +NA+ G +ID +GG DL R + Sbjct: 77 IEVTRLESV-----------EELTADLHRRDFRVNAMAMSLDGALIDPLGGKADLEKRVL 125 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 + A I +D LRI R FRF + +++ L+AS + ER E+ Sbjct: 126 RACTPAS--ITDDPLRIFRAFRFECEGWRLDGEAEALLASRDWSDAFASIPVERFSQEML 183 Query: 211 KLLEAKNP 218 K L P Sbjct: 184 KALAKPAP 191 >gi|22327016|ref|NP_197758.2| polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] gi|332005816|gb|AED93199.1| Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] Length = 527 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 102/236 (43%), Gaps = 22/236 (9%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTSI 75 L +KG D +VGG VRD ++ + +D DI T+ V+R F + R+ + I Sbjct: 90 LKSKGHDVY-LVGGCVRDLILKRTPKDFDILTSAELREVVRTFPRCEIVGRRFPICHVHI 148 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR------RDFTINALYA 129 I++ F + S T K D D +R RDFTIN L Sbjct: 149 GDDLIEV----SSFSTSAQNSSRNTRTE-CKESSGSDGDEDCIRLNNCLQRDFTINGLMF 203 Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D KV+ DY+GG+ D+R ++ + A +D RILR R A G + S Sbjct: 204 DPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFHQDCARILRAIRIAARLGFRM--SKETA 261 Query: 189 ASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 IK L + L RI E+N +L + ++ ++ GI EI L +Q L Sbjct: 262 HFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFGIL-EILLPIQAAYL 316 >gi|1139585|gb|AAB03077.1| tRNA nucleotidyltransferase [Lupinus albus] Length = 560 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 29/229 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVM--RIFSKTRYKVIPTSISYGTIKII----- 83 + GG VRD L+ DIDIA D++M K R ++ + +I Sbjct: 95 VAGGWVRDKLLGKECYDIDIAL----DKMMGTEFVDKVREYLLSIGEEAQGVCVIESNPD 150 Query: 84 -------CRKKYFDI----TTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD- 130 R + FD+ LRS+ TD R + + D+ RRD TIN+L+ + Sbjct: 151 QSKHLETARMRLFDMWIDFVNLRSEEYTDNSRIPSMQRFGTPEEDAYRRDLTINSLFYNI 210 Query: 131 QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GL 187 V D+ G++DL++ I L+D LR++R RF A + E +D D Sbjct: 211 NTDSVEDFTKRGISDLKSGKIVTPLPPKATFLDDPLRVVRAIRFGARF-EFTLDEDLKQA 269 Query: 188 VASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 A + K L +S ERI +EI+ ++ P+ A+ ++ + IF +F Sbjct: 270 AACDEVKDALAAKISRERIGTEIDLMISGNQPVKAMTYICDLTIFWIVF 318 >gi|145489038|ref|XP_001430522.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124397620|emb|CAK63124.1| unnamed protein product [Paramecium tetraurelia] Length = 507 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 18/223 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS-YGTIKI------- 82 + GG VRD LM DIDI + + K ++ +S +G K+ Sbjct: 53 VAGGWVRDKLMGNESHDIDITIDNMSGEQFVLKMKDYFESKNIKVSGFGVTKLNPEQSKH 112 Query: 83 ---ICRK---KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 C K + D LR + T + + D+ RRD TIN+++ + + I Sbjct: 113 LETACIKILDQSIDFVNLRGETYTQNSRTPQIVVGTPEQDAFRRDLTINSMFYNLNTQEI 172 Query: 137 DYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK-A 193 + + GL DL N I+ D + +D LRILR FRF + + ++ V ++ Sbjct: 173 EDLTKMGLQDLENGIIRTPLDPYITFKDDPLRILRTFRFATRFNFQIVEEIIKVIELQDI 232 Query: 194 KKGLK-ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 K+ L+ +S ERI E++ +L+++ L + + + G++ IF Sbjct: 233 KEALQNKVSRERISIEMDWMLKSEKCLQGLKNYHELGLWCIIF 275 >gi|254230318|ref|ZP_04923705.1| poly(A) polymerase [Vibrio sp. Ex25] gi|151937142|gb|EDN56013.1| poly(A) polymerase [Vibrio sp. Ex25] Length = 352 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR RF Sbjct: 45 DAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVRFA 104 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + +I+ D L + S R++ E KLL++ + L + +F+++ Sbjct: 105 VKL-DFDIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQL 163 Query: 235 F 235 F Sbjct: 164 F 164 >gi|42569106|ref|NP_179349.2| polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] gi|330251561|gb|AEC06655.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] Length = 757 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 25/187 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--KVIPT 73 +N+L LL + + +VGG VRD ++N +D D+ TT ++ R+F + + K P Sbjct: 79 MNVLRLLRRQGFDAYLVGGCVRDLILNRVPKDYDVITTADLKQIRRLFHRAQVIGKRFPI 138 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVF---------------------TRD 112 + II + + SDL + V + Sbjct: 139 CHVWMGGSIIEVSSFDTVAHSDSDLEKSKEKSGVSLDTKANKNNSLFKMYSGWDIKDCKR 198 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 W+ +SL+RDFTIN+L+ + + DY G+ DL + ++ + AH ED RILR Sbjct: 199 WR-NSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTLVPAHLSFKEDCARILRGL 257 Query: 172 RFFAHYG 178 R A G Sbjct: 258 RIAARLG 264 >gi|164659020|ref|XP_001730635.1| hypothetical protein MGL_2431 [Malassezia globosa CBS 7966] gi|159104531|gb|EDP43421.1| hypothetical protein MGL_2431 [Malassezia globosa CBS 7966] Length = 592 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 50/255 (19%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV---------------IPTSI 75 I GG VRD L+ L D+D++ + L +F K + +P Sbjct: 42 IAGGWVRDKLLGLPSHDLDVSLSSLTGHQFALFLKAYLESDRFSQTKLAHEIAMHLPHRG 101 Query: 76 SYGTIKIICRKKY----------------FDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 GTI I D LR ++ V+ D++R Sbjct: 102 PMGTIGKIAANPEQSKNLETATTNVLGFDLDFVNLRKEVYEGTHRIPVMSFGTPLDDAMR 161 Query: 120 RDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RD T+NAL+ + + D+ GL+DL + ++ D +D LRILR RF + + Sbjct: 162 RDITVNALFYNVHTASIEDWTEHGLHDLHHGIVRTPMDPASTFNDDPLRILRCVRFSSRF 221 Query: 178 GEK----------NIDSDG-------LVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 G + SDG A + L +S ER E++K+L ++P Sbjct: 222 GYEIHSDIRSCLCETASDGGSKAKNPSTAELLRSALLNKVSRERFGIEVDKMLSGRDPFR 281 Query: 221 AIVHMYNGGIFKEIF 235 A+ + G++K +F Sbjct: 282 ALQLLSELGLYKVVF 296 >gi|228982659|ref|ZP_04142918.1| Polynucleotide adenylyltransferase/metal-dependent phosphohydrolase [Bacillus thuringiensis Bt407] gi|228776842|gb|EEM25150.1| Polynucleotide adenylyltransferase/metal-dependent phosphohydrolase [Bacillus thuringiensis Bt407] Length = 449 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 26/223 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ VGG VRD MN +DID+ I P+ + I S+ Y V +G +KI Sbjct: 23 RTFYVGGYVRDMFMNKESKDIDVEIYGITPETLRTILSQFGY-VDEFGAFFGILKIYGVD 81 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSL----RRDFTINALYADQ-QGKVIDYVGG 141 D + R ++ TD + D D+L RRDF +NA+ D +VID+ G Sbjct: 82 --IDFSMPRKEVKTDDGHTGFDVVVDPFLDTLTASKRRDFRMNAIMVDVLTEEVIDHFNG 139 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNIDSDGLVASIKAKKGL 197 ++D++ I+ I + H +ED LR R +F + + E+ ID KG Sbjct: 140 VSDIQLGIIRHIDE--HTFIEDELRAFRACQFASRFNFTIAEETID---------LCKGF 188 Query: 198 KI-LSSERIWSE-INKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + L ERI+ E + L++++ P +M I K++F ++ Sbjct: 189 RFSLPRERIFEEFLKALMKSEKPSIFFSYMREMLIVKKLFPEL 231 >gi|68011085|ref|XP_670997.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56486772|emb|CAH99245.1| conserved hypothetical protein [Plasmodium berghei] Length = 271 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKK-- 87 +VGG VRD +N+S DIDI + + K K + ++G IKI C + Sbjct: 92 VVGGWVRDKFLNISNDDIDITVDNMKGSDFCNYIKEYIKDKENKNFNFGIIKINCDQSKH 151 Query: 88 -----------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 DI LR++ T+ + + D+LRRDFTIN+L+ + + KV Sbjct: 152 LETSSFNLFNFQVDIVNLRNEKYTEESRIPEISIGTVEEDALRRDFTINSLFYNLKNKKV 211 Query: 136 IDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 DY G+ LRN+ I + L+D LRI+R R ++ Sbjct: 212 EDYTKNGIYHLRNKIISTPLNPLTTFLDDPLRIIRCIRVCGYF 254 >gi|50549773|ref|XP_502358.1| YALI0D03267p [Yarrowia lipolytica] gi|49648226|emb|CAG80546.1| YALI0D03267p [Yarrowia lipolytica] Length = 495 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 25/238 (10%) Query: 23 NKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILP-----DRVMRIFSKTRYKVIPTSI 75 N G D + GG VRD L+ + DIDIA L D++ S Sbjct: 28 NGGSDPLTLRFTGGWVRDKLLGQNSNDIDIAINSLTGAEFVDQLHAWISANPGSYPDELR 87 Query: 76 SYGTIKIICRK-KYFDITT------------LRSDLITDGRYAKVVFTRDWKADSLRRDF 122 S TIK+ K K+ + T LRS+ +D VV + D+ RRD Sbjct: 88 SKHTIKLNPDKSKHLETATTNLFGLDVDFVNLRSEEYSDESRVPVVQFGTAEQDAYRRDA 147 Query: 123 TINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 T+NAL+ + Q+ KV D G GL DL ++ +D LR+LR RF A + + Sbjct: 148 TLNALFYNLQEKKVEDLTGRGLADLEEGILRTPLAPKQTFKDDPLRVLRLIRFAARFNFQ 207 Query: 181 NIDS--DGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +V+ K L+ +S ER+ E++K+ P + + G+ EIF Sbjct: 208 LAPEAIEAIVSGEDIKHALETKISRERVGIELDKMFSGPCPEYGLRLIAKLGLEHEIF 265 >gi|85000969|ref|XP_955203.1| tRNA nucleotidyltransferase [Theileria annulata strain Ankara] gi|65303349|emb|CAI75727.1| tRNA nucleotidyltransferase, putative [Theileria annulata] Length = 615 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 32/239 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L++ +DIDIA T I + F+K +Y S + G +K + Sbjct: 171 VVGGWVRDKLLDKDNKDIDIAIPKMTGIKFCEYLNNFTKDKYGF---SRTVGVVKRCPEQ 227 Query: 87 -KYFDITTLR--------SDLITDGRYAKVVFTRDWK-----ADSLRRDFTINALYADQQ 132 K+ + T+ +L T+ Y+ D K D++RRDFT+N+L+ + Sbjct: 228 SKHLETATMNLLGFDVDFVNLRTED-YSSNTRIPDMKIGTPVEDAMRRDFTVNSLFYNIS 286 Query: 133 GKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 I D+ G GL DL+N I+ + ++D LR++R RF + + N D + Sbjct: 287 KNFIEDFTGTGLEDLKNGIIRTCSSPYEIFMDDPLRLIRAVRFSSRF---NFKLDEKLKD 343 Query: 191 IKAKKGLKILSSE----RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++ LK L+ + RI E+ +L N A MY I + L+V D+ Sbjct: 344 SINEQVLKALAQKVTRPRISQELENILSKSNVSEAFKLMYQFKIL-HVLLNVPPYDYDE 401 >gi|126656204|ref|ZP_01727588.1| polyA polymerase [Cyanothece sp. CCY0110] gi|126622484|gb|EAZ93190.1| polyA polymerase [Cyanothece sp. CCY0110] Length = 419 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 23/190 (12%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKV--IPTSISYGTIKIIC 84 + +VGG VRD+L+N D+ +LPD + I K +Y + +++ Sbjct: 20 AYLVGGMVRDALLNYQRDYFDL-DFVLPDFAIEIAKKIANQYNAGFVVLDAERNIARVVF 78 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLN 143 ++ D D I + D RRDFTINA+ Y QQ K ID + GL Sbjct: 79 KQGTVDFAQQEGDSI--------------EKDLRRRDFTINAIAYNFQQQKFIDPLNGLQ 124 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DL+ +TIK I + + +D LR+LR +R A + I+ + + +++E Sbjct: 125 DLQTKTIKMI--SVKNLEDDPLRLLRAYRQAAQLKFQ-IEPKTRETIAQLSFLIPQVAAE 181 Query: 204 RIWSEINKLL 213 R+ +E+N LL Sbjct: 182 RVQTELNYLL 191 >gi|225851035|ref|YP_002731269.1| poly A polymerase [Persephonella marina EX-H1] gi|225645264|gb|ACO03450.1| poly A polymerase [Persephonella marina EX-H1] Length = 323 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 27/241 (11%) Query: 25 GEDKSC-IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSK----------TRYKV 70 +D C IVGG +RD L+N + DID T P +++ F K + K Sbjct: 52 SKDTVCLIVGGWIRDRLLNRPLSKKIDIDFLVTTDPFEIVKRFKKILGKGDIFRFEKEKD 111 Query: 71 IPTSISY-GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-- 127 + T I Y G + YFDI+ + + D + + + D + RDFTINA+ Sbjct: 112 VATIIFYEGDHRYRFDFSYFDISDIMENPDLDFYDKEREIIKRIEQDLMTRDFTINAMAV 171 Query: 128 -------YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 Q + D GGL DL+ ++ + ++ I +D +RILR +R A + Sbjct: 172 VFDDTIGLGASQTVLFDPSGGLEDLQAGIVRPV--SYENIEKDPVRILRGYR-IAQEIDF 228 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 IDSD K +K SER+ EI K+ + + + + + G+ ++I +++ Sbjct: 229 EIDSDFERWVKKNASLVKNAPSERLRDEILKIFDKERSADTVDRLIKAGLLQQIIPEIES 288 Query: 241 I 241 + Sbjct: 289 M 289 >gi|121606357|ref|YP_983686.1| metal dependent phosphohydrolase [Polaromonas naphthalenivorans CJ2] gi|166233868|sp|A1VSY7|CCA_POLNA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|120595326|gb|ABM38765.1| metal dependent phosphohydrolase [Polaromonas naphthalenivorans CJ2] Length = 424 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 45/285 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKY 88 +VGGAVRD L+ L V D D + P+ + T +P + + R++Y Sbjct: 5 MVGGAVRDKLLGLPVTDHDWVVVGATPEAL------TAQGFLPVGKDFPVFLHPQTREEY 58 Query: 89 FDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQG------------ 133 T R+ G V+ + D RRD TIN++ A Sbjct: 59 ALARTERNS--ARGYRGFEVYAAPEVTLEQDLARRDLTINSIAAPAHPDSAKGLFEPDFD 116 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA--SI 191 ++D GG DL+ + ++ + DA ED +RILR RF A + + +I + L + Sbjct: 117 ALVDPYGGQRDLQAKVLRHVTDA---FREDPVRILRLARFAARFADFSIAPETLAMMWEM 173 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L ER+W E+ + L P + G + + +V+ +L V + Sbjct: 174 VTDGEVDGLVPERVWQELARGLMEDKPSRMFDALRACGALQHLLPEVE-----RLWGVAQ 228 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + Q + +ID+ + ++ +L MA + P +R+ + Sbjct: 229 SAQ-YHPEIDTGIHLMM---------VLDMAAQLGAPLPVRFACL 263 >gi|228904710|ref|ZP_04068764.1| TRNA nucleotidyltransferase [Bacillus thuringiensis IBL 4222] gi|228854724|gb|EEM99328.1| TRNA nucleotidyltransferase [Bacillus thuringiensis IBL 4222] Length = 507 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 101/257 (39%), Gaps = 49/257 (19%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 +L I+ L K +VGGAVRD L+++ +D D T I + + PT Sbjct: 2 ELTKIVETLKTCNAKVYLVGGAVRDLLLDIVPKDKDYCVT-------GISQEGFESLFPT 54 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA------------------ 115 ++ G D R D+ DG +V R + Sbjct: 55 AMLQGK----------DFPVYRMDI--DGELCEVALARKERKVSEGHNGFVIYASPDITI 102 Query: 116 --DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D RRD TIN++ D + K+ID G DLR TI+ +A ED LR+ R R Sbjct: 103 EDDLARRDITINSMAIDLETNKLIDPFYGELDLRTETIRATTEA---FCEDPLRVYRAAR 159 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A YG I+ + K L L ER+ E K A+ P + + + Sbjct: 160 FAAEYG-FFIEYKTSTMMNQLKSELLSLPIERVLEETKKAFMARTPSRFFHALKSANV-- 216 Query: 233 EIFLDVQEISLDQLSQV 249 LDV +D LS++ Sbjct: 217 ---LDVHFPEIDCLSEL 230 >gi|75758964|ref|ZP_00739074.1| tRNA nucleotidyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493565|gb|EAO56671.1| tRNA nucleotidyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 510 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 101/257 (39%), Gaps = 49/257 (19%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 +L I+ L K +VGGAVRD L+++ +D D T I + + PT Sbjct: 5 ELTKIVETLKTCNAKVYLVGGAVRDLLLDIVPKDKDYCVT-------GISQEGFESLFPT 57 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA------------------ 115 ++ G D R D+ DG +V R + Sbjct: 58 AMLQGK----------DFPVYRMDI--DGELCEVALARKERKVSEGHNGFVIYASPDITI 105 Query: 116 --DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D RRD TIN++ D + K+ID G DLR TI+ +A ED LR+ R R Sbjct: 106 EDDLARRDITINSMAIDLETNKLIDPFYGELDLRTETIRATTEA---FCEDPLRVYRAAR 162 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A YG I+ + K L L ER+ E K A+ P + + + Sbjct: 163 FAAEYG-FFIEYKTSTMMNQLKSELLSLPIERVLEETKKAFMARTPSRFFHALKSANV-- 219 Query: 233 EIFLDVQEISLDQLSQV 249 LDV +D LS++ Sbjct: 220 ---LDVHFPEIDCLSEL 233 >gi|300115235|ref|YP_003761810.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nitrosococcus watsonii C-113] gi|299541172|gb|ADJ29489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nitrosococcus watsonii C-113] Length = 403 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 17/218 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ V++ D + P ++ + K P + T + Sbjct: 2 ETYLVGGAVRDKLLGRPVKERDYVVVGTTPAHLLAQGYRPVGKDFPVFLHPQTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y +V T D + D RRD TINA+ G ++D GG Sbjct: 57 ---EYALARTERKTGPGYKGFEVHATPDVTLEEDLQRRDLTINAIAEAADGSLLDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A + K ++ L+ ++ L Sbjct: 114 QDLARGILRHVSPA---FAEDPVRILRAARFAARFDFKVAPETLALMEAMVTAGEADHLV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ER+W E+ + L P + G IF +++ Sbjct: 171 PERVWKELERALGESYPRRFFEILRACGALARIFPEIE 208 >gi|332978790|gb|EGK15479.1| multifunctional CCA protein [Psychrobacter sp. 1501(2011)] Length = 420 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 33/210 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGGAVRD L++ + D D + P+++++ + P + T +++Y Sbjct: 14 IVGGAVRDKLLDRAYTDKDFVVVGATPEQMVQAGFIQVGEDFPVFLHPKT-----KEEYA 68 Query: 90 DITTLRSDLITDGR-------YAKVVFTRDWKADSLRRDFTINALYADQQG--------- 133 T R G+ YA T D D LRRD TINA+ + +G Sbjct: 69 LARTERKS----GKGYKGFEVYASPEVTID--EDLLRRDLTINAMAIEVKGLMDDTPISG 122 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF-RFFAHYGEKNI----DSDGLV 188 VID G D++++ ++ + +A LRI RF+ RF+ +N ++ L+ Sbjct: 123 AVIDPYNGQQDIKDKVLRHVSEAFSEDPLRVLRIARFYGRFYDPSAAQNFIIAPETVNLI 182 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNP 218 +I LK L++ER+W E ++ L ++P Sbjct: 183 HTINDSGELKHLTAERVWQETSRALLQRSP 212 >gi|224369329|ref|YP_002603493.1| polyA polymerase family protein (tRNA nucleotidyltransferase) (tRNA CCA-pyrophosphorylase) [Desulfobacterium autotrophicum HRM2] gi|223692046|gb|ACN15329.1| polyA polymerase family protein (tRNA nucleotidyltransferase) (tRNA CCA-pyrophosphorylase) [Desulfobacterium autotrophicum HRM2] Length = 890 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 10/211 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-F 89 +VGG VRD L+ V D+DI + F+ + +GT ++ + Sbjct: 494 VVGGFVRDLLLYRKVDDMDIVVEGDGISFAKSFALMCKGRCNSHKKFGTAVVVLPDGFKV 553 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN--ALYADQQ--GKVIDYVGGLNDL 145 D+ + R + V K D RRDFTIN A+ +Q+ G +ID+ G DL Sbjct: 554 DVASARREYYKFPAALPTVEMSSIKLDMFRRDFTINTMAIQLNQEKFGTLIDFFGAQRDL 613 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--SDGLVASIKAKKGLKILSSE 203 +++TI+ I + +ED R+ R +F A+ + I + L+ + K LS Sbjct: 614 KDKTIRTIHNLS--FVEDPTRVFRAIKF-ANRFDFTIGKLTSNLIQNAVRVDFFKNLSGL 670 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 R++SE+ ++LE +P+ AI + G+ + I Sbjct: 671 RVFSELRQILEEDDPIPAIKTLETYGLERVI 701 >gi|242279424|ref|YP_002991553.1| polynucleotide adenylyltransferase region [Desulfovibrio salexigens DSM 2638] gi|242122318|gb|ACS80014.1| Polynucleotide adenylyltransferase region [Desulfovibrio salexigens DSM 2638] Length = 891 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 31/248 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY-----GTIKI 82 ++ +VGG VRD L+ S D+D+ + D + F+K K + Y + I Sbjct: 489 EAYVVGGFVRDVLLTKSNLDLDL--VVESDGIA--FAKKLAKRMDGRAKYHRKFKTAVVI 544 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDY 138 + + D+ T R + V K D RRDFTINAL GK++D+ Sbjct: 545 LPDGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTINALAVHINPSSFGKLVDF 604 Query: 139 VGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEK------NIDSDGLVAS 190 G DL+++TI+ + H + +ED RI+R RF + K N+ + L + Sbjct: 605 FGSQRDLKDKTIRVL----HALSFVEDPTRIMRAIRFEQRFDFKIGGQTLNLIKNALKLN 660 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + K LS R+ E+ +L N L +I M G+ + I + E++ + + Sbjct: 661 LINK-----LSGYRLTHEMRIILNEANVLRSIERMNELGVLEAIH-PLMELNSARSQVIA 714 Query: 251 EAEQVFEW 258 E E++ W Sbjct: 715 ELERLMSW 722 >gi|307104940|gb|EFN53191.1| hypothetical protein CHLNCDRAFT_137010 [Chlorella variabilis] Length = 313 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 16/163 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTIL-----PDRVMRIF----SKTRYKVI-----PTSISY 77 GG VRD LM + QDIDIA L DR+ +TR+ + S Sbjct: 119 AGGWVRDKLMGRTSQDIDIALDNLLGREFADRINEHLKAHGEETRHVAVIMSNPEQSKHL 178 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVI 136 T ++ R + D+ LRS+ + + D+ RRDFTIN+L+ + G + Sbjct: 179 ETARMKVRGLWIDLVNLRSEEYAHHSRIPTMAFGTPEEDAHRRDFTINSLFYNINTGLIE 238 Query: 137 DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D+ GL DLR I+ ++D LR+LR RF + +G Sbjct: 239 DFTSQGLPDLRAGIIRTPMSPKETFMDDPLRVLRAVRFASRFG 281 >gi|17230628|ref|NP_487176.1| polyA polymerase [Nostoc sp. PCC 7120] gi|17132231|dbj|BAB74835.1| polyA polymerase [Nostoc sp. PCC 7120] Length = 422 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 122/274 (44%), Gaps = 54/274 (19%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPD--RVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+++ S + +D+ I D +V R + RY+ + Sbjct: 27 MVGGAVRDAMLGRSREYLDLDFVIPSDAVKVARTIAH-RYQA----------------GF 69 Query: 89 FDITTLRSDLITDGRYAKVVF---TRDW---KADSL-----RRDFTINAL-YADQQGKVI 136 + +R R A+VVF T D+ + DSL RRDFT+NA+ Y ++I Sbjct: 70 VLLDPVR-------RIARVVFPQATADFAQQEGDSLETDLHRRDFTVNAIAYNPHTQEII 122 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D + G DL+ ++ I A+ + +D LR+LR +R A G I+ A Sbjct: 123 DPLNGYADLQAGVLRMIAKANLK--DDPLRLLRAYRQAAQLG-FTIEPTTQAAIRDLASH 179 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L +++ER+ EI LL + + N G+ K+ F + S +L+ V E + Sbjct: 180 LCQVAAERVRVEIGYLLASPQGHTWMAIAENDGLLKQFFPNTTPESFRKLAVVDEVADLL 239 Query: 257 --EW-----KIDSLLRFIVLISWQDKKSILSMAK 283 +W ++ +R V +W LS+AK Sbjct: 240 AKQWPQLGVELQGYVRETVKTTW------LSIAK 267 >gi|330818592|ref|YP_004362297.1| Multifunctional CCA protein [Burkholderia gladioli BSR3] gi|327370985|gb|AEA62341.1| Multifunctional CCA protein [Burkholderia gladioli BSR3] Length = 417 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ + VQD D + P+++ + K P + + + + Sbjct: 6 VGGAIRDELLGVPVQDRDYVVVGATPEQLAAQGYRPVGKDFPV--------FLHPRTHEE 57 Query: 91 ITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y + F D + D RRD +INA+ + G V+D Sbjct: 58 YALARTERKTAAGYHGFQFYFAPDVTLEEDLARRDLSINAMARELSPDGSLVGPVVDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL + + +G A +ED +RILR RF A + + + L+ + + Sbjct: 118 GRADLAAKRFRHVGPA---FVEDPVRILRIARFAARFADFTVAPGTLALMREMVTAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+++ L+EAK Sbjct: 175 ALVPERVWQELSRGLMEAK 193 >gi|222056388|ref|YP_002538750.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter sp. FRC-32] gi|221565677|gb|ACM21649.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter sp. FRC-32] Length = 403 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 81/191 (42%), Gaps = 25/191 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-- 88 +VGG+VRD L+ +DID+ LPD +R S Y + T + I C + Sbjct: 22 VVGGSVRDFLLGKESEDIDLVAA-LPDETLR--SCGFYPI--TGKTTVPIWFQCHPELGK 76 Query: 89 FDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 +I LR + LI D R RRDFTINA+ G + D + G LR Sbjct: 77 IEIIQLREESLIEDLR---------------RRDFTINAIAMHLSGMLYDPLDGSRHLRE 121 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ D + +D LRI R FRF A + S L+ L + ER Sbjct: 122 GLLQACTD--NTFADDPLRIFRAFRFEADGWQMTTGSKALILGRDWTARLGHIPVERFSR 179 Query: 208 EINKLLEAKNP 218 E+ K L K P Sbjct: 180 EMLKALGGKEP 190 >gi|302790141|ref|XP_002976838.1| hypothetical protein SELMODRAFT_151539 [Selaginella moellendorffii] gi|300155316|gb|EFJ21948.1| hypothetical protein SELMODRAFT_151539 [Selaginella moellendorffii] Length = 562 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 27/229 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT----SISYG-------- 78 + GG VRD L+ DIDIA L + + R F + + + + + S G Sbjct: 81 VAGGWVRDKLLGKDCYDIDIA---LDNMLGRDFCEKVNEYLKSIGEETKSVGVILSNPDQ 137 Query: 79 -----TIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 T ++ + D LR++ D R + K D+ RRD TIN+L+ + Sbjct: 138 SKHLETARMKIEDVWVDFVNLRAETYADDSRIPSTMEFGTPKQDAERRDLTINSLFYNIN 197 Query: 132 QGKVIDYVGGLNDLRNRTIKFIG---DAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGL 187 G V D+ LR+ + I + H L+D LR+LR RF + +G E D Sbjct: 198 TGHVEDHTDRGKCLRDLKVGVIATPLEPHVTFLDDPLRVLRSVRFASRFGFELEDDLRAA 257 Query: 188 VASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ + + L + +S ERI E+ +L +P A+ + + +F+ +F Sbjct: 258 ASTGEVRDALERKISRERIGHEVELMLLGNDPTQAMELLLDLKLFRSVF 306 >gi|145641758|ref|ZP_01797334.1| hypothetical protein CGSHiR3021_02364 [Haemophilus influenzae R3021] gi|145273572|gb|EDK13442.1| hypothetical protein CGSHiR3021_02364 [Haemophilus influenzae 22.4-21] Length = 319 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDG 186 + G++ID GG DL NR ++ I A ED LR+LR RF A Y ++ Sbjct: 5 EDGEIIDPYGGKQDLENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLA 61 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 L+ + L+ L++ERIW E K L KNP ++ G +F ++ Sbjct: 62 LMTELALSGELQHLTTERIWLETEKALNEKNPEIYFETLHKTGALSVLFSEI 113 >gi|225158886|ref|ZP_03725200.1| polynucleotide adenylyltransferase region [Opitutaceae bacterium TAV2] gi|224802504|gb|EEG20762.1| polynucleotide adenylyltransferase region [Opitutaceae bacterium TAV2] Length = 499 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 32/213 (15%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP----DRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD+L+ L +D D+ + R + F T S+G IK+ Sbjct: 39 LVGGCVRDALLGLVAKDFDVEVCGVDFATLHRALSPFGATDV----VGRSFGVIKLRLDG 94 Query: 87 KYFDITTLRSDLITD-GRYAKVVFTRDWKAD---SLRRDFTINAL----YADQ------- 131 + +D + R + T G V D + RRDFTINA+ +AD Sbjct: 95 EEYDFSLPRRESKTGAGHRGFAVEPEPGLTDAEAAARRDFTINAIAWDPFADAGGGGGRR 154 Query: 132 --QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 G +ID GG+ DLR ++ A +ED LR+LR F+F + ++ L Sbjct: 155 EGGGGLIDPHGGVRDLRAGVLRHTSAA---FVEDPLRVLRAFQFAGRFDLTLAPETAALC 211 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 +I L ER+W E K E K+P A Sbjct: 212 RAISTT--FTELPKERVWGEWQKWAE-KSPKPA 241 >gi|194334118|ref|YP_002015978.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Prosthecochloris aestuarii DSM 271] gi|194311936|gb|ACF46331.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Prosthecochloris aestuarii DSM 271] Length = 489 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 16/252 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCI----VGGAVRDSLMNLSVQDIDIATTILPDRVM 60 ++ + HDS L +L + D+ I VGG +RD L+ QDIDI P Sbjct: 8 LKEQRLHDS-LPEVLYRIGDIADQQNIECYLVGGYIRDVLLERPSQDIDIMIIGDPIAFA 66 Query: 61 RIFSKT---RYKVIPTSISYGTIKI---ICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114 R K R V+ +++ + +I R + + + Sbjct: 67 REVQKQLKGRNFVVFERFRTARLELDDAVEGPVLLEIVGARKESYNPDSRKPITEIGSLE 126 Query: 115 ADSLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 D RRDFT+NAL A + +++D GG+ L + +K + +D LR++R Sbjct: 127 DDLSRRDFTVNALALELNALNRNRIVDLYGGIEALHSGILKTPLEPEKTFSDDPLRMMRA 186 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + E ++ + L A + I+S ER+ E K++++ P + ++ G+ Sbjct: 187 ARFSSQL-EFSLTDETLDAIKAMHTRISIVSRERVSHEFLKIMQSPKPSIGLKILFETGL 245 Query: 231 FKEIFLDVQEIS 242 KEIF ++ ++ Sbjct: 246 LKEIFPELTAMA 257 >gi|302797611|ref|XP_002980566.1| hypothetical protein SELMODRAFT_113085 [Selaginella moellendorffii] gi|300151572|gb|EFJ18217.1| hypothetical protein SELMODRAFT_113085 [Selaginella moellendorffii] Length = 587 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 27/229 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT----------------- 73 + GG VRD L+ DIDIA L + + R F + + + + Sbjct: 84 VAGGWVRDKLLGKDCYDIDIA---LDNMLGRDFCEKVNEYLKSIGEETKNVGVILSNPDQ 140 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 S T ++ + D LR++ D R + K D+ RRD TIN+L+ + Sbjct: 141 SKHLETARMKIEDVWVDFVNLRAETYADDSRIPSTMEFGTPKQDAERRDLTINSLFYNIN 200 Query: 132 QGKVIDYVGGLNDLRNRTIKFIG---DAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGL 187 G V D+ LR+ + I + H L+D LR+LR RF + +G E D Sbjct: 201 TGHVEDHTDRGKCLRDLKVGVIATPLEPHVTFLDDPLRVLRSVRFASRFGFELEDDLRAA 260 Query: 188 VASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ + + L + +S ERI E+ +L +P A+ + + +F+ +F Sbjct: 261 ASTGEVRDALERKISRERIGHEVELMLLGNDPTQAMELLLDLKLFRSVF 309 >gi|293977824|ref|YP_003543254.1| hypothetical protein DMIN_00950 [Candidatus Sulcia muelleri DMIN] gi|292667755|gb|ADE35390.1| uncharacterized domain HDIG [Candidatus Sulcia muelleri DMIN] Length = 442 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 98/214 (45%), Gaps = 33/214 (15%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +NK KS +VGG VRD L+ +V + + I T + D + K KV I Sbjct: 19 VNKMNKKSYVVGGYVRDFLIGKNVCKKVYIVT--VGDCI-----KLAKKVCEKLDHKHKI 71 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD----QQGKVI 136 I KYF ++ + + +++ +++K + DFTIN L GK+I Sbjct: 72 NIF---KYFGTAIIKYNNLNIEFFSERCSLKEFKK---KIDFTINTLAISLNNLNYGKLI 125 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D GGL D+ IK D++ D LR++R RF Y E N D L I Sbjct: 126 DPFGGLFDIMKNKIK--SDSY-----DSLRMIRAIRF---YNEFNFQIDNLSIQI----- 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 +KILS ERI E NK+L + P I + Y G+ Sbjct: 171 MKILSIERILYEFNKILLSNKPSTGIFYFYKIGL 204 >gi|297832374|ref|XP_002884069.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329909|gb|EFH60328.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 761 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 39/196 (19%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKV 70 +N+L LL + + +VGG VRD +++ +D D+ TT ++ R+F + R+ + Sbjct: 79 MNVLRLLRRQGFDAYLVGGCVRDLILHRVPKDYDVITTANLKQIRRLFHRAQVIGKRFPI 138 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFT--- 110 + I++ FD T SD L T+ +FT Sbjct: 139 CHVWMGGSIIEV----SSFD-TVAHSDSEHEDDLEKSKEKSGVSLDTEANKNNSLFTMYS 193 Query: 111 -------RDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162 W+ +SL+RDFTIN+L+ + + K+ DY G+ DL + ++ + AH E Sbjct: 194 GWDVKDCNRWR-NSLQRDFTINSLFYNPFELKIYDYANGMEDLTDLKLRTLVPAHLSFKE 252 Query: 163 DYLRILRFFRFFAHYG 178 D RILR R A G Sbjct: 253 DCARILRGLRIAARLG 268 >gi|56707282|ref|YP_169178.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110669752|ref|YP_666309.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. tularensis FSC198] gi|224456347|ref|ZP_03664820.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. tularensis MA00-2987] gi|254369964|ref|ZP_04985972.1| tRNA adenylyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254874120|ref|ZP_05246830.1| CCA-adding enzyme [Francisella tularensis subsp. tularensis MA00-2987] gi|73619773|sp|Q5NIG4|CCA_FRATT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|122971102|sp|Q14JW7|CCA_FRAT1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|56603774|emb|CAG44741.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320085|emb|CAL08124.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568210|gb|EDN33864.1| tRNA adenylyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254840119|gb|EET18555.1| CCA-adding enzyme [Francisella tularensis subsp. tularensis MA00-2987] gi|282158401|gb|ADA77792.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. tularensis NE061598] Length = 360 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 91/203 (44%), Gaps = 34/203 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M ++ G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEM--------------LANGFIKIAANFPVFI 50 Query: 90 ------DITTLRSDLITDGRYA--KVVFTR--DWKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ T Y +V F++ + D RRD TIN++ DQ KVID Sbjct: 51 HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIK--AKKG 196 G DL+NR ++ A +ED LR++R RF A N + ++A IK K G Sbjct: 111 NGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTG 167 Query: 197 -LKILSSERIWSEINKLLEAKNP 218 L L+ ER+ E K L NP Sbjct: 168 ELNHLTRERLHIEFVKALN--NP 188 >gi|159029061|emb|CAO90047.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 409 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 17/189 (8%) Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + + +VGGAVRD+L+N ID+ ++P++ + I + + ++ I R Sbjct: 24 ENAYLVGGAVRDALLNRQKDYIDL-DFVVPEKAIEIAQTIAHHYKAGFVVLDAVRQIARV 82 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDL 145 + T + +G ++ D RRDFT+NAL Y Q ++ D +GGL DL Sbjct: 83 VFPQGTLDFAQ--QEGESLEI--------DLKRRDFTVNALAYNLQTQEIFDPLGGLKDL 132 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSER 204 ++++ I + + +D LR+LR +R A E + + S+ L+ +++ER Sbjct: 133 GCQSLRMI--SRENLQDDPLRLLRAYRQAAQLDFEIEPHTRATIRSLAPL--LRRVAAER 188 Query: 205 IWSEINKLL 213 + SE+N LL Sbjct: 189 VQSELNYLL 197 >gi|134301319|ref|YP_001121287.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049096|gb|ABO46167.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 360 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 91/203 (44%), Gaps = 34/203 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M ++ G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEM--------------LANGFIKIAANFPVFI 50 Query: 90 ------DITTLRSDLITDGRYA--KVVFTR--DWKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ T Y +V F++ + D RRD TIN++ DQ KVID Sbjct: 51 HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIK--AKKG 196 G DL+NR ++ A +ED LR++R RF A N + ++A IK K G Sbjct: 111 NGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTG 167 Query: 197 -LKILSSERIWSEINKLLEAKNP 218 L L+ ER+ E K L NP Sbjct: 168 ELNHLTRERLHIEFVKALN--NP 188 >gi|54113957|gb|AAV29612.1| NT02FT0849 [synthetic construct] Length = 360 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 91/203 (44%), Gaps = 34/203 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M ++ G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEM--------------LANGFIKIAANFPVFI 50 Query: 90 ------DITTLRSDLITDGRYA--KVVFTR--DWKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ T Y +V F++ + D RRD TIN++ DQ KVID Sbjct: 51 HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIK--AKKG 196 G DL+NR ++ A +ED LR++R RF A N + ++A IK K G Sbjct: 111 NGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTG 167 Query: 197 -LKILSSERIWSEINKLLEAKNP 218 L L+ ER+ E K L NP Sbjct: 168 ELNHLTRERLHIEFVKALN--NP 188 >gi|89256942|ref|YP_514304.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. holarctica LVS] gi|115315306|ref|YP_764029.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. holarctica OSU18] gi|156503132|ref|YP_001429197.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010006|ref|ZP_02274937.1| CCA-adding enzyme [Francisella tularensis subsp. holarctica FSC200] gi|254368207|ref|ZP_04984227.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica 257] gi|254369806|ref|ZP_04985816.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|290954002|ref|ZP_06558623.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. holarctica URFT1] gi|295312621|ref|ZP_06803373.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. holarctica URFT1] gi|89144773|emb|CAJ80108.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130205|gb|ABI83392.1| tRNA adenylyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134254017|gb|EBA53111.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253735|gb|ABU62241.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122765|gb|EDO66894.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 360 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 91/203 (44%), Gaps = 34/203 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M ++ G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEM--------------LANGFIKIAANFPVFI 50 Query: 90 ------DITTLRSDLITDGRYA--KVVFTR--DWKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ T Y +V F++ + D RRD TIN++ DQ KVID Sbjct: 51 HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIK--AKKG 196 G DL+NR ++ A +ED LR++R RF A N + ++A IK K G Sbjct: 111 NGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTG 167 Query: 197 -LKILSSERIWSEINKLLEAKNP 218 L L+ ER+ E K L NP Sbjct: 168 ELNHLTRERLHIEFVKALN--NP 188 >gi|320352799|ref|YP_004194138.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfobulbus propionicus DSM 2032] gi|320121301|gb|ADW16847.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfobulbus propionicus DSM 2032] Length = 508 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 40/235 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPTSISYG----TIKIICR 85 + GG VRD L QDID+A D RI++ K T ++ G +++ R Sbjct: 38 LAGGVVRDLLRGSVPQDIDLAV----DSGARIWAGKLAVLTGGTYVALGRDEDAARVVSR 93 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-----------ADQQGK 134 K+ D + R R + +RRD T+NA+ AD + Sbjct: 94 KRIVDFASFRQG------------ARTIAEELVRRDLTVNAMAIRLDPLLRLPEADGPSE 141 Query: 135 V--IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 V +D GG +DL I+ + D LR+LR FRF A G +++ G + I+ Sbjct: 142 VPLLDPTGGRDDLEQGLIRVA--SRESFTSDPLRLLRVFRFAATLG-FAVEA-GTLELIR 197 Query: 193 AKKGLKILSS-ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQ 245 ++ L LS+ ER+ E++ ++ N V M + G+ EI +++ I ++Q Sbjct: 198 RQRALLALSAPERVAHELDLIMATDNSHAVFVQMADIGLLWEILPELKAGIGMEQ 252 >gi|270667887|ref|ZP_06222476.1| poly(A) polymerase [Haemophilus influenzae HK1212] gi|270316774|gb|EFA28529.1| poly(A) polymerase [Haemophilus influenzae HK1212] Length = 312 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 27/159 (16%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + + Sbjct: 10 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQR---QCRLV 66 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 67 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 120 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIG 154 ++RRDFT+NALY + Q + DY G+ DL+ ++ IG Sbjct: 121 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIG 159 >gi|116073942|ref|ZP_01471204.1| Poly A polymerase family protein [Synechococcus sp. RS9916] gi|116069247|gb|EAU74999.1| Poly A polymerase family protein [Synechococcus sp. RS9916] Length = 420 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 24/209 (11%) Query: 29 SCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 S +VGGAVRD+L+ S D+D+ ++P + +TR + YG ++ + Sbjct: 42 SALVGGAVRDALLGRLSSTPDLDL---VVPADAL---GETRR----LAKRYGGACVVLDE 91 Query: 87 KYFDITTL--RSDLITDGRYAKVVFTRDWKADSLRRDFTIN--ALYADQQGKVIDYVGGL 142 + D+ L + I R T AD RRD+ IN AL +++D GGL Sbjct: 92 QR-DMARLVVKGWTIDLARQEGANLT----ADLQRRDYRINAIALRLAPTPELVDPCGGL 146 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL + + A +++D LR+LR R A K I +D K +K L + Sbjct: 147 QDLNAGLLTAV--AEQNLIDDPLRLLRGIRIAAELNFK-IAADTWPLLNKHRKALPKAAP 203 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 ERI +E+ KL++A A+ + G+ Sbjct: 204 ERIQAELTKLVQAPGADQAMEQLRCSGLL 232 >gi|219856687|ref|YP_002473809.1| hypothetical protein CKR_3344 [Clostridium kluyveri NBRC 12016] gi|219570411|dbj|BAH08395.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 467 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 28/226 (12%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---YKVIPTSISYG 78 +N+ E + +VGG +R+ LMN++ Q D A + + SK + YK P S Sbjct: 18 INEVEGELYLVGGYIRNKLMNIASQPKD-ADFVFNGDIHEFISKLQNKGYKFFPIKESVS 76 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL---YADQQGKV 135 + I K D++ ++ + I + D RDFTINAL ++D K+ Sbjct: 77 IYRCIKDKNKIDVSLMKGNSIEE--------------DLENRDFTINALALRFSDN--KI 120 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAK 194 ID G +++R +K + D + ED RILR RF G N++++ + K K Sbjct: 121 IDPFYGRKAIQSRILKNVTD--RSLEEDPCRILRGIRFCITLGMHFNLETENNIEKFKDK 178 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + L ER+++E ++E A + N GI K I ++E Sbjct: 179 --IMDLPKERVFNEFMLIIENDKYGRAFEILDNYGILKNIVPYIEE 222 >gi|114319196|ref|YP_740879.1| metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1] gi|122312785|sp|Q0ACP8|CCA_ALHEH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|114225590|gb|ABI55389.1| metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1] Length = 413 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 25/232 (10%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V++ D + P+ + + + + P + T + Sbjct: 5 LVGGAVRDQLLGREVRERDWVVVGARPEDLKQRGYRPVGQDFPVFLHPET--------HE 56 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y F + D RRD TINA+ G +ID G DL Sbjct: 57 EYALARTERKTGRGYHGFAFHASPEVTLEQDLARRDLTINAMARADDGTLIDPYDGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + A ED +RILR RF A + ++ L + A + L Sbjct: 117 EQRLLRHVSPA---FAEDPVRILRLARFAARFQPLGFRVAPETLALCRKMVADGEVDALV 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 ER+W E+++ L P+ + G + + LD+L + E E Sbjct: 174 PERVWQELSRALLEDTPVPFFRVLRECGALARVLPE-----LDRLFGIPEPE 220 >gi|153956374|ref|YP_001397139.1| tRNA nucleotidyltransferase-related protein [Clostridium kluyveri DSM 555] gi|146349232|gb|EDK35768.1| TRNA nucleotidyltransferase-related protein [Clostridium kluyveri DSM 555] Length = 464 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 28/226 (12%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---YKVIPTSISYG 78 +N+ E + +VGG +R+ LMN++ Q D A + + SK + YK P S Sbjct: 15 INEVEGELYLVGGYIRNKLMNIASQPKD-ADFVFNGDIHEFISKLQNKGYKFFPIKESVS 73 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL---YADQQGKV 135 + I K D++ ++ + I + D RDFTINAL ++D K+ Sbjct: 74 IYRCIKDKNKIDVSLMKGNSIEE--------------DLENRDFTINALALRFSDN--KI 117 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAK 194 ID G +++R +K + D + ED RILR RF G N++++ + K K Sbjct: 118 IDPFYGRKAIQSRILKNVTD--RSLEEDPCRILRGIRFCITLGMHFNLETENNIEKFKDK 175 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + L ER+++E ++E A + N GI K I ++E Sbjct: 176 --IMDLPKERVFNEFMLIIENDKYGRAFEILDNYGILKNIVPYIEE 219 >gi|270635207|ref|ZP_06222062.1| poly(A) polymerase [Haemophilus influenzae HK1212] gi|270317443|gb|EFA28942.1| poly(A) polymerase [Haemophilus influenzae HK1212] Length = 163 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 27/159 (16%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + + Sbjct: 10 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQR---QCRLV 66 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 67 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 120 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIG 154 ++RRDFT+NALY + Q + DY G+ DL+ ++ IG Sbjct: 121 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIG 159 >gi|118580470|ref|YP_901720.1| metal dependent phosphohydrolase [Pelobacter propionicus DSM 2379] gi|118503180|gb|ABK99662.1| metal dependent phosphohydrolase [Pelobacter propionicus DSM 2379] Length = 404 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 92/252 (36%), Gaps = 31/252 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD L+ +DID+ + D + R +++ + Sbjct: 22 LVGGCVRDHLLGRGCRDIDLVAALSGDELGRC----------------GFRLVAGRSTAP 65 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 I D + AD RRDFTIN+L D +G + D G D+ R + Sbjct: 66 IWFRHDDAFGTIELTPLTCPEALDADLRRRDFTINSLAMDLRGNLHDPFDGRGDIMGRFL 125 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 + R +D LRI R FRF + + L+ + + L + ER E+ Sbjct: 126 RPCSPDTFR--DDPLRIFRAFRFESDGWSMTGECQYLIGQHQWSEELSRIPMERFSREML 183 Query: 211 KLLEAKNPLNAIVHMY----NGGIFKEIFLDVQ--------EISLDQLSQVIEAEQ-VFE 257 K A P + M G E+F + D L+ I+ Q V E Sbjct: 184 KACSAARPERFFLAMLKFGVGAGYLPELFRMARIPAGPLRYHPEGDLLTHSIQVMQRVAE 243 Query: 258 WKIDSLLRFIVL 269 D L RF L Sbjct: 244 RSTDPLARFCAL 255 >gi|320334701|ref|YP_004171412.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Deinococcus maricopensis DSM 21211] gi|319755990|gb|ADV67747.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Deinococcus maricopensis DSM 21211] Length = 431 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 27/246 (10%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + +VGGA RD L + +D D A + ++T P G ++ Sbjct: 14 ALLVGGAARDLLSGRTPKDFDWAAPDPEGAARAVAAQTGGSAFPLDPDRGYWRVSAGDVQ 73 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 D + D + D D LRRDFT+NAL G+V D GG DL+ R Sbjct: 74 HDFVP-QPDRLED--------------DLLRRDFTVNALALHADGRVTDPTGGRRDLQRR 118 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ + +A+ R D LR+LR R G + + A L + + ER+ E Sbjct: 119 QLRMVSEANLRA--DPLRLLRAARLSTTLGFRVEPATEAALRHLAAANLPLPAPERVREE 176 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---------LDQLSQVIEA-EQVFEW 258 +N LL + ++ + + G+ + ++ E LD L IEA Q+ Sbjct: 177 LNALLLHPDAARGVLRLQDLGLLRLYLPELAEGEGVSQGGFHHLDVLHHGIEALHQLLAR 236 Query: 259 KIDSLL 264 D+ L Sbjct: 237 SPDATL 242 >gi|78776206|ref|YP_392521.1| polynucleotide adenylyltransferase region [Sulfurimonas denitrificans DSM 1251] gi|78496746|gb|ABB43286.1| Polynucleotide adenylyltransferase region [Sulfurimonas denitrificans DSM 1251] Length = 411 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 92/399 (23%), Positives = 180/399 (45%), Gaps = 31/399 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 IVGG +RDSL+ L +DIDI + ++ + K+ S+G K++ Sbjct: 24 IVGGFIRDSLLFLESKDIDIEVYGVSSFEILEEILEEFGKINIVGKSFGVCKLMFVGYDL 83 Query: 90 DITTLRSD-LITDGRYA---KVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLND 144 D + R D I+ G K + D+K + RRDFTIN++ Y K++D G++D Sbjct: 84 DFSLPRMDNKISSGHRGFNVKTYYKLDFKTATSRRDFTINSIGYDVVSKKLLDPFYGIDD 143 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILS 201 L+N+ ++ + +D LR+LR +F A + E N+ + + L L Sbjct: 144 LKNKILRAVN--LESFAQDPLRVLRAAQFCARFNLSIEYNLAIT--CKEMVSHALLAQLP 199 Query: 202 SERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER++ E K LL+++ P + +E L++ +L + ++ A+Q+ Sbjct: 200 KERVFEEFKKLLLKSQKPSIGFT------LLREFGLEIYSNNLYVIDEI--AKQLTTSSK 251 Query: 261 DSLLRFIVLISWQDKKSILSM-AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 +L+ + + ++ K L + + + +E+ +I +N +L ++ +++ Sbjct: 252 RNLVLMLAGLYYKAAKDGLELILNRLTDEKELCRDVIKLVEV-YNYISLVSLDMIDEYFI 310 Query: 320 YGDKVMIAKLKIFL---ALHYNN---LTHQDTCFILQVLSDIIHWKKPLFP-LTGDDVVK 372 Y MI ++ + +++Y N ++ IL+ + + L P L G D++K Sbjct: 311 YKLATMINIEELLILSSSIYYANNPQTIYKSGELILKKAKKLGVFTNKLTPILQGRDLIK 370 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G+ P + IL +E ++ F+ E + L R L Sbjct: 371 NGVKPSIEFSKILNDAYEEQLHGKFKTYDEAIVWLKRYL 409 >gi|116074472|ref|ZP_01471734.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. RS9916] gi|116069777|gb|EAU75529.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. RS9916] Length = 416 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 20/172 (11%) Query: 24 KGEDKSCIVGGAVRDSLMN-------LSVQDIDI----ATTILPDRVMRIFSKTRYKVIP 72 +G + +VGGAVRD+L++ + D+D+ +T L + + R + Sbjct: 27 QGGVRLALVGGAVRDALLHHNHRDPWRELPDLDLVVEGSTEALAQGLRQRLGAERVPELR 86 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY---- 128 S+GT++++ D+ R + VV + D RRDFT+NA+ Sbjct: 87 VHGSFGTVEMVLDGVLLDLAQARQERYLAPGDNPVVEPGSLRNDLARRDFTVNAMALVLG 146 Query: 129 -ADQQGKVIDYVGGLNDLRNRTIKFIGDAH-HRILEDYLRILRFFRFFAHYG 178 D + +++D GG DL R + F+ H + +D R++R R+ A G Sbjct: 147 VGDAEPELLDLHGGQEDLEARQLNFL---HVGSVQDDPTRVVRGARYAARLG 195 >gi|167752331|ref|ZP_02424458.1| hypothetical protein ALIPUT_00575 [Alistipes putredinis DSM 17216] gi|167660572|gb|EDS04702.1| hypothetical protein ALIPUT_00575 [Alistipes putredinis DSM 17216] Length = 472 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 7/216 (3%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD + DID+ + + + ++GT + + + Sbjct: 31 VVGGYVRDFYLGRPSTDIDVVVVGSGIGLAEELGRELRTKVSVYKTFGTAALRTKGVEVE 90 Query: 91 ITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 R + + D R +V + D RRDFTINA L + G+++D G+ DL Sbjct: 91 FVGARKESYVRDSRKPQVE-AGTLEDDQRRRDFTINAMAWSLGEEDFGRLVDPFDGMRDL 149 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 I+ D +D LR++R RF + + + + A ++ ++ + I+S ERI Sbjct: 150 HEGIIRTPCDPDVTFSDDPLRMMRAVRFASQLNFR-LFPETFEAIVRNRERIGIVSRERI 208 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E+NK++ + P + G+ + IF ++Q + Sbjct: 209 AVELNKIVLSPVPSVGFDLLERTGLLELIFPEMQRL 244 >gi|260222271|emb|CBA31668.1| Multifunctional CCA protein [Curvibacter putative symbiont of Hydra magnipapillata] Length = 477 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 37/281 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P +++ K P + T +++Y Sbjct: 60 LVGGAVRDALLGLEVKDRDWVVVGSSPQQMLDAGYLAVGKDFPVFLHPRT-----QEEYA 114 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN--ALYADQQGK--------VIDY 138 T R G + D RRD TIN A AD G +ID Sbjct: 115 LARTERKTAPGYKGFAVHAAPDVTLEEDLARRDLTINSIAARADYTGANGTFDTKNLIDP 174 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKG 196 G DL+ R ++ + A ED +RILR RF A + + + ++ L+ ++ Sbjct: 175 FSGQADLQMRVLRHVTPA---FREDPVRILRVARFAARFTDFTVAPETTALMQTMVEDGE 231 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 + L ER+W EI K L P + + G K + + LD+L V ++ + + Sbjct: 232 VDHLVPERVWQEIAKGLMEARPSRMFEVLRSCGAMKRLLPE-----LDRLWGVPQSPE-Y 285 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 ++D+ + F++ +L A + P +R+ + Sbjct: 286 HPEVDTGVHFML---------VLDRAAQLDAPLAVRFACLG 317 >gi|62947202|gb|AAY22598.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947204|gb|AAY22599.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947206|gb|AAY22600.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947208|gb|AAY22601.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947210|gb|AAY22602.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947212|gb|AAY22603.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947214|gb|AAY22604.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947216|gb|AAY22605.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947218|gb|AAY22606.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947220|gb|AAY22607.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947222|gb|AAY22608.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947224|gb|AAY22609.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947226|gb|AAY22610.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947228|gb|AAY22611.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947230|gb|AAY22612.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947232|gb|AAY22613.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947234|gb|AAY22614.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947236|gb|AAY22615.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947240|gb|AAY22617.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947242|gb|AAY22618.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947254|gb|AAY22624.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947256|gb|AAY22625.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947258|gb|AAY22626.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947260|gb|AAY22627.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947262|gb|AAY22628.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947264|gb|AAY22629.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947266|gb|AAY22630.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947268|gb|AAY22631.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947270|gb|AAY22632.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947272|gb|AAY22633.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947276|gb|AAY22635.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947278|gb|AAY22636.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947280|gb|AAY22637.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947282|gb|AAY22638.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947284|gb|AAY22639.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947286|gb|AAY22640.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947288|gb|AAY22641.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947290|gb|AAY22642.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947292|gb|AAY22643.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947294|gb|AAY22644.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947296|gb|AAY22645.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947298|gb|AAY22646.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947300|gb|AAY22647.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947302|gb|AAY22648.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947304|gb|AAY22649.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947306|gb|AAY22650.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947308|gb|AAY22651.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947310|gb|AAY22652.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947312|gb|AAY22653.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947314|gb|AAY22654.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947316|gb|AAY22655.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947318|gb|AAY22656.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947320|gb|AAY22657.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947322|gb|AAY22658.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947324|gb|AAY22659.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947326|gb|AAY22660.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947328|gb|AAY22661.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947330|gb|AAY22662.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947332|gb|AAY22663.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947334|gb|AAY22664.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947336|gb|AAY22665.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947338|gb|AAY22666.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947340|gb|AAY22667.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947342|gb|AAY22668.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947344|gb|AAY22669.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947346|gb|AAY22670.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] Length = 263 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 30/172 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSI------ 75 I GG VRD L+ D+DIA T L + + + ++K Y P +I Sbjct: 65 ITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAK--YGAKPHNIHKIDKN 122 Query: 76 -------SYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 T K+ + D LRS+ T+ R KV F + D+LRRD T+NAL Sbjct: 123 PEKSKHLETATTKLFGVE--VDFVNLRSEKYTELSRIPKVCFGTP-EEDALRRDATLNAL 179 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 + + +G+V D+ GL DL++ ++ A L+D LR+LR RF + + Sbjct: 180 FYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRF 231 >gi|161833714|ref|YP_001597910.1| tRNA nucleotidyltransferase [Candidatus Sulcia muelleri GWSS] gi|152206204|gb|ABS30514.1| tRNA nucleotidyltransferase [Candidatus Sulcia muelleri GWSS] Length = 445 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 97/219 (44%), Gaps = 39/219 (17%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +NK KS +VGG VRD L+ +V + + I T + D + K KV I Sbjct: 19 VNKMNKKSYVVGGYVRDFLIGKNVCKKVYIVT--VGDCI-----KLAKKVCEKLDHKHKI 71 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR-----DFTINALYAD----Q 131 I KYF ++ + + + F K SL+ DFTIN L Sbjct: 72 NIF---KYFGTAIIKYNNLN------IEFFSANKRCSLKEFKKKIDFTINTLAISLNNLN 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 GK+ID GGL D+ IK D++ D LR++R RF Y E N D L I Sbjct: 123 YGKLIDPFGGLFDIMKNKIKSTIDSY-----DSLRMIRAIRF---YNEFNFQIDNLSIQI 174 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 +KILS ERI E NK+L + P I ++Y G+ Sbjct: 175 -----MKILSIERILYEFNKILLSNKPSTGIFYLYKIGL 208 >gi|160903130|ref|YP_001568711.1| CBS domain-containing protein [Petrotoga mobilis SJ95] gi|160360774|gb|ABX32388.1| CBS domain containing protein [Petrotoga mobilis SJ95] Length = 885 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 99/415 (23%), Positives = 176/415 (42%), Gaps = 63/415 (15%) Query: 31 IVGGAVRDSLMNLSVQ---------DIDIATT---ILPDRVMRIFSKTRYKVIP----TS 74 +VGG VRD L+ ++ + DID+ +L + + + +Y P S Sbjct: 487 VVGGFVRDLLLAINSKSNGTKSIPYDIDVVVEGDGLLFGKYVAKQLRAKYVEHPKFHTCS 546 Query: 75 ISY--GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY---- 128 I Y G KII DI T R++ + V K D RRDF+INA+ Sbjct: 547 IFYRNGENKII----RIDIATARTEYYEEAGELPKVELSTIKKDLYRRDFSINAMAIKIN 602 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + G ++D+ DL I+ + +ED RILR RF +G + I+ + L Sbjct: 603 SGSFGILMDFFNCKKDLEEGKIRILYPLS--FIEDPTRILRAIRFEQRFGFE-IEPNTLT 659 Query: 189 ASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQ 245 +A + L+ ++ RI E+ K+LE P+ AI M I +F +L++ Sbjct: 660 KLEEAVENGYLEKVTGMRIREELEKILEEPQPMKAIKRMGKLKIILHLFEKTYYSPTLEK 719 Query: 246 -LSQVIEAEQVFEWKIDSLLRFI--------VLISWQDKKSILSMAKKFSLPREIRYFLI 296 L ++ + + F+ + + L + VL+ + ++S+ + +++ LP++ LI Sbjct: 720 DLEKLFDVREYFKANLPNYLNKVRLFHIVLCVLLQYTPEESLKKITERYGLPKDFIKNLI 779 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 N FN+ ++ + DK +KL F N ++ F+ L + + Sbjct: 780 QVKNV-FNEISIDL----------NDKEKTSKLSYFYE-KTNGFQNEQLIFLAVKLPEEL 827 Query: 357 HWK---------KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 K K +TG D++K G G ++ L K++ +N Q +E Sbjct: 828 LAKYYEYLRKIEKLKLSITGKDLLKKGY-EGVQIKTKLEEIKKKLLNGEIQPGEE 881 >gi|187931052|ref|YP_001891036.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. mediasiatica FSC147] gi|187711961|gb|ACD30258.1| CCA-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] Length = 360 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 91/203 (44%), Gaps = 34/203 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M ++ G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEM--------------LANGFIKIAANFPVFI 50 Query: 90 ------DITTLRSDLITDGRYA--KVVFTR--DWKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ T Y +V F++ + D RRD TIN++ DQ KVID Sbjct: 51 HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIK--AKKG 196 G DL+NR ++ A +ED LR++R RF A N + ++A IK K G Sbjct: 111 NGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLCNFNFSIAQEMLALIKELVKTG 167 Query: 197 -LKILSSERIWSEINKLLEAKNP 218 L L+ ER+ E K L NP Sbjct: 168 ELNHLTRERLHIEFVKALN--NP 188 >gi|37522493|ref|NP_925870.1| polyA polymerase [Gloeobacter violaceus PCC 7421] gi|35213494|dbj|BAC90865.1| polyA polymerase [Gloeobacter violaceus PCC 7421] Length = 477 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 22/217 (10%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+L+N + +D+ D V R +V+ + G + + Sbjct: 37 ALVGGSVRDALLNRTRVPLDL------DFVCPGPVAERARVLARRLGAGFAVLDAEHEIV 90 Query: 90 DITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYAD-QQGKVIDYVGGLND 144 + L S + D F R D +D RRD+T+NA+ D G++ D G D Sbjct: 91 RL-VLDSGITLD-------FARRQGADLVSDLARRDYTVNAIAWDVHAGELFDPFDGRGD 142 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L RT++ I +A+ +++D LR+LR +R A + + A + L +S+ER Sbjct: 143 LTRRTLRAICEAN--LVDDPLRLLRGYRLAAQLDFAIEPATRAWIGLHAHR-LAAVSAER 199 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + E+ L+ A +A++ Y G+ + ++ + Sbjct: 200 VREELCALICAPTGADALLATYRDGLLADWLPEIAPM 236 >gi|170078104|ref|YP_001734742.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. PCC 7002] gi|169885773|gb|ACA99486.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. PCC 7002] Length = 407 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 23/234 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR----IFSKTRYKVIPTSISYGTIKII 83 ++C+VGGAVRD+L+ ID ++P + + I K + + +++ Sbjct: 25 EACLVGGAVRDALLQRQSDYIDF-DFVVPKKAVETARAIAKKYQAGFVVLDEMRQIARVV 83 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGL 142 R+ D D RD + RRD+ +NA+ Y + ++D + GL Sbjct: 84 FRQGTLDFAQQEGD----------SLERDLR----RRDYCVNAIAYHIRSDCLVDPLNGL 129 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL N+ ++ + + + +D LR+LR +R A G +D+ + +K +++ Sbjct: 130 ADLENKVLRMVTPEN--LADDPLRLLRAYRQAAQLG-FTLDAATRAQIRELAPLIKNIAA 186 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 ERI E+N LL + + G+ + SLD++ ++ Q F Sbjct: 187 ERIQHELNYLLHHPQGDRWLELAFQDGLLAHWLPAADQTSLDRMQRLTAIGQEF 240 >gi|73748251|ref|YP_307490.1| polyA polymerase family protein [Dehalococcoides sp. CBDB1] gi|73659967|emb|CAI82574.1| polyA polymerase family protein [Dehalococcoides sp. CBDB1] Length = 418 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 15/210 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMR----IFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L+N + +D D+ +L ++ + YK + + Sbjct: 38 LVGGLVRDFLLNKTPKDADL---VLAANAIKFGQGLLEGFNYKAT-LHPRFNNLSADING 93 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGL 142 DI+T R++ D V D KAD RRDF INA L G ++D GL Sbjct: 94 FKLDISTARNEFYPDPGKLPEVLEGDIKADLFRRDFKINAMALSLSPQDFGCLVDPYNGL 153 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ + + R +D RI R R+ G +I S+ L + + + ++ + Sbjct: 154 TDLKQHKLSVLHPKSFR--DDPSRIWRALRYSERLG-FDISSETLTLLQRDAQLIPLIGA 210 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +R+ E+ + + P N ++ G+ K Sbjct: 211 DRLRYEMECIFKEAKPENILLKAEETGVLK 240 >gi|289450662|ref|YP_003474410.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185209|gb|ADC91634.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 503 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 14/231 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ VGG VRD L+ L +D D+ L + ++ ++ ++G + Sbjct: 72 RAWAVGGCVRDKLLGLKPKDYDVEVHGLGEAELQAVLAKLGRIDTVGKAFGIYTL--SGT 129 Query: 88 YFDITTLRSD-LITDGRYAKVVFTR---DWKADSLRRDFTINALYADQ-QGKVIDYVGGL 142 D+ R + L+ G V + + + RRDFT NA+ D G++ D GG Sbjct: 130 NIDVALPREERLVGAGHRDFAVAVKPELGCRLAAARRDFTFNAIMEDPLTGEIFDPYGGR 189 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 +DL + F+ R ED LR+ R +F A + + D + I K L L Sbjct: 190 DDLARGRLHFV--EAGRFGEDPLRVFRAAQFAARFDCRATDE---LVDICRKMSLVTLPR 244 Query: 203 ERIWSEINK-LLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIE 251 ER+ +E++K L++ P N + + F +V + S+ QL V++ Sbjct: 245 ERVAAELHKALVQGGKPGNFFTFLAAVEQLRPWFGEVAAVKSMRQLVAVLD 295 >gi|94676619|ref|YP_588681.1| poly(A) polymerase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219769|gb|ABF13928.1| poly(A) polymerase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 349 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDF++N LY + V DY GGL DLR+ I+ IGD R ED +R+LR R Sbjct: 68 EEDAQRRDFSVNCLYYSIEDFTVRDYTGGLIDLRDGKIRMIGDPETRYREDPVRMLRAVR 127 Query: 173 FFA 175 F A Sbjct: 128 FAA 130 >gi|328875376|gb|EGG23741.1| tRNA nucleotidyltransferase [Dictyostelium fasciculatum] Length = 607 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 28/227 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSK---------TRYKVIPTS------ 74 + GG VRD L + DIDIA ++ + + +K R VI ++ Sbjct: 125 VAGGWVRDKLRGDNSHDIDIALDNMMGEAFAALVNKYLEDHHQETHRIGVIQSNPDQSKH 184 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 + T+KI + D+ LRS+ + + + D+ RRD TIN+L+ + + Sbjct: 185 LETATVKIF--DSWVDLVNLRSETYSSNSRIPEIKIGTPEQDAFRRDLTINSLFYNVNEN 242 Query: 134 KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLVAS 190 ++ D+ G G+ DL+ ++ L+D LR+LR RF +Y ID + A+ Sbjct: 243 RIEDFTGNGIVDLKCGIVRTPLPPLTTFLDDPLRVLRSIRFATRLYYA---IDHKLVEAA 299 Query: 191 IKA--KKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 K+ LK +S ERI E++ +L P AI +Y G+F + Sbjct: 300 SNPTVKEALKSKVSHERIGIELDGMLNGPRPDLAIQLIYEFGLFDHV 346 >gi|238797183|ref|ZP_04640685.1| Poly(A) polymerase [Yersinia mollaretii ATCC 43969] gi|238719030|gb|EEQ10844.1| Poly(A) polymerase [Yersinia mollaretii ATCC 43969] Length = 377 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+LR RF Sbjct: 69 DAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFA 128 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A + I + + L+ + R++ E KLL++ + + +F+ + Sbjct: 129 AKL-DMTICPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPL 187 Query: 235 F 235 F Sbjct: 188 F 188 >gi|325923325|ref|ZP_08184997.1| poly(A) polymerase [Xanthomonas gardneri ATCC 19865] gi|325546192|gb|EGD17374.1| poly(A) polymerase [Xanthomonas gardneri ATCC 19865] Length = 351 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 116 DSLRRDFTINALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY A + V DY GG D++ R +K IG+ R ED +R+LR R Sbjct: 43 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGNPELRYQEDPVRMLRAVRLA 102 Query: 175 AHYGEKNID-SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 A N D G I G L + R++ EI KL + + + + + G+ Sbjct: 103 AKL---NFDIEAGTAEPIPLLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLG 159 Query: 233 EIF 235 +F Sbjct: 160 ALF 162 >gi|290994753|ref|XP_002679996.1| tRNA nucleotidyltransferase/poly(A) polymerase [Naegleria gruberi] gi|284093615|gb|EFC47252.1| tRNA nucleotidyltransferase/poly(A) polymerase [Naegleria gruberi] Length = 616 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 151/351 (43%), Gaps = 72/351 (20%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT------------------TILPDRVMRIFSKTRYKVIP 72 + GG VR+ L+ L D+DIA LP + + I S + Sbjct: 127 VAGGWVRNKLLGLDGDDVDIAIDNMMGADFANYVSQYEKLKGLPSKAIGIISANPEQS-- 184 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + T I + D LRS+ + R + D+ RRD TINAL+ + Sbjct: 185 KHLETATTHIFGQS--IDFVNLRSEEYAEESRIPSNIKLGTPLQDANRRDLTINALFYNL 242 Query: 132 QGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY----------GE 179 ++I D+ G G++D+++R ++ L+D LR+LR RF + Sbjct: 243 NEQIIEDFTGKGMHDMKHRIVRTPLPPVQTFLDDPLRVLRSIRFACFFDFLIADEIMDAA 302 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA-----------IVHMYNG 228 N D D +A + +S ER+ +E+ K+L+ +P+ A IV Y+ Sbjct: 303 HNHDVDVALA--------EKVSRERVGTELLKILKGHDPVGAFALIGEMKIRHIVFTYST 354 Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 G K+ L +E ++ + IE + +W+ +SL R V+I +AKK++L Sbjct: 355 GDKKKKDLFPREY-INPIP--IEWKDQLQWE-NSLYRMRVMI---------KLAKKYNLS 401 Query: 289 REIRY-FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + R L++ F +S +I+++ Y ++++ L++ L L N Sbjct: 402 LDERVELLLAGFLSPITSHDMSREQIEEICY----NLIVSSLRLPLKLAGN 448 >gi|186684574|ref|YP_001867770.1| polynucleotide adenylyltransferase region [Nostoc punctiforme PCC 73102] gi|186467026|gb|ACC82827.1| Polynucleotide adenylyltransferase region [Nostoc punctiforme PCC 73102] Length = 440 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 37/231 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD+L+ + + +D+ ++P + +++ + I G + + ++ Sbjct: 27 MVGGAVRDALLGRTREYLDL-DFVIPSKAVKV-----ARAIAHHYKAGFVLLDAERQI-- 78 Query: 91 ITTLRSDLITDGRYAKVVF---TRDW---KADSL-----RRDFTINAL-YADQQGKVIDY 138 A+VVF T D+ + DSL RRDFT+NA+ Y ++ID Sbjct: 79 --------------ARVVFPHATADFAQQEGDSLEVDLHRRDFTVNAIAYNPHTQEIIDP 124 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 + G DL+ ++ I A+ + +D LR++R +R A G I+ A L Sbjct: 125 LQGYVDLQQGILRMISPAN--LEDDPLRLMRGYRQAAQLG-FTIEPGTRTAICSLASHLS 181 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 +++ER+ EI LL I + G+ +F + SL++L+ V Sbjct: 182 KVAAERVRVEIGYLLANSQGTPWISSAWEDGLLAPLFKNATRESLNKLAAV 232 >gi|167390862|ref|XP_001739538.1| poly(A) polymerase [Entamoeba dispar SAW760] gi|165896812|gb|EDR24139.1| poly(A) polymerase, putative [Entamoeba dispar SAW760] Length = 472 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 102/233 (43%), Gaps = 26/233 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP--TSISYGTIKIICRK-- 86 +VGG VRD L+ DIDI + FS+ K I T + I II + Sbjct: 35 VVGGWVRDKLLGKESHDIDITVDNMQSYQ---FSQYLQKYINEHTQHNVSGIGIIHKNHS 91 Query: 87 --KYFDITTLRSDLITDG----RYAKVVFTRDWK-----ADSLRRDFTINAL-YADQQGK 134 K+ + TLR D I R A + K D+ RRDFTINA+ Y + Sbjct: 92 AGKHLETATLRIDNIAIDICCLRAADYCDNDEEKIGTPLEDAQRRDFTINAMFYRVNDDQ 151 Query: 135 VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D G GL+DL++ I+ + +D R LR RF G + + L +K Sbjct: 152 IEDLTGCGLSDLKSGVIRTPISPKETLHDDPARALRAIRFSGKMG--FVLDEELEQEMKT 209 Query: 194 K----KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 K K LS ER+ E+ ++++ P I + G FK +F ++ EI+ Sbjct: 210 KYIGDKMTTGLSRERLGRELIGMIQSDRPAYCIDQIRRFGYFKGLFGELDEIT 262 >gi|117924282|ref|YP_864899.1| metal dependent phosphohydrolase [Magnetococcus sp. MC-1] gi|117608038|gb|ABK43493.1| metal dependent phosphohydrolase [Magnetococcus sp. MC-1] Length = 473 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 13/186 (6%) Query: 31 IVGGAVRDSLMN-LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG +RDSL + + ++D+ D + K Y + T+ I+ K+ Sbjct: 29 MVGGGLRDSLRHRFTAHELDLVVLKPLDEARELLQKAGYPAVVQGQRPNTL-ILPLKRQE 87 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNR 148 T+ G A+ R + D RD T+NA+ Y G +ID G+ DL Sbjct: 88 PPNTINLSCCCGGVKAE----RGIEEDLRHRDITVNAIAYCWPDGPLIDPFNGVKDLEEN 143 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAH-YGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 I+ + + + ED LR LRFFRF GE D + L A+ A L + E + Sbjct: 144 RIRLV-NGEETVREDPLRALRFFRFIIQLAGEP--DPEDLYAA--AHTTLYQIQPELLRG 198 Query: 208 EINKLL 213 E +++L Sbjct: 199 ETDRIL 204 >gi|78211736|ref|YP_380515.1| polyA polymerase [Synechococcus sp. CC9605] gi|78196195|gb|ABB33960.1| possible polyA polymerase [Synechococcus sp. CC9605] Length = 403 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 18/181 (9%) Query: 13 SDLINILSLLNKGEDKSCI--VGGAVRDSLMNL-------SVQDIDI-----ATTILPDR 58 S ++ L + D C+ VGG VRD L++ V D+D A ++ + Sbjct: 8 SSVLEALQRAGQSRDVRCLALVGGVVRDQLLHQRCGRSWSGVPDLDWVVEGDAAALVAEL 67 Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 V+++ S+ R + ++GT+ D+ T R + +V +AD Sbjct: 68 VVQVGSE-RISGVQEHGAFGTVAFQLDGIPLDLATARQEHYPAPAENPIVRAGTLEADLA 126 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+ D G++ID G DL + I+F+ + +D R++R R+ A Sbjct: 127 RRDFTINAMALDLVAGELIDLHHGQEDLASGQIRFLHAGS--VQDDPTRVIRAARYAARL 184 Query: 178 G 178 G Sbjct: 185 G 185 >gi|298242690|ref|ZP_06966497.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] gi|297555744|gb|EFH89608.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] Length = 524 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 53/260 (20%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-----------FSKTRYKVIPTSIS 76 + +VGG+VRD L+ D DIA LP + I F+ K +I Sbjct: 40 PAYLVGGSVRDLLLAQPCHDWDIA---LPGDTVTIARQLANTLGGAFAHMNDKACRITIP 96 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA---------- 126 T I FD++ R + I + +A RDFTINA Sbjct: 97 SPTGPDIV----FDLSPWRGETIEEDLHA--------------RDFTINAMALALPGLLA 138 Query: 127 -LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 L + Q +++D + G DL+NRT++ + R +D LR+LR RF HY + D Sbjct: 139 SLESGTQLELVDPLYGHTDLQNRTLRVASEQSFR--QDPLRMLRAMRFLVHY---QLRLD 193 Query: 186 GLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-VQEIS 242 A++ + L ++ R+ E+ LL N + + + G+F +F + +Q Sbjct: 194 PYTATLLKRDASLLPQVARARVHEELYALLRFPNTTDHLRLLDRYGLFTMLFPEFIQARG 253 Query: 243 LDQLSQVIEAEQVFEWKIDS 262 + Q S + VFE +++ Sbjct: 254 MPQPS--LHHWDVFEHSLET 271 >gi|309789740|ref|ZP_07684320.1| Polynucleotide adenylyltransferase region [Oscillochloris trichoides DG6] gi|308228226|gb|EFO81874.1| Polynucleotide adenylyltransferase region [Oscillochloris trichoides DG6] Length = 417 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 82/403 (20%), Positives = 160/403 (39%), Gaps = 56/403 (13%) Query: 31 IVGGAVRDSLMNLSV-QDIDIAT---TILPDRVMRIFSKTRYKVIPTSISYGTIKIIC-- 84 +VGG +RD L+ + + +D+D+ + + ++ +C Sbjct: 31 LVGGVIRDLLLGVPLGRDLDLVVEGDVAALSAALVAELGANLRAAHPEFGTASVAFVCDG 90 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD--------QQGKVI 136 + FD+ R ++ VV + D RRDF++NA+ + + G+ Sbjct: 91 AEVVFDLARARREVYPQPAVLPVVEPATLEEDLGRRDFSVNAMALELRIVDGHLRAGRWH 150 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRIL-EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D G DL R ++ + H + L +D R+LR R A N+ D I+ + Sbjct: 151 DPFAGQADLSQRCLRLL---HQQSLRDDPTRLLRGVRLAARL---NLHPDP-ATQIQIRH 203 Query: 196 G-----LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 L +L+ ERI E+ LE PL + H + +I + Sbjct: 204 AISQGYLSLLTPERILGELCLALEEPQPLRMLAHADAWELTPQIVPGLHATPHLAARLAR 263 Query: 251 ----EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 +V ++ + L F+ ++ D + ++++++ LP S F F++ Sbjct: 264 YAAHPPRRVPVGQVVAGL-FVYDLAAAD---LHALSQRYPLP--------SPFARLFSE- 310 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFL------ALHYNNLTHQDTCFILQVLSDIIHWKK 360 IP ++ L + +++ +FL A+H L + +T Q + + Sbjct: 311 ---IPRLRDLGPQLQTDLRPSQIDLFLRPYSDVAIHV--LHYAETGIAAQRAIHYLEQMR 365 Query: 361 PL-FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 PL PL G D+ + G+ PG +G IL + +++ Q ++ Sbjct: 366 PLRLPLDGRDIQRLGVAPGPAIGKILAGLRTAYLDGVIQTREQ 408 >gi|218562417|ref|YP_002344196.1| putative multifunctional Cca protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112360123|emb|CAL34917.1| putative multifunctional Cca protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926035|gb|ADC28387.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 372 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 124/265 (46%), Gaps = 41/265 (15%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69 ++ DL I L ++ +VGG+VRD + L + D DI I P +I K Sbjct: 10 NNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKL--- 66 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA- 126 + +G + + K +D+ R++ I+ G +V D K + RRDFTIN+ Sbjct: 67 ---GAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSM 123 Query: 127 ---LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 L+ D+ +D+ GGL DL ++ I + ED LR+LR F + + K I Sbjct: 124 MINLFNDE---FLDFYGGLKDLGVGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-IT 177 Query: 184 SDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 S+ S+K + + I LS +RI +E+ K K+P + + Y +QE+ Sbjct: 178 SE----SLKLMQSMDITDLSKDRINAELCKFF--KSPRLDVGYRY-----------LQEL 220 Query: 242 SLDQLSQVIEAEQVFE-WKIDSLLR 265 L++ QV E VF+ + +LLR Sbjct: 221 GLEK--QVFGFESVFKSSEFQNLLR 243 >gi|147827432|emb|CAN68616.1| hypothetical protein VITISV_023390 [Vitis vinifera] Length = 346 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 40/241 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-------------SKTR---YKVI--- 71 + GG VRD L+ DIDIA L D + R F K R Y +I Sbjct: 42 VAGGWVRDKLLGKECYDIDIA---LDDMLGREFCEKINDYLSCYRGGKARNRCYSMIILA 98 Query: 72 ------------PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 S T ++ ++ D LRS+ ++ + K D+ R Sbjct: 99 DYAIDSQFFSNPDQSKHLETARMRLFDEWIDFVNLRSEDYSENSRIPTMRFGTAKEDAYR 158 Query: 120 RDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RD TIN+L+ + V D+ G G+ DL++ I L+D LR+LR RF A + Sbjct: 159 RDLTINSLFYNINTSSVEDFTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRFGARF 218 Query: 178 G---EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 G ++ + ++A KI S ERI EI+ ++ P+ A+ ++ + +F + Sbjct: 219 GFILDEELKLAAGCDDVRAAIADKI-SRERIGHEIDLMISGNEPVKAMTYICDLLLFSVV 277 Query: 235 F 235 F Sbjct: 278 F 278 >gi|237803351|ref|ZP_04590936.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025332|gb|EGI05388.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 314 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-- 182 NA+ D+ G + D G DL R ++ + A ED LR+LR RF A Y Sbjct: 1 NAMAEDKDGNLTDPYNGQRDLEARILRHVSPA---FAEDPLRVLRVARFAARYAGYGFSI 57 Query: 183 --DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ L+ + LK L++ER W EI++ L + P I +++ G E+ +V+ Sbjct: 58 APETMDLMRQLSESGELKALTAERSWKEISRALMEEQPQVFIQVLHDCGALGELMPEVEA 117 Query: 241 I 241 + Sbjct: 118 L 118 >gi|215448253|ref|ZP_03435005.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T85] gi|289760079|ref|ZP_06519457.1| poly(A) polymerase [Mycobacterium tuberculosis T85] gi|289715643|gb|EFD79655.1| poly(A) polymerase [Mycobacterium tuberculosis T85] Length = 398 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 92 TTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDLR 146 TT R+D R+ +V F + D +RRDFT NA+ A G+ +D +GGL LR Sbjct: 20 TTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGGLAALR 79 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + + +D LR+LR RF + G + A + L +S+ER+ Sbjct: 80 AKVLDTPAAPSGSFGDDPLRMLRAARFVSQLG-FAVAPRVRAAIEEMAPQLARISAERVA 138 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +E++KLL ++P I M G+ + ++ + + Sbjct: 139 AELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRM 175 >gi|77163920|ref|YP_342445.1| polynucleotide adenylyltransferase [Nitrosococcus oceani ATCC 19707] gi|254435627|ref|ZP_05049134.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Nitrosococcus oceani AFC27] gi|123595046|sp|Q3JE31|CCA_NITOC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|76882234|gb|ABA56915.1| Polynucleotide adenylyltransferase [Nitrosococcus oceani ATCC 19707] gi|207088738|gb|EDZ66010.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Nitrosococcus oceani AFC27] Length = 406 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 21/217 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIP------TSISYGTIKII 83 +VGGAVRD L+ V++ D + P ++ + K P T Y + Sbjct: 5 LVGGAVRDKLLGRPVKERDYVVVGTTPANLLAQGYRPVGKDFPVFLHPQTQEEYALARTE 64 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 RK D D V D + RRD TINA+ G ++D GG Sbjct: 65 -RKTGPGYKGFEVDAAPD-----VTLEEDLQ----RRDLTINAIAEAADGSLLDPFGGQQ 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSS 202 DL ++ + A ED +RILR RF A + K ++ L+ ++ L Sbjct: 115 DLARGILRHVSPA---FAEDPVRILRAARFAARFNFKVAPETLALMEAMVTAGEADHLVP 171 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ER+W E+ + L P + G IF +++ Sbjct: 172 ERVWRELERALGESYPRRFFEILRACGALARIFPEIE 208 >gi|78183796|ref|YP_376230.1| polyA polymerase [Synechococcus sp. CC9902] gi|78168090|gb|ABB25187.1| possible polyA polymerase [Synechococcus sp. CC9902] Length = 404 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 20/174 (11%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMN-------LSVQDIDIATTILPDRVMRIFSK------- 65 + + G + IVGGAVRD L++ V D+D IL MR+ ++ Sbjct: 17 AAVGAGVKRLAIVGGAVRDGLLHERYGRVWTGVPDLDW---ILEGDAMRLAAELVKRCGE 73 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 R + S+GT+ + D R + VV +D +RRDFTIN Sbjct: 74 QRVTELQNYGSFGTVALQLDGIALDFAMARKETYPMPGENPVVEPGSLDSDLVRRDFTIN 133 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 A+ D G++ID G DL R + F+ D + +D R++R R+ A G Sbjct: 134 AMAQDLLSGQLIDPHRGQQDLAERRLVFLHD--ESVSDDPTRVIRASRYAARLG 185 >gi|322709898|gb|EFZ01473.1| putative tRNA nucleotidyltransferase [Metarhizium anisopliae ARSEF 23] Length = 514 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 28/210 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTR-----YKVIPTSIS--YGTI 80 GG VRD L+ + DID+A T I + MR + T + + P I + Sbjct: 57 AGGWVRDKLLGIESHDIDVAINAMTGIHFAQRMREYCNTEKGSRIHAIKPDDIGNLHNVS 116 Query: 81 KIICRKKYFDITTLR-----SDLIT--------DGRYAKVVFTRDWKADSLRRDFTINAL 127 K + K+ + +R DL+ D R V F + D+LRRD TINA Sbjct: 117 KNPDKSKHLETAMVRIFGLDLDLVNLRKETYAEDSRNPTVEFGTA-EEDALRRDATINAF 175 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSD 185 + + ++ D+ GG+ DL + ++ +D LR+LR RF + G ++ Sbjct: 176 FYNIHTEQIEDFTGGMRDLTAKVLRTPLSPLETFKDDPLRVLRLVRFASRLGFSIEEETK 235 Query: 186 GLVASIKAKKGLKI-LSSERIWSEINKLLE 214 ++A + L++ +S ER+ +E+ K+L+ Sbjct: 236 KVMAHPEVLDALQVKISRERVGTELEKMLK 265 >gi|147669033|ref|YP_001213851.1| polynucleotide adenylyltransferase region [Dehalococcoides sp. BAV1] gi|146269981|gb|ABQ16973.1| Polynucleotide adenylyltransferase region [Dehalococcoides sp. BAV1] Length = 416 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 15/210 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMR----IFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L+N + D D+ +L ++ + YK + + Sbjct: 38 LVGGLVRDFLLNKTPNDADL---VLATNAIKFGQGLLEGFNYKAT-LHPRFNNLSADING 93 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGL 142 DI+T R++ D V D KAD RRDF INA L G ++D GL Sbjct: 94 FKLDISTARNEFYPDPGKLPEVLEGDIKADLFRRDFKINAMALSLSPQDFGCLVDPYNGL 153 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ + + R +D RI R R+ G +I S+ L + + + ++ + Sbjct: 154 TDLKQHKLSVLHPKSFR--DDPSRIWRALRYSERLG-FDISSETLTLLQRDAQLITLIGA 210 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +R+ E+ + + P N ++ G+ K Sbjct: 211 DRLRYEMECIFKEAKPENILLKAEETGVLK 240 >gi|57167790|ref|ZP_00366930.1| tRNA nucleotidyltransferase [Campylobacter coli RM2228] gi|305432188|ref|ZP_07401352.1| polyA polymerase family protein [Campylobacter coli JV20] gi|57020912|gb|EAL57576.1| tRNA nucleotidyltransferase [Campylobacter coli RM2228] gi|304444731|gb|EFM37380.1| polyA polymerase family protein [Campylobacter coli JV20] Length = 342 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 25/214 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD + L + D DI I P ++ K + +G + + K + Sbjct: 1 MVGGSVRDLFLGLEIYDYDIELYDITPSDFEKMMKKL------GAQGFGKSFFVYKFKNY 54 Query: 90 DITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLN 143 D R++ T + +V D K + RRDFTIN+ L+ D+ +D+ GGL Sbjct: 55 DFALARTENKTGYGHTGFEVQICNDEKLGAKRRDFTINSMMINLFNDE---FLDFYGGLK 111 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LS 201 DL ++ I + ED LRILR F + + K D S+K + + I LS Sbjct: 112 DLEQGILRHIDQTSFQ--EDSLRILRAVAFASRFDFKIADE-----SLKLMQSMNIKDLS 164 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +RI +E+ K ++ ++ + KEIF Sbjct: 165 RDRINAELYKFFKSSKLEVGYKYLQELNMEKEIF 198 >gi|18377862|gb|AAL67117.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] gi|22137254|gb|AAM91472.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] Length = 527 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 18/170 (10%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTSI 75 L +KG D +VGG VRD ++ + +D DI T+ V+R F + R+ + I Sbjct: 90 LKSKGHDVY-LVGGCVRDLILKRTPKDFDILTSAELREVVRTFPRCEIVGRRFPICHVHI 148 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR------RDFTINALYA 129 I++ F + S T K D D +R RDFTIN L Sbjct: 149 GDDLIEV----SSFSTSAQNSSRNTRTE-CKESSGSDGDEDCIRLNNCLQRDFTINGLMF 203 Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D KV+ DY+GG+ D+R ++ A +D RILR R A G Sbjct: 204 DPYAKVVYDYLGGMEDIRKAKVRTEIHAGTSFHQDCARILRAIRIAARLG 253 >gi|57242625|ref|ZP_00370562.1| tRNA nucleotidyltransferase [Campylobacter upsaliensis RM3195] gi|57016554|gb|EAL53338.1| tRNA nucleotidyltransferase [Campylobacter upsaliensis RM3195] Length = 370 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 21/231 (9%) Query: 14 DLINILSL----LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 DLIN L L ++ +VGG+VRD + L ++D DI D F K Sbjct: 7 DLINKLQFISDFLRPHTQRAYLVGGSVRDYFLGLELRDFDIEVY---DISFEKFDLLMQK 63 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA--KVVFTRDWKADSLRRDFTINAL 127 + + YG + + + +D+ R++ + +V D + RRDFT+NAL Sbjct: 64 L--GANGYGKSFFVYKFQNYDLALARTENKNAPGHKGFEVQICNDEALAAKRRDFTLNAL 121 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + G+++D+ GG DL+ ++ I D +ED LR+LR F + + Sbjct: 122 MINIFSGELLDFYGGFEDLKKGLLRHIDDKS--FMEDSLRVLRAVGFVSRFKFYLAPQ-- 177 Query: 187 LVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S+ K + I LS +RI +E+ K + ++ A + + G+ K++F Sbjct: 178 ---SLNLMKTMDISDLSEDRINAELYKFFKGEHLALAYKALQDLGLEKKLF 225 >gi|118443195|ref|YP_878104.1| polyA polymerase family protein [Clostridium novyi NT] gi|118133651|gb|ABK60695.1| polyA polymerase family protein, putative [Clostridium novyi NT] Length = 394 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 29/192 (15%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--------KVIPTSISYGT--- 79 IVGGA+RDS++N+ +DIDI + + I SK + K ++I + Sbjct: 31 IVGGAIRDSILNVKPKDIDIC---IESNSINIISKLNFVKEYKYYEKFQTSTIVFENEVE 87 Query: 80 IKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVID 137 I +I CRK+ ++ +G KV+ + D RRDFT NA+ Y +ID Sbjct: 88 IDLIRCRKEKYEF---------NGALPKVI-PSNIMDDLFRRDFTCNAIAYNLVNDTIID 137 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 G +D+ ++ I + + +ED RI R ++ Y K D D + S+ KK + Sbjct: 138 PFNGRDDINKGILRKIHENSY--MEDPTRIFRAIKYANRYDFKIHDKDEIKESL-LKKSM 194 Query: 198 KILSSERIWSEI 209 +S++RI EI Sbjct: 195 NNISNDRIIREI 206 >gi|294900736|ref|XP_002777091.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239884545|gb|EER08907.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 255 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 87/202 (43%), Gaps = 20/202 (9%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK---TRYKVIPTSISYGTIKI------ 82 GG VRD L+ DIDIA + K TR + S G ++ Sbjct: 46 AGGWVRDKLLGKESDDIDIAVDDMSGEAFAYKVKDFLTRTSPGASCSSVGVVRANPDQSK 105 Query: 83 ---ICRKKYFDIT----TLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGK 134 + FDI+ LR++ T VV + D+ RRDFTINAL+ + + Sbjct: 106 HLETATLRVFDISLDVNNLRTETYTLDSRIPVVALGTPQEDASRRDFTINALFYNLRTAS 165 Query: 135 VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 V D+ G GL DLR I+ + +D LRILR RF G K D AS Sbjct: 166 VEDFTGTGLADLRAGVIRTPLEPTITFQDDPLRILRAVRFSTRLGFKLDDEIMKAASDPN 225 Query: 194 KKGLKI--LSSERIWSEINKLL 213 GL + +S ER EI+K+L Sbjct: 226 IYGLLLVKVSRERWGVEIHKML 247 >gi|118498171|ref|YP_899221.1| tRNA CCA-pyrophosphorylase [Francisella tularensis subsp. novicida U112] gi|194324344|ref|ZP_03058117.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Francisella tularensis subsp. novicida FTE] gi|208780188|ref|ZP_03247530.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Francisella novicida FTG] gi|166233854|sp|A0Q8A2|CCA_FRATN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|118424077|gb|ABK90467.1| tRNA nucleotidyl transferase [Francisella novicida U112] gi|194321409|gb|EDX18894.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Francisella tularensis subsp. novicida FTE] gi|208743837|gb|EDZ90139.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Francisella novicida FTG] Length = 369 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 36/204 (17%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ ++ +D D + D ++ + G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEML---------------ANGFIKIAANFPVF 49 Query: 90 -------DITTLRSDLITDGRYA--KVVFTR--DWKADSLRRDFTINALYADQQGKVIDY 138 + RS+ T Y +V F++ + D RRD TIN++ DQ KVID Sbjct: 50 IHPQTKQEYALARSEKKTANGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDP 109 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAK 194 G DL+NR ++ A +ED LR++R RF A N ++ L+ + Sbjct: 110 FNGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLSNFNFSIAEETLTLIKELIKT 166 Query: 195 KGLKILSSERIWSEINKLLEAKNP 218 L L+ ER+ E K L NP Sbjct: 167 GELNHLTRERLHIEFVKALN--NP 188 >gi|302764532|ref|XP_002965687.1| hypothetical protein SELMODRAFT_84963 [Selaginella moellendorffii] gi|300166501|gb|EFJ33107.1| hypothetical protein SELMODRAFT_84963 [Selaginella moellendorffii] Length = 231 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 22/201 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP-----DRVMRIFSKT----RYKVIPTSISYG--- 78 + GG VRD L+ + D+DIA + DRV+ KT YKVI ++ Sbjct: 32 VAGGWVRDKLLGVESHDLDIALDGMTGQQFCDRVLPCLRKTDPSCSYKVIKSNPERSKHL 91 Query: 79 -TIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 T K+ D+ LRS+ + D R + D+ RRD TIN+L+ + KV Sbjct: 92 ETTKLEILGGELDVVNLRSETYSNDSRIPTSMKFGTPSEDAYRRDLTINSLFYNVAADKV 151 Query: 136 IDYVG-GLN--DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVA 189 D+ G GL DL+ I+ L+D LR+LR RF A + ++ ++ Sbjct: 152 EDFTGRGLCAMDLKLGKIRTPLPPLVTFLDDPLRVLRSIRFAARFNFELDEELECVASAD 211 Query: 190 SIKAKKGLKILSSERIWSEIN 210 S+KA KI + ERI E+ Sbjct: 212 SVKAAFETKI-TRERISQEVE 231 >gi|157736651|ref|YP_001489334.1| tRNA nucleotidyltransferase/poly(A) polymerase [Arcobacter butzleri RM4018] gi|157698505|gb|ABV66665.1| tRNA nucleotidyltransferase/poly(A) polymerase [Arcobacter butzleri RM4018] Length = 324 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%) Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 +K ++RRDFTINA+ D + +++D G+NDL+N+ IK I D +ED LR+ R Sbjct: 38 FKEAAIRRDFTINAIGYDYFKNEILDPFDGMNDLKNKIIKHIDD--KTFVEDSLRVYRSV 95 Query: 172 RFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWSE 208 +F + + E ID + L I + LK L ER++ E Sbjct: 96 QFASRF-EFKIDENTKILCKKIVSSGELKFLPKERVFEE 133 >gi|113953997|ref|YP_729464.1| polyA polymerase family protein [Synechococcus sp. CC9311] gi|113881348|gb|ABI46306.1| polyA polymerase family protein [Synechococcus sp. CC9311] Length = 434 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 19/171 (11%) Query: 25 GEDKSCIVGGAVRDSLMN-------LSVQDIDI----ATTILPDRVMRIFSKTRYKVIPT 73 G + +VGGAVRD+L++ + D+D+ + + L + R + R + + Sbjct: 45 GVSRLALVGGAVRDALLHDEHCDPWRELPDLDLVMEGSASELAAALQRHYGDERVQEVRV 104 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA------L 127 +YGT ++ D+ R D VV + + D RRDFT+NA L Sbjct: 105 HGAYGTAELSFDGVLLDLAGARQDHYPAPGENPVVESGSLERDLERRDFTVNAMALELSL 164 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D++ ++D GG L R + F+ + + +D R++R R+ A G Sbjct: 165 SGDREPLLLDPHGGQAHLERRELAFLHASS--VADDPTRVIRAARYGARLG 213 >gi|281205388|gb|EFA79580.1| tRNA ADENILYL transferase [Polysphondylium pallidum PN500] Length = 496 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 26/209 (12%) Query: 31 IVGGAVRDSLMNLSVQ-----DIDIATTILPDR----------VMRIFSKTRYKV---IP 72 + GG VR+ L+++ DIDIA + + R + S+ +Y V Sbjct: 115 VSGGWVRNKLLSIDSSSSGYFDIDIAISGITGREFVDLIEHYRIEHGLSQKKYLVRRNPD 174 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 S T I+ FD T LR++ T R ++V D+ RRD TIN+LY + Sbjct: 175 KSKHLETASIVIDGYTFDFTGLRAEQYDTHTRIPQIV-DGTPTTDAFRRDITINSLYFNL 233 Query: 132 QG-KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GL 187 + +V D+ G G++DL N+ I+ H ++ED LR LR RF + NID Sbjct: 234 ETYRVEDFTGNGIDDLCNKYIRTPLSPHITLIEDPLRALRVLRFATRF-HFNIDPSLYRS 292 Query: 188 VASIKAKKGLKI-LSSERIWSEINKLLEA 215 + SI+ + L +S ERI +E + ++ + Sbjct: 293 IESIEVRSALGYKVSKERIKNEFSLMMSS 321 >gi|254373517|ref|ZP_04989004.1| tRNA nucleotidyl transferase [Francisella tularensis subsp. novicida GA99-3549] gi|151571242|gb|EDN36896.1| tRNA nucleotidyl transferase [Francisella novicida GA99-3549] Length = 369 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 88/203 (43%), Gaps = 34/203 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M ++ G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEM--------------LANGFIKIAANFPVFI 50 Query: 90 ------DITTLRSDLITDGRYA--KVVFTR--DWKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ T Y +V F++ + D RRD TIN++ DQ KVID Sbjct: 51 HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKK 195 G DL+NR ++ A +ED LR++R RF A N ++ L+ + Sbjct: 111 NGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLSNFNFSIAQETLTLIKKLIKTG 167 Query: 196 GLKILSSERIWSEINKLLEAKNP 218 L L+ ER+ E K L NP Sbjct: 168 ELNHLTRERLHIEFVKALN--NP 188 >gi|145355788|ref|XP_001422131.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582371|gb|ABP00448.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 613 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 ++ RRDFT+NA+Y D + +++D+ GG+ND ++ +GD + + ED +R+LR R Sbjct: 271 NARRRDFTVNAMYYDPWRNEILDFHGGMNDTHAGVVRTVGDTNVSLREDPVRMLRAIRLA 330 Query: 175 AHYG 178 A +G Sbjct: 331 ARHG 334 >gi|315931203|gb|EFV10175.1| poly A polymerase head domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 343 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 39/244 (15%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD + L + D DI L D ++ F K K+ + +G + + K +D Sbjct: 1 MVGGSVRDLFLGLKICDYDIE---LYDIKLKDFEKIMQKL--GAQGFGKSFFVYKFKNYD 55 Query: 91 ITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 + R++ I+ G +V D K + RRDFTIN+ L+ D+ +D+ GGL D Sbjct: 56 LALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDE---FLDFYGGLKD 112 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSS 202 L ++ I + ED LR+LR F + + K I S+ S+K + + I LS Sbjct: 113 LGAGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-ITSE----SLKLMQSMDITDLSK 165 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE-WKID 261 +RI +E+ K K+P + + Y +QE+ L++ QV E VF+ + Sbjct: 166 DRINAELYKFF--KSPRLDVGYRY-----------LQELGLEK--QVFGFESVFKSLEFQ 210 Query: 262 SLLR 265 +LLR Sbjct: 211 NLLR 214 >gi|221056136|ref|XP_002259206.1| tRNA nucleotidyltransferase [Plasmodium knowlesi strain H] gi|193809277|emb|CAQ39979.1| tRNA nucleotidyltransferase, putative [Plasmodium knowlesi strain H] Length = 771 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 37/252 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK-- 87 +VGG VRD + +S DID+ + + + + ++G IKI + Sbjct: 187 VVGGWVRDKFLGISNDDIDVTVDNMKGSEFCNYIKEYIKEKEKKNFNFGIIKINSDQSKH 246 Query: 88 -----------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 DI LR++ T+ + + D+LRRDFT+NAL+ + +V Sbjct: 247 LETSSFHLFNFQVDIVNLRNEKYTEESRIPEIVIGTPEEDALRRDFTVNALFYNLSSRRV 306 Query: 136 IDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNI----DSDGL 187 DY G+ L+N+ I D + L+D LRI+R RF + EK+I ++ + Sbjct: 307 EDYTKRGILHLKNKVICTPLDPYTTFLDDPLRIIRCIRFCGVFNFLVEKSIFDVLKNEHI 366 Query: 188 VASIKAKKGLKILSSERIWSEINKLLE--AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + + K K +S R+ +EI K+ +N + ++ + KEIF Q I Sbjct: 367 MKAFKKK-----ISRSRLSTEILKIFSKRCENIVLSLTLLNYSSYAKEIFSLPQNI---- 417 Query: 246 LSQVIEAEQVFE 257 ++ E+VFE Sbjct: 418 ---FVKNEEVFE 426 >gi|289567863|ref|ZP_06448090.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T17] gi|289541616|gb|EFD45265.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T17] Length = 396 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 5/140 (3%) Query: 103 RYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158 R+ +V F + D +RRDFT NA+ A G+ +D +GGL LR + + Sbjct: 30 RHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGGLAALRAKVLDTPAAPSG 89 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 +D LR+LR RF + G + A + L +S+ER+ +E++KLL ++P Sbjct: 90 SFGDDPLRMLRAARFVSQLG-FAVAPRVRAAIEEMAPQLARISAERVAAELDKLLVGEDP 148 Query: 219 LNAIVHMYNGGIFKEIFLDV 238 I M G+ + ++ Sbjct: 149 AAGIDLMVQSGMGAVVLPEI 168 >gi|219555754|ref|ZP_03534830.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T17] Length = 396 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%) Query: 103 RYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158 R+ +V F + D +RRDFT NA+ A G+ +D +GGL LR + + Sbjct: 30 RHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGGLAALRAKVLDTPAAPSG 89 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 +D LR+LR RF + G + A + L +S+ER+ +E++KLL ++P Sbjct: 90 SFGDDPLRMLRAARFVSQLG-FAVAPRVRAAIEEMAPQLARISAERVAAELDKLLVGEDP 148 Query: 219 LNAIVHMYNGGIFKEIFLDVQEISL 243 I M G+ + ++ + + Sbjct: 149 AAGIDLMVQSGMGAVVLPEIGGMRM 173 >gi|56750577|ref|YP_171278.1| polyA polymerase [Synechococcus elongatus PCC 6301] gi|56685536|dbj|BAD78758.1| similar to polyA polymerase [Synechococcus elongatus PCC 6301] Length = 909 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 49/329 (14%) Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 + DI T R++ V + D RRDFTINAL G+++D+ GG Sbjct: 564 WVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINALAIRLTEPHAGELLDFFGGRL 623 Query: 144 DLRNRTIKFIGDAH-HRILEDYLRILRFFRFFAHYG-----------EKNIDSDGLVASI 191 DL R ++ + H + +ED RI R RF G +DS G+ Sbjct: 624 DLEARQVRVL---HVNSFIEDPTRIFRAVRFAVRLGFAIEEQTRRQIRYALDS-GVYQRT 679 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--------LDVQEISL 243 + + G+ R+ +E+ +LEAK L A+ + + F+ + L+ Q Sbjct: 680 QGENGVTPALQTRLRAELQLILEAKYWLPALRELGSLQAFRCLHSDCWWTRSLEAQLRCC 739 Query: 244 DQLSQVIEAE------QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 D+LS+ + + + W LLR L++ + +A++ LP+++ L Sbjct: 740 DRLSRRWQQQAHPSLKPILPW----LLRLQSLLTSLPEPG--PIAQRLQLPQDVIQRL-Q 792 Query: 298 FFNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + C Q T L ++ Y + + I L L L I + L Sbjct: 793 QWPCAIAQLTQLDTAQLPSQLY----RQLANYDPITLLLAAAVLPRSSRRVISRYL---W 845 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 W + PL+G D+ K G PG + IL Sbjct: 846 QWLPLVLPLSGHDLKKLGYRPGPQFRQIL 874 >gi|88808104|ref|ZP_01123615.1| possible polyA polymerase [Synechococcus sp. WH 7805] gi|88788143|gb|EAR19299.1| possible polyA polymerase [Synechococcus sp. WH 7805] Length = 415 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 18/179 (10%) Query: 24 KGEDKSCIVGGAVRDSLMN-------LSVQDIDI----ATTILPDRVMRIFSKTRYKVIP 72 +G + +VGGAVRD+L++ + D+D+ + L + + F R + Sbjct: 27 QGLGRLALVGGAVRDALLHQCYGASWTGLPDLDLVLEGSCADLARGLQQRFGAERMPWLQ 86 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LY 128 +GT +++ D+ R + +V + D RRDFT NA L+ Sbjct: 87 LHERFGTAELMLDGVLIDLAGAREERYPLPGENPIVQPGPLEEDLARRDFTANAMALVLH 146 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D +++D GGL+ L +R + F+ +A + +D R++R R+ A G ++DS L Sbjct: 147 GDGSQQLLDPHGGLDHLASRQLVFLHEAS--VSDDPTRVIRAARYGARLG-FDLDSGSL 202 >gi|118602242|ref|YP_903457.1| polynucleotide adenylyltransferase region [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567181|gb|ABL01986.1| Polynucleotide adenylyltransferase region [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 362 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 19/217 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 K +VGGAVRD L+ ++ + + + +++ + + K P + GT Sbjct: 2 KVYLVGGAVRDQLLGIADEFTEKDWMVVGSSSKQMLDLGYRQVGKNFPVFLHPGT----- 56 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 ++ + + L + T + K + + D RRD TINA+ A + G++ D G Sbjct: 57 -QEEYALARLERKIGTGYKGFKFDISSQVTLEQDLFRRDLTINAM-AQKAGELFDPFNGQ 114 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL N ++ + +A ED +RILR RF A + + + L++ + + Sbjct: 115 EDLNNGILRHVSNA---FSEDPVRILRIARFAARFKKFGFKVAHQTHQLMSQMVTSGEVD 171 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 L+ ER++ E+NK L + P + G ++++F Sbjct: 172 ALTPERVFKELNKALSYETPSAFFKVLTACGAYQKVF 208 >gi|81299785|ref|YP_399993.1| CBS [Synechococcus elongatus PCC 7942] gi|81168666|gb|ABB57006.1| CBS [Synechococcus elongatus PCC 7942] Length = 909 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 49/329 (14%) Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 + DI T R++ V + D RRDFTINAL G+++D+ GG Sbjct: 564 WVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINALAIRLTEPHAGELLDFFGGRL 623 Query: 144 DLRNRTIKFIGDAH-HRILEDYLRILRFFRFFAHYG-----------EKNIDSDGLVASI 191 DL R ++ + H + +ED RI R RF G +DS G+ Sbjct: 624 DLEARQVRVL---HVNSFIEDPTRIFRAVRFAVRLGFAIEEQTRRQIRYALDS-GVYQRT 679 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF--------LDVQEISL 243 + + G+ R+ +E+ +LEAK L A+ + + F+ + L+ Q Sbjct: 680 QGENGVTPALQTRLRAELQLILEAKYWLPALRELGSLQAFRCLHSDCWWTRSLEAQLRCC 739 Query: 244 DQLSQVIEAE------QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 D+LS+ + + + W LLR L++ + +A++ LP+++ L Sbjct: 740 DRLSRRWQQQAHPSLKPILPW----LLRLQSLLTSLPEPG--PIAQRLQLPQDVIQRL-Q 792 Query: 298 FFNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + C Q T L ++ Y + + I L L L I + L Sbjct: 793 QWPCAIAQLTQLDTAQLPSQLY----RQLANYDPITLLLAAAVLPRSSRRVISRYL---W 845 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 W + PL+G D+ K G PG + IL Sbjct: 846 QWLPLVLPLSGHDLKKLGYRPGPQFRQIL 874 >gi|67922052|ref|ZP_00515568.1| CBS:Polynucleotide adenylyltransferase [Crocosphaera watsonii WH 8501] gi|67856268|gb|EAM51511.1| CBS:Polynucleotide adenylyltransferase [Crocosphaera watsonii WH 8501] Length = 904 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 32/170 (18%) Query: 31 IVGGAVRDSLMN-----LSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 IVGGAVRD L+ +S+QDID+ A L + + + R V Sbjct: 490 IVGGAVRDLLLTNNNQKVSLQDIDLVVDGFHRSADVGAGVELASTIQKKYPNCRLSV--- 546 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T ++ K + DI T R++ V + + D RRDFTINAL Sbjct: 547 HGEFQTAALLWHKDPEFGSLWIDIATSRTEFYPYPAANPEVESSSIRQDLYRRDFTINAL 606 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 ++G+++D+ GGL DL+ + ++ + + +ED RI R RF Sbjct: 607 AVRLTPPREGELLDFFGGLLDLKGKEVRVL--HANSFIEDPTRIYRAVRF 654 >gi|305664812|ref|YP_003861099.1| putative polyA polymerase [Maribacter sp. HTCC2170] gi|88707934|gb|EAR00173.1| putative polyA polymerase [Maribacter sp. HTCC2170] Length = 478 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 14/231 (6%) Query: 28 KSCIVGGAVRDSLMNLSV-QDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 +S ++GG VRD +++ +DIDI + L ++V + I ++GT + Sbjct: 27 ESYVIGGFVRDYILDRGTHKDIDIVSIGSGIALAEKVASMLPGN--PKISIFKNFGTAML 84 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDY 138 + R + +V K D RRDFTINAL + G ++D Sbjct: 85 RHHDMELEFVGARKESYQRDSRKPIVEDGTLKEDQERRDFTINALALSLNKENFGDLLDP 144 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G+ DL + I+ + +D LR++R RF + I+ L A + K+ +K Sbjct: 145 FEGVLDLDKKIIRTPLEPCVTYSDDPLRMMRAIRFATQLNFE-IELRSLQAITENKERIK 203 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I+S+ER E++K++ + P ++N G+ I ++ +L+ + +V Sbjct: 204 IISAERTVDELHKIMACEKPSIGFSLLHNTGLLDYILPEL--TALEGIEEV 252 >gi|67924728|ref|ZP_00518132.1| Polynucleotide adenylyltransferase [Crocosphaera watsonii WH 8501] gi|67853415|gb|EAM48770.1| Polynucleotide adenylyltransferase [Crocosphaera watsonii WH 8501] Length = 424 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 27/214 (12%) Query: 29 SCIVGGAVRDSLMNLSVQ--DIDIATTILPDRVM----RIFSKTRYKVIPTSISYGTIKI 82 + +VGG VRD+L+N D+D A LP+ V+ +I +K + ++ Sbjct: 26 AYLVGGMVRDALLNRKRDYLDLDFA---LPNLVIETAKKIANKYHAGFVVLDDKRNIARV 82 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGG 141 + ++ D D I + D RRDFTINA+ Y + K+ID G Sbjct: 83 VFKQGTVDFAQQEGDSI--------------EKDLSRRDFTINAIAYNFHKQKLIDPFHG 128 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL+ +T++ I + + +D LR+LR +R A I++ ++ + ++ Sbjct: 129 LKDLQIKTMRMI--SVKNLQDDPLRLLRVYRQAAQLN-FTIETQTRQTIVELSSLINQIA 185 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +ER+ SE N LL + N + + G+ K F Sbjct: 186 AERVQSEFNYLLGNEGGSNWFIQIEQDGLLKPWF 219 >gi|159896797|ref|YP_001543044.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779] gi|159889836|gb|ABX02916.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779] Length = 517 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 25/162 (15%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK---TRYKVIPTSISYGTIK 81 G + +VGG +RD ++ + D+D+ + + +K V+ G + Sbjct: 29 GSQPAWVVGGTLRDLVIGRPLHDVDLVVNQPAIGLAQSLAKQLNASLVVLDAERDIGRV- 87 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-----QQGKVI 136 ++ KY D+ LR+ D +D RDFTINA+ A Q G++I Sbjct: 88 VLADGKYLDLAHLRA--------------ADLTSDLTDRDFTINAMAAPLYEQAQLGQII 133 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D GLND+ T++ + + + D LR+LR R A G Sbjct: 134 DPHAGLNDIATGTLRMVQA--NALANDPLRMLRAVRIAAQLG 173 >gi|166367858|ref|YP_001660131.1| polyA polymerase [Microcystis aeruginosa NIES-843] gi|166090231|dbj|BAG04939.1| polyA polymerase [Microcystis aeruginosa NIES-843] Length = 405 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 19/196 (9%) Query: 22 LNKGE--DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 +N+ E + + +VGGAVRD+L+N ID+ ++P++ + I ++ + Sbjct: 17 INRQELPENAYLVGGAVRDALLNRQKDYIDL-DFVVPEKAIEIAQTIAHQYKAGFVVLDA 75 Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDY 138 ++ I R + T + +G ++ D RRDFT+NAL Y ++ D Sbjct: 76 VRQIARVVFPQGTLDFAQ--QEGESLEI--------DLKRRDFTVNALAYNLHTQEIFDP 125 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL 197 +GGL DL ++++ I + + +D LR+LR +R A E + + S+ L Sbjct: 126 LGGLKDLGCQSLRMI--SRENLQDDPLRLLRAYRQAAQLDFEIEPHTRATIRSLAPL--L 181 Query: 198 KILSSERIWSEINKLL 213 +++ER+ SE+N LL Sbjct: 182 HRVAAERVQSELNYLL 197 >gi|148926957|ref|ZP_01810634.1| putative RNA nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845041|gb|EDK22138.1| putative RNA nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8486] Length = 372 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 41/265 (15%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYK 69 ++ DL I L ++ +VGG+VRD + L + D DI I P +I K Sbjct: 10 NNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKL--- 66 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA- 126 + +G + + K +D+ R++ I+ G +V D K + RRDFTIN+ Sbjct: 67 ---GAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSM 123 Query: 127 ---LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 L+ D+ +D+ GGL DL ++ I + ED LR+LR F + + K I Sbjct: 124 MINLFNDE---FLDFYGGLKDLGVGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-IT 177 Query: 184 SDGLVASIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 S+ S+K + + I LS +RI +E+ K K+P + + Y +QE+ Sbjct: 178 SE----SLKLMQSMDITDLSKDRINAELYKFF--KSPRLDVGYRY-----------LQEL 220 Query: 242 SLDQLSQVIEAEQVFE-WKIDSLLR 265 L++ Q+ E +F+ + +LLR Sbjct: 221 DLEK--QIFGFESIFKSLEFQNLLR 243 >gi|57237634|ref|YP_178882.1| polyA polymerase family protein [Campylobacter jejuni RM1221] gi|57166438|gb|AAW35217.1| polyA polymerase family protein [Campylobacter jejuni RM1221] Length = 343 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 41/245 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD + L + D DI I P +I K + +G + + K + Sbjct: 1 MVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKL------GAQGFGKSFFVYKFKNY 54 Query: 90 DITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLN 143 D+ R++ I+ G +V D K + RRDFTIN+ L+ D+ +D+ GGL Sbjct: 55 DLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDE---FLDFYGGLK 111 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LS 201 DL ++ I + ED LR+LR F + + K I S+ S+K + + I LS Sbjct: 112 DLEAGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-ITSE----SLKLMQSMDITDLS 164 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE-WKI 260 +RI +E+ K K+P + + Y +QE+ L++ QV E VF+ + Sbjct: 165 KDRINAELYKFF--KSPRLDVGYRY-----------LQELGLEK--QVFGFESVFKSLEF 209 Query: 261 DSLLR 265 +LLR Sbjct: 210 QNLLR 214 >gi|319789341|ref|YP_004150974.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermovibrio ammonificans HB-1] gi|317113843|gb|ADU96333.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermovibrio ammonificans HB-1] Length = 480 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 47/256 (18%) Query: 7 HKW-FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTIL-PDRVMRIFS 64 HK+ F+ L + L G + IVGG +RD L+ ++ + +DI P R Sbjct: 6 HKFTFYHPKLEKLQECLVNG--RCYIVGGFIRDRLLRVAKEKVDIDVVCFKPQECARCIE 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRR 120 +T +KK F I ++ G ++ TR + D L+R Sbjct: 64 ET-----------------LKKKPFVIEREKAVFSFCGPDWRIDLTRVDGATVEEDLLKR 106 Query: 121 DFTINALYAD---------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 DFTINAL D +ID GGL DL+ ++ + + R D LR+LR Sbjct: 107 DFTINALAVDLRELFLPFNDDALIIDPTGGLEDLQKGLVRPVSEGALRA--DPLRVLRGV 164 Query: 172 RF-----FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 R F ++ L + +A +GLK ++ ERI E+ K L+ A+ + Sbjct: 165 RIKNELDFTYH------PSFLKLAREAAEGLKSVAPERIKEELVKCLKGGFFALALRELD 218 Query: 227 NGGIFKEIFLDVQEIS 242 G +F ++Q I Sbjct: 219 EIGALFPVFPELQGIE 234 >gi|186680817|ref|YP_001864013.1| polynucleotide adenylyltransferase region [Nostoc punctiforme PCC 73102] gi|186463269|gb|ACC79070.1| Polynucleotide adenylyltransferase region [Nostoc punctiforme PCC 73102] Length = 898 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 32/175 (18%) Query: 31 IVGGAVRDSLM-----NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 +VGGAVRD L+ +L ++DID+ A L + +++ R ++ Sbjct: 485 LVGGAVRDLLLAKTAGSLMIKDIDLVVDGFHKSADVGAGVELAKALQQLYPAARLEI--- 541 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA- 126 ++ T ++ K + DI T R++ V + D RRDFTINA Sbjct: 542 HGAFQTAALLWHKDPELDSLWVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINAI 601 Query: 127 ---LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 L + + G+++D+ GGL DL+ + I+ + + +ED RI R RF +G Sbjct: 602 ALRLTSPRSGELLDFFGGLLDLQAKQIRVL--YANSFIEDPTRIYRGVRFAVRFG 654 >gi|225390411|ref|ZP_03760135.1| hypothetical protein CLOSTASPAR_04164 [Clostridium asparagiforme DSM 15981] gi|225043529|gb|EEG53775.1| hypothetical protein CLOSTASPAR_04164 [Clostridium asparagiforme DSM 15981] Length = 276 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 5/188 (2%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++C+ G VRD L+ + +I ++ LP + +F+ + I + G + + R Sbjct: 30 RACLAGDCVRDWLLGRIPEVWEILSSALPGEIAGLFAGAGMEKISINAQDGAVGLRNRHY 89 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 +I +L R + F + + RRDFT+NA+ + +D G DL N Sbjct: 90 SCEIISLSGG----SREGERDFMGCLEEELSRRDFTVNAIAYSLKDGFVDPFLGRADLEN 145 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 I +GD + + ILR R A G + D+ L A+I+ ++ L + ++ + Sbjct: 146 GIICCVGDPNRYFAGNGPAILRAVRTAALLGFRP-DARLLQAAIEHRETLAAVPADYVGG 204 Query: 208 EINKLLEA 215 E+ ++ Sbjct: 205 ELRQIFSG 212 >gi|319761322|ref|YP_004125259.1| polynucleotide adenylyltransferase region protein [Alicycliphilus denitrificans BC] gi|317115883|gb|ADU98371.1| Polynucleotide adenylyltransferase region protein [Alicycliphilus denitrificans BC] Length = 415 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 41/280 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ V D D + P D V R F +P + + + + Sbjct: 5 MVGGAVRDRLLGRPVNDHDWVVVGARPEDMVARGF-------VPVGRDFPVF--LHPETH 55 Query: 89 FDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ----QGKVIDYVG 140 + R++ + Y V + D RRD TINA+ A + D G Sbjct: 56 EEYALARTERKSGRGYRGFVVQASPDVTLEEDLSRRDLTINAIAASADWIGADGLFDPYG 115 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL R ++ + DA ED +RILR RF A + + + + L+ + Sbjct: 116 GARDLERRVLRHVTDA---FREDPVRILRVARFAARFTDFTVAPETMALMREMVQAGEAD 172 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L +ER+W E+++ L + P + G + +V+ + + Q ++ Sbjct: 173 HLVAERVWQELSRGLMEEKPSRMFDVLRACGALAVVLPEVERLWGVPQRAE-------HH 225 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 ++D+ + ++ +L MA + S P +R+ ++ Sbjct: 226 PEVDTGVHLMM---------VLDMAARLSAPLAVRFACLT 256 >gi|322420279|ref|YP_004199502.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter sp. M18] gi|320126666|gb|ADW14226.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter sp. M18] Length = 401 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-- 88 +VGG VRD L+ + QD+D+A + + + ++++ S S I K++ Sbjct: 22 LVGGMVRDILLGVRCQDVDLAAAV----PVSELTSLGFRLV-ESKSTPNIYFRFHKEFGK 76 Query: 89 FDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++T L S +++ D D RRDFTINA+ +G + D + G DL Sbjct: 77 LEVTWLPSLEVLPD--------------DLSRRDFTINAMAMSLEGGLNDSLNGRGDLDR 122 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 R ++ + +D LRILR FRF + ++ ++ S L+ + ER Sbjct: 123 RVLRCCSPTS--LNDDPLRILRAFRFECEGWRLDAQAEAILRSRDWTDDLQRIPVERFSQ 180 Query: 208 EINKLLEAKNP 218 E+ K + +P Sbjct: 181 EMLKAIAKDDP 191 >gi|62947238|gb|AAY22616.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947244|gb|AAY22619.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947246|gb|AAY22620.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947248|gb|AAY22621.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947250|gb|AAY22622.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947252|gb|AAY22623.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] gi|62947274|gb|AAY22634.1| tRNA nucleotidyltransferase [Saccharomyces cerevisiae] Length = 263 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 30/172 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSI------ 75 I GG VRD L+ D+DIA T L + + + ++K Y P +I Sbjct: 65 ITGGWVRDKLLGQGSHDLDIAINVMSGEQFATGLNEYLQQHYAK--YGAKPHNIHKIDKN 122 Query: 76 -------SYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINAL 127 T K+ + D LRS+ I R KV F + D+LRRD T+NAL Sbjct: 123 PEKSKHLETATTKLFGVE--VDFVNLRSEKYIELSRIPKVCFGTP-EEDALRRDATLNAL 179 Query: 128 YAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 + + +G+V D+ GL DL++ ++ A L+D LR+LR RF + + Sbjct: 180 FYNIHKGEVEDFTKRGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRF 231 >gi|289432302|ref|YP_003462175.1| polynucleotide adenylyltransferase region [Dehalococcoides sp. GT] gi|288946022|gb|ADC73719.1| Polynucleotide adenylyltransferase region [Dehalococcoides sp. GT] Length = 418 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 15/210 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMR----IFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L+N + +D D+ +L ++ + YK + + Sbjct: 38 LVGGLVRDFLLNKTPKDADL---VLAANAIKFGQGLLEGFNYKAT-LHPRFNNLSADING 93 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGL 142 DI+T R++ D V D K D RRDF INA L G ++D GL Sbjct: 94 FKLDISTARNEFYPDPGKLPEVLEGDIKTDLFRRDFKINAMALSLSPQDFGCLVDPYNGL 153 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ + + R +D RI R R+ G +I S+ L + + + ++ + Sbjct: 154 TDLKQHKLSVLHPKSFR--DDPSRIWRALRYSERLG-FDISSETLTLLQRDAQLIPLIGA 210 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +R+ E+ + + P N ++ G+ K Sbjct: 211 DRLRYEMECIFKEAKPENILLKAEETGVLK 240 >gi|119512844|ref|ZP_01631911.1| polyA polymerase [Nodularia spumigena CCY9414] gi|119462517|gb|EAW43487.1| polyA polymerase [Nodularia spumigena CCY9414] Length = 470 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 33/176 (18%) Query: 31 IVGGAVRDSLM------NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIP 72 +VGGAVRD L+ +L + DID+ A L + I+ R ++ Sbjct: 56 LVGGAVRDLLLAESAAGSLMITDIDLVVDGFHQAADVGAGVELAKALQEIYPGARLEI-- 113 Query: 73 TSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ T ++ K + DI T R++ V + D RRDF+INA Sbjct: 114 -HGAFQTAALLWHKDPELDSLWMDIATARTEFYPYPAANPEVEASSIRQDLYRRDFSINA 172 Query: 127 LY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 L + + G+++D+ GGL DL+ + I+ + + +ED RI R RF +G Sbjct: 173 LALRLTSPRSGELLDFFGGLIDLQAKQIRVLHP--NSFIEDPTRIYRAVRFAVRFG 226 >gi|297813035|ref|XP_002874401.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320238|gb|EFH50660.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 243 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVG-GLNDLRN 147 + L+S+ T+ + K ++ RRD TIN+L Y G V D G+ DL++ Sbjct: 71 EFVNLKSEEYTENSRIPTMKFGTAKENAYRRDLTINSLFYKINTGLVEDLTDRGIKDLKS 130 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILSSER 204 I A L+D LR++R RF A +G ++ ++ +K G KI S E+ Sbjct: 131 GKIVRPLPARVTFLDDPLRVIRAIRFGARFGFTLDEELNEAASSEEVKVALGGKI-SREQ 189 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I +EI ++ P++AI +Y+ +F +F Sbjct: 190 IGNEIESMISGSEPVSAITCLYDLKLFGVVF 220 >gi|254432179|ref|ZP_05045882.1| tRNA nucleotidyltransferase/poly(A) polymerase [Cyanobium sp. PCC 7001] gi|197626632|gb|EDY39191.1| tRNA nucleotidyltransferase/poly(A) polymerase [Cyanobium sp. PCC 7001] Length = 416 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 22/169 (13%) Query: 28 KSCIVGGAVRDSLMNL-------SVQDID-IATTILPDRVMRI---FSKTRYKVIPTSIS 76 + +VGGAVRD L++ V D+D +A D V R+ + + Sbjct: 27 RVALVGGAVRDLLLHRVHNDPWRGVPDLDLVAEGPAIDLVRRLEALLPPGALRAAQEHGA 86 Query: 77 YGTIKIICRKK----YFDITTLRSDLIT-DGRYAKVVFTRDWKADSL-RRDFTINALYAD 130 YGT+++ R + D+ T R + G KVV AD L RRDF+INA+ D Sbjct: 87 YGTVEVELRLEGQTVLLDVATARCETYPQPGENPKVVPGL--LADDLARRDFSINAIALD 144 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 G+++D GG DL+ R ++ + H + +D R++R R+ A G Sbjct: 145 LASGELLDPHGGQADLQRRQLRLLHP--HSLHDDPSRLVRGARYAARLG 191 >gi|330823197|ref|YP_004386500.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alicycliphilus denitrificans K601] gi|329308569|gb|AEB82984.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alicycliphilus denitrificans K601] Length = 415 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 114/280 (40%), Gaps = 41/280 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ V D D + P D V R F +P + + + + Sbjct: 5 MVGGAVRDRLLGRPVNDHDWVVVGARPEDMVARGF-------VPVGRDFPVF--LHPETH 55 Query: 89 FDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ----QGKVIDYVG 140 + R++ + Y V + D RRD TINA+ A + D G Sbjct: 56 EEYALARTERKSGRGYRGFVVQASPDVTLEEDLSRRDLTINAIAASADWIGAEGLFDPYG 115 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL R ++ + DA ED +RILR RF A + + + + L+ + Sbjct: 116 GARDLERRVLRHVTDA---FREDPVRILRVARFAARFTDFTVAPETMALMREMVQAGEAN 172 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L +ER+W E+++ L + P + G + +V+ + + Q + Sbjct: 173 HLVAERVWQELSRGLMEEKPSRMFDVLRACGALAVVLPEVERLWGVPQRPE-------HH 225 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 ++D+ + ++ +L MA + S P +R+ ++ Sbjct: 226 PEVDTGVHLMM---------VLDMAARLSAPLAVRFACLT 256 >gi|297808367|ref|XP_002872067.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317904|gb|EFH48326.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 533 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 20/172 (11%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-----RYKVIPTS 74 L +KG D +VGG VRD ++ + +D DI T+ V++ F + R+ + Sbjct: 93 GLKSKGHDVY-LVGGCVRDLILKRTPKDFDILTSAELREVVQTFPRCEIVGRRFPICHVH 151 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRY-AKVVFTRDWKADSLR------RDFTINAL 127 I +++ +T + + R +K D D +R RDFTIN L Sbjct: 152 IGDDLVEVS------SFSTSAQNYPRNTRTESKESSGSDGDEDCIRLNNCLQRDFTINGL 205 Query: 128 YADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D KV+ DY+GG+ D+R ++ + A +D RILR R A G Sbjct: 206 MFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFQQDCARILRAIRIAARLG 257 >gi|325916461|ref|ZP_08178732.1| poly(A) polymerase [Xanthomonas vesicatoria ATCC 35937] gi|325537319|gb|EGD09044.1| poly(A) polymerase [Xanthomonas vesicatoria ATCC 35937] Length = 351 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 116 DSLRRDFTINALY-ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY A + V DY GG D++ + +K IGD R ED +R+LR R Sbjct: 43 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQAKLMKLIGDPELRYQEDPVRMLRAVRLA 102 Query: 175 AHYGEKNID-SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 A N + G I G L + R++ EI KL + + + + + G+ Sbjct: 103 AKL---NFEIEAGSAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLG 159 Query: 233 EIF 235 +F Sbjct: 160 ALF 162 >gi|332704240|ref|ZP_08424328.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfovibrio africanus str. Walvis Bay] gi|332554389|gb|EGJ51433.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfovibrio africanus str. Walvis Bay] Length = 386 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 25/211 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ D DI +F +R + + K + R Sbjct: 5 LVGGAVRDLLLGRPRSDEDIL----------VFGMSREEF---RQRFPMAKEVGR----- 46 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 TT + GR + D AD RD TINAL D+QG++ + L DL R + Sbjct: 47 -TT--PSFVLKGREYMLPRGPDIDADLAARDLTINALALDEQGQLYAHPRALEDLHYRIL 103 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERIWSE 208 + + ++ D +R+LR RF A E + L + +A K L ER+ E Sbjct: 104 RPA--SPDSLIADPVRVLRAARFSAELPEFTASGELLQSMREAAQKADYAELPRERVSKE 161 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I K + A P + + G F +++ Sbjct: 162 ILKAMGAPQPSRFVGLLAQTGALAPWFAEIE 192 >gi|121608440|ref|YP_996247.1| metal dependent phosphohydrolase [Verminephrobacter eiseniae EF01-2] gi|166233889|sp|A1WHX2|CCA_VEREI RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|121553080|gb|ABM57229.1| metal dependent phosphohydrolase [Verminephrobacter eiseniae EF01-2] Length = 413 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/279 (24%), Positives = 115/279 (41%), Gaps = 39/279 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKY 88 +VGGAVRD L+ V D D + P++ MR +P + + R++Y Sbjct: 5 MVGGAVRDRLLGRPVHDRDWVVVGATPEQ-MRA-----QGYLPVGRDFPVFLHPATREEY 58 Query: 89 FDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALY----ADQQGKVIDYVGG 141 T R G VV + + D RRD TINA+ A G +ID G Sbjct: 59 ALARTERKS--GRGYRGFVVHSAPEVTLQEDLSRRDLTINAIATSADASGAGCLIDPHHG 116 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKI 199 D+ R ++ + A ED +RILR RF A + + + L + + A Sbjct: 117 ARDIAARVLRHVSTA---FREDPVRILRVARFAARLPDFTVAPETLQLMREMVAHGETDH 173 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEW 258 L +ER+W E+ + L A+ P + G + + +V+ + + Q ++ Sbjct: 174 LVAERVWQELARGLMAEKPSRMFEVLRACGALERLLPEVERLWGVPQSAE-------HHP 226 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +ID+ ++ +L MA + P +R+ ++ Sbjct: 227 EIDTGAHLLL---------VLDMAARLQAPLAVRFACLA 256 >gi|34540583|ref|NP_905062.1| polyA polymerase family protein [Porphyromonas gingivalis W83] gi|188994688|ref|YP_001928940.1| tRNA nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277] gi|34396896|gb|AAQ65961.1| polyA polymerase family protein [Porphyromonas gingivalis W83] gi|188594368|dbj|BAG33343.1| tRNA nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 483 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 7/215 (3%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICR 85 ++ +VGG VRD +N +DIDI + + +K + S+ ++GT ++ Sbjct: 29 ETYVVGGYVRDIFLNRPSKDIDIVAVGRGIDLAKAVAKKLGRKAHLSVFANFGTAQVKHG 88 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + R + +V + D RRDFTINAL +D+ G ++D G Sbjct: 89 DLEIEFVGARKESYRHDSRKPIVEDGTLEDDLRRRDFTINALAVCLNSDRFGDLVDMFDG 148 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLVASIKAKKGLKIL 200 L D+ + + D +D LR++R RF + G + D A + + + Sbjct: 149 LCDMDDMLLCTPLDPDITFSDDPLRMMRAIRFASQLPGFTILPRDFEAIQRNAHRIKEAV 208 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 S+ER+ E+NK++ + P + G+ + +F Sbjct: 209 SAERVIEELNKIMLSPRPSIGLSLFEETGLMEYVF 243 >gi|270612317|ref|ZP_06221707.1| poly(A) polymerase [Haemophilus influenzae HK1212] gi|270318019|gb|EFA29298.1| poly(A) polymerase [Haemophilus influenzae HK1212] Length = 157 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 27/151 (17%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + + Sbjct: 11 NALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQR---QCRLV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-----------------LITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R++ L+ D Y + + D Sbjct: 68 GRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQD 121 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLR 146 ++RRDFT+NALY + Q + DY G+ DL+ Sbjct: 122 AVRRDFTVNALYYNPQDNTLRDYFEGIKDLK 152 >gi|332529564|ref|ZP_08405520.1| metal dependent phosphohydrolase [Hylemonella gracilis ATCC 19624] gi|332040914|gb|EGI77284.1| metal dependent phosphohydrolase [Hylemonella gracilis ATCC 19624] Length = 426 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 37/281 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L V+D D + P+ + K P + T R+++ Sbjct: 5 MVGGAVRDALLGLPVKDRDWVVVGATPEAMAAQGFTPVGKDFPVFLHPET-----REEHA 59 Query: 90 DITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQ----------GKVIDY 138 T R G + D RRD T+NAL ++ +V+D Sbjct: 60 LARTERKTARGYKGFAVHAAPDVTLEQDLARRDLTLNALAVAREHCRPDGGFDPAQVVDP 119 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKG 196 G DL R ++ + A ED +RILR RF A + + + + L+ + Sbjct: 120 YQGRRDLEQRILRHVTPA---FREDPVRILRVARFSARFTDFQVAPETLALMGEMVEDGE 176 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 + L ER+W E+++ L P + + G K + +V D+L V + + Sbjct: 177 VDHLVPERVWQELSRGLMEARPSRMLEVLRVCGALKRLLPEV-----DRLWGVPQPAE-H 230 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 ++D+ + ++ +L +A + + P +RY + Sbjct: 231 HPEVDTGVHLML---------VLDLAAELNAPLPVRYACLG 262 >gi|284929226|ref|YP_003421748.1| tRNA nucleotidyltransferase/poly(A) polymerase [cyanobacterium UCYN-A] gi|284809670|gb|ADB95367.1| tRNA nucleotidyltransferase/poly(A) polymerase [cyanobacterium UCYN-A] Length = 421 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 29/230 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGGAVRD L+N S QD ILP+ V +I K I + + I R Sbjct: 24 KAYLVGGAVRDILLN-SEQDYIDLDIILPNFVTKIAKKITLNYHVNFIVLDSKRSIVR-- 80 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLR 146 T I + +D K +RDFTINA+ Y+ + +++D + GL DL+ Sbjct: 81 ----ITFNKGTIDLAKQNGNNVHKDLK----QRDFTINAIAYSFHRQQLVDPLKGLRDLQ 132 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS---- 202 + I+ I + + +D LR++R +R + + + + +K +SS Sbjct: 133 IKNIRMIHI--NNLQDDPLRLIRAYRQASQL--------NFIIETRTRHAIKEVSSCISQ 182 Query: 203 ---ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ERI +E+ LL++ N + + M G+ K I + + + L QV Sbjct: 183 VAVERIQTELGYLLQSFNGSDWLAEMGKDGLLKVILPGLNQNNFYYLKQV 232 >gi|237735251|ref|ZP_04565732.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229380996|gb|EEO31087.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 417 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 6/110 (5%) Query: 112 DWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 D K + RRD TINAL Y + GK+ D+ G D+ RT++ + + +ED LR+LR Sbjct: 79 DLKVAASRRDLTINALMYEIKTGKIYDFFHGQEDIEKRTLRMVSET--TFIEDPLRVLRT 136 Query: 171 FRFFAHYGEKNIDSDG--LVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + FA + I++ + + K L LS ER++ E +KLL ++ P Sbjct: 137 AQ-FASRLDFCIETATKLMCKKMVQNKSLDKLSKERVFQEYSKLLLSQQP 185 >gi|220905715|ref|YP_002481026.1| polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7425] gi|219862326|gb|ACL42665.1| Polynucleotide adenylyltransferase region [Cyanothece sp. PCC 7425] Length = 424 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 37/234 (15%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD+L +D+ +LP + + SK I R Sbjct: 23 LVGGGVRDALRKRPSSYLDL-DFVLPAHPVEVASK-----------------IARHYKAG 64 Query: 91 ITTLRSDLITDGRYAKVVF---TRDWK---ADSL-----RRDFTINAL-YADQQGKVIDY 138 L ++ + A++VF T D+ DSL RRDFT+NA+ Y G ++D Sbjct: 65 FVLLDAE----RQIARIVFEQATADFALQVGDSLEEDLHRRDFTVNAIAYNPHTGAILDP 120 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 + G DL ++ I A + D LR+LR +R A + +D D V + LK Sbjct: 121 LQGCMDLHQGILRMI--APENLAADPLRLLRAYRQAAQL-DFELDPDTQVEIRRLSPHLK 177 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 +++ER+ E++ LL + + G+F++ L L+++ EA Sbjct: 178 EVAAERVRGELSYLLSTPRGTPFLKAAWMDGLFQDWLPATTATDLAYLARMDEA 231 >gi|325282687|ref|YP_004255228.1| Polynucleotide adenylyltransferase region [Deinococcus proteolyticus MRP] gi|324314496|gb|ADY25611.1| Polynucleotide adenylyltransferase region [Deinococcus proteolyticus MRP] Length = 384 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 47/236 (19%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQ--DIDI------------------ATTILPDRVMRIFS 64 G+ +VGGAVRD+L+ S+ D+DI A T LP F Sbjct: 32 GQGTLALVGGAVRDALLGASLHSPDLDIVLDTSGGLTVGELAARYSARTGLPHLFHPQFQ 91 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +P S I+ R++ + + R +T G A+ D RRDF + Sbjct: 92 NAAL-TLPDGRSADLIR--ARRERYPVPGERPT-VTTGTLAE---------DLARRDFGL 138 Query: 125 NALY---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 NAL AD +++D VGGL+DL RT++ + H + ED R++R R A Sbjct: 139 NALALRLADPP-ELLDVVGGLDDLHARTLRPLHA--HSLHEDASRLIRGARLAA-----R 190 Query: 182 IDSDGLVASIK-AKKGLKILS-SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +D ++ L++ + R+W+E+ L +P + M G E+ Sbjct: 191 LDLHAHPELLRQVPDALQMAERTPRLWAELGLALHEPHPTK-VARMLTGWGAGEVL 245 >gi|159029735|emb|CAO87813.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 899 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 44/223 (19%) Query: 31 IVGGAVRDSLM-----NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 +VGGAVRD L+ +L +QDID+ A L + + I+ R + Sbjct: 484 LVGGAVRDLLLATERDSLLLQDIDLVVDGCHRAAGVGAGVELANCLQEIYPGARLSI--- 540 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T ++ K + DI T R++ V + D RRDFTINAL Sbjct: 541 HGEFQTAALLWHKDERFGSLWVDIATARTEFYPYPASNPQVEASSIRQDLYRRDFTINAL 600 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA-------- 175 + ++G+++D+ GG+ DLR + I+ + + +ED RI R RF Sbjct: 601 AIRLTSPKEGELLDFFGGMLDLRAQHIRVL--HANSFIEDPTRIYRAVRFATRLRFVIEP 658 Query: 176 ---HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 +Y I+S S + + L S R+ +E+N +LEA Sbjct: 659 LTENYIRYAIESGVYDRSRQQNQNAPALQS-RLKAELNYILEA 700 >gi|298712997|emb|CBJ26899.1| conserved unknown protein [Ectocarpus siliculosus] Length = 719 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 8/154 (5%) Query: 88 YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG-GLND 144 + D LR++ + D R + + DS RRD TIN+L+ + G V DY G G +D Sbjct: 242 WVDFVNLRTESYVQDSRIPSINIGTPME-DSFRRDLTINSLFYNVNTGTVEDYTGKGTSD 300 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLKILS 201 LR ++ +L+D LR LR RF + G + G + +K+ S Sbjct: 301 LRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPKVHEALCMKV-S 359 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ER+ E+++++ + +PL A M I +F Sbjct: 360 RERVGCELDQMVRSASPLRAFELMEGMKILPMVF 393 >gi|295111067|emb|CBL27817.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synergistetes bacterium SGP1] Length = 445 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 34/63 (53%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D RRD +I A+ G V+D GG D+RNR I+ GD I D LRI+R RF A Sbjct: 104 DLARRDLSIEAIALRSDGGVVDPFGGRRDIRNRVIRLTGDDVELIDRDPLRIVRILRFAA 163 Query: 176 HYG 178 G Sbjct: 164 ELG 166 >gi|323703663|ref|ZP_08115305.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfotomaculum nigrificans DSM 574] gi|323531378|gb|EGB21275.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfotomaculum nigrificans DSM 574] Length = 472 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 36/202 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +VGGAVRD L L +D+D+A D R+ + R V+ +++ ++ Y Sbjct: 21 LVGGAVRDLLWGLRPRDLDLAVANGALDLARRMADRHRGTVVVLDEQRQMARVVFKQDYQ 80 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY---------------ADQQG 133 D + + I + D RDFTINA+ ADQ Sbjct: 81 LDFSPFKGAHI--------------EGDLRARDFTINAMALHLNSLCSSKNCTSPADQGW 126 Query: 134 K--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + ++D GG DL+ ++ G+ +L+D LR++R R A + +I + +V Sbjct: 127 RSFLVDPTGGKRDLQLGLLQATGN--EALLDDPLRVIRGIRLAAQF-NLSITPETVVLMR 183 Query: 192 KAKKGLKILSSERIWSEINKLL 213 + + ++ ++ ERIW E+ + L Sbjct: 184 QGARRIEQVAGERIWQELGQAL 205 >gi|257464917|ref|ZP_05629288.1| polyA polymerase [Actinobacillus minor 202] gi|257450577|gb|EEV24620.1| polyA polymerase [Actinobacillus minor 202] Length = 379 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 114 KADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDF++NA Y D + +I D+ GL DL ++ +G+ R ED +R+LR R Sbjct: 64 REDAERRDFSVNAFYYDPRHNLIYDFFNGLEDLNAGKLRLLGNPVQRYQEDPVRMLRAIR 123 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A + +D + LK++ + R++ E KLL++ L + +F+ Sbjct: 124 FMAKL-DMFLDRATADPIKEMAPLLKMIPAARLFDESLKLLQSGAGLKTYQLLREYALFE 182 Query: 233 EIF 235 +F Sbjct: 183 PLF 185 >gi|322692774|gb|EFY84664.1| putative tRNA nucleotidyltransferase [Metarhizium acridum CQMa 102] Length = 499 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 28/210 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPD----RVMRIFSKTR-----YKVIPTSIS--YGTI 80 GG VRD L+ + DID+A + + MR + T + + P I + Sbjct: 40 AGGWVRDKLLGIESHDIDVAINAMTGFDFAQRMREYCSTEKASRIHAIKPDDIGNLHNIS 99 Query: 81 KIICRKKYFDITTLR-----SDLIT--------DGRYAKVVFTRDWKADSLRRDFTINAL 127 K + K+ + +R DL+ D R V F + D+LRRD TINA Sbjct: 100 KNPDKSKHLETAMVRIFGLDLDLVNLRKETYAEDSRNPTVEFGTA-EEDALRRDATINAF 158 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSD 185 + + ++ D+ GG+ DL + ++ + +D LR+LR RF + G ++ Sbjct: 159 FYNIHTDEIEDFTGGMRDLTAKVLRTPLNPLETFKDDPLRVLRLVRFASRLGFSIEEETR 218 Query: 186 GLVASIKAKKGLKI-LSSERIWSEINKLLE 214 +++ + L++ +S ER+ +E+ K+L+ Sbjct: 219 KVMSHPEVLDALQVKISRERVGTELEKMLK 248 >gi|115450525|ref|NP_001048863.1| Os03g0131400 [Oryza sativa Japonica Group] gi|108706021|gb|ABF93816.1| polyA polymerase family protein, expressed [Oryza sativa Japonica Group] gi|113547334|dbj|BAF10777.1| Os03g0131400 [Oryza sativa Japonica Group] gi|222624145|gb|EEE58277.1| hypothetical protein OsJ_09295 [Oryza sativa Japonica Group] Length = 558 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 29/190 (15%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 I +H W +L +L + + +VGG VRD L+ + +D D+ TT ++ ++ Sbjct: 81 IPRHAW-------TVLHMLKRKGFAAYLVGGCVRDLLLKRAPKDFDVITTASLQQIKKM- 132 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK----VVFTRDWK----- 114 V I G IC+ + S T+ + K + + ++K Sbjct: 133 ------VFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEFKRYDEG 186 Query: 115 -----ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 +S++RDFTIN+L+ + K+ DYV G+ D+ + + A ED RIL Sbjct: 187 DILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKEDPARIL 246 Query: 169 RFFRFFAHYG 178 R R A G Sbjct: 247 RGLRIAARLG 256 >gi|330791394|ref|XP_003283778.1| hypothetical protein DICPUDRAFT_74768 [Dictyostelium purpureum] gi|325086277|gb|EGC39669.1| hypothetical protein DICPUDRAFT_74768 [Dictyostelium purpureum] Length = 573 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 23/212 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI----------------LPDRVMR 61 +L N+ + + + GG VRD L+N +D+ I + Sbjct: 44 VLQYHNRNDIELRVAGGWVRDKLLNYKNNKLDLDFAINNTTGVEFVEMIQKYRTEKELKT 103 Query: 62 IFSKTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 ++S+ K+ P S T+ I + LRSD + + +DSLRR Sbjct: 104 VYSEYTIKMNPEKSKHLETVSITIDDFTIEFNALRSDFYDENSRIPQIQVGTLLSDSLRR 163 Query: 121 DFTINALYADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D TINAL+ + ++ D+ G GL DL N I+ + + + ED LR R RF + Sbjct: 164 DLTINALFYNINTLMVEDHSGYGLADLENGIIRTPLEPFNTLTEDPLRAFRILRFATKFN 223 Query: 179 EKNIDSDGLVASIKAKKG--LKILSSERIWSE 208 K L IK +K +S ERI++E Sbjct: 224 FK--IEPLLYQHIKTINNNIIKKVSKERIYTE 253 >gi|166365960|ref|YP_001658233.1| hypothetical protein MAE_32190 [Microcystis aeruginosa NIES-843] gi|166088333|dbj|BAG03041.1| hypothetical protein MAE_32190 [Microcystis aeruginosa NIES-843] Length = 898 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 44/223 (19%) Query: 31 IVGGAVRDSLM-----NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 +VGGAVRD L+ L +QDID+ A L + + I+ R + Sbjct: 484 LVGGAVRDLLLAAERDTLLLQDIDLVVDGCHRAAGVGAGVELANCLREIYPGARLSI--- 540 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T ++ K + DI T R++ V + D RRDFTIN+L Sbjct: 541 HGEFQTAALLWHKDERFGSLWVDIATARTEFYPYPASNPQVEASSIRQDLYRRDFTINSL 600 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----- 178 + ++G+++D+ GG+ DLR + I+ + + +ED RI R RF G Sbjct: 601 AIRLTSPKEGELLDFFGGMLDLRAQEIRVL--HANSFIEDPTRIYRAVRFATRLGFVIEP 658 Query: 179 ------EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 I+S S + + L S R+ +E+N +LEA Sbjct: 659 LTENYIRYAIESGVYERSRQQNQNAPALQS-RLKAELNYILEA 700 >gi|310722554|ref|YP_003969377.1| hypothetical protein phiAS5_ORF0088 [Aeromonas phage phiAS5] gi|306021397|gb|ADM79931.1| hypothetical protein phiAS5_ORF0088 [Aeromonas phage phiAS5] Length = 351 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 27/197 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD +M + +D D + + +M + P + + + Sbjct: 5 LVGGAVRDMVMGVEPKDRDYVVVGATHEDMMEAGYQKVGADFPVYLDDLGQEYALARTER 64 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +D +TD +V D K RRDFT+NA+ + G V+D GG D++ Sbjct: 65 STGKGYNDFVTDFN-PRVTLEEDLK----RRDFTMNAMALNFNGVVVDPYGGQKDIKAGV 119 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHY----GEKNID------SDGLVASIKAKKGLKI 199 I + + H ED +R R RF A Y E I+ DG +A Sbjct: 120 INVVNE--HAFHEDPVRAFRACRFGARYDMRLSEMTIECIDRCIEDGRMAH--------- 168 Query: 200 LSSERIWSEINKLLEAK 216 L++ERIW E K K Sbjct: 169 LTTERIWKEYEKAFGPK 185 >gi|254374979|ref|ZP_04990459.1| hypothetical protein FTDG_01161 [Francisella novicida GA99-3548] gi|151572697|gb|EDN38351.1| hypothetical protein FTDG_01161 [Francisella novicida GA99-3548] gi|332678899|gb|AEE88028.1| tRNA nucleotidyltransferase [Francisella cf. novicida Fx1] Length = 369 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 87/203 (42%), Gaps = 34/203 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M ++ G IKI F Sbjct: 5 LVGGAVRDMLLGITPKDKDWVVVGATEDEM--------------LANGFIKIAANFPVFI 50 Query: 90 ------DITTLRSDLITDGRYA--KVVFTR--DWKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ T Y +V F++ + D RRD TIN++ DQ KV D Sbjct: 51 HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQNNKVTDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKK 195 G DL+NR ++ A +ED LR++R RF A N ++ L+ + Sbjct: 111 NGQADLQNRILRHTSIA---FIEDPLRVVRLARFKAQLSNFNFSIAQETLTLIKKLIKTG 167 Query: 196 GLKILSSERIWSEINKLLEAKNP 218 L L+ ER+ E K L NP Sbjct: 168 ELNHLTRERLHIEFVKALN--NP 188 >gi|78357126|ref|YP_388575.1| tRNA nucleotidyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219531|gb|ABB38880.1| tRNA nucleotidyltransferase, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 368 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 40/199 (20%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------RYKVIPTSISYGTIKIIC 84 +VGGAVRD L+ + ++ D +FS + R+K T+ GT I Sbjct: 10 LVGGAVRDMLLGRTPREYDY-----------VFSGSLEEFLLRHK---TARRAGTQFSIA 55 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + +R I + D RDFT+NA+ D G++ + L D Sbjct: 56 IYNGLEFAPMRGKTIHE--------------DLASRDFTVNAMALDADGRLFAHPEALRD 101 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KIL--S 201 L + H + +D +R+ R RF A +I +D L +++A+ G KI+ + Sbjct: 102 LALHRLSPASS--HALADDPVRLFRAARFTATLPGFHISAD-LKRAMRAEAGSGKIMDAA 158 Query: 202 SERIWSEINKLLEAKNPLN 220 ERI SEI+K+L + P N Sbjct: 159 PERIGSEIHKVLHSARPGN 177 >gi|283852373|ref|ZP_06369643.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfovibrio sp. FW1012B] gi|283572221|gb|EFC20211.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfovibrio sp. FW1012B] Length = 397 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 37/201 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ V D D + P+ +R + + R Sbjct: 2 KRYLVGGAVRDILLGRPVVDQDYLIVDATPEAFLRRYRRARQV----------------G 45 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQQ----GKVIDYVG 140 K F + L S A+ + R D D L RD TINA+ G++ + Sbjct: 46 KTFPVFMLGS--------AQYAWPRGDDINEDLLARDLTINAMAMGDSRQIAGRLHFHPL 97 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 L DLR+R ++ G+ + +D LR+ R RF A + + + L+A +KA +L Sbjct: 98 ALTDLRDRILRPCGEMS--MFDDPLRVYRAARFAASLPDFSPHPE-LLAQMKAVAACGVL 154 Query: 201 S---SERIWSEINKLLEAKNP 218 S +ER+ E+ K L+A P Sbjct: 155 SDIFAERVAQEVRKALDAPKP 175 >gi|224004100|ref|XP_002295701.1| hypothetical protein THAPS_263072 [Thalassiosira pseudonana CCMP1335] gi|209585733|gb|ACI64418.1| hypothetical protein THAPS_263072 [Thalassiosira pseudonana CCMP1335] Length = 477 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 25/211 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPD----RVMRIFSKTRYKVIPTSISYG-------- 78 + GG VRD L+N D+D+A + R+++ F + +P G Sbjct: 4 VAGGWVRDKLLNQHSSDVDVALDCMMGVQFARIVQSFLALQSNKLPKVGVIGANPSQSKH 63 Query: 79 --TIKIICRKKYFDITTLRSDLITDGRYA-KVVFTRDWKA---DSLRRDFTINALYAD-Q 131 T + D LR++ + + TR++ + D+LRRDFTIN+L+ + + Sbjct: 64 LETATMNIHGIDVDFVNLRAEEVYEANSRIPTSDTRNFGSPLEDALRRDFTINSLFYNIR 123 Query: 132 QGKVIDYVG-GLND-LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDG 186 K+ D+ G GL D L +R I DAH +D LR+LR RF ++ + S Sbjct: 124 TRKIEDWTGRGLVDLLEHRKIVTPVDAHETFHDDPLRVLRAIRFCVRLDFVLDEQLKSAA 183 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKN 217 + + +K+ S ER+ E+ +L K Sbjct: 184 MSKRVHHSLHVKV-SRERVGKELEGMLTGKG 213 >gi|77919244|ref|YP_357059.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter carbinolicus DSM 2380] gi|77545327|gb|ABA88889.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter carbinolicus DSM 2380] Length = 438 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 42/227 (18%) Query: 27 DKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT----------RYKVIPTSI 75 +++C +VGGAVRD + D D T P + R F++ + + + Sbjct: 27 NQACFLVGGAVRDMFLGRPCSDFDFTTPFDPTPLARAFARNLSASWFFLDQKRRQSRVVL 86 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL----YAD- 130 G + C F T+L +DL+ RDF INA+ YAD Sbjct: 87 RCGDNDVCCDFSPFRATSLTADLLL-------------------RDFRINAMALRVYADT 127 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLV 188 D + GL DLR R + + + +D LRIL+ R H N D L Sbjct: 128 SPADFFDPLSGLCDLRRRHLSIC--SGTVLQQDPLRILKGLRHCKVLHLTPGN---DTLQ 182 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +A L +++ER+ E+ LL+ + A+ + + G +F Sbjct: 183 KMREAAPELPGVAAERVKRELGLLLDDEAVTAALESLLDSGAAASVF 229 >gi|323301098|gb|ADX35891.1| MIP28916p [Drosophila melanogaster] Length = 230 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 18/225 (8%) Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 N D L A + KGL +S ERIWSE+ K++ + M+ +F+ I L +E Sbjct: 1 NHDKATLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIGLP-KE 59 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFF 299 LD+ ++ +A FE +L ++ + + M K+ L R++ F+ Sbjct: 60 PYLDEFDRLCKALDQFEKPHQPILYLAGML--HSVEDAMEMHKRLKLSARDLARFITQER 117 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 +Q T K Y + + +L L Y+ L++ + + W Sbjct: 118 EKVGSQYTTLRDYQKLCLQKYIQRDFVEQL-----LKYSG--------KLELYNQLKSWV 164 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 KP FP+ G+ + + G+ G ++G ++ K W +S FQL+ +DL Sbjct: 165 KPDFPIRGNALAQRGLN-GMRLGLVMDELKLLWADSDFQLTHDDL 208 >gi|198282536|ref|YP_002218857.1| polynucleotide adenylyltransferase region [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667162|ref|YP_002424726.1| polyA polymerase family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247057|gb|ACH82650.1| Polynucleotide adenylyltransferase region [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519375|gb|ACK79961.1| polyA polymerase family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 456 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 14/167 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + L +L+ L + + +VGG RD+L+ ++ D D + I + ++ Sbjct: 7 AALTPVLTALQRAGAEILVVGGTPRDALLGMAAHDWD----------LEIHGLSEARLGE 56 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 + +G ++ R + + L + ++ W+ + RRDF++NAL D + Sbjct: 57 CLMPFGAHRVGGRCAVWVVAGAEIAL-PQAQGGRIDPHLPWEIAAQRRDFSVNALIWDWR 115 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +++D+ GG++DL R ++ + + ED LR+ R R G Sbjct: 116 TQRLLDHFGGVDDLHARRLRMV--SADSFGEDPLRVFRAARLAGQLG 160 >gi|75907929|ref|YP_322225.1| RecJ-like protein phosphoesterase [Anabaena variabilis ATCC 29413] gi|75701654|gb|ABA21330.1| Phosphoesterase, RecJ-like protein [Anabaena variabilis ATCC 29413] Length = 904 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 33/176 (18%) Query: 31 IVGGAVRDSLM------NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIP 72 +VGGAVRD L+ L + DID+ A L + I+ R ++ Sbjct: 490 LVGGAVRDLLLAEAAAGTLMITDIDLVVDGFHKSADVGAGVELAKALQEIYPAARLEI-- 547 Query: 73 TSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ T ++ K + DI T R++ V + D RRDFTINA Sbjct: 548 -HGAFQTAALLWHKDPELDSLWVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINA 606 Query: 127 LY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 L + + G ++D+ GGL DL+ + I+ + + +ED RI R RF +G Sbjct: 607 LALRLTSPRAGDLLDFFGGLLDLKAKQIRVL--HANSFIEDPTRIYRGVRFAVRFG 660 >gi|225850507|ref|YP_002730741.1| poly A polymerase [Persephonella marina EX-H1] gi|225645716|gb|ACO03902.1| poly A polymerase [Persephonella marina EX-H1] Length = 865 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT---RYKVIPTSISYGTIKIIC 84 ++ +VGG VRD +M DIDI +++ ++K RY ++ + + Sbjct: 476 RAYLVGGIVRDIVMKRKNLDIDIIVEGDAIELVKKYAKENNYRYYYFEEFMT-AQVTLPS 534 Query: 85 RKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINAL----YADQQGKVIDYV 139 K D T R ++ G Y KV K D RRDFTIN L D G +ID+ Sbjct: 535 GLK-IDFATARKEIYEYPGAYPKVR-KASIKEDLYRRDFTINTLAIEITEDNFGTLIDFF 592 Query: 140 GGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG 178 GL D++++ I+ + H++ +ED +RILR RF +G Sbjct: 593 NGLRDIKDKVIRIL----HQLSFIEDPVRILRAVRFAGRFG 629 >gi|17231481|ref|NP_488029.1| polyA polymerase [Nostoc sp. PCC 7120] gi|17133124|dbj|BAB75688.1| polyA polymerase [Nostoc sp. PCC 7120] Length = 904 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 33/176 (18%) Query: 31 IVGGAVRDSLM------NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIP 72 +VGGAVRD L+ L + DID+ A L + I+ R ++ Sbjct: 490 LVGGAVRDLLLAEAAAGTLMITDIDLVVDGFHKSADVGAGVELAKALQEIYPAARLEI-- 547 Query: 73 TSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ T ++ K + DI T R++ V + D RRDFTINA Sbjct: 548 -HGAFQTAALLWHKDPDLDSLWVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINA 606 Query: 127 LY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 L + + G ++D+ GGL DL+ + I+ + + +ED RI R RF +G Sbjct: 607 LALRLTSPRAGDLLDFFGGLLDLKAKQIRVL--HANSFIEDPTRIYRGVRFAVRFG 660 >gi|86152051|ref|ZP_01070263.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86153538|ref|ZP_01071742.1| CCA-adding enzyme [Campylobacter jejuni subsp. jejuni HB93-13] gi|85840836|gb|EAQ58086.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85843264|gb|EAQ60475.1| CCA-adding enzyme [Campylobacter jejuni subsp. jejuni HB93-13] Length = 345 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 41/245 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD + L + D DI I P +I K + +G + + K + Sbjct: 3 LVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKL------GAQGFGKSFFVYKFKNY 56 Query: 90 DITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLN 143 D+ R++ I+ G +V D K + RRDFTIN+ L+ D+ +D+ GGL Sbjct: 57 DLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDE---FLDFYGGLK 113 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LS 201 DL ++ I + ED LR+LR F + + K I S+ S+K + + I LS Sbjct: 114 DLGAGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-ITSE----SLKLMQSMDITDLS 166 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF-EWKI 260 +RI +E+ K K+P + + Y +QE+ L++ Q+ E VF + Sbjct: 167 KDRINAELCKFF--KSPRLDVGYRY-----------LQELGLEK--QIFGFESVFMSLEF 211 Query: 261 DSLLR 265 +LLR Sbjct: 212 QNLLR 216 >gi|270707707|ref|ZP_06223107.1| poly(A) polymerase [Haemophilus influenzae HK1212] gi|270315767|gb|EFA27900.1| poly(A) polymerase [Haemophilus influenzae HK1212] Length = 153 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 27/144 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ IVGG +RD L+ +D D+AT P+++ IF + V + I+ + Sbjct: 10 EAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLV---GRRFRLAHIMFGRD 66 Query: 88 YFDITTLRSD-----------------LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++ T R++ L+ D Y + + D++RRDFT+NALY + Sbjct: 67 IIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTI------EQDAVRRDFTVNALYYN 120 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFI 153 Q + DY G+ DL+ ++ I Sbjct: 121 PQDNTLRDYFEGIKDLKAGKLRLI 144 >gi|163784000|ref|ZP_02178963.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1] gi|159880735|gb|EDP74276.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1] Length = 374 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 12/158 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K +VGG VRD +M DIDI ++ + F+K + + T ++ Sbjct: 33 KVYLVGGIVRDIIMQRENLDIDIIVEGDAIKLAKEFAKKKKGKFNKFEEFMTAQVKVGNI 92 Query: 88 YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGL 142 FD T R ++ G Y KV + K D RRDFTIN L D G +IDY L Sbjct: 93 KFDFATARKEIYEYPGAYPKVQ-KSNLKEDLYRRDFTINTLAINLTQDNFGILIDYFNSL 151 Query: 143 NDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG 178 D++N I+ + H++ +ED +RI R RF + Sbjct: 152 QDIKNGKIRIL----HQLSFIEDPIRIFRALRFSGRFN 185 >gi|303326747|ref|ZP_07357189.1| tRNA nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3] gi|302862735|gb|EFL85667.1| tRNA nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3] Length = 368 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 33/213 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI---PTSISYGTIKIICRKKY 88 +GGAVRD L+ ++D A FS + P + G +C + Sbjct: 1 MGGAVRDLLLGRVPVELDFA-----------FSGDMADFLAAHPDARPVGKSVRVCLWRG 49 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 + LR + KAD L RD T+NA+ D +G + + L DLR R Sbjct: 50 RECMPLRGGSL--------------KADLLARDLTVNAMALDSRGLLRFHPEALADLRAR 95 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSSERIW 206 ++ + +D R+ R RF A + + +D D ++A L + +ER+ Sbjct: 96 RLRPASSTA--LADDPARVFRLARFAAQWPDWQVD-DAAYGQMRALPAATLAAIPAERVC 152 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 E+ K L A P + G F +++ Sbjct: 153 RELRKALAAPAPARFFEILAKGNALSPWFPELE 185 >gi|86150208|ref|ZP_01068435.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597551|ref|ZP_01100785.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|85839324|gb|EAQ56586.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190143|gb|EAQ94118.1| polyA polymerase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|315928282|gb|EFV07598.1| poly A polymerase head domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929249|gb|EFV08466.1| poly A polymerase head domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 343 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 41/245 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD + L + D DI I P +I K + +G + + K + Sbjct: 1 MVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKL------GAQGFGKSFFVYKFKNY 54 Query: 90 DITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLN 143 D+ R++ I+ G +V D K + RRDFTIN+ L+ D+ +D+ GGL Sbjct: 55 DLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDE---FLDFYGGLK 111 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LS 201 DL ++ I + ED LR+LR F + + K I S+ S+K + + I LS Sbjct: 112 DLGVGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-ITSE----SLKLMQSMDITDLS 164 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE-WKI 260 +RI +E+ K K+P + + Y +QE+ L++ QV E VF+ + Sbjct: 165 KDRINAELCKFF--KSPRLDVGYRY-----------LQELGLEK--QVFGFESVFKSSEF 209 Query: 261 DSLLR 265 +LLR Sbjct: 210 QNLLR 214 >gi|332527837|ref|ZP_08403875.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2] gi|332112232|gb|EGJ12208.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2] Length = 408 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 19/194 (9%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD+L+ L D D + P ++ + + P + T + Sbjct: 7 VVGGAVRDALLGLPASDRDWVVVGSTPQELVAAGFRPVGRDFPVFLHPETGE-------- 58 Query: 90 DITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ R++ + Y D + D LRRD TINA+ + G ++D GG DL Sbjct: 59 EVALARTERKSAPGYRGFTIHADPSVTLEDDLLRRDLTINAIARAEDGTLVDPHGGQRDL 118 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKILSSE 203 + R + + DA +ED +R+LR R A + + + +++ L+ + A + L E Sbjct: 119 QARIFRHVSDA---FVEDPVRLLRLARLAARFTDFTVAPETEALLERLVADGEVDALVPE 175 Query: 204 RIWSEINK-LLEAK 216 R+W E+++ L+EA+ Sbjct: 176 RVWQELSRGLMEAR 189 >gi|301113854|ref|XP_002998697.1| tRNA nucleotidyltransferase, putative [Phytophthora infestans T30-4] gi|262111998|gb|EEY70050.1| tRNA nucleotidyltransferase, putative [Phytophthora infestans T30-4] Length = 486 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 27/231 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDR----VMRIFSKTRYKVIPT------------S 74 + GG VRD L+ D+DI + R ++ F + + T Sbjct: 38 VAGGWVRDKLLGRDSDDVDIVLDRMTGRAFADLVNAFETAQGRTARTVGVIKANPDQSKH 97 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + T++I + D LR++ D R V + D+ RRDFTIN+L+ + Sbjct: 98 LETATMQIGEDMGWVDFVNLRAETYASEDNRIPTVEIGTP-QQDAERRDFTINSLFYNLA 156 Query: 133 GK-VIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGL 187 K V DY G G+ DLR+ ++ + L+D LR+LR RF + + E ++ + Sbjct: 157 TKQVEDYTGRGVEDLRHGRLRTPLEPRVTFLDDPLRVLRAVRFASRFNCTLEDDLRAAAQ 216 Query: 188 VASIKAKKGLKILSSERIWSEINKLL--EAKNPLNAIVHMYNGGIFKEIFL 236 + ++ K+ S ER+ E++ +L A +P A+ +++ + + +FL Sbjct: 217 LEEVRVALVRKV-SRERVGKELSGMLTGSAAHPERALCLLHDLHLCESVFL 266 >gi|169831364|ref|YP_001717346.1| CBS domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638208|gb|ACA59714.1| CBS domain containing protein [Candidatus Desulforudis audaxviator MP104C] Length = 873 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 16/182 (8%) Query: 119 RRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFT+NAL D+ G+VIDY GG +DL + ++ + H ED +R+L+ + Sbjct: 568 RRDFTVNALAVGLNPDRFGEVIDYFGGRDDLHHGVVRALHS--HSFEEDPVRLLQAVQLE 625 Query: 175 AHYGEKNIDSDGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 +G NI+ + L +A + L +RIW+E +LL+ + + ++ Sbjct: 626 QRFG-FNIERETLKLIREAVRDRLLSQAPPDRIWAEFRRLLKEPRVPATLARLAQLNLWP 684 Query: 233 EIFLDVQEISLDQL-SQVIEA-EQVFEWKIDS-----LLRFIVLISWQDKKSILSMAKKF 285 +F D+ + + S + +A + + WK+ L FI ++ W++ + + + + Sbjct: 685 SLFPDILYWEVQPMISGIPKALDSLGSWKVPQPAEPWLCYFIAILHWKNLVVVDELCRSY 744 Query: 286 SL 287 L Sbjct: 745 RL 746 >gi|15806210|ref|NP_294915.1| tRNA nucleotidyltransferase/poly A polymerase family protein [Deinococcus radiodurans R1] gi|6458932|gb|AAF10763.1|AE001968_2 tRNA nucleotidyltransferase/poly A polymerase family protein [Deinococcus radiodurans R1] Length = 434 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 35/259 (13%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + +VGGAVRD L + D D A + + P G ++ + Sbjct: 15 AALVGGAVRDWLRGVRSADYDWAHPDPAAGARALAALVGGAAFPLDEERGYWRVTAGEVQ 74 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 D L +L D R RRDFT+NA+ + +++D +GG DL+ R Sbjct: 75 HDFVPLPPNLEDDLR---------------RRDFTVNAIALREGRRLVDPLGGQQDLKRR 119 Query: 149 TIKFIGDAHHRILEDYLRILRFFRF-----FAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 ++ + + + R D LR R RF F + + A +KA + L + E Sbjct: 120 VLRMVSEDNLRA--DPLRAWRAARFVTTLSFTLEPQTEQAVRQVAADLKAGR-LPFPAWE 176 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---------LDQLSQVIEA-E 253 R+ E++ LL + + I+ + G+ +++E LD +EA Sbjct: 177 RVRDELHALLRSPDAARGILTLEALGLLDLTLPELREGQGLTQGGFHHLDVFEHGVEALH 236 Query: 254 QVFEWKIDS--LLRFIVLI 270 Q+ + D+ LLR+ L+ Sbjct: 237 QLLTRRPDADLLLRWATLL 255 >gi|303388807|ref|XP_003072637.1| tRNA nucleotidyltransferase/poly(A) polymerase [Encephalitozoon intestinalis ATCC 50506] gi|303301778|gb|ADM11277.1| tRNA nucleotidyltransferase/poly(A) polymerase [Encephalitozoon intestinalis ATCC 50506] Length = 460 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 7/151 (4%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVG-GLNDLRN 147 D LR++ ++ R V + D+ RRD TIN+L+ + K V DY G G++D++N Sbjct: 103 DFVNLRNETYSETRIPNVN-PGTPQEDAFRRDLTINSLFYNLFTKEVEDYTGRGIDDIKN 161 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK---NIDSDGLVASIKAKKGLKILSSER 204 + + D + +D LR++R FRF + G K I+ + IK G K+ S+ER Sbjct: 162 KLLITPLDPRTTLFDDPLRLVRIFRFHSKLGFKIDGKIEEALMDERIKRALGKKV-SNER 220 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 I EI K+L ++ + G +F Sbjct: 221 IHIEIFKILHYPRGQYGLLEIVRRGYVSPVF 251 >gi|212551022|ref|YP_002309339.1| tRNA nucleotidyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549260|dbj|BAG83928.1| tRNA nucleotidyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 474 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 20/200 (10%) Query: 31 IVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++GG VRD ++ +DID+ L V + + +YGT ++ R Sbjct: 33 VIGGFVRDIFLHRLSKDIDVVCVGNGISLAKEVAKSLGSASLILFK---NYGTAQLKYRD 89 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 + R + + +V + D RRDFTIN L ++ G++ID GL Sbjct: 90 IAIEFVGARKESYSWAFRNPIVEEGSLEDDIKRRDFTINTLAICINQNRFGELIDIFDGL 149 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLK 198 DL +I+ D +D LR+LR RF + G K +S G + Sbjct: 150 TDLEECSIRTPLDPDITFSDDPLRMLRAIRFASQLGFFIESKTFESIG-----NNCNRIN 204 Query: 199 ILSSERIWSEINKLLEAKNP 218 I+S ERI E+NK++ + P Sbjct: 205 IVSRERIVDELNKIILSPRP 224 >gi|206602179|gb|EDZ38661.1| Putative polyA polymerase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 419 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 91/401 (22%), Positives = 160/401 (39%), Gaps = 75/401 (18%) Query: 28 KSCIVGGAVRDSLM--NLSVQDIDIAT---------TILPDRVMRIFSKTRYKVIPTSIS 76 K+ +VGG VRD +M + +ID+A +I +++ + ++ + Sbjct: 18 KAYVVGGWVRDMVMLRRPTRPEIDLAVEGDAVQWGESIAESFGVQVGRVSEFRTCKIDVL 77 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQ 132 + + + DI R+D VV D RRDF++NA L Q Sbjct: 78 HDGVPV-----RIDIAPCRTDSYPVPGGMPVVTASSIHEDLYRRDFSVNAMAFPLEDPFQ 132 Query: 133 GK--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVA 189 G ++D VGG DL + ++ + A +D +RI R FRF G ++ + + Sbjct: 133 GSFLLMDPVGGCEDLARKELRILSPAS--FDDDPVRIFRLFRFQERLGFHPDLQTSRALE 190 Query: 190 SIKAKKGLKILSSERIWSEINKLL--EAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 S + S R+W EI + E++ P+ IF+ + E L L Sbjct: 191 SARLNGAFLRSSKSRLWDEIQAAIREESRCPI----------IFRWLLEKPWENFLPSLK 240 Query: 248 -QVIEAEQVFEWKIDSLLRFIVLIS-----WQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +VF W D L + + S W K+++L +A + +PR+ C Sbjct: 241 MSSPRRRRVFAW--DRLTTYESVFSPMGRFW--KETLLLLALFYGIPRQ---------EC 287 Query: 302 NFNQKTLSIPEIK------KLFYL-YGDK----------VMIAKLKIFLALHYNNLTHQD 344 + + L +PE + LF + +G + + I+ IFL L + Sbjct: 288 DRGLRLLGVPEKRAKIVRESLFPVSFGKRREKTYQPDILLNISPQMIFLNLVRGG--AES 345 Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 + +++ H LTG D++K GI ++GN+L Sbjct: 346 LASFKKTVAEADHHPLRETSLTGRDLIKEGIDSSPEIGNLL 386 >gi|33864724|ref|NP_896283.1| polyA polymerase [Synechococcus sp. WH 8102] gi|33632247|emb|CAE06703.1| possible polyA polymerase [Synechococcus sp. WH 8102] Length = 403 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 14/168 (8%) Query: 23 NKGEDKSCIVGGAVRDSLMN-------LSVQDIDI----ATTILPDRVMRIFSKTRYKVI 71 G + +VGG VRD L++ V D+D + L D + R + Sbjct: 20 EAGVPRLALVGGVVRDLLLHQRHGRPWTGVPDLDWVVEGSAAHLADVLQERCGTERVSGV 79 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130 +GT+ + D+ T R + VV AD +RRD TINA+ D Sbjct: 80 QHHGQFGTVALNLDGVPLDLATARQEHYPRPAENPVVQPGSLAADLVRRDLTINAMALDL 139 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 G++ID GG +DL ++F+ I +D R++R R+ A G Sbjct: 140 MSGELIDLHGGQSDLAAGRLQFLHPGS--ISDDPTRVIRAARYGARLG 185 >gi|156098615|ref|XP_001615323.1| tRNA nucleotidyltransferase [Plasmodium vivax SaI-1] gi|148804197|gb|EDL45596.1| tRNA nucleotidyltransferase, putative [Plasmodium vivax] Length = 689 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 37/235 (15%) Query: 11 HDSDLINILSLLNKGEDKSC---IVGGAVRDSLMNLSVQDIDIATTILPD----RVMRIF 63 + +L L +N+ C +VGG VRD + +S DID+ + ++ + Sbjct: 53 EEEELFAFLQKVNETYKLQCTLRVVGGWVRDKFLGISNDDIDLTVDNMKGSEFCNYIKEY 112 Query: 64 SKTRYKVIPTSISYGTIKIICRKK-------------YFDITTLRSDLITDGRYAKVVFT 110 + + K + ++G IKI + D+ LR++ T+ + Sbjct: 113 IQEKEK---KNFNFGIIKINSDQSKHLETSSFNLFNFQVDVVNLRNEKYTEDSRIPEIII 169 Query: 111 RDWKADSLRRDFTINALYAD-QQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+LRRDFT+NAL+ + +V DY G+ L+N+ I D L+D LRI+ Sbjct: 170 GTPEEDALRRDFTVNALFYNLNNRRVEDYTRRGILHLKNKIICTPLDPLSTFLDDPLRII 229 Query: 169 RFFRF---FAHYGEKNI----DSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R RF F + EK+I ++ ++ + K K +S R+ SEI K+ + Sbjct: 230 RCIRFCGVFNFFLEKSIFDVLKNEQILKAFKKK-----ISRSRLSSEIVKIFSQR 279 >gi|302779734|ref|XP_002971642.1| hypothetical protein SELMODRAFT_25834 [Selaginella moellendorffii] gi|300160774|gb|EFJ27391.1| hypothetical protein SELMODRAFT_25834 [Selaginella moellendorffii] Length = 197 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 22/196 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP-----DRVMRIFSKT----RYKVIPTSISYG--- 78 + GG VRD L+ + D+DIA + DRV+ KT YKVI ++ Sbjct: 3 VAGGWVRDKLLGVESHDLDIALDDMTGQQFCDRVVPCLRKTDPPCSYKVIKSNPERSKHL 62 Query: 79 -TIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 T K+ D+ LRS+ + D R + D+ RRD TIN+L+ + KV Sbjct: 63 ETTKLEILGGELDVVNLRSETYSKDSRIPTSMKFGTPSEDAYRRDLTINSLFYNVAADKV 122 Query: 136 IDYVG-GL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVA 189 D+ G GL DL+ I+ L+D LR+LR RF A + ++ ++ Sbjct: 123 EDFTGRGLCVKDLKLGKIRTPLPPLVTFLDDPLRVLRSIRFAARFNFELDEELECVASAD 182 Query: 190 SIKAKKGLKILSSERI 205 S+KA KI + ERI Sbjct: 183 SVKAAFETKI-TRERI 197 >gi|283957229|ref|ZP_06374690.1| putative multifunctional Cca protein [Campylobacter jejuni subsp. jejuni 1336] gi|283791241|gb|EFC30049.1| putative multifunctional Cca protein [Campylobacter jejuni subsp. jejuni 1336] Length = 359 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 41/248 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGG+VRD + L + D DI I P +I K + + S + + Sbjct: 14 RAYLVGGSVRDLFLGLKICDYDIELYDIKPKDFEKIMQKLGAQGLGKSF------FVHKF 67 Query: 87 KYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVG 140 K +D+ R++ I+ G +V D K + RRDFTIN+ L+ D+ +D+ G Sbjct: 68 KNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDE---FLDFYG 124 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI- 199 GL DL ++ I + ED LR+LR F + + K I S+ S+K + + I Sbjct: 125 GLKDLGTGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-ITSE----SLKLMQSMDIT 177 Query: 200 -LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE- 257 LS +RI +E+ K K+P + + Y +QE+ L++ Q+ E VF+ Sbjct: 178 DLSKDRINAELYKFF--KSPRLDVGYRY-----------LQELDLEK--QIFGFESVFKS 222 Query: 258 WKIDSLLR 265 + +LLR Sbjct: 223 LEFQNLLR 230 >gi|313673710|ref|YP_004051821.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Calditerrivibrio nitroreducens DSM 19672] gi|312940466|gb|ADR19658.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Calditerrivibrio nitroreducens DSM 19672] Length = 439 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 29/208 (13%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRI-FSKTRYKVIPTSISYGTIKIICRKKYF- 89 VGG VRD L+ V DID ++P+++ + ++ + I S + + K F Sbjct: 32 VGGVVRDILLGRDVNDID----LVPEKIDYVSCAEMLNRYIKGSFVHFKDNVRITKGGFT 87 Query: 90 -DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRN 147 DI+ LR I D D +RDFTIN L Y ++G +G DL N Sbjct: 88 IDISRLRGLSIVD--------------DLKKRDFTINNLAYHFEKG----LLGDPTDLNN 129 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I+ + D L+D LR+LR +RF + +G I+ V + L + +ERI Sbjct: 130 KIIRAVSD--QSFLDDPLRVLRGYRFASQFGF-TIEPHTGVLMKRYAPLLVDIPAERINK 186 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E+N+ L +N L + M IF IF Sbjct: 187 ELNETLLGENFLRILDTMIEDDIFLIIF 214 >gi|317050443|ref|YP_004111559.1| polynucleotide adenylyltransferase region [Desulfurispirillum indicum S5] gi|316945527|gb|ADU65003.1| Polynucleotide adenylyltransferase region [Desulfurispirillum indicum S5] Length = 502 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 108/269 (40%), Gaps = 33/269 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-----TTILPDRVMRIFSKTRYKVIPTSISYGTIKII-- 83 I GG VRD L + D+D+ +R+ + +R+ + P + + Sbjct: 33 IAGGWVRDHLRGIVTSDMDVLLLNMDAEAFAERLQQRGYGSRHIIEPKPAQARMARTVRV 92 Query: 84 C------RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVI 136 C + D+ TL + DG + D+ RD TINAL+ D V Sbjct: 93 CLSLPSGERFEVDLGTLATG---DGESLDEAL----RQDAAGRDLTINALFYDPATATVE 145 Query: 137 DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAK 194 D G GL+DLR ++ G + +D LR+LR RF A G + L+ + + Sbjct: 146 DRTGQGLDDLRRGLLRVPGARRCNLWDDPLRLLRIARFHATTGFAVEAQTRCLMDDRQLQ 205 Query: 195 KGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + L + S ERI E+ + A+ +++ G+ + L Q + E Sbjct: 206 QRLVRCTSPERIGQELLAMWSHPRGSRAMELLHDCGVLDALLLASQ-------GEGELVE 258 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMA 282 Q+ W +D L WQ SI +MA Sbjct: 259 QLASWDMDQGNGHHALNLWQ--HSIAAMA 285 >gi|310825256|ref|YP_003957614.1| polynucleotide adenylyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309398328|gb|ADO75787.1| Polynucleotide adenylyltransferase [Stigmatella aurantiaca DW4/3-1] Length = 256 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 21/190 (11%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M I+ H + +++ LL + +VGGA RD L V+D+D++ Sbjct: 1 MEQIICRDAGHAVRIQDVIELLQGRGMRVFVVGGACRDWLTGEPVKDVDLSLDRPVKEAH 60 Query: 61 RIFSKTRYKVIPT--------SISYGTIKIICRKKYFDITTLRS--DLITDGRYAKVVFT 110 I + + P ++S+G + D+ LRS D+ D + Sbjct: 61 AILRQAFPGMDPVLRRNERFGTLSWGDAAL----GGVDLNILRSHHDIQNDDMWTTSFVA 116 Query: 111 R-DWKADSLRRDFTINALY--ADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILE-DYL 165 R D + D+L RDF++NA Y ++G++ D +G G+ DLR R ++ I H R+L Y Sbjct: 117 REDLREDALTRDFSMNAFYYPCHEEGRLWDPLGCGVEDLRGRVLRLI--THPRVLSTSYR 174 Query: 166 RILRFFRFFA 175 R +F Sbjct: 175 TTFRIIQFLC 184 >gi|124515673|gb|EAY57182.1| putative polyA polymerase family protein [Leptospirillum rubarum] Length = 419 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 91/411 (22%), Positives = 155/411 (37%), Gaps = 85/411 (20%) Query: 28 KSCIVGGAVRDSLM--NLSVQDIDIA---------TTILPDRVMRIFSKTRYKVIPTSIS 76 K+ +VGG VRD LM + +ID+A I +RI + ++ + Sbjct: 18 KAYVVGGWVRDMLMLRRPTRPEIDLALEGDAVQWGEAIAESFGVRIGRVSEFRTCKIDVL 77 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-- 134 + + + DI + R+D VV D RRDF++NA+ + Sbjct: 78 HDKVPV-----RIDIASCRTDDYPVPGGMPVVTPSSIYEDLYRRDFSVNAMAFPLEEPFQ 132 Query: 135 ----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVA 189 ++D VGG DL + ++ + A +D +RI R FRF G ++ + Sbjct: 133 NSFLLMDPVGGYEDLVRKELRILSPASFE--DDPVRIFRLFRFQERLGFTPDLRTSRAFE 190 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS-Q 248 S + S R+W EI + ++ AIV F+ + E +L L Sbjct: 191 SARLNGAFLRSSKSRLWDEIQAAIREES-RCAIV-------FRWLLEKPWENALPSLKMS 242 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-----CNF 303 ++VF W R V +S+ S +F RE+ L F+ C+ Sbjct: 243 SPRRKRVFAWD-----RLTV------HESVFSPLGRFW--REMLLLLALFYGLPRQECDR 289 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----- 358 + L +PE + + + +F N IL LS + + Sbjct: 290 GLRLLGVPE---------KRARVLRESLFPVPSENGREKTAQSDILPNLSPQMIFLNLVR 340 Query: 359 -----------------KKPL--FPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 ++PL LTG D++K GI P ++GN+L+ ++ Sbjct: 341 GGPETFASFEKALADRDQQPLGEMSLTGRDLIKEGIEPSPEMGNLLIEIRE 391 >gi|298492601|ref|YP_003722778.1| polynucleotide adenylyltransferase region ['Nostoc azollae' 0708] gi|298234519|gb|ADI65655.1| Polynucleotide adenylyltransferase region ['Nostoc azollae' 0708] Length = 907 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 76/331 (22%), Positives = 135/331 (40%), Gaps = 74/331 (22%) Query: 31 IVGGAVRDSLM------NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIP 72 +VGG+VRD L+ L + DID+ A L + +I+ R ++ Sbjct: 493 LVGGSVRDLLLVEAQPGTLMINDIDLVVDGFHQAADVGAGIELAKALQQIYQNARLEI-- 550 Query: 73 TSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ T ++ K + DI T R++ V + D RRDFTINA Sbjct: 551 -HGAFQTAALLWHKDPELDSLWVDIATSRTEFYPYPAANPEVEASSIRQDLYRRDFTINA 609 Query: 127 ----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---- 178 L + + G+++D+ GGL DL+ + ++ + + +ED RI R RF +G Sbjct: 610 MALRLTSPRSGELLDFFGGLLDLQAKQVRILHP--NSFIEDPTRIYRGVRFAVRFGFQIE 667 Query: 179 --------------------EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 ++N + L +KA+ K + + W LL+ Sbjct: 668 QRTEEYIRYAINSGVYDRTSQENTKTPALQTRLKAE--FKNILAATYWQSALHLLDNLGA 725 Query: 219 LNAIVHM--YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276 L + H +G + ++ L + +I L + Q + + +W+ +R VL++ + K Sbjct: 726 LRCLHHSLKLDGEVLRQ--LSLLDIYLRRFGQ---QQNLHDWQ----MRLEVLVAHLEPK 776 Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 +AK L + IS FN F +T Sbjct: 777 YQAKVAKNLQLADDS----ISRFNKLFAAQT 803 >gi|302779736|ref|XP_002971643.1| hypothetical protein SELMODRAFT_25836 [Selaginella moellendorffii] gi|300160775|gb|EFJ27392.1| hypothetical protein SELMODRAFT_25836 [Selaginella moellendorffii] Length = 197 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 22/196 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP-----DRVMRIFSKT----RYKVIPTSISYG--- 78 + GG VRD L+ + D+DIA + DRV+ KT YKVI ++ Sbjct: 3 VAGGWVRDKLLGVESHDLDIALDDMTGQQFCDRVVPCLRKTDPSCSYKVIKSNPERSKHL 62 Query: 79 -TIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 T K+ D+ LRS+ + D R + D+ RRD TIN+L+ + KV Sbjct: 63 ETTKLEILGGEIDVVNLRSETYSNDSRIPTSMKFGTPSEDAYRRDLTINSLFYNVAADKV 122 Query: 136 IDYVG-GL--NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVA 189 D+ G GL DL+ I+ L+D LR+LR RF A + ++ ++ Sbjct: 123 EDFTGRGLCVTDLKLGKIRTPLSPLVTFLDDPLRVLRSIRFAARFNFELDEELECVASAD 182 Query: 190 SIKAKKGLKILSSERI 205 S+KA KI + ERI Sbjct: 183 SVKAAFKTKI-TRERI 197 >gi|315271264|gb|ACO45425.2| putative tRNA nucleotidyltransferase/poly A polymerase family protein [Deinococcus deserti VCD115] Length = 433 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 28/220 (12%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK- 87 + +VGGA RD L ++ +D D A ++ +T V P G ++ + Sbjct: 15 ALLVGGAARDWLRGVAPKDFDWAVPDPAAAAAQLAQETGGAVFPLDEVRGYWRVHAPGEI 74 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 D L +++ AD LRRDFT+NAL +V+D G DLR Sbjct: 75 QHDFVPLPAEVT---------------ADLLRRDFTVNALALTADRQVLDPAQGQQDLRT 119 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRF-------FAHYGEKNIDSDGLVASIKAKKGLKIL 200 + ++ + + + D LR+ R RF E+ + V + A L + Sbjct: 120 KQLRMV--SADNLWADPLRVWRAARFEVTLRFRLEAETERTVRE---VTTALASGRLSMP 174 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ERI E++ LL N I + + G+ +++E Sbjct: 175 AAERIRDELHALLSHPNSALGIQRLEDLGLLSLTMPELRE 214 >gi|308813708|ref|XP_003084160.1| polynucleotide adenylyltransferase family protein (ISS) [Ostreococcus tauri] gi|116056043|emb|CAL58576.1| polynucleotide adenylyltransferase family protein (ISS) [Ostreococcus tauri] Length = 596 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NA++ D ++ +++D+VGG+ND+ R ++ + + + ED +R+LR R A +G Sbjct: 258 RDFTVNAMFYDPRRNEILDFVGGMNDVLARVVRTVKPTYESLREDPVRMLRAIRLAARHG 317 >gi|260436050|ref|ZP_05790020.1| tRNA nucleotidyltransferase/poly [Synechococcus sp. WH 8109] gi|260413924|gb|EEX07220.1| tRNA nucleotidyltransferase/poly [Synechococcus sp. WH 8109] Length = 402 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 14/168 (8%) Query: 23 NKGEDKSCIVGGAVRDSLMN-------LSVQDIDIATT----ILPDRVMRIFSKTRYKVI 71 + G + +VGG VRD L++ V D+D L D +M+ R + Sbjct: 20 DAGVTRLALVGGVVRDLLLHHLHGVPWAGVPDLDWVVEGDALALTDVLMQRCGSQRVTDV 79 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +YGT+ + D+ + R ++ V + D LRRDFTINA+ D Sbjct: 80 QHYGAYGTVALRFDGIPVDLASARREIYPAPAQNPKVEPGTLEQDLLRRDFTINAMAIDL 139 Query: 132 QG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +++D+ G L ++ + + D H I +D R++R R+ A G Sbjct: 140 MAEQLVDFHSGQRGLTDKQLTLLHD--HSIRDDPTRVIRAARYAARLG 185 >gi|325295446|ref|YP_004281960.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065894|gb|ADY73901.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 482 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 59/246 (23%) Query: 27 DKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIPTSISY----GTI 80 +K+ +VGG VRD L+ +S DIDI T D ++++ + +S ++ I Sbjct: 23 EKAYLVGGFVRDKLLGISKDTVDIDIVTV---DELLKVKECISKVLKASSFTFEKEKTVI 79 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK------ 134 + K DI+ L + + D L+RDFTINA+ D + Sbjct: 80 TFLSDKFRLDISNLHG--------------KTLEEDLLKRDFTINAIAVDLKKLFSSSND 125 Query: 135 ---VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF-----------FAHYGEK 180 +ID GG DL+ R I+ I + R +D +RI+R RF F +Y +K Sbjct: 126 YIFLIDPFGGFEDLKKRLIRPINEKSLR--DDPVRIIRGVRFKILLQFDYHPSFLNYSKK 183 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ LK +ERI E+ K+L A+ GIF +F ++ Sbjct: 184 ILEK------------LKESPTERIKEELIKILRIDKTSEALKDFNYIGIFPLVFPEL-- 229 Query: 241 ISLDQL 246 +SL+ + Sbjct: 230 VSLESV 235 >gi|119484314|ref|ZP_01618931.1| Phosphoesterase, RecJ-like protein [Lyngbya sp. PCC 8106] gi|119457788|gb|EAW38911.1| Phosphoesterase, RecJ-like protein [Lyngbya sp. PCC 8106] Length = 928 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 6/95 (6%) Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLN 143 + DI T R++ V + D RRDFTINAL +G+++D+ GG+N Sbjct: 584 WIDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINALALRLTQPYEGELLDFFGGMN 643 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 DL+ R I+ + + +ED RI R RF G Sbjct: 644 DLQTRNIRVL--HANSFIEDPTRIYRAVRFAVRLG 676 >gi|332710747|ref|ZP_08430688.1| tRNA nucleotidyltransferase/poly(A) polymerase/CBS-domain-containing membrane protein [Lyngbya majuscula 3L] gi|332350524|gb|EGJ30123.1| tRNA nucleotidyltransferase/poly(A) polymerase/CBS-domain-containing membrane protein [Lyngbya majuscula 3L] Length = 688 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 35/178 (19%) Query: 31 IVGGAVRDSLM-----NLSVQDID------------IATTILPDRVMRIFSKTRYKVIPT 73 +VGGAVRD L+ L + DID IA L + +I+ K R +V Sbjct: 268 VVGGAVRDLLLADGNKPLLLNDIDLVVDGFHRSADAIAGVTLAKELRKIYRKVRLEV--- 324 Query: 74 SISYGTIKIICRKKY------FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 S+ T ++ DI T R++ V + D RRDFTINA+ Sbjct: 325 HGSFQTAALLWHNDPKFGSLCVDIATARTEFYPYPAANPQVEASSIRQDLYRRDFTINAM 384 Query: 128 YA-------DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 A Q ++D+ GG+ DLR++ I+ + + +ED RI R RF G Sbjct: 385 AARLTKVNPQAQLPLLDFFGGMLDLRSQKIRVL--HANSFIEDPTRIYRAVRFAVRLG 440 >gi|268318089|ref|YP_003291808.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Rhodothermus marinus DSM 4252] gi|262335623|gb|ACY49420.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Rhodothermus marinus DSM 4252] Length = 561 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPD---RVMRIFSKT-RYKVIPTSISYGTIKIIC--- 84 VGG VRD ++ DID T+ P R+ R+ ++ + + ++GT I Sbjct: 51 VGGVVRDLFLDRPTTDIDF-VTVGPGTGIRLARLVARALGGRTVHVYENFGTAAIRVPTP 109 Query: 85 -RKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVID 137 R F + R + +V D RRDFTINA L+ + G +ID Sbjct: 110 DRSGVFVLEFVAARRESYRKDSRKPIVEDGTLDDDLRRRDFTINAMAIDLWPSRWGTLID 169 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 G DLR R ++ D +D LR++R RF A + ++ D A + + Sbjct: 170 PFHGRRDLRQRLLRTPLDPRQTFEDDPLRMIRAARFAAQLNFR-VEPDTFAAMREKAHRV 228 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ILS ERI E+ K+L A P + + GI IF ++ Sbjct: 229 EILSQERITDELQKILCAPQPSIGFKILESTGILARIFPEL 269 >gi|15615444|ref|NP_243747.1| hypothetical protein BH2881 [Bacillus halodurans C-125] gi|10175503|dbj|BAB06600.1| BH2881 [Bacillus halodurans C-125] Length = 427 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 85/386 (22%), Positives = 156/386 (40%), Gaps = 55/386 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI----SYGTIKIICRK 86 +VGG VRD L + D+D+ I D + FS+ V+ + + T + + Sbjct: 46 LVGGTVRDMLRGVPGGDLDL--VIEGDAL--AFSQNVANVLGGKVKHHEPFATATWVGAE 101 Query: 87 KY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGG 141 DI + R++ + D RRDF+INA L+ G+++D G Sbjct: 102 NLKLDIVSARAESYAKPGALPTIRHSHITDDLARRDFSINAMAIHLHPASYGQLVDPFHG 161 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGLK 198 +DL N I+ + ++D R+LR RF + + E+ + L L Sbjct: 162 RHDLTNGLIRILHS--QSFIDDPTRLLRGVRFVSRFNYRFEQKTANLALATQPALTNALA 219 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI----FLDVQEISLDQLSQVIEAEQ 254 +S ERI E+ L +P+++ + + +++ + F L +L + E Sbjct: 220 NVSPERIVHELKLLCHETDPVSSFSKLEDLHVWQALLGLTFSSSSATHLSRLQEEQNGEP 279 Query: 255 VFEWKIDSLLRFIVLISWQDKK---SILSMAKKFSLPRE---IRYFLISFFNCNFNQKTL 308 + ++ + + F+ +W+ +I +M ++F E R ++ F+ ++ K L Sbjct: 280 LHWFQAIATVGFLE-DNWKASLVPFAITAMEQRFLQNIEDIQKRLTNMTRFSTDYLHKQL 338 Query: 309 -SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP-LT 366 +PE FY + K VL +H +K L P LT Sbjct: 339 YQVPEEPLRFYALSSGEEMQK----------------------VLDLYLHQRKQLQPLLT 376 Query: 367 GDDVVKYGIPPGK--KVGNILVHCKQ 390 G D+++ G+ P K +L C+Q Sbjct: 377 GHDLMELGMKPSPLFKECLLLHECEQ 402 >gi|148265148|ref|YP_001231854.1| polynucleotide adenylyltransferase region [Geobacter uraniireducens Rf4] gi|146398648|gb|ABQ27281.1| Polynucleotide adenylyltransferase region [Geobacter uraniireducens Rf4] Length = 450 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 33/219 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT---------RYKVIPTSISYG 78 K+ +VGG VRD L+ ++D+D A T + R F+K+ ++ + G Sbjct: 27 KAYLVGGGVRDLLLGRRLKDLDFALTGACAELPRRFAKSIGGSFFWLDEERLQGRVVRKG 86 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG---KV 135 ++ FD R + I + D +RDFTINAL G + Sbjct: 87 GDGVLT----FDFAPQRGETIEE--------------DLSQRDFTINALALPLAGGKYAL 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG +DL+ I+ A +D LR+LR RF A G ID Sbjct: 129 IDPTGGFSDLQKGIIRACSPASFS--DDPLRLLRAVRFAATLG-FAIDEASRQTITMESA 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L+ ++ ER+ E+ ++L A ++ + + G+ +I Sbjct: 186 LLERVAGERVRDELFQILAAPGIETSLNALLDSGLLGQI 224 >gi|115373987|ref|ZP_01461277.1| hypothetical protein STIAU_3379 [Stigmatella aurantiaca DW4/3-1] gi|115368994|gb|EAU67939.1| hypothetical protein STIAU_3379 [Stigmatella aurantiaca DW4/3-1] Length = 274 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H + +++ LL + +VGGA RD L V+D+D++ DR ++ + Sbjct: 29 HAVRIQDVIELLQGRGMRVFVVGGACRDWLTGEPVKDVDLSL----DRPVKEAHAILRQA 84 Query: 71 IPTSISYGTIKIICRKKYF-------------DITTLRS--DLITDGRYAKVVFTR-DWK 114 P G ++ R + F D+ LRS D+ D + R D + Sbjct: 85 FP-----GMDPVLRRNERFGTLSWGDAALGGVDLNILRSHHDIQNDDMWTTSFVAREDLR 139 Query: 115 ADSLRRDFTINALY--ADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILE-DYLRILRF 170 D+L RDF++NA Y ++G++ D +G G+ DLR R ++ I H R+L Y R Sbjct: 140 EDALTRDFSMNAFYYPCHEEGRLWDPLGCGVEDLRGRVLRLI--THPRVLSTSYRTTFRI 197 Query: 171 FRFFA 175 +F Sbjct: 198 IQFLC 202 >gi|330937476|ref|XP_003305586.1| hypothetical protein PTT_18480 [Pyrenophora teres f. teres 0-1] gi|311317307|gb|EFQ86312.1| hypothetical protein PTT_18480 [Pyrenophora teres f. teres 0-1] Length = 902 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 49/254 (19%) Query: 32 VGGAVRDSLMNLSVQDIDIATT--------------------------ILPDRVMRIFSK 65 GG VRD L+ + DID+A I P+ + K Sbjct: 59 TGGWVRDKLLKVGSNDIDVAINKMTGEHFGLKMQEYLEIPGNAEKHGLIEPNDDLNARDK 118 Query: 66 TRYKVIP------------TSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRD 112 T+ K+ P ++ T KI+ D+ LR + + R ++ F Sbjct: 119 TK-KIAPGLHKIEANPEKSKNLETATTKIMGID--LDLVNLRKETYNEVSRNPQMEFGTA 175 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRD T+NA++ + +V D+ G G +D+ + I+ + + +D LR+LR Sbjct: 176 -EEDAMRRDATVNAMFYNLHTCQVEDFTGRGHDDMAAKIIRTPLEPYQTFKDDPLRVLRL 234 Query: 171 FRFFAHYGEKNIDSDGLVASIKA--KKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYN 227 RF + + I+ + A A + LKI +S ER+ E+ K+L+ P A+ + Sbjct: 235 IRFASRL-DYTIEPETAKAMGNADIQDVLKIKISRERVGIELEKMLKGPRPRMALELIDR 293 Query: 228 GGIFKEIFLDVQEI 241 G+++ +F D + Sbjct: 294 FGLYRTVFTDPTRV 307 >gi|148241341|ref|YP_001226498.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. RCC307] gi|147849651|emb|CAK27145.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. RCC307] Length = 394 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 34/195 (17%) Query: 29 SCIVGGAVRDSLMNL--SVQDIDIATTILPDRVM----RIFSKTRYKVIPTSISYGTIKI 82 S +VGGAVRD+L+ D+D+ ++P + R+ + R + ++ Sbjct: 41 SALVGGAVRDALLQRLGPYPDLDL---VVPQGAIKLCQRLAKQHRGTAVVLDRERDMARL 97 Query: 83 ICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGK-VIDYV 139 + D+ DLI+D + RRD+ INAL G+ ++D Sbjct: 98 VLGPWSLDLAAQEGPDLISDLQ---------------RRDYGINALALPLTPGEALLDPT 142 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG--L 197 GGL DL R ++ + +A+ +L D LR+LR R A E N + A++ + G L Sbjct: 143 GGLGDLATRQLRALSEAN--LLADPLRLLRGPRLAA---ELNFSLESHTAALIRRHGPAL 197 Query: 198 KILSSERIWSEINKL 212 +++ER+ +E+ KL Sbjct: 198 PQVAAERVLAELEKL 212 >gi|73539928|ref|YP_294448.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Ralstonia eutropha JMP134] gi|123626027|sp|Q476S9|CCA_CUPPJ RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|72117341|gb|AAZ59604.1| metal dependent phosphohydrolase [Ralstonia eutropha JMP134] Length = 415 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 25/199 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ QD D + P + K K P + T +++Y Sbjct: 6 VGGAIRDELLGKPSQDRDYVVVGATPADMEAAGYKPVGKDFPVFLHPRT-----KEEY-- 58 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKA----DSLRRDFTINALY--ADQQGK----VIDYVG 140 R++ T Y F + D +RRD TINA+ D GK VID G Sbjct: 59 -ALARTERKTAMGYKGFAFYCEPDVTLDDDLVRRDLTINAMARAVDDDGKLVGPVIDPHG 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL R + + +A ED +RILR RF A + + + + L+ + + Sbjct: 118 GQRDLAARQFRHVSEA---FAEDPVRILRVARFAARFHDFTVAPETVALMRRMVDAGEVD 174 Query: 199 ILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EA+ Sbjct: 175 ALVPERVWQELARGLMEAR 193 >gi|222109737|ref|YP_002552001.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax ebreus TPSY] gi|254813690|sp|B9MCK1|CCA_ACIET RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|221729181|gb|ACM32001.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax ebreus TPSY] Length = 425 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 114/278 (41%), Gaps = 37/278 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V D D + PD ++ + P + T R++Y Sbjct: 5 MVGGAVRDRLLGRPVNDHDWVVVGATPDDMVARGYLPVGRDFPVFLHPET-----REEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYA--DQQGK--VIDYVGGL 142 T R G VV T + D RRD TINA+ A D G + D GG Sbjct: 60 LARTERKS--GRGYRGFVVQTSPDVTLEEDLSRRDLTINAIAASADWTGAEDLFDPYGGA 117 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+ R ++ + D+ ED +RILR RF A + + + + L+ + L Sbjct: 118 RDLQARVLRHVTDS---FREDPVRILRVARFAARFTDFTVAPETMQLMREMVHDGEADHL 174 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWK 259 ER+W E+ + L P + + G + +V+ + + Q + + + Sbjct: 175 VPERVWQELARGLMEPQPSRMFDVLRDCGALAVVLPEVERLWGVPQRPE-------YHPE 227 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +D+ + ++ +L MA P +R+ ++ Sbjct: 228 VDTGVHLMM---------VLDMAAHLQAPLTVRFACLT 256 >gi|116071594|ref|ZP_01468862.1| possible polyA polymerase [Synechococcus sp. BL107] gi|116065217|gb|EAU70975.1| possible polyA polymerase [Synechococcus sp. BL107] Length = 404 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 14/171 (8%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMN-------LSVQDIDIATTILPDRV----MRIFSKTRY 68 + + G + +VGGAVRD L++ V D+D P R+ +R + R Sbjct: 17 AAIGAGVKRLAMVGGAVRDGLLHERYGRAWSGVPDLDWVLEGDPMRLAAELLRRCGEQRV 76 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++GT+ + D R + VV +D +RRDFTINA+ Sbjct: 77 MALQSYGAFGTVALKLDGVALDFAMARRESYPMPAENPVVEPGSLDSDLVRRDFTINAMA 136 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 D G++ID G DL + F+ D + +D R++R R+ A G Sbjct: 137 QDLLSGQLIDPHRGQQDLAAGRLLFLHD--ESVSDDPTRVIRACRYAARLG 185 >gi|197119266|ref|YP_002139693.1| tRNA nucleotidyltransferase [Geobacter bemidjiensis Bem] gi|197088626|gb|ACH39897.1| tRNA nucleotidyltransferase, putative [Geobacter bemidjiensis Bem] Length = 399 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 18/188 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 + GG VRD L+ ++ QD+D+A + + + ++++ S S I R+++ Sbjct: 22 LTGGMVRDFLLGVACQDVDLAAAVTAAELASL----GFRLV-ESKSTPNIYFSYRQEFGK 76 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 I R + + + +D RRDF +NA+ G +ID + G DL R + Sbjct: 77 IEVTRLESV-----------EELTSDLFRRDFRVNAMAMSLDGALIDPLHGKADLEQRIL 125 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 I +D LRI R RF + +++ L+ S+ + ER E+ Sbjct: 126 SAC--TQTSITDDPLRIFRALRFECEGWHLDREAEALLVSLDWSDAFAAIPVERFSQEML 183 Query: 211 KLLEAKNP 218 K L P Sbjct: 184 KALAKPEP 191 >gi|262199673|ref|YP_003270882.1| polynucleotide adenylyltransferase region [Haliangium ochraceum DSM 14365] gi|262083020|gb|ACY18989.1| Polynucleotide adenylyltransferase region [Haliangium ochraceum DSM 14365] Length = 287 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 12/133 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI----SYGTIKIICRK 86 +VGGA RD L + +D D+A +RV + R+ I + +G ++ Sbjct: 59 VVGGAPRDWLCGETARDFDVAVNQPIERVQAAL-RERFPDIEGVLFEYPHFGMMRWGTTG 117 Query: 87 KYFDITTLR--SDLITDGRYAKVVFT--RDWKADSLRRDFTINALYADQQGKVI-DYVG- 140 DI LR +DL +G A F+ D AD+ RDF+INA Y +G V+ D +G Sbjct: 118 SGIDINILRTAADLHPEG-VASSQFSPGSDLAADARMRDFSINAFYYPCRGPVVFDPLGC 176 Query: 141 GLNDLRNRTIKFI 153 GL++LR+RT++ + Sbjct: 177 GLDELRSRTLRMV 189 >gi|218678591|ref|ZP_03526488.1| Polynucleotide adenylyltransferase region [Rhizobium etli CIAT 894] Length = 134 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPL 362 +S ++L Y G + +LK+ LA+ + + ++L +WKKP Sbjct: 24 MSSAAFERLLYRNGQDGITTRLKLALAVARGKAEGDLGEMARSARLTKLLDQAANWKKPQ 83 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 FPL G DV+ GI PG +VG +L + +W+ +F Sbjct: 84 FPLNGGDVLSAGIAPGPRVGELLGSLECQWVEENF 118 >gi|269468139|gb|EEZ79846.1| tRNA nucleotidyltransferase/poly(A) polymerase [uncultured SUP05 cluster bacterium] Length = 361 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 35/225 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID---IATTILPDRVMRIFSKTRYKVIPTSISYGTI---- 80 K +VGGAVRD L+ ++ ++ + + P+ ++ + + K P + GT Sbjct: 2 KKYLVGGAVRDRLLGIANENTEKDWVVVGSSPEEMLDLGYRQVGKEFPVFLHPGTQEEYA 61 Query: 81 ------KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 K+ K F+ T ++V +D RRD TINA+ D Sbjct: 62 LARVERKVGAGYKGFEFDT----------SSEVTLEQDLS----RRDLTINAIAQDGN-D 106 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSD-GLVAS 190 +ID G DL N ++ + A ED +R+LR RF F +G K S L+ Sbjct: 107 LIDPFHGQKDLSNGLLRHVSGA---FGEDPVRVLRVARFAARFKSFGFKVAHSTHQLMQQ 163 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + + L ER++ E+NK L P + G F +F Sbjct: 164 MVSSGEVDALIPERVFKELNKALSYDTPSAFFKVLSACGAFGRVF 208 >gi|33864176|ref|NP_895736.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9313] gi|33635760|emb|CAE22085.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9313] Length = 419 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 19/180 (10%) Query: 16 INILSLLNK-----GEDKSCIVGGAVRDSLMNL-------SVQDIDI----ATTILPDRV 59 + +L++L + G + +VGGAVRD L++ + D+D+ + +L + Sbjct: 18 MGLLAVLQQVASEVGIKRLALVGGAVRDGLLHRVHFDPWRGLPDLDLVVEGSAVVLAKAL 77 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 R + + +YGT++++ D+ T R + V + D R Sbjct: 78 RRHLGPEQLPQLRVHGAYGTVELVVDGVLLDLATARQETYASPGQNPQVTEGHLEEDLAR 137 Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NA+ + G ++D G L R + F+ + + +D R++R R+ A G Sbjct: 138 RDFTVNAMALELPGMTLLDPHDGWAALAMRQLVFLHS--NSVADDPTRVVRGARYAARLG 195 >gi|317153392|ref|YP_004121440.1| tRNA cytidylyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316943643|gb|ADU62694.1| tRNA cytidylyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 370 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 37/218 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI---PTSISYGTIKIICRKK 87 + GGAVRD L+ + D D T TR + P S G + Sbjct: 5 LAGGAVRDLLLGRPINDRDYLVT----------GATRQEFTDRFPNSREVG--------R 46 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKAD-SLR-RDFTINALYADQQGKVIDYVGGLNDL 145 F + + DG + F R+ + LR RD T+NA+ D+ G +I + L+DL Sbjct: 47 TFPV------FLLDG--LEFSFPREVAVEQELRSRDLTVNAMLLDEDGDLICHPDSLDDL 98 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK--AKKG-LKILSS 202 +RT++ + L D LR+ R RF+A + D LV +++ A G L L + Sbjct: 99 HSRTLRPA--SRQSFLSDPLRVFRAARFWAKLPDFTP-HDELVETMRLVADTGLLAPLPA 155 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +R+ E K L+ +P N + + G + F + +E Sbjct: 156 DRVGQETIKALQTASPGNYLRLLGRAGCLEPWFKEFKE 193 >gi|37521022|ref|NP_924399.1| poly A polymerase [Gloeobacter violaceus PCC 7421] gi|35212018|dbj|BAC89394.1| gll1453 [Gloeobacter violaceus PCC 7421] Length = 582 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 23/203 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-- 88 +VGGAVRD L+ + D+D+ ++ R + + T+++ C +KY Sbjct: 190 LVGGAVRDLLLGETSSDLDV---VVEGRGGEAGAAPALARA-IAAEDATLRLECFEKYQT 245 Query: 89 ----------FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG----K 134 D+ T R++ V + + D RRDFTINA+ G + Sbjct: 246 AALIWPDGFVLDLATARTEFYPRPGANPEVESASIRLDLYRRDFTINAMAVCLNGPRAWQ 305 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID+ GG DLR R ++ + + +ED RI R RF G Sbjct: 306 LIDFFGGFVDLRERIVRVL--HPNSFIEDPTRIFRAVRFALRLGFAIAPQTEAFIVRSVS 363 Query: 195 KGLKIL-SSERIWSEINKLLEAK 216 GL L ER+ +E+ LL A Sbjct: 364 GGLHDLYGGERLKTELGYLLAAP 386 >gi|72383504|ref|YP_292859.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. NATL2A] gi|72003354|gb|AAZ59156.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. NATL2A] Length = 418 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 14/158 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDI-----------ATTILPDRVMRIFSKTRYKVIPTSISYG 78 IVGG VRD + Q+ +I T+ + ++ R KVI + +Y Sbjct: 37 AIVGGVVRDLIKKSKNQNYEIIFNDLDLIIEGETSTYIKELQKVLGAERVKVIRDNRNYK 96 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 T ++I DI + R + +V K D +RRDF INA+ + + ++ID Sbjct: 97 TSEVIINGIKVDIASARKETYPIPGENPIVELSTIKKDLIRRDFNINAMAIELKDNRLID 156 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 G + + N + F+ + +L+D R++R R+ A Sbjct: 157 LFSGSDAIENMKMDFLHKSS--VLDDPTRVIRASRYSA 192 >gi|189206463|ref|XP_001939566.1| tRNA nucleotidyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975659|gb|EDU42285.1| tRNA nucleotidyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 897 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 49/250 (19%) Query: 32 VGGAVRDSLMNLSVQDIDIATT--------------------------ILPDRVMRIFSK 65 GG VRD L+ + DID+A I P+ + K Sbjct: 59 TGGWVRDKLLKVGSNDIDVAINKMTGEHFGLKMQEYLEIPGNAEKHGLIEPNDDLDARDK 118 Query: 66 TRYKVIP------------TSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRD 112 T+ K+ P ++ T KI+ D+ LR + + R ++ F Sbjct: 119 TK-KIAPGLHKIEANPEKSKNLETATTKIMGID--LDLVNLRKETYNEVSRNPQMEFGTA 175 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRD T+NA++ + +V D+ G G +D+ + I+ + + +D LR+LR Sbjct: 176 -EEDAMRRDATVNAMFYNLHTCQVEDFTGRGHDDMAAKIIRTPLEPYQTFKDDPLRVLRL 234 Query: 171 FRFFAHYGEKNIDSDGLVASIKA--KKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYN 227 RF + + I+ + A A + LKI +S ER+ E+ K+L+ P A+ + Sbjct: 235 IRFASRL-DYTIEPETAKAMGNADIQDVLKIKISRERVGIELEKMLKGPRPRMALELIDR 293 Query: 228 GGIFKEIFLD 237 G+++ +F D Sbjct: 294 FGLYRTVFTD 303 >gi|254424203|ref|ZP_05037921.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Synechococcus sp. PCC 7335] gi|196191692|gb|EDX86656.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Synechococcus sp. PCC 7335] Length = 482 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 32/178 (17%) Query: 31 IVGGAVRDSLMN--------------LSVQDIDIA----------TTILPDRVMRIFSKT 66 IVGGAVRD L+N L + DID+ T + ++ + Sbjct: 60 IVGGAVRDLLLNRVGNDRAGSKVENSLPLTDIDLVVENQVNTADETAVGAGVILAEAIQA 119 Query: 67 RYKVIPTSI--SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 Y I + + T + + DI T R++ V D D RRDFTI Sbjct: 120 EYPEIEAQVHGQFQTATLTWQSWQIDIATARTEFYAYPAANPAVEPSDIYRDLYRRDFTI 179 Query: 125 NA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NA L Q G+++D G DL+ R ++ + +ED RI R RF G Sbjct: 180 NAIALKLTGSQPGQLLDIFNGQADLQQRLVRVLHT--DSFIEDPTRIFRAVRFAVRLG 235 >gi|19173101|ref|NP_597652.1| tRNA ADENILYL TRANSFERASE [Encephalitozoon cuniculi GB-M1] gi|19168768|emb|CAD26287.1| tRNA ADENILYL TRANSFERASE [Encephalitozoon cuniculi GB-M1] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 25/203 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPD---RVMRIFSKTRYKVIPTSI-------SYGTI 80 + GG VRD +M D+DIA + V + S T K+ + S Sbjct: 32 VAGGWVRDKIMGNPSFDMDIALENISGYKFAVGLVQSATGQKLTDVHVIKDNPEKSKHLE 91 Query: 81 KIICRKKYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVID 137 + R F D LR++ ++ R V + D+ RRD TIN+L+ + ++ D Sbjct: 92 TAVVRINGFCVDFVNLRNETYSETRIPNVK-PGTPQEDAFRRDLTINSLFYNLFTEEIED 150 Query: 138 YVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNID---SDGLVAS 190 Y G GL D+ + + D +L+D LR++R FRF + G +K ID D V Sbjct: 151 YTGRGLEDIGRKVLATPLDPRTTLLDDPLRLVRIFRFHSKLGFTIDKKIDEALEDKRVKV 210 Query: 191 IKAKKGLKILSSERIWSEINKLL 213 AKK +S+ERI EI K+L Sbjct: 211 ALAKK----VSNERIHIEIFKIL 229 >gi|212702794|ref|ZP_03310922.1| hypothetical protein DESPIG_00824 [Desulfovibrio piger ATCC 29098] gi|212673656|gb|EEB34139.1| hypothetical protein DESPIG_00824 [Desulfovibrio piger ATCC 29098] Length = 893 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 85/398 (21%), Positives = 153/398 (38%), Gaps = 67/398 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR----- 85 +VGG VRD L++ D+D R + + + T +I Sbjct: 486 VVGGFVRDLLLDRPNHDVDFVVEGEGVAFARALAAELGGRVREHRKFLTSMVIYHDEDGL 545 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 ++ D+ T R + V K D RRDFTINAL G+++D+ GG Sbjct: 546 EQRIDVATARLEYYESPAALPTVELSSIKMDLFRRDFTINALAIRLDCTPYGQLVDFFGG 605 Query: 142 LNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLK 198 D++ ++ + H + +ED R LR RF YG ++ L+ ++ + L Sbjct: 606 QRDIKEGVLRVL----HTLSFVEDPTRSLRAVRFEQRYGFHIGPSAEKLIKNLLSLHMLD 661 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS +RI++E + + ++P + G+ + + LS Q+ + Sbjct: 662 KLSGKRIFNEYTHICDEEDPAACFERLDGLGLLRALG--------PSLSLTPSKRQILQ- 712 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL-----ISFFNCNFNQKTLSIPEI 313 ++ S+L + L+ + + S+ + YFL +++ + N L +PE Sbjct: 713 QVCSMLNWYRLLYFDE-----------SVENWLIYFLALGHRLNYAEVSANFAALGLPEG 761 Query: 314 KKLFYLYGDKVM--------------------IAKLKIFLA------LHYNNLTHQDTCF 347 +K L + M I++L + L L Y +D+ Sbjct: 762 RKQEILQQRESMRHVQPKLARWQKAFEAGTGRISELYLLLEKFSLEFLLYIMAGVEDSGL 821 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 + I W++ + G D+ GI PG G IL Sbjct: 822 QKNLSRYITQWRREKPDIDGRDLRDMGIAPGPLFGRIL 859 >gi|307297665|ref|ZP_07577471.1| Polynucleotide adenylyltransferase region [Thermotogales bacterium mesG1.Ag.4.2] gi|306916925|gb|EFN47307.1| Polynucleotide adenylyltransferase region [Thermotogales bacterium mesG1.Ag.4.2] Length = 864 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 34/228 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 IVGG VRD L+N I+ + +F++T K Y IKI+ +++ Sbjct: 477 IVGGFVRDLLLNKKNL----DLDIVVEGNANLFAETFKK-------YFNIKIVEHREFLA 525 Query: 90 -----------DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGK 134 D+ T R++ V K D RRDF+INA L + G Sbjct: 526 SSMFFNDGLRIDVATARTEYYKKPAILPEVEMSTIKKDLYRRDFSINAMAIKLNQEDFGI 585 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASI 191 +ID+ G DL I+ A H + +ED RILR RF +G E + + L+ Sbjct: 586 LIDFFGSRKDLSKGIIR----ALHPLSFIEDPTRILRAVRFEQRFGFEIEVRTAELLKQC 641 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 A+ L ++ +R+ E++K +E PL A+ + + G+ +++F + + Sbjct: 642 AAEGYLDRVTGQRLRDELSKAIEEPLPLKALRRLASLGVMEKLFPETE 689 >gi|319791744|ref|YP_004153384.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Variovorax paradoxus EPS] gi|315594207|gb|ADU35273.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Variovorax paradoxus EPS] Length = 421 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 31/206 (15%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGT-IKIICRKKY 88 +VGGAVRD ++ V D D + P+ TR +P + + R++Y Sbjct: 5 LVGGAVRDRVLGRPVSDHDWLVVGATPE------DMTRRGYLPVGRDFPVFLHPKTREEY 58 Query: 89 FDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALY-------ADQQ-----G 133 T R G V T + D RRD TINA+ AD Q Sbjct: 59 ALARTERKS--APGYRGFTVHTAPDVTLEQDLARRDLTINAIALPAELVSADGQFEPDPD 116 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASI 191 + D G DLR++ ++ + DA ED +RILR RF A + + ++ + L+ + Sbjct: 117 HLADPFHGQRDLRDKVLRHVTDA---FREDPVRILRLARFAARFDDFSVAPETMALMREM 173 Query: 192 KAKKGLKILSSERIWSEINK-LLEAK 216 L ER+W E+ + L+EA+ Sbjct: 174 VRAGEADALVPERVWQELARGLMEAR 199 >gi|218192024|gb|EEC74451.1| hypothetical protein OsI_09859 [Oryza sativa Indica Group] Length = 558 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 29/190 (15%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 I +H W +L L + + +VGG VRD L+ + +D D+ TT ++ ++ Sbjct: 81 IPRHAW-------TVLHRLKRKGFAAYLVGGCVRDLLLKRAPKDFDVITTASLQQIKKM- 132 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK----VVFTRDWK----- 114 V I G IC+ + S T+ + K + + ++K Sbjct: 133 ------VFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEFKRYDEG 186 Query: 115 -----ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 +S++RDFTIN+L+ + K+ DYV G+ D+ + + A ED RIL Sbjct: 187 DILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKEDPARIL 246 Query: 169 RFFRFFAHYG 178 R R A G Sbjct: 247 RGLRIAARLG 256 >gi|78357015|ref|YP_388464.1| hypothetical protein Dde_1972 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219420|gb|ABB38769.1| CBS protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 898 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 91/412 (22%), Positives = 158/412 (38%), Gaps = 48/412 (11%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII-----CRK 86 VGG +RD L+ D+D+ R +K I + T +I + Sbjct: 493 VGGFIRDLLLGRPNLDLDLVVEGDGITFARRLAKQLNGRIREHQKFKTAVVIFDDENGVE 552 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGL 142 D+ T R + V K D RRDFTINAL G+++D+ G Sbjct: 553 SRIDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTINALAVQLNESSFGRLVDFFGSQ 612 Query: 143 NDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKI 199 D++++ I+ + H + +ED RILR RF Y + L+ + ++ Sbjct: 613 QDIKDKRIRVL----HSLSFVEDPTRILRAIRFEKRYNFAIGPQTSRLIKNALGLGLMEK 668 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 LS R++ E+ + E +PL M + + + V +S + + + E+V W Sbjct: 669 LSGSRLFHELRLITEEASPLACFKRMEEFDLLRSVH-PVLALSYGKEQIIADVEKVLGWH 727 Query: 260 ------------IDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFNCNFNQK 306 LL + D + +L K+ LPR + R F++ N Sbjct: 728 RLLYQDPAAEAWTVHLLALCHNAKYADVRDLL---KRLYLPRKQSRDFMLLRENTREAAA 784 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-QDTCFILQVLSDIIHWKKPL--- 362 LS +L D+ M I +L L + + ++ + H+ L Sbjct: 785 LLST-------WLKKDRSMSGLYNILHSLPPEGLLYIMARTRVDEIRKFVSHYLTKLRDI 837 Query: 363 -FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL---HHLLRK 410 ++G+D+ G PG G +L H ++ + +E L H +LR+ Sbjct: 838 RTDISGEDLQAMGGHPGPCFGKVLNHVLAAKLDGAAHSRKEQLELAHSMLRR 889 >gi|16330751|ref|NP_441479.1| polyA polymerase [Synechocystis sp. PCC 6803] gi|1653244|dbj|BAA18159.1| polyA polymerase [Synechocystis sp. PCC 6803] Length = 942 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 37/180 (20%) Query: 31 IVGGAVRDSLM----------NLSVQDIDI------------ATTILPDRVMRIFSKTRY 68 +VGGAVRD + N++ QDID+ A L + + R Sbjct: 514 LVGGAVRDLWLRHSQGAEKHQNITFQDIDLVVDGFHATADVGAGVELAQALQGDYPGARL 573 Query: 69 KVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 V + T ++ K + DI T R++ V + D RRDF Sbjct: 574 SV---HGEFQTAALLWHKDPQLDTLWVDIATARTEFYPYPAANPEVEASSIRQDLYRRDF 630 Query: 123 TINAL----YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINAL GK++D+ GG+NDL+++ ++ + + +ED RI R RF G Sbjct: 631 TINALSIRLTNPNPGKLLDFFGGMNDLQSQQVRVL--HANSFIEDPTRIYRAVRFVVRLG 688 >gi|293332685|ref|NP_001168693.1| hypothetical protein LOC100382483 [Zea mays] gi|223950275|gb|ACN29221.1| unknown [Zea mays] Length = 535 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 24/163 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD +M + +D DI TT +V F + +++ G IC + Sbjct: 105 LVGGCVRDLIMKKTPKDFDIITTADLRQVKDTF-------LGSAVIVGRRFPICHVHENN 157 Query: 91 ITTLRSDLITDGR--------------YAKVVFTRDWKADSLRRDFTINAL-YADQQGKV 135 S T R +K F R WK + RRDFTIN L + K+ Sbjct: 158 SIVEVSSFNTCARGSSGSQIYNSKSQNCSKNDFVR-WK-NCQRRDFTINGLMFNPYSEKI 215 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 DY+GG+ D++ ++ + A ED RILR R A G Sbjct: 216 YDYLGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLG 258 >gi|327198468|ref|YP_004327056.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Erwinia phage phiEa104] gi|311875164|emb|CBX44424.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Erwinia phage phiEa104] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 39/207 (18%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG++RD++ + D D + ++++ + K K P I+ +I ++ Sbjct: 5 LVGGSIRDAVFGKASSDHDFVVVNATEEQLLDLGLKKVGKAFPVFITDDGTEIAMARREN 64 Query: 90 DITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN---- 143 +D + TDG T D D LRRDFTINA + V++ GG N Sbjct: 65 STGEGYNDFEVETDG------VTLD--EDLLRRDFTINACAS----AVVN--GGANTDEL 110 Query: 144 ---------DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVAS 190 DL +R ++ + DA R ED LRILR RF A + N+ ++ L Sbjct: 111 ICAHPMSRYDLAHRILRVV-DAD-RFKEDPLRILRGLRFAARH---NLFIEPETKALFRQ 165 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKN 217 + L L ERIW EI K A+N Sbjct: 166 MIEANCLAHLPKERIWKEIEKAASAEN 192 >gi|167627235|ref|YP_001677735.1| tRNA CCA-pyrophosphorylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597236|gb|ABZ87234.1| tRNA nucleotidyl transferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 368 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M I G KI+ F Sbjct: 5 LVGGAVRDILLGIAPKDRDWVVVGATETQM--------------IKAGFTKILSSFPVFL 50 Query: 90 ------DITTLRSDL-ITDGRYA-KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ I G + +V F+ + + D RRD TIN++ D+ +ID Sbjct: 51 HPETKEEYALARSEKKIAKGYHGFEVNFSSNITLEEDLKRRDLTINSMAIDKNNNIIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 G ND++NR ++ +A +ED LR++R RF Sbjct: 111 NGQNDIKNRILRHTSEA---FIEDPLRVVRLARF 141 >gi|268680133|ref|YP_003304564.1| polynucleotide adenylyltransferase region [Sulfurospirillum deleyianum DSM 6946] gi|268618164|gb|ACZ12529.1| Polynucleotide adenylyltransferase region [Sulfurospirillum deleyianum DSM 6946] Length = 375 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 15/212 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGG+VRD ++ + D+DI I P+ + + ++ G + + Sbjct: 28 RAYLVGGSVRDICVDEPLHDLDIEVYDIAPETFDNLMQRI------GAVGVGKSFFVYKW 81 Query: 87 KYFDITTLRSDLITD-GRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLN 143 D + R + + G A +V D K S RRDFTINA+ + +++D+ G Sbjct: 82 GNIDFSLPRIERKSGVGHNAFEVEVCEDEKEASKRRDFTINAMMLNIFTYELLDFWDGQK 141 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 + +R + I + + ED LR+LR +F A G K I+S L+ I + L L+ Sbjct: 142 AILDRLLVIIDE--EKFKEDSLRVLRAMQFSARLGFK-IESKSLM--IMREIALSDLTKP 196 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 RI E KL A + +MY +F++ F Sbjct: 197 RILWEFEKLFNASYLHYGLFYMYQLELFEKCF 228 >gi|219681338|ref|YP_002456102.1| tRNA nucleotidyltransferase/poly(A) polymerase [Erwinia phage phiEa21-4] gi|199580605|gb|ACH88992.1| tRNA nucleotidyltransferase/poly(A) polymerase [Erwinia phage phiEa21-4] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 39/207 (18%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG++RD++ + D D + ++++ + K K P I+ +I ++ Sbjct: 5 LVGGSIRDAVFGKASSDHDFVVVNATEEQLLDLGLKKVGKAFPVFITDDGTEIAMARREN 64 Query: 90 DITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN---- 143 +D + TDG T D D LRRDFTINA + V++ GG N Sbjct: 65 STGEGYNDFEVETDG------VTLD--EDLLRRDFTINACAS----AVVN--GGANTDEL 110 Query: 144 ---------DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVAS 190 DL +R ++ + DA R ED LRILR RF A + N+ ++ L Sbjct: 111 ICAHPMSRYDLAHRILRVV-DAD-RFKEDPLRILRGLRFAARH---NLFIEPETKALFRQ 165 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKN 217 + L L ERIW EI K A+N Sbjct: 166 MIEANCLAHLPKERIWKEIEKAASAEN 192 >gi|241667788|ref|ZP_04755366.1| tRNA CCA-pyrophosphorylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876332|ref|ZP_05249042.1| tRNA nucleotidyl transferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842353|gb|EET20767.1| tRNA nucleotidyl transferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 368 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF- 89 +VGGAVRD L+ ++ +D D + M I G KI+ F Sbjct: 5 LVGGAVRDILLGIAPKDRDWVVVGATETQM--------------IKAGFTKILSSFPVFL 50 Query: 90 ------DITTLRSDL-ITDGRYA-KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYV 139 + RS+ I G + +V F+ + + D RRD TIN++ D+ +ID Sbjct: 51 HPETKEEYALARSEKKIAKGYHGFEVNFSSNITLEEDLKRRDLTINSMAIDKNNNIIDPF 110 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 G ND++NR ++ +A +ED LR++R RF Sbjct: 111 NGQNDIKNRILRHTSEA---FIEDPLRVVRLARF 141 >gi|291533884|emb|CBL06997.1| tRNA nucleotidyltransferase/poly(A) polymerase [Megamonas hypermegale ART12/1] Length = 410 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 14/194 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGG VRD + + +D D + + F + K S+ + K + Sbjct: 19 IVGGWVRDKIRGVIPKDKDFVICHVKEE---DFKQNFPKAKKVGKSFPVYLVKIEDKECE 75 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKA----DSLRRDFTINAL-YADQQGKVIDYVGGLNDL 145 + +R + T Y + D K D RRD T+N++ Y + GK+ID G D+ Sbjct: 76 VAFVRKERKTGIGYTGFIVDYDEKVTIEEDLYRRDTTMNSIAYRVRDGKIIDPYKGREDI 135 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSER 204 R I + H ED +R LR R K N D+ L+ S + + +K ER Sbjct: 136 EKRCINAVS---HHFKEDPVRALRAARQACELNFKINEDTINLMRSCREE--IKSEPQER 190 Query: 205 IWSEINKLLEAKNP 218 I++E+ + L+ K P Sbjct: 191 IFNELQRALKTKKP 204 >gi|121592935|ref|YP_984831.1| metal dependent phosphohydrolase [Acidovorax sp. JS42] gi|166233837|sp|A1W3D0|CCA_ACISJ RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|120605015|gb|ABM40755.1| metal dependent phosphohydrolase [Acidovorax sp. JS42] Length = 425 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 37/278 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V D D + PD ++ + P + T R++Y Sbjct: 5 MVGGAVRDRLLGRPVNDHDWVVVGATPDDMVARGYLPVGRDFPVFLHPET-----REEYA 59 Query: 90 DITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQ----GKVIDYVGGL 142 T R G VV T + D RRD TINA+ A + D GG Sbjct: 60 LARTERKS--GRGYRGFVVQTSPDVTLEEDLSRRDLTINAIAASAAWTGAEDLFDPYGGA 117 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+ R ++ + D+ ED +RILR RF A + + + + L+ + L Sbjct: 118 RDLQARVLRHVTDS---FREDPVRILRVARFAARFTDFTVAPETMQLMREMVHDGEADHL 174 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWK 259 ER+W E+ + L P + + G + +V+ + + Q + + + Sbjct: 175 VPERVWQELARGLMEPQPSRMFDVLRDCGALAVVLPEVERLWGVPQRPE-------YHPE 227 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +D+ + ++ +L MA P +R+ ++ Sbjct: 228 VDTGVHLMM---------VLDMAAHLQAPLTVRFACLT 256 >gi|299755930|ref|XP_001828982.2| transfer RNA nucleotidyltransferase [Coprinopsis cinerea okayama7#130] gi|298411445|gb|EAU92989.2| transfer RNA nucleotidyltransferase [Coprinopsis cinerea okayama7#130] Length = 477 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRD TINAL+ + V D+ GL+DLR+ I+ +D LR+LR RF Sbjct: 76 DAKRRDITINALFYNVHTHSVEDFTEKGLDDLRDGLIRTPLPPKETFKDDPLRVLRCVRF 135 Query: 174 FAHYGEKNID--SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 + +G +D S + + ++ ER+ E++K+L+ ++PL +I ++ +F Sbjct: 136 ASRFGFDLVDEISSAAKDPVIQDALVTKVTRERVGVELSKMLKGRDPLRSIELIHQLSLF 195 Query: 232 KEI 234 I Sbjct: 196 TPI 198 >gi|213405453|ref|XP_002173498.1| tRNA nucleotidyltransferase [Schizosaccharomyces japonicus yFS275] gi|212001545|gb|EEB07205.1| tRNA nucleotidyltransferase [Schizosaccharomyces japonicus yFS275] Length = 492 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 43/235 (18%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPD--------------------RVMRI---FSKTR 67 I GG VRD L+++ DID+A + RV+RI SK++ Sbjct: 43 IAGGWVRDKLLSIPCHDIDVAVDCMSGFEFAQLVHRYCEQNNIQNSGRVVRIDANPSKSK 102 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T +G I + D LRS T T D+LRRD TIN+L Sbjct: 103 HLETATGRLFG-IDV-------DFVGLRSHAYTHHSEENKFGTP--LEDALRRDTTINSL 152 Query: 128 YADQQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF-----FAHYGEK 180 + + + + D+ GL DL + I+ A +D LR +R RF F+ + E Sbjct: 153 FYNIHTRSVEDFTEMGLEDLEKKVIQTPLPAMETFSDDALRAVRCIRFASKFQFSIHPET 212 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G+ L +S ERI +E+ K+L+ KN A+ Y I IF Sbjct: 213 QA---GIQNPAVQHTLLHSISRERIGTEVEKMLKNKNAKLAVDLSYQLHIADAIF 264 >gi|258593577|emb|CBE69918.1| putative tRNA cytidylyltransferase [NC10 bacterium 'Dutch sediment'] Length = 430 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 31/216 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI-ICRKKYFD 90 VGG VRD L+ DID+ + + + V+ + +GT + + D Sbjct: 35 VGGYVRDLLLGRENADIDLVVEGDAIAIAGRLAHSLKAVVASHPRFGTAHLRLPGGGKLD 94 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--DQQ--GKVIDYVGGLNDLR 146 + T R + V AD RRDF+INA+ A D+ G +ID +GGL +L Sbjct: 95 LATARRERYPHAAALPEVQPAPLLADLFRRDFSINAMAARIDRHRFGPLIDPLGGLRNLE 154 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + I+ + + ++D R+ R RF Y + L I Sbjct: 155 HGRIRALHE--QSFIDDPTRLFRTARFEGRY--------------------RFL----IA 188 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 +L++A A+ H+ IF+E++L QE S Sbjct: 189 RCTLRLMKAAVKEGAVGHLAGSRIFRELYLIAQEPS 224 >gi|119509884|ref|ZP_01629027.1| Polynucleotide adenylyltransferase region [Nodularia spumigena CCY9414] gi|119465493|gb|EAW46387.1| Polynucleotide adenylyltransferase region [Nodularia spumigena CCY9414] Length = 425 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 45/206 (21%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 + IVGGAVRD+L+ + + +D+ +IP+ + G + I R Sbjct: 26 PAYIVGGAVRDALLGRTREYLDLDF-----------------IIPSG-AVGVAQAIARHY 67 Query: 88 YFDITTLRSDLITDGRYAKVVF---TRDW---KADSL-----RRDFTINAL-YADQQGKV 135 L + A+VVF T D+ + DSL RRDFTINA+ Y ++ Sbjct: 68 QAGFVLLDPQ----RQIARVVFPEATVDFAQQEGDSLETDLHRRDFTINAIAYNPHTAEI 123 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAK 194 ID + G DL ++ + A+ + +D LR++R +R A D+D + S+ Sbjct: 124 IDPLQGRADLEQGILRMVSPANLK--DDPLRLMRAYRQAAQLDFTIEPDTDKTIQSL--- 178 Query: 195 KGLKIL--SSERIWSEINKLLEAKNP 218 L+I+ ++ER+ EIN LL NP Sbjct: 179 -ALQIIEVAAERVRVEINYLL--ANP 201 >gi|22298062|ref|NP_681309.1| polyA polymerase [Thermosynechococcus elongatus BP-1] gi|22294240|dbj|BAC08071.1| tll0519 [Thermosynechococcus elongatus BP-1] Length = 907 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 94/413 (22%), Positives = 154/413 (37%), Gaps = 62/413 (15%) Query: 31 IVGGAVRDSLMNLS-----------------VQDIDIATTILPDRVMRIFSKTR---YKV 70 +VGGAVRD L+ ++ VQ + A L + ++ +T Y Sbjct: 478 LVGGAVRDLLLAIAQGNHHLPTREFDLVVDGVQQEEAAGVHLAQALHALYPETDLQIYGQ 537 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-- 128 T+ + DI T RS+ V + D RRDFTINAL Sbjct: 538 FQTAALHWPKASPLAGFAVDIATARSEFYPYPAAHPEVAASSIRQDLYRRDFTINALAMR 597 Query: 129 --ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------- 178 + G+V+D+ GG DL I+ + + +ED RI R RF G Sbjct: 598 LTPPRHGEVLDFFGGQEDLERGLIRVLHP--NSFIEDPTRIFRAVRFAVRLGFEVEPQSR 655 Query: 179 ---EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG-----I 230 E + S V + L S R+ +E+ LLE PL H GG + Sbjct: 656 QYIEYALTSGVFVTRDRPTSKRPSLQS-RLRNELRHLLEL--PLAPNEHF--GGERALTL 710 Query: 231 FKEI----FLDVQEISLDQLSQV---------IEAEQVFEWKIDSLLRFIVLISWQDKKS 277 E+ LD Q ++ D+ ++V E + EW+ L +L + Sbjct: 711 LAELGALECLDRQ-VTFDEGAKVRLQLVWQWWPEIPERREWQTFPLWELELLALIVTVPT 769 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 ++A++ L + +L +F +TL ++ Y + L + LA Sbjct: 770 AGAIARQLQLGEHLCEWLDTFPQFQQEWQTLRQTTPQRSHYWAFLESHPLPLIVLLAAVL 829 Query: 338 NNLTHQDTCFILQVLSDII-HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 + +L + + W+ PL G D+ + G P G ++ IL+ + Sbjct: 830 QAEGRAPALAEVTLLREYLWQWRVQKLPLNGHDLQQLGYPRGPQLRQILLALR 882 >gi|242075570|ref|XP_002447721.1| hypothetical protein SORBIDRAFT_06g014480 [Sorghum bicolor] gi|241938904|gb|EES12049.1| hypothetical protein SORBIDRAFT_06g014480 [Sorghum bicolor] Length = 542 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 24/163 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD +M + +D DI TT +V FS + ++ G IC + Sbjct: 112 LVGGCVRDLIMKKTPKDFDIITTADLRQVKDTFSGS-------AVIVGRRFPICHVHENN 164 Query: 91 ITTLRSDLITDGR--------------YAKVVFTRDWKADSLRRDFTINAL-YADQQGKV 135 S T R +K F R WK + RDFTIN L + K+ Sbjct: 165 SIVEVSSFYTSARGSSGSQIYNSKSQNCSKNDFVR-WK-NCQGRDFTINGLMFNPYSEKI 222 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 DY+GG+ D++ ++ + A ED RILR R A G Sbjct: 223 YDYLGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLG 265 >gi|32169733|emb|CAD90573.1| putative poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125] Length = 323 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 19/148 (12%) Query: 114 KADSLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDF+INALY I DY GL ++ + I+ IGD R ED +R+LR R Sbjct: 16 EEDAERRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAVR 75 Query: 173 F-------FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL-LEAKNPLNAIVH 224 F A EK + + +AS+ L + R++ EI KL L K N ++ Sbjct: 76 FATKLDMKIAPNSEKPMTA---LASL-----LDNIPPARLFEEILKLFLNGKAQANYLM- 126 Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + G+F +F ++ I LD +EA Sbjct: 127 LRKYGLFNSLFPELNRI-LDNNPGGLEA 153 >gi|15893603|ref|NP_346952.1| PolyA polymerase [Clostridium acetobutylicum ATCC 824] gi|15023154|gb|AAK78292.1|AE007545_9 PolyA polymerase [Clostridium acetobutylicum ATCC 824] gi|325507723|gb|ADZ19359.1| PolyA polymerase [Clostridium acetobutylicum EA 2018] Length = 458 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 19/154 (12%) Query: 28 KSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 ++ IVGG +RD LMN S D+DIA ++++ K + KV +I Sbjct: 18 EAYIVGGYIRDKLMNPKNSASDLDIAFQGDFEKILDELRKRKIKVSSIKKDSSVYRITVN 77 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLND 144 DI+ ++ I + D +RDFT+NA+ D + K++D G Sbjct: 78 GYCADISKIKGKNINE--------------DLSKRDFTVNAIALDIKNNKIVDPFDGRVH 123 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 ++ R ++ I + +D +RILR RF+ YG Sbjct: 124 IKRRILQVIDEKSFE--DDAVRILRGIRFYIKYG 155 >gi|303290648|ref|XP_003064611.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454209|gb|EEH51516.1| predicted protein [Micromonas pusilla CCMP1545] Length = 787 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+N L D Q G++ D+V G++D+RN+ ++ I A+ ED R++R R A + Sbjct: 569 RDFTLNGLLYDVQSGELYDFVNGIDDIRNQVVRSITPANEAFQEDPARMVRAIRVAARHD 628 Query: 179 EKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + + LV++I+A L + R+ +E+ +L A+ ++ G+ + + + Sbjct: 629 FRP--APDLVSAIRANARLVRAEPPARMAAELLTVLSCGYAARAVRVLWECGLLEHLMRE 686 >gi|125548115|gb|EAY93937.1| hypothetical protein OsI_15711 [Oryza sativa Indica Group] Length = 542 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 20/161 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------RYKVIPTSISYGTIKIIC 84 +VGG VRD +M + +D DI TT +V FS + R+ + + +++ Sbjct: 112 LVGGCVRDLIMKKTPKDFDIITTADLRQVKDTFSGSAVIVGRRFPICHVYENNSIVEVSS 171 Query: 85 RKKYF------DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVID 137 Y I T +S + Y + WK + RDFTIN L + K+ D Sbjct: 172 FNTYARGSTSNQIYTSKSPHCSKNDYIR------WK-NCQGRDFTINGLMFNPYAEKIYD 224 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 Y GG+ D++ ++ + A ED RILR R A G Sbjct: 225 YFGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLG 265 >gi|254431966|ref|ZP_05045669.1| poly A polymerase family [Cyanobium sp. PCC 7001] gi|197626419|gb|EDY38978.1| poly A polymerase family [Cyanobium sp. PCC 7001] Length = 411 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 34/195 (17%) Query: 29 SCIVGGAVRDSLMN-LSVQ-DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 S +VGGAVRD+L+ LS Q D+D+ ++P + + + ++ T++ + I R Sbjct: 34 SALVGGAVRDALLGRLSAQPDLDL---VVPGGAIGLCRELASRLGGTAVVLDPARDIARL 90 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN--ALYADQQGKVIDYVGGLND 144 T DL GR + T D RRD+T N AL D ++ D GGL D Sbjct: 91 VLRGWTV---DLA--GRDGPSLET-----DLRRRDYTANAIALPLDDPPRLQDPTGGLAD 140 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRF-------FAHYGEKNIDSDGLVASIKAKKGL 197 L + + +A+ +L D LR+LR R A E I + L Sbjct: 141 LAAGRLAAVSEAN--LLADPLRLLRGVRLSHTLALPLAPRSEDWIRHH--------ARAL 190 Query: 198 KILSSERIWSEINKL 212 +S ER+++E+ KL Sbjct: 191 GQVSGERVFTELEKL 205 >gi|307136008|gb|ADN33864.1| poly(A) polymerase [Cucumis melo subsp. melo] Length = 439 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-----SKTRYKVIP 72 +L+ L K + +VGG VRD +++ +D DI T+ V RIF R+ + Sbjct: 73 VLNGLKKAGYEVYLVGGCVRDLILDRPPKDFDIITSAQLKEVSRIFLWCEIVGRRFPICH 132 Query: 73 TSISYGTIKII----CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 I GTI + K FD + + ++ F R WK + L+RDFTIN + Sbjct: 133 VHID-GTIVEVSSFSTSSKPFDRHLNSAAIEKSMNCEEIDFVR-WK-NCLQRDFTINGMM 189 Query: 129 ADQQGKVI-DYVGGLNDLR 146 D V+ DY+GG+ D+R Sbjct: 190 YDPYNNVVYDYLGGMEDIR 208 >gi|115458124|ref|NP_001052662.1| Os04g0395900 [Oryza sativa Japonica Group] gi|21742315|emb|CAD40772.1| OSJNBb0039F02.3 [Oryza sativa Japonica Group] gi|113564233|dbj|BAF14576.1| Os04g0395900 [Oryza sativa Japonica Group] gi|215767631|dbj|BAG99859.1| unnamed protein product [Oryza sativa Japonica Group] Length = 542 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 20/161 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------RYKVIPTSISYGTIKIIC 84 +VGG VRD +M + +D DI TT +V FS + R+ + + +++ Sbjct: 112 LVGGCVRDLIMKKTPKDFDIITTADLRQVKDTFSGSAVIVGRRFPICHVYENNSIVEVSS 171 Query: 85 RKKYF------DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVID 137 Y I T +S + Y + WK + RDFTIN L + K+ D Sbjct: 172 FNTYARGSTSNQIYTSKSPHCSKNDYIR------WK-NCQGRDFTINGLMFNPYAEKIYD 224 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 Y GG+ D++ ++ + A ED RILR R A G Sbjct: 225 YFGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLG 265 >gi|120612844|ref|YP_972522.1| metal dependent phosphohydrolase [Acidovorax citrulli AAC00-1] gi|166233836|sp|A1TUW0|CCA_ACIAC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|120591308|gb|ABM34748.1| metal dependent phosphohydrolase [Acidovorax citrulli AAC00-1] Length = 419 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 39/275 (14%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVM-RIFSKTRYKVIPTSISYGT-IKIICRKK 87 +VGGAVRD L+ V D D + PD + R F +P + + R++ Sbjct: 5 MVGGAVRDRLLGRPVNDRDWVVVGATPDDLAARGF-------LPVGRDFPVFLHPETREE 57 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQG----KVIDYVG 140 Y T R G VV T + D RRD TINA+ + +++D G Sbjct: 58 YALARTERKS--GRGYRGFVVDTAPDVTLEQDLSRRDLTINAMAVRGEDPAAWELVDPYG 115 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLK 198 G DL+ + ++ + DA ED +RILR RF A + + ++ + L+ + Sbjct: 116 GARDLQAKLLRHVTDAFR---EDPVRILRVARFAARFTDFSVAPETMALMREMVDAGEAA 172 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W EI + L P + G + + LD+L V + + + Sbjct: 173 DLVPERVWQEIARGLMEAAPSRMFEVLRGCGALAVLLPE-----LDRLWGVPQRAE-YHP 226 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293 ++D+ + ++ +L MA + P +R+ Sbjct: 227 EVDTGVHVMM---------VLDMAARLHAPLAVRF 252 >gi|303326776|ref|ZP_07357218.1| polyA polymerase family protein [Desulfovibrio sp. 3_1_syn3] gi|302862764|gb|EFL85696.1| polyA polymerase family protein [Desulfovibrio sp. 3_1_syn3] Length = 895 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 20/217 (9%) Query: 32 VGGAVRDSLMNLSVQDIDI---ATTILPDRVMRIFSKTRY----KVIPTSISYGTIKIIC 84 VGG VRD L++ QDID+ I + + R K + + + + K I Sbjct: 486 VGGFVRDLLLDRPNQDIDLVVEGNGIALAKALAAELNGRVREHQKFLTSVVIFHDSKGI- 544 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVG 140 + D+ T R + V K D RRDFTINAL + G+++D+ G Sbjct: 545 -ESRIDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTINALAVRLDSTPFGQLVDFFG 603 Query: 141 GLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGL 197 G D++ R I+ + H + +ED R LR RF Y + ++ L+ + + K + Sbjct: 604 GQRDIKERVIRVL----HTLSFVEDPTRCLRAVRFEQRYKFRIGPGAEKLIKNALSLKLM 659 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 LS R+++E + + ++P + GI + I Sbjct: 660 DRLSGARLFNEYQHICDEEDPPACFSRLDELGILQAI 696 >gi|149921747|ref|ZP_01910194.1| hypothetical protein PPSIR1_24634 [Plesiocystis pacifica SIR-1] gi|149817398|gb|EDM76871.1| hypothetical protein PPSIR1_24634 [Plesiocystis pacifica SIR-1] Length = 853 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 27/165 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSK--TRYKVIPT---------SI 75 KS IVGGA RD L L+ DID A+T+ D I + R P ++ Sbjct: 622 KSWIVGGATRDILRGLNPADIDFASTMPAIDSFNAIVEQGLARKNADPNDPNDLAIRRNV 681 Query: 76 SYGTIKIICRKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 +G++++ DI T D+I+ DG A + D+L RDFTINA+Y D G Sbjct: 682 PFGSVQVEA-----DIET-GLDIISTHDGHDASLRL----DLDALARDFTINAVYYDIDG 731 Query: 134 -KVIDYVG-GLNDLRNRTIKFIGDAHHRIL-EDYLRILRFFRFFA 175 ++D G GL DL + T++F+ +L + + + R+ R Sbjct: 732 DALVDPTGTGLADLASSTLRFVAGTPDEVLGAEPVMVARWMRMIG 776 >gi|289547935|ref|YP_003472923.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermocrinis albus DSM 14484] gi|289181552|gb|ADC88796.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermocrinis albus DSM 14484] Length = 506 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 44/255 (17%) Query: 10 FHDSDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMR---- 61 F+ S +I LL + D+ C +VGG VRD L+ V D+D+ T P ++ + Sbjct: 18 FYMSYFDDIARLLPR--DELCFVVGGWVRDRLLGEPVGYKIDVDLLVTCDPRKIAKDLAE 75 Query: 62 -------IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114 F K PT ++ ++I + FD + ++ I + Sbjct: 76 AIGGTYFEFEKKGLLRRPT-VATVILEIPPYRYRFDFSQIKGKDIE----------KALV 124 Query: 115 ADSLRRDFTINALYAD---------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 D L RDFT NA+ +Q + D G+ DL ++ + + + ED + Sbjct: 125 EDLLSRDFTANAMAVSLDDVLSIGAKQTIIYDPAHGVEDLEMGVLRPVSIKN--LEEDPV 182 Query: 166 RILRFFRFFAHYGEKNID--SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223 RILR R EK+++ D ++ K ++ S ERI E+ ++LE N A+ Sbjct: 183 RILRGVRLSV---EKDLELTEDFYQFVLRKKHIIRKASPERITVELLRILELPNSARALR 239 Query: 224 HMYNGGIFKEIFLDV 238 MY G+ +E+F D+ Sbjct: 240 EMYRLGLLQELFPDI 254 >gi|167568404|ref|ZP_02361278.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia oklahomensis C6786] Length = 413 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 26/201 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ L V+D D + P+++ K K P + T + + Sbjct: 6 VGGAIRDELLGLPVRDRDYVVVGATPEQMAAQGFKPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D RRD T+NA+ + G V+D Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLARRDLTVNAMAREVSPDGALVGPVVDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILR---FFRFFAHYGEKNIDSDGLVASIKAKKGL 197 G DLR + + +GDA ED +RILR F FA + ++ L+ + + Sbjct: 118 GQADLRAKVFRHVGDA---FAEDPVRILRVARFAARFADFAVAP-ETAVLMRKMVDAGEV 173 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ER+W E+ + L P Sbjct: 174 DALVPERVWQEVARGLMEGRP 194 >gi|148238570|ref|YP_001223957.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. WH 7803] gi|147847109|emb|CAK22660.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. WH 7803] Length = 415 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%) Query: 24 KGEDKSCIVGGAVRDSLMN-------LSVQDIDI----ATTILPDRVMRIFSKTRYKVIP 72 +G + +VGGAVRD+L + + D+D+ + + + + + R + Sbjct: 27 QGHGRLALVGGAVRDALRHQLHGASWQGLPDLDLVLEGSCSAVALGLQQRLGTERVSWLQ 86 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LY 128 YGT ++ D+ R + VV + D RRDFT+NA L Sbjct: 87 LHERYGTAELRLDGVLIDLAAARQECYPAPGENPVVQPGPLEDDLWRRDFTVNAMALVLQ 146 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 AD +++D GGL L R + + A + +D R++R R+ A G Sbjct: 147 ADGSQQLLDPHGGLAHLAARQLVLLHAAS--VADDPTRVIRAARYGARLG 194 >gi|167561186|ref|ZP_02354102.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia oklahomensis EO147] Length = 413 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 26/201 (12%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGA+RD L+ L V+D D + P+++ K K P + T + + Sbjct: 6 VGGAIRDELLGLPVRDRDYVVVGATPEQMAAQGFKPVGKDFPVFLHPDT--------HEE 57 Query: 91 ITTLRSDLITDGRYAKVVF--TRD--WKADSLRRDFTINALYADQQ------GKVIDYVG 140 R++ T Y F D + D RRD T+NA+ + G V+D Sbjct: 58 YALARTERKTAAGYHGFQFYYAPDVTLEQDLARRDLTVNAMAREVSPDGALVGPVVDPFD 117 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILR---FFRFFAHYGEKNIDSDGLVASIKAKKGL 197 G DLR + + +GDA ED +RILR F FA + ++ L+ + + Sbjct: 118 GQADLRAKVFRHVGDA---FAEDPVRILRVARFAARFADFAVAP-ETAVLMRKMVDAGEV 173 Query: 198 KILSSERIWSEINKLLEAKNP 218 L ER+W E+ + L P Sbjct: 174 DALVPERVWQEVARGLMEGRP 194 >gi|258406007|ref|YP_003198749.1| tRNA adenylyltransferase [Desulfohalobium retbaense DSM 5692] gi|257798234|gb|ACV69171.1| tRNA adenylyltransferase [Desulfohalobium retbaense DSM 5692] Length = 368 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 28/213 (13%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGG+VRD+ + QD D + D R F + + + + + + Sbjct: 5 LVGGSVRDAFLGRPRQDRDYVVLQTTEDEFKRCFPRAK------RVGRDSPVFLLDGDEY 58 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 +++ +D+ D + TRD ++L RD LYA Q + DL+ R Sbjct: 59 TVSSA-ADITAD------LETRDLTVNALARDVATGTLYAHPQAE--------TDLQRRV 103 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS---SERIW 206 ++ + A+ R D LR+ R RF A + E + SD L+A + +LS +ER+ Sbjct: 104 LRPVCAANFRA--DPLRVYRAARFAACWPEWRVHSD-LLAVMHEVGQAGLLSQPAAERVG 160 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 E+ + L+ P + + G F + Q Sbjct: 161 GEVRRALQGVRPGRFLSLIVQTGCLGAWFAEWQ 193 >gi|148244357|ref|YP_001219051.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Candidatus Vesicomyosocius okutanii HA] gi|146326184|dbj|BAF61327.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Candidatus Vesicomyosocius okutanii HA] Length = 354 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 + D RRD TINA+ A + ++ D G DL NR ++ + + LR+ RF + Sbjct: 87 EQDLSRRDLTINAI-AQKDDELFDPFNGQEDLNNRILRHVSNDFSEDPVRVLRVARFAAY 145 Query: 174 FAHYG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F ++G E ++ L+ + A + L+ ER++ E+NK L P + G ++ Sbjct: 146 FKNFGFEVEQETYQLMRQMVASGEVDSLTPERVFKELNKALSYGTPSAFFKVLTACGAYQ 205 Query: 233 EIF 235 ++F Sbjct: 206 KVF 208 >gi|220932275|ref|YP_002509183.1| poly(A) polymerase/tRNA nucleotidyl transferase [Halothermothrix orenii H 168] gi|219993585|gb|ACL70188.1| poly(A) polymerase/tRNA nucleotidyl transferase [Halothermothrix orenii H 168] Length = 478 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 51/222 (22%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF----SKTRYKVIPTSISYGTIKIICRK 86 +VGGAVRD L+ +++D D +L +RV + SKT +P +++ Sbjct: 32 LVGGAVRDILLQRNLKDFDF---VLKERVREVALDFSSKTGGSFVPLDRERDIYRVVADG 88 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---DQQGK--------- 134 +D +AK+V + K D RRDFTIN++ D G Sbjct: 89 YIYD-------------FAKMVGS-TLKEDLSRRDFTINSMAVNVMDIPGNFGNKEPYLI 134 Query: 135 -------VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDS 184 +ID GG DL I+ D ++D LR+LR FRF + G EK D+ Sbjct: 135 TEYINDYIIDPFGGWTDLEKGIIRVTDDKV--FIKDPLRLLRAFRFKSELGFLIEK--DT 190 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L+ +A ++ ++ ERI E +++L NP A V Y Sbjct: 191 ENLIH--RASPLIRKIARERIGYEFSRILS--NPGVARVVKY 228 >gi|300865327|ref|ZP_07110138.1| Phosphoesterase, RecJ-like protein [Oscillatoria sp. PCC 6506] gi|300336630|emb|CBN55288.1| Phosphoesterase, RecJ-like protein [Oscillatoria sp. PCC 6506] Length = 827 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 6/95 (6%) Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLN 143 + DI T R++ V + D RRDFTINAL + G+++D+ GGL Sbjct: 471 WVDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINALAVRLNHPRAGELLDFFGGLE 530 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 DL+ R I+ + + +ED RI R RF G Sbjct: 531 DLKGRKIRVL--HANSFIEDPTRIYRAVRFAVRLG 563 >gi|284050067|ref|ZP_06380277.1| polynucleotide adenylyltransferase region [Arthrospira platensis str. Paraca] gi|291566508|dbj|BAI88780.1| polyA polymerase [Arthrospira platensis NIES-39] Length = 918 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 36/182 (19%) Query: 31 IVGGAVRDSLM-----NLSVQDID-----------------IATTILPD-----RVMRIF 63 +VGG VRD L+ NL + DID I TTI P + + Sbjct: 490 LVGGGVRDLLLAEPTDNLLLHDIDLVVDGCYHNSTNNISDEITTTISPAVDLARSLQEYY 549 Query: 64 SKTRYKV---IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + R +V T+ + + DI T R++ V + D RR Sbjct: 550 PQARLEVHGQFQTAALLWHNHPVLNSLWIDIATARTEFYPYPAANPEVEASSIRQDLYRR 609 Query: 121 DFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL + G+++D+ GG+ DL R I+ + + +ED RI R RF Sbjct: 610 DFTINALALRLTEPKSGELLDFFGGVQDLELREIRVLHP--NSFIEDPTRIYRAVRFAVR 667 Query: 177 YG 178 G Sbjct: 668 LG 669 >gi|302392437|ref|YP_003828257.1| polynucleotide adenylyltransferase region [Acetohalobium arabaticum DSM 5501] gi|302204514|gb|ADL13192.1| Polynucleotide adenylyltransferase region [Acetohalobium arabaticum DSM 5501] Length = 888 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 8/153 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS-ISYGTIKIICRKKY- 88 IVGG VRD ++ + D DI + R ++ + +GT + R Sbjct: 491 IVGGFVRDLILGVENFDFDIVVEGNGIKFARELAEELEGEVIEEHQEFGTACVATRLGLK 550 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLND 144 D+ + R + V D K D RRDFT+NAL +++ GK+ID+ GG D Sbjct: 551 LDVASCRVEYYQSPGALPEVEASDLKQDLFRRDFTLNALAIKLNSERFGKLIDFFGGKED 610 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 L I+ + + ++D RI R RF Y Sbjct: 611 LEAGLIRIL--HNFSFIDDPTRIFRALRFVNRY 641 >gi|159902697|ref|YP_001550041.1| poly A polymerase family protein [Prochlorococcus marinus str. MIT 9211] gi|159887873|gb|ABX08087.1| Poly A polymerase family [Prochlorococcus marinus str. MIT 9211] Length = 397 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 22/216 (10%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 LN+ S +VGGAVRD+L+++ D+ I+P + + F+K S G Sbjct: 19 LNQLPAGSALVGGAVRDALLDVLQHKPDL-DLIVPSKAVE-FAKE------FSDREGGSC 70 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA--LYADQQGKVIDYV 139 ++ K+ DI L + T +V + D RRD+TINA L +ID Sbjct: 71 VVLDKER-DIARLVLNGWTIDLACQV--GNSLEEDLWRRDYTINAIALTLSNDPIIIDPT 127 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS---IKAKKG 196 GG+ DL + K + + +++D LR+LR FR + E D D + + I AK Sbjct: 128 GGILDLEKK--KLVAISQQNLIDDPLRLLRGFRLSS---ELRFDLDEMTKNFIKINAKL- 181 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 LK ++ ERI E+ +L+ I+ + G+ + Sbjct: 182 LKHVAPERIKGELERLVHGDWADQVILQIKKLGLLE 217 >gi|288575114|ref|ZP_06393471.1| CBS domain containing protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570855|gb|EFC92412.1| CBS domain containing protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 876 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 11/212 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-IPTSISYGTIKIICRKKYF 89 +VGG VRD L++ V D+D+ ++ + + V + GTI +K Sbjct: 479 VVGGVVRDLLLDRPVTDLDVVVEGDATGFIKSWERDGADVSLHGRFKTGTIAFPDGRK-V 537 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 D+ T R + V + K D RRDFT+NA+ + G +IDY GG D+ Sbjct: 538 DVATARREFYEFPTAQPTVSSDSLKHDLYRRDFTVNAMALSIGGETWGTLIDYFGGRRDI 597 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKILSSE 203 +R ++ + + +ED RI R R G ++D + L + + LS Sbjct: 598 LSRKLRTLHNLS--FVEDPTRIFRGVRLEQRLG-FDLDDNALRTMKNCVRGGLFGGLSGF 654 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 R+ SE+ L+ P + M G+++ +F Sbjct: 655 RLRSELEISLKEPRPWPIVKRMAELGLWEPLF 686 >gi|312143713|ref|YP_003995159.1| Polynucleotide adenylyltransferase region [Halanaerobium sp. 'sapolanicus'] gi|311904364|gb|ADQ14805.1| Polynucleotide adenylyltransferase region [Halanaerobium sp. 'sapolanicus'] Length = 548 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 91/405 (22%), Positives = 176/405 (43%), Gaps = 56/405 (13%) Query: 31 IVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY- 88 +VGG VRD L+ L + +D+D+ + KT+ + + T + + Y Sbjct: 161 LVGGQVRDLLIGLPLNKDLDLLIEGDLEEFFIHLKKTKGLEYDYNNKFSTGFLHNQYGYS 220 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLND 144 DI + R + +V D +D RRDFTIN L+ +++G V D+ G + D Sbjct: 221 IDIASCREEKYHFPGSLPLVEKADLFSDLYRRDFTINTLVMDLHPERRGIVYDFFGAIYD 280 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK---AKKGLKI-- 199 L+N+ + + + R +D LRILR RF I D +++ +KK LK+ Sbjct: 281 LKNKMLNVLHNYSFR--DDPLRILRGIRF-------QILKDFKLSAESVELSKKSLKLYD 331 Query: 200 ---LSSERIWSEINKLLEAKNPLNAIVHMYNGGI--FKEIFLDVQEISLDQLSQVIEAEQ 254 L+ ER+++E+ L +A+ ++ + I K I D Q + + + + ++ E+ Sbjct: 332 YQNLAVERVFAELKYLFKAQKDISQFSALLLNQIPVLKLIEADFQ-LDMKKDANFLKGEK 390 Query: 255 VFEWKIDS-------LLRFIVLISWQDKKSILS------MAKKFSLPREIRYFLISFFNC 301 + ++ L+R I+L +++ I AK FS + N Sbjct: 391 LLAISRENNFTVNHFLVRLIILFYNREESKIKQWPISEYEAKLFSHK--------EWENV 442 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + L P +K Y + +L + ++Y + F+ + S + + Sbjct: 443 DAKFYQLDDPALK---YRELESYQPEELIMAAVINY------EQQFVEAIFSHLQKRTEI 493 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 P+ G D++K G+ G ++ IL+ + + + + F+ Q L++ Sbjct: 494 KVPINGHDLLKMGLKQGPEIKEILLKVRDQILRNKFKDRQSALNY 538 >gi|282895920|ref|ZP_06303960.1| Polynucleotide adenylyltransferase region protein [Raphidiopsis brookii D9] gi|281199165|gb|EFA74034.1| Polynucleotide adenylyltransferase region protein [Raphidiopsis brookii D9] Length = 423 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 94/412 (22%), Positives = 169/412 (41%), Gaps = 47/412 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD ++ S +D+ I+PD +++ + I G + + ++ Sbjct: 27 MVGGAVRDGILGRSQDYLDL-DFIIPDNAVKV-----ARAIAQHYGAGFVLLDSKRNIAR 80 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRT 149 + + + + + + T D RRDFTINA+ Y +++D +GG D+ + Sbjct: 81 VVFPQGTVDFAQQDGESLLT-----DLHRRDFTINAIAYNPYTQELMDPLGGCKDIESGL 135 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEI 209 ++ I + + +D LR++R +R A I+ + + L ++SERI +E+ Sbjct: 136 LRMI--SPQNLQDDPLRLMRAYRQAAQLNFV-IEPHTQLTIRRLATNLCQVASERIRTEV 192 Query: 210 NKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF--EW-----KIDS 262 LL+ + + G+ + F+ S+D+L V A Q W K++ Sbjct: 193 GYLLQNAVGTFWLKTAWEDGLLGQFFIYATRESVDKLIAVDPAIQAIGENWSQLGEKLEK 252 Query: 263 LLRFIVLISWQD--KKSILSMAKKFSLPREIRYF---------LISFFNCNFNQKTLSIP 311 +R + W D K L RE+ +I+ K S Sbjct: 253 PIRDSMKTRWLDIAKLGCLVNPAPEIAERELGEMTYSRVEIRSVITALRLFPQMKQASSM 312 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH---YNNLTHQDTCFILQVL-------SDIIHWKKP 361 +++ +Y + + ++ I LAL +N + + + + L D++ P Sbjct: 313 SLREQYYWFREVGVVFSSTIVLALVQDIFNTKFQKHSLELYRPLVQRYLNPDDLVAHPSP 372 Query: 362 LFPLTGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 L +TG +V V IPP VG+IL SQ L L RKLI Sbjct: 373 L--VTGKEVIVALNIPPSPLVGDILQEIAIAQAEGKVNNSQGAL-ALARKLI 421 >gi|87123612|ref|ZP_01079463.1| Poly A polymerase family protein [Synechococcus sp. RS9917] gi|86169332|gb|EAQ70588.1| Poly A polymerase family protein [Synechococcus sp. RS9917] Length = 415 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 171/394 (43%), Gaps = 76/394 (19%) Query: 29 SCIVGGAVRDSLMN-LSVQ-DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGA+RD L+ L Q D+D+ ++P+ + + ++ + +G +++ Sbjct: 42 AALVGGAIRDGLIGRLRPQPDLDL---VVPENALELTARL-------AQEHGGARVV--- 88 Query: 87 KYFDITTLRSDLITDGRYAKVVFT--RDWKADSLRRDFTINA--LYADQQGKVIDYVGGL 142 D + L+ G + D +AD RRDF +NA L D Q +++D GGL Sbjct: 89 --LDAQRDMARLVLRGWTLDLARQDGADLEADLWRRDFRLNAIALVIDPQPQLLDPTGGL 146 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 +DLR + I A H +++D LR+LR R A ++D+ + + + L + Sbjct: 147 DDLRAGRLAAI--AEHNLIDDPLRLLRGVRLLAEL-PFSLDTATMAMLRRQRALLARAAP 203 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFK---------EIFLDVQEISLDQLSQVI--- 250 ERI +E+ +L+ +A+ + N + K L V+ LDQ + + Sbjct: 204 ERIQAELLRLVAGPQADHALEVLDNLQLLKPWQEREGPPPAALPVRGAGLDQAAAALNPD 263 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E +Q LLR + + +S+ K+ +R++L + TL+ Sbjct: 264 ERDQAL-----PLLRLTACLGDRGLQSLRFSKKQCQRCARLRHWLTRLEQAADD--TLAE 316 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD-----IIHWK---KPL 362 PE +L++ L L N+L ILQ+ ++ ++ W+ PL Sbjct: 317 PE---------------RLQLHLELE-NDL----PALILQLPAERRDHWLMRWRDGSDPL 356 Query: 363 F----PLTGDDVVK-YGIPPGKKVGNILVHCKQE 391 F L G + + +P G +G +L H K+E Sbjct: 357 FHPRAALDGRTLQRELELPQGPLLGRLLHHLKRE 390 >gi|218885462|ref|YP_002434783.1| CBS domain containing protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756416|gb|ACL07315.1| CBS domain containing protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1077 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 114 KADSLRRDFTINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRI 167 K D RRDFTINA L G+++D+ G D++++ I+ + H + +ED RI Sbjct: 665 KMDLYRRDFTINAQAVQLNGAHFGRLVDFFGAQRDMKDKVIRVL----HSLSFVEDPTRI 720 Query: 168 LRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 LR RF Y + + L+ + + LS R++ E+ + + K PL I M Sbjct: 721 LRAIRFEKRYDFRIGAQCERLIKNALQLGMMDRLSGARLFHELKLIFDEKAPLPCIRRME 780 Query: 227 NGGIFKEI--FLDVQEISLDQLSQVIEAEQVFEW 258 + I + I L + +D L+ E E+V W Sbjct: 781 DYDILRLIHPLLKLNPTKMDVLT---ELERVLHW 811 >gi|8809691|dbj|BAA97232.1| unnamed protein product [Arabidopsis thaliana] Length = 499 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 24/159 (15%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 L +KG D +VGG VRD ++ + +D DI T+ R + FS + S Sbjct: 90 LKSKGHDVY-LVGGCVRDLILKRTPKDFDILTSA-ELREVSSFSTSAQN------SSRNT 141 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYV 139 + C++ +DG + + L+RDFTIN L D KV+ DY+ Sbjct: 142 RTECKESSG----------SDGDEDCIRLN-----NCLQRDFTINGLMFDPYAKVVYDYL 186 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 GG+ D+R ++ + A +D RILR R A G Sbjct: 187 GGMEDIRKAKVRTVIHAGTSFHQDCARILRAIRIAARLG 225 >gi|297566620|ref|YP_003685592.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Meiothermus silvanus DSM 9946] gi|296851069|gb|ADH64084.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Meiothermus silvanus DSM 9946] Length = 426 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 30/231 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 + +VGGAVRD ++ +D+D + + + + P +++ Sbjct: 9 QGYLVGGAVRDLMLGKRPKDLDFVVPNPEEAARDLAHRLGGSIFPLDEKRRFWRVVAPGT 68 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 +D + L + D LRRDFT+NAL ++QG V+ DL + Sbjct: 69 TYDYAPMPQGL---------------EVDLLRRDFTLNALAVNEQGLVLGLPIARYDLEH 113 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLV---ASIKAKKGLKILSSE 203 R ++ I A+ + ED LR LR R G + ++G + A + G + + E Sbjct: 114 RLLRAIRKAN--LWEDPLRSLRAVRITLTAGLRLEPHTEGWIYEHAQYLRESG-ALPAWE 170 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 R+ E++++L ++P A+ G + + E+ L +L+ I EQ Sbjct: 171 RVGEELSQIL--RHPAAAV------GFLRLERAGLLEVYLPELAAGIGVEQ 213 >gi|150021303|ref|YP_001306657.1| CBS domain-containing protein [Thermosipho melanesiensis BI429] gi|149793824|gb|ABR31272.1| CBS domain containing protein [Thermosipho melanesiensis BI429] Length = 859 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 14/214 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-F 89 +VGG VRD + + DID+ + +K + + T + + + Sbjct: 471 VVGGFVRDLFLGIENFDIDLVVEGNGMEFAKYVAKQLDVKVVEHEKFLTASLFFKDGFRI 530 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDL 145 D+ T R++ V K D RRDFTINA L + + G + D+ G DL Sbjct: 531 DVATARTEYYDKPAELPKVDISTIKKDLYRRDFTINAMAIKLNSKEFGMLYDFFGSRKDL 590 Query: 146 RNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG--LKILS 201 I+ + H++ +ED R++R RF + + I+ + L + +G L+ ++ Sbjct: 591 EEGIIRVL----HKLSFVEDPTRMVRAVRFEQRF-DFRIEDETLEILKETLEGGYLERVT 645 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +RI E+ K+L+ K+P+ I + I IF Sbjct: 646 GQRIRQELEKILQEKDPVKGIKRLSELNILNRIF 679 >gi|319940764|ref|ZP_08015104.1| CCA-adding enzyme [Sutterella wadsworthensis 3_1_45B] gi|319805784|gb|EFW02560.1| CCA-adding enzyme [Sutterella wadsworthensis 3_1_45B] Length = 381 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 14/182 (7%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D RRD TINA+ G +ID GG +DL ++ + A ED +RILR RF A Sbjct: 92 DLARRDLTINAMALAPDGFIIDPFGGQHDLAAGILRHVSPA---FAEDPVRILRIARFAA 148 Query: 176 HYGEKNIDSD--GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 +I + L+ + L ER+ +E K L P + + G + Sbjct: 149 RLPSFSIAPETMALMRRMVDSGEADALVPERVLAEFTKGLRTATPCRMLDILTECGFCQR 208 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293 ++ +++ + QL + ++ + +D LL VL S I AK P R Sbjct: 209 LYPELRLSA--QLRGRLHRARLANFPVDLLL--AVLAS-----GIEGEAKNLKAPTPGRQ 259 Query: 294 FL 295 FL Sbjct: 260 FL 261 >gi|33239786|ref|NP_874728.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237312|gb|AAP99380.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 416 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 14/161 (8%) Query: 30 CIVGGAVRDSLMNL-------SVQDIDIA-TTILPDRVMRI---FSKTRYKVIPTSISYG 78 IVGG VRD L +L + +DID+ + D M++ K+ + + SY Sbjct: 37 AIVGGFVRDELSHLIHNESKHNFRDIDLVIEGSVKDFAMQLQKNLGKSNVIINRLNPSYL 96 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VID 137 TI++ D+ R + + + + D RRDFTIN++ D + K +ID Sbjct: 97 TIELKINDVAIDVARARIERYENLAENPKIAPSEINKDLFRRDFTINSIAFDLKSKELID 156 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 G+N + + I+FI D + ED R+ R R+ A G Sbjct: 157 PYEGINSISEKKIEFIHDKS--VSEDPTRVFRASRYSARLG 195 >gi|303249225|ref|ZP_07335461.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfovibrio fructosovorans JJ] gi|302489365|gb|EFL49317.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfovibrio fructosovorans JJ] Length = 390 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 37/201 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ V D D + P+ +R + + R Sbjct: 2 KRYLVGGAVRDILLGRPVMDQDYLIVDATPEAFVRRYRRARQV----------------G 45 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINALYADQQ----GKVIDYVG 140 K F + L S A+ + R D D L RD TINA+ G++ + Sbjct: 46 KTFPVFMLGS--------AQYAWPRGGDINEDLLARDLTINAIAMGDSRHIAGRLHFHPL 97 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 L+DLR+R ++ G+ + +D LR+ R RF A + + L+A ++A L Sbjct: 98 ALSDLRDRILRPCGEMS--MFDDPLRVYRAARFAASLPDFTAHPE-LIAQMRAVAACGAL 154 Query: 201 S---SERIWSEINKLLEAKNP 218 +ER+ E+ K L+A P Sbjct: 155 DDIFAERVAQEVRKALDAAKP 175 >gi|298491736|ref|YP_003721913.1| polynucleotide adenylyltransferase region ['Nostoc azollae' 0708] gi|298233654|gb|ADI64790.1| Polynucleotide adenylyltransferase region ['Nostoc azollae' 0708] Length = 423 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 53/242 (21%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR-KKYF 89 +VGGAVRD+++ S + +D+ I+PD IK+ C K++ Sbjct: 27 MVGGAVRDAILGRSAEYLDL-DFIIPD--------------------DAIKVACAIAKHY 65 Query: 90 DITTLRSDLITDGRYAKVVF---TRDW---KADSL-----RRDFTINAL-YADQQGKVID 137 + D + A+VVF T D+ + DSL RRDFTINA+ Y ++ID Sbjct: 66 QAGFVLLD--AERNIARVVFPHATVDFAQQEGDSLFTDLHRRDFTINAIAYNPHTQEIID 123 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSDGLVAS 190 + G D+ ++ I A+ + +D LR++R +R + G + NI + L A Sbjct: 124 PLQGYADIATGILRMISRAN--LQDDPLRLMRAYRQASQLGFTIEPSTQANIRT--LAAD 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 I ++ ER+ EI LL + ++ + G+ +F + ++ +L+ V Sbjct: 180 INQ------VAPERVRVEIGYLLASSQGTPWLISAWEDGLLSYVFQNAIHENVLKLTAVD 233 Query: 251 EA 252 +A Sbjct: 234 QA 235 >gi|326318865|ref|YP_004236537.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375701|gb|ADX47970.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 419 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 24/200 (12%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVM-RIFSKTRYKVIPTSISYGT-IKIICRKK 87 +VGGAVRD L+ V D D + PD + R F +P + + R++ Sbjct: 5 MVGGAVRDRLLGRPVNDRDWVVVGATPDDLAARGF-------LPVGRDFPVFLHPETREE 57 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD---WKADSLRRDFTINALYADQQG----KVIDYVG 140 Y T R G VV T + D RRD TINA+ + +++D G Sbjct: 58 YALARTERKS--GRGYRGFVVDTAPDVTLEQDLSRRDLTINAMAVRGEDPAAWELVDPYG 115 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLK 198 G DL+ + ++ + DA ED +RILR RF A + + ++ + L+ + Sbjct: 116 GARDLQAKLLRHVTDAFR---EDPVRILRVARFAARFTDFSVAPETMELMREMVEAGEAA 172 Query: 199 ILSSERIWSEINKLLEAKNP 218 L ER+W EI + L P Sbjct: 173 DLVPERVWQEIARGLMEAAP 192 >gi|328873083|gb|EGG21450.1| tRNA ADENILYL transferase [Dictyostelium fasciculatum] Length = 582 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 7/153 (4%) Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDY-VGGLNDLR 146 FD T LRS+ + + +DS RRD TIN+LY + +V DY + GL DL Sbjct: 213 FDFTGLRSEEYDEFSRIPNIVKGTLISDSHRRDITINSLYYNLMTTRVEDYTLMGLPDLE 272 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRF---FAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 N+ ++ + ED LR LR RF F+ E + ++ GLK+ S E Sbjct: 273 NKIVRTPLSPTLTLCEDPLRALRVLRFSNRFSFSIESQLYESLCSDRVRDLLGLKV-SRE 331 Query: 204 RIWSEINKLLEA-KNPLNAIVHMYNGGIFKEIF 235 R+ +E ++ + K+ + + + G+ IF Sbjct: 332 RVHTEFTSMMMSYKHAIPYFKTLVDTGLIHSIF 364 >gi|94264352|ref|ZP_01288144.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [delta proteobacterium MLMS-1] gi|93455246|gb|EAT05459.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [delta proteobacterium MLMS-1] Length = 509 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 54/254 (21%) Query: 1 MVSIVQHKWFHD--SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58 M + +H H ++L L+ + + I GGAVRD L +D+D T+ Sbjct: 1 MDATSRHPGLHSYPAELATALAGACGAQRELYIAGGAVRDWLRGCRSRDLDF--TVPAGG 58 Query: 59 VM---RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + R+ ++ + ++ + +++ R D + LR Sbjct: 59 IAFARRLAAQLQASLVILDPEHDLARVVWRDLDLDCSGLREKATG------------MAE 106 Query: 116 DSLRRDFTINALY---------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 D RRDFTINA+ QQ ++D GG DL I+ + D LR Sbjct: 107 DLRRRDFTINAMAVALEVRDKRCRQQPGLLDPTGGQQDLAAGIIRAVHPGA--FAADPLR 164 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKA-----------------------KKGLKILSSE 203 +LR +RF A + ++ + D V +KA ++ L +++E Sbjct: 165 LLRAYRFLAVFDDRAVAVDP-VTRVKATGNGRRRWRLAAATEVLIKDEVERQSLTTVAAE 223 Query: 204 RIWSEINKLLEAKN 217 RI +E++ +L A Sbjct: 224 RIRTELDAILLAPR 237 >gi|170077940|ref|YP_001734578.1| polyA polymerase family protein [Synechococcus sp. PCC 7002] gi|169885609|gb|ACA99322.1| polyA polymerase family protein [Synechococcus sp. PCC 7002] Length = 900 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 32/170 (18%) Query: 31 IVGGAVRDSLMN-----LSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 +VGGAVRD L++ L +QDID+ A L + + R V Sbjct: 486 LVGGAVRDVLLSDSDEELLLQDIDLVVDGFHTAADVGAGVTLANYICDRQPNARLSV--- 542 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T I+ K + DI T R++ V + D RRDF+INAL Sbjct: 543 HGEFQTAAILWHKDPVLGSLWLDIATARTEFYPYPAANPEVEASSIRQDLYRRDFSINAL 602 Query: 128 ----YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 + G+++D+ GGL DL+ R I+ + + +ED RI R RF Sbjct: 603 CLRLTEPRSGELLDFFGGLWDLKKRQIRVL--HANSFIEDPTRIYRAVRF 650 >gi|218508264|ref|ZP_03506142.1| poly(A) polymerase protein [Rhizobium etli Brasil 5] Length = 108 Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 ++L + WKKP FP+ G DV+ GIP G +VG +L + +W+ +F Sbjct: 45 KLLDRAMTWKKPQFPVNGADVIAAGIPSGPRVGELLGSLENQWVEENF 92 >gi|88807090|ref|ZP_01122602.1| Poly A polymerase family protein [Synechococcus sp. WH 7805] gi|88788304|gb|EAR19459.1| Poly A polymerase family protein [Synechococcus sp. WH 7805] Length = 421 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 26/206 (12%) Query: 27 DKSCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 D + +VGGAVRD L+N D+D+ ++P V+ I + +G + ++ Sbjct: 40 DGAILVGGAVRDGLLNRLPPCPDLDL---VIPGAVLGIVQG-------LARDHGGVCVV- 88 Query: 85 RKKYFDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTIN--ALYADQQGKVIDYV 139 D + L+ +G +A++ D + D RRDF +N AL + ++ D Sbjct: 89 ----LDEQRDMARLVLNGWTIDFARIEGN-DLREDLFRRDFKLNAIALSLSEPQQLFDPT 143 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GGL DL+N I I +++ R +D LR+LR R A E ID+D L + L Sbjct: 144 GGLKDLQNGLISAIRESNLR--DDPLRLLRALRLMAEL-EMRIDADTLAMMKANSQLLSQ 200 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHM 225 + ERI +E+ +L+ A AI M Sbjct: 201 SAPERIQAELLRLVSAPAADQAIALM 226 >gi|134298036|ref|YP_001111532.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1] gi|134050736|gb|ABO48707.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1] Length = 472 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 9/183 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD +N D+D T + + ++ + ++ ++++ Sbjct: 14 QTYLVGGAVRDLFLNKIPVDLDFCVTAKVFALAQTLTQQYQGSLVTLDDQREMLRVVTNS 73 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 + D + LR +++ K +F RD+ +++ ++ + Q ++ D GG DL+ Sbjct: 74 WHLDFSPLRDEIL-----EKDLFARDFTLNAMALPVSMGINKYNWQNQIQDPTGGKGDLK 128 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 ++ + I +D LR LR RF A Y I + +V + + ++ ++ ER+W Sbjct: 129 KGLLR--AASSSSIQQDPLRSLRGIRFAATYNLA-IIPETMVLLRQGTRRIEQIAGERLW 185 Query: 207 SEI 209 E+ Sbjct: 186 HEL 188 >gi|284929283|ref|YP_003421805.1| tRNA nucleotidyltransferase/poly(A) polymerase [cyanobacterium UCYN-A] gi|284809727|gb|ADB95424.1| tRNA nucleotidyltransferase/poly(A) polymerase [cyanobacterium UCYN-A] Length = 485 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 40/174 (22%) Query: 31 IVGGAVRDSLM-----NLSVQDIDIA--TTILPDRV-----MRIFSKTRYKVIPTSI--- 75 +VGG VRD + + +QDID+ + P + + K RY + ++ Sbjct: 70 VVGGIVRDLFLLKKNQKILIQDIDLVVDSNTSPSNIGAGIELAQTLKKRYPEVLLTVYHD 129 Query: 76 ------------SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 YG+++I DITT R++ + + D RRDFT Sbjct: 130 FKTASLSWNKDKKYGSVQI-------DITTSRTETYLYPSANPKIQIAPIEQDLFRRDFT 182 Query: 124 INAL----YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 INAL + QGK++D GL+DLR IK + + LED +RI R +F Sbjct: 183 INALAVKLTSPAQGKLLDLFMGLSDLRKAQIKVLHP--NSFLEDPIRIYRAVKF 234 >gi|189485066|ref|YP_001956007.1| CCA-adding tRNA nucleotidyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287025|dbj|BAG13546.1| CCA-adding tRNA nucleotidyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 481 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 28/221 (12%) Query: 32 VGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 GG RD L+ S DID+A + ++ +F+ K+I + + T +II Sbjct: 20 TGGFSRDLLLKRSPIDIDLAVSRNALKYSKKIADVFNS---KLITLNDTRKTYRII---- 72 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-------QQGKVIDYVG 140 L+ D+IT+ + + + K D RDFTINA + ++ ++ Sbjct: 73 ------LKDDVITNIDIS-LFNGKTIKQDLQNRDFTINATAFNLKNFKNFKKHIILSDRN 125 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 L DL+++ + + + D LR+LR FRF A K I IK K ++ Sbjct: 126 TLRDLKSKIVNTVSAESFKT--DPLRMLRAFRFAAELNFK-ISKKTFKQIIKNAKLIRQS 182 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + ERI +E ++L KN I M + G+ EIF +++++ Sbjct: 183 APERIKNEFFRVLSVKNSAALIKDMDDCGLLSEIFAEIKKM 223 >gi|237830923|ref|XP_002364759.1| tRNA nucleotidyltransferase, putative [Toxoplasma gondii ME49] gi|211962423|gb|EEA97618.1| tRNA nucleotidyltransferase, putative [Toxoplasma gondii ME49] gi|221507642|gb|EEE33246.1| poly(A) polymerase, putative [Toxoplasma gondii VEG] Length = 735 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 30/207 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------RYKVIPTSISYGTIK---- 81 GG VRD LMN DIDIA D+ + T R + +PT + G + Sbjct: 46 AGGWVRDKLMNRRSDDIDIAI----DKCTGVEFATNLNKWLRAQGLPTH-AIGVVASNPD 100 Query: 82 -------IICRKKY--FDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 CR + D LR++ ++ R + + D+ RRDFT+NAL+ + Sbjct: 101 QSKHLETATCRLAHHQVDFVHLRTETYSEHSRIPENIGFGTPAEDAHRRDFTLNALFYNL 160 Query: 132 QGKVID--YVGGLNDLRNRTIKF-IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 K ++ GL DLR R ++ + +A +L+D LR+LR R A + + Sbjct: 161 HTKKVENFTKTGLEDLRRRVLRTPLENARETLLDDPLRVLRGVRLAALLRLQLHEEVVTG 220 Query: 189 ASIKA-KKGL-KILSSERIWSEINKLL 213 A KA ++GL K +S ER+ E+ K+L Sbjct: 221 AQTKAVREGLKKKVSRERLGIELKKML 247 >gi|209524128|ref|ZP_03272679.1| Polynucleotide adenylyltransferase region [Arthrospira maxima CS-328] gi|209495503|gb|EDZ95807.1| Polynucleotide adenylyltransferase region [Arthrospira maxima CS-328] Length = 925 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 36/182 (19%) Query: 31 IVGGAVRDSLM-----NLSVQDIDIAT-----------------TILPD-----RVMRIF 63 +VGG VRD L+ NL + DID+ TI P + + Sbjct: 490 LVGGGVRDLLLAESTDNLLLHDIDLVVDGCYHNSTNNISDEATMTISPAVELARSLQEYY 549 Query: 64 SKTRYKV---IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + R +V T+ + + DI T R++ V + D RR Sbjct: 550 PQARLEVHGQFQTAALLWHNHPVLNSLWIDIATARTEFYPYPAANPEVEASSIRQDLYRR 609 Query: 121 DFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL G+++D+ GG+ DL R I+ + H +ED RI R RF Sbjct: 610 DFTINALALRLNEPNSGELLDFFGGVKDLELREIRVLHP--HSFIEDPTRIYRAVRFAVR 667 Query: 177 YG 178 G Sbjct: 668 LG 669 >gi|254413927|ref|ZP_05027696.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Microcoleus chthonoplastes PCC 7420] gi|196179524|gb|EDX74519.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Microcoleus chthonoplastes PCC 7420] Length = 926 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 34/177 (19%) Query: 31 IVGGAVRDSLM-----NLSVQDIDI------------ATTILPDRVMRIFSKTRYKVIPT 73 +VGGAVRD L+ L ++D+D+ A L + + R V Sbjct: 509 LVGGAVRDVLLADESQPLLLEDVDLVVDGFHRAADVGAGVTLAKALRERYPNARLDV--- 565 Query: 74 SISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++ T ++ + DI T R++ V + D RRDFTINA+ Sbjct: 566 HGAFQTAALLWHNDPVLDSLWIDIATARTEFYPYPAANPEVEASSIRQDLYRRDFTINAM 625 Query: 128 YADQQGK------VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 A G+ ++D+ GG+ DLR+R I+ + + +ED RI R RF G Sbjct: 626 AARLTGRRGEALPLLDFFGGMLDLRSRQIRVL--HANSFIEDPTRIYRAVRFAVRLG 680 >gi|221487856|gb|EEE26088.1| poly(A) polymerase, putative [Toxoplasma gondii GT1] Length = 735 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 105/243 (43%), Gaps = 40/243 (16%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------RYKVIPTSISYGTIK---- 81 GG VRD LMN DIDIA D+ + T R + +PT + G + Sbjct: 46 AGGWVRDKLMNRRSDDIDIAI----DKCTGVEFATNLNKWLRAQGLPTH-AIGVVASNPD 100 Query: 82 -------IICRKKYF--DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 CR + D LR++ ++ R + + D+ RRDFT+NAL+ + Sbjct: 101 QSKHLETATCRLAHHQVDFVHLRTETYSEHSRIPENIGFGTPAEDAHRRDFTLNALFYNL 160 Query: 132 QGKVID--YVGGLNDLRNRTIKF-IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 K ++ GL DLR R ++ + +A +L+D LR+LR R A + + Sbjct: 161 HTKKVENFTKTGLEDLRRRVLRTPLENARETLLDDPLRVLRGVRLAALLRLQLHEEVVTG 220 Query: 189 ASIKA-KKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 A KA ++GL K +S ER+ E+ K+L A KE QE S D Sbjct: 221 AQTKAVREGLKKKVSRERLGIELKKMLSNGTEDGA----------KEGLERTQETSGDPG 270 Query: 247 SQV 249 S+ Sbjct: 271 SET 273 >gi|124024238|ref|YP_001018545.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9303] gi|123964524|gb|ABM79280.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9303] Length = 415 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 19/180 (10%) Query: 16 INILSLLNK-----GEDKSCIVGGAVRDSLMNL-------SVQDIDI----ATTILPDRV 59 + +L++L + G + +VGGAVRD L++ + D+D+ + +L + Sbjct: 14 MGLLAVLQQVASEVGIKRLALVGGAVRDGLLHRVHFDPWRGLPDLDLVVEGSAVVLAKAL 73 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 + + +YGT++++ D+ T R + V + D R Sbjct: 74 RSHLGPEQLPQLRVHGAYGTVELVVDGVLLDLATARQETYASPGQNPQVTEGHLEEDLAR 133 Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NA+ + G ++D G L R + F+ + + +D R++R R+ A G Sbjct: 134 RDFTVNAMALELPGMTLLDPHDGWAALAMRQLVFLHS--NSVADDPTRVVRGARYAARLG 191 >gi|237803848|ref|ZP_04591433.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805453|ref|ZP_04592157.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025828|gb|EGI05884.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026560|gb|EGI06615.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 102 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D +RRD TINA+ D+ G + D G DL R ++ + A ED LR+LR RF A Sbjct: 18 DLIRRDLTINAMAEDKDGNLTDPYNGQRDLEARILRHVSPA---FAEDPLRVLRVARFAA 74 Query: 176 HYG 178 Y Sbjct: 75 RYA 77 >gi|317485019|ref|ZP_07943902.1| poly A polymerase head domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923757|gb|EFV44960.1| poly A polymerase head domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 387 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 30/217 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ + ++ D A D + + + S+S + R + F Sbjct: 16 LVGGAVRDRLLGRTPREYDFAFDA--DEATFLQRNPEARKVGKSVSV----FLLRGQEF- 68 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTI 150 L L D R RRD TINAL D+ G ++ + L+DLR + Sbjct: 69 -MPLEGTLEEDMR---------------RRDLTINALAEDRDGNLLGHPHALSDLREGIL 112 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS---SERIWS 207 + R ++ +R+ R R + + VA ++A G +L +ER+ Sbjct: 113 RPASPTSFR--DEPVRVFRLARMACELPSFTVHPEA-VAQMRAVVGEGLLGRIPAERVGR 169 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 E+ K L + P + + G F ++ E S+D Sbjct: 170 ELMKALASPKPSRWLSVLAEGNCLSPWFREL-ETSMD 205 >gi|66359190|ref|XP_626773.1| Cca1p, tRNA adenylyltransferase [Cryptosporidium parvum Iowa II] gi|46228193|gb|EAK89092.1| Cca1p, tRNA adenylyltransferase [Cryptosporidium parvum Iowa II] Length = 673 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 11/155 (7%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID--YVGGLNDLRN 147 D LRS+ T ++ + D+ RRDFTIN+++ + + I+ G+ DL N Sbjct: 160 DFVGLRSETYTLESRIPIITLGTAEEDAFRRDFTINSMFYNLNERKIEDLTCKGIEDLYN 219 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA----SIKAKKGLKILSSE 203 I+ D ++D LR LR FRF + + +D + L A SI KI S E Sbjct: 220 GIIRTPLDPMKTFIDDPLRALRAFRFTSRLHFR-VDEELLSACKDKSIHDALQAKI-SRE 277 Query: 204 RIWSEINKLLEAK---NPLNAIVHMYNGGIFKEIF 235 R+ +E+++++ K NP + + N + +F Sbjct: 278 RVGTEVHEMISNKYTGNPAIGLRLIINSNLVDSVF 312 >gi|320450640|ref|YP_004202736.1| tRNA nucleotidyltransferase [Thermus scotoductus SA-01] gi|320150809|gb|ADW22187.1| tRNA nucleotidyltransferase [Thermus scotoductus SA-01] Length = 828 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 92/405 (22%), Positives = 162/405 (40%), Gaps = 68/405 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV------IPTSISYGTIKI-I 83 +VGGAVRD+L++ S D+D+ + +R+ R+ V ++GT ++ + Sbjct: 462 LVGGAVRDALLDRSGPDLDLVL----EPGVRVGEVARFLVERFGGSFGLHYAFGTARVHV 517 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142 D+ R ++ V D RRD+T+NA+ +++D GGL Sbjct: 518 SFGLTVDLAESREEVYPYPGALPQVRPAPIAKDLERRDYTVNAMALSLATLELLDPYGGL 577 Query: 143 NDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLK 198 DLRNR ++ + H + +ED RI+R R A + + L A A + LK Sbjct: 578 EDLRNRLLRPL----HPLSFVEDPSRIVRGARLAARLAFR-FSEEALKALPPALLPEVLK 632 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV----IEAEQ 254 S R+ E+ LE L A+ + G ++ ++ D ++ +E E Sbjct: 633 GASKSRLRDELFLTLEEDTFLEALSLLEELGALGPLY-GLKLPPRDPFVRLRWGPLEDEG 691 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 + R ++L+ +Q+ L A LP+ ++ L ++ + Sbjct: 692 FPPGRARVEARLLLLLYFQENP--LEKALALGLPKRLQEALALLLKGSWEEV-------- 741 Query: 315 KLFYLYGDKVMIAK---LKIFLALHYNN---LTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 DK + K ++FLAL LT + L G Sbjct: 742 -------DKEALGKEPLRRVFLALFPEKEGWLTEKRRV------------------LMGR 776 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 D+++ G+ PG +VG IL + + +E+L L R+LI Sbjct: 777 DLLQLGLKPGPRVGEILRQVAEARARGEVRTFEEEL-ALARRLIG 820 >gi|113475129|ref|YP_721190.1| polynucleotide adenylyltransferase region [Trichodesmium erythraeum IMS101] gi|110166177|gb|ABG50717.1| Polynucleotide adenylyltransferase region [Trichodesmium erythraeum IMS101] Length = 909 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 27/173 (15%) Query: 31 IVGGAVRDSLMN-----LSVQDIDIATTILPDRVMRI-----FSKTRYKVIPTSIS--YG 78 ++GG VRD L++ L + DID+ + + K K+ PT+ +G Sbjct: 491 LIGGGVRDLLLSEFDETLLLTDIDLVVDTCRSKSVANAPAVNLGKALQKIYPTARLEIHG 550 Query: 79 TIK---------IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + ++ + DI T R++ V + D RRDFTINAL A Sbjct: 551 QFQTAALLWHHDLVLDSLWIDIATARTEFYPYPAANPEVEVSSIRQDLYRRDFTINALAA 610 Query: 130 ----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 G+++D+ GGL DL+ + I+ + + +ED RI R RF G Sbjct: 611 RLTKPGTGELLDFFGGLLDLQQKQIRVL--HANSFIEDPTRIYRAVRFAVRLG 661 >gi|219113865|ref|XP_002186516.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583366|gb|ACI65986.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 729 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 8/126 (6%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRD TINAL+ + G+V D+ G G +DLR + +L+D LR LR RF Sbjct: 276 DAFRRDLTINALFYNVNSGQVEDWTGRGFDDLRKGVVATPLPPLTTLLDDPLRALRSVRF 335 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKIL----SSERIWSEINKLLEAKNPLNAIVHMYNGG 229 A + D LVA+ K K L S ER+ E++ +L + +P+ A+ + N Sbjct: 336 AARL--RFTMDDELVAAAKDKSVRNALAQKVSRERVGGELDLMLRSPDPVGAMRLLINLR 393 Query: 230 IFKEIF 235 + +F Sbjct: 394 LIDTVF 399 >gi|328952235|ref|YP_004369569.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfobacca acetoxidans DSM 11109] gi|328452559|gb|AEB08388.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfobacca acetoxidans DSM 11109] Length = 503 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 37/228 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI-----SYGTIKI 82 K +VGGAVR+ L+ D+D+A DR + + I S + ++ Sbjct: 37 KVYLVGGAVRELLLGRETHDLDLAV----DRQALEVGQELAQTIGGSYVLLDEREKSARV 92 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA-------LYADQQGKV 135 + + + D+T R+ D D +RDFT+NA L ++ Sbjct: 93 VWQGRELDLTEFRAP--------------DLPGDLRKRDFTLNAMAIPLEELLDPSTPQI 138 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG DL ++ + L+D LR+LR FRF A +G D + + + Sbjct: 139 IDPWGGRADLTAGRLQLL--LPENFLDDPLRLLRAFRFAATHG---FDLSPQLRRVIQRY 193 Query: 196 GLKILSS--ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 G I ++ ER E+ +LL A + M G + +++++ Sbjct: 194 GPAIATAAGERQRQELFRLLSAPRAHPVLRLMDQLGFLGHLLPELEDM 241 >gi|169611692|ref|XP_001799264.1| hypothetical protein SNOG_08960 [Phaeosphaeria nodorum SN15] gi|160702347|gb|EAT84128.2| hypothetical protein SNOG_08960 [Phaeosphaeria nodorum SN15] Length = 875 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D++RRD TINA++ + +V D+ G ND+ + I+ + +D LR+LR Sbjct: 209 EEDAMRRDATINAMFYNLHTCEVEDFTQQGFNDMAAKLIRTPLEPTQTFKDDPLRVLRLI 268 Query: 172 RFFAHYGEK-NIDSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF + ++ + + + LKI +S ER+ E+ K+L P A+ + G Sbjct: 269 RFASRLDYVIEAETAKAMGDPEIQDVLKIKISRERVGIELEKMLRGPRPRMALELIDRFG 328 Query: 230 IFKEIFLDVQEI 241 ++K +F D + Sbjct: 329 LYKTVFTDPTRV 340 >gi|312879908|ref|ZP_07739708.1| CBS domain containing protein [Aminomonas paucivorans DSM 12260] gi|310783199|gb|EFQ23597.1| CBS domain containing protein [Aminomonas paucivorans DSM 12260] Length = 871 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 16/232 (6%) Query: 14 DLINILSLLNKGEDKSCI-VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-I 71 D + L + +G+ +GG VRD L+ QD+D+ + F + +V + Sbjct: 461 DRLRALGRVAQGQGARLFGIGGFVRDLLLGRPNQDVDLVVEGDAVAFLESFKGSDVRVSV 520 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----L 127 GT+ + + D+ T R + V + K D RRDF++NA L Sbjct: 521 HRRYRTGTL-VFPEGQKIDVATARREFYEYPVAPPTVSSDSLKHDLYRRDFSVNAMALSL 579 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA----HYGEKNID 183 G+++DY GG DL R ++ + + +ED R+LR R H G+ D Sbjct: 580 NPATWGELVDYFGGRVDLERRLLRVLHNLS--FVEDPTRVLRGVRLERRLRFHMGD---D 634 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 ++ L + L +LS R+ SE+ +L + V + + G+ + +F Sbjct: 635 TEKLARNCVRGGLLSLLSGPRLRSELELILLEPEAASMAVRLRDLGVLEGVF 686 >gi|300865343|ref|ZP_07110154.1| polynucleotide adenylyltransferase region [Oscillatoria sp. PCC 6506] gi|300336646|emb|CBN55304.1| polynucleotide adenylyltransferase region [Oscillatoria sp. PCC 6506] Length = 418 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 21/194 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 + +VGGAVRD+L+ + +D+ D VM + + I G + + ++ Sbjct: 24 PAYLVGGAVRDALLGRVSEYLDL------DFVMLAPAVKTARKIANLYQAGFVLLDAERQ 77 Query: 88 YFDITTLRSDLITDGRYAKVVFTR--DWKADSLRRDFTINAL-YADQQGKVIDYVGGLND 144 + ++ +G A + +AD RRDF +NA+ Y G++ID V G D Sbjct: 78 I-------ARVVFEGATADFAQAEGGNLEADLGRRDFRLNAIAYNPFTGEIIDPVDGQAD 130 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSER 204 L+ R I+ + A+ R +D LR+LR +R A + I + + L ++ ER Sbjct: 131 LQARIIRMVSPANLR--DDPLRLLRAYRQAAQL-DFAIAPETHATIRELAPLLSQVAVER 187 Query: 205 IWSEINKLLEAKNP 218 + SE+ LL NP Sbjct: 188 VRSELGYLL--NNP 199 >gi|159902870|ref|YP_001550214.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9211] gi|159888046|gb|ABX08260.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9211] Length = 421 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 16/167 (9%) Query: 23 NKGEDKSCIVGGAVRDSLMN-------LSVQDIDI----ATTILPDRVMRIFSKTRYKVI 71 N G + IVGG +RD +++ +DID+ L ++ I + + Sbjct: 29 NVGIKRVAIVGGILRDHIIHSFEKEPLTKFEDIDLVIEGPVKELATQIRLILGSDKVIIT 88 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 S S+ TI++ FD +T R++ + VF + + D +RRDF INA+ + Sbjct: 89 RESSSFKTIQLKIGDTLFDFSTARTESYSAPGENPQVFNCNIEEDLIRRDFPINAMALEL 148 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHR-ILEDYLRILRFFRFFAH 176 ID G D+ R +KF+ H + + +D RI+R R+ + Sbjct: 149 INNTFIDIFQGREDISKRKLKFM---HSKSVSDDPTRIIRGARYASR 192 >gi|58699324|ref|ZP_00374104.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58534160|gb|EAL58379.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 148 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 30/44 (68%) Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 P FPL+GDD++ G PGK +G L KQ W +SS+ L++E+L Sbjct: 97 PKFPLSGDDLISIGHQPGKSLGRNLELLKQHWEDSSYTLTKEEL 140 >gi|94266115|ref|ZP_01289830.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [delta proteobacterium MLMS-1] gi|93453312|gb|EAT03752.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [delta proteobacterium MLMS-1] Length = 509 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 52/253 (20%) Query: 1 MVSIVQHKWFHD--SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58 M + +H H ++L L+ + + I GGAVRD L +D+D T+ Sbjct: 1 MDATSRHPGLHSYPAELATALAGACGAQRELYIAGGAVRDWLRGCRSRDLDF--TVPAGG 58 Query: 59 VM---RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + R+ ++ + ++ + +++ R D + LR Sbjct: 59 IAFARRLAAQLQASLVILDPEHDLARVVWRDLDLDCSGLREKAT------------GMAE 106 Query: 116 DSLRRDFTINALY---------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 D RRDFTINA+ QQ ++D GG DL I+ + D LR Sbjct: 107 DLRRRDFTINAMAVALEVRDKRCRQQPGLLDPTGGRQDLAAGIIRAVHPGA--FAADPLR 164 Query: 167 ILRFFRFFAHYGEKNIDSD---GLVASIKAKK-------------------GLKILSSER 204 +LR +RF+A + ++ +D G+ A+ ++ L +++ER Sbjct: 165 LLRAYRFWAVFDGQSPAADPVTGVEATGNGRRRWRLAAATEVLIKDEVERQSLTTVAAER 224 Query: 205 IWSEINKLLEAKN 217 I +E++ +L A Sbjct: 225 IRTELDAILLAPR 237 >gi|55980894|ref|YP_144191.1| poly(A) polymerase family protein [Thermus thermophilus HB8] gi|55772307|dbj|BAD70748.1| poly(A) polymerase family protein [Thermus thermophilus HB8] Length = 431 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 22/186 (11%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ D+D A + + P G +++ ++ D Sbjct: 14 VGGAVRDLLLGRRPTDLDYAALDPEGAAEEAKRRLGGSLFPLDPKRGHYRLVVGERTLDF 73 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 T L L + D LRRD+ +NAL + G V G DLR R + Sbjct: 74 TPLEGRL---------------EEDLLRRDYRVNALLW-KGGAVFGLKGVEEDLRRRLLV 117 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSERIWS 207 + + + + +D+LR LR R A G ++ ++ G A + + ER+ Sbjct: 118 PVREEN--LYQDHLRSLRGVRLAATLGFGLPQRTREALGRHARFLQAHPEALPARERVKE 175 Query: 208 EINKLL 213 E+ +LL Sbjct: 176 ELARLL 181 >gi|167949026|ref|ZP_02536100.1| polyA polymerase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 127 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 6/121 (4%) Query: 36 VRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIPTSISYGTIKIICRKKYFD 90 +RD L+ +D D+AT P++V ++F R +++ I++ + D Sbjct: 1 MRDLLLGREPKDFDVATDARPEQVRQVFRNCRLIGRRFRLAHVHFGREIIEVATFRSMGD 60 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRT 149 + +G + D+ RRDFTINALY D + V+DY G+ DLR Sbjct: 61 GEQQDQRQVENGMILRDNVYGTIDEDAQRRDFTINALYYDIEDFSVLDYANGMQDLRRGP 120 Query: 150 I 150 I Sbjct: 121 I 121 >gi|282899755|ref|ZP_06307718.1| Polynucleotide adenylyltransferase region protein [Cylindrospermopsis raciborskii CS-505] gi|281195370|gb|EFA70304.1| Polynucleotide adenylyltransferase region protein [Cylindrospermopsis raciborskii CS-505] Length = 423 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 17/227 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD ++ S +D+ I+PD +++ + I + G + + ++ Sbjct: 27 MVGGAVRDGILGRSQDYLDL-DFIIPDNAVKV-----ARAIAQNYGAGFVLLDGKRNIAR 80 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRT 149 + + + + + + T D RRDFTINA+ Y +++D +GG D+ + Sbjct: 81 VVFPQGTVDFAQQDGESLLT-----DLHRRDFTINAIAYNPYTQELMDPLGGCKDIESGL 135 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI-LSSERIWSE 208 ++ I + + +D LR++R +R A + A+I+ + ++SERI +E Sbjct: 136 LRMI--SPQNLQDDPLRLMRAYRQAAQL--NFVIEPHTQATIRNLSSIFCQVASERIRTE 191 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + LL++ + + G+ + F+ S+D+L V A Q Sbjct: 192 VGHLLQSAVGTFWLKTAWEDGLLGQFFIYATRESVDKLIAVDPAVQA 238 >gi|67624801|ref|XP_668683.1| tRNA adenylyltransferase -related [Cryptosporidium hominis TU502] gi|54659898|gb|EAL38459.1| tRNA adenylyltransferase -related [Cryptosporidium hominis] Length = 533 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 15/157 (9%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID--YVGGLNDLRN 147 D LRS+ T ++ + D+ RRDFTIN+++ + + I+ G+ DL N Sbjct: 160 DFVGLRSETYTLESRIPIITLGTAEEDAFRRDFTINSMFYNLNERKIEDLTCKGIEDLYN 219 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLVA----SIKAKKGLKILS 201 I+ D ++D LR LR FRF + H+ +D + L A SI KI S Sbjct: 220 GIIRTPLDPMKTFIDDPLRALRAFRFTSRLHF---RVDEELLSACKDKSIHDALQTKI-S 275 Query: 202 SERIWSEINKLLEAK---NPLNAIVHMYNGGIFKEIF 235 ER+ +E+++++ K NP + + N + +F Sbjct: 276 RERVGTEVHEMISNKYTGNPAIGLRLIINSNLVDSVF 312 >gi|94984719|ref|YP_604083.1| metal dependent phosphohydrolase [Deinococcus geothermalis DSM 11300] gi|94555000|gb|ABF44914.1| metal dependent phosphohydrolase [Deinococcus geothermalis DSM 11300] Length = 433 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 37/252 (14%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI-ICRKK 87 + +VGGA RD L ++ +D D A + ++ P + G ++ + Sbjct: 15 ALLVGGAARDWLRGVAPKDFDWAVPKPEQAAGVLAAQVGGLAFPLDEARGYWRVHVPGGV 74 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 D L +D +TD D LRRDFT+NA+ G+++D GG +DLR Sbjct: 75 QHDFVPLPAD-VTD--------------DLLRRDFTVNAIALTADGQLLDPAGGRDDLRA 119 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIK---AKKGLKILSSE 203 R ++ + + + R +D LR R RF G + + ++ V + A L++ + E Sbjct: 120 RRLRMVSEMNLR--DDPLRAWRAVRFEVTLGLRLDPATEAAVRRVAADLAAGQLQLPAPE 177 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ-------VF 256 R+ E+ LL +I+ + G+ +SL +L + I Q VF Sbjct: 178 RVRDELQALLAHPQAAPSILRLEALGLLA--------LSLPELREGIGVPQGGFHHLDVF 229 Query: 257 EWKIDSLLRFIV 268 E +++L + + Sbjct: 230 EHALEALHQLLA 241 >gi|239813995|ref|YP_002942905.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Variovorax paradoxus S110] gi|259585857|sp|C5CNM3|CCA_VARPS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|239800572|gb|ACS17639.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Variovorax paradoxus S110] Length = 419 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 42/216 (19%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-----------IATTILPDRVMRIFSKTRYKVIPTSIS 76 K+ +VGGA+RD L+ V D D A LP V R F + + Sbjct: 2 KTYLVGGALRDRLLGRPVSDHDWLVVGATPEEMAARGYLP--VGRDFPVFLHPQTREEYA 59 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL--------- 127 + Y T S +T + D RRD T+NA+ Sbjct: 60 LARTERKSAPGYRGFTVHASPDVT------------LEQDLARRDLTVNAIALPAEFVGT 107 Query: 128 ---YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 + GK+ D G DL ++ ++ + DA ED +RILR RF A + + ++ Sbjct: 108 DGRFEPDAGKLADPFHGRRDLEHKLLRHVTDA---FREDPVRILRVARFAARFDDFSVAP 164 Query: 185 D--GLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 + L+ + L ER+W E+++ L P Sbjct: 165 ETMALMREMVQAGEADALVPERVWQELSRGLMETRP 200 >gi|254424062|ref|ZP_05037780.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Synechococcus sp. PCC 7335] gi|196191551|gb|EDX86515.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Synechococcus sp. PCC 7335] Length = 417 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 90/189 (47%), Gaps = 23/189 (12%) Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILP----DRVMRIFSKTRYKVIPTSISYGTIKI 82 D++ +VGG+VRD L+ +D+ +LP + + + + + + + ++ Sbjct: 18 DETYLVGGSVRDQLLQRRSNYLDL-DLVLPYQSIETALALAKRYKAGFVVLDEARQIARV 76 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGG 141 + + D + D I D D RRDFT+NA+ D + +ID + G Sbjct: 77 VFDQVTIDFAQQQGDHIED--------------DLRRRDFTVNAIAFDPHSQELIDPLDG 122 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL N+ ++ + ++ + +D LR++R +R A + ++++ A + L+ +S Sbjct: 123 QIDLDNKILRMV--SYQNLADDPLRLMRAYRQAAQL-DFTLENETQTAIGQLSPKLQQIS 179 Query: 202 SERIWSEIN 210 ER+ SE++ Sbjct: 180 MERVRSELD 188 >gi|225174788|ref|ZP_03728786.1| Polynucleotide adenylyltransferase region [Dethiobacter alkaliphilus AHT 1] gi|225169915|gb|EEG78711.1| Polynucleotide adenylyltransferase region [Dethiobacter alkaliphilus AHT 1] Length = 472 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 31/181 (17%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS---KTRYK 69 + L+ + L K + + IVGG VRD+L + D+D+ T ++ + + + Y+ Sbjct: 3 TKLLALADLAQKEQKEIYIVGGFVRDALRGIPSWDVDLVVTEEAEQFAKRAAWRMRGEYE 62 Query: 70 VIPTSISYGTIKIIC---RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ + Y I ++ R D+T + + D D RRDFT+NA Sbjct: 63 MLDSQSQYSRIFLVASDGRPFSLDLTLVHGGKLED--------------DLKRRDFTVNA 108 Query: 127 L---------YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 + D Q VID GG DL ++ + IL D +R+ R RF Sbjct: 109 MAVSLNNYLHAPDWQESVIDPCGGKEDLHVGRLRLTTE--ECILRDPVRLFRSARFLLRL 166 Query: 178 G 178 G Sbjct: 167 G 167 >gi|226355439|ref|YP_002785179.1| nucleotidyltransferase [Deinococcus deserti VCD115] Length = 396 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%) Query: 115 ADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF- 173 AD LRRDFT+NAL +V+D G DLR + ++ + + + D LR+ R RF Sbjct: 50 ADLLRRDFTVNALALTADRQVLDPAQGQQDLRTKQLRMV--SADNLWADPLRVWRAARFE 107 Query: 174 ------FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 E+ + V + A L + ++ERI E++ LL N I + + Sbjct: 108 VTLRFRLEAETERTVRE---VTTALASGRLSMPAAERIRDELHALLSHPNSALGIQRLED 164 Query: 228 GGIFKEIFLDVQE 240 G+ +++E Sbjct: 165 LGLLSLTMPELRE 177 >gi|325119871|emb|CBZ55424.1| hypothetical protein NCLIV_058470 [Neospora caninum Liverpool] Length = 768 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 30/207 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT------RYKVIPTSISYGTIK---- 81 GG VRD LM DIDIA D+ + T R + +PT + G + Sbjct: 46 AGGWVRDKLMKRRSDDIDIAI----DKCTGVEFATNLNSWLRAQGLPTH-AIGVVASNPD 100 Query: 82 -------IICR--KKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQ 131 CR D LR++ ++ R + V + D+ RRDFT+NAL+ + Sbjct: 101 QSKHLETATCRLANHQVDFVHLRTETYSEHSRIPENVGFGTPEEDAQRRDFTLNALFYNL 160 Query: 132 QGKVID--YVGGLNDLRNRTIKF-IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 K ++ GL DLR R ++ + +A +L+D LR+LR R A + D Sbjct: 161 HTKKVENFTKTGLEDLRRRVLRTPLENAKETLLDDPLRVLRGVRLAALLRLQLHDEVVKG 220 Query: 189 ASIKA-KKGL-KILSSERIWSEINKLL 213 A +A ++GL K +S ER+ E+ K+L Sbjct: 221 AQTRAVREGLRKKVSRERLGIELKKML 247 >gi|87123153|ref|ZP_01079004.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. RS9917] gi|86168873|gb|EAQ70129.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. RS9917] Length = 398 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 20/164 (12%) Query: 30 CIVGGAVRDSLMN-------LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS------ 76 +VGGAVRD+L++ + D+D+ ++ R+ R ++ P +S Sbjct: 18 ALVGGAVRDALLHHEHRDPWRGLPDLDL---VVEGSSERLAHGLRQQLGPERVSELRVHG 74 Query: 77 -YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 +GT++++ D+ R + VV D RRDF++NA+ Sbjct: 75 RFGTVEMVVDGVLLDLAQARQERYPAPGENPVVEPGPLPQDLARRDFSVNAMALLLSDGS 134 Query: 136 IDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + GG L R + F+ + + +D R++R R+ A G Sbjct: 135 LLDPHGGRQHLAQRQLAFLHPSS--VADDPTRVIRAARYAARLG 176 >gi|113954933|ref|YP_731793.1| polyA polymerase [Synechococcus sp. CC9311] gi|113882284|gb|ABI47242.1| polyA polymerase family protein [Synechococcus sp. CC9311] Length = 386 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 69/298 (23%), Positives = 123/298 (41%), Gaps = 45/298 (15%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPD---RVMRIFSKTRYKVIPTSISYGTIKIICR 85 + +VGGAVRD L+N + D+ + D +V ++ + + +++ Sbjct: 25 TVLVGGAVRDGLLNRLPEHPDLDMVVPADALGQVRKLSQEFGGSCVVLDRDRDMARLVLG 84 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN--ALYADQQGKVIDYVGGLN 143 + D+ D +T AD +RRD+ IN AL + K++D GG+ Sbjct: 85 RWTIDLARQEGDALT--------------ADLMRRDYRINAIALTLTTEPKLVDPSGGIP 130 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 DLR++ I I H + L D L + ID L + + L ++ E Sbjct: 131 DLRDQRITAI---HEQNLLDDPLRLLRAIRLSSELSMTIDQGTLEMIARHRHQLPKVAPE 187 Query: 204 RIWSEINKLLEAKNPLNAIVHMYN------------GGIFKEIFLDVQE----ISLDQLS 247 RI +E+ KL++A N AI +++ F L +E + L +L+ Sbjct: 188 RIQAELLKLVQANNADQAIHLLHSLKLIAPWSSNQPQKTFNARALTAEEQQLALPLARLT 247 Query: 248 QVIEAEQVFEWKID--SLLRFIVLISW-----QDKKSILSMAKKFSLPREIRYFLISF 298 Q++ + V + + + R + L +W Q S LS ++ L E+ L +F Sbjct: 248 QLLSDQGVNDLRFSRKQIQRCLRLRAWWKRDQQQSASTLSERERLKLHEELEEDLPAF 305 >gi|332704141|ref|ZP_08424229.1| Polynucleotide adenylyltransferase region [Desulfovibrio africanus str. Walvis Bay] gi|332554290|gb|EGJ51334.1| Polynucleotide adenylyltransferase region [Desulfovibrio africanus str. Walvis Bay] Length = 902 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 38/236 (16%) Query: 13 SDLINILSLLNKGEDKSCI----VGGAVRDSLMNLSVQDIDIATT------------ILP 56 D++ IL+L K D+ VGG VRD L+ DID+ +L Sbjct: 466 EDILGILTLAGKLADEDGFEVFAVGGFVRDILLRQPNFDIDLVAEGDGIAFAYKLAGVLG 525 Query: 57 DRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116 RV + K + VI I+ + D+ T R + VV K D Sbjct: 526 GRV-KAHHKFKTAVI----------ILPNGQRIDVATARLEYYEYPAALPVVELSSIKMD 574 Query: 117 SLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRF 170 RRDFTINAL + G + D+ G D++++ I+ + H + +ED RILR Sbjct: 575 LYRRDFTINALAVHLNPGRFGLLEDFFGAQRDIKDKIIRVL----HSLSFVEDPTRILRA 630 Query: 171 FRFFAHYGEK-NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 RF + + ++ L+ + + LS RI+ E+ + + +N L + M Sbjct: 631 IRFEQRFEFRIGGQTERLIRNAVQMTFFQKLSGTRIFHELRLIFDERNALRCLRRM 686 >gi|46198864|ref|YP_004531.1| poly(A) polymerase/tRNA nucleotidyl transferase [Thermus thermophilus HB27] gi|46196487|gb|AAS80904.1| poly(A) polymerase/tRNA nucleotidyl transferase [Thermus thermophilus HB27] Length = 434 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ D+D A + + P G +++ ++ D Sbjct: 17 VGGAVRDLLLGRRPTDLDYAALDPEKAAEEAKRRLGGSLFPLDPKRGHYRLVVGERTLDF 76 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 T L L + D LRRD+ +NAL + G V G DLR R + Sbjct: 77 TPLEGRL---------------EEDLLRRDYRVNALLW-KGGAVFGLKGVEEDLRRRLLV 120 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSERIWS 207 + + + + +D+LR LR R A G + ++ G A + + ER+ Sbjct: 121 PVREEN--LYQDHLRSLRGVRLAATLGFGLPRRTREALGRHARFLQAHPEALPARERVKE 178 Query: 208 EINKLL 213 E+ +LL Sbjct: 179 ELARLL 184 >gi|91199946|emb|CAJ72988.1| unknown protein [Candidatus Kuenenia stuttgartiensis] Length = 126 Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I I+ L ++ GG VRD +M D DIAT LP +M +F KT Sbjct: 8 IEIVKTLQDKGFEAFFAGGCVRDMIMRRESADYDIATNALPRDIMNLFKKT----FSVGA 63 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV 108 YG + ++ F++ T R++ +DGR+ V Sbjct: 64 QYGVVVVVKDGHNFEVATFRTEKSYSDGRHPDYV 97 >gi|297570022|ref|YP_003691366.1| polynucleotide adenylyltransferase region [Desulfurivibrio alkaliphilus AHT2] gi|296925937|gb|ADH86747.1| Polynucleotide adenylyltransferase region [Desulfurivibrio alkaliphilus AHT2] Length = 885 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 28/216 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA--------TTILPDRV---MRIFSKTRYKVIPTSIS 76 ++ VGG VRD L+ DID+ L +R+ +R+ K + V+ Sbjct: 483 RAFAVGGFVRDLLLQEKNFDIDVVIEGDGMVFAKALAERLKGRVRVHKKFKTAVVKLPDG 542 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQ 132 R +Y+D V K D RRDFTINA L D Sbjct: 543 LKVDVATARLEYYDYPA----------AMPTVELSSLKLDLYRRDFTINAMAIHLNPDTF 592 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASI 191 G ++D+ NDL++ I+ + + +ED RI R RF G ++ L+ + Sbjct: 593 GTLVDFFNSQNDLKDHKIRVLHNLS--FVEDPTRIFRAIRFEQRMGFTIGQHTERLIKNA 650 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 R + E+ +L +NPL AI M + Sbjct: 651 VRMNLFDRFFGYRFFGELKGILSEENPLPAIRRMAD 686 >gi|320450024|ref|YP_004202120.1| tRNA nucleotidyl transferase [Thermus scotoductus SA-01] gi|320150194|gb|ADW21572.1| tRNA nucleotidyl transferase [Thermus scotoductus SA-01] Length = 431 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 18/150 (12%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + VGGA+RD L+ QD+D S + P G +++ Sbjct: 18 AIPVGGALRDLLLGRRPQDLDFVAEDPRKAAQDAQSHLGGTLFPLDEERGQYRLVTGGLV 77 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 D + L L + D L+RDF +NAL+ +Q +++ G DL R Sbjct: 78 LDFSPLEGSL---------------EEDLLKRDFRLNALFW-RQNRILGIRGADEDLNRR 121 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + + +A+ + ED+LR LR R A G Sbjct: 122 VLVPVREAN--LYEDHLRSLRAVRLAASLG 149 >gi|206895388|ref|YP_002246809.1| polynucleotide adenyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|206738005|gb|ACI17083.1| polynucleotide adenyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 324 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 15/133 (11%) Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 +RDF +NA+ D QG D GGL DL NR + R+ ED +R+LR + A G Sbjct: 103 KRDFPMNAMALDFQGNYYDPRGGLEDLFNRQLSV---EKERLEEDPIRVLRAAKLCAELG 159 Query: 179 EKNIDS--DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + DGL+ L+ ++ R++ E K++ + L AI + + F ++ L Sbjct: 160 LTPVGDKVDGLLL-------LRQVNEGRLYQEYLKMILSPEWLKAIEILKD---FFQLPL 209 Query: 237 DVQEISLDQLSQV 249 V +L L+ + Sbjct: 210 KVPSTNLPPLAPI 222 >gi|73670616|ref|YP_306631.1| tRNA nucleotidyltransferase [Methanosarcina barkeri str. Fusaro] gi|72397778|gb|AAZ72051.1| tRNA nucleotidyltransferase [Methanosarcina barkeri str. Fusaro] Length = 404 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 29/200 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSKTRYK--VIPT--------SISYGT 79 IVGGAVR LM + D+D L D +F R + P +++ Sbjct: 24 IVGGAVRRFLMCQTPHDVDFCVCGLTVDTFKDLFPDARQQGNQFPVFVVDDCEFAMARTE 83 Query: 80 IKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDY 138 K+ F+I + S I + D RRD TIN++ D G ++D Sbjct: 84 KKVCAGYNGFEINSDPSVTIEE--------------DLCRRDLTINSIAIDVITGMIVDP 129 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G DL N I DA ED +R++R RF Y ++ + +K Sbjct: 130 FNGAEDLINGIITPTSDA---FKEDPVRVIRAARFMCEYPTFRASPTLIMYMLDLVHEIK 186 Query: 199 ILSSERIWSEINKLLEAKNP 218 ++S + +SE+ K+ + P Sbjct: 187 LISDDHKFSELKKVFSSPKP 206 >gi|288818535|ref|YP_003432883.1| poly A polymerase [Hydrogenobacter thermophilus TK-6] gi|288787935|dbj|BAI69682.1| poly A polymerase [Hydrogenobacter thermophilus TK-6] gi|308752125|gb|ADO45608.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Hydrogenobacter thermophilus TK-6] Length = 508 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 41/241 (17%) Query: 27 DKSC-IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFS-----------KTRYKVI 71 D+ C +VGG VRD L+ V D+D+ + P +V R F+ K + Sbjct: 34 DEFCFVVGGWVRDRLLGEPVGYHIDVDLLVSCDPTKVARDFANLVGGAYFEFEKKGLLIK 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY--- 128 +I+ +++ K FD ++ G+ + D L RDFT NA+ Sbjct: 94 RPTIATVILRLPPYKYRFDFAQIK------GKDLEKALIEDL----LSRDFTANAMAVSI 143 Query: 129 ------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +Q + D G+ DL ++ + + + +D +R+LR FR EK++ Sbjct: 144 DDVLSIGAKQTIIYDPAKGIEDLERGLLRPV--SLKNLEDDPVRMLRGFRLSV---EKDL 198 Query: 183 DSDGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +KG +K +ERI E+ K+L + I +YN GI + IF ++++ Sbjct: 199 SLTEDFYDFVKRKGHLIKKAPAERITLELLKILRHRRSGKVIRDLYNHGILEAIFPEIEK 258 Query: 241 I 241 + Sbjct: 259 L 259 >gi|26449498|dbj|BAC41875.1| putative poly(A) polymerase [Arabidopsis thaliana] Length = 571 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 W+ +SL+RDFTIN+L+ + + DY G+ DL + ++ + AH ED RILR Sbjct: 13 WR-NSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTLVPAHLSFKEDCARILRGL 71 Query: 172 RFFAHYG 178 R A G Sbjct: 72 RIAARLG 78 >gi|57234925|ref|YP_181081.1| polyA polymerase family protein [Dehalococcoides ethenogenes 195] gi|57225373|gb|AAW40430.1| polyA polymerase family protein [Dehalococcoides ethenogenes 195] Length = 493 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 16/120 (13%) Query: 110 TRDWKADSLRRDFTINALYAD----QQGK-----VIDYVGGLNDLRNRTIKFIGDAHHRI 160 T D A+ RRDF +NA+ A QG +ID + GL D+ NR I+ + Sbjct: 98 TADITANLTRRDFKLNAMAAPLSAVHQGSLPVQAIIDPMQGLPDIENRVIRVT--SADVF 155 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG--LKILSSERIWSEINKLLEAKNP 218 D +R+LR R A G DG S+ + ++ ERI E+ KLLE P Sbjct: 156 SADPIRLLRAIRLSAELG---FALDGQTQSLITTHAALISTVAGERIREELLKLLETSQP 212 >gi|291287438|ref|YP_003504254.1| Polynucleotide adenylyltransferase region [Denitrovibrio acetiphilus DSM 12809] gi|290884598|gb|ADD68298.1| Polynucleotide adenylyltransferase region [Denitrovibrio acetiphilus DSM 12809] Length = 881 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 25/278 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K +VGG VRD L+ + +DIDI + F+ + + T +I Sbjct: 484 KCYLVGGVVRDILLRKNNEDIDIVVEGSAPAFAKKFAAKHNARVAVHAKFKTAVVIFPDG 543 Query: 88 Y-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGL 142 + D T R++ A V + D RRDF+INA+ + G ++D+ GG Sbjct: 544 FRVDFATSRTEYYNFPASAPTVEDASIRNDLFRRDFSINAMAVKLNNSEFGTLLDFFGGQ 603 Query: 143 NDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKI 199 D+ +R I+ + H + ++D R LR RF + +D L + Sbjct: 604 RDISDRKIRVL----HSLSFVDDPSRALRAIRFAVRFDFSIGPHTDRLFKHAVSLNLFDR 659 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIF----KEIFLDVQEISLDQLSQVI----- 250 + R++ E+ +L KN A+ M + K++ +D ++ +L + ++I Sbjct: 660 VIGPRMFLELKYILNEKNYTKALDMMKKYDMIRFFSKKVQMDDRKTALFEGLELILDWYS 719 Query: 251 -EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + E FE + RFIVL D++ I + +F L Sbjct: 720 FQFEDEFELYVS---RFIVLFWELDREDIGDLLDRFQL 754 >gi|302342109|ref|YP_003806638.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] gi|301638722|gb|ADK84044.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] Length = 478 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 30/220 (13%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS---K 65 +F D+ L L + E + GGA+RD+L++ D+D+A + + + Sbjct: 8 FFSDNRLQLARRLALRREQTLWLCGGAIRDALLDRRPADLDLAADGDAAALAQDLAHELN 67 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 RY ++ + + +++ + D+T LR+ I + D + RDFTIN Sbjct: 68 GRYILL--DPDHQSCRVVADGQAIDLTGLRAPTI--------------EQDLVARDFTIN 111 Query: 126 ALYAD------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 A+ A + ++D GG DLR ++ G R D LR+LR R A G Sbjct: 112 AMAAPLDALLAGRPVLLDPTGGQADLRAGLLRPAGSGVLRA--DPLRVLRAGRLAAELGL 169 Query: 180 KNIDSDGLVASI-KAKKGLKILSSERIWSEINKLLEAKNP 218 + GL + +A GL ER+ E +LEA +P Sbjct: 170 S--PAPGLPERLGRAASGLAQTPKERLAHEWLAMLEAADP 207 >gi|158334195|ref|YP_001515367.1| polyA polymerase [Acaryochloris marina MBIC11017] gi|158304436|gb|ABW26053.1| polyA polymerase [Acaryochloris marina MBIC11017] Length = 902 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 44/178 (24%) Query: 31 IVGGAVRDSLMNLSVQD---------------------IDIATTI---LPDRVMRIFSK- 65 +VGGAVRD L++ Q + +A T+ P+ ++++ + Sbjct: 481 LVGGAVRDLLLSGPNQPFRVKEFDLVVDGVETTAKAAGVSLAQTLQSDYPETQLQVYGQF 540 Query: 66 -TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 T + P+ + DI T RS+ V + D RRDFTI Sbjct: 541 QTAALIWPSGSELAGFSV-------DIATARSEFYPYPAANPEVEASSIRQDLYRRDFTI 593 Query: 125 NALY---------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 NAL + G+++D+ GG+ DL++R I+ + + +ED RI R RF Sbjct: 594 NALAVRLTRQGFQSHPSGELLDFFGGVVDLQDRQIRVLHP--NSFIEDPTRIFRAVRF 649 >gi|94968964|ref|YP_591012.1| polynucleotide adenylyltransferase [Candidatus Koribacter versatilis Ellin345] gi|94551014|gb|ABF40938.1| Polynucleotide adenylyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 567 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/248 (20%), Positives = 106/248 (42%), Gaps = 11/248 (4%) Query: 16 INILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +N+++ + + D + + GGA+RD L ++DID+ P ++ + K V T Sbjct: 20 VNLITDVARAHDMNIYLTGGALRDLLTGFPIRDIDLTVQGNPFKLQKDLEKAGAAVHGTE 79 Query: 75 ISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYA 129 T+ ++ +++ RS V D RRDFT+NA L Sbjct: 80 EDSKTLHLLLPGNVRVEVSMSRSATYEKPGKPPKVEPATINEDLRRRDFTVNAMALSLNP 139 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLV 188 +G + D G+ D+ + ++ + + + E+ R+LR RF A + + Sbjct: 140 GSKGLLADPFNGVADIELKVLRILHN--YAFYEEPSRLLRAVRFAARFHWPLEERTQARY 197 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--DVQEISLDQL 246 + K ++ ++ + + E+ ++ NP+ + M G K + V ++ +L Sbjct: 198 DAAKENSYIEYINKDAVGYELEQVAREDNPIEIVRAMEKEGWLKVLHPHWTVAKLESPEL 257 Query: 247 SQVIEAEQ 254 +Q+++ Q Sbjct: 258 TQLLKVRQ 265 >gi|331231557|ref|XP_003328442.1| tRNA nucleotidyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307432|gb|EFP84023.1| tRNA nucleotidyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 254 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+LRRD TIN+L+ + G + D+ G GL DL I+ A H +D LR+LR RF Sbjct: 173 DALRRDITINSLFYNVHTGAIEDHTGKGLEDLEVGLIRTPLPAEHTFKDDPLRLLRCIRF 232 Query: 174 FAHYGEKNIDSDGLVASI 191 +G + +D+D + A+ Sbjct: 233 ATRFGYR-LDADIVSAAT 249 >gi|86605729|ref|YP_474492.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab] gi|86554271|gb|ABC99229.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab] Length = 445 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%) Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE-DYLRILRFF 171 +AD +RDFT NAL + Q+G ++D GG D+ R ++ + H L D +R+LR + Sbjct: 118 EADLRQRDFTCNALALELQEGHLLDPTGGRADIEQRCLRMV---HPDNLSADPVRLLRAY 174 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R A G +D A + L +++ER+ +E+ LLE P Sbjct: 175 RQAAQLG-FALDPATAEAIRQRAPLLARVAAERVRAEVVTLLETGIP 220 >gi|123965571|ref|YP_001010652.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9515] gi|123199937|gb|ABM71545.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9515] Length = 415 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 16/179 (8%) Query: 14 DLINILSLLNK--GEDKSCIVGGAVRDSLMN-------LSVQDIDIAT----TILPDRVM 60 DL NI+S K K IVGG +RD L+N S DIDI T L + Sbjct: 18 DLFNIISNYIKLHSNVKVAIVGGYIRDLLINKIHKKTFFSPIDIDIVTEGSSVDLAKFIK 77 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + S +I Y T+++ DI + R + +V + D RR Sbjct: 78 KNISNVELCLIKEFEIYDTVELNINNLKIDIASARKETYEAPGLNPIVQHTSIEEDLKRR 137 Query: 121 DFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 DF+INA+ + + ++ DY G+ ++ + + + + + I +D RI+R R+ + G Sbjct: 138 DFSINAIAFEFSKQEIYDYFDGIKHIKEKELHLLHE--NSIQDDPSRIIRCARYASRLG 194 >gi|328853364|gb|EGG02503.1| hypothetical protein MELLADRAFT_28635 [Melampsora larici-populina 98AG31] Length = 206 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 21/169 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICRK-- 86 I GG VRD L+ + D+D+A +++ + + FS +S I II + Sbjct: 7 IAGGWVRDKLLGVESNDLDLAISSLTGTQFAQHFSNFISIHSNQKDLSLSKIAIIEARPD 66 Query: 87 --KYFDITT-----LRSDLI--------TDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 K+ + T L D + +D R + K D++RRD TINAL+ + Sbjct: 67 QSKHLETATSKFLNLELDFVQLRNESYHSDSRIPSDIRFGTPKEDAMRRDITINALFYNI 126 Query: 132 QGKVIDYVG--GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 I+ GL DL+N I+ A +D LR+LR RF + +G Sbjct: 127 HNDQIEDQTELGLEDLKNGLIRTPLPALETFQDDPLRLLRCIRFSSRFG 175 >gi|150387946|ref|YP_001317995.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alkaliphilus metalliredigens QYMF] gi|149947808|gb|ABR46336.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alkaliphilus metalliredigens QYMF] Length = 472 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 26/196 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG++RD L+N +++D+D+ P R +K G+ ++ + + Sbjct: 21 LVGGSIRDFLLNRNIKDLDLIIKEDPGRFAEKIAKE---------LQGSYFVLDQDRGIH 71 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQG------KVIDYVGGLN 143 ++ + D AK D AD +RD+TINA+ Y + G ++ID GG Sbjct: 72 RVKVKDGITID--LAKFQ-GEDILADLAKRDYTINAMAYPLESGWPIDESQLIDPYGGQQ 128 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LS 201 D++ + I+ I + + + +D +R+LR R G+ + + D + L I Sbjct: 129 DIKEKVIRQISEKNFQ--QDPIRMLRGPRLM---GQLDFEMDDETKKSIQRNCLLINEAP 183 Query: 202 SERIWSEINKLLEAKN 217 ERI +EI LL +N Sbjct: 184 GERIATEIFTLLGEEN 199 >gi|251771595|gb|EES52171.1| Polynucleotide adenylyltransferase region [Leptospirillum ferrodiazotrophum] Length = 380 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 23/202 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +L+ L + +VGGAVRD +D+D + + R K +P Sbjct: 16 GECLPLLAPLFRAGIPVWLVGGAVRDLREGRVPRDLDFVAEAEVECLRRYLPKA----VP 71 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY---- 128 T+ + R+ L G R AD RRDF++NA+ Sbjct: 72 VGGKNSTL-------VLSLGKGRAPLEISG------AGRGIHADLERRDFSVNAMAWRVA 118 Query: 129 -ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 A +G+++D GG DL ++ + ED +RILR RF + G ++ L Sbjct: 119 PAGLEGEILDPFGGREDLGKGILRVPLASRDPFREDPVRILRLLRFVSTRG-YGVEGWTL 177 Query: 188 VASIKAKKGLKILSSERIWSEI 209 + A L ++ ER EI Sbjct: 178 SMARGALDALPCVAGERRLREI 199 >gi|86610318|ref|YP_479080.1| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558860|gb|ABD03817.1| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 908 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 37/241 (15%) Query: 31 IVGGAVRDSLM---------NLSVQDIDIATT-----------------ILPDRVMRIFS 64 +VGG VRD L+ NL D+D+ IL + + F Sbjct: 489 LVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGIDPPGWGLILGQALKQHFP 548 Query: 65 KTRYKVIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + R ++ + T +I + DI + R++ V + D RRDF+ Sbjct: 549 EARLEI---HGKFQTAALIWPGGFCVDIASARTEFYPYPASPPEVAMGSIQQDLYRRDFS 605 Query: 124 INALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 INAL Q+G+V+D+ GG DL+ I+ + + +ED RI R RF G Sbjct: 606 INALALRLNGPQRGQVLDFFGGQADLQQGIIRALHP--NSFIEDPTRIYRAVRFAVRLGF 663 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + ++ + + A + +R+ E+ +L +++ A + G + I D+ Sbjct: 664 ALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAFEQLAEWGALRCIHPDL 723 Query: 239 Q 239 + Sbjct: 724 E 724 >gi|198283567|ref|YP_002219888.1| polynucleotide adenylyltransferase region [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665962|ref|YP_002426192.1| polyA polymerase family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248088|gb|ACH83681.1| Polynucleotide adenylyltransferase region [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518175|gb|ACK78761.1| polyA polymerase family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 450 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 88/423 (20%), Positives = 154/423 (36%), Gaps = 69/423 (16%) Query: 31 IVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +VGG VRD L N D D+A + + S + P +GT + Sbjct: 56 LVGGCVRDLLQNHPAPDTDLAIEGDVRAVAEACTAQLSGMQCTYHP---QFGTAILEYPD 112 Query: 87 KY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGG 141 + D+ R + V D AD RRDFTINA+ G +D GG Sbjct: 113 GFRLDLARCRVEHYPAPAALPEVRPGDIVADLARRDFTINAMAISLDPGSFGGFLDPHGG 172 Query: 142 LNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLK 198 DL++ ++ + H + ++D R+LR RF + + + L+ + A+ Sbjct: 173 RMDLQHGLLRVL----HPLSFVDDPTRMLRGLRFAVRFHLRLEPGTHVLLKTALARDIFA 228 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS R+W E+ +LE ++ L + + + V L+ + Q W Sbjct: 229 RLSGARLWRELKYVLELED-LAGVFEKLDAWQLWPLLRPVPPEPETLLASMKRGRQEITW 287 Query: 259 -----KIDSLLRFIVL-------ISWQDKKSIL---SMAKKFSLPREIRYFLISFFNCNF 303 + L VL I W + + L +A + R++++ +S + Sbjct: 288 FHRHFPGERLFDTAVLLTLIWRHIPWAEAEKRLHCWPVADGHHILRDLQF--LSEVSAAL 345 Query: 304 NQKT-----------LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352 Q T LS+P I L + + +A+ L L Sbjct: 346 AQATRPSAAAQLWASLSLPGILALLAEHPESDAVAESGRHYLLKQRALKS---------- 395 Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 PL+G D+ G+ PG ++G +L + ++ + + L+R+ I Sbjct: 396 -----------PLSGRDLQAMGLAPGPQLGKVLRRLYEAHLDGEIEDKETARQWLIRQGI 444 Query: 413 ASS 415 S Sbjct: 445 LPS 447 >gi|86606513|ref|YP_475276.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab] gi|86555055|gb|ABD00013.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab] Length = 903 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 DI + R++ V D RRDF+INAL Q+G+++D+ GG DL Sbjct: 570 DIASARTEFYPYPASPPEVAMGSIHQDLYRRDFSINALALRLNGPQRGQLLDFFGGQADL 629 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 + I+ + + +ED RI R RF H G Sbjct: 630 QKGIIRALHP--NSFIEDPTRIYRAVRFAVHLG 660 >gi|22298257|ref|NP_681504.1| polyA polymerase [Thermosynechococcus elongatus BP-1] gi|22294436|dbj|BAC08266.1| polyA polymerase [Thermosynechococcus elongatus BP-1] Length = 426 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 27/217 (12%) Query: 31 IVGGAVRDSLMNLSV--QDIDIATTILPDRVMRIFSK--TRYKV--IPTSISYGTIKIIC 84 +VGGAVRD+L+ + D+D I+P + + K +YK + G +++ Sbjct: 25 LVGGAVRDALLGRTTLYPDLDF---IVPRDAIGLSKKLADKYKAGWVLLDRDRGIARLVF 81 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLN 143 + DI R+ + + D RDF INA+ D ++D +GGL Sbjct: 82 PQTTVDIAQ---------RHGETLLN-----DLSDRDFRINAIAYDIHHHHIVDPLGGLL 127 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 D++ R I ++ A + D LR+LR +R A V A + L+ +++E Sbjct: 128 DVQRRQIHYV--APENLAADPLRLLRAYRQAAQLQLTITPETRQVIQTLAPQ-LRRVAAE 184 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 R+ E++ LL A + + G+ V E Sbjct: 185 RVRVELSYLLSAVEGAAQVTLAFRDGVLAVWLPSVTE 221 >gi|115373999|ref|ZP_01461289.1| polynucleotide adenylyltransferase, putative [Stigmatella aurantiaca DW4/3-1] gi|115369006|gb|EAU67951.1| polynucleotide adenylyltransferase, putative [Stigmatella aurantiaca DW4/3-1] Length = 212 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 12/137 (8%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC----RKKYFDITTLRS 96 M + QD+DIA + V ++ + P ++C D + LRS Sbjct: 1 MGVPTQDVDIAVDRSMEEVHQLLRHAYPDIDPVRSRLDRFGMMCWGDDASGGVDFSFLRS 60 Query: 97 --DLITDG-RYAKVVFTRDWKADSLRRDFTINALY--ADQQGKVIDYVG-GLNDLRNRTI 150 D+ D R + D + D+L RDF++NA Y + G ++D +G GL D++ R + Sbjct: 61 PGDIQNDDMRTTSFIPRGDVRDDALMRDFSVNAFYFACHEGGVLLDPLGCGLEDVQGRIL 120 Query: 151 KFIGDAHHRILEDYLRI 167 + I H R+LE RI Sbjct: 121 RLI--THPRVLETSYRI 135 >gi|255075005|ref|XP_002501177.1| predicted protein [Micromonas sp. RCC299] gi|226516440|gb|ACO62435.1| predicted protein [Micromonas sp. RCC299] Length = 971 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 6/149 (4%) Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLR 146 Y D + TDG + + + R + ++ R FT+NA+ D + G + D+ GGL+D+ Sbjct: 388 YGDSDAETAAKATDGAHER--WLRRLRVNARGRCFTVNAMMYDVETGVLYDFAGGLDDVD 445 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSERI 205 + ++ + +D R+LR R A +G ++AS++A ++ + R+ Sbjct: 446 AKRVRTVRRPDESFADDPTRMLRAVRVAARHGLAPTRE--ILASMRAHAPSIRTVPPMRV 503 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 E+ LL ++ ++ G+ + + Sbjct: 504 AGEVKTLLSGGYAATSVRMLWETGLLEHV 532 >gi|113474845|ref|YP_720906.1| polynucleotide adenylyltransferase region [Trichodesmium erythraeum IMS101] gi|110165893|gb|ABG50433.1| Polynucleotide adenylyltransferase region [Trichodesmium erythraeum IMS101] Length = 423 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 39/223 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+L+ +D+ IL D+ + I + I G + + +K Sbjct: 27 LVGGSVRDALLKRKTTYLDLDFIIL-DQAVSI-----ARNIAKEYQAGFVVLDAERK--- 77 Query: 91 ITTLRSDLITDGRYAKVVF---TRDW--------KADSLRRDFTINAL-YADQQGKVIDY 138 A+VVF T D+ K D RRDFTINA+ Y ++ID Sbjct: 78 -------------IARVVFKGTTVDFAEIEGNSLKEDLWRRDFTINAIAYNPFTNELIDL 124 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL- 197 L DL++ I+ + + + ED LR+LR +R A G I S +I+ L Sbjct: 125 FNALKDLQDGIIRMVKSENLK--EDPLRLLRAYRQAAQLG--FIISPETQTTIREFAPLI 180 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +++ER+ +E+ LL + I + G+ + F E Sbjct: 181 TQVATERVQTELGYLLSHPQGMIWIEKAWKNGLLSDYFPAATE 223 >gi|295398|gb|AAA27494.1| ORFB [Thermus thermophilus] Length = 213 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 22/186 (11%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 +GGAVRD L+ D+D A + + P G +++ ++ D Sbjct: 1 MGGAVRDLLLGRRPTDLDYAALDPEGAAEEAKRRLGGSLFPLDPKRGHYRLVVGERTLDF 60 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 T L L + D LRRD+ +NAL + G V G DLR R + Sbjct: 61 TPLEGRL---------------EEDLLRRDYRVNALLW-KGGAVFGLKGVEEDLRRRLLV 104 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLKILSSERIWS 207 + + + + +D+LR LR R A G ++ ++ G A + + ER+ Sbjct: 105 PVREEN--LYQDHLRSLRGVRLAATLGFGLPQRTREALGRHARFLQAHPEALPARERVKE 162 Query: 208 EINKLL 213 E+ +LL Sbjct: 163 ELARLL 168 >gi|307104614|gb|EFN52867.1| hypothetical protein CHLNCDRAFT_58740 [Chlorella variabilis] Length = 911 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 17/178 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-----YKVIP 72 +LS L ++ +VGG +RD L+ + +D D+ TT ++ R+F + + V Sbjct: 277 VLSRLRAAGHEAYVVGGTIRDLLLGGTPKDYDLLTTAELHQIKRLFGRCNIVGRSFPVCQ 336 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD--GRYAKVVFTRD---------WKADSLRRD 121 I++ D+ + +D T GR R ++ RRD Sbjct: 337 VHAEGTMIEVSSFTTNADLRLIPADASTHMIGRQKPKRVARQEAGATWAAARADNAARRD 396 Query: 122 FTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 FT+N L D +++ D VGG+ D + R ++ I D RILR R A G Sbjct: 397 FTVNGLLYDPFSRLLFDSVGGVADCQARRLRTICPPQQSFAADPARILRGVRLAARAG 454 >gi|86605414|ref|YP_474177.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab] gi|86553956|gb|ABC98914.1| polyA polymerase family protein [Synechococcus sp. JA-3-3Ab] Length = 908 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 37/241 (15%) Query: 31 IVGGAVRDSLM---------NLSVQDIDIATT-----------------ILPDRVMRIFS 64 +VGG VRD L+ NL D+D+ IL + + F Sbjct: 489 LVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGTDPPGWGLILGQALKQRFP 548 Query: 65 KTRYKVIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + R ++ + T +I + DI + R++ V + D RRDF+ Sbjct: 549 EARLEI---HGKFQTAALIWPGGFCVDIASARTEFYPYPASPPEVAMGSIQQDLYRRDFS 605 Query: 124 INALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 INAL Q+G+V+D+ GG DL+ I+ + + +ED RI R RF G Sbjct: 606 INALALRLNGPQRGQVLDFFGGQADLQQGIIRALHP--NSFIEDPTRIYRAVRFAVRLGF 663 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + ++ + + A + +R+ E+ +L +++ A + G + I D+ Sbjct: 664 ALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAFERLAEWGALRCIHPDL 723 Query: 239 Q 239 + Sbjct: 724 E 724 >gi|167987250|gb|ACA13297.1| putative chloroplast polyA polymerase precursor [Chlamydomonas reinhardtii] Length = 960 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 20/105 (19%) Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHR-------ILEDYLRILRFFRF----- 173 A + G+V DYVGGL DL R ++ G H R + D +R+LR R Sbjct: 457 AAHLQPAGRVKDYVGGLVDLAERRLRVYG-GHERLGLRTSSVEADPVRVLRAARLSVQLG 515 Query: 174 ----FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 Y + + G I +KG +S+ R+W E++K+ E Sbjct: 516 LAVEAGGYTAARLRAAGPKCGISPEKG---VSASRVWRELSKMAE 557 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 14/98 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICRKKYFD 90 GG VRD + DIDI T V +F + ++K T+++ F+ Sbjct: 300 AGGWVRDQFLGRPSPDIDIVTNASITEVYEVFRRDCKHK------GAATMEVTADGLAFE 353 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +T+ R L+ D A +W+ D+ RDFT NAL+ Sbjct: 354 VTSYRGGLVGDCEEA------EWR-DAAYRDFTCNALF 384 >gi|189425419|ref|YP_001952596.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter lovleyi SZ] gi|189421678|gb|ACD96076.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geobacter lovleyi SZ] Length = 402 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Query: 115 ADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 AD RDFTINA+ G++ D + G +DL+ R ++ + ED LRI+R RF Sbjct: 90 ADLSCRDFTINAIALSLSGRLYDPLNGQHDLQQRLLRLC--SGRSFAEDPLRIIRGIRFV 147 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 A ++ L+ L L ER E+ K L A Sbjct: 148 ADGWRMVPETAQLIQQQDWSAQLACLPVERFSREMIKALAA 188 >gi|312213715|emb|CBX93717.1| similar to tRNA nucleotidyltransferase [Leptosphaeria maculans] Length = 958 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 45/248 (18%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILP--------DRVMRIF-----------------SKT 66 GG VRD L+N+ DID+A L +RI S Sbjct: 94 TGGWVRDKLLNIESHDIDLAINKLTGEHFGLKMQEYLRIPGNAEKHGLIAEGEKLSDSDR 153 Query: 67 RYKVIP------------TSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDW 113 K+ P ++ T KI+ D+ LR + + R ++ F Sbjct: 154 TKKIAPGLHKIEANPEKSKNLETATTKILGID--LDLVNLRKETYNEVSRNPQMEFGTA- 210 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D++RRD T+NA++ + +V D+ G D+ R I+ + + +D LR+LR Sbjct: 211 EEDAMRRDATVNAMFYNLHTCEVEDFTKRGHEDMAARIIRTPLEPYQTFKDDPLRVLRLI 270 Query: 172 RFFAHYGEK-NIDSDGLVASIKAKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF + ++ + + + + LKI +S ER+ E+ K+L+ A+ + G Sbjct: 271 RFASRLDYTIEPETAKAMGNPEIQDVLKIKISRERVGIELEKMLKGPRSRMALELIDRFG 330 Query: 230 IFKEIFLD 237 +++ +F D Sbjct: 331 LYRTVFTD 338 >gi|289432235|ref|YP_003462108.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dehalococcoides sp. GT] gi|288945955|gb|ADC73652.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dehalococcoides sp. GT] Length = 505 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 16/116 (13%) Query: 110 TRDWKADSLRRDFTINALYAD---------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 T D A+ RRDF +NA+ A Q ++D + GL D++NR I+ R Sbjct: 105 TPDISANLARRDFNLNAMAAPLSALNHGNLQIHAIVDPMQGLRDIKNRVIRVTSSEVFR- 163 Query: 161 LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLE 214 D +R++R R A G E + + L+ + GL ++ ERI E+ KLLE Sbjct: 164 -ADPIRLIRAIRLSAELGFELDEQTQSLITT---HAGLISTVAGERIREELLKLLE 215 >gi|148240592|ref|YP_001225979.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. WH 7803] gi|147849131|emb|CAK24682.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. WH 7803] Length = 421 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 40/201 (19%) Query: 27 DKSCIVGGAVRDSLMN--LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + + +VGGAVRD L+N D+D+ V+P ++ GT++ + Sbjct: 40 EGAVLVGGAVRDGLLNRLPPCPDLDL-------------------VVPGAV-LGTVQRLA 79 Query: 85 RKK-----YFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTIN--ALYADQQG 133 R+ D + L+ G + F R D D RRDF +N AL Sbjct: 80 REHGGACVVLDEQRQMARLVLKG--WTIDFARLEGEDLTEDLFRRDFRLNAIALSLSHPQ 137 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GGL DL++ I I +++ R +D LR+LR R A E ID+D L A +KA Sbjct: 138 QLIDPTGGLQDLQDGLICAIRESNLR--DDPLRLLRALRLMAEL-EMRIDTDTL-AMVKA 193 Query: 194 KKGLKILSS-ERIWSEINKLL 213 L S+ ERI +E+ +L+ Sbjct: 194 NGALLTRSAPERIQAELLRLV 214 >gi|242042361|ref|XP_002468575.1| hypothetical protein SORBIDRAFT_01g048240 [Sorghum bicolor] gi|241922429|gb|EER95573.1| hypothetical protein SORBIDRAFT_01g048240 [Sorghum bicolor] Length = 353 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 22/121 (18%) Query: 113 WKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILED----YLRI 167 WK DS+RRDFT+N L+ + K+ DYV G+ D+R + + AH +ED +R+ Sbjct: 41 WK-DSMRRDFTVNGLFFNPMNYKIYDYVNGVRDMRKNKVCTVIPAHISFMEDPAGPSVRL 99 Query: 168 LR-------FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 LR F A Y L +K + L ++ + +++LL A P + Sbjct: 100 LRKYGLLDILLPFQAAY---------LSDQLKGGSSDRDLMLMKLLANLDRLLSADRPCH 150 Query: 221 A 221 + Sbjct: 151 S 151 >gi|55980800|ref|YP_144097.1| polyA polymerase family protein [Thermus thermophilus HB8] gi|55772213|dbj|BAD70654.1| polyA polymerase family protein [Thermus thermophilus HB8] Length = 818 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 22/160 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIA--TTILPDRVMRIFSKTRYKVIPTSISYGTIKI-ICRKK 87 +VGGAVRD+L+ S D+D+A + RV + ++GT ++ + Sbjct: 461 LVGGAVRDALLGRSGPDLDLAVGPGVEVARVAQFLVDRFGGSYGLHYAFGTARVRLPFGL 520 Query: 88 YFDITTLRSDL------ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVG 140 D+ R ++ + + R A + RD + RRD+++NA+ D G +D G Sbjct: 521 VVDLAESREEVYPYPGALPEVRRAPI--ARDLE----RRDYSVNAMAVDLGGLAFLDPYG 574 Query: 141 GLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG 178 GL DL R ++ + H + +ED R++R R A G Sbjct: 575 GLRDLEARLLRPL----HPLAFVEDPTRVVRGARLAARLG 610 >gi|46198787|ref|YP_004454.1| tRNA nucleotidyltransferase [Thermus thermophilus HB27] gi|46196410|gb|AAS80827.1| tRNA nucleotidyltransferase [Thermus thermophilus HB27] Length = 815 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 18/158 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIA--TTILPDRVMRIFSKTRYKVIPTSISYGTIKI-ICRKK 87 +VGGAVRD+L+ S D+D+A + RV + ++GT ++ + Sbjct: 458 LVGGAVRDALLGRSGPDLDLAVGPGVEVARVAQFLVDRFGGSYGLHYAFGTARVRLPFGL 517 Query: 88 YFDITTLRSDLIT-DGRYAKV---VFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGL 142 D+ R ++ G +V RD + RRD+++NA+ D G +D GGL Sbjct: 518 VVDLAESREEVYPYPGALPQVRRAPIARDLE----RRDYSVNAMAVDLGGLAFLDPYGGL 573 Query: 143 NDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG 178 DL R ++ + H + +ED R++R R A G Sbjct: 574 RDLEARLLRPL----HPLAFVEDPTRVVRGARLAARLG 607 >gi|86610277|ref|YP_479039.1| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558819|gb|ABD03776.1| polyA polymerase family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 460 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 11/146 (7%) Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE-DYLRILRFFRF 173 D +RDFT NAL D Q+ +++D GG D+R ++ + H L D +R+LR +R Sbjct: 125 DLRQRDFTCNALALDLQREQLLDPTGGQADIRQSRMRMV---HPDNLSADPVRLLRGYRQ 181 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP-LNAIVHMYNGGIFK 232 A G +D A + L +++ER+ +EI LLEA P L + G+ + Sbjct: 182 AAQLG-FGLDPATQEAIRERAPLLANVAAERVRAEIVALLEAGIPGLAHLQAAVAAGLLQ 240 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEW 258 ++ S +A+ V+EW Sbjct: 241 AWLPHLKPES----PGFPQAQAVWEW 262 >gi|300087223|ref|YP_003757745.1| polynucleotide adenylyltransferase-domain containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526956|gb|ADJ25424.1| Polynucleotide adenylyltransferase region [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 417 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 7/152 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD L+ + D+D+A + R S R + I + T ++ + D Sbjct: 39 LVGGVVRDILLERNGFDLDLAVEGDAIELARSLSADRAR-ITVHHRFNTARVGFDSYHLD 97 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDLR 146 I R + T V + D RRDFT+NA L D G +ID G DL Sbjct: 98 IARTRCETYTRPGSLPTVRPGTIEDDLGRRDFTVNAMALSLNRDDYGNLIDRHDGRGDLE 157 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 I+ + A +D R+ R R+ +G Sbjct: 158 AGLIRVLHAAS--FTDDATRLWRAIRYEQRFG 187 >gi|270307707|ref|YP_003329765.1| polymerase [Dehalococcoides sp. VS] gi|270153599|gb|ACZ61437.1| polymerase [Dehalococcoides sp. VS] Length = 501 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 14/119 (11%) Query: 110 TRDWKADSLRRDFTINALYAD----QQGK-----VIDYVGGLNDLRNRTIKFIGDAHHRI 160 T D A+ RRDF +NA+ A QG +ID GL D+ NR I+ + Sbjct: 101 TADIAANLTRRDFKLNAMAAPLSAVHQGSLPVQAIIDPTQGLPDIENRVIRVT--SADVF 158 Query: 161 LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 D +R+LR R A G + + L+ + A + ++ ER+ E+ KLLE P Sbjct: 159 SADPIRLLRAIRLSAELGFALDWQTQSLITAHAAL--ISTVAGERVREELLKLLETSQP 215 >gi|147668960|ref|YP_001213778.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dehalococcoides sp. BAV1] gi|146269908|gb|ABQ16900.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dehalococcoides sp. BAV1] Length = 498 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 16/116 (13%) Query: 110 TRDWKADSLRRDFTINALYAD---------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 T D A+ RRDF +NA+ A Q ++D + GL D+ NR I+ R Sbjct: 98 TPDISANLARRDFNLNAMAAPLSALNHGNLQIHAIVDPMQGLRDIENRVIRVTSSEVFRA 157 Query: 161 LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLE 214 D +R++R R A G E + + L+ + GL ++ ERI E+ KLLE Sbjct: 158 --DPIRLIRAIRLSAELGFELDEQTQSLITT---HAGLISTVAGERIREELLKLLE 208 >gi|301167315|emb|CBW26897.1| putative poly(A) polymerase [Bacteriovorax marinus SJ] Length = 396 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 23/173 (13%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQ-DID--------IATTILPDRVMRIFSKTR-YKV 70 LLN K ++GGAVRD ++ + D+D + I P + +F + + V Sbjct: 19 LLNDRGFKLTLIGGAVRDFILYSKLSDDLDFEIRSQKFVDDAIWPSILKDLFKEMKPLGV 78 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD--GRYAKVVFTRDWKADSL------RRDF 122 S+ + ++ + F+I++ R ++ G Y F ++ ++ RRDF Sbjct: 79 AVESLKFNIYRVTFKGIEFEISSPRKEVYEPNIGDYGHSDFRAEFSSNFTYEESFARRDF 138 Query: 123 TINALYAD--QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 T+NA+ + ++ +ID GG+ + R + FI D +D +R+LR RF Sbjct: 139 TLNAIGVEFTEEFSLIDPYGGVEAAQKRELDFITDD---FFKDPVRLLRTLRF 188 >gi|73748185|ref|YP_307424.1| polyA polymerase family protein [Dehalococcoides sp. CBDB1] gi|73659901|emb|CAI82508.1| polyA polymerase family protein [Dehalococcoides sp. CBDB1] Length = 498 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 16/116 (13%) Query: 110 TRDWKADSLRRDFTINALYAD---------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 T D A+ RRDF +NA+ A Q ++D + GL D+ NR I+ R Sbjct: 98 TPDISANLARRDFNLNAMAAPLSALNHGNLQIHAIVDPMQGLRDIENRVIRVTSSEVFRA 157 Query: 161 LEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGL-KILSSERIWSEINKLLE 214 D +R++R R A G E + + L+ + GL ++ ERI E+ KLLE Sbjct: 158 --DPIRLIRAIRLSAELGFELDEQTQSLITT---HAGLISTVAGERIREELLKLLE 208 >gi|71019801|ref|XP_760131.1| hypothetical protein UM03984.1 [Ustilago maydis 521] gi|46099761|gb|EAK84994.1| hypothetical protein UM03984.1 [Ustilago maydis 521] Length = 763 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 32/179 (17%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-----SKTRYKVIPTSIS--------- 76 I GG VRD L+ D+DI+ + L ++ S + + P S S Sbjct: 104 IAGGWVRDKLLARDSDDLDISLSTLTGNAFALYLKHYLSSSAFASSPLSRSPFFSEEGSE 163 Query: 77 YGTIKIICRKK----------------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 G I I D LR + G + K D+ RR Sbjct: 164 MGRIGKIAANPEQSKNLETATARVLGLSLDFVNLRKETYDPGSRIPTMTFGTPKEDAERR 223 Query: 121 DFTINA-LYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 D TIN+ LY +V D+ G GL DL + I+ L+D LR+LR RF + + Sbjct: 224 DITINSLLYNVHTRQVEDHTGLGLQDLASGLIRTPLPPLTTFLDDPLRVLRCVRFASRF 282 >gi|323451929|gb|EGB07805.1| hypothetical protein AURANDRAFT_27394 [Aureococcus anophagefferens] Length = 237 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 25/169 (14%) Query: 31 IVGGAVRDSLMNLSVQDIDIA-----TTILPDRVMRIFSK------TRYKVIPTS----- 74 I GG VRD + +D+D+A RV + + VI + Sbjct: 41 ICGGWVRDKALGRVTKDVDVALDNVSGAAFAARVSEALAARGGDRGSNIGVIAANPEQSK 100 Query: 75 -ISYGTIKIICRKKYFDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTINALYAD 130 + T+++ D LRS+ D R + F + D+LRRDFT+NAL+ + Sbjct: 101 HLETATMRLC--GIEVDFVNLRSESYADAGDTRIPTMTFGTPEQ-DALRRDFTLNALFFN 157 Query: 131 QQGKVI-DYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 + I DY G +DLR ++ + +L+D LR LR RF + Y Sbjct: 158 VHSRAIEDYTKRGWDDLRTGIMRTPLEPRVTLLDDPLRALRGVRFASRY 206 >gi|322693496|gb|EFY85354.1| poly(A) polymerase [Metarhizium acridum CQMa 102] Length = 427 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 36/176 (20%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-----------SKTRYKVIPTSIS--- 76 I GG VRD L+++ D+D A + R F +K K I I Sbjct: 35 ITGGWVRDRLLDIPSSDLDEALNNITGRDFGKFLEAFSSRPDIQAKYHQKAIELGIPDAR 94 Query: 77 YGTIKIICRK------------KYF----DITTLRSDLITDG--RYAKVVFTRDWKADSL 118 + I+ R K F D+ LR + + DG R ++ F + D+ Sbjct: 95 FSRFHILERNADKAKNLETAGGKLFGLDIDLVILRKE-VYDGHSRAPEMQFGTP-EEDAF 152 Query: 119 RRDFTINALYAD-QQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRD T+N+L+ ++ +V+D G GL+DL +R ++ D ++D LR LR R Sbjct: 153 RRDATVNSLFFHLERQEVVDLTGKGLDDLESRIMRTPLDPRQTFMDDPLRTLRLIR 208 >gi|260893163|ref|YP_003239260.1| CBS domain containing protein [Ammonifex degensii KC4] gi|260865304|gb|ACX52410.1| CBS domain containing protein [Ammonifex degensii KC4] Length = 769 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%) Query: 119 RRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 ++DFTI+AL + G +ID+ GG NDL+N ++ + R E+ LRILR R Sbjct: 562 QQDFTIDALAIALTPHRFGVLIDFFGGQNDLKNGLLRVLHSYSFR--ENPLRILRILRLA 619 Query: 175 AHYG---EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 A E+ + L +++ K L+ + E++W EI LE N + + G++ Sbjct: 620 AELNFLIERET-ARFLREALREGK-LEQVPGEKLWEEIKLGLEGPNVPLFLSRLAEMGVW 677 Query: 232 KEIFLDVQEISLDQLSQVIEAE 253 +F + L+ +E E Sbjct: 678 PRLFPGLDYGRASSLAVALERE 699 >gi|163783310|ref|ZP_02178303.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1] gi|159881418|gb|EDP74929.1| poly A polymerase [Hydrogenivirga sp. 128-5-R1-1] Length = 513 Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 36/233 (15%) Query: 26 EDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMR-----------IFSKTRYKVI 71 ED IVGG VRD ++ V D+D T P ++ + +F K + Sbjct: 33 EDYCFIVGGWVRDRILGEPVGHNIDVDFLVTCDPVKIAQDFAERTGGHFFVFEKKGLLIK 92 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD- 130 ++ I + + FD + ++ G+ + D K RDFT NA+ + Sbjct: 93 RPVVASVVIHLPPYRYRFDFSQVK------GKDLEKALVEDLK----ERDFTANAIAVNL 142 Query: 131 --------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +Q V D GG+ D+ ++ I + + R D +RILR FR E + Sbjct: 143 DDVLSIGAKQTVVFDPTGGIKDMEQGLLRPISEENLR--RDPVRILRGFRLSVEK-ELKL 199 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 D ++ + +ERI E+ K+++ + +Y G+ +E+F Sbjct: 200 TEDFYRFVEVNRRLVTKAPAERITHELFKVMKHPRASKVVRKLYEVGLLEEVF 252 >gi|225849029|ref|YP_002729193.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644469|gb|ACN99519.1| poly A polymerase [Sulfurihydrogenibium azorense Az-Fu1] Length = 299 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 43/223 (19%) Query: 31 IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMR---------IFSKTRYKVIPTSI-SY 77 IVGG VRD L+N + DID T P V + IF + K + + I Sbjct: 54 IVGGWVRDRLINRPLGKNIDIDFIVTAPPMEVAKNLKKYINGSIFQFEKEKTVVSFIFQE 113 Query: 78 GTIKIICRKKYFDITTL-RSDLITDGRYAKVVFTRDWKADSLRRDFTINAL---YADQQG 133 Y DI+ + SDL + + K++ D L RDFTINA+ + D G Sbjct: 114 NDYNYRFDFSYLDISDIISSDLSYEEKEEKIL--DRLVQDLLSRDFTINAIAVNFDDTSG 171 Query: 134 ------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF-----------FAH 176 +ID G D++ ++ I + I++D +RILR +R F Sbjct: 172 LSASHTTLIDPSNGFKDIQEGIVRPI--SLENIVKDPVRILRGYRLSLELDFKLDKEFEK 229 Query: 177 YGEKNIDSDGLVASIKAK---KGLKILSSERIWSEINKLLEAK 216 + + N+D L S K + + LKI+S+E +S + KL E K Sbjct: 230 FVKNNVDL--LEKSPKERIRDELLKIVSNENSYSTLEKLKENK 270 >gi|66824633|ref|XP_645671.1| hypothetical protein DDB_G0271378 [Dictyostelium discoideum AX4] gi|60473880|gb|EAL71819.1| hypothetical protein DDB_G0271378 [Dictyostelium discoideum AX4] Length = 542 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 8/126 (6%) Query: 116 DSLRRDFTINALYADQQG-KVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 + LRRD TIN+L+ + K+ D+ G GL+DL N I+ + +L+D LR R RF Sbjct: 167 NCLRRDLTINSLFYNLNTLKIEDHSGYGLSDLENSIIRTPLEPLKTLLDDPLRAFRVIRF 226 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSS----ERIWSEINKLLEAKNP-LNAIVHMYNG 228 + + I+ L +IK +++S+ ERI+ E + ++ K+ + +I ++ + Sbjct: 227 ASRFQGFQIEQQ-LYNTIKFNLNKQLISNKVSKERIYKEFHLMMSNKSSVIQSIDYLIDT 285 Query: 229 GIFKEI 234 G+ I Sbjct: 286 GLINSI 291 >gi|330881710|gb|EGH15859.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 135 Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 14/140 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGGAVRD L+ V DID M + Y+ + T + + ++Y Sbjct: 6 VGGAVRDRLLGQPVTDIDWVVVGASTEDMLV---KGYRPVGTDFPV-FLHPLTNEEYALA 61 Query: 92 TTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + Y VF + D +RRD TINA+ D+ G + D G DL Sbjct: 62 RTERKSGVG---YGGFVFHASPEVTLEQDLIRRDLTINAMAEDKDGNLTDPYNGQKDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRI 167 R ++ + A ED LR+ Sbjct: 119 RILRHVSPA---FAEDPLRV 135 >gi|51892943|ref|YP_075634.1| putative poly A polymerase [Symbiobacterium thermophilum IAM 14863] gi|51856632|dbj|BAD40790.1| putative poly A polymerase [Symbiobacterium thermophilum IAM 14863] Length = 890 Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 26/164 (15%) Query: 32 VGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRYKVIPTSISYGTIKIICR-- 85 VGG VRD L+ D DI + R R + +P +GT I Sbjct: 499 VGGFVRDLLLGRPNLDFDIVVEGDGIAFAHSLARALGG-RVQEVP---RFGTAHIYLDAD 554 Query: 86 ----KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-----ADQQGKVI 136 D+ T R + V D D RRDF+INAL A G +I Sbjct: 555 DPDLPSRIDVATARREFYEHAAALPRVEHADLHEDLYRRDFSINALAIRLGSAGPSG-LI 613 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG 178 D+ GGL DL ++ + H + +ED R+LR RF YG Sbjct: 614 DFFGGLKDLAAGQVRIL----HTLSFVEDPTRLLRAVRFAHRYG 653 >gi|170085391|ref|XP_001873919.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651471|gb|EDR15711.1| predicted protein [Laccaria bicolor S238N-H82] Length = 514 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 34/174 (19%) Query: 90 DITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI-DYVG-GLNDLR 146 D+ LRS+ ++ R V D+ RRD TIN+++ + ++ D+ GL+DL Sbjct: 68 DLVNLRSEEYSETSRIPTEVLFGTPLEDARRRDITINSMFYNVHNHMVEDFTSKGLDDLH 127 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK-AKKGLKI------ 199 I+ +D LR+LR RF + +G + LVA IK A + +I Sbjct: 128 EGVIRTPLPPKETFRDDPLRVLRCIRFASRFGFE------LVADIKQAAQDSEIQNALVT 181 Query: 200 -LSSERIWSEINKLLE-----------------AKNPLNAIVHMYNGGIFKEIF 235 ++ ERI EI+K+++ ++PL++I ++ ++ IF Sbjct: 182 KVARERIGDEISKMMKGIVYSSFFENDFDYTHAGQDPLHSIRLIHELALYPSIF 235 >gi|317968539|ref|ZP_07969929.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. CB0205] Length = 410 Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 25/174 (14%) Query: 28 KSCIVGGAVRDSLMNL-------SVQDIDIATT--------ILPDRVMRIFSKTRYKVIP 72 + +VGG VRD L++ + D+D+ P+ + +F++ I Sbjct: 22 RCALVGGVVRDLLLHRHHEDPWRGLPDLDLVVEGRAADLVERFPEALRMVFAQPIPLQIQ 81 Query: 73 TSISYGTIKIICRKK-------YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 S+GT+++ DI + RS+ +V D RRDFT+N Sbjct: 82 EHGSFGTLELELDLPEGQGGTWLLDIASARSERYPQPGENPLVSPGLLDEDLARRDFTVN 141 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 ++ ++G+++D G DL R ++F+ + + +D R++R R+ A G Sbjct: 142 SMALTLERGQLLDPHRGQQDLSARQLRFLHP--NSVSDDPTRLVRAARYAARLG 193 >gi|170055267|ref|XP_001863507.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167875251|gb|EDS38634.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 182 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 ++ + W+ P FP+ G+ ++++G P G K+G ++ K W + F +S+ DL Sbjct: 111 ELYGQLKEWQIPAFPIKGNVLIEHGAPKGPKLGLVMNELKMVWAANQFDMSEPDL 165 >gi|258591465|emb|CBE67766.1| putative Uncharacterized domain HDIG [NC10 bacterium 'Dutch sediment'] Length = 503 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 29/195 (14%) Query: 31 IVGGAVRDSLMNLSV---QDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGG +RD L+ S D+D+ P+R R + + + T++ I R Sbjct: 35 LVGGYLRDLLLGRSRVRRADLDLVVWGEPERFGRNLVDSLEGSL-VRLDQETVRTIIRSA 93 Query: 88 ----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD----QQGKVIDYV 139 DI+ + + I +AD + RDFT+NAL +VID Sbjct: 94 GAIVQIDISRPKGETI--------------EADLVARDFTVNALAVRLDTLHPLRVIDPT 139 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GGLNDL+ + ++ I A D LR++R R A + I+ + I+ L Sbjct: 140 GGLNDLKEKRLRAI--APSAFDRDPLRLIRAVRLAAEL-DFTIEEHTRRSIIERAPLLGT 196 Query: 200 LSSERIWSEINKLLE 214 + ER+ E+ ++L+ Sbjct: 197 AAGERLRDELFRILD 211 >gi|87302005|ref|ZP_01084839.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. WH 5701] gi|87283573|gb|EAQ75528.1| tRNA nucleotidyltransferase/poly(A) polymerase [Synechococcus sp. WH 5701] Length = 440 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 36/185 (19%) Query: 28 KSCIVGGAVRDSLMN-------LSVQDIDI--------ATTILPDRVMRIFSKT---RYK 69 + +VGGAVRD L++ + D+D+ T R+ R+ ++ + Sbjct: 24 RVALVGGAVRDLLLHRVHRDPWRGLPDLDLVVEQPGSEPGTPAAHRIARLLAELLGHNLR 83 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA--- 126 +GT ++ D+ T R + + V D RRD +INA Sbjct: 84 RCQLHEEFGTAELDIDGVLLDLATARREWYAEPGANPSVSYGSLADDLARRDLSINAIAL 143 Query: 127 -LYADQ------------QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 L A+Q + +++D GG DL R ++F+ H + +D RI+R R+ Sbjct: 144 LLDAEQLEQAEAAHADVLESQLLDPFGGREDLAARRLRFLHG--HSLQDDPTRIVRAARY 201 Query: 174 FAHYG 178 A G Sbjct: 202 SARLG 206 >gi|124024926|ref|YP_001014042.1| poly A polymerase family protein [Prochlorococcus marinus str. NATL1A] gi|123959994|gb|ABM74777.1| Poly A polymerase family [Prochlorococcus marinus str. NATL1A] Length = 395 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 23/136 (16%) Query: 29 SCIVGGAVRDSLMN-LSVQ-DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 S +VGG+VRD L+ LS + D+D ++P + K+ T I + I R Sbjct: 32 SALVGGSVRDGLLKKLSPKPDLDF---VIPVNAIEFSENLSKKIHATFIKLDEKRDIAR- 87 Query: 87 KYFDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTINA--LYADQQGKVIDYVGG 141 L+ +G +A+ V + K D LRRDF INA L ++ ++ D +GG Sbjct: 88 -----------LVINGWTLDFARQV-GENLKDDLLRRDFRINAIALKLREKPEIFDPMGG 135 Query: 142 LNDLRNRTIKFIGDAH 157 ++DL+N I I + + Sbjct: 136 MDDLKNNKIVAISEKN 151 >gi|300088554|ref|YP_003759076.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528287|gb|ADJ26755.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 503 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 38/189 (20%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTRYKVIPTSISYGTIKIICRK 86 S IVGG +RD+ + D+D+A D + R+ + + K P G +I Sbjct: 33 PSAIVGGFIRDARLGQPSTDLDLAVFGNADELASRLAVELQGKAFPLHTESGMYRITLLP 92 Query: 87 ----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG--------K 134 + D++ +L D RRDFT NA+ A G Sbjct: 93 ETGFRQLDLSAAVGEL---------------SQDLGRRDFTANAVGAPLSGYDPATGRLA 137 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKNIDSD-G 186 + D +GGL+D+ + ++ + R D R+LR R A G E I ++ G Sbjct: 138 LTDPLGGLDDIDRKILRAVSAGVFR--RDPARLLRAARLSAELGFTIAADTETAIRTEAG 195 Query: 187 LVASIKAKK 195 LVA++ ++ Sbjct: 196 LVATVAGER 204 >gi|326509581|dbj|BAJ87006.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 391 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 113 WKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 WK + RDFTIN L + K+ DY+GG+ D++ ++ + A ED RILR Sbjct: 48 WK-NCQGRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAATSFHEDCARILRAI 106 Query: 172 RFFAHYG 178 R A G Sbjct: 107 RIAARLG 113 >gi|94264847|ref|ZP_01288623.1| Polynucleotide adenylyltransferase region [delta proteobacterium MLMS-1] gi|93454728|gb|EAT04989.1| Polynucleotide adenylyltransferase region [delta proteobacterium MLMS-1] Length = 468 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 17/157 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDR-----VMRIFSKTR-YKVIPTSISYGTIKIICR 85 VGG VRD L+ D+D+ R R+ + R +K T++ +K+ Sbjct: 74 VGGFVRDLLLQEKNFDLDLVVEGDGVRFADALARRLGGRVRIHKKFKTAV----VKLPDG 129 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 +K D+ T R + V K D RRDF+INAL D G ++D+ G Sbjct: 130 RK-IDVATARLEYYDYPAALPTVELSSLKLDLYRRDFSINALAIDVNPETFGTLVDFFNG 188 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NDL+++ ++ + + +ED RI R RF G Sbjct: 189 QNDLKDKKLRVLHNLS--FVEDPTRIFRAIRFEQRMG 223 >gi|194476947|ref|YP_002049126.1| tRNA nucleotidyltransferase/poly(A) polymerase [Paulinella chromatophora] gi|171191954|gb|ACB42916.1| tRNA nucleotidyltransferase/poly(A) polymerase [Paulinella chromatophora] Length = 410 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 33/176 (18%) Query: 28 KSCIVGGAVRDSLMNL-------SVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS---- 76 + +VGG VRD L++ ++D+D++ + SK + +S Sbjct: 17 RMALVGGVVRDWLLHRMHRDPWNGLRDLDLSIET------QTVSKFNVSCLAQELSNYYY 70 Query: 77 -----------YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 YG++++ D+TT R + + +V ++D RRD ++N Sbjct: 71 REVTLCQYYEQYGSVEMNISGISIDLTTARQEYYPSPGFNPIVDFNTLESDLARRDLSLN 130 Query: 126 AL---YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 A+ + +++D GG +DL ++F+ + + +D R++R R+ A +G Sbjct: 131 AMALVFEKGHWELLDLHGGQSDLAMGWLEFLSETS--VADDPTRLVRAARYGAKFG 184 >gi|326518838|dbj|BAJ92580.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 340 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 113 WKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 WK + RDFTIN L + K+ DY+GG+ D++ ++ + A ED RILR Sbjct: 61 WK-NCQGRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAATSFHEDCARILRAI 119 Query: 172 RFFAHYG 178 R A G Sbjct: 120 RIAARLG 126 >gi|94266573|ref|ZP_01290257.1| CBS:Phosphoesterase, RecJ-like:Polynucleotide adenylyltransferase region:Phosphoesterase, DHHA1 [delta proteobacterium MLMS-1] gi|93452791|gb|EAT03323.1| CBS:Phosphoesterase, RecJ-like:Polynucleotide adenylyltransferase region:Phosphoesterase, DHHA1 [delta proteobacterium MLMS-1] Length = 881 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 17/157 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDR-----VMRIFSKTR-YKVIPTSISYGTIKIICR 85 VGG VRD L+ D+D+ R R+ + R +K T++ +K+ Sbjct: 487 VGGFVRDLLLQEKNFDLDLVVEGDGVRFADALARRLGGRVRIHKKFKTAV----VKLPDG 542 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 +K D+ T R + V K D RRDF+INAL D G ++D+ G Sbjct: 543 RK-IDVATARLEYYDYPAALPTVELSSLKLDLYRRDFSINALAIDVNPETFGTLVDFFNG 601 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NDL+++ ++ + + +ED RI R RF G Sbjct: 602 QNDLKDKKLRVLHNLS--FVEDPTRIFRAIRFEQRMG 636 >gi|153823791|ref|ZP_01976458.1| poly(A) polymerase [Vibrio cholerae B33] gi|126518690|gb|EAZ75913.1| poly(A) polymerase [Vibrio cholerae B33] Length = 172 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 13/139 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR----- 67 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 36 ENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRR 95 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA---DSLRRDFTI 124 +++ +++ + + ++ ++ ++ + D+ RRDFTI Sbjct: 96 FRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTI 155 Query: 125 NALY---ADQQGKVIDYVG 140 NA+Y AD + DY G Sbjct: 156 NAMYYNIADY--SIHDYAG 172 >gi|94269324|ref|ZP_01291432.1| CBS:Phosphoesterase, RecJ-like:Polynucleotide adenylyltransferase region:Phosphoesterase, DHHA1 [delta proteobacterium MLMS-1] gi|93451263|gb|EAT02156.1| CBS:Phosphoesterase, RecJ-like:Polynucleotide adenylyltransferase region:Phosphoesterase, DHHA1 [delta proteobacterium MLMS-1] Length = 881 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 17/157 (10%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDR-----VMRIFSKTR-YKVIPTSISYGTIKIICR 85 VGG VRD L+ D+D+ R R+ + R +K T++ +K+ Sbjct: 487 VGGFVRDLLLQEKNFDLDLVVEGDGVRFADALARRLGGRVRIHKKFKTAV----VKLPDG 542 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 +K D+ T R + V K D RRDF+INAL D G ++D+ G Sbjct: 543 RK-IDVATARLEYYDYPAALPTVELSSLKLDLYRRDFSINALAIDVNPETFGTLVDFFNG 601 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 NDL+++ ++ + + +ED RI R RF G Sbjct: 602 QNDLKDKKLRVLHNLS--FVEDPTRIFRAIRFEQRMG 636 >gi|222628784|gb|EEE60916.1| hypothetical protein OsJ_14629 [Oryza sativa Japonica Group] Length = 555 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 113 WKADSLRRDFTINAL-YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 WK + RDFTIN L + K+ DY GG+ D++ ++ + A ED RILR Sbjct: 213 WK-NCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQEDCARILRAI 271 Query: 172 RFFAHYG 178 R A G Sbjct: 272 RIAARLG 278 >gi|159469313|ref|XP_001692812.1| chloroplast-targeted ntr II family protein [Chlamydomonas reinhardtii] gi|158278065|gb|EDP03831.1| chloroplast-targeted ntr II family protein [Chlamydomonas reinhardtii] Length = 771 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 14/98 (14%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-TRYKVIPTSISYGTIKIICRKKYFD 90 GG VRD + DIDI T V +F + ++K T+++ F+ Sbjct: 300 AGGWVRDQFLGRPSPDIDIVTNASITEVYEVFRRDCKHK------GAATMEVTADGLAFE 353 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +T+ R L+ D A +W+ D+ RDFT NAL+ Sbjct: 354 VTSYRGGLVGDCEEA------EWR-DAAYRDFTCNALF 384 >gi|320107144|ref|YP_004182734.1| polynucleotide adenylyltransferase region [Terriglobus saanensis SP1PR4] gi|319925665|gb|ADV82740.1| Polynucleotide adenylyltransferase region [Terriglobus saanensis SP1PR4] Length = 583 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 14/212 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDI---ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 + GGAVRD V+D+D+ + + + F+ + Y T R + Sbjct: 36 LTGGAVRDLTGGAPVRDLDVTVQGNALSLRKEIEKFASIDGEYDLAQSLYVTFPGGVRVE 95 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN----ALYADQQGKVIDYVGGLN 143 +TL YA D + RRDFT N +L G ++D + G+ Sbjct: 96 VSSASTLTFPKPGKPVYAPASILDDLR----RRDFTANSMAISLNDGSYGLLMDPLNGVA 151 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSS 202 D+ NR ++ + +++ +ED +R+LR R A G + + K + + LS Sbjct: 152 DIENRELRLV--SNYGFIEDPIRLLRAIRLGARLGWHMEERTQARYNTAKEEGYISALSP 209 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 E+ ++ ++P+ A+ + G KE+ Sbjct: 210 WERGYELEEIAHEEDPIRAMRMLEAEGWMKEL 241 >gi|33866784|ref|NP_898343.1| poly A polymerase family protein [Synechococcus sp. WH 8102] gi|33639385|emb|CAE08769.1| Poly A polymerase family [Synechococcus sp. WH 8102] Length = 396 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 167/378 (44%), Gaps = 53/378 (14%) Query: 28 KSCIVGGAVRDSLMN-LSVQ-DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 ++ +VGGAVRD+L++ L Q D+D+ ++P + + ++ G+ ++ + Sbjct: 31 EAVLVGGAVRDALLDRLKPQPDLDL---VVPSGALALTCTLANRL------GGSCVVLDQ 81 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG--KVIDYVGGLN 143 ++ LR + R +AD RRD+ INA+ G ++ID GGL Sbjct: 82 ERDMARLVLRGWTVDIARQDGASL----EADLQRRDYRINAIALPLNGPAQLIDPTGGLA 137 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS--IKAKKGLKILS 201 DL+ + + +++ + +D LR+LR R A E + D + A + ++ L + Sbjct: 138 DLQQGWLTAVRESN--LTDDPLRLLRGLRLMA---EIPLSLDPMTAGWMRRHRQQLTQAA 192 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQLSQVI-EAEQVFEWK 259 ERI +E+ KL+ AI + + + D S+D + E EQ Sbjct: 193 PERILAELQKLVAGPLADQAIEQLCQLELIQPWAADQPLPTSVDTIQMTTDEQEQAL--- 249 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL-FY 318 L R LIS Q + + + S R + + ++PE +++ + Sbjct: 250 --PLARLTALISDQGLEQL-----RGSRALRQRCRRLRQWQRRLPDDPETLPEGERVQLH 302 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF----PLTGDDVVK-Y 373 L D+ + A + L L HQ TC+ LQ D + PLF P+ G + + Sbjct: 303 LDLDRDLAA---LILQLEP---AHQ-TCW-LQRWRDS---EDPLFHPASPVDGTTLQREL 351 Query: 374 GIPPGKKVGNILVHCKQE 391 + PG ++G++L+H +QE Sbjct: 352 KLAPGPRLGDLLMHLRQE 369 >gi|213621650|ref|ZP_03374433.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 136 Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 38 LKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCR 89 >gi|315058243|gb|ADT72572.1| tRNA nucleotidyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 335 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 41/236 (17%) Query: 40 LMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD- 97 + L + D DI I P +I K + +G + + K +D+ R++ Sbjct: 2 FLGLKICDYDIELYDIKPKDFEKIMQKL------GAQGFGKSFFVYKFKNYDLALARTEN 55 Query: 98 LITDGRYA-KVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDLRNRTIKF 152 I+ G +V D K + RRDFTIN+ L+ D+ +D+ GGL DL ++ Sbjct: 56 KISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFNDE---FLDFYGGLKDLEAGFLRH 112 Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI--LSSERIWSEIN 210 I + ED LR+LR F + + K I S+ S+K + + I LS +RI +E+ Sbjct: 113 IDKQSFQ--EDSLRVLRAVVFASRFNFK-ITSE----SLKLMQSMDITDLSKDRINAELY 165 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE-WKIDSLLR 265 K K+P + + Y +QE+ L++ QV E VF+ + +LLR Sbjct: 166 KFF--KSPRLDVGYRY-----------LQELGLEK--QVFGFESVFKSLEFQNLLR 206 >gi|213586557|ref|ZP_03368383.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 129 Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 21 LKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCR 72 >gi|153872945|ref|ZP_02001694.1| poly(A) polymerase [Beggiatoa sp. PS] gi|152070590|gb|EDN68307.1| poly(A) polymerase [Beggiatoa sp. PS] Length = 161 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + +L LNK ++ +VGG VRD L+ +D D+ T LP+++ IF R Sbjct: 76 LTVLYQLNKAGYQAFLVGGGVRDVLLGRVPKDFDVVTNALPEQIKNIFRSCR 127 >gi|119484726|ref|ZP_01619208.1| polyA polymerase [Lyngbya sp. PCC 8106] gi|119457544|gb|EAW38668.1| polyA polymerase [Lyngbya sp. PCC 8106] Length = 418 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 36/161 (22%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 + +VGGAVRD L+ +D+ +L + T + I K Sbjct: 24 PAYLVGGAVRDGLLGRKADYLDLDFVLLGQAIH------------------TAQNIA--K 63 Query: 88 YFDITTLRSDLITDGRYAKVVF---TRDW---KADSL-----RRDFTINAL-YADQQGKV 135 Y+ + D + + A+VVF T D+ +A+SL RRDFT+NA+ Y ++ Sbjct: 64 YYKAGFVLLD--AERQIARVVFPGATVDFAQAQANSLAQDLQRRDFTLNAIAYNPFTQEL 121 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 ID G D++NR I+ I + R +D LR+LR +R A Sbjct: 122 IDPHKGQTDIQNRLIRMISAQNLR--DDPLRLLRGYRQAAQ 160 >gi|322435119|ref|YP_004217331.1| Polynucleotide adenylyltransferase region [Acidobacterium sp. MP5ACTX9] gi|321162846|gb|ADW68551.1| Polynucleotide adenylyltransferase region [Acidobacterium sp. MP5ACTX9] Length = 654 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 116 DSLRRDFTINALYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFT NA+ G ++D + G+ D+ NR ++ + +++ +ED +R++R Sbjct: 121 DLRRRDFTANAMALSLNDGSYGLLMDPLNGVADIENRQLRLV--SNYGFIEDPIRMVRAA 178 Query: 172 RFFAHYG 178 R+ A G Sbjct: 179 RYMARLG 185 >gi|330881707|gb|EGH15856.1| multifunctional tRNA nucleotidyl transferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 274 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 165 LRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223 +R+ RF +A YG ++ GL+ + LK L++ER W EI++ L + P I Sbjct: 1 MRVARFAARYARYGFTIAPETLGLMRQLSESGELKALTAERSWKEISRALMEEQPQVFIQ 60 Query: 224 HMYNGGIFKEIFLDVQEI 241 +++ G KE+ +V+ + Sbjct: 61 VLHDCGALKELMPEVEAL 78 >gi|88800681|ref|ZP_01116240.1| Poly(A) polymerase [Reinekea sp. MED297] gi|88776545|gb|EAR07761.1| Poly(A) polymerase [Reinekea sp. MED297] Length = 119 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + +L L ++ +VGG VRD + LS +D D+AT P++V ++FS +R Sbjct: 40 LKVLYRLQNSGHEAYLVGGCVRDLQLGLSPKDFDVATDATPEQVRKLFSNSR 91 >gi|242091169|ref|XP_002441417.1| hypothetical protein SORBIDRAFT_09g026295 [Sorghum bicolor] gi|241946702|gb|EES19847.1| hypothetical protein SORBIDRAFT_09g026295 [Sorghum bicolor] Length = 384 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 8/141 (5%) Query: 102 GRYAKVVFTRDWKADSL-RRDFTINALYADQQGKVI-DYVG-GLNDLRNRTIKFIG-DAH 157 G V R + ++ L D TIN+L + V+ D G G +D++NR I Sbjct: 126 GSAQSCVMERPYDSEDLYHADLTINSLVYNINDSVVQDITGRGFDDIKNRLIITTSLPPL 185 Query: 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI---LSSERIWSEINKLLE 214 IL+D L ILR F + +D D + A + ++ +S ERI E++ +L Sbjct: 186 SSILKDPLIILRSIHFASQL-NFTLDEDLMRAGGDTRLRRELCSRVSRERINREVSLMLV 244 Query: 215 AKNPLNAIVHMYNGGIFKEIF 235 +K+P+ A+ ++ G+F+ +F Sbjct: 245 SKHPVMAMKYIEEMGLFRVVF 265 >gi|78213900|ref|YP_382679.1| poly A polymerase family protein [Synechococcus sp. CC9605] gi|78198359|gb|ABB36124.1| poly A polymerase family protein [Synechococcus sp. CC9605] Length = 397 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 24/207 (11%) Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR- 85 + + +VGGAVRD L+N + D+ ++P + + ++ T + + I R Sbjct: 31 EGTALVGGAVRDGLLNRLQEQPDL-DLVVPSDAIALTKALAQELDGTCVVLDAERNIARL 89 Query: 86 ---KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--GKVIDYVG 140 DI D I D D RRD+ +NA+ Q G++ D G Sbjct: 90 VLGGWTVDIARQDGDRIED--------------DLWRRDYRLNAIAVSLQPWGELWDPTG 135 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 GLNDL+ + + A+ +++D LR+LR R A I S + + L Sbjct: 136 GLNDLQQGCLTAVSQAN--LIDDPLRLLRGLRLMAEI-PLTITSQTMGWIERHAARLPEA 192 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYN 227 + ERI +E+ +L+ K+ AI + + Sbjct: 193 APERILAELQRLVRGKHADAAIAALRS 219 >gi|328462375|gb|EGF34435.1| tRNA CCA-pyrophosphorylase [Lactobacillus rhamnosus MTCC 5462] Length = 44 Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 25/33 (75%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +GG+VRD+L+ L + D+DIA++ P+ + RI S Sbjct: 1 MGGSVRDALLGLPIHDVDIASSAYPEEIKRILS 33 >gi|237751938|ref|ZP_04582418.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Helicobacter winghamensis ATCC BAA-430] gi|229376697|gb|EEO26788.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Helicobacter winghamensis ATCC BAA-430] Length = 415 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 26/221 (11%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ L ++D D V FS+ + +P + + +K Sbjct: 12 LVGGAVRDGLLKLPIKD--------KDYVAVGFSEEDFAHLPKVGK--SFPVFLQKDGSQ 61 Query: 91 ITTLRSDLITDGRY-------AKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGL 142 I R + T Y +V D K RRD T+NA+ D+ + D G Sbjct: 62 IALARREKKTQHGYNGFSIETQQVSLYEDLK----RRDLTLNAIAFDETTQTYYDPFNGK 117 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILS 201 DL N+ ++ I +A ED LR+LR R A G E I V K + L L Sbjct: 118 KDLENKILRHISEA---FCEDPLRVLRAARLRARLGMEWKIHQSTKVLIYKMRDELCYLE 174 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 R++ E+ L +N ++ G+ IF + ++ Sbjct: 175 KNRVYKEVESALLGQNSHLFFESLFELGVLDMIFPSIYALT 215 >gi|251772287|gb|EES52857.1| putative polyA polymerase family protein [Leptospirillum ferrodiazotrophum] Length = 452 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%) Query: 116 DSLRRDFTINALYAD----QQG--KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 DS RRDF +NALY + ++G +++D GG DL R + I ED RI R Sbjct: 133 DSRRRDFPMNALYLEWDPTRKGFRRLLDPFGGERDLALRMVSLI--RPEAFSEDPTRIFR 190 Query: 170 FFRFFAHYGEKNIDSD-----GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 + R + + S L ++K + R+ E+ +L K+PL AI Sbjct: 191 WARLASRL---RLTSSYELLLALRTAVKDPSLWHEVGGARVSGEMERLQREKDPLAAISL 247 Query: 225 MYNGGIFKEI 234 +++ F + Sbjct: 248 LFSSNAFASL 257 >gi|188996967|ref|YP_001931218.1| Polynucleotide adenylyltransferase region [Sulfurihydrogenibium sp. YO3AOP1] gi|188932034|gb|ACD66664.1| Polynucleotide adenylyltransferase region [Sulfurihydrogenibium sp. YO3AOP1] Length = 474 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 36/220 (16%) Query: 31 IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMR---------IFSKTRYKVIPTSI-SY 77 +VGG VRD ++N + DID T P +V+ IF + K + T + Sbjct: 55 LVGGWVRDRIINRPIGENIDIDFIITADPLQVVNNLKKFIKGDIFQFEKEKKVATFLFKE 114 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD------- 130 Y DI+ + S+ D + + D L RDFTINA+ + Sbjct: 115 NNYNYRFDFSYLDISDILSNPDIDFYQKEELILERLIKDLLERDFTINAIAVNFDDTSSL 174 Query: 131 --QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKN 181 +ID G DL++ I+ I + I++D +RILR +R EK Sbjct: 175 SASTTVLIDPSNGFKDLQDGIIRPI--SIENIIKDPVRILRGYRLALELDFTIDKEFEKF 232 Query: 182 IDSDGLVASIKAKKG-----LKILSSERIWSEINKLLEAK 216 + ++ + K+ LKI+S+E +NKLLE K Sbjct: 233 VKNNPNLIEKSPKERIRDELLKIISNENSKDTLNKLLENK 272 >gi|94986682|ref|YP_594615.1| polyA polymerase family protein [Lawsonia intracellularis PHE/MN1-00] gi|94730931|emb|CAJ54294.1| polyA polymerase family protein [Lawsonia intracellularis PHE/MN1-00] Length = 557 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 76/346 (21%), Positives = 146/346 (42%), Gaps = 40/346 (11%) Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA--LYADQQ--GKVIDYVGGLNDL 145 DI T R + +V + D RRD TINA L +Q+ G++ID+ G + Sbjct: 217 DIATARLEYYAMPGALPLVEPTSIEQDLFRRDITINAMALQLNQKYFGRLIDHFHGQKAI 276 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSE 203 +N++I I +ED RI+R RF Y + + ++K KI + Sbjct: 277 QNKSIDVIHSL--SFIEDPTRIIRAIRFEQRYQFRISQQTEKYMHYALKCNVIEKIFG-Q 333 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-----FLDVQEISLDQLSQVIE---AEQV 255 R+ E + + P I+ M G+ I Q+ +S +++ + + Sbjct: 334 RLLHEFEMIFKENKPDACIIRMDELGVLTAIDKRFSLTSKQKTLFYNISNILQWYHSLNL 393 Query: 256 FEWKIDSLLRFIV-LISWQDKKSILSM----------AKKFSLPREIRYFLISFFNCNFN 304 E + D ++ ++ + S ++ I+++ KK +L + + S C + Sbjct: 394 TENQPDIMIIYLTAMCSSLSQEQIIALLQKIGVESAYQKKIALTLSMAQDMDSTLCCLLH 453 Query: 305 QKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK--KP 361 +K + + +F L L++ L L + + T FI Q +S W+ KP Sbjct: 454 EKKIEKEGPVSTIFTLLSK----LTLEVLLFLQAFSYSSSVTYFISQYIS---LWRFIKP 506 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +TG+D+ K G+ PG + IL ++ ++ + +++L +L Sbjct: 507 Y--ITGNDLKKLGLVPGPQYKVILEDVLKQKLDGNVHTKEDELDYL 550 >gi|297569286|ref|YP_003690630.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfurivibrio alkaliphilus AHT2] gi|296925201|gb|ADH86011.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfurivibrio alkaliphilus AHT2] Length = 510 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 45/220 (20%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 L +G + GGA+RD L+ S ++ A + D + + + G Sbjct: 22 LRRRGAPPLYLAGGALRDWLVGGSRPAVEAAAGLGRDLDFTLPAGAVAFARDLAGELGGT 81 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA----DSLRRDFTINALY-------- 128 ++ +++ D+ + L+ GR R+ A D RRDFTINA+ Sbjct: 82 LVVLDREH-DV----ARLVWQGRELDFAAFREGAASIEEDLRRRDFTINAMAWRLNPAGE 136 Query: 129 -----------ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH- 176 A G+++D GL DL+ I+ G + D LR+LR +RF A Sbjct: 137 PVALPSAASVKAAAPGRLLDPCDGLADLQAGVIRVTGP--NAFAADPLRLLRAYRFQASL 194 Query: 177 ------YGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 +K I S+ L+ + +++ERI +E++ Sbjct: 195 RFALDPATDKLISSNALM--------IDTVAAERIVAELD 226 >gi|299136798|ref|ZP_07029981.1| Polynucleotide adenylyltransferase region [Acidobacterium sp. MP5ACTX8] gi|298601313|gb|EFI57468.1| Polynucleotide adenylyltransferase region [Acidobacterium sp. MP5ACTX8] Length = 598 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 19/131 (14%) Query: 116 DSLRRDFTINA----LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFT NA L G ++D + G+ D+ NR ++ + +++ +ED R++R Sbjct: 121 DLRRRDFTANAMAISLNEGSYGLLMDPLNGVADIDNRELRLV--SNYGFIEDPARMIRAA 178 Query: 172 RFFAHYG-------EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 RF A G ++ D+ I A + S+ER + E ++ ++PL + Sbjct: 179 RFGARLGWHMEEKTQQRYDTGKAEGYISA-----MDSAERGY-ETEEIFHEEDPLRVLRR 232 Query: 225 MYNGGIFKEIF 235 + + G K +F Sbjct: 233 LESEGWNKFLF 243 >gi|328950700|ref|YP_004368035.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Marinithermus hydrothermalis DSM 14884] gi|328451024|gb|AEB11925.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Marinithermus hydrothermalis DSM 14884] Length = 438 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 28/208 (13%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI-----SYGTIKIICR 85 +VGGAVRD + D D + P R+ + K + S + G +++ Sbjct: 22 LVGGAVRDLWLGRHPADFDF-VVLDP----RLEATRAAKTLGGSAFLLDEARGHWRVVKE 76 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 D T L + + D LRRDFT+NAL A+Q+G V+ +DL Sbjct: 77 GLTLDYTPLPPGGLVE--------------DLLRRDFTVNALAANQRGLVLGPSLARHDL 122 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLVASIKAKKGLKILSSE 203 + ++ + + D LR LR R G K + + A +A + + E Sbjct: 123 AHGWLRAV--RRQNLWADPLRSLRAVRLAYTLGLKLEARTARWVRAHAEALRFSTRPAWE 180 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIF 231 R+ E+ KLL + N + + G+ Sbjct: 181 RVRDELEKLLASPYAANGFLELERRGLL 208 >gi|83590210|ref|YP_430219.1| polynucleotide adenylyltransferase region [Moorella thermoacetica ATCC 39073] gi|83573124|gb|ABC19676.1| Polynucleotide adenylyltransferase region [Moorella thermoacetica ATCC 39073] Length = 383 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 9/197 (4%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG RD L+ D+D+ + R ++ + + T I + D Sbjct: 32 LVGGTTRDLLLGRPDVDLDLVVEGNGLLLARELARQLGGRLVYHERFLTATIYWAGERVD 91 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA----LYADQQGKVIDYVGGLNDLR 146 + T R + + V D RRDF+INA L A ++ D G DL Sbjct: 92 VVTARKEYYPEPGALPEVEAATLAEDLARRDFSINAMALPLTARDLWEIRDPFNGRADLA 151 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFA--HYGEKNIDSDGLVASIKAKKGLKILSSER 204 I+ + A R +D RILR R H+ + ++ L A L+++S R Sbjct: 152 AGKIRVLHQASFR--DDPTRILRGVRLGTRLHF-QLASETRELAREALAAGYLELVSPRR 208 Query: 205 IWSEINKLLEAKNPLNA 221 W E LL+ P+ A Sbjct: 209 FWQEFILLLKESRPVAA 225 >gi|256828447|ref|YP_003157175.1| tRNA adenylyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256577623|gb|ACU88759.1| tRNA adenylyltransferase [Desulfomicrobium baculatum DSM 4028] Length = 367 Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 38/198 (19%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP--TSISYGTIKIICR--K 86 +VGGAVRD + D+D +R +R + +P T + G I + R + Sbjct: 5 LVGGAVRDQVRGQEPVDLDFVAIGGDERELR-------QRVPGLTRVGQG-IPVFVRGSR 56 Query: 87 KYF--DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 +Y D +++ DL + RD TINAL D+ G+++ + L+D Sbjct: 57 QYTLSDFSSIEDDLCS-------------------RDLTINALARDESGEIVAHPRALSD 97 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSS 202 L + ++ + A+ L D LR +R RF A + + + + LV +++ + L +++ Sbjct: 98 LHEKILRPVAPAN--FLADPLRAIRAARFAAAFPDFAVHAQ-LVEAMRGVTVEALAQVAA 154 Query: 203 ERIWSEINKLLEAKNPLN 220 ER+ E+ K A P N Sbjct: 155 ERVGQEVLKACAASVPGN 172 >gi|118443843|ref|YP_879215.1| polyA polymerase family protein [Clostridium novyi NT] gi|118134299|gb|ABK61343.1| polyA polymerase family protein [Clostridium novyi NT] Length = 457 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 20/214 (9%) Query: 31 IVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 I+GG +RD L+N + +D+DI + + + ++ + I Sbjct: 21 IIGGYIRDKLLNTKEASKDLDIIYNGDIKLFLDKLTMDGFHIVTLKDEQQIYRAILNDIT 80 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 DI ++ + I + D +RDFTINA+ K+ID G L Sbjct: 81 VDIALIKGESIEE--------------DLSKRDFTINAIALKLIDNKIIDPFNGRRHLNA 126 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 + I + + + I +D +RILR +RF YG + + I K + ERI++ Sbjct: 127 KLIHTVNE--NSISDDSVRILRAYRFAIKYG-MHFSKECEKQIIDNKHNIMKFPKERIFN 183 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E ++++ A + G+ K + + E+ Sbjct: 184 EFMQIIKCDKFGRAFEELDTLGVLKNLLPYIDEL 217 >gi|40062655|gb|AAR37576.1| acetylglutamate kinase [uncultured marine bacterium 313] Length = 290 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%) Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NA+Y Q+ K + YVG + N+ IK D +D++ I+ NI++ Sbjct: 138 NAIYVQQKNKELGYVGSPTRIDNKLIKNFID------KDFVPIVTPMGLDEKMRAYNINA 191 Query: 185 D----GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN----GGIFKEI 234 D L S+K+++ L + E +++E NKL+ P A +YN GG+ +I Sbjct: 192 DTVAGALAVSLKSRRLLLMTDVEGVYNENNKLISEIKPTEAEKLIYNQTIHGGMIPKI 249 >gi|206895876|ref|YP_002247140.1| polyA polymerase family protein, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738493|gb|ACI17571.1| polyA polymerase family protein, putative [Coprothermobacter proteolyticus DSM 5265] Length = 705 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICRKKY 88 +VGGA+RD L+ + DID+ +++ + Y + ++S +K Sbjct: 423 LVGGAIRDYLLGKTPDDIDLCFEGDIEKICLALDELGVGYDMFGKTLS---VKCEWNGTK 479 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN--ALYADQQGKVIDYVGGLNDLR 146 + T R DL V D RRDFTIN AL ++D GL+DL+ Sbjct: 480 VEFTRARKDLYKSPGVLAEVEPATILEDLERRDFTINAIALQLTPGVSILDPFQGLDDLK 539 Query: 147 NRTIKFI 153 +R I+ I Sbjct: 540 DRVIRLI 546 >gi|284044978|ref|YP_003395318.1| polynucleotide adenylyltransferase region [Conexibacter woesei DSM 14684] gi|283949199|gb|ADB51943.1| Polynucleotide adenylyltransferase region [Conexibacter woesei DSM 14684] Length = 448 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 12/153 (7%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGGAVRD L+ D+D+ V + + +GT + +D Sbjct: 32 VVGGAVRDLLLGGQPLDLDLVVDGDVVAVASRLADGLGGELQVHDRFGTATVTAGGCSYD 91 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSL-----RRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ YA+ D + +L RRDFT+NA+ G+ +DL Sbjct: 92 LVRARAET-----YARPGALPDVRPGTLAEDLRRRDFTVNAIAVTLGGRFETVPEAFDDL 146 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 R ++ + DA R +D R+LR R+ G Sbjct: 147 VARRLRVLHDASFR--DDPTRLLRLVRYATRLG 177 >gi|195343783|ref|XP_002038470.1| GM10596 [Drosophila sechellia] gi|194133491|gb|EDW55007.1| GM10596 [Drosophila sechellia] Length = 188 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 L++ + + W KP FP+ G+ + ++G+ G ++G ++ K W +S FQL+ +DL Sbjct: 112 LELYNQLKSWVKPDFPIRGNALAQHGLN-GVRLGLVMDELKLLWADSDFQLTHDDL 166 >gi|237755853|ref|ZP_04584450.1| poly A polymerase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691989|gb|EEP61000.1| poly A polymerase [Sulfurihydrogenibium yellowstonense SS-5] Length = 301 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 36/220 (16%) Query: 31 IVGGAVRDSLMNLSVQ---DIDIATTILPDRVMR---------IFSKTRYKVIPTSI-SY 77 +VGG VRD ++N + DID T P +V+ IF + K + T + Sbjct: 55 LVGGWVRDRIINRPIGENIDIDFIITADPLQVVNNLKKFIKGDIFQFEKEKKVATFLFKE 114 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD------- 130 Y DI+ + S+ D + D L RDFTINA+ + Sbjct: 115 NNYNYRFDFSYLDISDILSNPDIDFYQKEESILERLIKDLLERDFTINAIAVNFDDTSSL 174 Query: 131 --QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG-------EKN 181 +ID G DL++ I+ I + I++D +RILR +R EK Sbjct: 175 SASTTVLIDPSNGFKDLQDGIIRPI--SIENIIKDPVRILRGYRLALELDFTIDKEFEKF 232 Query: 182 IDSDGLVASIKAKKG-----LKILSSERIWSEINKLLEAK 216 + ++ + K+ LKI+S+E +NKLLE K Sbjct: 233 VKNNPNLIEKSPKERIRDELLKIISNENSKDTLNKLLENK 272 >gi|220904822|ref|YP_002480134.1| polynucleotide adenylyltransferase protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869121|gb|ACL49456.1| Polynucleotide adenylyltransferase region [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 354 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161 GR + D + D RD TINAL D G++ + L DLR + ++ A Sbjct: 42 GRECMPLRGGDIEEDLAARDLTINALALDNVGRLHMHPQALEDLRQQILRPASPAA--FA 99 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLKILSSERIWSE 208 D RI R RF A + ID + ++ A+ L L +ER+ E Sbjct: 100 ADPTRIFRLARFAAAWPGWRIDRSAFEQMRALSAQT-LAALPAERVGRE 147 >gi|156317793|ref|XP_001618045.1| hypothetical protein NEMVEDRAFT_v1g225564 [Nematostella vectensis] gi|156197131|gb|EDO25945.1| predicted protein [Nematostella vectensis] Length = 441 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 I+++ L + ++ +VGG VRD L+++ +D D+AT+ P++V F R Sbjct: 339 ISVVERLQQAGYQAYLVGGCVRDLLLDIEPKDFDVATSATPEQVRAEFRNAR 390 >gi|205356757|ref|ZP_03223517.1| putative RNA nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345396|gb|EDZ32039.1| putative RNA nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8421] Length = 310 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 34/199 (17%) Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA----LYA 129 +G + + K +D+ R++ I+ G +V D K + RRDFTIN+ L+ Sbjct: 8 GFGKSFFVYKFKNYDLALARTENKISYGHKGFEVQICNDEKLGAKRRDFTINSMMINLFN 67 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D+ +D+ GGL DL ++ I + ED LR+LR F + + K I S+ Sbjct: 68 DE---FLDFYGGLKDLGAGFLRHIDKQSFQ--EDSLRVLRAVVFASRFNFK-ITSE---- 117 Query: 190 SIKAKKGLKI--LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 S+K + + I LS +RI +E+ K K+P + + Y +QE+ L++ Sbjct: 118 SLKLMQSMDITDLSKDRINAELYKFF--KSPRLDVGYRY-----------LQELDLEK-- 162 Query: 248 QVIEAEQVFE-WKIDSLLR 265 Q+ E +F+ + +LLR Sbjct: 163 QIFGFESIFKSLEFQNLLR 181 >gi|260436514|ref|ZP_05790484.1| poly A polymerase family protein [Synechococcus sp. WH 8109] gi|260414388|gb|EEX07684.1| poly A polymerase family protein [Synechococcus sp. WH 8109] Length = 389 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 21/137 (15%) Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR- 85 + + +VGGAVRD L++ + D+ ++P + + ++ T + + I R Sbjct: 23 EGTALVGGAVRDGLLDRLQEQPDL-DLVVPSDAIALTKALAQELHGTCVVLDAERSIARL 81 Query: 86 ---KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--GKVIDYVG 140 DI D I D D RRD+ +NA+ Q G++ D G Sbjct: 82 VLGGWTVDIARQDGDRIED--------------DLWRRDYRLNAIAVSLQPWGELWDPTG 127 Query: 141 GLNDLRNRTIKFIGDAH 157 GL+DL+ + I +A+ Sbjct: 128 GLSDLQQGCLTAISEAN 144 >gi|148656960|ref|YP_001277165.1| polynucleotide adenylyltransferase region [Roseiflexus sp. RS-1] gi|148569070|gb|ABQ91215.1| Polynucleotide adenylyltransferase region [Roseiflexus sp. RS-1] Length = 874 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 31/247 (12%) Query: 10 FHDSDLINIL----SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 F D DL+ IL ++ + IVGGAVRD ++ + D+D+ + + Sbjct: 448 FLDRDLLAILRRAGAIAQQRGAALYIVGGAVRDMILQRTPDDLDLVVEGDAIGLAEALAA 507 Query: 66 TRYKVIPTSISYGTIKIICRKK------YFDITTLRSDLITDGRYAKVVFTRDWKADSL- 118 + + ++GT + ++ D R++ Y + D +A SL Sbjct: 508 ELNGTVRSHAAFGTATLTLAREEGQAPLTLDFVMARTEF-----YERPSALPDVEAASLR 562 Query: 119 ----RRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI--LEDYLRIL 168 RRDFTIN L + G + D+ GG D+ + I+ + H + ++D RIL Sbjct: 563 HDLHRRDFTINTLAICLNPTRYGWLYDFYGGRRDITRKLIRVL----HNLSFIDDPTRIL 618 Query: 169 RFFRFFAHYG-EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 R R A G + L+ + L + +RI E+ +L ++P A+ + + Sbjct: 619 RAARLAARLGFTIEPRTRALIGDALEQGVLGRATPQRIMHELRLILAEESPEPALALLDD 678 Query: 228 GGIFKEI 234 G+ + + Sbjct: 679 LGVLRAL 685 >gi|157412665|ref|YP_001483531.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9215] gi|157387240|gb|ABV49945.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus str. MIT 9215] Length = 415 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 15/188 (7%) Query: 28 KSCIVGGAVRDSLMN-------LSVQDIDI----ATTILPDRVMRIFSKTRYKVIPTSIS 76 K VGG +RD L++ DID+ ++ L + + + +I Sbjct: 34 KVAFVGGYLRDLLISKFHKKSFSKPVDIDLVIEGSSIALAKFIKKNIVNVDFCLIKEFNV 93 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKV 135 Y T++I DI + R ++ + V + D RRDFTIN++ + K+ Sbjct: 94 YNTVEININDYKIDIASARKEIYSAPGLNPTVTKSTIEEDLKRRDFTINSIAFEVSTRKI 153 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D GG++D++++ + + + I +D R++R + +A + NI ++ L S + K Sbjct: 154 YDLFGGISDIKSKRLNLL--HSNSISDDPSRLIRCAK-YASRLDFNISNNSLKQSQETVK 210 Query: 196 GLKILSSE 203 SSE Sbjct: 211 QWPWKSSE 218 >gi|187251052|ref|YP_001875534.1| tRNA nucleotidyltransferase/poly(A) polymerase [Elusimicrobium minutum Pei191] gi|186971212|gb|ACC98197.1| tRNA nucleotidyltransferase/poly(A) polymerase [Elusimicrobium minutum Pei191] Length = 374 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 20/201 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA----TTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 K +VGGAVRD + QD+DI + +L D +++ + +GT ++ Sbjct: 23 KVWLVGGAVRDFYLGRKTQDVDITVEGDSKVLIDFLIKFHGAEAQEF----DDFGTARVK 78 Query: 84 CRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI----DY 138 + D R ++ V D RRDFT NA G D Sbjct: 79 LKNGLKLDFVRARKEVYLKPAALPKVSPSTIDKDLFRRDFTANAWALSINGATFGVYYDP 138 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKK 195 + + IK + D ++D R R RF + EKN + L+ + Sbjct: 139 FKAKQSIDKKQIKVLHD--KSFIDDPTRAYRAVRFAGRFNWTIEKN--TKWLLKNASKAA 194 Query: 196 GLKILSSERIWSEINKLLEAK 216 +LS ER+ +E+ K+LE K Sbjct: 195 LPSLLSRERLRAELIKILEEK 215 >gi|56964308|ref|YP_176039.1| hypothetical protein ABC2543 [Bacillus clausii KSM-K16] gi|56910551|dbj|BAD65078.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 698 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 16/190 (8%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI----SYGTIKIICRK 86 +VGG VRD + +DID+ + D + F+K S+ S+GT + Sbjct: 335 LVGGLVRDFFLKRPHKDIDL--VVEGDGIA--FAKQLATAFGGSVRSHESFGT-ATWANE 389 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGL 142 + DI T R + V D RRDF+INA+ G V+D G Sbjct: 390 QDIDIVTCRKEFYLQKGALPTVRPASIYEDLARRDFSINAMAIQINRSSFGNVLDVFQGK 449 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 L ++ I+ + +ED R+ R RF ++ S+ + + K L +S+ Sbjct: 450 QALIDKHIRILHPL--SFIEDPTRLFRAVRFGLRL-NFSLSSETIHQATKTGAALHHISA 506 Query: 203 ERIWSEINKL 212 +R+ E++ L Sbjct: 507 KRLRQELDLL 516 >gi|152989945|ref|YP_001355667.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151421806|dbj|BAF69310.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 844 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 129/301 (42%), Gaps = 63/301 (20%) Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 K+ F KA +L +NA D G V++ V L+ L + + K A ++ + Sbjct: 124 GKIRFIMPVKAQNLCLQCHMNAKVGDVLG-VVEVVSNLDPLISSSTKEFSKA---LIVSF 179 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL----KILSSERIWSEINKLLEAK--NP 218 L L F G V + K +KGL K+ S +++K+ + K P Sbjct: 180 LLPLGIIFFI-----------GYVITRKLRKGLEEIKKVTQSISHMDDLDKIKQQKIDFP 228 Query: 219 LNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI----VLISWQD 274 L F EI+ D++E++ ++LS++ ++ E++I L +FI V+ W++ Sbjct: 229 LKE---------FDEIYADIKELA-NRLSKIAIDREILEFEIKLLEKFILTSEVVKDWKE 278 Query: 275 KKSIL--------SMAKKFSLPREIRYFLISFF-----NCNFNQKTLSI--PEIKKLFYL 319 S+L + FS+ +E + + F + QK I P+I + F L Sbjct: 279 YVSMLLIEINKVIPIYMMFSIFKETDRYEVEIFWIGNPSKKLKQKFEEIIKPKIAETFAL 338 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF---PLTGDDVVKYGIP 376 D+ ++ +H+N +T+QD C L DI + K L P G +V G+ Sbjct: 339 EKDE--------YIEMHHN-VTNQDMCIPDTALDDIEYKTKSLLLEKPQIG-GIVGIGVS 388 Query: 377 P 377 P Sbjct: 389 P 389 >gi|87301822|ref|ZP_01084656.1| poly A polymerase family protein [Synechococcus sp. WH 5701] gi|87283390|gb|EAQ75345.1| poly A polymerase family protein [Synechococcus sp. WH 5701] Length = 421 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 24/209 (11%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY---KVIPTSISYGTIKIICR 85 + +VGGAVRD L+ D+ + D + +R+ V+ +++ R Sbjct: 48 TALVGGAVRDGLLGRLGPQPDLDLVVPGDAITLCNRLSRHHGGSVVVLDAERSIARLVLR 107 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF--TINALYADQQGKVIDYVGGLN 143 D+ D D ++D RRDF AL +++D GGL Sbjct: 108 GWSLDLARQVGD--------------DLESDLWRRDFRLNALALPLLPGSELLDPTGGLE 153 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSS 202 DL + + + + +L+D LR+LR R A G + + G + + ++ Sbjct: 154 DLVRGELVAVREVN--LLDDPLRMLRGVRLAAELGFRLEPRTRGWIERHHGH--ISQVAP 209 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 ER+ E+ KL +A + + G+ Sbjct: 210 ERVLQELEKLAQAPGGGTGLEEALSCGLL 238 >gi|116625462|ref|YP_827618.1| polynucleotide adenylyltransferase region [Candidatus Solibacter usitatus Ellin6076] gi|116228624|gb|ABJ87333.1| Polynucleotide adenylyltransferase region [Candidatus Solibacter usitatus Ellin6076] Length = 437 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 44/214 (20%), Positives = 92/214 (42%), Gaps = 21/214 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMR-IFSKTRYKVIPTSISYGTIKIICRKKYF 89 + GGA+RD + ++D+D ++ + I KT ++ + + T +I+ + Sbjct: 36 LTGGAMRDMIAGFRIRDLDFVVEGNALKMAKAICEKTGATLVSSDENRKTAEIV----FP 91 Query: 90 DITTLRSDLITDGRYAKV-----VFTRDWKADSLRRDFTINA----LYADQQGKVIDYVG 140 T + + +YA+ V + D RDFT NA L +G ++D + Sbjct: 92 SGVTAQIGMSRQEKYARSGGKPQVTPATIQEDLRGRDFTANAIALSLNRASRGLLLDPMN 151 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKGL 197 GL D+ + ++ + + + +D R+LR RF G E+ VA+ + + Sbjct: 152 GLADIERKELRAV--STYGFYDDPTRLLRLVRFKVRLGFTIEERTQMQ--VANAREAEVE 207 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 K + ++ + E+ ++ NP + + G+ Sbjct: 208 KRIPAKALGEELKRISAEDNPTEILKGLEEAGLL 241 >gi|33860861|ref|NP_892422.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633803|emb|CAE18762.1| tRNA nucleotidyltransferase/poly(A) polymerase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 415 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 14/158 (8%) Query: 28 KSCIVGGAVRDSLMN-------LSVQDIDIAT----TILPDRVMRIFSKTRYKVIPTSIS 76 K IVGG +RD L+ + DIDI T L + + S +I Sbjct: 34 KVAIVGGYIRDLLITKIHKKTFFNPLDIDIVTEGSSVDLAKFIKKNISNVELCLIKEFEI 93 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKV 135 Y T+++ DI + R + +V + K D RRDF+INA+ + + ++ Sbjct: 94 YDTVELNINDLKIDIASARKEKYEAPGLNPIVKHANIKEDLKRRDFSINAIAFEFSKQEI 153 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ G+ ++ + + + + + I +D R++R R+ Sbjct: 154 YDFFDGIKHIQEKELHLLHE--NSIQDDPSRLIRCARY 189 >gi|156742435|ref|YP_001432564.1| polynucleotide adenylyltransferase region [Roseiflexus castenholzii DSM 13941] gi|156233763|gb|ABU58546.1| Polynucleotide adenylyltransferase region [Roseiflexus castenholzii DSM 13941] Length = 872 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 20/218 (9%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 IVGGAVRD ++ D+D+ + + + + ++GT + ++ + Sbjct: 473 IVGGAVRDMILERKPDDLDLVVEGDAIGLAEALATELGGAVRSHSAFGTATLTLKRLDGE 532 Query: 91 ITTLRSDLITDGRYAKVVFTRDWKADSL-----RRDFTINALY----ADQQGKVIDYVGG 141 TL + Y + D +A SL RRDFTIN L + G + D+ GG Sbjct: 533 PLTLDFVMARTEFYERPSALPDVEAASLRHDLHRRDFTINTLAICLNPTRYGWLYDFYGG 592 Query: 142 LNDLRNRTIKFIGDAHHRI--LEDYLRILRFFRFFAHYG---EKNIDSDGLVASIKAKKG 196 D+ + I+ + H + ++D RILR R A G E + L+ + Sbjct: 593 RRDMNRKLIRVL----HNLSFIDDPTRILRAARLAARLGFVIEPR--TRALIGDALEQGV 646 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 L + +RI E+ +L ++P A+ + + G+ + + Sbjct: 647 LGRATPQRIMHELRLILAEEHPEPALALLDDLGVLRAM 684 >gi|91069902|gb|ABE10831.1| tRNA nucleotidyltransferase [uncultured Prochlorococcus marinus clone ASNC2150] Length = 415 Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 4/128 (3%) Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL-YADQQGKV 135 Y T++I DI + R ++ + V + D RRDFTIN++ + K+ Sbjct: 94 YNTVEININDYKIDIASARKEIYSAPGLNPTVNKSTIEEDLKRRDFTINSIAFEVSTRKI 153 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D GG++D++++ + + + I +D R++R + +A + NI ++ L S + + Sbjct: 154 YDLYGGISDIKSKRLNLL--HSNSISDDPSRLIRCAK-YASRLDFNISNNSLKQSQETVR 210 Query: 196 GLKILSSE 203 SSE Sbjct: 211 QWPWKSSE 218 >gi|282856046|ref|ZP_06265333.1| multifunctional CCA protein [Pyramidobacter piscolens W5455] gi|282586128|gb|EFB91409.1| multifunctional CCA protein [Pyramidobacter piscolens W5455] Length = 414 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 16/248 (6%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG VRD L+ +D D L + + ++V + + + + Sbjct: 19 VVGGWVRDRLIGRPAEDRDYVVCGLDAATL----EREFQVRAVGRQFPVYLLEVGGRLSE 74 Query: 91 ITTLRSDLITDGRYA--KVVFTRDW--KADSLRRDFTINALYAD-QQGKVIDYVGGLNDL 145 + R++ T Y + F+ D + D RRD +N++ G++ID GG D+ Sbjct: 75 VALARTERKTGTGYRGFEARFSPDTTIEEDLYRRDTRMNSMAVRLPGGELIDPFGGRADI 134 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA-KKGLKILSSER 204 R I + H R +D +R LR R A G + G V + A ++ L + +ER Sbjct: 135 ERRVISATSE-HFR--DDPVRALRAARQAAQLGFSI--APGTVRLMSACREELALEPTER 189 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFEWKIDSL 263 +++E+ K L + P + + + GI +F ++ + ++Q ++ FE ++ L Sbjct: 190 VFAEMRKALASPRPELFFIALRDAGILDAVFPELTALDGVEQPAKYHRGLDAFEHSLEVL 249 Query: 264 LRFIVLIS 271 R L Sbjct: 250 RRTAALTP 257 >gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54] gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54] Length = 317 Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 6/88 (6%) Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCN----FNQKTLSIPEIKKLFYLY--GD 322 LI +D +SI M +K+S P+E+R ++ N + FN+ L+IP +KKL L G Sbjct: 23 LIVRRDSRSIQMMVEKYSTPQEVRRDALNHNNLSNIKLFNEILLAIPPVKKLAELMQQGG 82 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQ 350 ++A + I +L ++ + + F+L+ Sbjct: 83 VKILAGVFILSSLLFSAVAFLVSFFLLK 110 Searching..................................................done Results from round 2 >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040792|gb|ACT57588.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 416/416 (100%), Positives = 416/416 (100%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM Sbjct: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR Sbjct: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK Sbjct: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE Sbjct: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN Sbjct: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK Sbjct: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ Sbjct: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 >gi|315122580|ref|YP_004063069.1| poly(A) polymerase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495982|gb|ADR52581.1| poly(A) polymerase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 421 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 306/416 (73%), Positives = 364/416 (87%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 MVSI QHKWF D DLI+ILSLLN+G+DKSCIVGGAVR+SLMNLSVQDIDIATTILP+ +M Sbjct: 1 MVSIAQHKWFCDPDLIHILSLLNQGKDKSCIVGGAVRNSLMNLSVQDIDIATTILPEVIM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 +IFS+T YKVIPT ISYGT+ II KK FDITTLRSDLITDGR+AKVVFT DWKADSLRR Sbjct: 61 KIFSQTSYKVIPTGISYGTVTIIKNKKSFDITTLRSDLITDGRHAKVVFTHDWKADSLRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYADQ G+VIDYVGGLNDL+NRTIKFIG+AHHRILEDYLRILRFFRFFAHYG+ Sbjct: 121 DFTINALYADQAGRVIDYVGGLNDLKNRTIKFIGNAHHRILEDYLRILRFFRFFAHYGQH 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +ID DGL ASI+AK GLKILSSERIW EI K+LEAKNPL+AI++M+NGGIFKEIFL+VQ+ Sbjct: 181 DIDPDGLAASIQAKAGLKILSSERIWLEIKKILEAKNPLHAIMYMHNGGIFKEIFLNVQD 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 S+DQLSQVIE E+VF W+ID LLRFIVLI ++K+SI+S+AKK SLPREI+YFL++ Sbjct: 241 SSIDQLSQVIEGEKVFGWEIDPLLRFIVLIPLREKQSIISIAKKLSLPREIKYFLLACIG 300 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 N ++ +SI E+K+ FYLYG ++++ KLKIFL+L+Y NL ++ C I Q++ DI HW K Sbjct: 301 FNIEREKISIQEMKRFFYLYGREIVVIKLKIFLSLNYKNLDREEICHIRQIILDIEHWIK 360 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PLFPL GDDV+KYGIPPGKK+GNIL +C++EWI SSF+LS EDL HLL+K+I S+ Sbjct: 361 PLFPLRGDDVLKYGIPPGKKIGNILSYCEKEWIKSSFKLSYEDLLHLLQKVIKFSR 416 >gi|121601737|ref|YP_989284.1| tRNA-nucleotidyltransferase [Bartonella bacilliformis KC583] gi|120613914|gb|ABM44515.1| tRNA-nucleotidyltransferase [Bartonella bacilliformis KC583] Length = 417 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 156/406 (38%), Positives = 236/406 (58%), Gaps = 6/406 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W ++ +L +L+ G++++ +VGGAVR+ L+ + DIDIATT LP +V++ + Sbjct: 9 QADWLQHKNIQTLLRILSLGDEEARVVGGAVRNQLLGQPISDIDIATTCLPQQVIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT I +GT+ ++ +++TTLRSD+ TDGRYAKV F RDWK D+ RRDFTIN Sbjct: 69 AGFKAVPTGIDFGTVTVVSESCSYEVTTLRSDVETDGRYAKVAFGRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D G++ D VGGL+D+ +RTI+FIG A RI EDYLRILRFFRFFA YG D+ Sbjct: 129 ALYCDATGQLYDLVGGLSDIASRTIRFIGVAEQRICEDYLRILRFFRFFAWYGAGRPDAQ 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL LSSER+W EI KLL A +P A++ M GI IF + ++ +D Sbjct: 189 GLKACVALKHGLHKLSSERVWEEIKKLLAASDPTRALLWMRQSGILTLIFPETEKWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +++ E V WK D LLR L+ D + + +A++ + + L + Sbjct: 249 IHSLVKTEHVLGWKEDPLLRLQSLLP-PDSERLQDIARRLRFSNKEKTRLREWAELESIS 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-----NLTHQDTCFILQVLSDIIHWKK 360 + S ++KL Y +G + ++ L + LA N Q +++ W+ Sbjct: 308 QNCSETCLQKLIYFHGRQPILDHLSLSLAAVCAGPVEGNENSQKIEHYMRLYQLAQRWEI 367 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 P+FP++G D+++ G GK VG L + W+ S F + + +L Sbjct: 368 PVFPVSGKDLIERGFAKGKIVGQKLKELETIWVESGFLIDRNELLE 413 >gi|110634525|ref|YP_674733.1| polynucleotide adenylyltransferase region [Mesorhizobium sp. BNC1] gi|110285509|gb|ABG63568.1| Polynucleotide adenylyltransferase region [Chelativorans sp. BNC1] Length = 409 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 164/410 (40%), Positives = 244/410 (59%), Gaps = 6/410 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +I W L +L +LN+G +++ I GGAVR++L+ +V DIDIATT LPD + Sbjct: 1 MTTIAGAPWLDQQGLQPLLEILNEGGEEARIAGGAVRNALLGEAVTDIDIATTNLPDETI 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R +KV+PT +GTI +I + +++TTLR+D+ T GR+A+VVF RDWKAD+ RR Sbjct: 61 RRAKAAGFKVVPTGYEHGTITVIAKGTPYEVTTLRADVETFGRHARVVFGRDWKADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYA+ G+V+D VGGL DL++RT++FIG+ RI EDYLRILRFFRFFA YG Sbjct: 121 DFTINALYAEPGGRVVDLVGGLADLQSRTLRFIGEPEKRIREDYLRILRFFRFFAWYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A + K L LS ERIW E+ KLL A +P A++ M G+ ++ + ++ Sbjct: 181 RPDAEGLKACARLKDRLSGLSVERIWMELKKLLAAPDPSRALLWMRQTGVLTQVLPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + ++E E+ W ++ LLR ++ D + I +A + L + L+S+ Sbjct: 241 WGIDAIHSLVETERALGWPVEPLLRLASIVP-PDPERIEKLAARLRLSKAEGAALVSWAE 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDI 355 + +L E KL Y M +L++ LA D I ++L Sbjct: 300 SSQPDPSLKEGEFLKLLYRSEAGGMAWRLRLGLASARARAVESDKALIEAAGYQRLLDIT 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 W+KP+FP+ G D+++ G PGK++G L +++WI S F LS+EDL Sbjct: 360 ARWEKPVFPVRGRDLLERGFKPGKELGAKLAELEEKWIASGFSLSREDLL 409 >gi|222149362|ref|YP_002550319.1| poly(A) polymerase [Agrobacterium vitis S4] gi|221736346|gb|ACM37309.1| poly(A) polymerase [Agrobacterium vitis S4] Length = 420 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 156/420 (37%), Positives = 239/420 (56%), Gaps = 6/420 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M ++ WF D+ L + +LLN + +VGGAVR+SL+ V DID+ATT++P V Sbjct: 1 MTTVADQPWFQDAALAKVFALLNADGGEVRVVGGAVRNSLLGEPVGDIDLATTLVPSEVT 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GT+ ++ K F++TTLR D+ T+GR+A+V F DW+ D+ RR Sbjct: 61 ARAEAAGIKAVPTGIEHGTVTLVIGGKPFEVTTLRRDVETNGRHAEVAFGTDWQVDAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYA G+VID VGGL DL T++FIGDA RI EDYLR+LRFFRFFA YG Sbjct: 121 DFTINALYATASGEVIDPVGGLADLETGTLRFIGDARLRIAEDYLRVLRFFRFFAWYGRG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL A A+ L LS+ER+WSE KLL AK+P A++ M G+ I + ++ Sbjct: 181 RPDADGLRACAAARDELHRLSAERVWSETKKLLSAKDPGRALLWMRQSGVLTAILPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I E W+ + LLR + ++ D + + +A++ L R FL F Sbjct: 241 WGIDAIPGLIATETALNWQREPLLRLVAMVPN-DPERMKGLAERLKLSRAEAEFLQRFAT 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 + ++ + +L Y + ++A+LK+ LA + ++L Sbjct: 300 APKIKDDMADLALDRLLYRHDKPGIVAQLKLSLASARAKAEGDTASMAASARWFRLLQRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 ++KP+FP+TG D + G+ PG ++G +L + W+ ++F S+E L L++ + S Sbjct: 360 QAFEKPVFPITGSDAIAAGLAPGPEIGRVLSTLEDSWVQANFTFSREKLLSRLKEAVTPS 419 >gi|319408915|emb|CBI82572.1| poly(A) polymerase [Bartonella schoenbuchensis R1] Length = 418 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 158/408 (38%), Positives = 238/408 (58%), Gaps = 6/408 (1%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 W S + +L +L+ +++ IVGGAVR+ L+N + DIDIATT LP +V++ K Sbjct: 11 DWLQHSHIQTLLRILSLDGEEARIVGGAVRNQLLNQPISDIDIATTCLPQQVIKRVEKEG 70 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 +K IPT + +GT+ ++ +++TTLRSD+ TDGRYAKV F RDWK D+ RRDFTINAL Sbjct: 71 FKAIPTGVDFGTVTVVIESCCYEVTTLRSDIETDGRYAKVAFCRDWKKDAQRRDFTINAL 130 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 Y D G++ D VGGLND+ ++TI+FIG A RI EDYLRILRFFRFFA YG D+ GL Sbjct: 131 YCDASGQLYDEVGGLNDIESKTIRFIGVAKDRICEDYLRILRFFRFFAWYGGGRPDAQGL 190 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A I K+GL LS ER+W E+ KLL A +P ++ M GI I + ++ +D + Sbjct: 191 KACISLKQGLHKLSPERVWGEMKKLLTASDPTRTLLWMRQSGILTLILPETEKWGIDAIH 250 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 +++ E++ WK D LLR L+ D + MA + L E + L + + Sbjct: 251 PLVKIERILGWKADPLLRLESLLP-PDPVRLHDMAHRLRLSNEEKKRLKEWAKLGIINPS 309 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD-----TCFILQVLSDIIHWKKPL 362 S +K+L Y +G + ++ +L + LA + +D T + LQ+ W+ P Sbjct: 310 CSDVCVKELIYFHGRQPVLDQLSLSLASICTGILDEDEILEKTEYYLQLYHLAQQWQIPT 369 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D++K G+ G +G L ++ W+ S F + + +L + + Sbjct: 370 FPISGRDLMKKGLTQGALLGQKLKELEKIWVKSGFLMDRNELLEKIEQ 417 >gi|222086618|ref|YP_002545152.1| poly(A) polymerase protein [Agrobacterium radiobacter K84] gi|221724066|gb|ACM27222.1| poly(A) polymerase protein [Agrobacterium radiobacter K84] Length = 418 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 172/419 (41%), Positives = 247/419 (58%), Gaps = 6/419 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ WF D L +LSLLN D+ +VGGAVR+SL+ L V DIDIATT+LP+ V+ Sbjct: 1 MTSVAGQTWFKDEALQRVLSLLNAEGDEGRVVGGAVRNSLLGLPVADIDIATTLLPEAVI 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT I++GT+ ++ K F+ITTLR D+ TDGR A+V F+ DW+AD+ RR Sbjct: 61 ERATTAGIKAVPTGIAHGTVTLVIDGKPFEITTLRRDVETDGRRAQVAFSNDWQADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYA G+VID VGGL DL R I+FIGDA RI ED+LRILRFFRFFA+YG Sbjct: 121 DLTINALYASDNGEVIDMVGGLADLERRNIRFIGDAATRIAEDHLRILRFFRFFAYYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL A A+ + LS+ER+WSE+ KLL AK+P A++ M GI E+ + ++ Sbjct: 181 RPDADGLRACAAARSKIASLSAERVWSEMKKLLAAKDPGRALLWMRQVGILTEVLPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I EQ W D LLR ++ D + +A++ L + +L + N Sbjct: 241 WGIDAIPALIATEQALGWTSDPLLRLAAIVP-PDAARLAKLAERLRLSKAEAAYLQGWAN 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 + +S +L Y Y + A+LK+ LA+ T + ++L Sbjct: 300 APGIKDDMSEVVFDRLLYRYDTPGVAARLKLALAVARGKAEGDFEEMARTARLGKLLERT 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 WKKP FP++G D + G+ G +VG IL +Q+W++ +F + + L L++LI S Sbjct: 360 AGWKKPAFPVSGADALAAGVSAGPRVGEILGKLEQQWLDGNFAMDRAALLARLKELIES 418 >gi|319898483|ref|YP_004158576.1| poly(A) polymerase [Bartonella clarridgeiae 73] gi|319402447|emb|CBI75988.1| poly(A) polymerase [Bartonella clarridgeiae 73] Length = 417 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 157/411 (38%), Positives = 240/411 (58%), Gaps = 8/411 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q +W S++ +L +L++ +++ +VGGAVR+ L+ + DIDIATT LP +V++ + Sbjct: 9 QVRWLQCSNIQTLLRVLSQDGEEARVVGGAVRNQLLQQPISDIDIATTCLPQQVIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ +++TTLRSD+ TDGR+AKV+F+RDWK D+ RRDFTIN Sbjct: 69 VGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIETDGRHAKVIFSRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY + GK+ D VGG+ND+ RTI+FIG + RI EDYLRILRFFRFFA YG+ D++ Sbjct: 129 ALYCNAAGKIYDEVGGMNDIATRTIRFIGVSEQRICEDYLRILRFFRFFAWYGKGRPDAE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A ++ K GL+ LS ERIW E+ KLL A +P A++ M GI I + + +D Sbjct: 189 GLKACVRLKHGLQKLSPERIWEEMKKLLAASDPTRALLWMRQSGILTLILPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I+ EQ F WK+D LR LI MA + L + + L + Sbjct: 249 IHSLIKTEQAFGWKVDPFLRLESLIPPH-IVRFHDMAGRLRLSNKEKIRLKQWSELELIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFL------ALHYNNLTHQDTCFILQVLSDIIHWK 359 S ++KL Y YG ++ +L + L AL + ++ C+I + W+ Sbjct: 308 HNCSDTFVQKLIYFYGRPPVLDQLALSLAAARDQALKDSKAAQKEECYIR-LYQLAQKWQ 366 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P FP++G D+++ G+ G +G L + WI S F + + L + + Sbjct: 367 IPTFPISGKDLLERGLVKGMFLGKKLKELETMWIESGFLIDRNKLLEKIEQ 417 >gi|163867932|ref|YP_001609136.1| poly(A) polymerase [Bartonella tribocorum CIP 105476] gi|161017583|emb|CAK01141.1| poly(A) polymerase [Bartonella tribocorum CIP 105476] Length = 417 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 155/409 (37%), Positives = 236/409 (57%), Gaps = 6/409 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W SD+ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP +++ + Sbjct: 9 QVAWLQKSDIQTLLRVLSLEGEEARIVGGAVRNQLLGQPISDIDIATTCLPQQIITRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GTI ++ +++TTLRSD+ TDGR+AKV F RDWK D+ RRDFTIN Sbjct: 69 AGFKAIPTGIAFGTITVVAHSCAYEVTTLRSDIETDGRHAKVAFGRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D G + D VGGL+D+ ++T++FIG A +RI EDYLRILRFFRFFA YG D + Sbjct: 129 ALYCDAAGNLYDDVGGLSDIESQTVRFIGVAENRISEDYLRILRFFRFFAWYGVGRPDGE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A ++ K GL+ LSSERIW+E+ KLL A +P A++ M I IF + ++ +D Sbjct: 189 GLKACVRLKDGLQKLSSERIWAEMKKLLLASDPTRALLWMRQSRILSLIFPETEKWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++E EQ WK+D LR L+ D + MA++ + L + Sbjct: 249 IHALVETEQTLGWKVDPFLRLESLLP-PDPIRLHKMAQRLRFSHKETTRLKEWAELEIIS 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY-----NNLTHQDTCFILQVLSDIIHWKK 360 + S ++KL Y +G + ++ +L + +A + Q T L++ + W+ Sbjct: 308 QNCSDHFVQKLIYFHGRQPVLDQLSLSIAASHVDTLEKGDALQKTEDYLKLYQLVQKWQI 367 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P FP+ G+D++K G G +G L + W+ S F + + L + Sbjct: 368 PTFPINGNDLIKKGFSKGILLGKKLKELEMIWVESGFLMDRHALLEKID 416 >gi|319405251|emb|CBI78856.1| poly(A) polymerase [Bartonella sp. AR 15-3] Length = 417 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 158/411 (38%), Positives = 241/411 (58%), Gaps = 8/411 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W S++ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP ++++ + Sbjct: 9 QVAWLQSSNIQTLLRVLSLDGEEARIVGGAVRNQLLQQPISDIDIATTCLPQQIIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ +++TTLRSD+ TDGR+AKV+F+RDWK D+ RRDFTIN Sbjct: 69 VGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIETDGRHAKVIFSRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY + G+V D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++ Sbjct: 129 ALYCNAAGEVYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL+ LS ER+W E+ KLL A +P A++ M GI I + + +D Sbjct: 189 GLKACTRLKHGLQKLSPERVWGEMKKLLTALDPTRALLWMRQSGILTLILPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I+ EQ F WKID LR LI D + MA++ L + + L + Sbjct: 249 IHSLIKTEQAFGWKIDPFLRLESLIP-PDVMRLHDMARRLCLSNKEKIRLKEWAELELIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNNLTHQDTCFILQVLSDIIHWK 359 S +++L Y YG + ++ +L + LA L + + ++ C+I + W+ Sbjct: 308 HDCSDIFMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKVVQKEECYIR-LYQLAREWQ 366 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P FP++G D+++ G+ G +G L + WI S F + + L + + Sbjct: 367 IPTFPISGKDLLERGLVKGMFLGKKLKELETLWIESGFLIDRNKLLEKIEQ 417 >gi|241205753|ref|YP_002976849.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859643|gb|ACS57310.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 417 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 160/415 (38%), Positives = 233/415 (56%), Gaps = 6/415 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M I WF D L IL+LLN + +VGGAVR+SLM L V D+DIATT+ P+ VM Sbjct: 1 MTGIADQAWFRDPALGRILALLNADGGEGRVVGGAVRNSLMGLPVNDVDIATTLRPEPVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKV F+ DWK D+ RR Sbjct: 61 ERAAAAGIKAVPTGLEHGTVTLVIDGKPFEVTTLRTDVETDGRHAKVAFSTDWKGDAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYAD +G+V+D VGGL D+ I+FIGDA RI ED+LRILRFFRFFA+YG Sbjct: 121 DLTINALYADAKGEVVDLVGGLADIETHNIRFIGDAARRIAEDHLRILRFFRFFAYYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A A+ L LS+ER+WSE+ KLL A +P A++ M + EI + + Sbjct: 181 RPDAEGLKACSLARSKLTTLSAERVWSELRKLLGADDPGRALLWMRQVAVLTEILPESER 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I E+ W D LLR ++ D + ++A + L L ++ Sbjct: 241 WGIDAIPSLIATEKALGWTPDPLLRLAAIVP-PDAARMEALAARLKLSNAEAATLKAWAM 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 +S ++L Y + +LK+ LA+ + + ++L Sbjct: 300 AAPVNDDMSSAAFERLLYRNSTDGITTRLKLALAVARGKAESDFDEMARSARLNKLLDKA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 HWKKP FPL G DV+ GI G +VG +L + +W+ +F + L L++ Sbjct: 360 THWKKPQFPLNGGDVISAGIASGPRVGELLAGLENQWVEENFVTDRAALLARLQE 414 >gi|116253238|ref|YP_769076.1| poly(A) polymerase [Rhizobium leguminosarum bv. viciae 3841] gi|115257886|emb|CAK08984.1| putative poly(A) polymerase [Rhizobium leguminosarum bv. viciae 3841] Length = 417 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 163/415 (39%), Positives = 235/415 (56%), Gaps = 6/415 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M I WF D L IL+LL+ + +VGGAVR+SLM L V DIDIATT+ P+ VM Sbjct: 1 MTGIADQAWFRDPALGRILALLSADGGEGRVVGGAVRNSLMGLPVNDIDIATTLRPETVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT + +GT+ ++ K F++TTLR+D+ TDGR AKV F+ DWKAD+ RR Sbjct: 61 ERAEAAGIKAVPTGLDHGTVTLVIDGKPFEVTTLRTDVETDGRRAKVAFSTDWKADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYAD G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA+YG Sbjct: 121 DLTINALYADAGGEVVDLVGGLADIERRNIRFIGDAAMRIAEDHLRILRFFRFFAYYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A A+ L LS+ER+WSE+ KLL A +P A++ M + EI + + Sbjct: 181 RPDAEGLKACSAARSKLTSLSAERVWSELRKLLGAADPGRALLWMRQVAVLTEILPETER 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I E+ W D LLR ++ D + ++A + L L ++ Sbjct: 241 WGIDAIPSLITTEKALGWSPDPLLRLAAIVP-PDVARLEALAARLKLSNAEAATLKAWAM 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 +S ++L Y G + +LK+ LA+ + ++++L Sbjct: 300 AAPVNDDMSSAAFERLLYRNGAGGITTRLKLALAVARGKAESDFDEMARSARLIKLLDRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +HWKKP FPL G DV+ GI G +VG +L + +W+ +F + L L++ Sbjct: 360 MHWKKPQFPLNGGDVISAGIASGPRVGELLAGLENQWVEENFVSDRAALLARLQE 414 >gi|49475914|ref|YP_033955.1| Poly(a) polymerase [Bartonella henselae str. Houston-1] gi|49238722|emb|CAF27976.1| Poly(a) polymerase [Bartonella henselae str. Houston-1] Length = 417 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 155/406 (38%), Positives = 234/406 (57%), Gaps = 6/406 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W S + +L +L+ +++ IVGGAVR+ L+ + D+DIATT LP +++ + Sbjct: 9 QVDWLQHSHIQKLLHVLSLDGEEARIVGGAVRNQLLEQPISDVDIATTCLPQQIIVRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ + +++TTLRSD+ TDGR+AKV F RDW+ D+ RRDFT+N Sbjct: 69 AGFKAIPTGIAFGTVTVVSQSCSYEVTTLRSDIETDGRHAKVAFGRDWQKDAERRDFTMN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D G + D VGGL+D+ +RT++FIG A RI EDYLRILRFFRFFA YG D Sbjct: 129 ALYCDAAGNLYDAVGGLDDIASRTVRFIGIAEKRIREDYLRILRFFRFFAWYGAGRPDVQ 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL+ LSSERIW E+ KLL A NP+ A++ M GI IF + ++ +D Sbjct: 189 GLKACVCLKHGLQKLSSERIWGEMKKLLTAPNPIRALLWMRQSGILTLIFPETEKWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +++ EQ WK+D LLR L+ D + MA + L + + L + Sbjct: 249 IHSLVKTEQDLGWKVDPLLRLESLLP-PDPVRLYEMAHRLPLSHKEKTRLKEWAELEIIC 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY-----NNLTHQDTCFILQVLSDIIHWKK 360 + S ++KL Y +G + ++ +L + LA + N Q +++ W+ Sbjct: 308 QNCSDHFLQKLIYFHGRQPVLDQLSLSLAAAHVDVLKGNEALQKVEDYMRLYQFAQKWQI 367 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 P FP++G D++K G G +G L + WI S F + + L Sbjct: 368 PTFPISGKDLMKKGFSKGVLLGQKLKELETLWIESGFLIDRNSLLE 413 >gi|325293611|ref|YP_004279475.1| tRNA nucleotidyltransferase [Agrobacterium sp. H13-3] gi|325061464|gb|ADY65155.1| tRNA nucleotidyltransferase [Agrobacterium sp. H13-3] Length = 418 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 157/417 (37%), Positives = 244/417 (58%), Gaps = 6/417 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ WF L I +LLN + IVGGAVR++LM V D+D+ATT+ PD V+ Sbjct: 1 MSSLAGRDWFEKPALKRIFALLNADGGEVRIVGGAVRNALMEQPVVDVDMATTLTPDVVV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GT+ ++ + F++TTLR D+ T+GR+A+V F DW+ D+ RR Sbjct: 61 ERAKAAGIKAVPTGIEHGTVTLVIDGEGFEVTTLRRDVETNGRHAQVAFGTDWQIDAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYAD++G++ID + GL D+ T++FIGDA RI EDYLRILRFFRFFAHYG Sbjct: 121 DLTINALYADEKGEIIDLIDGLPDIETGTVRFIGDAAMRISEDYLRILRFFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL AS +AK L LS+ER+WSE+ KLL A++P A++ M G+ EI + ++ Sbjct: 181 RPDADGLRASARAKDRLGTLSAERVWSELKKLLSARDPSRALLWMRQSGVLAEILPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + ++ EQ W +D +LR ++ D++ + ++A + L + +L + + Sbjct: 241 WGIDAIHGLVATEQALGWTVDPMLRLAAIVP-PDRERLTALAGRLRLSKAEAAYLAHWAS 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 + + +L Y G + +LK+ LA +L+ Q + +L+ Sbjct: 300 APVIDPEMKETALDRLLYRQGVDGVKTRLKLALASARADLSGGEAAMQKVARLSTLLTRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + KP FPL+G DV+ G+ G KVG +L +++WI+ +F L + L L+ ++ Sbjct: 360 NKFHKPGFPLSGADVMAAGVESGPKVGEVLKSLEEKWIDVNFSLDRAALTARLKDML 416 >gi|227822872|ref|YP_002826844.1| polyA polymerase family protein [Sinorhizobium fredii NGR234] gi|227341873|gb|ACP26091.1| polyA polymerase family protein [Sinorhizobium fredii NGR234] Length = 419 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 162/414 (39%), Positives = 242/414 (58%), Gaps = 6/414 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M SI WF L + LLN + +VGGAVR+SL+ L D+D+ATT P+ V+ Sbjct: 1 MTSIAAEPWFQAPSLGRVFELLNADGGEVRVVGGAVRNSLLGLPAGDVDLATTWRPEDVV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 KV+PT I +GT+ ++ +++TTLR D+ TDGR A+V F DWKAD+ RR Sbjct: 61 ERAKSAGIKVVPTGIDHGTVTLVIGGIPYEVTTLRRDVATDGRRAEVAFGTDWKADAGRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYAD G++ DYVGGL D+ +RT++FIG A R+ EDYLRILR+FRFFAHYG Sbjct: 121 DFTINALYADANGEIFDYVGGLPDIESRTLRFIGSAAERVAEDYLRILRYFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A +A+ L LS+ER+W E+ KLL A++P A++ M G+ E+ + ++ Sbjct: 181 RPDAEGLRACAQARAKLATLSAERVWGEMKKLLAAEDPGRALLWMRQAGVLGEVLPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I AE++F W + LLR ++ D + + MA + L + FL+ F Sbjct: 241 WGIDAIPGLIAAEKIFFWVPEPLLRLAAIVP-PDAERLERMAARLRLSKAEAAFLVRFAE 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 TL+ + + Y G + ++A+LK+ LA +T ++LS Sbjct: 300 APAIAATLADAALDRELYRKGAEGIVARLKLSLASARRKSETDPAYLAETAAFQRLLSRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 W++P+FPL+G DV+K G+P G KVG +L + WI+ +F + + L L Sbjct: 360 ERWQRPVFPLSGADVLKAGVPAGPKVGELLTELENFWIDRNFSIDRATLVARLE 413 >gi|15966115|ref|NP_386468.1| hypothetical protein SMc02700 [Sinorhizobium meliloti 1021] gi|307305670|ref|ZP_07585417.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti BL225C] gi|307317673|ref|ZP_07597112.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti AK83] gi|15075385|emb|CAC46941.1| tRNA-nucleotidyltransferase/poly(A) polymerase [Sinorhizobium meliloti 1021] gi|306896831|gb|EFN27578.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti AK83] gi|306902373|gb|EFN32969.1| Polynucleotide adenylyltransferase region [Sinorhizobium meliloti BL225C] Length = 419 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 163/419 (38%), Positives = 241/419 (57%), Gaps = 6/419 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M SIV +WF L I LLN + +VGGA+R+SLM L D+D+ATT P+ V Sbjct: 1 MTSIVAERWFQAPHLRRIFDLLNADGGEVRVVGGAIRNSLMGLPAGDVDLATTWRPEEVT 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GT+ ++ ++ITTLR D+ TDGR A+V F DWKAD+ RR Sbjct: 61 ERAGGAGIKAVPTGIDHGTVTLVIEGVPYEITTLRRDVATDGRRAEVAFGTDWKADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYA G++ID+VGGL D+ RT++FIG A R+ EDYLRILRFFRFFAHYG Sbjct: 121 DFTINALYAGVDGEIIDHVGGLGDIETRTVRFIGSAAERVAEDYLRILRFFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A +A+ L LS+ER+W+E KLL A +P A++ M G+ EI + ++ Sbjct: 181 RPDAEGLRACAQARAKLATLSAERVWTETKKLLSADDPGRALLWMRQAGVLSEILPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I AE+ F W+ D LLR ++ D + +M K+ L + +L F Sbjct: 241 WGIDAIPALIAAEKSFSWRADPLLRLAAIVP-PDAARLEAMTKRLRLSKAESAYLDRFAE 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDI 355 TL+ +++ Y +G + ++ +L++ LA D+ ++L+ Sbjct: 300 APEIAATLADAALERQLYRHGTEGIVVRLRLALASARRKAETDPAFLADSASFHRLLARA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 W++P+FPL G DV+K GIP G KVG +L + W+ +F + + L L ++ S Sbjct: 360 EKWQRPVFPLNGADVLKLGIPAGPKVGEVLAELEAFWVERNFSVERATLVARLESMVRS 418 >gi|163761621|ref|ZP_02168692.1| poly(A) polymerase [Hoeflea phototrophica DFL-43] gi|162281217|gb|EDQ31517.1| poly(A) polymerase [Hoeflea phototrophica DFL-43] Length = 426 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 137/408 (33%), Positives = 239/408 (58%), Gaps = 6/408 (1%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ WF + L I ++ N+ ++ +VGGAVR++LM L V D+D+ATT P++V+ Sbjct: 16 SVAGEDWFANPALGRIFAVFNQDGEEIRVVGGAVRNALMGLPVSDVDLATTWAPEQVVAR 75 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +PT I +GT+ ++ + F+ITTLR D TDGR AKV F +DW+ D+ RRDF Sbjct: 76 AEAEGIRAVPTGIDHGTVTLVIDGQGFEITTLRHDAETDGRRAKVNFGQDWQVDAERRDF 135 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TINALYA+Q+G++ID +GGL D+ +RT++FIG A R+ EDYLR+LR+FRF+A YG Sbjct: 136 TINALYANQKGEIIDLIGGLEDIESRTVRFIGAADARVAEDYLRVLRYFRFYAGYGSGRP 195 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D+ L A +A+ L LS+ERIW E+ L A++P A++ M G+ + + ++ Sbjct: 196 DAAALKACTRARDRLSSLSAERIWKELKLLFAARDPGRALLWMRQTGVLTAVLPETEKWG 255 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 +D ++ +I E +W +D +LR + ++ D + + ++A + + R L ++ Sbjct: 256 IDSVAGLIATETALDWDVDPMLRLMAIVP-PDGERMKALAAQLKMSRAEAERLSAWAAAP 314 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY-----NNLTHQDTCFILQVLSDIIH 357 + T +I + +L Y +G + + ++++ + + + + L+ Sbjct: 315 VVKPTAAITVLDRLLYRHGVEPLCDRIRLSIVSARTRVETDTAAMTEAAGFTRHLAHASG 374 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 W +P+FP++G D++ G+ PG ++G L + W++S+F LS++ L Sbjct: 375 WTRPVFPVSGADLIAMGVEPGPEMGARLNALEDRWVDSNFALSKDALL 422 >gi|240850137|ref|YP_002971530.1| tRNA nucleotidyltransferase [Bartonella grahamii as4aup] gi|240267260|gb|ACS50848.1| tRNA nucleotidyltransferase [Bartonella grahamii as4aup] Length = 418 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 158/411 (38%), Positives = 233/411 (56%), Gaps = 6/411 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W D+ +L +L+ +++ IVGGAVR+ L+ + DIDIATT LP +V+ + Sbjct: 9 QVAWLQQKDIQTLLRVLSLEGEEARIVGGAVRNQLLGQPISDIDIATTCLPQQVIARVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GTI ++ +++TTLR D+ TDGR+AKV F RDWK D+ RRDFTIN Sbjct: 69 AGFKAIPTGIAFGTITVVAHSCSYEVTTLRCDIETDGRHAKVAFGRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY D G + D VGGL+D+ +RT++FIG A RI EDYLRILRFFRFFA YG D Sbjct: 129 ALYCDAAGNLYDDVGGLSDIASRTVRFIGIAEDRICEDYLRILRFFRFFAWYGAGRPDVQ 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GLK LSSERIW+E+ KLL A +P A++ M I IF + + +D Sbjct: 189 GLKACVSLKHGLKKLSSERIWAEMKKLLAAFDPTRALLWMRQSRILALIFPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +++ EQ WK+D LLR L+ D + MA++ + L + Sbjct: 249 IHALVKTEQALGWKVDPLLRLESLLP-PDPIRLHEMAQRLHFSHKETTRLKEWAELEIIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLAL-HYNNLTHQD----TCFILQVLSDIIHWKK 360 + S ++KL Y +G + ++ +L + +A H +NL D +++ W+ Sbjct: 308 QNCSDHFVQKLIYFHGRQPVLDQLSLSVAASHLDNLEKSDALQKAEDYVKLYQLAKKWQI 367 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P FP+ G+D++K G G +G L + W+ S F + + L + L Sbjct: 368 PTFPINGNDLIKKGFAKGVLLGKKLKELEMIWVESGFLMDRHALLEKIELL 418 >gi|114707044|ref|ZP_01439943.1| probable poly(A) polymerase [Fulvimarina pelagi HTCC2506] gi|114537594|gb|EAU40719.1| probable poly(A) polymerase [Fulvimarina pelagi HTCC2506] Length = 415 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 160/406 (39%), Positives = 235/406 (57%), Gaps = 2/406 (0%) Query: 1 MVSI-VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 M + ++ W D L ++L++LN+GE+++ IVGG VR++L+ V DIDIATT LPD Sbjct: 1 MTATRIEEDWLRDPLLQSVLAVLNEGEEEARIVGGPVRNTLLGQPVSDIDIATTCLPDEA 60 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 R + +KV+PT I +GTI +I + F++TTLR DL TDGR+A+V F RDW+AD+ R Sbjct: 61 SRRIESSGFKVVPTGIEHGTITVIANGRPFEVTTLREDLSTDGRHAEVKFGRDWEADAWR 120 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RDFTINALYA G+++D VGGL D+ R ++FIGDA RI EDYLRILRF+RFFA YG Sbjct: 121 RDFTINALYAKADGEIVDPVGGLADIEGRVLRFIGDAEARIKEDYLRILRFYRFFAWYGR 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D+ G+ AS K K GL LS+ERIW E+ KLL A +P A++ M G+ + + + Sbjct: 181 GRPDAAGIRASAKLKAGLAHLSAERIWMELKKLLGAPDPSRALLWMRQAGVLTAVLPESE 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 +D + +I+ E F W D LLR + +I D I +A + L ++ R L+++ Sbjct: 241 RWGIDNIHPLIDTETQFGWSADPLLRLLAIIP-PDAARIGELAGRLKLSKKERDRLLAYA 299 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + S ++ Y + +LK+ L L Q + + L+ + Sbjct: 300 DAENPSAEESDGALRARLYFGDPTAIADRLKLALTLARQKEDLQVSSRLTAQLAVASGFA 359 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 P FPL G+D++ G PG +G + K+ W F +S+E L Sbjct: 360 PPDFPLNGEDMLAAGYSPGPDLGKAMQRMKRLWAEGGFVMSREVLL 405 >gi|306843101|ref|ZP_07475723.1| polyA polymerase family protein [Brucella sp. BO2] gi|306286706|gb|EFM58259.1| polyA polymerase family protein [Brucella sp. BO2] Length = 423 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 150/410 (36%), Positives = 232/410 (56%), Gaps = 6/410 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W + L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ Sbjct: 10 KADWLNAKPLQALFKALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN Sbjct: 70 AGFKPVPTGMEHGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++ Sbjct: 130 ALYVTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++ + W+ D LLR L+ D + + K+ + R L ++ + + Sbjct: 250 IHGLVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVK 308 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 LS +KK Y + ++ ++++ A D I ++L H+ Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDA 368 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P+FP+TG D++ GI G +G L + WI+S F L + L L + Sbjct: 369 PVFPVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSLDRSALLDKLDR 418 >gi|306844552|ref|ZP_07477141.1| polyA polymerase family protein [Brucella sp. BO1] gi|306275163|gb|EFM56919.1| polyA polymerase family protein [Brucella sp. BO1] Length = 423 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 150/410 (36%), Positives = 232/410 (56%), Gaps = 6/410 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W + L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ Sbjct: 10 KADWLNAKPLQALFKALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN Sbjct: 70 AGFKPVPTGMEHGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++ Sbjct: 130 ALYVTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++ + W+ D LLR L+ D + + K+ + R L ++ + + Sbjct: 250 IHGLVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVK 308 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 LS +KK Y + ++ ++++ A D I ++L H+ Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDA 368 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P+FP+TG D++ GI G +G L + WI+S F L + L L + Sbjct: 369 PVFPVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSLDRSALLDKLDR 418 >gi|17986746|ref|NP_539380.1| poly(A) polymerase / tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23502417|ref|NP_698544.1| polyA polymerase family protein [Brucella suis 1330] gi|161619496|ref|YP_001593383.1| Poly-A polymerase/tRNA nucleotidyltransferase [Brucella canis ATCC 23365] gi|163843806|ref|YP_001628210.1| CCA-adding enzyme [Brucella suis ATCC 23445] gi|225627993|ref|ZP_03786029.1| CCA-adding enzyme [Brucella ceti str. Cudo] gi|225853031|ref|YP_002733264.1| CCA-adding protein [Brucella melitensis ATCC 23457] gi|254702274|ref|ZP_05164102.1| CCA-adding enzyme [Brucella suis bv. 5 str. 513] gi|254704806|ref|ZP_05166634.1| CCA-adding enzyme [Brucella suis bv. 3 str. 686] gi|254708220|ref|ZP_05170048.1| CCA-adding enzyme [Brucella pinnipedialis M163/99/10] gi|254710590|ref|ZP_05172401.1| CCA-adding enzyme [Brucella pinnipedialis B2/94] gi|254714773|ref|ZP_05176584.1| CCA-adding enzyme [Brucella ceti M644/93/1] gi|254717834|ref|ZP_05179645.1| CCA-adding enzyme [Brucella ceti M13/05/1] gi|256032084|ref|ZP_05445698.1| CCA-adding enzyme [Brucella pinnipedialis M292/94/1] gi|256045176|ref|ZP_05448075.1| CCA-adding enzyme [Brucella melitensis bv. 1 str. Rev.1] gi|256061606|ref|ZP_05451747.1| CCA-adding enzyme [Brucella neotomae 5K33] gi|256114127|ref|ZP_05454881.1| CCA-adding enzyme [Brucella melitensis bv. 3 str. Ether] gi|256160280|ref|ZP_05457974.1| CCA-adding enzyme [Brucella ceti M490/95/1] gi|256255485|ref|ZP_05461021.1| CCA-adding enzyme [Brucella ceti B1/94] gi|256263487|ref|ZP_05466019.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|260169219|ref|ZP_05756030.1| CCA-adding enzyme [Brucella sp. F5/99] gi|260565226|ref|ZP_05835710.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260565952|ref|ZP_05836422.1| polynucleotide adenylyltransferase [Brucella suis bv. 4 str. 40] gi|261219679|ref|ZP_05933960.1| polynucleotide adenylyltransferase protein [Brucella ceti M13/05/1] gi|261222691|ref|ZP_05936972.1| polynucleotide adenylyltransferase [Brucella ceti B1/94] gi|261315723|ref|ZP_05954920.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis M163/99/10] gi|261318161|ref|ZP_05957358.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis B2/94] gi|261322568|ref|ZP_05961765.1| polynucleotide adenylyltransferase protein [Brucella ceti M644/93/1] gi|261325612|ref|ZP_05964809.1| polynucleotide adenylyltransferase [Brucella neotomae 5K33] gi|261752841|ref|ZP_05996550.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 5 str. 513] gi|261755499|ref|ZP_05999208.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 3 str. 686] gi|261758730|ref|ZP_06002439.1| polynucleotide adenylyltransferase [Brucella sp. F5/99] gi|265989192|ref|ZP_06101749.1| polynucleotide adenylyltransferase [Brucella pinnipedialis M292/94/1] gi|265991606|ref|ZP_06104163.1| polynucleotide adenylyltransferase protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995444|ref|ZP_06108001.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265998655|ref|ZP_06111212.1| polynucleotide adenylyltransferase protein [Brucella ceti M490/95/1] gi|294852871|ref|ZP_06793544.1| poly(A) polymerase [Brucella sp. NVSL 07-0026] gi|17982373|gb|AAL51644.1| poly(a) polymerase / tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|23348404|gb|AAN30459.1| polyA polymerase family protein [Brucella suis 1330] gi|161336307|gb|ABX62612.1| Poly-A polymerase/tRNA nucleotidyltransferase [Brucella canis ATCC 23365] gi|163674529|gb|ABY38640.1| CCA-adding enzyme [Brucella suis ATCC 23445] gi|225617156|gb|EEH14202.1| CCA-adding enzyme [Brucella ceti str. Cudo] gi|225641396|gb|ACO01310.1| CCA-adding enzyme [Brucella melitensis ATCC 23457] gi|260151294|gb|EEW86388.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155470|gb|EEW90550.1| polynucleotide adenylyltransferase [Brucella suis bv. 4 str. 40] gi|260921275|gb|EEX87928.1| polynucleotide adenylyltransferase [Brucella ceti B1/94] gi|260924768|gb|EEX91336.1| polynucleotide adenylyltransferase protein [Brucella ceti M13/05/1] gi|261295258|gb|EEX98754.1| polynucleotide adenylyltransferase protein [Brucella ceti M644/93/1] gi|261297384|gb|EEY00881.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis B2/94] gi|261301592|gb|EEY05089.1| polynucleotide adenylyltransferase [Brucella neotomae 5K33] gi|261304749|gb|EEY08246.1| polynucleotide adenylyltransferase protein [Brucella pinnipedialis M163/99/10] gi|261738714|gb|EEY26710.1| polynucleotide adenylyltransferase [Brucella sp. F5/99] gi|261742594|gb|EEY30520.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 5 str. 513] gi|261745252|gb|EEY33178.1| polynucleotide adenylyltransferase protein [Brucella suis bv. 3 str. 686] gi|262553279|gb|EEZ09113.1| polynucleotide adenylyltransferase protein [Brucella ceti M490/95/1] gi|262766557|gb|EEZ12346.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263002390|gb|EEZ14965.1| polynucleotide adenylyltransferase protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093511|gb|EEZ17545.1| polynucleotide adenylyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661389|gb|EEZ31650.1| polynucleotide adenylyltransferase [Brucella pinnipedialis M292/94/1] gi|294821460|gb|EFG38459.1| poly(A) polymerase [Brucella sp. NVSL 07-0026] gi|326409573|gb|ADZ66638.1| CCA-adding protein [Brucella melitensis M28] gi|326539277|gb|ADZ87492.1| CCA-adding enzyme [Brucella melitensis M5-90] Length = 423 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 151/410 (36%), Positives = 234/410 (57%), Gaps = 6/410 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W + L + + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN Sbjct: 70 AGFKPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++ Sbjct: 130 ALYVTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++ + W+ D LLR L+ D + + K+ + R L ++ + + Sbjct: 250 IHGLVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVK 308 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 LS +KK Y + ++ ++++ A D I ++L H+ Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDA 368 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P+FP+TG D++ GI G +G L + WI+S F L +E L L + Sbjct: 369 PVFPITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 418 >gi|49474494|ref|YP_032536.1| Poly(A) polymerase [Bartonella quintana str. Toulouse] gi|49239998|emb|CAF26412.1| Poly(A) polymerase [Bartonella quintana str. Toulouse] Length = 417 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 151/386 (39%), Positives = 223/386 (57%), Gaps = 6/386 (1%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 +++ IVGGAVR+ L+ + DID+ATT P +V+ + +K IPT I++GT+ ++ + Sbjct: 29 GEEARIVGGAVRNQLLEQPISDIDVATTCFPQQVIARVEEAGFKAIPTGIAFGTVTVVAQ 88 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +++TTLRSD+ TDGR+AKV F RDW+ D+ RRDFT+NALY D G + D VGGLND+ Sbjct: 89 SCSYEVTTLRSDIETDGRHAKVAFDRDWQKDAERRDFTMNALYCDAAGNLYDAVGGLNDV 148 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 +RTI+FIG +RI EDYLRILRFFRFFA YG D GL A + K GL+ LSSERI Sbjct: 149 ASRTIRFIGIPENRIREDYLRILRFFRFFAWYGAGRPDVQGLKACVYLKHGLQKLSSERI 208 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E+ KLL A NP A++ M GI IF + ++ +D + +++ EQ WK+D LLR Sbjct: 209 WGEMKKLLAAPNPTRALLWMRQSGILTLIFPETEKWGIDAIHSLVKTEQALGWKVDPLLR 268 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L+ D + MA + L + L + + S ++KL Y YG + + Sbjct: 269 LESLLP-PDPIRLHEMAHRLHLSYKETKRLKEWAELEIISQNCSENFVQKLIYFYGRQPV 327 Query: 326 IAKLKIFLALHY-----NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKK 380 + +L + L + N Q +++ W+ P FP++G D++K G+ G Sbjct: 328 LDQLSLSLVAAHVDALKGNEALQKAENYMRLYQFAQKWQIPTFPVSGKDLMKKGLAKGVL 387 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHH 406 +G L ++ WI S F + + L Sbjct: 388 LGQKLKELERIWIESGFSIDRNSLLE 413 >gi|254719586|ref|ZP_05181397.1| CCA-adding enzyme [Brucella sp. 83/13] gi|265984594|ref|ZP_06097329.1| polynucleotide adenylyltransferase protein [Brucella sp. 83/13] gi|306837925|ref|ZP_07470785.1| polyA polymerase family protein [Brucella sp. NF 2653] gi|264663186|gb|EEZ33447.1| polynucleotide adenylyltransferase protein [Brucella sp. 83/13] gi|306407013|gb|EFM63232.1| polyA polymerase family protein [Brucella sp. NF 2653] Length = 423 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 151/410 (36%), Positives = 234/410 (57%), Gaps = 6/410 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W + L + + LN+ ++ +VGGAVR++L+ V D+D+ TT LP+ +R+ S+ Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLVTTHLPEETVRLASE 69 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT + YGTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN Sbjct: 70 AGFKPVPTGMEYGTITVVVQGHPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++ Sbjct: 130 ALYVTADGTVIDQVGGLADIEMRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++ ++ W+ D LLR L+ D + + K+ + R L ++ + + Sbjct: 250 IHGLVRTQRDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVK 308 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 LS +KK Y + ++ ++++ A D I ++L H+ Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGFARLLDAAEHYDA 368 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P+FP+TG D++ GI G +G L + WI+S F L +E L L + Sbjct: 369 PVFPVTGGDLLARGIEKGPGLGETLRSLETLWIDSGFSLDREALLRKLDR 418 >gi|256369969|ref|YP_003107480.1| polyA polymerase family protein [Brucella microti CCM 4915] gi|256000132|gb|ACU48531.1| polyA polymerase family protein [Brucella microti CCM 4915] Length = 423 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 151/410 (36%), Positives = 235/410 (57%), Gaps = 6/410 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W + L + + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN Sbjct: 70 AGFKPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++ Sbjct: 130 ALYVTADGTVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++ + W+ D LLR L+ D + + K+ + R L ++ + + Sbjct: 250 IHGLVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVK 308 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 LS +KK Y + ++ ++++ A + D I ++L H+ Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARHEAVGSDEAMIRAGGVARLLDAAEHYDA 368 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P+FP+TG D++ GI G +G L + WI+S F L +E L L + Sbjct: 369 PVFPITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 418 >gi|254694228|ref|ZP_05156056.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261214534|ref|ZP_05928815.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 3 str. Tulya] gi|260916141|gb|EEX83002.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 3 str. Tulya] Length = 423 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 150/410 (36%), Positives = 233/410 (56%), Gaps = 6/410 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W + L + + LN+ ++ VGGAVR++L+ V D+D+ATT LP+ +R+ S+ Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARAVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN Sbjct: 70 AGFKPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++ Sbjct: 130 ALYVTADGMVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL AS + K G+ +S+ERIWSE+ KLL A +P A++ M G+ + + ++ +D Sbjct: 190 GLRASARLKDGIAQISAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++ + W+ D LLR L+ D + + K+ + R L ++ + + Sbjct: 250 IHGLVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVK 308 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 LS +KK Y + ++ ++++ A D I ++L H+ Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDA 368 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P+FP+TG D++ GI G +G L + WI+S F L +E L L + Sbjct: 369 PVFPITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 418 >gi|239832436|ref|ZP_04680765.1| CCA-adding enzyme [Ochrobactrum intermedium LMG 3301] gi|239824703|gb|EEQ96271.1| CCA-adding enzyme [Ochrobactrum intermedium LMG 3301] Length = 417 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 152/410 (37%), Positives = 232/410 (56%), Gaps = 6/410 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W L + LN+ + +VGGAVR++L+ V D+D+ATT +PD +R+ ++ Sbjct: 8 KADWLKAKPLQALFKALNRDGGEVRVVGGAVRNTLLGTGVSDVDLATTHVPDETVRLATE 67 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT I +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN Sbjct: 68 AGFKPVPTGIEHGTITVVVQGHPFEVTTLRQDIETNGRHAKVAFGTDWKADAERRDFTIN 127 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALYA G +ID VGGL D+ +RT++FIGDA RI EDYLRILRFFRFFA YG +++ Sbjct: 128 ALYATADGTIIDDVGGLADIESRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 187 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL AS + K GL LS+ER+WSE+ KLL A +P A++ M GG+ I + ++ +D Sbjct: 188 GLRASARLKDGLSQLSAERVWSELKKLLSAPDPSRALLWMRQGGVLNLILPESEKWGIDA 247 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++ E W+ D LLR +I D + M K+ + R L ++ + + Sbjct: 248 IHGLVRTEADLGWQADPLLRLESIIP-PDSVRMEEMGKRLKMSNAERARLEAWARADAVK 306 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 LS +KK Y + ++ ++++ A D + ++L + Sbjct: 307 PELSEQALKKTIYRGSKQAVLDRIRLAYAAARAEAAGSDEAMVRAGGFARLLDTAERYDA 366 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P+FP+TG D++ GI G +G L + WI+S F L + L L + Sbjct: 367 PVFPVTGGDLLALGIQKGPGLGEALRSLETFWIDSGFSLDRTALLDKLDR 416 >gi|159185123|ref|NP_355207.2| poly(A) polymerase [Agrobacterium tumefaciens str. C58] gi|159140394|gb|AAK87992.2| poly(A) polymerase [Agrobacterium tumefaciens str. C58] Length = 418 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 158/417 (37%), Positives = 248/417 (59%), Gaps = 6/417 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ WF L I +LLN + IVGGAVR++LM+L V D+D+ATT+ P+ V+ Sbjct: 1 MNSLAGQDWFEKPALKRIFALLNADGGEVRIVGGAVRNALMDLPVVDVDMATTVTPNVVV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GT+ ++ + F++TTLR D+ T+GR+A+V F DW+ D+ RR Sbjct: 61 ERAKAAGIKSVPTGIEHGTVTLVIDGEGFEVTTLRRDVETNGRHAQVAFGTDWQTDAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TINALYA+++G++ID V GL D+ RT++FIGDA RI EDYLRILRFFRFFAHYG Sbjct: 121 DLTINALYANEKGEIIDLVDGLADVETRTVRFIGDAAMRISEDYLRILRFFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL AS +AK L LS+ER+WSE KL+ A++P A++ M G+ EI + ++ Sbjct: 181 RPDADGLRASARAKDKLGTLSAERVWSETKKLISARDPSRALLWMRQSGVLSEILPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + ++ EQ W D +LR ++ D++ + ++A + L + +L + + Sbjct: 241 WGIDAIHGLVATEQALGWAADPMLRLAAIVP-PDRERLAALAARLRLSKAEAAYLTHWAS 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----CFILQVLSDI 355 + + +L Y G + + +LK+ LA +L+ DT + +L+ Sbjct: 300 APAVDPEMKETALDRLLYRQGVEAVKTRLKLALASARADLSAGDTAMHKVARLSTLLTRA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++KP FPL+G DV+ G+ G KVG +L +++WI+ +F L + L L+ ++ Sbjct: 360 EKFRKPGFPLSGADVMAAGVEAGPKVGEVLKSLEEKWIDVNFSLDRAALTARLKDML 416 >gi|62290437|ref|YP_222230.1| polyA polymerase family protein [Brucella abortus bv. 1 str. 9-941] gi|82700360|ref|YP_414934.1| polynucleotide adenylyltransferase [Brucella melitensis biovar Abortus 2308] gi|189024667|ref|YP_001935435.1| polynucleotide adenylyltransferase [Brucella abortus S19] gi|237815945|ref|ZP_04594942.1| CCA-adding enzyme [Brucella abortus str. 2308 A] gi|254689739|ref|ZP_05152993.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 6 str. 870] gi|254697883|ref|ZP_05159711.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|254730774|ref|ZP_05189352.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 4 str. 292] gi|256257992|ref|ZP_05463528.1| Polynucleotide adenylyltransferase [Brucella abortus bv. 9 str. C68] gi|260546972|ref|ZP_05822711.1| polynucleotide adenylyltransferase [Brucella abortus NCTC 8038] gi|260755270|ref|ZP_05867618.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 6 str. 870] gi|260758491|ref|ZP_05870839.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 4 str. 292] gi|260762316|ref|ZP_05874659.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884285|ref|ZP_05895899.1| polynucleotide adenylyltransferase [Brucella abortus bv. 9 str. C68] gi|297248822|ref|ZP_06932540.1| poly(A) polymerase [Brucella abortus bv. 5 str. B3196] gi|62196569|gb|AAX74869.1| polyA polymerase family protein [Brucella abortus bv. 1 str. 9-941] gi|82616461|emb|CAJ11526.1| Polynucleotide adenylyltransferase [Brucella melitensis biovar Abortus 2308] gi|189020239|gb|ACD72961.1| Polynucleotide adenylyltransferase [Brucella abortus S19] gi|237789243|gb|EEP63454.1| CCA-adding enzyme [Brucella abortus str. 2308 A] gi|260096022|gb|EEW79899.1| polynucleotide adenylyltransferase [Brucella abortus NCTC 8038] gi|260668809|gb|EEX55749.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 4 str. 292] gi|260672748|gb|EEX59569.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675378|gb|EEX62199.1| polynucleotide adenylyltransferase protein [Brucella abortus bv. 6 str. 870] gi|260873813|gb|EEX80882.1| polynucleotide adenylyltransferase [Brucella abortus bv. 9 str. C68] gi|297175991|gb|EFH35338.1| poly(A) polymerase [Brucella abortus bv. 5 str. B3196] Length = 423 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 151/410 (36%), Positives = 233/410 (56%), Gaps = 6/410 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W + L + + LN+ ++ VGGAVR++L+ V D+D+ATT LP+ +R+ S+ Sbjct: 10 KADWLNAKPLQALFTALNRDGGEARAVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASE 69 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT + +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTIN Sbjct: 70 AGFKPVPTGMEHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTIN 129 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY G VID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++ Sbjct: 130 ALYVTADGMVIDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAE 189 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL AS + K G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D Sbjct: 190 GLRASARLKDGIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDA 249 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + ++ + W+ D LLR L+ D + + K+ + R L ++ + + Sbjct: 250 IHGLVRTQSDLGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADAVK 308 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 LS +KK Y + ++ ++++ A D I ++L H+ Sbjct: 309 PGLSEQALKKAIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDA 368 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P+FP+TG D++ GI G +G L + WI+S F L +E L L + Sbjct: 369 PVFPITGGDLLARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 418 >gi|153008942|ref|YP_001370157.1| polynucleotide adenylyltransferase region [Ochrobactrum anthropi ATCC 49188] gi|151560830|gb|ABS14328.1| Polynucleotide adenylyltransferase region [Ochrobactrum anthropi ATCC 49188] Length = 415 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 154/415 (37%), Positives = 233/415 (56%), Gaps = 6/415 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + W L + LN+ ++ +VGGAVR++L+ V D+D+ATT LP + Sbjct: 1 MNISGKADWLKAKPLQALFKALNRDGGEARVVGGAVRNTLLGTKVSDVDLATTHLPQDTV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R+ ++ +K +PT I +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RR Sbjct: 61 RLANEAGFKPVPTGIEHGTITVVVQGHPFEVTTLRQDIETNGRHAKVAFGTDWKADAERR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALY G VID VGGL D+ +RT++FIGDA RI EDYLRILRFFRFFA YG Sbjct: 121 DFTINALYVTADGGVIDDVGGLGDIESRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +++GL AS + K GL LS+ER+WSE+ KLL A +P A++ M G+ I + ++ Sbjct: 181 RPEAEGLRASARLKDGLTQLSAERVWSELKKLLSAPDPSRALLWMRQAGVLNLILPESEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + ++ E W+ D LLR +I D + M K+ + R L ++ Sbjct: 241 WGIDAIHGLVRTEADLGWQPDPLLRLESIIP-PDSVRMEEMGKRLKMSNAERARLEAWAR 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDI 355 + + LS +KK Y + ++ ++++ A + D I ++L Sbjct: 300 ADTVKPELSEQALKKTIYRGSKQAVLDRIRLAYAAARADAAGSDDAMIRAGGFARLLDAA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 H+ P+FP+TG D++ GI G +G L + WI+S F L + L L + Sbjct: 360 EHYDAPVFPVTGSDLLALGIEKGPGLGETLRSLETFWIDSGFSLDRATLLDKLDR 414 >gi|209550368|ref|YP_002282285.1| polynucleotide adenylyltransferase region [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536124|gb|ACI56059.1| Polynucleotide adenylyltransferase region [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 422 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 161/420 (38%), Positives = 238/420 (56%), Gaps = 11/420 (2%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGED-----KSCIVGGAVRDSLMNLSVQDIDIATTIL 55 M + WF D L IL LLN ++ +VGGAVR+SLM+L V DIDIATT+ Sbjct: 1 MTGLADQAWFRDPALGRILELLNADGGADGGGEARVVGGAVRNSLMDLPVSDIDIATTLR 60 Query: 56 PDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 P+ VM + K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKV F+ DWKA Sbjct: 61 PEAVMEKAAAAGIKAVPTGLQHGTVTLVVDGKPFEVTTLRTDVETDGRHAKVAFSTDWKA 120 Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D+ RRD T+NALYAD G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA Sbjct: 121 DAERRDLTMNALYADANGEVVDLVGGLADIERRNIRFIGDAAKRIAEDHLRILRFFRFFA 180 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +YG D++GL A A+ LK LS+ER+WSE+ KLL A +P A++ M + EI Sbjct: 181 YYGSGRPDAEGLKACSAARSKLKTLSAERVWSELRKLLSAADPGRALLWMRQVAVLTEIL 240 Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + + +D + ++ E+ W D LLR ++ D + ++A + L FL Sbjct: 241 PESERWGIDAIPSLVATEKALGWAPDPLLRLAAIVP-PDAARLEALAARLKLANAEAAFL 299 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQ 350 ++ +S ++L Y G + +LK+ L + + + + Sbjct: 300 KAWAMAAPVNDDMSSAAFERLLYRNGADGITTRLKLALGVARGKAEGDFDEMARSARLTK 359 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +L +W+KP FPL G DV+ GIP G +VG +L + +W+ +F + L L++ Sbjct: 360 LLDQAANWEKPQFPLNGGDVMSMGIPSGPRVGELLAGLENQWVEENFVSDRAALLARLQE 419 >gi|319781858|ref|YP_004141334.1| polynucleotide adenylyltransferase region [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167746|gb|ADV11284.1| Polynucleotide adenylyltransferase region [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 421 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 157/412 (38%), Positives = 233/412 (56%), Gaps = 6/412 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W D L +L L +G +++ + GGAVR++LM+ V DIDIATT LP+ +R Sbjct: 8 RADWLTDKHLQRLLFALAEGGEEARVAGGAVRNTLMDQPVADIDIATTCLPEETLRRAEA 67 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 R+K +PT I +GTI ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RRDFTIN Sbjct: 68 ERFKAVPTGIEHGTITVVAGGKPYEITTLRADIETDGRRAKVSFGRDWKLDAERRDFTIN 127 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALYA+ GKV+D VGG+ D+ R ++FIGD RI EDYLRILRFFRFFA YG+ D++ Sbjct: 128 ALYAEADGKVVDLVGGIADIEARRLRFIGDPEARIREDYLRILRFFRFFAWYGDGRPDAE 187 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K+GL LSSERIWSE+ KLL A +P A++ M G+ + ++ +D Sbjct: 188 GLKACARLKEGLAQLSSERIWSELKKLLSAPDPSRALLWMRQAGVLTAALPESEKWGIDA 247 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + + +A + W D LLR ++ D + S+A++ L L + + Sbjct: 248 IHGLAKAGKDLGWAPDPLLRLEAIVP-PDAARMKSLAERLKLSTAEADRLRHWALATAVE 306 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 + E+ K Y + + +L++ LA + + ++L W+K Sbjct: 307 PKTTEGELAKRLYRGDRQGFVDRLRLSLAAARMRAVEDNEALLEAGGFSRLLGFATKWEK 366 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 PLFPL G D+ G PG K+G IL + + EW+ + F ++ L + + Sbjct: 367 PLFPLKGADLTVLGATPGPKLGEILRNLEAEWVEAGFAPDRDALLKRAAEAL 418 >gi|90418300|ref|ZP_01226212.1| polynucleotide adenylyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90337972|gb|EAS51623.1| polynucleotide adenylyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 413 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 144/412 (34%), Positives = 226/412 (54%), Gaps = 6/412 (1%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + ++ W L +L+ L+ +++ IVGGAVR+S++ V DIDIATT LPD +R Sbjct: 3 ATTIEADWLTTPGLQTLLATLSADGEEARIVGGAVRNSVLGHPVSDIDIATTTLPDETVR 62 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 ++ +PT I +GT+ ++ + +++TTLR D+ TDGR+A V F RDWKAD+ RRD Sbjct: 63 RVEAAGFRAVPTGIEHGTVTVVTPEHAYEVTTLRRDIETDGRHAAVHFGRDWKADAERRD 122 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTINALYA G ++D VGG+ DL ++ ++FIGD+ RI EDYLRILRFFRFFA YG+ Sbjct: 123 FTINALYARADGSIVDLVGGIEDLGSQALRFIGDSETRIREDYLRILRFFRFFAWYGKGR 182 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D+ G+ A+ + K GL LS ER+W+E+ KLL A +P A++ M G+ I + + Sbjct: 183 PDAAGIRAATRLKDGLDGLSVERVWTELKKLLAAPDPSRALLWMRQTGVLTRILPESERW 242 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +D + ++E+E F W D +LR ++ D + MA++ L R ++ F Sbjct: 243 GIDAIHSLVESEGAFGWAPDPMLRLAAIVP-PDPARLTQMAERLKLSNADRDRIVGFAIA 301 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-----CFILQVLSDII 356 + S + Y + L++ +A + L + Sbjct: 302 EPAKPEESDSAFRTRLYFGDGVAIADGLRLAVASARGKAESSRETLDAIARLTGQLEIVA 361 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + P FP++G+D+ GI PG ++G L ++ W +S F L +E L + Sbjct: 362 TFAPPAFPVSGEDLKSAGIAPGPEMGKTLDRLRKLWASSGFVLGRESLLKRV 413 >gi|150397472|ref|YP_001327939.1| polynucleotide adenylyltransferase region [Sinorhizobium medicae WSM419] gi|150028987|gb|ABR61104.1| Polynucleotide adenylyltransferase region [Sinorhizobium medicae WSM419] Length = 419 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 157/417 (37%), Positives = 236/417 (56%), Gaps = 6/417 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M SI WF L I LLN + IVGGA+R+SLM L D+D+ATT P+ V+ Sbjct: 1 MTSIAAEPWFQAPQLRRIFDLLNADGGEVRIVGGAIRNSLMGLPAGDVDLATTWHPEDVI 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT I +GT+ ++ +++TTLR D+ TDGR A+V F DWKAD+ RR Sbjct: 61 QRARGAGIKSVPTGIDHGTVTLVIEGMPYEVTTLRRDVATDGRRAEVAFGADWKADAQRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALY + +G+V+D+VGGL+D+ RT++FIG A R+ EDYLRILRFFRFFAHYG Sbjct: 121 DFTINALYGNAEGEVLDHVGGLDDIATRTVRFIGSAAERVAEDYLRILRFFRFFAHYGSG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++GL A +A+ L LS+ER+W+E KLL A +P A++ M G+ E+ + ++ Sbjct: 181 RPDAEGLKACAQARTKLATLSAERVWTETKKLLSAVDPGRALLWMRQAGVLGEVLPETEK 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +I AE+ F W D LLR ++ D + +MAK+ L + +L F Sbjct: 241 WGIDAIPALISAEKSFSWHPDHLLRLAAMVP-PDVDRLEAMAKRLRLSKAESAYLDRFAK 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMI-----AKLKIFLALHYNNLTHQDTCFILQVLSDI 355 L+ + + Y +G + +I A + ++ ++L+ Sbjct: 300 APAIAPALADAALDRQLYRHGSEGIIVRLKLALAAARRKAETDPAMLAESASFQRLLARA 359 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 W++P+FPL+G DV++ GIP G +VG +L + WI +F + + L L L Sbjct: 360 DKWQRPVFPLSGADVLEAGIPAGPRVGEVLAELENLWIERNFSVERAKLVARLETLA 416 >gi|13472434|ref|NP_104001.1| poly(A) polymerase [Mesorhizobium loti MAFF303099] gi|14023180|dbj|BAB49787.1| probable poly(A) polymerase [Mesorhizobium loti MAFF303099] Length = 420 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 153/412 (37%), Positives = 236/412 (57%), Gaps = 6/412 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W D L +L+ L +G +++ I GGAVR++LM V D+DIATT LP ++R Sbjct: 8 RANWLADKHLQRLLAALAEGSEEARIAGGAVRNTLMGQPVADVDIATTCLPQEIIRRAEA 67 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT I +GT+ ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RRDFTIN Sbjct: 68 EGFKPVPTGIEHGTVTVVAGGKPYEITTLRADVETDGRRAKVSFGRDWKLDAERRDFTIN 127 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALYA+ G+V+D VGG+ D+ R ++FIGDA RI EDYLRILRFFRFFA YGE D++ Sbjct: 128 ALYAEADGRVVDLVGGIADIEARRLRFIGDAEARIREDYLRILRFFRFFAWYGEGRPDAE 187 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K+GL LS+ERIW+E+ KLL A +P A++ M G+ + ++ +D Sbjct: 188 GLKACARLKEGLAQLSAERIWAELKKLLSASDPSRALLWMRQAGVLSAALPESEKWGIDA 247 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + + +AE+ W D +LR ++ D + ++A++ L + + Sbjct: 248 IHGLTKAEKDLGWAADPMLRLEAIVP-PDAARMKTLAERLRFSTAESDRLRHWALATAVE 306 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 ++ E+ K Y + ++ +L++ LA + + ++L+ + W+K Sbjct: 307 PKVTEAELAKRLYRGDRQGLVDRLRLSLAGARVRAVEDNNALLEAGGFSRLLAFALKWEK 366 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 P+FPL G D+ G PG K+G IL + + EWI + F + L K + Sbjct: 367 PVFPLKGADLTALGATPGPKLGEILNNLETEWIEAGFAPDRGALLERAAKAL 418 >gi|260462573|ref|ZP_05810780.1| Polynucleotide adenylyltransferase region [Mesorhizobium opportunistum WSM2075] gi|259031769|gb|EEW33038.1| Polynucleotide adenylyltransferase region [Mesorhizobium opportunistum WSM2075] Length = 420 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 153/412 (37%), Positives = 230/412 (55%), Gaps = 6/412 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + W D L +L+ L +G +++ I GGAVR++LM V D DIATT LP+ +R Sbjct: 8 RADWLADKHLQRLLAALTEGGEEARIAGGAVRNTLMGQPVADTDIATTCLPEETIRRAQA 67 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K +PT I +GTI ++ K ++ITTLR+D+ TDGR AKV F RDWK D+ RRDFTIN Sbjct: 68 QGFKPVPTGIEHGTITVVAGGKPYEITTLRADIETDGRRAKVSFGRDWKLDAERRDFTIN 127 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALYA+ GKV+D VGG+ D+ R ++FIGD RI EDYLRILRFFRFFA YGE D++ Sbjct: 128 ALYAEADGKVVDLVGGIADIEARRLRFIGDPEARIREDYLRILRFFRFFAWYGEGRPDAE 187 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL LS+ER+WSE+ +LL A +P A++ M G+ + + +D Sbjct: 188 GLKACARLKDGLAQLSAERVWSELKRLLSAPDPSRALLWMRQAGVLTAALPESERWGIDA 247 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + + +AE+ W D++LR ++ D + +A++ L L + + Sbjct: 248 IHGLAKAEKDLGWPADAMLRLEAIVP-PDAARMKILAERLKLSTAEADRLRHWGLTAAVE 306 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKK 360 + E+ K Y + + +L++ LA + + ++L+ + W+K Sbjct: 307 PKTTEGELAKRLYRGDRQGFVDRLRLSLASARVRAVDDNDALLEAGGFSRLLAFALKWEK 366 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 P FPL G D+ G PG K+G IL + + EW+ + F + L K + Sbjct: 367 PSFPLKGADLTALGAKPGPKLGEILKNLEAEWVEAGFAPDRGALLERAAKAL 418 >gi|148560186|ref|YP_001259427.1| polyA polymerase family protein [Brucella ovis ATCC 25840] gi|148371443|gb|ABQ61422.1| polyA polymerase family protein [Brucella ovis ATCC 25840] Length = 405 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 149/400 (37%), Positives = 230/400 (57%), Gaps = 6/400 (1%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + + LN+ ++ +VGGAVR++L+ V D+D+ATT LP+ +R+ S+ +K +PT + Sbjct: 2 QALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLPEETVRLASEAGFKPVPTGM 61 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 +GTI ++ + F++TTLR D+ T+GR+AKV F DWKAD+ RRDFTINALY G V Sbjct: 62 EHGTITVVVQGYPFEVTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALYVTADGTV 121 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID VGGL D+ RT++FIGDA RI EDYLRILRFFRFFA YG +++GL AS + K Sbjct: 122 IDQVGGLADIETRTLRFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLRASARLKD 181 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 G+ LS+ERIWSE+ KLL A +P A++ M G+ + + ++ +D + ++ + Sbjct: 182 GIAQLSAERIWSEMKKLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHGLVRTQSD 241 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 W+ D LLR L+ D + + K+ + R L ++ + + LS +KK Sbjct: 242 LGWQADPLLRLESLVP-PDAVRMEELGKRMKMSNAERARLEAWARADVVKPGLSEQALKK 300 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL-----QVLSDIIHWKKPLFPLTGDDV 370 Y + ++ ++++ A D I ++L H+ P+FP+TG D+ Sbjct: 301 AIYRGSKQALLDRIRLAYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDAPVFPITGGDL 360 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GI G +G L + WI+S F L +E L L + Sbjct: 361 LARGIEKGPGLGETLRSLETLWIDSCFSLDREALLRKLDR 400 >gi|319406819|emb|CBI80452.1| poly(A) polymerase [Bartonella sp. 1-1C] Length = 417 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 154/411 (37%), Positives = 239/411 (58%), Gaps = 8/411 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W S++ +L +L+ +++ +VGGAVR+ L+ + DIDIATT LP ++++ + Sbjct: 9 QAAWLQSSNIQTLLRVLSLDGEEARVVGGAVRNQLLKQPISDIDIATTCLPQQIIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ +++TTLRSD+ TDGR+A+VVF+RDWK D+ RRDFTIN Sbjct: 69 IGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIQTDGRHAEVVFSRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY + G++ D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++ Sbjct: 129 ALYCNAAGEIYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A K GL LS ERIW E+ KLL A +P A++ M GI I + + +D Sbjct: 189 GLKACTHLKHGLHKLSPERIWGEMKKLLTALDPTRALLWMRQSGILTFILPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I+ EQ F+W++D LR LI D + MA++ L + + L + Sbjct: 249 IHSLIKTEQAFDWEVDPFLRLESLIP-PDVMRLHDMARRLHLSNKEKIRLKEWAELELIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNNLTHQDTCFILQVLSDIIHWK 359 +++L Y YG + ++ +L + LA L + ++ C+I + W+ Sbjct: 308 YDCPDILMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKAVQKEECYIR-LYQLARKWQ 366 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P FP++G D+++ G+ GK +G L + W+ S F + + L + + Sbjct: 367 IPTFPISGKDLLERGLVKGKFLGKKLKELESLWVESGFLIDRNKLLEKIEQ 417 >gi|319403812|emb|CBI77396.1| poly(A) polymerase [Bartonella rochalimae ATCC BAA-1498] Length = 417 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 154/411 (37%), Positives = 240/411 (58%), Gaps = 8/411 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q W S++ +L +L+ +++ +VGGAVR+ L+ + DIDIATT LP ++++ + Sbjct: 9 QVAWLQSSNIQTLLRVLSMDGEEARVVGGAVRNQLLQQPISDIDIATTCLPQQIIKRVEE 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 +K IPT I++GT+ ++ +++TTLRSD+ TDGR+A+VVF+RDWK D+ RRDFTIN Sbjct: 69 VGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIQTDGRHAEVVFSRDWKKDAERRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 ALY + G++ D VGGLND+ RT++FIG A RI EDYLRILRFFRFFA YG D++ Sbjct: 129 ALYCNAAGEIYDEVGGLNDIATRTVRFIGVAEQRICEDYLRILRFFRFFAWYGIGRPDAE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 GL A + K GL LS ERIW E+ KLL A +P A++ M GI I + + +D Sbjct: 189 GLKACTRLKHGLHKLSPERIWGEMKKLLTALDPTRALLWMRQSGILTFILPETERWGIDA 248 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I+ EQ F+W++D LR LI D + MA++ L + + L + Sbjct: 249 IHSLIKTEQAFDWEVDPFLRLESLIP-PDVMRLHDMARRLHLSNKEKIRLKEWAELELIN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNNLTHQDTCFILQVLSDIIHWK 359 +++L Y YG + ++ +L + LA L + ++ C+I + W+ Sbjct: 308 YDCPDILMQRLIYFYGRQPVLDQLALSLAAARDHTLKDSKAVQKEECYIR-LYQLARKWQ 366 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P FP++G D+++ G+ GK +G L + W+ S F + + L + + Sbjct: 367 IPTFPISGKDLLERGLVKGKFLGKKLKELESLWVESGFLIDRNKLLEKIEQ 417 >gi|304393674|ref|ZP_07375602.1| tRNA-nucleotidyltransferase 1 [Ahrensia sp. R2A130] gi|303294681|gb|EFL89053.1| tRNA-nucleotidyltransferase 1 [Ahrensia sp. R2A130] Length = 403 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 144/406 (35%), Positives = 234/406 (57%), Gaps = 7/406 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + W H L +L+LLN GE ++ I GGAVR+SL++ + D+D+ATT++P V+ Sbjct: 1 MAEHIDQPWLHRPQLQALLALLNDGEGEAKIAGGAVRNSLLDQPIADVDVATTLVPSEVV 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 +K +PT I +GT+ I +++TTLR+D+ TDGR+A VVF DW+AD+ RR Sbjct: 61 ERLKSAGHKSVPTGIDHGTVTAIIDGDAYEVTTLRADVETDGRHATVVFGTDWEADARRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D T+NALY D G V D +GG+ D+ + FI DA RI EDYLRILRFFRFFA YG+ Sbjct: 121 DLTMNALYLDADGTVFDPLGGMQDVLAARVVFIDDATQRIREDYLRILRFFRFFAWYGKF 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D+DGL A + K GL+ LS+ER+W E++K+L A +P+ A++ M G+ +I + + Sbjct: 181 RPDADGLRACAREKDGLEGLSAERVWQELSKMLAAPDPVRAVLWMRQTGVLSKILPESEN 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D + +IE E+ +W+ D++LR + ++ + + + S ++ LP +R L+++ Sbjct: 241 WGIDGIHPLIETEKERKWEPDAVLRLMAILPPME-ERVASATERLKLPNSVRDRLLAWAQ 299 Query: 301 CNFNQKTLSIPEIKKLFYLY-GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + Y D+ + +L++ +A + D + L + W+ Sbjct: 300 LELPAAKTKQEAFARFLYRTNNDQAVTDRLRLAIA-----TSDADAKKRRRQLKWLKRWQ 354 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 +P+ P+ G D++ G+ PG + L ++ WI+S F LS E+L Sbjct: 355 RPILPVRGADLIAAGMEPGPAISERLSKMEERWIDSDFALSSEELL 400 >gi|148666981|gb|EDK99397.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Mus musculus] Length = 440 Score = 359 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 123/409 (30%), Positives = 212/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 41 PEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQ 100 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 101 SAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 160 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ ++ + Sbjct: 161 INSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGD 220 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ G+ I L Sbjct: 221 HDHETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLGVAPHIGLPANA- 279 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +L++ ++V + + F K +L L QD + L + + + +E + + F Sbjct: 280 NLEEFNKVSKNVEGFSPKPMTL--LASLFKVQDDVTKLDL--RLKISKEEKN--LGLFIV 333 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D V+ ++ A L +Q +L ++ W P Sbjct: 334 KNRKDLIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEH---GLLKEMQQWSVP 390 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +++ +++L ++K Sbjct: 391 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 439 >gi|33859692|ref|NP_081572.1| CCA tRNA nucleotidyltransferase 1, mitochondrial [Mus musculus] gi|37537798|sp|Q8K1J6|TRNT1_MOUSE RecName: Full=CCA tRNA nucleotidyltransferase 1, mitochondrial; AltName: Full=mitochondrial tRNA nucleotidyl transferase, CCA-adding; Short=mt CCA-adding enzyme; Short=mt tRNA CCA-diphosphorylase; Short=mt tRNA CCA-pyrophosphorylase; Short=mt tRNA adenylyltransferase; Flags: Precursor gi|21619331|gb|AAH31764.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Mus musculus] gi|74177896|dbj|BAE39032.1| unnamed protein product [Mus musculus] gi|74220479|dbj|BAE31459.1| unnamed protein product [Mus musculus] gi|148666980|gb|EDK99396.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_a [Mus musculus] Length = 434 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 123/409 (30%), Positives = 212/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ ++ + Sbjct: 155 INSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ G+ I L Sbjct: 215 HDHETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLGVAPHIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +L++ ++V + + F K +L L QD + L + + + +E + + F Sbjct: 274 NLEEFNKVSKNVEGFSPKPMTL--LASLFKVQDDVTKLDL--RLKISKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D V+ ++ A L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEH---GLLKEMQQWSVP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +++ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 433 >gi|16416453|dbj|BAB70663.1| tRNA-nucleotidyltransferase [Mus musculus] Length = 434 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 122/409 (29%), Positives = 211/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+ RF+ ++ + Sbjct: 155 INSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYIRFYGRIVDRPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ G+ I L Sbjct: 215 HDHETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLGVAPHIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +L++ ++V + + F K +L L QD + L + + + +E + + F Sbjct: 274 NLEEFNKVSKNVEGFSPKPMTL--LASLFKVQDDVTKLDL--RLKISKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D V+ ++ A L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEH---GLLKEMQQWSVP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +++ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKK 433 >gi|327188338|gb|EGE55555.1| poly(A) polymerase protein [Rhizobium etli CNPAF512] Length = 425 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 161/423 (38%), Positives = 238/423 (56%), Gaps = 14/423 (3%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKS--------CIVGGAVRDSLMNLSVQDIDIAT 52 M + WF D L IL+LLN G +VGGAVR+SLM L V DIDIAT Sbjct: 1 MTGLADQAWFRDPALGRILALLNAGGGAGGGSDGGEGRVVGGAVRNSLMGLPVSDIDIAT 60 Query: 53 TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD 112 T+ P+ V+ + K +PT + +GT+ ++ K F++TTLR+D+ TDGR+AKVVF+ D Sbjct: 61 TLTPEIVIERAAAAGIKAVPTGLQHGTVTLVIDGKPFEVTTLRTDVETDGRHAKVVFSTD 120 Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 WKAD+ RRD TINALYAD +G+V+D VGGL D+ R I+FIGDA RI ED+LRILRFFR Sbjct: 121 WKADAERRDLTINALYADARGEVVDLVGGLADIEARNIRFIGDAATRIAEDHLRILRFFR 180 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 FFA+YG D++GL A A+ LK LS+ER+WSE+ KLL A +P A++ M + Sbjct: 181 FFAYYGSGRPDAEGLKACAAARSKLKTLSAERVWSELRKLLGAADPGRALLWMRQVAVLT 240 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 EI + + +D + ++ E+ W D LLR ++ D + ++A + L Sbjct: 241 EILPETERWGIDAIPALVATEKALGWAPDPLLRLAAIVP-PDAARLEALAARLKLSNAEA 299 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCF 347 L ++ ++ ++L Y G + +LK+ L + + Sbjct: 300 AALKAWAMAAPIDDEITSAAFERLLYRNGADGITTRLKLALGVARAKAEGDLSEMARSAR 359 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + ++L + WKKP FP+ G DV+ GIP G +VG +L + +W+ +F + L Sbjct: 360 LGKLLDRAMTWKKPQFPVNGADVIAAGIPSGPRVGELLGSLENQWVEENFASDRAVLLAR 419 Query: 408 LRK 410 L++ Sbjct: 420 LQE 422 >gi|224066641|ref|XP_002186976.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1 [Taeniopygia guttata] Length = 517 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 130/412 (31%), Positives = 206/412 (50%), Gaps = 18/412 (4%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 Q + L ++ L K + I GGAVRD L ++ QDID ATT P + +F+ Sbjct: 119 PQFQALFTPGLRSVAELFEKKNYELRIAGGAVRDLLSGVTPQDIDFATTATPAEMKEMFT 178 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D++TDGR+A+V FT DW D+ RRD T Sbjct: 179 AAGVRLINNKGEKHGTITARLHEQNFEITTLRIDVVTDGRHAEVEFTTDWHKDAERRDLT 238 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +N+++ G + D+ G DL N+ I+F+G A RI EDYLRILR+FRF+ EK D Sbjct: 239 VNSMFLGLDGTLYDFFNGYEDLINKKIRFVGKAAERIQEDYLRILRYFRFYGRIAEKPGD 298 Query: 184 SD--GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + L A + KGL +S ERIW E+ K+L + + I MY I + I L + + Sbjct: 299 HEPNTLQAIKENAKGLAGISGERIWVELKKILLGNHVNHLIQLMYELDIAQYIGLPL-DG 357 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +L++ ++V + Q K ++ L +D + L + + + +E + + Sbjct: 358 NLEEFARVSKNIQNLSPKPMTV--LTSLFKGKDDVTNLDL--RLKISKEEKNLGLFLIKH 413 Query: 302 NFNQKTLSIPEIKKLF--YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 PE + + +L + KIF L Y +L ++ W Sbjct: 414 RQELTKGPGPEPLRPYQDFLMDSREANTNSKIFELLKYQGEEQ--------LLKEMQEWT 465 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P FP++G D+ K G+ GK++G L + EW S + + +E+L L+KL Sbjct: 466 VPSFPVSGHDLRKMGMSSGKEIGTALQQLRDEWKKSGYHMDKEELLSCLKKL 517 >gi|66730382|ref|NP_001019432.1| tRNA-nucleotidyltransferase 1, mitochondrial [Rattus norvegicus] gi|66267368|gb|AAH95841.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Rattus norvegicus] gi|111493965|gb|AAI05613.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Rattus norvegicus] Length = 434 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 124/409 (30%), Positives = 209/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P + +F Sbjct: 35 PEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTEMKEMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 AAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVSTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K D Sbjct: 155 INSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 184 SD--GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDRETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLDVASHIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +L++ ++V + + F K ++ L QD + L + + + +E + + F Sbjct: 274 NLEEFNKVSKNVEGFSPKPMTV--LASLFKVQDDVTKLDL--RLKISKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D V+ ++ A L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEH---ALLKEMQQWSVP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|301760376|ref|XP_002915988.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 436 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 123/409 (30%), Positives = 210/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGIKPQDVDFATTATPAQMKDMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNKGEKHGTITARLHEENFEITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFSGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + + L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYLGLPTNA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ ++V + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFNKVSKNVDGFSPKPMTL--LASLFKVQDDVTKLDL--RLKISKEEKN--LGIFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D ++ ++ + L +Q +L + W P Sbjct: 328 KNRKDLVKAADSSEPLKPYQDFIIDSRESEAMTRVCELLKYQGEH---GLLQQMQQWCIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|296225724|ref|XP_002758621.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial [Callithrix jacchus] Length = 434 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 125/409 (30%), Positives = 209/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPIQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ I+F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKIRFVGQAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVASYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFDKVSKNVEGFSPKPMTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 328 KNRKDLIKAADTSEPLKPYQDCIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|281346452|gb|EFB22036.1| hypothetical protein PANDA_004022 [Ailuropoda melanoleuca] Length = 434 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 123/409 (30%), Positives = 210/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGIKPQDVDFATTATPAQMKDMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNKGEKHGTITARLHEENFEITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFSGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + + L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYLGLPTNA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ ++V + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFNKVSKNVDGFSPKPMTL--LASLFKVQDDVTKLDL--RLKISKEEKN--LGIFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D ++ ++ + L +Q +L + W P Sbjct: 328 KNRKDLVKAADSSEPLKPYQDFIIDSRESEAMTRVCELLKYQGEH---GLLQQMQQWCIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|126336363|ref|XP_001374161.1| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1 [Monodelphis domestica] Length = 436 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 127/409 (31%), Positives = 210/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L N+ L +K + + I GGAVRD L QD+D ATT P ++ +F Sbjct: 37 PEFQSLFTEGLKNLAELFSKEKYELRIAGGAVRDLLNGTKPQDVDFATTATPAQMKEMFQ 96 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ITDGR+A+V FT DW+ D+ RRD T Sbjct: 97 AAGIRLINNKGEKHGTITARLHEENFEITTLRIDVITDGRHAEVEFTTDWQKDAERRDLT 156 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + D+ G DL+N+ ++F+GD RI EDYLRILR+FRF+ ++ Sbjct: 157 INSMFLGFDGTLFDFFNGYEDLKNKKVRFVGDPKERIQEDYLRILRYFRFYGRIADRPGT 216 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 DS L A + KGL +S ERIW E+ K+L + + + MY+ + + L Sbjct: 217 HDSKTLEAIKENAKGLAGISGERIWVELKKILVGNHANHLVHLMYDLDVAHYLGLP-AAG 275 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ + V + + K +L L QD L + + + +E + + F Sbjct: 276 SLEEFNTVSKNVETLSPKPMTL--LASLFKVQDDVKNLDL--RLKIAKEEKN--LGLFIV 329 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D V+ ++ L L +Q + +L ++ W P Sbjct: 330 KHRKDLIKAADSSEPLKPYQDFVLDSREPDTLGRICELLKYQGE---VDLLKEMQQWSIP 386 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G DV K GI GK++G IL +++W S +++ +E+L ++K Sbjct: 387 PFPVSGHDVRKVGISSGKEIGLILQQLREQWKKSGYKMDKEELLSFVKK 435 >gi|149728339|ref|XP_001496927.1| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 1 [Equus caballus] Length = 434 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 123/409 (30%), Positives = 208/409 (50%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPAQMKEMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNKGEKHGTITARLHEENFEITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLQNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKLGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDPETLEAIAENAKGLAAISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + + K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFDKVSKNVEGLSPKPMTL--LASLFKVQDDVTKLDL--RLKISKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSEPLKPYQDFIIDSRESDATTRVCELLKYQGEQ---CLLKEMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L ++ W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLRERWKKSGYQMEKDELLSYIKK 433 >gi|297670810|ref|XP_002813548.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like isoform 1 [Pongo abelii] gi|297670812|ref|XP_002813549.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like isoform 2 [Pongo abelii] Length = 434 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 125/409 (30%), Positives = 209/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFDKVSKNVEGFSPKPMTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 328 KNKKDLIKATDSSEPLKPYQDFIIDSREPDAPTRVCELLKYQGEH---CLLKEMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|332231563|ref|XP_003264964.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial [Nomascus leucogenys] Length = 434 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 124/409 (30%), Positives = 208/409 (50%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPSQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFDKVSKNVEGFSPKPMTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|30750040|pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme gi|30750041|pdb|1OU5|B Chain B, Crystal Structure Of Human Cca-Adding Enzyme Length = 448 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 125/409 (30%), Positives = 207/409 (50%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID ATT P ++ +F Sbjct: 49 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQ 108 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 109 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 168 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 169 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 228 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 229 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 287 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + F K +L L QD + L + + + +E + + F Sbjct: 288 SLEEFDKVSKNVDGFSPKPVTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 341 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 342 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 398 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 399 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 447 >gi|109035906|ref|XP_001100764.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial isoform 2 [Macaca mulatta] Length = 439 Score = 351 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 124/409 (30%), Positives = 209/409 (51%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L N+ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKNLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNKGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D++ L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDAETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFDKVSKNVEGFSPKPMTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L +++ Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKR 433 >gi|4929563|gb|AAD34042.1|AF151805_1 CGI-47 protein [Homo sapiens] gi|15214805|gb|AAH12537.1| TRNT1 protein [Homo sapiens] Length = 405 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 125/409 (30%), Positives = 207/409 (50%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID ATT P ++ +F Sbjct: 6 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQ 65 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 66 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 125 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 126 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 185 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 186 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 244 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + F K +L L QD + L + + + +E + + F Sbjct: 245 SLEEFDKVSKNVDGFSPKPVTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 298 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 299 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 355 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 356 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 404 >gi|296452848|sp|Q96Q11|TRNT1_HUMAN RecName: Full=CCA tRNA nucleotidyltransferase 1, mitochondrial; AltName: Full=Mitochondrial tRNA nucleotidyl transferase, CCA-adding; AltName: Full=mt CCA-adding enzyme; AltName: Full=mt tRNA CCA-diphosphorylase; AltName: Full=mt tRNA CCA-pyrophosphorylase; AltName: Full=mt tRNA adenylyltransferase; Flags: Precursor Length = 434 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 125/409 (30%), Positives = 207/409 (50%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFDKVSKNVDGFSPKPVTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|155030240|ref|NP_886552.2| CCA tRNA nucleotidyltransferase 1, mitochondrial [Homo sapiens] gi|16416451|dbj|BAB70662.1| tRNA-nucleotidyltransferase [Homo sapiens] gi|119584290|gb|EAW63886.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Homo sapiens] gi|119584293|gb|EAW63889.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_b [Homo sapiens] gi|158261845|dbj|BAF83100.1| unnamed protein product [Homo sapiens] gi|168278132|dbj|BAG11044.1| tRNA-nucleotidyltransferase 1 [synthetic construct] gi|190690285|gb|ACE86917.1| tRNA nucleotidyl transferase, CCA-adding, 1 protein [synthetic construct] gi|190691659|gb|ACE87604.1| tRNA nucleotidyl transferase, CCA-adding, 1 protein [synthetic construct] Length = 434 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 125/409 (30%), Positives = 207/409 (50%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFDKVSKNVDGFSPKPVTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|114326216|ref|NP_001039341.1| tRNA-nucleotidyltransferase 1, mitochondrial [Bos taurus] gi|92096972|gb|AAI14832.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Bos taurus] gi|296474963|gb|DAA17078.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Bos taurus] Length = 434 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 124/409 (30%), Positives = 208/409 (50%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L + + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVRENHELRIAGGAVRDLLSGVKPQDVDFATTATPAQMKELFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SVGIRMINNKGEKHGTITARLHEENFEITTLRIDVATDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KN 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ + + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGQAKQRIQEDYLRILRYFRFYGKIVDTPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y + I L Sbjct: 215 HDPETLEAIAENAKGLAGVSGERIWVELKKILTGDHVNHLIHLIYELDVAPYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ ++V + + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFNKVSKNVEGFSPKPMTL--LTSLFKVQDDVTKLDL--RLKISKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D ++ ++ A L +Q +L + W P Sbjct: 328 KNRKDLIKAVDSSEPLKPYQDFIIDSREADATARVCELLKYQGEH---GLLKQMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +QL +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGVLLQQLREQWKKSGYQLEKDELLSYIKK 433 >gi|114585219|ref|XP_001140761.1| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 1 [Pan troglodytes] gi|114585221|ref|XP_001140902.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial isoform 3 [Pan troglodytes] Length = 434 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 124/409 (30%), Positives = 207/409 (50%), Gaps = 13/409 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID A+T P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFASTATPTQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + F K +L L QD + L + + + +E + + F Sbjct: 274 SLEEFDKVSKNVDGFSPKPMTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 328 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 385 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 433 >gi|154252684|ref|YP_001413508.1| polynucleotide adenylyltransferase region [Parvibaculum lavamentivorans DS-1] gi|154156634|gb|ABS63851.1| Polynucleotide adenylyltransferase region [Parvibaculum lavamentivorans DS-1] Length = 417 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 148/414 (35%), Positives = 224/414 (54%), Gaps = 5/414 (1%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ + W ++ D ++ L + VGGAVR+ LM V DIDIATT PD + Sbjct: 6 SLARAAWLNEPDTRAVMEALAAKGGTARFVGGAVRNQLMGEPVSDIDIATTETPDAAKAL 65 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 KV+PT I +GTI + ++F+ITTLR D+ TDGR A V FT DW AD+ RRDF Sbjct: 66 LEAKGIKVVPTGIDHGTITAVTPTRHFEITTLRVDVKTDGRRADVAFTEDWTADAGRRDF 125 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 T+NALY D G + D +GGL DL+ R ++FIGDAH RI EDYLRILRFFRF A YG+ Sbjct: 126 TMNALYGDADGTIHDPLGGLADLKARRVRFIGDAHERIREDYLRILRFFRFHAWYGKGEP 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D GL A+ + ++GL+ LS ER+ E+ K + A N A M GI + + + + Sbjct: 186 DEAGLRAAAEEREGLRQLSGERVRDELFKTITADNAAAAFRQMAAAGILQIVLPEASRLD 245 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + IEA+Q+F K D +LR ++ DK + ++A + L R LI+ Sbjct: 246 RFEKLVEIEAQQLFVQKPDPVLRLGAMLD-LDKAGVEALAARLKLSNRDRDRLIAMLTDT 304 Query: 303 FNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 LS+ E+++ Y G ++ ++ + A + +L+ W+KP Sbjct: 305 TKIVCYLSMREVRRALYQMGLQLFKDRVSLGWAEDRRG---HNAFQWRAMLAMADSWEKP 361 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + PLTG+ + G+P G ++G I ++ WI+S F + + L+ ++ ++ Sbjct: 362 VLPLTGEMIKAAGVPEGPQIGRIRDEVEEWWIDSDFIDDEFSIIERLKAIVQAT 415 >gi|291408736|ref|XP_002720670.1| PREDICTED: CG2100-like [Oryctolagus cuniculus] Length = 431 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 123/412 (29%), Positives = 208/412 (50%), Gaps = 13/412 (3%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + + L ++ L + + I GGAVRD L + QD+D ATT P ++ + Sbjct: 27 VQSPEFQSLFTEGLKSLTELFVRENHELRIAGGAVRDLLAGVKPQDVDFATTATPAQMKQ 86 Query: 62 IFSKTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 +F ++I +GT+ ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RR Sbjct: 87 MFQAAGVRMINNKGEKHGTVTARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERR 146 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D TIN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ EK Sbjct: 147 DLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGQAKQRIQEDYLRILRYFRFYGRVVEK 206 Query: 181 N--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 D + L A + GL +S ERIW E+ K+L ++ + + +Y+ + I L Sbjct: 207 PGEHDPETLEAIAENAHGLAGISGERIWVELKKILTGRHVHHLVHLIYDLHVAPHIGLPA 266 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 SL++ ++V + + F K ++ L QD + L + + + +E + + Sbjct: 267 SA-SLEEFNKVTKNVEGFSPKPMTV--LASLFKAQDDVTKLDL--RLKISKEEKN--LGL 319 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 F + + + + Y D V+ + A L +Q +L + W Sbjct: 320 FIVKNRKDLVRAADSSESLRPYQDFVIDCREPDAAARVCELLKYQGEH---GLLEQMRGW 376 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P FP++G D+ K G+ G+++G +L + W S +Q+ +E+L +RK Sbjct: 377 SVPPFPVSGHDLRKEGVSSGREIGALLQQLRARWKKSGYQMDKEELLSSIRK 428 >gi|114569280|ref|YP_755960.1| polynucleotide adenylyltransferase region [Maricaulis maris MCS10] gi|114339742|gb|ABI65022.1| Polynucleotide adenylyltransferase region [Maricaulis maris MCS10] Length = 419 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 143/411 (34%), Positives = 208/411 (50%), Gaps = 12/411 (2%) Query: 5 VQHKWFHDSDLINILSLLNKGE-DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 +H W D + +++ L +S VGG VR++L+ V DIDIAT + PD+V+ Sbjct: 15 ARHGWLTDPATVRVMAALAAAGQGESRFVGGCVRNALLGEPVADIDIATQLDPDQVIAAA 74 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 K +PT ++GTI ++C + F++T+LR D+ TDGR A V FTRDW D+ RRDF Sbjct: 75 KAAGLKPVPTGKAHGTITVVCDGQPFEVTSLRRDVATDGRRAVVSFTRDWAEDAKRRDFR 134 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +NALYAD G V D GGL D+ NR F+GD RI EDYLRILR FRF A YG D Sbjct: 135 LNALYADADGTVFDPTGGLKDVENRRFVFVGDPEMRIREDYLRILRLFRFEAWYGRGAPD 194 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + A +K ++GL LS ER+W+E+ KLL A++PL A+ M G+ I SL Sbjct: 195 EAAMAAVLKHREGLHKLSVERVWAELKKLLAAQDPLAAVTAMRESGLLDMILG--VNGSL 252 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN--- 300 LS +I + + DS+LRF L + I +MA K + + L N Sbjct: 253 RVLSGIIAQDVEYGLAPDSMLRFAALADG-GPERIRTMAAKMKMSKAEAGRLEGAVNPVA 311 Query: 301 -CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + + ++ G + ++++ A + WK Sbjct: 312 REDVRKAWSDSAAAERAIMALGARAFEDQVRLEAA----GEVAPPPRDWTLLAQFAREWK 367 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +P FP+ G D++ G PG +G+ L K WI F+ ++E+L L K Sbjct: 368 EPEFPVKGGDLILLGYEPGPMLGDALDELKALWIADRFEPTKEELIARLTK 418 >gi|209154746|gb|ACI33605.1| tRNA-nucleotidyltransferase 1, mitochondrial precursor Mitochondrial [Salmo salar] Length = 430 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 13/410 (3%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K L I + K + + I GGAVRD L +D+D ATT P+ + +F Sbjct: 30 TTEFKSLFSDGLNGIAEIFEKHKFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMF 89 Query: 64 SKTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 K ++I +GTI + F++TTLR D+ TDGR+A+V FT DW+ D+ RRD Sbjct: 90 QKAGIRMINNKGEKHGTITARLHNENFEVTTLRVDVETDGRHAEVEFTTDWQKDAERRDL 149 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TIN+++ G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ K Sbjct: 150 TINSMFLGLDGTLYDYFQGYEDLKNRKVRFVGSAEQRIQEDYLRILRYFRFYGRVSVKAA 209 Query: 183 DSD--GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + D L A + +GL +S ERIW E+ K++ + + + MY G+ + I L E Sbjct: 210 EHDPATLEAIRENARGLAAISGERIWVELKKMVVGNHAAHLLKVMYELGLAQYIGLP-AE 268 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +++L Q+ + + K ++L + S + + M + + RE + + F Sbjct: 269 GDVEELKQIWQHVKDHSPKPVTVLSALFRCS----QDVEKMDLRLKVSREEKN--LGLFL 322 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + + Y D ++ ++ + L +Q ++L+++ W Sbjct: 323 VKHRRDLHKSQDDPDSLKPYTDFIIDSREVDAQSKVCELLKYQGE---DKLLAEMSRWSI 379 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P FP++G D+ K GI GK++G L + + W S +Q+ +++L + K Sbjct: 380 PRFPVSGHDLRKMGITSGKEIGTTLQNLRDVWKRSRYQMDKDELLCHVNK 429 >gi|27377580|ref|NP_769109.1| poly(A) polymerase [Bradyrhizobium japonicum USDA 110] gi|27350724|dbj|BAC47734.1| poly(A) polymerase [Bradyrhizobium japonicum USDA 110] Length = 418 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 129/410 (31%), Positives = 198/410 (48%), Gaps = 6/410 (1%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + W +L LL +++ +VGGAVR++L+ L DIDIATT P+ V+R Sbjct: 7 LADAPWLISGGTARVLQLLGADGEEARVVGGAVRNALLGLVPGDIDIATTARPEEVVRRA 66 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 K +PT I +GT+ ++ +++TTLR D T GR AKV F RDW D+ RRDFT Sbjct: 67 KAAGIKSVPTGIDHGTVTLVIDGHPYEVTTLREDTETFGRKAKVAFGRDWVKDAERRDFT 126 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +N L D G V D+VGG+ D R R ++FIGD RI EDYLRILRFFR A +G D Sbjct: 127 MNGLSVDATGVVYDHVGGIADARARRVRFIGDPDQRIAEDYLRILRFFRIHAAFGAGEPD 186 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 DG +A I+ + GL LS+ER+ E+ KLL A A++ M GG+ + + V Sbjct: 187 RDGYLACIRGRAGLASLSAERVRMEMLKLLVAGGASAAVLAMAEGGLLQALIGGVAYTG- 245 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 L+ ++ E+ R L + + +A + L L S + + Sbjct: 246 -PLASMVAIERELGLPASVTRRLAAL-TVAVTEDAKRVATRLRLSNAEAKALDSMGHRWW 303 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 T ++L Y G + ++ + A ++ + ++ W P F Sbjct: 304 RFATKDEANARRLLYRLGAERYHDRVLLGWARAAGDV---HSSRWRELAELPQRWTAPKF 360 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 PL D + G+ G +G++L + W+ + F L + L + + A Sbjct: 361 PLRAADFIARGMAEGPALGHVLTLAEDAWLAADFPLEEAALASIADQAAA 410 >gi|304570787|ref|YP_002515788.2| poly(A) polymerase/tRNA-nucleotidyltransferase [Caulobacter crescentus NA1000] Length = 417 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 207/417 (49%), Gaps = 13/417 (3%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 I W + +++ L + VGG VR++LM V DIDIATT+ PD V+ Sbjct: 6 IGNAPWIALPETKAVIAALEARGYAGCARFVGGCVRNTLMGKPVDDIDIATTLTPDLVID 65 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + IPT + +GTI + + ++ITTLR D+ TDGR A V FT+DW D+ RRD Sbjct: 66 ALEQAGLRAIPTGVDHGTITAVSGGRPYEITTLRKDVSTDGRRAVVAFTQDWNQDAERRD 125 Query: 122 FTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 F NALYAD G+V D G G+ D + F+GD RI EDYLRILRFFRF A YG Sbjct: 126 FRFNALYADTDGRVYDPTGEGIRDAHEGRVVFVGDPMTRIREDYLRILRFFRFQAWYGRG 185 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D GL A K + ++ER E+ K+L A +P A M + I V+ Sbjct: 186 EPDQKGLAACKALKGMVSGRAAERTQKELMKMLAADDPRPAFRLMAATSVLSSILPSVKS 245 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 ++ + IE EQ+FE D LR LI D K +A++ LP +R L+ Sbjct: 246 LARFEALVGIETEQLFENDPD--LRLAALIPD-DPKVAEQLAERLRLPNNVRDRLVEAVG 302 Query: 301 CNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 N + P E ++ Y G + ++K+ A + T +L+ W Sbjct: 303 KNPRVVSWMSPREARRAVYGLGTRTFCDRIKLAWAGSGRDST---APQWRALLALAETWN 359 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P FPL+G++V+K G+P G VG ++ + WI+ F ED + +L A +Q Sbjct: 360 PPAFPLSGEEVMKAGVPKGPMVGEVMREIELWWIDQDFI---EDKFSAIERLKAVAQ 413 >gi|149412778|ref|XP_001506360.1| PREDICTED: similar to tRNA-nucleotidyltransferase, partial [Ornithorhynchus anatinus] Length = 433 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 121/408 (29%), Positives = 210/408 (51%), Gaps = 13/408 (3%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ + K + I GGAVRD L D+D ATT PD++ +F Sbjct: 35 PEFQALFTQGLKSVAEIFVKENHEIRIAGGAVRDLLSGTPPHDVDFATTATPDQMKMMFK 94 Query: 65 KTRYKVI-PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I ++GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 AAGVRLINHKGENHGTITARLHEENFEITTLRIDVMTDGRHAEVEFTTDWEKDAGRRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KN 181 IN+++ G + DY G DL+N+ ++F+G + RI EDYLRILR+FRFF E + Sbjct: 155 INSMFLGFDGTLYDYFNGYEDLKNKKVRFVGLPNKRIQEDYLRILRYFRFFGKIAENPDD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D D L A KGL +S ERIW E+ K+L + + + MY + I L ++ Sbjct: 215 HDPDTLKAIKGNAKGLAGISGERIWVELKKILVGNHVEHLVRLMYELDVAYYIGLPT-DV 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +L++L +V + + + L QD + L + + ++ + ++ F Sbjct: 274 NLEELDKVYKNTR--NLSASPITFLTSLFRDQDDVTKLDF--RLKISKQEKN--LALFLL 327 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + + D ++ ++ Y L +Q +L ++ +W P Sbjct: 328 KHRKDLIKAADSSEPLKPFQDFILDSRDPGTTDRIYELLKYQGEG---ALLKEMQNWSIP 384 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 LFP+TG D+ K GI GK++G ++ +++W S +Q+ +++L L++ Sbjct: 385 LFPVTGHDIRKMGISSGKEIGTVIQQLREQWKKSGYQMDKDELLCLIK 432 >gi|16124663|ref|NP_419227.1| poly A polymerase family protein [Caulobacter crescentus CB15] gi|13421569|gb|AAK22395.1| poly A polymerase family protein [Caulobacter crescentus CB15] gi|220962524|gb|ACL93880.1| poly(A) polymerase/tRNA-nucleotidyltransferase [Caulobacter crescentus NA1000] Length = 413 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 207/417 (49%), Gaps = 13/417 (3%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 I W + +++ L + VGG VR++LM V DIDIATT+ PD V+ Sbjct: 2 IGNAPWIALPETKAVIAALEARGYAGCARFVGGCVRNTLMGKPVDDIDIATTLTPDLVID 61 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + IPT + +GTI + + ++ITTLR D+ TDGR A V FT+DW D+ RRD Sbjct: 62 ALEQAGLRAIPTGVDHGTITAVSGGRPYEITTLRKDVSTDGRRAVVAFTQDWNQDAERRD 121 Query: 122 FTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 F NALYAD G+V D G G+ D + F+GD RI EDYLRILRFFRF A YG Sbjct: 122 FRFNALYADTDGRVYDPTGEGIRDAHEGRVVFVGDPMTRIREDYLRILRFFRFQAWYGRG 181 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D GL A K + ++ER E+ K+L A +P A M + I V+ Sbjct: 182 EPDQKGLAACKALKGMVSGRAAERTQKELMKMLAADDPRPAFRLMAATSVLSSILPSVKS 241 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 ++ + IE EQ+FE D LR LI D K +A++ LP +R L+ Sbjct: 242 LARFEALVGIETEQLFENDPD--LRLAALIPD-DPKVAEQLAERLRLPNNVRDRLVEAVG 298 Query: 301 CNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 N + P E ++ Y G + ++K+ A + T +L+ W Sbjct: 299 KNPRVVSWMSPREARRAVYGLGTRTFCDRIKLAWAGSGRDST---APQWRALLALAETWN 355 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P FPL+G++V+K G+P G VG ++ + WI+ F ED + +L A +Q Sbjct: 356 PPAFPLSGEEVMKAGVPKGPMVGEVMREIELWWIDQDFI---EDKFSAIERLKAVAQ 409 >gi|190892793|ref|YP_001979335.1| poly(A) polymerase [Rhizobium etli CIAT 652] gi|190698072|gb|ACE92157.1| poly(A) polymerase protein [Rhizobium etli CIAT 652] Length = 377 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 142/375 (37%), Positives = 215/375 (57%), Gaps = 6/375 (1%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT 100 M L V DIDIATT+ P+ V+ + K +PT + +GT+ ++ K F++TTLR+D+ T Sbjct: 1 MGLPVSDIDIATTLTPEIVIERAAAAGIKAVPTGLQHGTVTLVIDGKPFEVTTLRTDVET 60 Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 DGR+AKV F+ DWKAD+ RRD TINALYAD +G+V+D VGGL D+ R I+FIGDA RI Sbjct: 61 DGRHAKVAFSTDWKADAERRDLTINALYADARGEVVDLVGGLADIEARNIRFIGDAATRI 120 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED+LRILRFFRFFA+YG D++GL A A+ LK LS+ER+WSE+ KLL A +P Sbjct: 121 AEDHLRILRFFRFFAYYGSGRPDAEGLKACAAARSKLKTLSAERVWSELRKLLGAADPGR 180 Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 A++ M + EI + + +D + ++ E+ W D LLR ++ D + + Sbjct: 181 ALLWMRQVAVLTEILPETERWGIDAIPALVATEKALGWAPDPLLRLAAIVP-PDAARLEA 239 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 +A + L L ++ +S ++L Y G + +LK+ L + Sbjct: 240 LAARLKLSNAEAATLKAWAMAAPIDDEISSAAFERLLYRNGADGITTRLKLALGVARGKA 299 Query: 341 TH-----QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + + ++L + WKKP FP+ G DV+ GIP G +VG +L + +W+ Sbjct: 300 EGDLSEMARSARLGKLLDRAMTWKKPQFPVNGADVIAAGIPSGPRVGELLGSLENQWVEE 359 Query: 396 SFQLSQEDLHHLLRK 410 +F + +L L++ Sbjct: 360 NFASDRAELLARLQE 374 >gi|146339019|ref|YP_001204067.1| putative poly(A) polymerase [Bradyrhizobium sp. ORS278] gi|146191825|emb|CAL75830.1| putative poly(A) polymerase [Bradyrhizobium sp. ORS278] Length = 417 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 129/410 (31%), Positives = 201/410 (49%), Gaps = 6/410 (1%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 ++ W +L+LLN +++ +VGGAVR++L+ +++ DIDIATT LP V+R Sbjct: 6 VLSAPWLSSGPAARVLALLNCDGEEARVVGGAVRNALLGVAIGDIDIATTALPPEVIRRA 65 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 K +PT I +GTI ++ F++TTLR D T GR AKV F RDW D+ RRDFT Sbjct: 66 KAASIKSVPTGIDHGTITLVLDGHPFEVTTLREDTETFGRKAKVAFGRDWVGDAHRRDFT 125 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 INAL G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR + +G D Sbjct: 126 INALSVGADGVVHDHVGGLADIEARRVRFIGDPSQRIAEDYLRILRFFRIHSAFGHGEPD 185 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +G +A I + GL LS+ER+ E+ KLL + + A+ M +GG+ I V + Sbjct: 186 REGYLACIAGRGGLATLSAERVRMEMLKLLVTEGAVGAVTAMADGGLLTSILGGVAYVG- 244 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 + +I+ E+ + R L + + + + L L + + Sbjct: 245 -PFAAMIDIERELSLPPSPVRRLAAL-AVAVTEDARRLGARLKLSNAETKALDGMGHRWW 302 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 + ++L Y G+ V +L + A +D ++ + P Sbjct: 303 RFASADEARGRRLLYRLGETVYRDRLMLGWARSGC---RRDAQHWRELALLPQRFTPPKL 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 PL D + G+ G +G++L + W+ + F L + L + + A Sbjct: 360 PLKAADFIARGVAEGPLLGHVLTLAEDAWLAADFPLDEASLTAIADQAAA 409 >gi|148253774|ref|YP_001238359.1| putative poly(A) polymerase [Bradyrhizobium sp. BTAi1] gi|146405947|gb|ABQ34453.1| putative poly(A) polymerase [Bradyrhizobium sp. BTAi1] Length = 417 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 133/412 (32%), Positives = 202/412 (49%), Gaps = 6/412 (1%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V ++ W +L+LLN +++ +VGGAVR++L+ + + DIDIATT LP V+R Sbjct: 4 VRVLSAPWLSSGPAARVLALLNSDGEEARVVGGAVRNALLGIDIGDIDIATTALPAEVIR 63 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K +PT I +GT+ ++ F++TTLR D T GR AKV F RDW D+ RRD Sbjct: 64 RAKAASIKSVPTGIDHGTVTLVLEGHPFEVTTLREDTETFGRKAKVEFGRDWIGDAHRRD 123 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTINAL G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR + +G Sbjct: 124 FTINALSVGPDGVVHDHVGGLADIAARRVRFIGDPAQRIAEDYLRILRFFRIHSAFGHGV 183 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D DG +A I + GL LS+ER+ E+ KLL + + A+ M +GG+ I V Sbjct: 184 PDRDGYLACIAGRAGLATLSAERVRMEMLKLLVTEGAVGAVTAMTDGGLLTAILGGVA-- 241 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 L + +IE E+ ++ R L + + + + L L + Sbjct: 242 YLGPFAAMIEIERTLALPPSAVRRLAAL-AVAVTEDARRLGARLKLSNAETKALDGMGHR 300 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + T ++L Y G+ V +L + A + Q + + + P Sbjct: 301 WWRLATADEARARRLLYRLGETVYRDRLMLGWARAGRDHDAQRWRELALL---PQRFTPP 357 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 PL D + G+ G +G++L + W+ + F L + L + + A Sbjct: 358 KLPLKAADFIARGVAEGPLLGHVLTLAEDAWLAADFPLDEASLSAIADQAAA 409 >gi|327266138|ref|XP_003217863.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 499 Score = 339 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 122/388 (31%), Positives = 197/388 (50%), Gaps = 19/388 (4%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SISYGTIKIICRKK 87 I GGAVRD L + QD+D AT+ P ++ +F T ++I +GTI + Sbjct: 124 VRIAGGAVRDLLSGMKPQDVDFATSATPTQMKEMFQATGVRMINNRGERHGTITARLHDE 183 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 F+ITTLR DL+TDGR+A+V FT DW+ D+ RRD TIN+++ G + D+ G +DL+N Sbjct: 184 NFEITTLRIDLVTDGRHAEVEFTTDWEKDAERRDLTINSMFLGLDGTLYDFFNGYDDLKN 243 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAKKGLKILSSERI 205 + ++F+G A+ RI EDYLRILR+FRF+ EK D + L A KGL +S ERI Sbjct: 244 KKVRFVGQANQRIQEDYLRILRYFRFYGRIAEKPGDHEPKTLEAIKANAKGLAGISGERI 303 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 W E+ K+L + + I MY + I L V +L + V + Q K ++ Sbjct: 304 WMELKKILVGNHANHLIRLMYELDVANYIGLPV-NGNLQEFDTVCKNVQNLFPKPMTV-- 360 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 L+ D S L + + + ++ + FL+ + P ++ Sbjct: 361 LTSLLKVPDDISKLDL--RLKISKDEKSLGLFLLKHRRDLVKAIDTTEPLKPYQDFIIDS 418 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382 + + A +I L Y +L ++ W P FP++G D+ + GI GK++G Sbjct: 419 REVDATSRICELLKYQGEE--------GLLHEMQQWSVPTFPVSGHDIRRTGISSGKEIG 470 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRK 410 +L + +W S +++ +E+L ++K Sbjct: 471 VLLQELRDQWKKSGYRMEKEELLSYVKK 498 >gi|86358651|ref|YP_470543.1| poly(A) polymerase protein [Rhizobium etli CFN 42] gi|86282753|gb|ABC91816.1| poly(A) polymerase protein [Rhizobium etli CFN 42] Length = 377 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 139/375 (37%), Positives = 213/375 (56%), Gaps = 6/375 (1%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT 100 M L V DIDIATT+ P V+ + K +PT + +GT+ ++ K F++TTLR+D+ T Sbjct: 1 MGLPVSDIDIATTLTPQIVLERAAAAGLKAVPTGLQHGTVTLVVDGKPFEVTTLRTDIET 60 Query: 101 DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 DGR+AKV F+ DWKAD+ RRD TINALYAD G+V+D VGGL D+ R I+FIGDA RI Sbjct: 61 DGRHAKVAFSTDWKADAERRDLTINALYADADGEVVDLVGGLADIEKRNIRFIGDASTRI 120 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED+LRILRFFRFFA+YG D++GL A A+ +K LS+ER+WSE+ KLL A +P Sbjct: 121 AEDHLRILRFFRFFAYYGSGRPDAEGLKACAAARSKIKTLSAERVWSELRKLLGAADPGR 180 Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 A++ M + EI + + +D + ++ E+ W D LLR ++ + + + Sbjct: 181 ALLWMRQVAVLTEILPESERWGIDAIPSLVATEKALGWAPDPLLRLAAIVP-PEAARLEA 239 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 +A + L L ++ +S ++L Y G ++ +LK+ LA+ Sbjct: 240 LAARLKLSNAEAATLKAWATAAPVNDEISPAAFERLLYRNGTDGIMTRLKLALAVARGKA 299 Query: 341 TH-----QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + + +++ +WKKP FPL G DV+ G+ G +VG +L + +W+ Sbjct: 300 EGDLGEMARSARLCKLMDRAANWKKPQFPLNGGDVLAAGVASGPRVGELLAVLENQWVEE 359 Query: 396 SFQLSQEDLHHLLRK 410 +F + L L++ Sbjct: 360 NFTSDRTALLARLKE 374 >gi|254503107|ref|ZP_05115258.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Labrenzia alexandrii DFL-11] gi|222439178|gb|EEE45857.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Labrenzia alexandrii DFL-11] Length = 415 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 141/407 (34%), Positives = 221/407 (54%), Gaps = 4/407 (0%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + W + + S LN+ D + +VGGA+R++L+ V DIDIATT P VM+ Sbjct: 9 LAAANWLRSPGIQAVFSALNRDNDSARVVGGAIRNTLLGHPVPDIDIATTATPQDVMQRA 68 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + K I T I +GTI +I +++TTLR D+ T GR AKVVF RDWK D+LRRDFT Sbjct: 69 ADAGLKPIGTGIDHGTITVISDGFPYEVTTLREDVETYGRQAKVVFGRDWKKDALRRDFT 128 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +NALY D GK+ D +GGL D R ++FIGD R+ EDYLRILRFFR +A YG+ ++D Sbjct: 129 MNALYVDSLGKLYDPLGGLEDCLARRVRFIGDPDMRLREDYLRILRFFRIYAAYGDGDMD 188 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++GL A ++ + GL+ LS+ERI E+ +L+ A A+ MY+ G+++ + +I Sbjct: 189 AEGLGACLRQRDGLRHLSAERIGHEMRRLVSAPKAAVAVRMMYDCGLWEIATGGLAKI-- 246 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL-ISFFNCN 302 + + + + D + VL S ++ + +A + L R + I + Sbjct: 247 EDFECLRHLDALAPETQDPEVGLTVL-SGFVREDVDRVADRLRLSNAERKRMQICWEAYK 305 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +++ +P++K L Y +G + I L + A D + + + P+ Sbjct: 306 TFRQSDQMPDLKTLLYTHGRQGAIDGLLAYWAAFEAQKRLGDQPDFEDAVLKLKSVEVPV 365 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 FPL G D++ G PG +VG +L ++ W + F LS++DL L Sbjct: 366 FPLKGADMIALGHRPGPQVGKVLKTLEKIWCENGFALSKQDLLARLE 412 >gi|75676806|ref|YP_319227.1| polynucleotide adenylyltransferase region [Nitrobacter winogradskyi Nb-255] gi|74421676|gb|ABA05875.1| polynucleotide adenylyltransferase region [Nitrobacter winogradskyi Nb-255] Length = 418 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 143/411 (34%), Positives = 210/411 (51%), Gaps = 6/411 (1%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ W + +LSLL +++ +VGGAVR++LM L V +IDIATT P+ VMR Sbjct: 6 SLCDAGWLKSGPAVRVLSLLGGNGEEARVVGGAVRNALMGLPVVEIDIATTAPPEEVMRR 65 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + R + IPT + +GT+ ++ K ++TTLR D+ T GR A+V F RDW D+ RRDF Sbjct: 66 AAAARIRSIPTGVEHGTVTLVVEGKPVEVTTLREDVETFGRKARVAFGRDWARDAQRRDF 125 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TIN L D G V D+VGGL+D+ R ++FIGD RI EDYLRILRFFR A YG Sbjct: 126 TINGLSVDSGGTVHDHVGGLDDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAYGAGEP 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D DG +A I+ + GL LS+ER+ +EI KLL A + A V M +GG+ +F V Sbjct: 186 DRDGYLACIRGRAGLATLSAERLRAEILKLLLADGAVEAAVAMEDGGLLLAVFGGVAYRG 245 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L+ ++ AE E D + R L + + +A++ L L S + Sbjct: 246 --PLAAMMAAESALELAPDPIRRLAAL-AVSVTEDARRLAQRLRLSNAEAKQLDSMGHRW 302 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + ++ ++ Y G +L + D L V + W+ P Sbjct: 303 WRLGSMDEATARRRLYRLGATRFRDRLMQAWSKAGLGA---DPAPWLNVATLPRRWQPPA 359 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 FPL +D + GI G +G++L + W+ F L L + + +A Sbjct: 360 FPLKAEDFIVRGIAEGPALGHVLTLAEDAWLAEDFPLDSARLSAIADQTVA 410 >gi|299134641|ref|ZP_07027833.1| Polynucleotide adenylyltransferase region [Afipia sp. 1NLS2] gi|298590451|gb|EFI50654.1| Polynucleotide adenylyltransferase region [Afipia sp. 1NLS2] Length = 422 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 130/411 (31%), Positives = 209/411 (50%), Gaps = 6/411 (1%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + W LSLLN +++ IVGGAVR++L+NL V +ID+ATT LP+ V+R Sbjct: 9 TATIMAAWLTSGPAARALSLLNANGEEARIVGGAVRNALLNLPVGEIDVATTALPEEVVR 68 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 R K +PT + +GT+ ++ ++TTLR D+ T GR AKV F RDW D+ RRD Sbjct: 69 RARAARIKCVPTGLEHGTVTLVIEGTPIEVTTLREDIETFGRKAKVAFGRDWVRDAERRD 128 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTIN L G V D+VGGL D+ R ++FIGD RI ED+LRILRFFR A YG+ Sbjct: 129 FTINGLSLSADGIVHDHVGGLADIEARRVRFIGDPARRISEDFLRILRFFRIHAAYGQGE 188 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + A I A+ GL LS+ER+ E+ KL+ AK +A++ M +GG+ I V Sbjct: 189 PDRAAMEACIAARDGLASLSAERLRMEMLKLVVAKGAADALIEMEDGGLLGRITAGVSYH 248 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + ++EAE++ + D++ R L + + ++ + L L S + Sbjct: 249 G--PFANMVEAERMLGFTADAIRRLGAL-TVATPEDAKRLSVRLRLSNAETKRLDSMGHR 305 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + ++ Y G ++ + A + ++ + W P Sbjct: 306 WWRMREMDEEIARRRVYRLGPDRYTERVMLAWARAGQDFA---APRWRELATLTRRWSAP 362 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +FPL D + G+ G +G++L + W+ ++F L + + + + Sbjct: 363 VFPLKAADFIARGLKEGPALGHVLTLAEDAWLAANFPLDAASVAAIAEQTL 413 >gi|86748321|ref|YP_484817.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris HaA2] gi|86571349|gb|ABD05906.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris HaA2] Length = 418 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 130/409 (31%), Positives = 201/409 (49%), Gaps = 6/409 (1%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 W H +L+LLN +++ +VGGAVR++L+ L + D+DIATT LPD V+R Sbjct: 8 ADAPWLHAGPAAQVLALLNHDGEEARVVGGAVRNALLKLPIGDVDIATTALPDEVVRRAR 67 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT + +GT+ ++ F++TTLR D+ T GR AKV F RDW D+ RRDFTI Sbjct: 68 AAGIKAVPTGVEHGTVTLVLDGHGFEVTTLREDVETFGRKAKVAFGRDWLRDAQRRDFTI 127 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 N L G V DYVGGL+D+ R ++FIGD RI EDYLRILRFFR A YG Sbjct: 128 NGLSVSPDGVVHDYVGGLDDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGVGPPQR 187 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 G +A I+ + GL LS+ER+ E+ KL+ A L ++ M +GG+ + Sbjct: 188 AGTLACIRGRAGLATLSAERMRMEMLKLMVADGALASVEAMADGGLLLA--VLGGVTYPG 245 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 + +I AEQ D + R L + + ++++ L L S + + Sbjct: 246 PFAAMIGAEQALGLDPDPVRRLGAL-AVAVTEDAKRLSQRLRLSNAEAKRLDSMGHRWWR 304 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + ++ Y G+ ++ + A D +++ W+ P FP Sbjct: 305 LAGMDEATARRRLYRLGEPRFHDRMMLAWARAG---RQADPAPWRNLVALPQRWRPPGFP 361 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 L D + G G +G++L + W+ + F + + L + + A Sbjct: 362 LKAADFIARGFAAGPALGHVLTLAEDAWLAADFPVEEGRLQAIADQTAA 410 >gi|85714277|ref|ZP_01045265.1| polynucleotide adenylyltransferase region protein [Nitrobacter sp. Nb-311A] gi|85698724|gb|EAQ36593.1| polynucleotide adenylyltransferase region protein [Nitrobacter sp. Nb-311A] Length = 418 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 143/410 (34%), Positives = 211/410 (51%), Gaps = 6/410 (1%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + W + +L+LLN +++ +VGGAVR++LM L V +ID+ATT P+ VMR Sbjct: 7 LCDAGWLKSGPAVRVLALLNGNGEEARVVGGAVRNALMGLPVGEIDVATTAPPEEVMRRA 66 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + R K IPT I +GT+ ++ + F+ITTLR D+ T GR AKV F RDW D+ RRDFT Sbjct: 67 ASARIKSIPTGIEHGTVTLVVEGRPFEITTLREDVETFGRRAKVAFGRDWARDAERRDFT 126 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 IN L D G V D+VGGL+D+ + ++FIGD RI EDYLRILRFFR A YG D Sbjct: 127 INGLSVDSDGTVHDHVGGLDDIAAKRVRFIGDPDRRIAEDYLRILRFFRIHAAYGAGEPD 186 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +G +A I+ + GL LS+ER+ +E+ KLL A+ + A+V M +GG+ + V Sbjct: 187 RNGHLACIRGRAGLVTLSAERVRAEMLKLLVAEGAVEAVVAMEDGGLLLALLGGVSYRG- 245 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 L+ ++ AE+ E D + R L + + +A++ L L S + + Sbjct: 246 -PLAAMMAAERALELAPDPIRRLAAL-AVSVTEDARRIAQRLRLSNAEAKELDSMGHRWW 303 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 + ++ Y G +L + D L V S W+ P F Sbjct: 304 RLGGMDEATARRRLYRLGATRFRDRLMQAWSRAGLGA---DPAPWLNVASLPQRWQPPAF 360 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 PL D V GI G +G++L + W+ F L L + + +A Sbjct: 361 PLKAGDFVARGIAEGPALGHVLTIAEDAWLAEDFPLDSARLSAIADQTVA 410 >gi|147900819|ref|NP_001089848.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus laevis] gi|80477591|gb|AAI08538.1| MGC130991 protein [Xenopus laevis] Length = 419 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 127/403 (31%), Positives = 198/403 (49%), Gaps = 15/403 (3%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 L + ++ K + I GGAVRD L D+D ATT PD++ +F K + Sbjct: 25 LFTDGLKKLTNIFAKDRYELRIAGGAVRDLLSGKQPHDVDFATTATPDQMKDMFIKEGVR 84 Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I +GT+ ++ F+ITTLR DL TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 85 MINNKGEKHGTVTARINEQNFEITTLRVDLHTDGRHAEVEFTTDWETDAERRDLTINSMF 144 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--G 186 G + DY G DL+ R ++F+GD RI EDYLRILR+ RF+ E+ Sbjct: 145 LGFDGTLYDYFNGYEDLKKRCVRFVGDPSQRIQEDYLRILRYLRFYGRISERTSAHTSGT 204 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + GL+ +S ERIW E+ K+LE + + I +Y G+ + L ++ +L++ Sbjct: 205 LDAIRENASGLRGISGERIWVELKKILEGNHVNHLIQIIYELGVAPHVGLP-EDGNLEEF 263 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFFNCNFNQ 305 ++V E K +L L+S D L + K S + + FL+ + Sbjct: 264 ARVCEHSHRMSPKPMTL--LTALLSNMDHVQKLDLRLKISKEEKNLALFLLQQRKELTAE 321 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 +T P Y+ + A KI L Y ++ W P FP+ Sbjct: 322 RTDEAPLKPFKDYVVDSREPDAHRKICELLKYQGEEQ--------FFREMEAWTLPRFPV 373 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G D+ + GI GK +G IL ++ W S +Q S+E+L + + Sbjct: 374 SGHDLRRMGISSGKDIGRILQELREHWKESGYQASKEELLNRV 416 >gi|254293106|ref|YP_003059129.1| polynucleotide adenylyltransferase region [Hirschia baltica ATCC 49814] gi|254041637|gb|ACT58432.1| Polynucleotide adenylyltransferase region [Hirschia baltica ATCC 49814] Length = 428 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 215/414 (51%), Gaps = 10/414 (2%) Query: 4 IVQHKWFHDSDLINILSLLNK-GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 + W ++ LN D + VGG VR++L+ V DIDIAT PD V R Sbjct: 9 LPVQPWMQADGARRVMRALNAGAPDSARFVGGCVRNALLGQPVADIDIATKWEPDEVTRR 68 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 K V PT I +GT+ + + ++ITTLR D+ TDGR+A V FT DW D+ RRDF Sbjct: 69 LLKANVAVHPTGIEHGTVTAVANNQPYEITTLRRDVSTDGRHATVAFTTDWTEDAKRRDF 128 Query: 123 TINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 +NALY D G +ID G G++DLR + I FIGDA R+ EDYLRILRFFRF A YG Sbjct: 129 HVNALYCDLMGDLIDPTGRGISDLREQKIAFIGDADTRLKEDYLRILRFFRFNAWYGSGQ 188 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D +GL A ++ + GL+ +S ERIWSE+ K+L A++P + M G+ + + + I Sbjct: 189 LDVEGLSACLRHRAGLETISVERIWSELKKILAARDPRVVLEAMSQTGVLQFVLSE--AI 246 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFN 300 LD + ++ E D LR + L +D I + K+ + E + L + + Sbjct: 247 GLDLFNALVGLELEEHLAPDPYLRLLSLYP-KDIDVISADVKRLKMSNYEKKRLLATASD 305 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 K S ++ Y G V A+ ++ A+ H+ + + +++ Sbjct: 306 TTDFSKEFSAKAFRRAIYKTGKDVFKARARLAWAVRGREANHR---YWRVLTQSAEKYER 362 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P+FP++G+ ++ G+P GK VG +L +Q WI+ F L +LIA Sbjct: 363 PVFPISGEHIIAVGVPEGKPVGEVLQRAEQWWIDEDFPSDV-ALIARHMRLIAE 415 >gi|156397420|ref|XP_001637889.1| predicted protein [Nematostella vectensis] gi|156225005|gb|EDO45826.1| predicted protein [Nematostella vectensis] Length = 414 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 138/419 (32%), Positives = 209/419 (49%), Gaps = 18/419 (4%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + K H +L+ + S+ K + IVGGAVRD LM +DID+ T P++++ Sbjct: 7 LADTEGFKAIHTPELLRLSSVFTKHGYELRIVGGAVRDLLMGKLPKDIDLCTNATPEQMI 66 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 ++F + I T + +GT+ K F++TTLR D+ TDGR+AKV FT DW+ D+ RR Sbjct: 67 KMFKDEEIRCIETGLQHGTLTAHINKTDFEVTTLRIDVETDGRHAKVKFTNDWQLDAERR 126 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 D T NA+ D G + DY G DLR ++F+GDA RI EDYLRILR+FRF+ + Sbjct: 127 DLTFNAMSVDLTGNLYDYFNGEIDLRKGHVRFVGDARLRIKEDYLRILRYFRFYGKIATE 186 Query: 181 --NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 N D D L + +GL+I+S ERIW E++K+L + + + +Y+ GI I L Sbjct: 187 PDNHDPDTLAVIKELAEGLRIISVERIWLEVSKILIGNHAQHLLQMLYDLGIASNIGLPT 246 Query: 239 QEIS-LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 + S + + + + Q+F + +L L++ + I +A+ + L R L Sbjct: 247 YDASCMTEFHRAWKESQIFSLQPVTL--LCCLVNTACEAEI--LARHWKLSNAERN-LGK 301 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMI---AKLKIFLALHYNNLTHQDTCFILQVLSD 354 F + K P Y D +++ A+ K L H L H L Sbjct: 302 FITEHRLPKEHETP-----LKPYQDMLVVSPSAQSKETLRGHITELLHYQGRHELG--EA 354 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 I W P FP+TGD + G+ PG + G L KQ W S + ++EDL +I Sbjct: 355 IACWIIPSFPVTGDHLKSIGLKPGPEFGRTLSQLKQMWRESYYVATKEDLLEKAHHMIK 413 >gi|163745090|ref|ZP_02152450.1| polyA polymerase family protein, putative [Oceanibulbus indolifex HEL-45] gi|161381908|gb|EDQ06317.1| polyA polymerase family protein, putative [Oceanibulbus indolifex HEL-45] Length = 386 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 128/404 (31%), Positives = 190/404 (47%), Gaps = 26/404 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +W HD D + ++ G + VGG VRD+L+ L D+D++T P+ VM + Sbjct: 4 ADTRWLHDEDAQQVCRVVQDGGYRIYFVGGCVRDALLGLPDSDVDLSTDAPPETVMALAR 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GT+ ++ K F+ITT R D+ TDGR A V F+ D D+ RRDFT+ Sbjct: 64 AAGVKAVPTGIDHGTVTLVAGGKPFEITTFRRDVETDGRRAVVAFSSDIAEDARRRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G+V+D +GGL DL R ++FI +A RI EDYLR LR+FRF A YG + Sbjct: 124 NALYATPDGQVLDPLGGLPDLHARRLRFIENAEQRIREDYLRTLRYFRFMAWYGSPQVGP 183 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + D L A GL+ LS+ER+ E KLL A +P A+ M G + + Sbjct: 184 EPDALDAIASNLDGLETLSAERVGQEFRKLLRASDPAPALALMRQTGALPVLLPGSDD-- 241 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 +S ++ E D L+R L + + L + L Sbjct: 242 -RWISMLVHFEHALGLTPDWLVRLAAL-------GGEGLTDRLRLSKVEVKRLALLQEHG 293 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 F P + +L Y +G +V A + + + VL I + Sbjct: 294 FAG-----PPLSELAYRHGAEVAQAAALLRGCMAEQMPENA-------VLETISRTAQAR 341 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 FP++ D++ G ++G L +Q WI S F LS+ +L Sbjct: 342 FPVSAKDLMPKF--KGPELGCELARLEQLWIASGFTLSRAELLS 383 >gi|209886120|ref|YP_002289977.1| polynucleotide adenylyltransferase region [Oligotropha carboxidovorans OM5] gi|209874316|gb|ACI94112.1| polynucleotide adenylyltransferase region [Oligotropha carboxidovorans OM5] Length = 422 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 131/411 (31%), Positives = 209/411 (50%), Gaps = 6/411 (1%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +++ W +L+LLN +++ +VGGAVR++L+NL V +IDIATT LP+ V+R Sbjct: 9 AAVIAGAWLTSGPAARVLALLNTEGEEARVVGGAVRNALLNLPVGEIDIATTALPEEVVR 68 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 R K +PT + +GT+ ++ ++TTLR D+ T GR AKV F RDW D+ RRD Sbjct: 69 RARVARIKCVPTGLEHGTVTLVIEGTPVEVTTLREDIETFGRKAKVAFGRDWARDAERRD 128 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTIN L G V DYVGGL D+ R ++FIGD RI ED+LRILRFFR A YGE Sbjct: 129 FTINGLSLSTDGTVHDYVGGLPDIAARRVRFIGDPARRIGEDFLRILRFFRIHAAYGEGE 188 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D A I A+ GL +LS+ER+ E+ KL+ A+ +A+V M + G+ I V Sbjct: 189 PDQAARDACIAARDGLDLLSAERLRMEMLKLVVARGAADALVAMDDAGLLGRITAGVSYH 248 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + ++EAE++ + D + R L + + ++ + L L S + Sbjct: 249 G--PFAGMVEAERMLGFVADPIRRLGAL-TVATPEDAKRLSTRLRLSNAETKRLDSMGHR 305 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + ++ Y G ++ + A + + + + W P Sbjct: 306 WWRMRGMDEEVARRRVYRLGADRYTERVMLAWARSGQDFS---APRWRDLATLTRRWTAP 362 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +FPL D + G+ G +G++L + W+ ++F L L + + + Sbjct: 363 VFPLKAADFIARGLKEGPALGHVLTLAEDAWLAANFPLDAASLATIADQTL 413 >gi|167644663|ref|YP_001682326.1| polynucleotide adenylyltransferase region [Caulobacter sp. K31] gi|167347093|gb|ABZ69828.1| Polynucleotide adenylyltransferase region [Caulobacter sp. K31] Length = 417 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 210/414 (50%), Gaps = 13/414 (3%) Query: 7 HKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 W +++ L + VGG VR++LM + DIDIATT+ PD+V+ Sbjct: 9 APWMALPATQAVIAALEARGFPGCARFVGGCVRNTLMGKPIDDIDIATTLTPDQVIEALG 68 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + + IPT + +GT+ + + ++ITTLR D+ TDGR A V FT+DW D+ RRDF Sbjct: 69 EAGLRAIPTGVDHGTVTALSGGRPYEITTLRRDVETDGRRAVVSFTQDWDQDAERRDFRF 128 Query: 125 NALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY D QG++ D G G+ND R + F+GD RI EDYLRILRFFRF A YG+ D Sbjct: 129 NALYVDLQGRLYDPTGEGVNDAREGRVVFVGDPMTRIREDYLRILRFFRFHAWYGKGEAD 188 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 L A K ++ ++ER E+ KLL A++P ++ M + I V+ ++ Sbjct: 189 QKALAACKALKGMVEGRAAERTQKELLKLLAAEDPRPSLRLMAATSVLSSILPFVKSLAR 248 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 + IE EQ+FE D LR LI D K MA++ L ++ L+ + Sbjct: 249 FEGLMAIETEQLFE--NDPELRLAALIPD-DPKIAEQMAERLRLSNALKERLVEAVGKSP 305 Query: 304 NQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + P E ++ Y G K ++K+ A T T +L+ W P Sbjct: 306 RIVSWMSPRECRRAVYALGLKTFSDRVKLAWAGAGRTAT---TPQWRGLLALGESWSPPA 362 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 FPLTG+D++K G+P G VG ++ + WI+ F ED + +L A +Q Sbjct: 363 FPLTGEDILKAGVPKGPMVGEVMREVEIWWIDQDFI---EDKFSAIERLKAVAQ 413 >gi|92118713|ref|YP_578442.1| polynucleotide adenylyltransferase region [Nitrobacter hamburgensis X14] gi|91801607|gb|ABE63982.1| Polynucleotide adenylyltransferase region [Nitrobacter hamburgensis X14] Length = 418 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 144/411 (35%), Positives = 213/411 (51%), Gaps = 6/411 (1%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ + W + +L+LL +++ +VGGAVR++LM L V +IDIATT LP+ V+R Sbjct: 6 SLSEAGWLKSGPAVRVLALLGGNGEEARVVGGAVRNALMGLPVGEIDIATTALPEEVIRR 65 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + R K IPT I +GT+ ++ + F+ITTLR D+ T GR A+V F RDW D+ RRDF Sbjct: 66 AAAARIKSIPTGIEHGTVTLVVDGRPFEITTLREDVETFGRKARVAFGRDWARDAERRDF 125 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TIN L G V D+VGGL+D+ R ++FIGD RI EDYLRILRFFR A YG Sbjct: 126 TINGLSVGSDGTVHDHVGGLDDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAYGAGEP 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D G +A I+ + GL LS+ER+ +E+ KLL A+ + A+V M +GG+ I V Sbjct: 186 DRAGYLACIRGRAGLATLSAERLRAEMLKLLVAEGAVEALVAMEDGGLLLAILGGVAYRG 245 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L+ +I AE+ D + R L + + +A++ L L S + Sbjct: 246 --PLAAMIAAERALGLAPDPIRRLAAL-AVSVTEDARRVAQRLRLSNAEAKQLDSMGHRW 302 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + ++ ++ Y G +L A D L V + W+ P Sbjct: 303 WRLGSMDEATARRRLYRLGAPRFRDRLMQAWARAGLGA---DPGLWLNVATLPQRWQPPA 359 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 FPL +D V GI G +G++L + W+ + F L L + + +A Sbjct: 360 FPLKAEDFVGRGIAAGPALGHVLTIAEDAWLAADFPLDSAQLSAIADQTVA 410 >gi|316932733|ref|YP_004107715.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris DX-1] gi|315600447|gb|ADU42982.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris DX-1] Length = 418 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 137/416 (32%), Positives = 205/416 (49%), Gaps = 9/416 (2%) Query: 1 MVSIV---QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M + W H +L+LLN +++ +VGGAVR++L L + D+DIATT LPD Sbjct: 1 MTDVPVRSDAPWLHTGPAARVLALLNGDGEEARVVGGAVRNALFGLPIGDVDIATTALPD 60 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 V+R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+ Sbjct: 61 EVVRRAKAAGIKAVPTGIEHGTVTLVLEGHGFEITTLREDVETFGRKAKVAFGRDWARDA 120 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINAL G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A Y Sbjct: 121 QRRDFTINALSMSADGTVHDYVGGLADIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAY 180 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G + D D +A I+ + GL LS+ER+ E+ KL+ A ++V M +GG+ + Sbjct: 181 GAGSPDRDAYLACIRGRDGLSTLSAERLRMEMLKLMVAGGAEASVVAMADGGLLLA--VL 238 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 L + +I AE+ + D + R L + + +A++ L L S Sbjct: 239 GGVAYLGAFAAMIGAERALGLEADPVRRLGAL-AVAVTEDAKRLAQRLRLSNAEAKRLDS 297 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + + + ++ Y G+ ++ + A D +++ Sbjct: 298 MGHRWWRLAGMDEATARRRLYRLGEARFHDRMMLAWARAGRGA---DPAPWHALIALPER 354 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 W+ P FPL D + G G +G++L + W+ + F L L + + A Sbjct: 355 WQAPAFPLKAADFLARGFAAGPALGHVLTLAEDAWLAADFPLEPAALRTIADQTAA 410 >gi|73985053|ref|XP_533758.2| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1 isoform 2 [Canis familiaris] Length = 416 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 201/409 (49%), Gaps = 33/409 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDVDFATTATPAQMKDMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNKGEKHGTITARLHEENFEITTLRIDVVTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G+A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGNAKQRIQEDYLRILRYFRFYGKIIDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVG-------------------LP--TNS 253 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ ++V + F K +L L QD + L + + + +E + + F Sbjct: 254 SLEEFNKVSKNVDGFSPKPMTL--LASLFKVQDDVTKLDL--RLKISKEEKN--LGIFIV 307 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + Y D ++ ++ L +Q +L + W P Sbjct: 308 KNRKDLVKATDSSEPLKPYQDFIIDSRESDATTRVCELLKYQGEH---GLLEQMQQWCIP 364 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 365 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 413 >gi|90422439|ref|YP_530809.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisB18] gi|90104453|gb|ABD86490.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisB18] Length = 417 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 139/408 (34%), Positives = 208/408 (50%), Gaps = 7/408 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 W + +L+LLN ++ +VGGAVR+ L+ L DIDIATT LPD VMR + Sbjct: 9 DAPW-NSGAAARVLALLNGDGAEARVVGGAVRNLLIGLPTGDIDIATTALPDEVMRRAQQ 67 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 K +PT I +GT+ ++ + F+ITTLR D+ T GR AKV F DW D+ RRDFT+N Sbjct: 68 AGIKSVPTGIEHGTVTLVVDGEPFEITTLREDVETFGRKAKVAFGEDWAVDAQRRDFTMN 127 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 AL G + DYVGGL+D+ R ++FIGD RI EDYLRILRFFR A YGE D D Sbjct: 128 ALSVSLDGTLHDYVGGLDDVEARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGEGAPDRD 187 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 G +A I+ + GL LS+ER+ E+ KL+ A A+ M GG+ +F V Sbjct: 188 GSLACIRGRDGLASLSAERMRMEMLKLMVAPGACAAVAAMGEGGLLLRVFGGVAFHG--P 245 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + +I AE+ + D++ R L + + ++ L L S + + Sbjct: 246 FAAMIAAERRLDLAPDAIRRLGAL-GVAVTEDARRLTQRLRLSNVECKRLDSMGHRWWRL 304 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 + + K+ Y G ++ + A + D L +++ W+ P FPL Sbjct: 305 RGMDQATAKRRLYRLGQARYHDRMMLAWARAGQDA---DPTPWLDLVTLPQRWQAPAFPL 361 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 D + G+ G +G+I+ + W+ S F L + L+ + + +A Sbjct: 362 KAADFIARGVAQGPALGHIIALAEDAWLASDFALDEAALNGIADQTVA 409 >gi|295687827|ref|YP_003591520.1| Polynucleotide adenylyltransferase region [Caulobacter segnis ATCC 21756] gi|295429730|gb|ADG08902.1| Polynucleotide adenylyltransferase region [Caulobacter segnis ATCC 21756] Length = 416 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 143/419 (34%), Positives = 206/419 (49%), Gaps = 14/419 (3%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 VSI W S +++ L + VGG VR++LM V DIDIATT+ PD+ Sbjct: 4 VSIGAPPWMAASQTRAVIAALEAKGGVGCARFVGGCVRNTLMGKPVDDIDIATTLTPDQT 63 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 + + + +PT + +GT+ + + F++TTLR D+ TDGR A V FT DW D+ R Sbjct: 64 IEAIEQAGLRAVPTGVEHGTVTALSGGRPFEVTTLRRDVATDGRRAVVAFTHDWGEDAQR 123 Query: 120 RDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDF NALYAD +G V D VG G+ D R + F+GD RI EDYLRILRFFRF A YG Sbjct: 124 RDFRFNALYADAEGTVYDPVGQGVEDARAGRVVFVGDPMTRIREDYLRILRFFRFQAWYG 183 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 D++ L A K L ++ERI E+ K L A +P A M G+ I V Sbjct: 184 RLEPDAEALAACAALKDMLLGGTAERIQKELMKTLAADDPRPAFRLMAATGVLAAILPTV 243 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + ++ IE EQ+FE D +LR L D ++A++ L R ++ Sbjct: 244 ESLARFDALVAIETEQLFE--TDPVLRLAALTP--DDNGAKALAERLRLSNADRDRIVEA 299 Query: 299 FNCNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + P E ++ Y G ++K+ A T +L+ Sbjct: 300 KTPGPTIVSWMSPREARRAIYALGSSAFRDQVKLAWAGAERAST---ASQWRALLALAET 356 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 W P PLTG++++K G+P G VG +L + WI+ F ED ++ +L A +Q Sbjct: 357 WTPPTLPLTGEEIMKAGVPKGPMVGKVLREVELWWIDQDFI---EDKFSVIERLKAVAQ 412 >gi|317418942|emb|CBN80980.1| 'tRNA-nucleotidyltransferase 1, mitochondrial' [Dicentrarchus labrax] Length = 427 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 112/409 (27%), Positives = 205/409 (50%), Gaps = 13/409 (3%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + + + L + + K + + I GGAVRD L +D+D ATT P+ + R+F Sbjct: 28 TSEFQSLFNDGLNGLAEVFEKHQHELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKRMF 87 Query: 64 SKTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 ++I +GTI + F++TTLR D+ TDGR+A+V FT DW+ D+ RRD Sbjct: 88 QSAGIRMINNKGEKHGTITARLHNENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDL 147 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEK 180 TIN+++ G + DY G +DL+NR ++F+G A RI EDYLRILR+FRF+ Sbjct: 148 TINSMFLGLDGTLYDYFKGYDDLQNRKVRFVGSAEQRIQEDYLRILRYFRFYGRVALEPD 207 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + + + L A + +GL +S ERIW EI K++ + + + MY+ + + I + + Sbjct: 208 DHEPETLAAIRENGRGLAAISGERIWVEIKKMVVGNHAAHLLELMYSLELAQYIGIP-PD 266 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +++++ +V + + K ++ L + + M + + RE + ++ F Sbjct: 267 GNVEEMKRVWQNAKDHSPKPMTI--LAALFHC--PEEVEKMDLRLKVSREEKN--LALFL 320 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 F ++ + + D ++ + + L +Q ++L ++ W Sbjct: 321 VKFRRELRKSQDDPDSLKPFTDFIIDNRELDSQSKVCELLKYQGEE---KLLKELCRWST 377 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P FP+ G D+ + GI GK++G L + W S +Q+ +++L ++ Sbjct: 378 PRFPVNGHDLRRMGITSGKEIGATLQKLRDIWKTSRYQMDKDELLSYVK 426 >gi|49618903|gb|AAT68036.1| tRNA nucleotidyl transferase-like [Danio rerio] Length = 405 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 199/405 (49%), Gaps = 19/405 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 L+ + + K + + I GGAVRD L +D+D ATT P+ + +F + Sbjct: 11 LFTDGLVGLAEIFQKNQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQTAGVR 70 Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 71 MINNKGEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186 G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + + + Sbjct: 131 LGLDGTLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPET 190 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + +GL +S ERIW E+ K+L + + + +Y G+ + L + ++++ Sbjct: 191 LEAIRENARGLAGISGERIWVELKKMLVGNHAGHLLELVYELGLAQYTGLP-ADGDVEEM 249 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNF 303 QV + V K ++ L + + ++ ++ + RE + FL+ + Sbjct: 250 KQVWQRAHVSSPKPMTV--LAALFR--KQADVENLDQRLKVSREEKNLGLFLVKYRRDLV 305 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 ++ + + K+ L Y ++L ++ W P F Sbjct: 306 KGHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN--------KLLDELRRWSIPRF 357 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G D+ K G GK++G IL + W S +Q+S+++L L Sbjct: 358 PVSGHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDELLSTL 402 >gi|288958320|ref|YP_003448661.1| poly(A) polymerase [Azospirillum sp. B510] gi|288910628|dbj|BAI72117.1| poly(A) polymerase [Azospirillum sp. B510] Length = 430 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 119/411 (28%), Positives = 191/411 (46%), Gaps = 6/411 (1%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 W + + L G + VGG VRD+ + V+DIDIAT P+RVM + Sbjct: 21 QPWMTAPESRALFDALASGGADARFVGGCVRDAWLGRPVKDIDIATHAPPERVMELLEAE 80 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 +VIPT +++GT+ +C K ++ITTLR D+ + GR+A+V FT DW D+ RRD T+NA Sbjct: 81 GIRVIPTGLAHGTVTALCGGKPYEITTLRRDVESFGRHARVEFTDDWIEDAARRDLTMNA 140 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + G + D GGL DL ++F+G+A RI ED LR+LRFFRF AHYG + D++ Sbjct: 141 MSCTPDGDLFDPFGGLADLAAGRVRFVGEARRRIAEDVLRLLRFFRFHAHYGRGDPDAEA 200 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A L LS ER+ E+ +LL A M GI + + + D+L Sbjct: 201 LAACRDLAPRLPTLSGERVRGELLRLLTAPCAAAVWRLMMGQGIMVHLLPE--AMDTDRL 258 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 ++I E+ D + R + D+ A+ L R L++ Sbjct: 259 ERLITVERDLGETPDPIRRLATTLDG-DRPGAQKAAEALRLSNHERDRLLALVEPPVALA 317 Query: 307 TLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 + +++ Y GD + L + A ++ + + L+ P+ Sbjct: 318 PCEERKSLRQALYRVGDAGLYGDLLLIAAARHDG--PLELMALRGALAVAGDLPGLRLPI 375 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G D+++ +P G VG L + WI F+ +++ + R + + Sbjct: 376 AGRDLLELDLPRGPAVGAALKRVEAWWIAEDFRPTRDACLEMARAVAGQAS 426 >gi|166158076|ref|NP_001107446.1| hypothetical protein LOC100135294 [Xenopus (Silurana) tropicalis] gi|156230028|gb|AAI52184.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Danio rerio] gi|163915741|gb|AAI57591.1| LOC100135294 protein [Xenopus (Silurana) tropicalis] Length = 405 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 199/405 (49%), Gaps = 19/405 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 L+ + + K + + I GGAVRD L +D+D ATT P+ + +F + Sbjct: 11 LFTDGLVGLAEIFQKSQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQTAGVR 70 Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 71 MINNKGEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186 G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + + + Sbjct: 131 LGLDGTLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPET 190 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + +GL +S ERIW E+ K+L + + + +Y G+ + L + ++++ Sbjct: 191 LEAIRENARGLAGISGERIWVELKKMLVGNHAGHLLELVYELGLAQYTGLP-ADGDVEEM 249 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNF 303 QV + V K ++ L + + ++ ++ + RE + FL+ + Sbjct: 250 KQVWQRAHVSSPKPMTV--LAALFR--KQADVENLDQRLKVSREEKNLGLFLVKYRRDLI 305 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 ++ + + K+ L Y ++L ++ W P F Sbjct: 306 KGHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN--------KLLDELRRWSIPRF 357 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G D+ K G GK++G IL + W S +Q+S+++L L Sbjct: 358 PVSGHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDELLSTL 402 >gi|39934263|ref|NP_946539.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris CGA009] gi|39648111|emb|CAE26631.1| possible poly(A) polymerase [Rhodopseudomonas palustris CGA009] Length = 418 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 137/413 (33%), Positives = 204/413 (49%), Gaps = 6/413 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M W H +L+LLN +++ +VGGAVR++L+ + D+DIATT LPD V+ Sbjct: 4 MPVRSDAPWLHTGPAARVLALLNGDGEEARVVGGAVRNALLGEPIGDVDIATTALPDEVI 63 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW+ D+ RR Sbjct: 64 RRAKAGGIKAVPTGIEHGTVTLVVEGHGFEITTLREDVETFGRKAKVAFGRDWERDAQRR 123 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINAL G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A YG Sbjct: 124 DFTINALSMSADGTVHDYVGGLVDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGAG 183 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D D +A I+ + GL LS+ER E+ KL+ A ++V M +GG+ + Sbjct: 184 EPDRDAYLACIRGRGGLAALSAERQRMEMLKLMIADGAEASVVAMADGGLLLA--VLGGV 241 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 L + +I AE+ + D + R L + + +A++ L L S + Sbjct: 242 AYLGAFAAMIGAERALGLEADPVRRLGAL-AVAVTEDAKRLAQRLRLSNVEAKRLDSMGH 300 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + + ++ Y G+ ++ + A D Q+++ W+ Sbjct: 301 RWWRLAGMDEATARRRLYRLGESRFHDRMMLAWARAGRGA---DPAPWRQLIALPERWQA 357 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P FPL D + G G +G++L + W+ + F L L + + A Sbjct: 358 PTFPLKAADFLARGFAAGPALGHVLTLAEDAWLAADFPLDPAALRTIADQTAA 410 >gi|50344974|ref|NP_001002159.1| tRNA-nucleotidyltransferase 1, mitochondrial [Danio rerio] gi|47939337|gb|AAH71337.1| TRNA nucleotidyl transferase, CCA-adding, 1 [Danio rerio] Length = 405 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 198/405 (48%), Gaps = 19/405 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 L+ + + K + + I GGAVRD L +D+D ATT P+ + +F + Sbjct: 11 LFTDGLVGLAEIFQKNQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKTMFQTAGVR 70 Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 71 MINNKGEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186 G + DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + + + Sbjct: 131 LGLDGTLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPET 190 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + +GL +S ERIW E+ K+L + + + +Y G+ + L + ++++ Sbjct: 191 LEAIRENARGLAGISGERIWVELKKMLVGNHAGHLLELVYELGLAQYTGLP-ADGDVEEM 249 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNF 303 QV + V K ++ L + + + ++ + RE + FL+ + Sbjct: 250 KQVWQRAHVSSPKPMTV--LAALFR--KQADVEKLDQRLKVSREEKNLGLFLVKYRRDLI 305 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 ++ + + K+ L Y ++L ++ W P F Sbjct: 306 KGHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGEN--------KLLDELRRWSIPRF 357 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G D+ K G GK++G IL + W S +Q+S+++L L Sbjct: 358 PVSGHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDELLSTL 402 >gi|192289790|ref|YP_001990395.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris TIE-1] gi|192283539|gb|ACE99919.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris TIE-1] Length = 418 Score = 332 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 137/413 (33%), Positives = 203/413 (49%), Gaps = 6/413 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M W H +L+LLN +++ +VGGAVR++L+ + D+DIATT LPD V+ Sbjct: 4 MPVRSDAPWLHTGPAARVLALLNGDGEEARVVGGAVRNALLGEPIGDVDIATTALPDEVI 63 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW+ D+ RR Sbjct: 64 RRAKAGGIKAVPTGIEHGTVTLVVEGHGFEITTLREDVETFGRKAKVAFGRDWERDAQRR 123 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINAL G V DYVGGL D+ R ++FIGD RI EDYLRILRFFR A YG Sbjct: 124 DFTINALSMSADGTVHDYVGGLVDIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGAG 183 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D D +A I+ + GL LS+ER E+ KL+ A ++V M +GG+ + Sbjct: 184 EPDRDAYLACIRGRGGLAALSAERQRMEMLKLMIAGGAEASVVAMADGGLLLA--VLGGV 241 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 L + +I AE+ + D + R L + + +A + L L S + Sbjct: 242 AYLGAFAAMIGAERALGLEADPVRRLGAL-AVAVTEDAKRLALRLRLSNVEAKRLDSMGH 300 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + + ++ Y G+ ++ + A D Q+++ W+ Sbjct: 301 RWWRLAGMDEATARRRLYRLGEARFHDRMMLAWARAGRGA---DPAPWRQLIALPQRWQA 357 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P FPL D + G G +G++L + W+ + F L L + + A Sbjct: 358 PTFPLKAADFLARGFAAGPALGHVLTLAEDAWLAADFPLDPAALRTIADQTAA 410 >gi|157423165|gb|AAI53772.1| LOC398421 protein [Xenopus laevis] Length = 419 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 129/403 (32%), Positives = 202/403 (50%), Gaps = 15/403 (3%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 L + +L K + I GGAVRD L D+D ATT P+++ +F K + Sbjct: 25 LFTDGLKTLANLFAKDRYELRIAGGAVRDLLSGKQPHDVDFATTATPEQMKDMFLKDGVR 84 Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I ++GT+ + F+ITTLR DL TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 85 LINNKGETHGTVTARINDQNFEITTLRVDLHTDGRHAEVEFTTDWEIDAERRDLTINSMF 144 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--G 186 G + DY G DL+NR ++F+GD RI EDYLRILR+ RF+ E++ Sbjct: 145 LGFDGTLYDYFNGYEDLKNRCVRFVGDPSQRIQEDYLRILRYLRFYGRISERSGAHTSGT 204 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + GL+ +S ERIW E+ K+LE + + I +Y+ G+ + L ++ +L++ Sbjct: 205 LDAVRENASGLRGISGERIWVELKKILEGNHVNHLIQIIYDLGVAPHVGLP-EDGNLEEF 263 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFFNCNFNQ 305 ++V E + K +L L S D L + K S + + FL+ + Sbjct: 264 ARVCERSRRMSPKPMTL--LTALFSNTDHVQKLDLRLKISKEEKNLALFLLQQRRELTAE 321 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 +T + P Y+ + KI L Y ++ W P FP+ Sbjct: 322 RTDAAPLKPFKDYVVDSREPDTHRKICELLKYQGEEQ--------FFREMEGWTLPRFPV 373 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G D+ + GI GK++G IL K+ W S FQ S+E+L + + Sbjct: 374 SGHDLRRMGISSGKEIGRILQELKEHWKGSGFQTSKEELLNRV 416 >gi|194745490|ref|XP_001955221.1| GF18651 [Drosophila ananassae] gi|190628258|gb|EDV43782.1| GF18651 [Drosophila ananassae] Length = 487 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 131/416 (31%), Positives = 217/416 (52%), Gaps = 18/416 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + K +L +++SL K + + I GGAVRD LMN+ +DID+ATT P ++ Sbjct: 68 VDSPEFKSIFTPELESLVSLFKKYDYELRIAGGAVRDILMNMEPKDIDLATTATPSQMKE 127 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F K ++I +GTI K+ F++TTLR D+ TDGR+A+VV+T DW+ D+ R Sbjct: 128 MFEKEEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVVYTTDWQLDANR 187 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G V DY G +DL+ R + F+GDA RI EDYLRILR+FRF+ + Sbjct: 188 RDLTINSMFLGLDGTVYDYFYGYDDLQERRVVFVGDADIRIKEDYLRILRYFRFYGRIAK 247 Query: 180 --KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 K D LVA GL +S ERIW+E+ K++ + ++ M +F+ I L Sbjct: 248 DAKRHDEATLVAVKDNAAGLSRISGERIWTELQKIVVGNFGSDLLLEMNRCHLFEHIGLP 307 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 + +L++ ++ +A + FE +L +++ ++M + L R ++ Sbjct: 308 GKP-NLEEFDRLCKALEKFEKPHYPILYMSGMLN--SVNDAMAMHNRLKLSAYERD--LA 362 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 F +K + + + + + + + + L Y+N L + + Sbjct: 363 LFITQHREKVDTDYKSIRDYQKLCIQPNVNRDYVEQLLKYSN--------KLVLYQQLKS 414 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 W KP FP+ G + G+ GKKVG ++ K W +S F+ + EDL L+ +++A Sbjct: 415 WSKPNFPVNGHSLSSLGLK-GKKVGQVMNELKLHWADSDFKSTSEDLLKLVPEIVA 469 >gi|47227381|emb|CAF96930.1| unnamed protein product [Tetraodon nigroviridis] Length = 407 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 114/395 (28%), Positives = 201/395 (50%), Gaps = 13/395 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SIS 76 + L K + I GGAVRD L +D+D ATT P+ + R+F ++I T Sbjct: 22 LAELFVKHHHELRIAGGAVRDLLSGRRPEDVDFATTATPEEMKRMFQSAGVRMINTKGEK 81 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 +GTI + F++TTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ G + Sbjct: 82 HGTITARLHNENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMFLGLDGTLY 141 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH--YGEKNIDSDGLVASIKAK 194 DY G DL+NR ++F+G A RI EDYLRILR+FRF+ + D + L A + Sbjct: 142 DYFQGYEDLQNRKVRFVGSAVERIQEDYLRILRYFRFYGRVALEPDDHDPETLKAIRENG 201 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 GL +S ERIW E+ K++ + + + +Y+ + + + L + ++++ +V + Sbjct: 202 CGLASISGERIWVELKKMVVGDHAAHLLELIYSLELAQYMGLP-PDGDIEEMKRVWRNAK 260 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 K ++ L+ + + M + + RE + ++ F + ++ P+ Sbjct: 261 AHAPKPATM--LASLLH--SPEEVEKMDLRLKVSREEKN--LALFLVRYRRELQKSPDEP 314 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 Y D ++ ++ + L +Q ++L+ + W P FP++G D+ K G Sbjct: 315 DSLRPYTDFIIDSREADYQNKVCELLKYQGEP---KLLAQLSRWSIPRFPISGHDLRKMG 371 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 I GK++G L + W S +++ +E+L ++ Sbjct: 372 ITSGKEIGVALQQLRDVWKKSRYRMEKEELLSYVK 406 >gi|196005311|ref|XP_002112522.1| hypothetical protein TRIADDRAFT_25022 [Trichoplax adhaerens] gi|190584563|gb|EDV24632.1| hypothetical protein TRIADDRAFT_25022 [Trichoplax adhaerens] Length = 400 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 126/410 (30%), Positives = 214/410 (52%), Gaps = 19/410 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + +L ++ L + + +VGG VRD L++ +DID+AT PD+++ Sbjct: 5 VDTPNFRAIITDELKRVIQLFQENNYQIRLVGGVVRDVLLDKVAKDIDLATDATPDQMIE 64 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 I K K + T + +GTI +I K F+ITTLR D ITDGR+A+V FT DW+ D+ RRD Sbjct: 65 ILKKNEIKYVETGLQHGTITVIINKAIFEITTLRIDAITDGRHAQVQFTNDWRIDAERRD 124 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GE 179 TINA+ G + DY G DL NR I F+G+ RI EDYLRILR+FRF+ Sbjct: 125 LTINAMSLSIDGTLFDYFNGREDLINRRIIFVGNTRKRIQEDYLRILRYFRFYGRIAANA 184 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + D D L GL+ ++SERIW E++K+L + + MY+ G+ I L + Sbjct: 185 DSHDPDILQEIRHTAAGLEKIASERIWMEMSKILVGNFAPDLLRLMYDLGVASHINLP-K 243 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + ++++ + + + ++ + LL +V S ++A+ + L + FL+ F Sbjct: 244 DGNVEEFQAIWDRMRNYKPQPAVLLASLV----NSVSSAEALARTWKLSN-VERFLMKFI 298 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + + + L + DK +++ I ++YN + ++ DI +W Sbjct: 299 TGKRQNHYTILKQYQDLLF---DKETMSRDHIIQLMYYNGHSQ--------LVDDINNWV 347 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P FP+ G+D+ G PG + L K+ W++++++ ++E+L L++ Sbjct: 348 IPKFPIGGNDLKSLGHKPGPQFKRTLDMLKKHWMDTNYKTTKEELLMLIQ 397 >gi|21357337|ref|NP_649578.1| CG2100, isoform A [Drosophila melanogaster] gi|281360112|ref|NP_001163512.1| CG2100, isoform B [Drosophila melanogaster] gi|7296685|gb|AAF51964.1| CG2100, isoform A [Drosophila melanogaster] gi|16183624|gb|AAL13714.1| GM13341p [Drosophila melanogaster] gi|220944702|gb|ACL84894.1| CG2100-PA [synthetic construct] gi|220954638|gb|ACL89862.1| CG2100-PA [synthetic construct] gi|272476817|gb|ACZ94811.1| CG2100, isoform B [Drosophila melanogaster] Length = 477 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 131/419 (31%), Positives = 218/419 (52%), Gaps = 24/419 (5%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V+ + K +L ++++L K + + I GGAVRD LM + +DID+ATT PD++ + Sbjct: 63 VATPEFKSIFTPELNDLVALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPDQMKQ 122 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F K ++I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ R Sbjct: 123 MFEKEEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANR 182 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 RD TIN+++ G V DY G +DL+ R + F+G+A RI ED+LRILR+FRF+ Sbjct: 183 RDLTINSMFLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIAS 242 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 E N D L A + KGL +S ERIWSE+ K++ + M+ +F+ I L Sbjct: 243 EENNHDKATLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIGLP 302 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYF 294 +E LD+ ++ +A FE +L ++ + + M K+ L R++ F Sbjct: 303 -KEPYLDEFDRLCKALDQFEKPHQPILYLAGMLH--SVEDAMEMHKRLKLSAYERDLARF 359 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 + +Q T K Y + + +L L Y+ L++ + Sbjct: 360 ITQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQL-----LKYSG--------KLELYNQ 406 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + W KP FP+ G+ + + G+ G ++G ++ K W +S FQL+ +DL + ++ Sbjct: 407 LKSWVKPDFPIRGNALAQRGLN-GMRLGLVMDELKLLWADSDFQLTHDDLLKWIPNVLK 464 >gi|197106337|ref|YP_002131714.1| tRNA nucleotidyltransferase/poly(A) polymerase [Phenylobacterium zucineum HLK1] gi|196479757|gb|ACG79285.1| tRNA nucleotidyltransferase/poly(A) polymerase [Phenylobacterium zucineum HLK1] Length = 416 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 136/418 (32%), Positives = 213/418 (50%), Gaps = 13/418 (3%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 ++ Q W + + ++ L + VGG VR++L+ V D+DIAT + PD V Sbjct: 4 TLGQPAWMTAPEAVAVMDALEAAGGADCARFVGGCVRNTLIGAPVDDVDIATRLTPDEVT 63 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + + +PT I +GT+ + + ++ITTLR D+ TDGR A V FT DW D+ RR Sbjct: 64 AALQAAKIRPVPTGIDHGTVTAVANHRPYEITTLRRDVSTDGRRATVAFTDDWMEDADRR 123 Query: 121 DFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N+LYA + G + D G G+ D + I F+G+ R+ EDYLRILRFFRF+A YG+ Sbjct: 124 DFTLNSLYARRDGTIFDPTGHGVADAKAGRIVFMGEPAQRLAEDYLRILRFFRFYAWYGK 183 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D+ + A AK ++ L++ERI E+ KLL A +P A+ M G+ I Sbjct: 184 GEPDAAAVAACAAAKDNIQSLAAERISKELLKLLAADDPRAAVRLMDGAGVLPLILGTAP 243 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 ++ + IE+EQ+FE + ++LR L+ D+ + +A++ L R +++ Sbjct: 244 DLERFEGLVAIESEQLFETE--AVLRLAALLP-ADQLAAAKLAERLRLSNADRDRIVAAL 300 Query: 300 NCNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + K+ P EI++ Y G + K+ A + +++ W Sbjct: 301 ATSPALKSWMSPREIRRAVYREGQAAFRDRAKLAWARAPESAA---ASQWRGMIALAEGW 357 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P FPLTGDDV+K G P G VG +L + WI+ F + + KL A Q Sbjct: 358 SPPAFPLTGDDVMKAGAPKGPMVGQVLREVEDWWIDHDFLDDK---LSAIEKLKAVVQ 412 >gi|45360665|ref|NP_989006.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus (Silurana) tropicalis] gi|38174205|gb|AAH61356.1| tRNA nucleotidyl transferase, CCA-adding, 1 [Xenopus (Silurana) tropicalis] Length = 405 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 123/405 (30%), Positives = 199/405 (49%), Gaps = 19/405 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 L + ++ + I GGAVRD L D+D ATT PD++ +F K + Sbjct: 11 LFTDGLKTLANIFANERHELRIAGGAVRDLLSGKQPHDVDFATTATPDQMKDMFLKQGVR 70 Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I +GT+ + F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 71 LINNKGEKHGTVTARINDQNFEITTLRVDVQTDGRHAEVEFTTDWETDAERRDLTINSMF 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--G 186 G + DY G DL+N +KF+GD+ RI EDYLRILR+ RF+ +++ Sbjct: 131 LGFDGTLYDYFNGYEDLKNHCVKFVGDSSQRIQEDYLRILRYLRFYGRISKRSGAHTSGT 190 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + GL+ +S ERIW E+ K+LE + + + +Y G+ + L + +L++ Sbjct: 191 LDAIKENASGLRGISGERIWVELKKILEGNHVNHLMQIIYELGVAPHVGLP-KGGNLEEF 249 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNF 303 ++V E K +L L S D L + + + +E + FL+ Sbjct: 250 AKVCERSHRMSPKPMTL--LTALFSNTDHVQNLDL--RLKISKEEKNLALFLLQQRRELT 305 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 ++T + P Y+ + A KI L Y + ++ W P F Sbjct: 306 AERTDAAPLKPFKDYVVDSREPDAHKKISELLKYQGEEQ--------LFREMEGWTLPRF 357 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G D+ + GI GK +G IL ++ W S +Q S+E+L + + Sbjct: 358 PVSGHDLRRMGISSGKDIGRILQELREHWKESGYQASKEELLNRV 402 >gi|21740087|emb|CAD39059.1| hypothetical protein [Homo sapiens] gi|117646864|emb|CAL37547.1| hypothetical protein [synthetic construct] gi|119584291|gb|EAW63887.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_c [Homo sapiens] Length = 414 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 121/409 (29%), Positives = 198/409 (48%), Gaps = 33/409 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVG-------------------LP--ANA 253 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + F K +L L QD + L + + + +E + + F Sbjct: 254 SLEEFDKVSKNVDGFSPKPVTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 307 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 308 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 364 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 365 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 413 >gi|117645344|emb|CAL38138.1| hypothetical protein [synthetic construct] Length = 414 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 121/409 (29%), Positives = 198/409 (48%), Gaps = 33/409 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID ATT P ++ +F Sbjct: 35 PEFQSLFAEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVG-------------------LP--ANA 253 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + F K +L L QD + L + + + +E + + F Sbjct: 254 SLEEFDKVSKNVDGFSPKPVTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 307 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 308 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 364 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 365 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 413 >gi|91975779|ref|YP_568438.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisB5] gi|91682235|gb|ABE38537.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisB5] Length = 417 Score = 329 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 130/409 (31%), Positives = 203/409 (49%), Gaps = 6/409 (1%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 W H +L+LL+ +++ +VGGAVR++L+ L + D+DIATT LP+ V+R Sbjct: 7 ADAPWLHVGPAAQVLALLDGHGEEARVVGGAVRNALLKLPIGDVDIATTALPEEVVRRAR 66 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+ RRDFTI Sbjct: 67 AAGIKAVPTGIEHGTVTLVLDGHGFEITTLREDVETFGRKAKVAFGRDWVRDAQRRDFTI 126 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 N L G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR A YG + Sbjct: 127 NGLSVSADGVVHDHVGGLADIAARRVRFIGDPDQRIAEDYLRILRFFRIHAAYGVGAPER 186 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 DG +A I+ + GL LS+ER+ E+ KL+ A ++V M +GG+ + I Sbjct: 187 DGYLACIRGRGGLSTLSAERMRMEMLKLMVAGGAAESVVAMADGGLLLG--VLGGVIYPG 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 + ++EAE+ D + R L + + + ++ L L S + + Sbjct: 245 AFAAMVEAERALGLDADPVRRLGAL-AVAVTEDAKRLTQRLRLSNAESKRLDSMGHRWWR 303 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + ++ Y G+ ++ + A D +++ W+ P FP Sbjct: 304 LARMDEATARRRLYRLGEPRFHDRMMLAWARAGREA---DPAPWRDLIALPQRWRAPAFP 360 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 L D + G G +G++L + W+ + F + + L + + A Sbjct: 361 LKAADFIARGFAEGPALGHVLTLAEDAWLAADFPVDDQRLQAIADQTAA 409 >gi|153812524|ref|ZP_01965192.1| hypothetical protein RUMOBE_02923 [Ruminococcus obeum ATCC 29174] gi|149831449|gb|EDM86537.1| hypothetical protein RUMOBE_02923 [Ruminococcus obeum ATCC 29174] Length = 443 Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 189/440 (42%), Gaps = 48/440 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S+ IL +L + ++ +VGG VRDS++ + D DI T+ P +V +F +T + Sbjct: 7 SNAEKILHILEENGYEAYVVGGCVRDSILGRNPNDWDITTSASPQQVKELFQRT----VD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ K+ +++TT R D DGR+ K V+FT + D RRDFTINA+ Sbjct: 63 TGLQHGTVTVLMDKEGYEVTTYRVDGDYEDGRHPKQVMFTSSLEEDLKRRDFTINAMAYH 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D G+ D+ ++ ++ +GD R ED LRILR RF A G I+ Sbjct: 123 PERGLVDLFHGMEDMEHKIVRCVGDPMERFHEDALRILRAVRFSAQLG-FTIEEKTKAGI 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 LK +S+ERI +E+ KLL + +P + + Y GI +E + + + Sbjct: 182 QALAPNLKCVSAERIQTELVKLLVSPHP-DYLRVAYETGITREFLPEFDACMETEQNTPH 240 Query: 251 EAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILS 280 V E + D +LR +L+ + +K S Sbjct: 241 HCYTVGEHILHGLLLVRPDKVLRLTMLLHDIAKPVMRKTDENGRDHFKMHAPEGEKMAKS 300 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 + ++ + + + ++ + +++ G+ + L++ A Sbjct: 301 ILRRLKFDNDTISKVSRLIKYHDDRPMPEMRSVRRAVNRIGEDLFPMYLEVQEADMLAQS 360 Query: 341 THQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 ++ ++ + K + +TG D+++ G PG ++G +L + Sbjct: 361 EYRREEKSARLKGVAECYHKVVEEKQCVSLKTLAVTGRDLIQAGYKPGPELGEVLKEMLE 420 Query: 391 EWINSSFQLSQEDLHHLLRK 410 + ++E L + K Sbjct: 421 HVLEEPSDNTKEKLMEFINK 440 >gi|94498681|ref|ZP_01305232.1| Polynucleotide adenylyltransferase region [Sphingomonas sp. SKA58] gi|94421844|gb|EAT06894.1| Polynucleotide adenylyltransferase region [Sphingomonas sp. SKA58] Length = 403 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 135/400 (33%), Positives = 198/400 (49%), Gaps = 19/400 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 VS+ W H L +LS L E + VGGAVRD L+ L V D+DIAT++ P VM Sbjct: 3 VSLPDAPWRHRGGLSALLSALGAAEGTARYVGGAVRDGLLGLPVNDLDIATSLPPVTVME 62 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K +PT I +GT+ + +ITTLR D+ TDGR A + +T DW+ D+ RRD Sbjct: 63 RLQGAGIKTVPTGIEHGTVTAVLADGPVEITTLRRDVSTDGRRATIAYTDDWREDAARRD 122 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINALYAD G + DY GG+ DL R ++FIG+A RI ED+LRILR+FRF A YG+ Sbjct: 123 FTINALYADPLTGAISDYFGGIADLEARRLRFIGEADARIAEDHLRILRYFRFLARYGDN 182 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++D+ A + A L LS ERI E+ KL+ P A+ M GGI + + +V Sbjct: 183 DVDNSAYAACVAAANSLMALSRERIADELLKLMAVAAPGQALRLMIEGGILRPVLPEVAM 242 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +D++ +IE E + R L+ D + + L + R L+ Sbjct: 243 DGVDRVEALIEREAQAALPPSPVRRLAALLP-PDAAVADQVGARLKLSNKARKRLVLAL- 300 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + + L + G + I +L + D+ + +L +I W Sbjct: 301 ----GQDGVGERPRALAFRIGTEAAIDRLLL------------DSARPIDMLDQVIGWTP 344 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 P P++G ++ G+ PG V L +Q W++ F Sbjct: 345 PKLPISGGTLISRGLTPGPDVAKALRQVEQIWVDEDFPDD 384 >gi|114585223|ref|XP_001140831.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial isoform 2 [Pan troglodytes] Length = 414 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 198/409 (48%), Gaps = 33/409 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QDID A+T P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFASTATPTQMKEMFQ 94 Query: 65 KTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ +K + Sbjct: 155 INSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L Sbjct: 215 HDPETLEAIAENAKGLAGISGERIWVELKKILVG-------------------LP--ANA 253 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 SL++ +V + F K +L L QD + L + + + +E + + F Sbjct: 254 SLEEFDKVSKNVDGFSPKPMTL--LASLFKVQDDVTKLDL--RLKIAKEEKN--LGLFIV 307 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + Y D ++ ++ L +Q +L ++ W P Sbjct: 308 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEMQQWSIP 364 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 365 PFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 413 >gi|195568543|ref|XP_002102273.1| GD19587 [Drosophila simulans] gi|194198200|gb|EDX11776.1| GD19587 [Drosophila simulans] Length = 476 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 132/426 (30%), Positives = 221/426 (51%), Gaps = 28/426 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V+ + + +L ++L+L K + + I GGAVRD LM + +DID+ATT PD++ + Sbjct: 62 VATPEFQSIFTPELNDLLALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPDQMKQ 121 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F K ++I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ R Sbjct: 122 MFEKEEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANR 181 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 RD TIN+++ G V DY G +DL+ R + F+G+A RI ED+LRILR+FRF+ Sbjct: 182 RDLTINSMFLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIAS 241 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 E N D L A + KGL +S ERIWSE+ K++ + M+ +F+ I L Sbjct: 242 EENNHDKATLAAIKENAKGLARISGERIWSELQKIVAGNFGPALFLEMHCCNLFEYIGLP 301 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYF 294 +E +LD+ ++ +A F+ +L ++ + + M K+ L R++ F Sbjct: 302 -KEPNLDEFDRLCKALDQFDKPHHPILYLAGMLH--SVEDAMEMHKRLKLSAYERDLARF 358 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 + T K Y + + +L L Y+ L++ + Sbjct: 359 ITQEREKVGLHYTTLRDFQKLCLQKYIQRDFVEQL-----LKYSG--------KLELYNQ 405 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH----LLRK 410 + W KP FP+ G+ + ++G+ G ++G ++ K W +S FQL+ +DL +L K Sbjct: 406 LKSWVKPDFPIRGNALAQHGLN-GVRIGLVMDELKLLWADSDFQLTHDDLLKKIPNVLEK 464 Query: 411 LIASSQ 416 + +S Sbjct: 465 IPSSPS 470 >gi|83313257|ref|YP_423521.1| tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum magneticum AMB-1] gi|82948098|dbj|BAE52962.1| tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum magneticum AMB-1] Length = 435 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 116/415 (27%), Positives = 206/415 (49%), Gaps = 8/415 (1%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 W ++ +++ L + VGG VRD+L+ ++D+DIAT P+RV+ + Sbjct: 20 QDWMDAAETRAVVAALQAEGARVRFVGGCVRDALLKRPIKDVDIATPDPPERVLALLDDA 79 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 IPT I +GT+ + K +++ITTLR D+ + GR+A++ +T DW+AD+ RRDFT+NA Sbjct: 80 GIHAIPTGIDHGTVTAVIGKAHYEITTLRVDVESFGRHARIEYTDDWRADASRRDFTMNA 139 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSD 185 L AD +G V D G+ D+ ++F+G+ RI ED LR+LRFFRF AHYG +++ Sbjct: 140 LSADPEGNVYDPFDGIADMAAGRVRFVGEPEKRIEEDALRLLRFFRFHAHYGRGIAMETR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L A + LK LS ER+ E+ +LL A +P +++ M++ GI I + +E + Sbjct: 200 ALNACRRMADRLKGLSGERVAGELVRLLLADDPTPSLLVMHSHGILAHILPEAKEFGRLR 259 Query: 246 LSQVIEAEQVFEWK--IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 +E + + DS+ R L++ D+ L + ++ L + + Sbjct: 260 TLAWLERRGLARPEIRPDSMRRLAALLA-TDRAGALDLGERLKLSGVQAKRVAAMAAPRV 318 Query: 304 NQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIHWK 359 + + P ++ G + + A + D +L W+ Sbjct: 319 HVGFAMDGPATRRALRKVGGDEFRDLVMVAWAARRSTEARPDAAESRCWTALLDAARDWQ 378 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P+ G D+++ G+P G ++G++L + W + ++ + LR L+A+ Sbjct: 379 PVELPVKGRDLLELGVPHGPRIGSLLAAVEAWWEDLDYRPDRSQCLDRLRGLMAA 433 >gi|195107325|ref|XP_001998264.1| GI23728 [Drosophila mojavensis] gi|193914858|gb|EDW13725.1| GI23728 [Drosophila mojavensis] Length = 450 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 130/418 (31%), Positives = 210/418 (50%), Gaps = 28/418 (6%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +L ++++ K + + I GGAVRD LMN+ +DID ATT P+++ +F K + Sbjct: 45 IFTPELEALVAMFKKYDYELRIAGGAVRDILMNIKPKDIDFATTATPEQMKEMFGKEEVR 104 Query: 70 VIP-TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 +I +GTI I K+ F++TTLR D+ TDGR+A VVFT DW+ D+ RRD TIN++ Sbjct: 105 LINAKGEKHGTITPRIHNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANRRDLTINSM 164 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSD 185 + G V DY G DL+ R + F+GDA RI EDYLRILR+FRF+ E+ D Sbjct: 165 FLGFDGTVYDYFYGYEDLQQRRVVFVGDADVRIKEDYLRILRYFRFYGRIAERPDCHDKA 224 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L A GL +S ERIW+E+ K++ I+ M N G+ ++ L + +L++ Sbjct: 225 TLAAIKANAVGLARISGERIWAELQKIVVGNFNRELILEMNNCGLLQQCGLPIHP-NLEE 283 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCN 302 +V + F +L I L+ + + + ++ L R++ F+ Sbjct: 284 FERVCVDLKRFHEPHYPILYLIGLLH--SSEQAMKLHERLKLSAYERDLALFITQQRERV 341 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 ++ K Y + + +L L Y N L++ + + W+ P Sbjct: 342 NSEYVCLRDYQKLCLQPYAKRDYVEQL-----LKYAN--------KLELYAQLKEWQMPS 388 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH----HLLRKLIASSQ 416 P+ G+ + YG+ GK+VG +L + W +S F LS E L +L +L + ++ Sbjct: 389 LPINGNTLKPYGLA-GKQVGVVLNELRLLWADSDFTLSAEQLLEKMPAILEQLPSPNK 445 >gi|194898865|ref|XP_001978983.1| GG10877 [Drosophila erecta] gi|190650686|gb|EDV47941.1| GG10877 [Drosophila erecta] Length = 477 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 130/426 (30%), Positives = 224/426 (52%), Gaps = 28/426 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V+ + + +L +++L K + + I GGAVRD LM + +DID+ATT P+++ + Sbjct: 63 VATPEFQSIFTPELNELVALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPEQMKQ 122 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F K ++I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ R Sbjct: 123 MFEKEEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANR 182 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 RD TIN+++ G V DY G +DL++R + F+G+A RI ED+LRILR+FRF+ Sbjct: 183 RDLTINSMFLGFDGTVYDYFYGYDDLQDRRVVFVGEADIRIKEDFLRILRYFRFYGRIAS 242 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 E D+ L A + KGL +S ERIWSE+ K++ + ++ +F+ I L Sbjct: 243 EEGKHDNATLSAIKENGKGLARISGERIWSELQKIVVGNFGSALFLELHRCNLFEYIGLP 302 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYF 294 +E L++ ++ +A FE +L ++ ++ + M K+ L R++ F Sbjct: 303 -EEPYLNEFDRLCKALDQFEKPHHPILYLTGMLH--SVENAMEMHKRLKLSAYERDLARF 359 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 + +Q T K Y + + +L L Y+ L++ + Sbjct: 360 ITQEREKVDSQYTTLRDYQKLCLQKYIQRDFVEQL-----LKYSG--------KLELYNQ 406 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH----LLRK 410 + W KP FP+ G+ + ++G+ G ++G ++ K W +S FQL+ +DL +L K Sbjct: 407 LKSWVKPDFPIKGNALAQHGLN-GMRLGLVMDELKLLWADSDFQLTHDDLLKKIPNVLEK 465 Query: 411 LIASSQ 416 + +SS Sbjct: 466 IPSSSS 471 >gi|255525052|ref|ZP_05391998.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium carboxidivorans P7] gi|296187402|ref|ZP_06855797.1| uncharacterized domain HDIG containing protein [Clostridium carboxidivorans P7] gi|255511308|gb|EET87602.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium carboxidivorans P7] gi|296047924|gb|EFG87363.1| uncharacterized domain HDIG containing protein [Clostridium carboxidivorans P7] Length = 460 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 107/447 (23%), Positives = 189/447 (42%), Gaps = 47/447 (10%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 HK F D +I+ +L +S +VGG VRDSL+N +D D+ T LP++ + IF Sbjct: 3 DHKIFIPQDTKHIMKILKNKGYESYVVGGCVRDSLINREPKDWDLTTNALPEQTLEIFKT 62 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFT 123 ++VI T I +GT+ I+ +++TT R D D R+ V FT K D RRDFT Sbjct: 63 EGFRVIETGIKHGTVTILMNGNPYEVTTYRVDGEYLDNRHPDNVTFTTSLKEDLSRRDFT 122 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 IN++ ++ +IDY G++DL+++ I+ +G+A R ED LR+LR RF + K Sbjct: 123 INSMAYNEDKGLIDYFNGISDLKSKIIRCVGNADERFNEDALRMLRAVRFSSELEFKLDF 182 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 A K ++ +S ERI E K+L + P N ++ + + + I ++ + Sbjct: 183 EGTFSAIKKNCNLIRNISVERIREEFCKILISHKPSNGVLALKETNLLEYILPEIVPCTG 242 Query: 244 DQLSQVIEAEQVFEWKIDSL--------LRFIVLISWQDK-------------------- 275 V + +F + L +R L+ K Sbjct: 243 FNQHNVHHDKDIFYHTLSVLDNAPNNINIRLAALLHDIGKPKCFTMDDKNIGHFYGHNKV 302 Query: 276 --KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 + + + + + + ++ P + ++V I L+ Sbjct: 303 SAEIARKILVRLKFDNKTIDTVYLLIYEHMSKFDKIKP---YSIKKFMNRVKIENLESLF 359 Query: 334 ALHYNNLT-----HQDTCFILQVLSDIIHWKKPLFP-------LTGDDVVKYGIPPGKKV 381 L ++ ++D IL + K P + G D++ GI GK++ Sbjct: 360 ELQIADIKGLAEEYRDYSKILSLKDKCETIIKEKQPLNMKDLNINGSDLINLGIKQGKQI 419 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLL 408 G IL + ++ ++E L +L+ Sbjct: 420 GEILEALLDRVLQNTELNNKEKLLNLV 446 >gi|198453059|ref|XP_001359047.2| GA15240 [Drosophila pseudoobscura pseudoobscura] gi|198132197|gb|EAL28190.2| GA15240 [Drosophila pseudoobscura pseudoobscura] Length = 450 Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 127/420 (30%), Positives = 210/420 (50%), Gaps = 20/420 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + ++ +++SL K + + I GGAVRD +M + +DID ATT PD++ Sbjct: 33 VDTPEFHGIFTPEVDSLVSLFKKYDYEIRIAGGAVRDIIMGIKPKDIDFATTATPDQMKD 92 Query: 62 IFSKTRYKVIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F+K ++I +GTI + F++TTLR D+ T+GR+A VVFT DW+ D+ R Sbjct: 93 MFTKENVRMINSKGEKHGTITPRINGKENFEVTTLRIDVRTNGRHADVVFTTDWQLDANR 152 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G V DY G +DL+ R + F+GDA RI EDYLRILR+FRF+ + Sbjct: 153 RDLTINSMFLGFDGTVYDYFYGYDDLQQRRVVFVGDADIRINEDYLRILRYFRFYGRIAK 212 Query: 180 --KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++ D L A K +GL +S ERIWSE+ K++ ++ M+ +F+ L Sbjct: 213 DAESHDPSTLAAIKKNAEGLARISGERIWSELQKIIVGNYGNELVLEMHRCNLFQHCGLP 272 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLI 296 V+ +L++ + E +FE +L L+ ++ +L K S R++ F+ Sbjct: 273 VKP-NLNEFQILCETLDIFEKPHYPILYMTGLLHSVEEAMMLHERLKLSAFERDLALFIT 331 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 ++ T K Y + + +L L Y + + + + Sbjct: 332 QQRTRVDSEYTTLRDYQKLCLQPYAKRDYVEQL-----LKYT--------RKVDLYNQLK 378 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 W P FPL G+ + +G+ GK +G L + W +S FQL+ L + +++ Q Sbjct: 379 AWSNPSFPLNGNILKDHGLS-GKNIGTGLSLLRLMWADSDFQLTSGQLLEKIPQILEKLQ 437 >gi|307295583|ref|ZP_07575419.1| Polynucleotide adenylyltransferase region [Sphingobium chlorophenolicum L-1] gi|306878622|gb|EFN09842.1| Polynucleotide adenylyltransferase region [Sphingobium chlorophenolicum L-1] Length = 402 Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 131/414 (31%), Positives = 198/414 (47%), Gaps = 20/414 (4%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ W H L +L L + VGGAVRD L+ L V D+DIAT P VM Sbjct: 1 MTSLPDADWRHRPGLDALLKALGAEQGLVRFVGGAVRDGLLGLPVNDLDIATVTEPQGVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K +PT I +GTI + +ITTLR D+ TDGR A + +T DW+ D+ RR Sbjct: 61 DRLKAAGIKAVPTGIDHGTITAVIHGWPVEITTLRRDVSTDGRRATIAYTDDWREDAARR 120 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYAD +V D+ GG+ DL ++FIGDA RI ED+LRILR+FRF A +G Sbjct: 121 DFTINALYADPITHEVTDFFGGVADLNAHRVRFIGDADARIAEDHLRILRYFRFLARFGH 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D A A L LS ERI E+ KLL PL ++ M GGI + + ++ Sbjct: 181 DEPDPQAYAACRAAANSLMALSRERIADELLKLLALPRPLASLRLMVEGGILRPVIPEID 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 L +LS +I+ E + ++ R L+ D ++ + + L + R +++ Sbjct: 241 GNGLARLSTLIDREAASNTALSAVRRLSALLP-PDPRTADQVGARLKLSNKARKRMMTAL 299 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + Q + L + G + I ++ I D L ++ + W Sbjct: 300 EGSGTQAP-----PRTLAFRIGVEGAIDRILI------------DPSAPLDGVAMLTDWT 342 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P P++G ++ G+ PG V L ++ W+ F + + + + ++ Sbjct: 343 PPRLPISGGALIARGLQPGPDVARALAQVQEIWVAEGFP-DEARVAEIADQTVS 395 >gi|42520318|ref|NP_966233.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410056|gb|AAS14167.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 391 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 140/398 (35%), Positives = 211/398 (53%), Gaps = 21/398 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ + + ++ +VGG VRDS++ V DID+AT +LP++ ++ K IPT + + Sbjct: 10 IIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLKH 69 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GTI + ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + D Sbjct: 70 GTITAVLNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYD 129 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 Y GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L K + Sbjct: 130 YFGGIEDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILSVCKKHSHMI 189 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 + LS ERI EI KLLE +P + M + ++I +E+ + LS Sbjct: 190 QNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIP--KEVKCEILS------SPLL 241 Query: 258 WKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 D+L++ +L+ K LS+ +K L + + F N + LS E Sbjct: 242 LGTDALVKLALLLRATKKNDRLSLGEYVSKFLRLSN-KQKKKLLFLLSNDIKTELSEKEQ 300 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 KK L+G ++ +KI N+ +S + P FPL+GDD++ Sbjct: 301 KKYISLFGRELYCDLVKICGVESGENVDE--------YISFANTFNIPKFPLSGDDLISI 352 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G PGK +G L KQ W +SS+ L++E+L + L Sbjct: 353 GHQPGKSLGRNLELLKQHWEDSSYTLTKEELVLYAKNL 390 >gi|118591958|ref|ZP_01549353.1| poly(A) polymerase [Stappia aggregata IAM 12614] gi|118435601|gb|EAV42247.1| poly(A) polymerase [Stappia aggregata IAM 12614] Length = 414 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 130/410 (31%), Positives = 218/410 (53%), Gaps = 5/410 (1%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + Q W + + + + + D++ +VGGAVR++L+ V D+DIATT P+ VM+ Sbjct: 9 LQQADWLKSPGIQAVFAAIEQDGDEARVVGGAVRNTLLGHPVPDVDIATTASPEMVMKRA 68 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 K I T I +GTI ++ +++TTLR D+ T GR A+VVF R+W D+ RRDFT Sbjct: 69 RAAGLKPIGTGIDHGTITVVSSGYPYEVTTLREDVETFGRQARVVFGRNWTRDAERRDFT 128 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +NALY D+ G++ D +GGL+D NR ++FIGD RI EDYLRILRFFR +A YG ++D Sbjct: 129 LNALYVDRHGRLHDPLGGLDDCLNRHVRFIGDPDTRIREDYLRILRFFRIYAAYGAGDMD 188 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +DGL A ++ + GL+ LS+ERI E+ +LL A A+ + + G+++ + + Sbjct: 189 ADGLGACLRQRDGLRHLSAERIGHEMRRLLRAPLAATALKLLNDCGLWEIATGGLA--RI 246 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL-ISFFNCN 302 + + E D L +VL + ++ + + + L R + ++ Sbjct: 247 EDYLALRSLEGSASEVTDPELGLVVLTGFV-REDVERVCDRLRLSNAERDRMRTAWAAMR 305 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 ++ +PE + + Y +G + I L A F +L + P Sbjct: 306 CLRQADKLPEAEDMVYQFGRQGAIDGLLGRWAGLRAQGKDPGDAFA-GLLDRLREVPVPQ 364 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 FP+ G D++ G PG+ +G+ L + +W +S F L++++L ++I Sbjct: 365 FPIKGADLIAAGHAPGRALGDSLKALEADWRDSGFSLTRDELLVRAEQVI 414 >gi|84685765|ref|ZP_01013661.1| polyA polymerase family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665858|gb|EAQ12332.1| polyA polymerase family protein [Rhodobacterales bacterium HTCC2654] Length = 387 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 130/405 (32%), Positives = 200/405 (49%), Gaps = 26/405 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W +D ++ ++L ++ VGG VR++L+ V D+DI+T P+ V ++ Sbjct: 6 ITETWLYDPVAQSVCAMLTSAGYQAHFVGGCVRNALIGAPVTDLDISTNAHPETVSKLAR 65 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K + +PT I +GT+ ++ F++TT R D+ TDGR A V F + D+ RRDFT+ Sbjct: 66 KAGFHAVPTGIDHGTVTVVADGHPFEVTTWRKDVETDGRRAVVAFADRLEDDARRRDFTM 125 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 NALYA G++ID +GGL DL R ++FI DAH RI EDYLRILRFFRF+A YG+ + + Sbjct: 126 NALYAAPDGQIIDPLGGLQDLLARKVRFIDDAHDRIREDYLRILRFFRFYAWYGDADAGL 185 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A + +G+ LS ER+ SE+ KLL A +P ++ M G+ I D+ + Sbjct: 186 DPDALTAISELSEGIDTLSRERVGSEVVKLLAAPDPAPSVAAMAASGVLARIMPDLNPKA 245 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + EQ D++ R VL K + L L + Sbjct: 246 LPIL---VHFEQDRGVAPDAMRRLAVLGGCDHKDA-------LRLSNLDARRLDTLLEHR 295 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 S + L Y G V + + AL +T + + Sbjct: 296 G-----STEKPAALGYRLGADVARDAVLVNAALM-------ETPPPDDFIDACSAGSHAV 343 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 P+T +D++ G ++G L + EWI+S F+L++E L L Sbjct: 344 LPVTANDLMPRF--QGAELGARLKALETEWIDSGFKLTREQLLGL 386 >gi|225677338|ref|ZP_03788313.1| poly A polymerase family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590624|gb|EEH11876.1| poly A polymerase family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 390 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 137/398 (34%), Positives = 211/398 (53%), Gaps = 20/398 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ + + ++ +VGG VRDS++ V DID+AT +LP++ ++ K IPT + + Sbjct: 10 IIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLKH 69 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GTI + ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + D Sbjct: 70 GTITAVLNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYD 129 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 Y GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L K + Sbjct: 130 YFGGIEDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICAGDLSDEILSVCKKHSHMI 189 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 + LS ERI EI KLLE +P + M + ++I +E+ + LS Sbjct: 190 QNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIP--KEVKCEILS------SSLL 241 Query: 258 WKIDSLLRFIVLISWQDKKSI---LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 D+L++ +L+ + ++K L + + F N + LS E K Sbjct: 242 LGTDALVKLALLLRTTKNDRLSLGEYVSKFLRLSN-KQKKKLLFLLSNDIKTELSEKEQK 300 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 K L+G ++ +KI N+ + +S + P FPL+GDD++ G Sbjct: 301 KYISLFGRELYCDLIKICGVESGENID--------KYISFANTFNIPKFPLSGDDLISIG 352 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 PGK +G L KQ W +SS+ L++E+L + L+ Sbjct: 353 HQPGKSLGKNLELLKQHWEDSSYTLTKEELVLYAKSLL 390 >gi|253581048|ref|ZP_04858309.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847711|gb|EES75680.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 441 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 101/440 (22%), Positives = 185/440 (42%), Gaps = 48/440 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL +L K ++ +VGG VRDS++ S D DI T+ P++V +F ++ + Sbjct: 7 KNAETILHILEKAGYEAYVVGGCVRDSILGRSPDDWDITTSAKPEQVKALF----HRTVD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ K+ +++TT R D DGR+ +V FT K D RRDFTINA+ + Sbjct: 63 TGLQHGTVTVLMEKEGYEVTTYRVDGEYEDGRHPKEVTFTASLKEDLKRRDFTINAMAYN 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++D GGL D+ + I+ +GD R ED LRI+R RF A G I+ + A Sbjct: 123 PSSGLVDLFGGLEDIERKIIRCVGDPLERFTEDALRIMRAVRFSAQLG-FAIEEETRKAL 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 LK +S+ERI E+ KLL + +P + + Y GI E + + Sbjct: 182 KVLAPNLKHVSAERIQVELVKLLMSPHP-DYLRVAYEAGITAEFLPEFDACMTTSQNTPH 240 Query: 251 EAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILS 280 V E + D +LR +L+ +K Sbjct: 241 HCYTVGEHILHSLCHVRADKVLRITMLLHDIGKPVVRKTDENGRDHFKMHGIAGEKRAAQ 300 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 + ++ + + + ++ + +++ G+ + L++ A Sbjct: 301 ILRRLKFDNDTIRKVTRLVKWHDDRPDGTTKAVRRAVNRIGEDLFPYYLEVQQADMLAQS 360 Query: 341 THQDT----------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 ++ ++++ +TG D+++ G PG+++G L + Sbjct: 361 DYRRAEKQERLDKVKEAYETIINEHQCVSLKTLAVTGKDLIEAGYKPGREIGETLNRLLE 420 Query: 391 EWINSSFQLSQEDLHHLLRK 410 + + +E L LL + Sbjct: 421 VVLADPQKNQKEILLGLLDE 440 >gi|84500746|ref|ZP_00998995.1| polyA polymerase family protein [Oceanicola batsensis HTCC2597] gi|84391699|gb|EAQ04031.1| polyA polymerase family protein [Oceanicola batsensis HTCC2597] Length = 386 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 120/402 (29%), Positives = 192/402 (47%), Gaps = 26/402 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + + ++L ++ VGG VRD+L+ V DIDIAT P +VM + Sbjct: 3 IGGDWLDHPGTVAVCAMLTAAGYRALFVGGCVRDALLGRPVGDIDIATDARPMQVMDLAE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT +GT+ ++ ++TT R D+ TDGR+A V ++ D D+ RRDFT+ Sbjct: 63 AAGIKAVPTGFDHGTVTLVSHGLEHEVTTFRRDVETDGRHALVHYSDDPAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA +G+++D +GGL DLR R ++F+G+ RI+EDYLRILRFFRFFA YG+ + + Sbjct: 123 NALYATPEGEIVDPLGGLPDLRARRLRFVGEPAARIIEDYLRILRFFRFFAWYGDPSQGM 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + L A GL LS ER+ E+ KLL A +P A+ M G + + + Sbjct: 183 DPEALAAIAGHVDGLSRLSRERVGHEMRKLLMAPDPSFAVAAMRQAGALSAVLPGSDDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + EQ + D + R + + L R S + Sbjct: 243 LGPL---VHHEQALDVPPDPIRRLAAVTGDDPGPA-------LRLSRAE-----SRRHAT 287 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +L Y +G+ + L + AL + + + + + Sbjct: 288 LRDAVGGTEGAAELGYRFGEAAALDILLLRWALLEHPGDPRQ-------VEQVRRGAAAV 340 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FP+ +D++ G +G+ L ++ WI S F L+++ L Sbjct: 341 FPVRAEDLMPD--LSGAALGDRLKQLERRWIRSGFALTRDQL 380 >gi|312116357|ref|YP_004013953.1| polynucleotide adenylyltransferase region [Rhodomicrobium vannielii ATCC 17100] gi|311221486|gb|ADP72854.1| Polynucleotide adenylyltransferase region [Rhodomicrobium vannielii ATCC 17100] Length = 420 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 137/410 (33%), Positives = 215/410 (52%), Gaps = 7/410 (1%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V++ WF ++ + LN+ + VGGAVR++L+ V ++D ATT PD +R Sbjct: 7 VTVADAAWFRAPEVRAVFDCLNREGFEVRAVGGAVRNALLEEPVLEVDFATTAKPDDTLR 66 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + K +PT I +GTI ++ F++TTLR D+ TDGR A V F DW D+ RRD Sbjct: 67 LAAAAGIKTVPTGIDHGTITLVVDGVPFEVTTLRRDVDTDGRRATVAFGDDWAEDARRRD 126 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYAD G V D + GL DL R ++F+GDA RI EDYLRILRFFRF A Y + + Sbjct: 127 FTLNALYADATGAVHDPLDGLPDLLARRVRFVGDADTRIREDYLRILRFFRFSADYAKGD 186 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D+DGL A+I+ ++GLK LS+ER+ +E+ ++L +AI M G+ + + Sbjct: 187 FDADGLAAAIRERRGLKRLSAERVRAEMLRILVTVRAPDAIRIMDESGLLLIVLGGIARR 246 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN- 300 S + ++ E + D + R L S ++ +A K L + R L+ + Sbjct: 247 S--RFDRIAAIEAQLKLMPDPMYRLAAL-SIFVEEDAERLAGKLRLSNDERNDLMGLASV 303 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + + L+ +++ L Y G + + + I A + D W++ Sbjct: 304 APWFRAPLAKRDLETLLYRIGARTYLGSVLIGWAASGAPI---DDAAWRFAAELPREWQR 360 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P FP+ G D++ G PG +G L + ++ +I S F L ++ L L K Sbjct: 361 PKFPVNGADLLNEGWLPGPGLGAHLRYLEERFIASGFTLDRKTLLALEDK 410 >gi|331092511|ref|ZP_08341333.1| hypothetical protein HMPREF9477_01976 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400732|gb|EGG80335.1| hypothetical protein HMPREF9477_01976 [Lachnospiraceae bacterium 2_1_46FAA] Length = 444 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 113/445 (25%), Positives = 199/445 (44%), Gaps = 48/445 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K + I+ L ++ VGG VRDS++ +D DI T+ LP+ +F +T Sbjct: 2 KITLPEKVKKIIHTLKSHGYEAYAVGGCVRDSILGREPEDWDITTSALPEETKALFERT- 60 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTIN 125 T I +GTI ++ K+ F++TT R D D R+ K V FTR + D LRRDFTIN Sbjct: 61 ---FDTGIEHGTITVLMGKEGFEVTTYRIDGKYEDNRHPKQVTFTRCLREDLLRRDFTIN 117 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ +++ ++D GG+ DL+ I+ +G+A R ED LRILR RF A G +I+ + Sbjct: 118 AMAYNEEEGIVDIFGGMEDLKEGVIRCVGNAKERFGEDALRILRAVRFSAQLG-FSIEEE 176 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + L+ +S+ERI E+ K+L + NP I Y GI K I + E+ + Sbjct: 177 TKAGIVALAPTLQQISAERIQVELVKMLVSPNPER-IRLAYELGITKVILPEFDEMMNTE 235 Query: 246 LSQVIEAEQVFEWKI--------DSLLRFIVLISW----------------------QDK 275 V E I D +LR +L+ + + Sbjct: 236 QETPHHMYTVGEHTIKALTIIRADKILRLTMLLHDVGKPMMKTVDRDGVAHFKYHDVEGE 295 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 K + ++ K+ + + + + +++ L G+ + LK+ +A Sbjct: 296 KIVRNILKRLKFDNDTLRKVAKLVKYHDYRMPARTKNVRRAVNLIGEDLFPFYLKVRMAD 355 Query: 336 HYNNLTHQDTCFILQV------LSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNIL 385 +Q T + + +I + + +TG+D+++ G+ PGK++G +L Sbjct: 356 TLAQSEYQRTEKLANLDGIRDCFEEIQEKGQCVSLKTLAVTGNDLIQLGMKPGKEIGEML 415 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRK 410 Q +++ ++E L +++ Sbjct: 416 NTLLQLVLDNPEYNNEEMLKLYVKE 440 >gi|58584420|ref|YP_197993.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418736|gb|AAW70751.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 399 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 138/416 (33%), Positives = 214/416 (51%), Gaps = 21/416 (5%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +I + D I+ + K + +VGG VRDS++ V DID+AT +LP +V+ Sbjct: 1 MSTIRTTQMQVDHKTSLIIDAVEKFGGEVRLVGGCVRDSILQRKVHDIDLATNLLPSQVI 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K IPT + +GTI + ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RR Sbjct: 61 EALKFHNIKAIPTGLKHGTITAVLNQRSFEITTLRHDVKCDGRHAKVEFTDNWRADASRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFT NALYA++ G + DY GG DL+ R + FIG+A RI EDYLRILR FRF A Sbjct: 121 DFTFNALYANKYGHIYDYFGGTQDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICIG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ L K + LS ERI E+ KLLE P+ + M + ++I +E Sbjct: 181 DMSDKILNVCKKHAHKIYNLSGERIRDEMFKLLEYDAPVPTLKSMQKSDVLQKIIP--KE 238 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLPREIRYFLI 296 + + LS F + D+L++ +L+ +K LS+ +K L + + L+ Sbjct: 239 VKCEILS------SAFLFGTDALVKLALLLRTTEKNDRLSLGEYVSKFLRLSNKQKKKLL 292 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + N + L+ E +K L G ++ +K+ N+ +S Sbjct: 293 FLLSNNI-KTELTEKEQRKYISLLGKELYCDLVKVCGVESGANVDE--------YISLAQ 343 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 FPL+GDD++ G PGK +G L +Q W +SS+ L++++L + L+ Sbjct: 344 VLNIQKFPLSGDDLINIGYQPGKNLGRNLKLLRQHWEDSSYTLTKKELMLYAKSLL 399 >gi|295109530|emb|CBL23483.1| uncharacterized domain HDIG [Ruminococcus obeum A2-162] Length = 441 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 101/440 (22%), Positives = 187/440 (42%), Gaps = 48/440 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S+ IL +L + ++ +VGG VRDS++ + D DI T+ P++V +F ++ + Sbjct: 7 SNAEKILHILEENGYEAYVVGGCVRDSILGRAPDDWDITTSASPEQVKELF----HRTVD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ K+ +++TT R D DGR+ K V+FT + D RRDFTINA+ Sbjct: 63 TGLQHGTVTVLMDKEGYEVTTYRVDGDYEDGRHPKQVMFTSSLEEDLKRRDFTINAMAYH 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++D G+ D++ + I+ +GD R ED LRILR RF A G I+ + Sbjct: 123 PVRGLVDLFHGMEDMQAKIIRCVGDPMERFHEDALRILRAVRFSAQLG-FTIEKETKNGI 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 LK +S+ERI +E+ KLL + +P + + Y GI KE + + + Sbjct: 182 RALAPNLKCVSAERIQTELVKLLASPHP-DYLRVAYETGITKEFLPEFDRCMETEQNTPH 240 Query: 251 EAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILS 280 V E + D +LR +L+ + +K + Sbjct: 241 HCYTVGEHILHSMMLIRPDKVLRLTMLLHDIAKPVMRKTDESGRDHFKMHATEGEKMAKT 300 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 + ++ + + + ++ + ++ G+++ L++ A Sbjct: 301 ILRRLKFDNDTISKVTRLIRYHDDRPMPEMRSVRHAVNRIGEELFPLYLEVQKADMLAQS 360 Query: 341 THQDTCFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 ++ ++ L +TG D++ G PG ++G IL Sbjct: 361 EYRREEKAARLQGVTECYHRVLEQKQCVSLKTLAVTGRDLISAGYKPGPELGEILKEMLD 420 Query: 391 EWINSSFQLSQEDLHHLLRK 410 + +E L LL++ Sbjct: 421 HVLEYPQDNDREKLLALLKE 440 >gi|307944158|ref|ZP_07659499.1| tRNA-nucleotidyltransferase 1 [Roseibium sp. TrichSKD4] gi|307772504|gb|EFO31724.1| tRNA-nucleotidyltransferase 1 [Roseibium sp. TrichSKD4] Length = 416 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 129/409 (31%), Positives = 212/409 (51%), Gaps = 5/409 (1%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + W H + L + L K ++ VGGAVR+SL+++ V D+DIATT P+ V+ Sbjct: 8 IDLSGQDWLHANGLQRLFDALEKAGAEARAVGGAVRNSLVSVPVVDVDIATTARPEDVIA 67 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + K IPT + +GT+ ++ + +++TTLR D+ T GR AKVVF DW D+ RRD Sbjct: 68 AVNAAGLKPIPTGVDHGTVTVLSEGEAYEVTTLRRDVETFGRQAKVVFGSDWIEDAKRRD 127 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NA+YAD+ G + D +GG+ D ++FIG+ RI EDYLRILRFFR A YG+ Sbjct: 128 FTLNAIYADRAGTLFDPLGGVPDCLAGRVRFIGNPEGRIREDYLRILRFFRIHATYGKGK 187 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D +GL A + ++GL+ LSSERI +E+ +LL A + + M GI ++ L Q+ Sbjct: 188 LDPEGLAACARLQEGLQTLSSERIGAEMKRLLPASGGSSVVPEMAQKGILHQVLL--QDA 245 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 D ++ + I + LI + ++ +A++ L ++S Sbjct: 246 DTDVYCRLHGYAAIRNTPIPFTTYLVALI-GLSESTLRKVAERLRLSNRELDHMLSVAKA 304 Query: 302 NFNQKTLSIPEIKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-ILQVLSDIIHWK 359 Q T + P +L Y +G + + + H + + LS + + + Sbjct: 305 AETQSTSNPPIDPRLQLYHFGAVASLQAAFLSFSAHEHVSSADGLSDCQEAFLSALENEE 364 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P+FP+ G D++ G+ PG ++G L + WI + + +L L Sbjct: 365 LPVFPIQGKDLISAGMAPGPEIGAALKKLENIWIAGGLKQGRSELLKLA 413 >gi|115640822|ref|XP_787015.2| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1 [Strongylocentrotus purpuratus] gi|115929252|ref|XP_001177380.1| PREDICTED: similar to TRNA nucleotidyl transferase, CCA-adding, 1 [Strongylocentrotus purpuratus] Length = 411 Score = 322 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 125/417 (29%), Positives = 209/417 (50%), Gaps = 18/417 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + + +L + L K + + I GGAVRD L +S QD+D AT PD++ Sbjct: 3 IDSPEFRGLFTPELKQLAELFEKYQYELRIAGGAVRDLLTKVSPQDVDFATIATPDQMKE 62 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F+K ++I +GTI K+ F+ITTLR D +TDGR+A+V FT DW+ D+ R Sbjct: 63 MFTKEGIRMINAKGEKHGTITARINDKENFEITTLRIDRVTDGRHAEVEFTTDWRTDAER 122 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G + D+ G L + F+G+A RI EDYLRILR+FRF+ Sbjct: 123 RDLTINSMFLGLDGTLYDFFNGKEALERCHVAFVGNAATRIQEDYLRILRYFRFYGRIAR 182 Query: 180 KN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++ + L A + GL +S ERIW E+ K+L + I MY+ + + I L Sbjct: 183 ESNKHTPETLQAIRENGHGLAGISGERIWMEVRKILTGNFAADLIHCMYDLDLARHIGLP 242 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 E L +L +V + Q ++L + ++D+ +L+M ++ + E R + Sbjct: 243 -PEADLQELHKVYQRSQSLHPHPVTVLSAL----FKDENDVLTMEQRMRISAEERKTAL- 296 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + K P Y D V+ +K K + L ++ +L D Sbjct: 297 YVIAERGDKPHKNP-----LKPYQDIVVCSKEKNIIKYVSEVLKYRGESQMLV---DFRS 348 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 W FPL+G D++ G+P G+ +G ++ +Q W++S F+ ++E+L L++ + Sbjct: 349 WDVAKFPLSGKDLLAAGVPKGRGLGGVMETVRQWWMDSDFKATKEELLERLQETMQE 405 >gi|190570623|ref|YP_001974981.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019125|ref|ZP_03334932.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356895|emb|CAQ54272.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995234|gb|EEB55875.1| poly A polymerase family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 408 Score = 322 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 141/414 (34%), Positives = 212/414 (51%), Gaps = 22/414 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + I+ + K ++ +VGG VRDS++ + DID+AT +LP++ ++ K I Sbjct: 4 DHETSVIIEAIEKFGGEARLVGGCVRDSILQRDIHDIDLATNLLPNQAVKALKLRNIKTI 63 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 PT + +GTI I K+ F+ITTLR D+ DGR+AKV FT DW+AD+ RRDFT NALYAD+ Sbjct: 64 PTGLKHGTITAILNKRSFEITTLRHDVKCDGRHAKVEFTNDWQADASRRDFTFNALYADK 123 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G + DY GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L Sbjct: 124 YGHIYDYFGGIQDLKARKLNFIGNAEDRIKEDYLRILRAFRFHAKICIGDLSDEILDVCK 183 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-----DVQEISL--- 243 K ++ LS ERI EI KLLE +P + M + ++I ++ L Sbjct: 184 KHSHMIQNLSGERIREEIFKLLECNDPAPTLKSMQKSDVLQKIIPKEVKCEILSSPLLIN 243 Query: 244 ---DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL--SMAKKFSLPREIRYFLISF 298 + ID+L + +LI + + L ++K L + + + F Sbjct: 244 TKPPTKPSAYGHTPFLDPTIDALTKLALLIRTAEDRVSLGEEVSKFLRLSNKQKKK-LLF 302 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 N + LS E KK L+G ++ +KI N+ +S + Sbjct: 303 LLSNDIKTELSEKEQKKYISLFGKELYCDLMKICGIESGTNVDE--------YISFAHIF 354 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 P FPL+GDD++ G PGK +G L +Q W +SS+ L++E+L + I Sbjct: 355 NIPKFPLSGDDLIIIGHQPGKNLGRNLELLRQHWEDSSYTLTKEELLLYAKSFI 408 >gi|23016115|ref|ZP_00055875.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum magnetotacticum MS-1] Length = 435 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 112/413 (27%), Positives = 199/413 (48%), Gaps = 8/413 (1%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 W ++ +L+ L + VGG VRD+L+ ++DIDIAT P+RV+ + Sbjct: 20 QDWMDAAETRAVLAALQADGAQVRFVGGCVRDALLKRPIKDIDIATPDPPERVLALLDDA 79 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 IPT I +GT+ + K +++ITTLR D+ + GR+A++ +T DW+ D+ RRDFT+NA Sbjct: 80 GIHAIPTGIDHGTVTAVIGKAHYEITTLRVDVESFGRHARIQYTDDWRVDASRRDFTMNA 139 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSD 185 L AD +G V D G+ D+ ++F+G+ RI ED LR+LR+FRF AHYG +++ Sbjct: 140 LSADPEGNVYDPFDGIADMAAGRVRFVGEPEKRIEEDALRLLRYFRFHAHYGRGTAMEAR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L A + LK LS ER+ E+ +LL A +P +++ M++ GI + + +E + Sbjct: 200 ALHACRRMAGRLKNLSGERVAGELVRLLLADDPTPSLLVMHSRGILAHVLPEAKEFGRLR 259 Query: 246 LSQVIEAE--QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 +E E + D++ R LI+ D+ +++ ++ L + + Sbjct: 260 TLAWLERRGLARAEIRPDAMRRLAALIA-TDRNGAMALGERLKLSGVQAKRVAAMAAPRV 318 Query: 304 NQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC---FILQVLSDIIHWK 359 T+ ++ G + A + D + +L W Sbjct: 319 TVDFTMDAQAARRALRKVGSDEFRDLTLVAWAGRRSLEARPDAAESERWIALLDAARDWV 378 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 P+ G D+++ G+P G ++G +L + W ++ + L+ + Sbjct: 379 PVELPVKGRDLMERGVPHGPRIGGLLAALEDWWEERDYRPDRNQCLEKLKDFV 431 >gi|195389791|ref|XP_002053557.1| GJ23286 [Drosophila virilis] gi|194151643|gb|EDW67077.1| GJ23286 [Drosophila virilis] Length = 454 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 126/414 (30%), Positives = 207/414 (50%), Gaps = 24/414 (5%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +L +++L K + I GGAVRD LMN+ +DID ATT PD++ +F+K + Sbjct: 45 IFTPELKALVALFKKYNYELRIAGGAVRDILMNIKPKDIDFATTATPDQMKEMFTKEEVR 104 Query: 70 VIP-TSISYGTIKI-ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 +I +GTI I K+ F++TTLR D+ TDGR+A VVFT DW+ D+ RRD TIN++ Sbjct: 105 MINAKGEKHGTITPRIHNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANRRDLTINSM 164 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY--GEKNIDSD 185 + G V DY G +D++ R + F+GDA RI EDYLRILR+FRF+ ++ D Sbjct: 165 FLGFDGTVYDYFYGYDDVQQRRVVFVGDADVRIKEDYLRILRYFRFYGRISADAQSHDKP 224 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L A GL +S ERIW+E+ K++ L ++ M+N + ++ L Q ++ + Sbjct: 225 TLAAIKANAAGLSRISGERIWAELQKIVVGNFGLELMLEMHNCDLLEQCGLPTQP-NIAE 283 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCN 302 ++ + FE +L L+ + + + ++ L R++ F+ Sbjct: 284 FKRLCGDLKRFEQPHYPILYLTALLHT--VEQAMKLHERLKLSAYERDLALFITQQRQRV 341 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + K Y + + +L L Y N L++ + + W+ P Sbjct: 342 DSDYNTLRDYQKLCLQPYAKRDYVEQL-----LKYAN--------KLELYNQLKAWQTPN 388 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P+ G+ + YG+ GK++G +L + W +S F L+ E L L ++ Q Sbjct: 389 LPINGNTLKGYGLV-GKRMGLVLSELRLLWADSDFTLTSEQLLESLPAILERLQ 441 >gi|163732986|ref|ZP_02140430.1| polyA polymerase family protein, putative [Roseobacter litoralis Och 149] gi|161393521|gb|EDQ17846.1| polyA polymerase family protein, putative [Roseobacter litoralis Och 149] Length = 392 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 125/405 (30%), Positives = 189/405 (46%), Gaps = 26/405 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 W HD+D + + L+ VGG VRD+L+ ++ D+D+AT P+ VMR+ + Sbjct: 11 ADTAWLHDADAQAVCAALSSEGGAVYFVGGCVRDALLGIAGSDVDLATDQTPENVMRLAN 70 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +PT + +GT+ I+ F++TT RSD TDGRYA V F+ D + D+ RRDFT+ Sbjct: 71 AAGLRAVPTGLDHGTVTIVSGGTGFEVTTFRSDTSTDGRYAVVCFSTDIREDARRRDFTM 130 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA G+++D + G+ D NR ++FI D RI EDYLRILRFFRF A Y + Sbjct: 131 NALYAAPAGQLVDPLHGMQDCLNRRVRFIEDPQKRIREDYLRILRFFRFHAWYADPDAGF 190 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A + L LS+ERI +E+ KLL A +P ++ M G + + Sbjct: 191 DPDALDAIAQNTARLAQLSAERIGAEMMKLLRAPDPAPSVAVMRQTGCLGIVLPGSDDQF 250 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L V+ E D +LR L + S L R L Sbjct: 251 LGP---VVHLEAAMGHGPDPVLRLSALGGDTAEDS-------LRLSRAEARKLKQLQAFG 300 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 F +L+ ++ Y + + A + L +I Sbjct: 301 FGPMSLA-----EIAYRENADLARGAAILRAAFASQPVPA-------STLDEISKGADAK 348 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 FP+ D++ GK +G+ + +Q+WI S F L+++ L L Sbjct: 349 FPVKAADLMP--TYQGKALGDRVRLLEQQWIASGFSLTRDALLAL 391 >gi|170760612|ref|YP_001787688.1| polyA polymerase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407601|gb|ACA56012.1| polyA polymerase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 450 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 106/435 (24%), Positives = 188/435 (43%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P VM IF YK+IPT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVMNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R +V FT + K D RRD TINA+ + + ++ Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKTRL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +GD+ R ED LR+LR RF + +++ + + + Sbjct: 137 VDYFHGLEDLNNKIIRCVGDSKDRFNEDSLRMLRCIRFASQLN-FHMEESTKLNIRELSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E+ K+L + P+ I ++ + I +++ + + + V Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGIRNIVELNLVDYIIPELKACVGFEQHNIHHDKDV 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKS----------------------ILSMAKKF 285 + + + LR L+ K + K+ Sbjct: 256 YGHILSVVENVPNKLELRLSALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKDILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 +I Y + + + L P IKK G + ++ +A + Sbjct: 316 KFDNKIIYKVDKLVYNHMTRYNKLRTPSIKKFINKVGIDNLDDLFELQIADIKGSAKEYH 375 Query: 345 T--------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + ++LS+ + G D++K GI GK++G +L + + Sbjct: 376 SFNNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|115522969|ref|YP_779880.1| polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisA53] gi|115516916|gb|ABJ04900.1| Polynucleotide adenylyltransferase region [Rhodopseudomonas palustris BisA53] Length = 418 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 133/408 (32%), Positives = 205/408 (50%), Gaps = 6/408 (1%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 W L+LLN +++ ++GGAVR++L+ ++ D+DIATT PD V R Sbjct: 9 DAPWLRAGPAARALALLNGDGEEARVIGGAVRNALLGIATGDVDIATTARPDEVTRRAQV 68 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 R K +PT I +GT+ ++ F+ITTLR D+ T GR AKV F RDW D+ RRDFTIN Sbjct: 69 ARIKCVPTGIEHGTVTLVIEGTPFEITTLREDVETFGRKAKVEFGRDWVRDAQRRDFTIN 128 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 L G V D+VGGL D+ R ++FIGD RI EDYLRILRFFR A YG+ +D + Sbjct: 129 GLSVSADGTVHDHVGGLEDIAARRVRFIGDPDRRIAEDYLRILRFFRIHAAYGQGAVDRE 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 +A I+ + GL LS+ERI E+ KL+ + L A + M + G+ + V Sbjct: 189 AYLACIRGRDGLATLSAERIRMEMLKLMVTREALGAAMAMADAGLLLRVLGGVSYHG--P 246 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 L+ +I AE+ + D++ R L + ++++ L L S + + Sbjct: 247 LAAMIAAERALGLEPDAVRRLGAL-GVAVTEDARRLSQRLRLSNAETKRLDSMGHRWWRL 305 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 + K+ Y G ++ + +A + T Q+++ W+ P FPL Sbjct: 306 PGMDEATAKRRLYRLGAPRYHDRMMLAIARAGGDAT---AVPWRQLIALPQRWQAPAFPL 362 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 D + G+ G +G+I+ + W+ S F L L + + +A Sbjct: 363 KAADFIARGVAQGPALGHIIALAEDAWLASDFALDPPTLSAIADQTVA 410 >gi|316966728|gb|EFV51271.1| poly(A) polymerase [Trichinella spiralis] Length = 750 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 121/408 (29%), Positives = 207/408 (50%), Gaps = 21/408 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 L+ I L K + I GGAVRD L+N+ DID+ATT P+ + ++F + +V+ Sbjct: 48 PPLMEIKQLFEKKGYEIRIAGGAVRDLLLNIIPVDIDLATTARPEEMNQLFLENSIRVLN 107 Query: 73 TS-ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +GT+ +++ F+ITTLR D GR+A+V FT DW D+ RRD T+N+++ D Sbjct: 108 KGGEKHGTVTCRIQEQNFEITTLRVDKFCHGRHAEVEFTTDWFLDASRRDLTVNSMFMDF 167 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVA 189 G V DY GG++DL+ R I F+GD + RI EDYLRILR+FRF+ +K+ + D L A Sbjct: 168 DGTVYDYFGGVDDLKKRRILFVGDPNQRIQEDYLRILRYFRFYGRLSDKSDEHDLSTLSA 227 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 +GL +S ERIW E+ +++ + + I M++ GI+ I L + ++ ++V Sbjct: 228 IKHNAEGLSSISGERIWLELKRIVVGRYGHSVIATMFDCGIYPYIGLP-KNPPIENFAEV 286 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + F+ +++ ++ ++++ I + + L E R K ++ Sbjct: 287 FITAEAFKPLSITMISALL----ENEQQICDLNSRLKLSTEERVICEFIVGKRDEAKKIT 342 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKKPLF 363 + + K +++ +C +++ L I WK P F Sbjct: 343 DLQ-------HQTKYFKNVCYNAYTRSCTPDSYKRSCELMKYHGFGDALKIIESWKPPKF 395 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+TG + I PG + IL Q+W+NS FQ++ +L +++L Sbjct: 396 PVTGHMLAHLNIKPGPVMTVILTRLFQKWMNSEFQMTAGELIDAVKEL 443 >gi|313887921|ref|ZP_07821600.1| putative tRNA adenylyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846087|gb|EFR33469.1| putative tRNA adenylyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 440 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 100/438 (22%), Positives = 190/438 (43%), Gaps = 43/438 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +++ IL+ L + ++ IVGG+VRD LM + D DI T+ P+ + ++F YK + Sbjct: 3 KNVLFILNKLRENGFEAYIVGGSVRDKLMGIEPHDYDITTSARPEEIKKVF--QAYKTVL 60 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT+ I+ +++TT R D + R + V+F+++ D RRDFTINA+ D Sbjct: 61 IGEDFGTVGILLDNTLYEVTTFRIDGAYINNRKPEKVIFSKNLTEDLKRRDFTINAMAMD 120 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G + D G +D++N+ I+ +GD + RI ED LR++R RF + I+ + A Sbjct: 121 GDGNLYDPFNGQDDIKNKIIRAVGDPNERIREDALRMMRAIRFAGRFRFF-IEEELFDAI 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 LK ++ ERI+ E +K++ ++P + ++ M G+ IF +++ Sbjct: 180 SLNASLLKKIAPERIFDEFSKMITGESPSHYLLLMEETGMLDVIFPELKRTVGFVQFSPY 239 Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKSILS---------------------- 280 + +F+ K D LR L K LS Sbjct: 240 HDKTLFDHLICVMDNVKPDLSLRLAGLFHDISKVDTLSIGEDGRGHFYGHEVLGADKVEE 299 Query: 281 MAKKFSLPREIRYFL-ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 + K++ LP + + I + ++ +++ G ++ + +A Sbjct: 300 ILKRYRLPNKTIEKVKILILDHMKVHAEMTDKALRRQIKRVGRDNILDLYDLLIADCMCT 359 Query: 340 LTHQDTCFILQ-------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 +D FI+ +L + + + G+D+ G GK +G IL ++ Sbjct: 360 RADRDASFIINRKNRVKELLDEKEMKTEKFLEINGNDIKALGFSQGKIIGRILKDLEEMV 419 Query: 393 INSSFQLSQEDLHHLLRK 410 ++ + + L + K Sbjct: 420 LDDPEKNEKTYLIDYIDK 437 >gi|225630119|ref|YP_002726910.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia sp. wRi] gi|225592100|gb|ACN95119.1| tRNA nucleotidyltransferase/poly(A) polymerase [Wolbachia sp. wRi] Length = 390 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 138/397 (34%), Positives = 211/397 (53%), Gaps = 20/397 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ + + ++ +VGG VRDS++ V DID+AT +LP++ ++ K IPT +++ Sbjct: 10 IIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLNH 69 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GTI I ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + D Sbjct: 70 GTITAILNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYD 129 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 Y GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L K + Sbjct: 130 YFGGIEDLKVRRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCKKHSHMI 189 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 + LS ERI EI KLLE +P + M + ++I +E+ + LS Sbjct: 190 QNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIP--KEVKCEILS------SSLL 241 Query: 258 WKIDSLLRFIVLISWQDKKSI---LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 + D+L++ +L+ + ++K L + + F N + LS E K Sbjct: 242 FGTDALVKLALLLRTTKNDRLSLGEYVSKFLRLSN-KQKKKLLFLLSNDIKTELSEKEQK 300 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 K L+G ++ +KI N+ +S + P FPL+GDD++ G Sbjct: 301 KYISLFGRELYCDLVKICGVESGENVDE--------YISFANTFNIPKFPLSGDDLISIG 352 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 PGK +G L KQ W +SS+ L++E+L + L Sbjct: 353 HQPGKSLGRNLELLKQHWEDSSYTLTKEELVLYAKSL 389 >gi|330993897|ref|ZP_08317828.1| tRNA-nucleotidyltransferase 1 [Gluconacetobacter sp. SXCC-1] gi|329759028|gb|EGG75541.1| tRNA-nucleotidyltransferase 1 [Gluconacetobacter sp. SXCC-1] Length = 397 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 119/384 (30%), Positives = 190/384 (49%), Gaps = 14/384 (3%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + +VGGAVRD L V DID+AT PD V KV+PT +++GT+ + + Sbjct: 15 ARLVGGAVRDLLCGRGVADIDLATPHAPDVVTARLKDAGIKVVPTGLAHGTVTAVLDGRP 74 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 F+ITTLR D TDGR+A V +T DW+ D+ RRDFTINA+ D G V DY GG DL Sbjct: 75 FEITTLRRDEETDGRHATVAWTHDWREDAARRDFTINAMSCDSAGVVHDYFGGRADLAAG 134 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++F+G+A RI+ED LRILRFFRF A YG+ D++ + A + LS ERIWSE Sbjct: 135 RVRFVGEARTRIVEDALRILRFFRFQARYGQSTPDAEAMAAITALAGLIDRLSVERIWSE 194 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 + ++L + + + M G+ + I L L+++I D++LR Sbjct: 195 LRRILAGPHVIVTLEQMAGCGVLAHVLPPPWNIGL--LARLIAC----GAPEDAVLRLAA 248 Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 ++ + ++A+ L R L + + +I +L +G + ++ + Sbjct: 249 MLEG----DVQAVARHLRLSRADGAALAQARATPVPRPGMDKADIARLLADHGLRDLLWR 304 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + A + ++ KP+FPLTG D++ G PG +G +L Sbjct: 305 AWLGQAAAVG----APDPAWDALRGVLVATAKPVFPLTGRDLLAAGCVPGAAMGQVLAQV 360 Query: 389 KQEWINSSFQLSQEDLHHLLRKLI 412 ++ W+ + + +R ++ Sbjct: 361 RRWWLENGCTPTHAACQAHMRAVL 384 >gi|195502087|ref|XP_002098069.1| GE24143 [Drosophila yakuba] gi|194184170|gb|EDW97781.1| GE24143 [Drosophila yakuba] Length = 477 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 126/418 (30%), Positives = 219/418 (52%), Gaps = 24/418 (5%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ + + +L +++L K + + I GGAVRD LM ++ +DID+ATT P+++ + Sbjct: 63 IATPEFQSIFTPELNELVALFKKYDYELRIAGGAVRDILMGIAPKDIDLATTATPEQMKQ 122 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F K ++I +GTI K+ F++TTLR D+ TDGR+A+V++T DW+ D+ R Sbjct: 123 MFEKEEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANR 182 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG- 178 RD TIN+++ G V DY +DL+ R + F+G+A RI ED+LRILR+FRF+ Sbjct: 183 RDLTINSMFLGFDGTVYDYFYAYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIAS 242 Query: 179 -EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 E N D L A + KGL +S ERIWSE+ K++ + M+ +F+ I L Sbjct: 243 EESNHDKATLEAIKENAKGLTRISGERIWSELQKIVVGNFGPALFLQMHRCELFEYIGLP 302 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYF 294 +E L++ ++ +A FE +L ++ ++ + M K+ L R++ F Sbjct: 303 -KEPYLNEFDRLCKALDQFEKPHHPILYLTGMLH--SVENAMEMHKRLKLSAYERDLARF 359 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 + +Q T K Y + + +L L Y+ L++ + Sbjct: 360 ITQEREKVDSQYTTLRHYQKLCLQKYIQRDFVEQL-----LKYSG--------KLELYNQ 406 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + W KP FP+ G+ + ++G+ G ++G ++ K W +S FQL+ +DL + ++ Sbjct: 407 LKSWVKPDFPIRGNALAQHGLN-GVRLGLVMDELKLLWADSDFQLTHDDLLKKIPNVL 463 >gi|260429133|ref|ZP_05783110.1| tRNA-nucleotidyltransferase 1 [Citreicella sp. SE45] gi|260419756|gb|EEX13009.1| tRNA-nucleotidyltransferase 1 [Citreicella sp. SE45] Length = 382 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 128/407 (31%), Positives = 206/407 (50%), Gaps = 27/407 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ V W ++L++L G ++ +VGG VR++LMN++V D+DIAT P+RV+ Sbjct: 1 MTQVSGDWLSCDSTQHVLAMLEAGGHEAYVVGGCVRNALMNVAVGDVDIATNARPERVVL 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + K +PT I +GT+ ++ ++TT R+D+ TDGR A V + D D+ RRD Sbjct: 61 LAESAGLKAVPTGIEHGTVTVVADGVGHEVTTYRADVETDGRRAVVRYADDVAEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-- 179 FT+NALYAD +G+++D +GGL DL R ++FIGDA RI EDYLRILRFFRF A YG+ Sbjct: 121 FTMNALYADARGRMLDPLGGLPDLEARRVRFIGDAGERIREDYLRILRFFRFIAWYGDPA 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + +D++ L GL+ LS+ER+ E+ +LL A P AI M G+ ++ Sbjct: 181 EGVDAEALAGIAANLDGLQKLSAERVGHEMVRLLRAPEPGIAICVMAQSGVLDKVLPGAS 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 +++ L + EQV + + R L + L R + L + Sbjct: 241 ILAIQPL---VALEQVHGVTPEPMRRLAGLGYYDGAS--------LRLSRGQQKRLGLYQ 289 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + S I + + +G ++ + + A + V +I Sbjct: 290 SL-----LSSDEPIAETAWRHGAEIALDVAILRAASLGQPVAPF-------VQDEIAKGA 337 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 FP+ D++ G+ G ++G L ++ WI S F LS++DL Sbjct: 338 GATFPVKPRDLMP-GVQ-GPELGEALRRLERRWIASGFMLSRDDLLE 382 >gi|331270840|ref|YP_004397277.1| PolyA polymerase family protein [Clostridium botulinum BKT015925] gi|329127558|gb|AEB77501.1| PolyA polymerase family protein [Clostridium botulinum BKT015925] Length = 440 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 120/434 (27%), Positives = 203/434 (46%), Gaps = 47/434 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ IVGG VRDSL+ + D DI T+ LP++V+ IF YK+IPT + + Sbjct: 12 IIHKLQEFNYEAYIVGGCVRDSLLKKTPNDWDITTSALPNKVVDIFQNLGYKIIPTGLKH 71 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++++TT R D D R+ KV FTR+ K D RRDFTIN++ + + + Sbjct: 72 GTVTIVINNEHYEVTTYRIDGEYEDNRHPKKVEFTRNLKEDLSRRDFTINSMAYNDKDGL 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY NDL + +K +GD R ED LRILR +RF A G I+ + L A+++ K Sbjct: 132 VDYFNSKNDLESGIVKSVGDPMKRFSEDALRILRAYRFAAQLG-FVIEDETLSATMQVKD 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LK +S ERI EI+K+L A + + G+ + I ++ + + + + V Sbjct: 191 NLKSISIERIRDEIDKMLLAN--SSIFFELSKFGVLEVILPELYQCFNVEQNNPYHVKNV 248 Query: 256 FEW--------KIDSLLRFIVLISW--------QDKKSI--------------LSMAKKF 285 F + L+ +L+ D+K I + K+ Sbjct: 249 FNHIINATLNIEPKLHLKLTMLLHDICKPQCKTTDEKGIDHFYNHAELSSNKSKEILKRM 308 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNN 339 + + + + S I+KL L G+ LK+ A L Y + Sbjct: 309 KYDNNTIDKVSTLVKYHDREIG-SNKSIRKLLSLIGEDNFRDLLKVKEADIKAQNLKYYD 367 Query: 340 LTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 H I L+DII + + G D+++ G GK++G+IL ++ + + Sbjct: 368 ERHNKLIEIEHKLNDIISKNQCFSLKDLKVNGRDLIELGYT-GKEIGHILNDLLEKVLEN 426 Query: 396 SFQLSQEDLHHLLR 409 +++ L ++R Sbjct: 427 PDLNNKDTLIGMIR 440 >gi|158290773|ref|XP_312336.4| AGAP002600-PA [Anopheles gambiae str. PEST] gi|157018058|gb|EAA08067.4| AGAP002600-PA [Anopheles gambiae str. PEST] Length = 437 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 124/418 (29%), Positives = 207/418 (49%), Gaps = 16/418 (3%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + + +L ++++L + + + GGAVRD LMN++ +D+DIATT P + Sbjct: 25 IDSPEFRSIFTQELKDLIALFERYNFEIRVAGGAVRDILMNMNPKDVDIATTATPTEMKE 84 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 IF+K +++ +GTI ++ F+ITTLR D ITDGR+A+V+ T DW D+ R Sbjct: 85 IFTKENIRMVNMNGEKHGTITPRINDRENFEITTLRIDAITDGRHAEVIHTTDWLLDANR 144 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G + DY G DL+ R + F+GD RI EDYLRILR+FRF+ E Sbjct: 145 RDLTINSMFLGFDGTLYDYFYGYEDLQKRRVAFVGDPDMRIKEDYLRILRYFRFYGRIAE 204 Query: 180 KN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++ D + L K +GL +S ERIW E K+L + M N + + L Sbjct: 205 ESNRHDEETLRIITKNAEGLARISGERIWQEWKKILSGNFGIELTEAMINCQLAPHMGLP 264 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLI 296 ++ + +V + + F+ K+ + L++ + L+M KF++ RE+ YF+ Sbjct: 265 -DAPNVPEFLRVAKQVRSFDPKLQPITVLSALLNTPEDAVNLNMRLKFTVYERELCYFIT 323 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 L ++L V + K + L Y+ + ++ Sbjct: 324 QNREETATIDELLP--FQQLCLQTISSVKLKKEYVLELLKYHGKRE--------LYQQLL 373 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 W P FP+ G+ ++ G P G K+G +L K W N+ + ++QE L L ++ Sbjct: 374 DWPIPQFPIKGNVLIANGAPKGPKLGVVLDRLKIIWSNNQYNMTQEQLLEHLPAVLEE 431 >gi|254487550|ref|ZP_05100755.1| tRNA nucleotidyltransferase [Roseobacter sp. GAI101] gi|214044419|gb|EEB85057.1| tRNA nucleotidyltransferase [Roseobacter sp. GAI101] Length = 394 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 128/404 (31%), Positives = 195/404 (48%), Gaps = 26/404 (6%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 +W D+D + + G VGG VR++L+ L D+D++T LP+RVM + + Sbjct: 12 DTRWLADADAQAVCDAVQDGGHTIYFVGGCVRNALLGLPDSDVDMSTDALPERVMALAKR 71 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 K +PT + +GT+ ++ K F++TT R D+ TDGR A V F+ + D+ RRDFTIN Sbjct: 72 AGLKTVPTGVEHGTVTVVSGGKGFEVTTFRRDVQTDGRRAVVAFSNNIDDDARRRDFTIN 131 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNID 183 ALYAD +G+VID + GL DLR R ++FI DA RI EDYLR LR+FRF A Y + K D Sbjct: 132 ALYADAEGRVIDPLEGLPDLRARRVRFIEDAEARIREDYLRTLRYFRFHAWYADPAKGFD 191 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 D L A GL+ LS+ERI +E+ KLL A +P A+ M G+ I + Sbjct: 192 PDALSAIASNTAGLETLSAERIGAEMQKLLSAPDPAPALAGMRQTGVLNAILPGADD--- 248 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 +S ++ E + + + R L + L + L + F Sbjct: 249 RWISMLVHFEALLGMRAHWIWRLAALGGD-------DAVTRLRLSKADGRMLEQIRDAAF 301 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 TLS ++ Y +G + + + L +T + VL I + F Sbjct: 302 EGNTLS-----EIAYRHGIMIAQGAMLLRACLA-------ETPPDIAVLETIDAATQAKF 349 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 P+ D++ G +G L + WI S F +++ L + Sbjct: 350 PVAAKDLMPA--YAGPALGARLAQLEAAWIASDFSATRDTLLDM 391 >gi|160895413|ref|ZP_02076182.1| hypothetical protein CLOL250_02970 [Clostridium sp. L2-50] gi|156862915|gb|EDO56346.1| hypothetical protein CLOL250_02970 [Clostridium sp. L2-50] Length = 473 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 110/445 (24%), Positives = 183/445 (41%), Gaps = 50/445 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ L ++ IVGG VRDS++ D DI T P++V +F +T I Sbjct: 34 ENAKKVIETLEAAGYEAYIVGGCVRDSILGREPGDWDITTAARPEQVKALFRRT----ID 89 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ K+ +++TT R D +D R V FT + + D RRDFTINA+ Sbjct: 90 TGIKHGTVTVMFGKEAYEVTTYRVDGEYSDHRRPDSVEFTANLEEDLKRRDFTINAMAYS 149 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 VID GG++DL N+ IK +GD R ED LRILR RF + I+ D A Sbjct: 150 PSAGVIDLFGGMDDLDNKVIKAVGDPLARFDEDALRILRAIRFAGQL-DFTIERDTRKAM 208 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248 I + L+ +S+ERI E++KLL + +P ++ Y GI I + + + Sbjct: 209 ILRAQFLQDISAERIRVELDKLLTSAHPEK-LMEAYVTGITAYILPEFDRMMEQPQNNPY 267 Query: 249 ------VIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------------ILS 280 V E V + ++ R+ L+ K Sbjct: 268 HKYNVGVHSMEAVKVIEPTTVCRWAALLHDVGKPECHTVDENGIDHFYGHNEKGAEIARK 327 Query: 281 MAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + ++ E + + + L +K G +KI A Sbjct: 328 VLRRLRFDNETTDLVCKMVLWHDYGLGEMLKKTTFRKALSRMGADFFPYYIKIRRADMAA 387 Query: 339 NLTHQ------DTCFILQVLSDIIHWK----KPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 ++ + ++ +I K + G D++ G+ PGK++G+IL Sbjct: 388 QSDYKLEERRGSIEHLEKLYQEITDAKDCLTIKQLAINGKDLIALGVKPGKEIGDILQEL 447 Query: 389 KQEWINSSFQLSQEDLHHLLRKLIA 413 + + S ++E L + K I Sbjct: 448 LNQVLGSPELNNRETLLSMADKYIK 472 >gi|291521782|emb|CBK80075.1| tRNA nucleotidyltransferase/poly(A) polymerase [Coprococcus catus GD/7] Length = 470 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 103/445 (23%), Positives = 187/445 (42%), Gaps = 48/445 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL L++ ++ +VGG VRDSL+ +D DI T+ P++V +F+ T I Sbjct: 21 ENAAVILKGLSEAGYEAYVVGGCVRDSLLGREPKDWDITTSARPEQVKAVFAHT----ID 76 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ K+ +++TT R D D R+ +V FT D RRDFTINA+ + Sbjct: 77 TGIEHGTVTVMIGKEGYEVTTYRIDGEYEDSRHPKEVQFTSQLLEDLKRRDFTINAMAYN 136 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++D G+ DL + I+ +G R ED LRI+R RF A G ID A Sbjct: 137 PDRGIVDAFDGIGDLERKIIRCVGVPQERFDEDALRIMRAVRFSAQLG-FEIDGPTKEAI 195 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------VQEISLD 244 + + L+ +S+ERI E+ K+L + +P + + GI + + V + + + Sbjct: 196 KEKVQQLENISAERIQMELVKILVSDHP-EYMRLACDLGITAVVLPEYDRIRGVSQHTPN 254 Query: 245 QLSQVIEA--EQVFEWKIDSLLRFIVLISWQDKKSILSMA-------------------- 282 + V E + D +LR +L+ K + + Sbjct: 255 HIYDVEEHTLRAMMNIVPDKVLRLTMLMHDFGKPDVKKVVEGGREIFYKHPEVSAAYAEK 314 Query: 283 --KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN- 339 ++ + R ++ + + S +++ G + +K+ A Sbjct: 315 IMRRLKFDNDTRTKVVRLVKWHGLKYDASEVSVRRALNRVGQDIFEDFIKVQHADIEAKN 374 Query: 340 ---------LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 L + +V+++ + + G D+++ GI PG +G +L + Sbjct: 375 PAVIPGKLALLAEKEKTYHKVIAEGQCFTVRQLAIGGLDLIRAGIEPGPLLGAVLDKLTE 434 Query: 391 EWINSSFQLSQEDLHHLLRKLIASS 415 I+ ++E L L KL Sbjct: 435 AVIDDQRMNNKEKLLELAEKLKDDP 459 >gi|86136787|ref|ZP_01055365.1| polyA polymerase family protein [Roseobacter sp. MED193] gi|85826111|gb|EAQ46308.1| polyA polymerase family protein [Roseobacter sp. MED193] Length = 389 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 127/410 (30%), Positives = 200/410 (48%), Gaps = 23/410 (5%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +++ W D+ N+ S L ++ VGG VR++LM + V DIDIAT P V+ Sbjct: 1 MALAGETWIRDAATQNVCSALTAQGAEALFVGGCVRNALMGVPVSDIDIATDASPQEVLA 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + K IPT I +GT+ ++ + ++TT R D+ TDGR A V F++D D+ RRD Sbjct: 61 LAKSAGIKAIPTGIEHGTVTLVKDQIPHEVTTFRKDVATDGRRAVVAFSKDIAEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NA+YA G ++D +GG+ DL R ++FIG A +RI EDYLR LR+FRF A YG+K+ Sbjct: 121 FTMNAIYARPDGSIVDPLGGMADLAARRVRFIGTAENRIREDYLRTLRYFRFHAWYGDKD 180 Query: 182 --IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D + L A +GL LS ER+ SE+ KLL A +P AI M G+ +I Sbjct: 181 AGFDPEALAAIAANLEGLSQLSLERVTSEVLKLLAAPDPAPAIAAMRQIGVLNQILPGAD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + SL L + + +D + R L + + + L + L+ Sbjct: 241 DRSLAPLIHLQAHHPDRDISLDPVCRLAALGGSE-------LQENLRLSKAEARLLV--- 290 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + + + +L Y G + + + AL ++ + SD+ Sbjct: 291 --HLREAATGVILPAELSYRLGRDIALQASVLRSALLEEPVSP-------NLGSDLARGS 341 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + +FPL D++ G +G L + WI S F L++ +L L+ Sbjct: 342 EAVFPLKAADLMPD--LSGSALGAALKKLESAWIQSGFTLNRNELLQKLK 389 >gi|225573952|ref|ZP_03782597.1| hypothetical protein RUMHYD_02046 [Blautia hydrogenotrophica DSM 10507] gi|225038790|gb|EEG49036.1| hypothetical protein RUMHYD_02046 [Blautia hydrogenotrophica DSM 10507] Length = 447 Score = 319 bits (817), Expect = 8e-85, Method: Composition-based stats. Identities = 104/449 (23%), Positives = 190/449 (42%), Gaps = 48/449 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K + + IL +L+ ++ +VGG VRDS++ + D DI T+ P+ V ++F +T Sbjct: 2 KLWIPPKVSEILDILHSHGYEAYVVGGCVRDSILARTPDDWDITTSAKPEEVKKLFRRT- 60 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTIN 125 + T + +GT+ ++ +++TT R D D R+ +V FT + D RRDFTIN Sbjct: 61 ---VDTGLQHGTVTVLLGNDGYEVTTYRLDGEYEDSRHPKEVTFTSSLEEDLKRRDFTIN 117 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ +Q+ ++D GG+ DL+ + I+ +G+ R ED LRI+R RF A G ID Sbjct: 118 AMAYNQEEGLVDLFGGMRDLQGKVIRAVGEPKERFTEDALRIMRAVRFSAQLG-FTIDEK 176 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A + LK +S+ERI E+ K+L +K+P + + GI + I + + Sbjct: 177 TYEALAELSPNLKHISAERIQVELVKILTSKHP-EYLEAAWETGITRVILPEFDAMMETA 235 Query: 246 LSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKSIL------------------ 279 + V + D +LR +L+ K + Sbjct: 236 QNTPHHCYDVGRHALVSLMAVPADKVLRLTMLLHDVGKPVVRTTDEQGQDHFKGHEDVGE 295 Query: 280 ----SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 + K+ + + + + + Q I++ G+ + L++ LA Sbjct: 296 RMASEILKRLKMDNDTISKVCRLIHWHDYQPVAVEKGIRRAVNRVGEDIFPFLLQVQLAD 355 Query: 336 HYNNLTHQDTCFILQ----------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 + Q +L +TG D++ G+ PGK +G +L Sbjct: 356 TMAKSDFGREKRLEQITKTQQIYEGILEANQCLSLKSLAVTGKDLIAMGMQPGKGIGQML 415 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++ ++ +E L L ++ + S Sbjct: 416 DFLLEKVLDEPDYNKKEYLLSLAKRRLES 444 >gi|110677804|ref|YP_680811.1| polyA polymerase family protein, putative [Roseobacter denitrificans OCh 114] gi|109453920|gb|ABG30125.1| polyA polymerase family protein, putative [Roseobacter denitrificans OCh 114] Length = 392 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 124/405 (30%), Positives = 192/405 (47%), Gaps = 26/405 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 W HD+D + + L+ VGG VRD+L+ ++ D+D+AT P+ VMR+ Sbjct: 11 ADTAWLHDADALAVCDALSCAGGAVYFVGGCVRDALLGIARSDVDLATDQTPENVMRLAE 70 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +PT + +GT+ ++ F++TT R D TDGR+A V F+ D + D+ RRDFT+ Sbjct: 71 AAGLRAVPTGLDHGTVTVVSGGTGFEVTTFRRDTSTDGRHAVVSFSTDIREDARRRDFTM 130 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G+++D + G+ D NR ++FI D RI EDYLRILRFFRF A Y + Sbjct: 131 NALYAASDGRLVDPLNGVQDCLNRRVRFIEDPQKRIREDYLRILRFFRFHAWYADPAAGF 190 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A + GL LS+ERI +E+ KLL A +P ++ M G + + Sbjct: 191 DPDALDAIAQNTAGLAQLSAERIGTEMMKLLRAPDPAPSVAAMRQTGCLARVLPGSDDRF 250 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L+ V+ E D +LR L + L R L Sbjct: 251 ---LAPVVHLEGSMGHGPDPVLRLSALGGDMAEDV-------LRLSRAEARKLKQLQVFG 300 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 F +S+ EI Y + +A+ L + + + +I + Sbjct: 301 F--GPMSLAEI-----TYRENADLARGAAILRAAFASQPVPASAQ-----DEISKGAQAE 348 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 FP+ D++ GK +G+ + +Q+WI S F L+++ L L Sbjct: 349 FPIKASDLMP--TYQGKALGDRVRLLEQQWIASGFSLTRDALLAL 391 >gi|83859591|ref|ZP_00953111.1| probable poly(A) polymerase [Oceanicaulis alexandrii HTCC2633] gi|83851950|gb|EAP89804.1| probable poly(A) polymerase [Oceanicaulis alexandrii HTCC2633] Length = 408 Score = 318 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 132/411 (32%), Positives = 209/411 (50%), Gaps = 18/411 (4%) Query: 6 QHKWFHDSDLINILSLLNKGE-DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 +H + D +L ++ GE D++ IVGGAVR++L V+D+DIAT + P + Sbjct: 7 EHAFLSAPDTRAVLDAISPGETDRARIVGGAVRNALQGAPVEDVDIATQLTPQETLDALK 66 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT + +GTI + + K F+ITTLR D+ TDGR A V FT DW D+ RRDF + Sbjct: 67 AAGIKAIPTGLDHGTITAVIKGKPFEITTLRKDVSTDGRRAVVAFTTDWAIDASRRDFRL 126 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NA+YA + G + D G+ D + FIG+A R+ ED LRILRF+RF A YG +D Sbjct: 127 NAIYARRDGSLFDPYDGVADALAHRVVFIGEADERLAEDVLRILRFYRFNAWYGS-ALDP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +G A ++A GLK L+ ER+W E+ LL A +P + M G +F+ ++ + +++L Sbjct: 186 EGHAACVRAAPGLKALARERVWKELKTLLAAPDPGPVVKAMQEGHVFEPVWPERLDLNL- 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 L +I A++ D+L+R L D ++ S+ + LI+ + Sbjct: 245 -LLSIINADRGKGRAPDTLIRAAALCGG-DVTTVRSLGHQMKASNAETDRLIAMCAPAAD 302 Query: 305 QKTLSIP-----EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 P ++ Y G + ++++ A + L HW+ Sbjct: 303 GADSVRPGAEARARRRALYTLGAQTFSDRMRLAEA--------RGEGEADADLDAAAHWR 354 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 KP P+TG D++ G PG ++G ++ + WI+S F L +E L + Sbjct: 355 KPDLPVTGRDLIALGFEPGPQLGAVMKQLEARWIDSDFNLDRETLLARAAE 405 >gi|68171795|ref|ZP_00545137.1| Polynucleotide adenylyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|88657671|ref|YP_507900.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Ehrlichia chaffeensis str. Arkansas] gi|67998786|gb|EAM85496.1| Polynucleotide adenylyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|88599128|gb|ABD44597.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Ehrlichia chaffeensis str. Arkansas] Length = 401 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 136/410 (33%), Positives = 203/410 (49%), Gaps = 15/410 (3%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + ++ +++ I++ + K + +VGG VRDSL+ DID ATT+LP++ + + Sbjct: 4 DFINNENILLIINAIKKFQGDIRLVGGCVRDSLLKRQTIDIDFATTLLPNQTINALTAAH 63 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K IPT I +GTI + ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NAL Sbjct: 64 IKAIPTGIKHGTITALVNNTAYEITTLRSDISCDGRHAEVKFTNNWQQDASRRDFTFNAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 Y D++G V DY G+ DL + + FIGD RI EDYLRILR FRF+A +N SD + Sbjct: 124 YCDEKGIVYDYFSGIQDLEKKHLNFIGDPEIRIQEDYLRILRAFRFYASICSQNKLSDEI 183 Query: 188 V-ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 V + K + LS ERI E KLL N N + M + +I + + Sbjct: 184 VHSCTKYSSYINNLSRERIRDEFFKLLLCPNLSNTLKIMQKCHVLDKIIP------FEVI 237 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 ++ +E + D L + L+ + L K + N + Sbjct: 238 PDIMSSETL--SNTDPLTKLAALLRTNNNNHSLDKIKASLCLSNYSQKTLVSLLNNNLEL 295 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 LS K G ++ L+I A NL + D ++Q + P FP++ Sbjct: 296 PLSTTAQHKHINKLGKEIYCNLLRIIHAEL--NLNYHD---LMQYIEYADQLIIPEFPIS 350 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR-KLIASS 415 G D++ G PGK +G L K W NSS+QL++ L R KL+ S Sbjct: 351 GKDLLNIGYQPGKNLGITLEKIKDLWENSSYQLTKTQLLDYARGKLLKSK 400 >gi|241674815|ref|XP_002400153.1| poly(A) polymerase, putative [Ixodes scapularis] gi|215504191|gb|EEC13685.1| poly(A) polymerase, putative [Ixodes scapularis] Length = 455 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 119/416 (28%), Positives = 202/416 (48%), Gaps = 19/416 (4%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 Q + ++ ++ + + + I GGAVRD LM+ + QD+D ATT P+++ +F Sbjct: 44 PQFRALFTPEVKELVDIFRRHGHELRIAGGAVRDLLMHKAPQDLDFATTATPNQMKSMFE 103 Query: 65 KTRYKVIPT-SISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 ++I T +GT+ K F++TTLR D++TDGR+A+V FT DW+ D+ RRD Sbjct: 104 DEGVRMINTKGEKHGTVTARINDKTNFEVTTLRIDVVTDGRHAEVEFTTDWETDANRRDL 163 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN- 181 T+NAL+ G V D+ G+ DL R + F+GDA RI EDYLRILR+FRF+ + Sbjct: 164 TVNALFLGLDGTVYDFFHGIEDLEKRRVAFVGDAAQRIREDYLRILRYFRFYGRIAVEPD 223 Query: 182 -IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + + L A + GL +S ER+W E+ K+L + + + G+ + L + Sbjct: 224 SHEPEVLTAIRENVGGLGGISGERLWVELKKILVGNFNRELVCRLVDLGVSPFLGLP-ES 282 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 L + +V E + + +L L+ Q + +L+M + L R ++ Sbjct: 283 PDLVEFEKVCERSKHLFPQPTTL--LAALL--QTEAEVLNMHARLKLSAYERDLVLFVVK 338 Query: 301 CNFNQKTL--SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 ++K L + + L + KV + I L Y +L W Sbjct: 339 HRCDKKCLGDRLKPYQALLFTTKGKVGDVQEWICEVLKYRADAE--------LLERFRCW 390 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P FP+ G+ +++ G+ G K +L K+ W S F ++ ++L L +++A Sbjct: 391 DVPRFPVNGNMLLERGLRSGPKFATVLGKLKEIWFESDFAMTSDELLQRLPEILAQ 446 >gi|332029561|gb|EGI69450.1| tRNA-nucleotidyltransferase 1, mitochondrial [Acromyrmex echinatior] Length = 463 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 120/411 (29%), Positives = 209/411 (50%), Gaps = 14/411 (3%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +L + SL K K I GGAVRD LM +D+D AT P ++ +F+ + Sbjct: 45 IFTPELEKLASLFKKYSYKLRIAGGAVRDILMGKQPKDLDFATDATPQQMKDMFTSEEIR 104 Query: 70 VI-PTSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 +I +GTI + F++TTLR D++T+GR+A+V FT+DWK D+ RRD TIN++ Sbjct: 105 MINEKGEKHGTITARINDMENFEVTTLRIDVLTNGRHAQVEFTKDWKLDANRRDLTINSM 164 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSD 185 + D G+V DY G +DL+ + + F+G A RI EDYLRILR+FRF+ + D Sbjct: 165 FLDLDGRVYDYFYGYDDLKKKRVVFVGKASIRIQEDYLRILRYFRFYGRIMDSPNQHDEA 224 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 ++A + GL+ +S ERIWSE NK+L L + + G + I L +E ++ Sbjct: 225 TIIALKENIGGLEQISGERIWSEWNKILSGTFALELTLKLLECGSSRYIGLP-EEPDVEN 283 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 ++ E Q + + + ++ +D+ ++ + ++ L R I Sbjct: 284 FRKIYERAQSNNVTLKPISLIVSML--KDEYEVIKLHERLKLSNSDRDLAIFLV------ 335 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 + +K Y V++ ++K + L + +Q+L + W P FP+ Sbjct: 336 QNRECKPCEKPLKPYQQLVLLQQIKRYDVLKEDVKELLRYRGAIQLLDEFEQWVIPKFPI 395 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ ++KY + K +G++L+ K+ WI++ F+L+ E L + +++ + Sbjct: 396 NGNMLIKY-VTMKKMIGSVLIELKRIWIDTDFKLTNEQLMEHVSSIVSELE 445 >gi|195452400|ref|XP_002073337.1| GK14077 [Drosophila willistoni] gi|194169422|gb|EDW84323.1| GK14077 [Drosophila willistoni] Length = 477 Score = 317 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 126/414 (30%), Positives = 206/414 (49%), Gaps = 24/414 (5%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +L ++SL K + I GGAVRD LM++ +DID+ATT PD++ +F+K + Sbjct: 72 IFTPELEQLVSLFKKYNFELRIAGGAVRDILMSIKPKDIDLATTATPDQMKEMFTKEDVR 131 Query: 70 VIP-TSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 +I +GTI K+ F++TTLR D+ TDGR+A VVFT DW+ D+ RRD TIN++ Sbjct: 132 MINAKGEKHGTITPRINNKENFEVTTLRIDVRTDGRHADVVFTTDWQLDANRRDLTINSM 191 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSD 185 + G V DY G DL+ R I+F+GDA+ RI EDYLR+LR+FRF+ + D++ Sbjct: 192 FLGFDGTVYDYFYGYEDLQERRIRFVGDANIRIKEDYLRVLRYFRFYGRIANDANSHDTE 251 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L+A GL +S ERIWSE+ K++ ++ M + + L L + Sbjct: 252 TLLAVKDNAAGLGRISGERIWSELQKIVVGNYGRELLLEMNRCQLLEYCGLP-SHPELQE 310 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCN 302 ++ + FE +L L+ + + + ++ L R++ F+ + Sbjct: 311 FERLCGDLEQFEPPNHPILYMTGLLHT--VEDAMKLHERLKLSAYERDLALFITQQRDRV 368 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + K Y + + +L L Y+N L++ + W P Sbjct: 369 DKEYSCLRDYQKLCLQPYAKRDYVEQL-----LKYSN--------KLELHRQLKSWATPS 415 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 FP+ G+ + G+ G+K+G L + W +S F+L+ E L L ++I Q Sbjct: 416 FPINGNTLKGSGLV-GQKLGLALTQLRLLWADSDFKLTSEQLMEKLPEIIDQLQ 468 >gi|328707317|ref|XP_003243360.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like [Acyrthosiphon pisum] Length = 458 Score = 317 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 128/411 (31%), Positives = 208/411 (50%), Gaps = 21/411 (5%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q+ + L +L + +K + + + GGAVRD L+ + D+D ATT PD ++ + Sbjct: 48 QYGFIFSPQLTTVLQVFDKYKYEIRLCGGAVRDILLRKTPTDLDFATTATPDEMVEMMEN 107 Query: 66 TRYKVIPTS-ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +++ + +GT+ F++TTLR D++TDGR+A V +T+DW D+ RRD T+ Sbjct: 108 ENIRIVNKGGLKHGTVTTHVDGVNFELTTLRIDVVTDGRHADVEYTKDWLLDAGRRDLTV 167 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 N+++ G + DY GG DL+ R IKF+GD RI EDYLRILR+FRF+ Sbjct: 168 NSMFLGMDGTIYDYFGGYEDLKKRQIKFVGDPKLRITEDYLRILRYFRFYGRLATAPNLH 227 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D L A + GLK +S ERIWSE+ K+LE + I + N G+ I L + Sbjct: 228 DEYILEAIREKGSGLKNISGERIWSELYKILEGNYASDIIKTLLNLGLGPYIGLP-DHPN 286 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS---LPREIRYFLISFF 299 +D+ +VI + + ++L + +D + ++ + + R++ FLI Sbjct: 287 IDEFDKVINRSKGLKLLPITMLTPFL----KDVQDMIELNNRLKFRVFDRDLGLFLIESR 342 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + + T+ +IK + VM K+ I L YNN +L + W Sbjct: 343 DEKWTPDTIKTNKIKIIQNPTKQGVM--KVYIEQLLMYNNDR--------IILEEFQKWT 392 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP+TG+ + +G+ GKK+G IL + W + FQ E+L +L+ K Sbjct: 393 PLKFPITGNMIKNHGVQDGKKIGIILRKLIEYWADDDFQTDIEELLNLIPK 443 >gi|158321388|ref|YP_001513895.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alkaliphilus oremlandii OhILAs] gi|158141587|gb|ABW19899.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alkaliphilus oremlandii OhILAs] Length = 450 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 114/450 (25%), Positives = 194/450 (43%), Gaps = 43/450 (9%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M+ I + K + IL + + + IVGG VRDS++N S QD DI T P+++M Sbjct: 1 MIEISKIKIQIPKAVEQILDIFSINGYEGYIVGGCVRDSILNKSPQDWDICTNCTPEKMM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSL 118 + S +KVIPT + +GT+ ++ +++TT R D DGR+ + V FT + D Sbjct: 61 ELLS--GFKVIPTGLKHGTVTVVIDHVGYEVTTYRVDGDYRDGRHPEKVQFTASLREDLK 118 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFTINA+ + +IDY GG+ DL NR IK +G+ R EDYLR+LR RF A Sbjct: 119 RRDFTINAMAYHHKDGLIDYHGGMEDLWNRKIKTVGNPLERFSEDYLRMLRAVRFSAQL- 177 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + ++ + +S+ERI E+NK+L + P +V +++ + K I ++ Sbjct: 178 DYTLEERTFQGIRALSHNIGKISTERIREELNKILMTEVPSRGLVLLHDTDLLKYILPEL 237 Query: 239 QEISLDQLSQVIEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSMA-------- 282 + + VF + D +LR L+ K S+ Sbjct: 238 EVCVGFNQHSPHHDKDVFNHILSVVDQTEKDLILRLAALLHDIGKPETFSLDESGIGHFY 297 Query: 283 --------------KKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIA 327 ++ +++ + + + LS IK+L M Sbjct: 298 RHHVASWKTAQKIMRRLKYDNRTIDQVLALVKEHMTRYEKLSDKAIKRLISRVNPSNMHR 357 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP-------LTGDDVVKYGIPPGKK 380 K+ +A + D +L + P ++G +++ G+P GKK Sbjct: 358 LFKLQIADIGGSSKRNDISDVLDLKRRAERILHEKQPLSIKDLEISGHHLMELGVPEGKK 417 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +G IL + + + + L + R+ Sbjct: 418 IGRILNELMEIVLENPELNTTNTLLQIARE 447 >gi|149204355|ref|ZP_01881322.1| Poly A polymerase family protein [Roseovarius sp. TM1035] gi|149142240|gb|EDM30287.1| Poly A polymerase family protein [Roseovarius sp. TM1035] Length = 381 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 132/403 (32%), Positives = 198/403 (49%), Gaps = 26/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W D + ++L + ++ VGG VR++L+ + V DIDIAT P+ VM + Sbjct: 3 VSGAWIEDKATQAVCAMLTEAGYQALFVGGCVRNALLEMPVGDIDIATDARPEMVMELAH 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +PT + +GTI ++ ++TT R D+ T GR+A V F D + D+ RRDFT+ Sbjct: 63 AAGLRPVPTGLEHGTITVVSGHIGHEVTTFREDVQTFGRHAVVAFANDLRTDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G V+D +GGL DLR R ++FI DA RI EDYLRILRFFRF A YG+ + Sbjct: 123 NALYAQTDGAVVDPLGGLEDLRARRVRFIEDADQRIREDYLRILRFFRFHAWYGDPEGGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + Sbjct: 183 DAEGLAACAGNVEGIVGLSRERVGAEMRKLLAAPDPAPSVAAMQATGVLAVVLPGSDARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + E D++LR L ++A++ L R L S Sbjct: 243 LPLL---VHLESETNTAPDAILRLAAL-------GGEAVAERLRLSRAEARRLDSL---- 288 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + +L Y +G A L + AL N +D D+ K Sbjct: 289 -RGAAADMMHAAELGYRHGIAEGRAILLLRAALLENTWQARDA-------EDLAKGAKAR 340 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+T D++ G +G L ++ WI S F L+++DL Sbjct: 341 FPVTAADLMPE--YTGPALGERLHALERRWIESGFALTRDDLL 381 >gi|260576142|ref|ZP_05844135.1| Polynucleotide adenylyltransferase region [Rhodobacter sp. SW2] gi|259021622|gb|EEW24925.1| Polynucleotide adenylyltransferase region [Rhodobacter sp. SW2] Length = 380 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 133/404 (32%), Positives = 193/404 (47%), Gaps = 28/404 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + + + L ++ VGG VR++L+ L+V DIDIAT +P+ V + Sbjct: 3 ISGPWMQAAPTQAVCAALTGAGFRALFVGGCVRNALLGLAVADIDIATDAVPETVTNLAE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I +ITT R D+ T GR+A V F+ D D+ RRD T+ Sbjct: 63 NAGFKVVPTGIDHGTVTVIAAGIAHEITTFRRDIETHGRHATVAFSTDIADDATRRDLTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 NALYA G+V+D +GGL DL R ++F+GDA+ RI EDYLRILRFFRF A YG+ N I Sbjct: 123 NALYATPDGEVVDPMGGLADLMARQVRFVGDANARITEDYLRILRFFRFHAIYGDPNGGI 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A G++ LS ERI +E+ KLL A NP A+ M G+ + + + Sbjct: 183 DAEGLAACAANSAGIETLSCERITAEMRKLLSADNPGPAVAAMARSGVLNAVLPGADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + + L R VL L+ R +F + Sbjct: 243 LAPLVHLEG-----DTPPHWLRRLAVL-------GGLAQTAHLRFSRAE---TTTFGHIR 287 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 TL +L Y G + + AL +T D I Sbjct: 288 DEIATLKPA--SELGYRLGVALAKDVILARAALF-------ETPPPNAWQDDAIRGAAAK 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 FPL D++ G +G+ L +Q WI+S F L++ L Sbjct: 339 FPLRAADLMPA--LHGPALGDRLRVLEQAWIDSGFSLTRAQLLA 380 >gi|170755697|ref|YP_001781925.1| polyA polymerase family protein [Clostridium botulinum B1 str. Okra] gi|169120909|gb|ACA44745.1| polyA polymerase family protein [Clostridium botulinum B1 str. Okra] Length = 450 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 103/435 (23%), Positives = 185/435 (42%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R+ +V FT + + D RRD TINA+ + + + Sbjct: 77 GTVTILISSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +S L + + Sbjct: 137 VDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFHMEESIKLN-IRELSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E+ K+L + P+ I ++ + I +++ + + + V Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGIKNIVELNLMDYIIPELKACVGFEQHNIHHDKDV 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKS----------------------ILSMAKKF 285 + + + LR L+ K + K+ Sbjct: 256 YGHILSVVENVPNKLELRLAALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKDILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + + L P IKK G + ++ +A + Sbjct: 316 KFDNKTIDKVDKLVYNHMARYNKLKTPNIKKFINKVGIDNLDDLFELQIADIKGSAKEYH 375 Query: 345 T--------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + ++LS+ + G D++K GI GK++G +L + + Sbjct: 376 SFDSVLNLKIKCEKILSEKQPLTIKDLDINGHDLMKLGINQGKEIGIMLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|187779033|ref|ZP_02995506.1| hypothetical protein CLOSPO_02628 [Clostridium sporogenes ATCC 15579] gi|187772658|gb|EDU36460.1| hypothetical protein CLOSPO_02628 [Clostridium sporogenes ATCC 15579] Length = 450 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 104/435 (23%), Positives = 187/435 (42%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINTLQENNYEAYIVGGAVRDSLLERKVNDWDITTSADPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R +V FT + K D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKKGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 IDY GL DL N+ I+ +G++ R ED LR+LR RF + +++ + K Sbjct: 137 IDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLN-FHMEESTKFNIRELSK 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E+ K+L + P+ I ++ + I ++++ + + + V Sbjct: 196 NINNVSMERIRDELCKILVSSQPVYGIRNIVELNLVDYIIPELKDCVGFEQHNIHHDKDV 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKSILS----------------------MAKKF 285 + + + LR L+ K S + K+ Sbjct: 256 YGHILSVVENVPNKLELRLAALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKHILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + + L P IKK G + ++ +A + Sbjct: 316 KFDNKTIDKVDKLVYNHMTRYNKLRTPSIKKFINKVGIDNLDDLFELQIADIKGSAKEYH 375 Query: 345 TCFIL--------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + + ++LS+ + G D++K GI G+++G +L + + Sbjct: 376 SFNNILNLKIKCEKILSEKQPLTIKDLDIDGHDLIKLGIKQGEEIGIVLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|254460336|ref|ZP_05073752.1| tRNA-nucleotidyltransferase 1 [Rhodobacterales bacterium HTCC2083] gi|206676925|gb|EDZ41412.1| tRNA-nucleotidyltransferase 1 [Rhodobacteraceae bacterium HTCC2083] Length = 381 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 137/404 (33%), Positives = 193/404 (47%), Gaps = 27/404 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 VQ W D+ + L ++ VGG VR++L+ + V DIDIAT P+ V+ Sbjct: 3 VQGAWIEDAATQVVCDALTSQGFQTLFVGGCVRNALLGVDVSDIDIATDATPEDVVECAR 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT I +GTI ++ ++TT RSD TDGR+AKV F++ D+ RRDFT+ Sbjct: 63 LAGLKSIPTGIDHGTITVVSAGIPHELTTFRSDTETDGRHAKVRFSKSILEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NA+YAD G V+D + G+ DL R ++FIGDA RI EDYLR LRFFRF A YG+ I Sbjct: 123 NAIYADPAGFVVDPLNGMPDLNARHVRFIGDAEARIREDYLRSLRFFRFTAWYGDPGLGI 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D DGL A GL+ LS ER+ SE+ KL+ A NP A+ M + G+ + + + Sbjct: 183 DPDGLAAVAANLDGLEGLSRERVGSELKKLMTAANPAMAVAAMRSSGVLHAVLPSADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L I EQ D + R L + AKK L + L S Sbjct: 243 LGPL---IHLEQRLNIAPDPIRRLSAL-------TTSDAAKKLRLSK-----LESKRWAV 287 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + L YL+G L + A + + + + + L Sbjct: 288 LRDEVETTKPAAHLGYLHGSNTAKDVLLLRSAFLEMPINEE-------AIQESNKGETAL 340 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 FP+ D+ G +G L +Q WI S F LS+++L Sbjct: 341 FPIKAKDLPHL---SGCALGEALTTLEQRWIASGFTLSRDELLA 381 >gi|300024044|ref|YP_003756655.1| polynucleotide adenylyltransferase region [Hyphomicrobium denitrificans ATCC 51888] gi|299525865|gb|ADJ24334.1| Polynucleotide adenylyltransferase region [Hyphomicrobium denitrificans ATCC 51888] Length = 418 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 130/395 (32%), Positives = 199/395 (50%), Gaps = 7/395 (1%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W L N+ + + + + +VGGA+R++L++ V D+D+AT +PD V+ + + Sbjct: 15 WLDAKPLRNVFAAFDAAQAEVRVVGGAIRNTLIDRPVIDVDLATPAVPDAVIELARRAGL 74 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 PT I +GT+ ++ F++TTLR D+ TDGR+A V FT+ W D+ RRDFTINALY Sbjct: 75 GAHPTGIEHGTVTLVSDGVGFEVTTLRRDIETDGRHATVAFTQSWDEDAQRRDFTINALY 134 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G + D +GG+ DLR R ++FIGD RI EDYLRILRFFRF A YG+ ++D DGL Sbjct: 135 CAPDGAIYDPMGGIADLRRRRVRFIGDGEARIREDYLRILRFFRFSAEYGKGHLDVDGLA 194 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A+IK K+GL L++ERI +E KLL A + MY I + + ++L++ Sbjct: 195 AAIKLKQGLSKLAAERIRAEFLKLLAAPYAAEVVRAMYESEILALVLPGT--LHPERLAR 252 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + E D + L + + +A++ L L S + + Sbjct: 253 LQAIEAGLGQPPDVICGLAAL-AVSGPGDVDELAQRLRLSNSEASALRSAASFDPGLDPA 311 Query: 309 SIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 Y G + + +A +N D + + L + W P P +G Sbjct: 312 QPEAAACAALYRLGSEAF--RRAAVVAWARSNAAATDAAWRKRAL-LVDRWSPPKMPFSG 368 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 DV+ GIP G VG IL + WI ++F + Sbjct: 369 SDVLALGIPAGPSVGEILRAFETWWIAAAFPADRA 403 >gi|253771292|ref|YP_003034142.1| poly A polymerase family protein [Clostridium botulinum D str. 1873] gi|253721444|gb|ACT33736.1| poly A polymerase family protein [Clostridium botulinum D str. 1873] Length = 470 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 198/434 (45%), Gaps = 47/434 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ IVGG VRDSL+ D DI T+ LP+ V+ IF Y ++PT + + Sbjct: 42 IIHKLQEFNYEAYIVGGCVRDSLLEKKPNDWDITTSALPNEVINIFKNLGYTILPTGLKH 101 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++++TT R D D R+ +V FTR+ K D RRDFTIN++ + + + Sbjct: 102 GTVTIVINNEHYEVTTYRIDGEYEDNRHPNEVEFTRNLKEDLNRRDFTINSMAYNHKDGL 161 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 IDY NDL +R IK +GD R ED LRILR +RF A + I++ L A+ + K Sbjct: 162 IDYFNSKNDLDSRIIKCVGDPVKRFSEDALRILRAYRFAAQL-DFKIENKTLNATRQLKG 220 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LK +S ERI EINK+L +Y GI K IF ++ + + + + + Sbjct: 221 NLKNISIERIRDEINKILLTD--STIFFQLYKFGILKIIFPELHQCHNVEQNSPYHMKNL 278 Query: 256 FEWKIDSL--------LRFIVLISW----------------------QDKKSILSMAKKF 285 F I+S+ L+ +L+ + K+ Sbjct: 279 FNHIINSVLNIEPKLHLKLTMLLHAICTVQCKTTDEKGIDYFHNHEELSSYKAKKILKRM 338 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA------LHYNN 339 +S N+K S I+KL L G+ LK+ A L Y + Sbjct: 339 KYDNNTINK-VSILIKYHNRKIDSNKSIRKLLSLIGEDNFRDLLKVKEADIKAQNLKYYH 397 Query: 340 LTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 H I L++I+ + + G D+++ G GK +G+IL + ++ + + Sbjct: 398 ERHNKLIEIEARLNEILSKNQCFLLKDLKVNGRDLLELGYS-GKDIGDILNNLLEKVLEN 456 Query: 396 SFQLSQEDLHHLLR 409 + L +++ Sbjct: 457 PDLNDKNKLISIIK 470 >gi|291518259|emb|CBK73480.1| uncharacterized domain HDIG [Butyrivibrio fibrisolvens 16/4] Length = 442 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 101/443 (22%), Positives = 194/443 (43%), Gaps = 50/443 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +D+ I+++L ++ VGG VRD ++ + D DI T+ LP+ V +F +T Sbjct: 5 ADVSKIINILESNGHEAYAVGGCVRDCILGKNPHDWDITTSALPETVKSLFDRT----FD 60 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R D DGR+ +V FT + D RRDFTINA+ + Sbjct: 61 TGIEHGTVTVLMHGVGYEVTTYRVDGKYEDGRHPKEVTFTASLEEDLKRRDFTINAMAYN 120 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D GG DL+ IK +G+ R ED LR+LR RF A G I+ A Sbjct: 121 ESKGLVDLFGGEADLQAGIIKAVGNPTERFTEDALRMLRALRFSAQLG-FEIEPATYQAI 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQV 249 + L+ +S+ERI E+ KL+ + +P I +Y G+ K F + + DQ+++ Sbjct: 180 KELAPTLERISAERIQVEMVKLVTSPHPER-IRDVYETGLTKIFFPEFDTMMECDQVNK- 237 Query: 250 IEAEQVFEWKI--------DSLLRFIVLISW----------------------QDKKSIL 279 V E I D +LR +++ + Sbjct: 238 HHMYTVGEHTIVAMGLIPEDKVLRLAMMLHDVAKPVCKTTDENGQNHFKMHPVKGADLAR 297 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK------IFL 333 + ++ + + + + ++ +S ++++ G + L + Sbjct: 298 EILRRLKFDNDTVAKVCNLVKNHDDRPEISQRNVRRMIIRVGQENFDDLLAVKRADTLAQ 357 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW----KKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 ++++ + +V ++I+ + + G D++ G+P G+++G IL Sbjct: 358 SMYHREEKLAYIDELQRVYNEIVAAGDCLRIKDLKINGKDLIAMGVPQGQQIGAILNAIF 417 Query: 390 QEWINSSFQLSQEDLHHLLRKLI 412 E + + +E L + R ++ Sbjct: 418 DEVVENPSLNDRETLLNKARSMV 440 >gi|254420680|ref|ZP_05034404.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Brevundimonas sp. BAL3] gi|196186857|gb|EDX81833.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Brevundimonas sp. BAL3] Length = 401 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 132/418 (31%), Positives = 192/418 (45%), Gaps = 24/418 (5%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 VS+ W +++ L + VGG VR+SL+ V DIDIAT + P+ Sbjct: 3 VSMRGQPWLEAKATRAVMAALQAAGGPDCARFVGGCVRNSLLGQPVDDIDIATRLRPEET 62 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 M K +PT + +GT+ + +K ++ITTLR D+ TDGR A V FT DW D+ R Sbjct: 63 MTALQAAGLKAVPTGLEHGTVTGVSERKPYEITTLRRDVETDGRRAVVAFTEDWAEDAAR 122 Query: 120 RDFTINALYADQQGKVIDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDF +NALYAD G V D GGL D I F+G+A RI EDYLRILRFFRF A YG Sbjct: 123 RDFRLNALYADAAGTVFDPTGGGLADAAKGRIVFVGEAETRIREDYLRILRFFRFQAWYG 182 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 D+ GL A K G+ LS+ER+ E+ KLL A++P + + M G+ ++ + Sbjct: 183 RGQPDATGLAACAALKAGMAQLSAERVSKELMKLLAARDPRSTVRAMAETGVLGQVLPEA 242 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 Q ++L E + D +LR L+ D+ +++ +A L R L + Sbjct: 243 QPLNL--------FEAMCGLTGDPVLRLSALLP-ADEGAVVRIAGSLRLSNGTRDRLAAA 293 Query: 299 -FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 ++ E + Y G +L + Sbjct: 294 VAEGPVVATDMTEAEARAAIYRLGRDAFEDRL---------TRAEAAGGDGGALRRLAAG 344 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 W P P+ G D+ + G+ PG + G +L + WI F + LR +AS Sbjct: 345 WTPPKMPVGGRDLARLGLKPGPETGRVLKAFEAGWIADDFPSDGHE--GRLRAAMASP 400 >gi|73667505|ref|YP_303521.1| polynucleotide adenylyl transferase [Ehrlichia canis str. Jake] gi|72394646|gb|AAZ68923.1| Polynucleotide adenylyl transferase [Ehrlichia canis str. Jake] Length = 396 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 140/403 (34%), Positives = 213/403 (52%), Gaps = 16/403 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + D+++I++ + K + + +VGG VRD+++ DID ATT+LP++++ + K Sbjct: 7 SNDDILSIINAIKKFQGEIRLVGGCVRDNMLKRQTTDIDFATTLLPNQIVESLTTANIKT 66 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 IPT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NALY D Sbjct: 67 IPTGIKHGTITAIVNNTAYEITTLRSDINCDGRHAEVKFTNNWRQDASRRDFTFNALYCD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV-A 189 +QG V DY G+ DL + + FIGD RI EDYLRILR FRF+ KN SD ++ Sbjct: 127 EQGIVYDYFSGIEDLEKKQLNFIGDPEIRIKEDYLRILRAFRFYTSICSKNTLSDQIIYC 186 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K + LS ERI E KLL N N + M + ++I +I+ D +S Sbjct: 187 CTKYSSCINKLSKERIRDEFFKLLSYANLTNTLKIMQKCQVLEKIIPF--DITPDIMSSD 244 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 I + D L + L+ +K S+ ++ L + +++ N + LS Sbjct: 245 ILS------NTDPLTKLAALLR-TNKCSLDTIKVSLCLSNHDQK-ILALLLNNNLELPLS 296 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 I E +K G KV +KI A NL H D ++Q + + P FP++G D Sbjct: 297 IIEQQKYINKLGKKVYCNLMKIRHAEL--NLNHHD---LVQYIEYADKFIIPEFPISGKD 351 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + G GK +G L K W +SS+QL++ L + ++L+ Sbjct: 352 LFNIGYQEGKNLGKTLKKIKDLWEDSSYQLTKSQLLNHAKELL 394 >gi|221131830|ref|XP_002154568.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 436 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 125/411 (30%), Positives = 212/411 (51%), Gaps = 19/411 (4%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K D D++ + ++ K + IVGGAVRD L+ +DID++TT P +++ +FS+ + Sbjct: 34 KSLLDDDVVGLCNIFIKKGFEIRIVGGAVRDVLLGNPAKDIDLSTTATPQQMVEVFSENK 93 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + I T +++GT+ + F +TTLR D+ TDGR+AKV FT DWK D+ RRD T N++ Sbjct: 94 IRFIETGLAHGTLTAHYNGRDFQVTTLRYDIETDGRHAKVEFTNDWKLDAERRDLTFNSM 153 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSD 185 D + DY G NDL+ ++F+G+ +RI EDYLRILR+FRF+ + D Sbjct: 154 SMDVNAVLYDYFNGENDLKQGVVRFVGNVENRIREDYLRILRYFRFYGRIAPNIHSHDEK 213 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLD 244 L +GLK L+ ERIW E++K+L + ++ M + + I F V E +L Sbjct: 214 TLNTIKTLSEGLKNLAVERIWLEVSKILTGPLAPHLLLLMQQLNVTESIGFPIVLEDNLK 273 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNC 301 V + + +LL ++ +++K + K+ L + R F+IS + Sbjct: 274 LFETVWTQTRNVDVSPVTLLVTLL----ENEKIMEDFGSKWKLSNKERIMGLFIISHRSL 329 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIA-KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + + + L L +K + + ++ + Y+ + ++ W Sbjct: 330 RNYSEKCPLKPYQDLIVLNSNKGDASVRERVRQLMFYHGKITES--------FELDKWDI 381 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P+FP+TG D+ GI G + G IL+ K+ W+NS + S+EDL + ++ Sbjct: 382 PIFPITGLDLKNCGIKQGPEFGKILIKLKKIWMNSYYCDSKEDLLKKIPEI 432 >gi|195055207|ref|XP_001994511.1| GH15807 [Drosophila grimshawi] gi|193892274|gb|EDV91140.1| GH15807 [Drosophila grimshawi] Length = 457 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 121/415 (29%), Positives = 207/415 (49%), Gaps = 25/415 (6%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +L +++L K + I GGAVRD LM + +D+D ATT P+++ +F+K + Sbjct: 44 IFTPELETLVALFKKYNYELRIAGGAVRDILMKIKPKDVDFATTATPEQMKEMFTKEDVR 103 Query: 70 VIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 +I +GTI + F++TTLR D+ TDGR+A VVFT +W+ D+ RRD TIN++ Sbjct: 104 MINAKGEKHGTITPRINDMENFEVTTLRIDVRTDGRHADVVFTTNWQLDANRRDLTINSM 163 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSD 185 + G V DY G +D++ R I F+GDA RI EDYLRILR+FRF+ D Sbjct: 164 FLGLDGTVYDYFYGYDDVQRRRIIFVGDADVRIKEDYLRILRYFRFYGRIAADPNSHDPA 223 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L A GL +SSER+W+E+ K++ ++ MYN G+ + L Q ++ + Sbjct: 224 TLAAIKANGAGLARISSERVWAELRKIIAGNFGRELVLEMYNCGLLEHCGLPAQP-NISE 282 Query: 246 LSQVIEAEQVFEWK-IDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNC 301 ++ + + FE + +L L+ + + + ++ L R++ F+ + Sbjct: 283 FERLCNSFKRFEEESHHPILYMCGLLHT--TEQAMQLHERLKLSAYERDLALFITQQRHR 340 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 N+ K Y + + L L Y N L++ + W+ P Sbjct: 341 IDNEYKSLRDCQKLCLQPYAKRDYVEHL-----LKYAN--------KLELYQQLKAWQIP 387 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 FP+ G+ + YG+ +K+G +L + W++S ++L+ E+L + ++ Q Sbjct: 388 NFPIKGNMLSSYGLVH-RKLGLVLNELRLLWVDSDYKLTAEELLESVPTIMEQMQ 441 >gi|295094343|emb|CBK83434.1| uncharacterized domain HDIG [Coprococcus sp. ART55/1] Length = 443 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 109/443 (24%), Positives = 181/443 (40%), Gaps = 50/443 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ L ++ IVGG VRDS++ D DI T+ P++V IF +T + Sbjct: 7 EGANKVIEGLEAAGYEAYIVGGCVRDSILGREPGDWDITTSARPEQVKEIFRRT----VD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ K+ +++TT R D +D R +V FT + D RRDFTINA+ Sbjct: 63 TGIEHGTVTVMMGKEGYEVTTYRIDGEYSDHRRPDQVEFTASLEEDLKRRDFTINAMAYS 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +ID GG+ DL ++ I+ +G A R ED LRILR RF G +I+ D A Sbjct: 123 HSKGIIDMFGGVQDLNDKVIRAVGVARDRFDEDALRILRAIRFAGQLG-FDIERDTRKAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248 I + LK +S+ERI E+ KLL + +P + Y GI I + ++ + Sbjct: 182 IIQAQYLKDISAERIRVELTKLLVSDHPDKLLEA-YVTGITAYILPEFDKMMEQPQNNQY 240 Query: 249 ------VIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------------ILS 280 V E V + D +R+ L+ K S S Sbjct: 241 HRYNVGVHSIEAVKNIRADVTMRWAALLHDIGKPSTHTVDENGTDHFYDHQIAGVPLAES 300 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTL--SIPEIKKLFYLYG----------DKVMIAK 328 + ++ + + I+KL G K +A Sbjct: 301 VLRRLKFDNNTIKDVCKLVRWHDFGMGCVPKKNTIRKLLGEVGKDFFPYIIEIKKADMAA 360 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + + + ++++D + + G D++K GI PG ++G IL Sbjct: 361 QSDYKLEERQSQLAELEKKYEEIVADADCVRIKDLKVNGGDLIKLGIKPGPQMGEILQKL 420 Query: 389 KQEWINSSFQLSQEDLHHLLRKL 411 I + +E L ++++ Sbjct: 421 LDMVIEDPEKNGREYLLDQVKQM 443 >gi|226324134|ref|ZP_03799652.1| hypothetical protein COPCOM_01912 [Coprococcus comes ATCC 27758] gi|225207683|gb|EEG90037.1| hypothetical protein COPCOM_01912 [Coprococcus comes ATCC 27758] Length = 450 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 108/421 (25%), Positives = 176/421 (41%), Gaps = 48/421 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I++ L K ++ VGG VRDS + D DI T+ P+ +F++T T I Sbjct: 13 RIITTLQKHGFEAYAVGGCVRDSFLGRVPGDWDITTSAAPEETKSLFART----FDTGIE 68 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTI ++ + F++TT R D D R+ KV FTR D LRRDFTINA+ ++Q Sbjct: 69 HGTITVLLNGEGFEVTTYRIDGKYEDNRHPSKVQFTRSLSEDLLRRDFTINAMAYNEQDG 128 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D G+ DL+ I+ +G+A R ED LRILR RF A G I+ + A K Sbjct: 129 LVDLFHGMEDLKKGVIRCVGNAEARFSEDALRILRAIRFSAQLG-FEIEKETRQAIRKLA 187 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L +S+ERI +E+ KLL + +P I Y GI K I + + + Sbjct: 188 PNLSYISAERIQTELVKLLISDHPEK-IQDAYELGITKVILPEFDAMMETTQETLHHCYN 246 Query: 255 VFEWKI--------DSLLRFIVLISWQDKKS----------------------ILSMAKK 284 V E I D +LR +L K + S+ + Sbjct: 247 VGEHTIHALMNIPADKVLRLTMLFHDTGKPARKTVDPDGTAHFKGHAYVSEELTKSIMHR 306 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + ++ ++ +++ ++ +K+ +A +Q Sbjct: 307 LKFDNDTLRKVSKLVLYHDDRMPATMKHVRRAMNRISAELFPYYMKVRMADTLAQSDYQR 366 Query: 345 TCFILQV------LSDIIHWKKP----LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 + + +I+ K+ + G D++ GI G K+G L QE I Sbjct: 367 DKKLENLAGIEKCYQEILEKKQCVSLKELKVNGQDLIAAGIEKGPKIGQTLQTLLQEVIE 426 Query: 395 S 395 Sbjct: 427 E 427 >gi|148380252|ref|YP_001254793.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC 3502] gi|153930928|ref|YP_001384558.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC 19397] gi|153936961|ref|YP_001388074.1| polyA polymerase family protein [Clostridium botulinum A str. Hall] gi|148289736|emb|CAL83842.1| Poly A polymerase family protein [Clostridium botulinum A str. ATCC 3502] gi|152926972|gb|ABS32472.1| polyA polymerase family protein [Clostridium botulinum A str. ATCC 19397] gi|152932875|gb|ABS38374.1| polyA polymerase family protein [Clostridium botulinum A str. Hall] Length = 450 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 102/435 (23%), Positives = 186/435 (42%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R+ +V FT + + D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + ++ + K + Sbjct: 137 VDYFYGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLN-FCMEESIKLNIRKLSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E+ K+L + P+ I ++ + I +++ + + + V Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGIRNIVELNLMDYIIPELKACVGFEQHNIHHDKDV 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKS----------------------ILSMAKKF 285 + + + LR L+ K + K+ Sbjct: 256 YGHILSVVENVPNKLELRLAALLHDIGKPRCFSIGDNGQGHFYGHQKISADMTKDILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + + L P IKK G + ++ +A + Sbjct: 316 KFDNKTIDKVDKLVYNHMTRYNKLRTPNIKKFINKVGIDNLDDLFELQIADIKGSAKEYH 375 Query: 345 TCFIL--------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + + ++LS+ + G D++K GI GK++G +L + + Sbjct: 376 SFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|158425129|ref|YP_001526421.1| putative poly(A) polymerase [Azorhizobium caulinodans ORS 571] gi|158332018|dbj|BAF89503.1| putative poly(A) polymerase [Azorhizobium caulinodans ORS 571] Length = 413 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 136/402 (33%), Positives = 207/402 (51%), Gaps = 11/402 (2%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 S+ + L +L+ LN +++ IVGGAVR+ L+ +V ++D+A+T LP+ V+R Sbjct: 5 SLAGAAFLAAPPLRAVLAALNGDGEETRIVGGAVRNGLLGEAVGEVDLASTCLPEEVVRR 64 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 K +PT I++GT+ ++ F++TTLR D+ TDGR+A V F RDW D+ RRDF Sbjct: 65 AEGAGLKSVPTGIAHGTVTVVSAGVPFEVTTLREDVETDGRHAVVRFGRDWARDAARRDF 124 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 T+NALYAD G V D VGGL DL R ++FIGDA RI ED+LRILR FRF A Y + + Sbjct: 125 TLNALYADADGLVFDPVGGLPDLMARRVRFIGDAETRIREDHLRILRLFRFHATYAKGPV 184 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++ L A+ + + GL LS ER+ +E+ KLL A+ + +V M + G+ I V ++S Sbjct: 185 DAEALRAAERLRAGLDQLSRERVRAELVKLLVARRAADTLVEMTDAGLLTRILAGVPDLS 244 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + + E + + R L + + + + + L L++ Sbjct: 245 --GFAHLARLEPELGIQPAPMRRLAAL-AVRIPEDAERLRVRLRLANAEHARLLALAGAR 301 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 LS PE + L + G V L I A + + W P Sbjct: 302 AVGPGLSAPEARALIFALGADVFRDALLIAAARRGGDPSALLALA--------AAWPVPE 353 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 FPLT D++ G+ PG K+G L ++ W+ + F E L Sbjct: 354 FPLTARDLMALGLKPGPKLGAALASAREAWVAADFPHDAETL 395 >gi|323136281|ref|ZP_08071363.1| Polynucleotide adenylyltransferase region [Methylocystis sp. ATCC 49242] gi|322398355|gb|EFY00875.1| Polynucleotide adenylyltransferase region [Methylocystis sp. ATCC 49242] Length = 411 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 127/416 (30%), Positives = 207/416 (49%), Gaps = 11/416 (2%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D L + + L K ++ +VGGAVRD+L L +ID+ATT LP+ V+ Sbjct: 3 LAQRLLDDPRLATLFAALAKTGGETRVVGGAVRDALFGLPPHEIDLATTALPEDVLAAAR 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GT+ I+ F++TTLR D+ TDGR+AKV F D+ D+ RRDFT+ Sbjct: 63 DAGLKGVPTGIEHGTVTIVVAGTPFEVTTLREDVETDGRFAKVRFGGDFDQDARRRDFTV 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NAL G++ D GG+ DL R I+FIGDA RI EDYLR+LRFFRF A +GE D Sbjct: 123 NALSLTPDGELHDPTGGIADLEARRIRFIGDAATRIREDYLRVLRFFRFNASHGEGAFDR 182 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +GL SI A++ L LS ER+ +E+ KLL A+ + M G+ + I L+ Sbjct: 183 EGLHESIIARENLARLSRERVRAELVKLLPARRAPEVVRAMSQAGVIEVILGMGYPARLE 242 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL----ISFFN 300 +L+ E K D++LR + + + + L + L + Sbjct: 243 RLAAF---EAAQGKKPDAVLRLAA-FAVLTVEDAERLRDRLRLSNDEWSRLSAAARTLAA 298 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + ++ + ++++ ++ G + + D L+ + Sbjct: 299 LHGIERPPPVSHLREMLFICGARAAADA---LALAFAESAAAPDDPQWLEAAKYLDENPA 355 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P FP+ G D++ G+ PG+++G +L + +WI + F + + LL + + + Sbjct: 356 PAFPIRGADLIARGVAPGRELGAVLKSLQAQWIRAGFPRDPQAVMQLLEEAVGIKE 411 >gi|322806644|emb|CBZ04213.1| tRNA nucleotidyltransferase [Clostridium botulinum H04402 065] Length = 450 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 101/435 (23%), Positives = 185/435 (42%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK++PT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIVPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R +V FT + + D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLREDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + ++ + K + Sbjct: 137 VDYFYGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLN-FCMEESIKLNIRKLSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E+ K+L + P+ I ++ + I +++ + + + V Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGIRNIVELNLMDYIIPELKACVGFEQHNIHHDKDV 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKS----------------------ILSMAKKF 285 + + + LR L+ K + K+ Sbjct: 256 YGHILSVVENVPNKLELRLAALLHDIGKPRCFSIGDNGQGHFYGHQKISADMTKDILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + + L P IKK G + ++ +A + Sbjct: 316 KFDNKTIDKVDKLVYNHMTRYNKLRTPNIKKFINKVGIDNLDDLFELQIADIKGSAKEYH 375 Query: 345 TCFIL--------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + + ++LS+ + G D++K GI GK++G +L + + Sbjct: 376 SFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|168183936|ref|ZP_02618600.1| polyA polymerase family protein [Clostridium botulinum Bf] gi|237795817|ref|YP_002863369.1| polyA polymerase family protein [Clostridium botulinum Ba4 str. 657] gi|182672935|gb|EDT84896.1| polyA polymerase family protein [Clostridium botulinum Bf] gi|229261764|gb|ACQ52797.1| polyA polymerase family protein [Clostridium botulinum Ba4 str. 657] Length = 450 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 102/435 (23%), Positives = 188/435 (43%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R +V FT + K D RRD TINA+ + + ++ Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKTRL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +GD+ R+ ED LR+LR RF + +++ ++ + + Sbjct: 137 VDYFHGLEDLNNKIIRCVGDSKDRLNEDSLRMLRCIRFASQLN-FHMEESTKLSIRELSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E+ K+L + P+ I ++ + I +++ + + + V Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGIRNIVELNLVDYIIPELKACVGFEQHNIHHDKDV 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKS----------------------ILSMAKKF 285 + + + LR L+ K + K+ Sbjct: 256 YGHILSVVENVPNKLELRLAALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKDILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + Y + + + L IKK + ++ +A + Sbjct: 316 KFDNKTIYKVDKLVYNHMTRYNKLRTSSIKKFINKVEIDNLDDLFELQIADIKGSAKEYH 375 Query: 345 TCFIL--------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + + ++LS+ + G D++K GI GK++G +L + + Sbjct: 376 SFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|307166915|gb|EFN60819.1| tRNA-nucleotidyltransferase 1, mitochondrial [Camponotus floridanus] Length = 478 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 124/411 (30%), Positives = 209/411 (50%), Gaps = 20/411 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI- 71 +L + +L K + I GGAVRD LM+ +D+D AT P ++ +F+K ++I Sbjct: 68 PELQTLANLFKKYNYELRIAGGAVRDILMSKQPKDLDFATDATPQQMKEMFTKEEIRMIN 127 Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI K+ F+ITTLR D++T+GR+A+V FT+DWK D+ RRD TIN+++ D Sbjct: 128 EKGEKHGTITARINDKENFEITTLRIDVLTNGRHAQVEFTKDWKLDANRRDLTINSMFLD 187 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDGLV 188 G + DY G +DL+ + + F+GDA RI EDYLRILR+FRF+ + D + Sbjct: 188 LDGTLYDYFYGYDDLQRKRVVFVGDADTRIREDYLRILRYFRFYGRIMDSPDKHDEATIK 247 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A + GL +S ERIWSE NK+L L + + G K I L +E ++ Sbjct: 248 ALKENIDGLSQISGERIWSEWNKILMGNFALELTLKLLECGASKHIGLP-EEPVVENFRI 306 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCNFNQ 305 V + + + + ++ +D ++++ + L R++ +FL+ + Sbjct: 307 VYQRALSNNVTLKPISLIVSMLRNED--EVMTVHNRLKLSNSDRDLAFFLMQHREYIPCE 364 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 K L + L G + I + + L Y +++L ++ WK P FP+ Sbjct: 365 KPLKPYQQLILIQSTG-RYEIYREYVKEVLRYRGA--------MELLDEVEQWKIPKFPI 415 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ + ++ P K +G +L KQ WI+ F+L+ E L + +++ + Sbjct: 416 NGNMMKEHVSNP-KIIGLVLKKLKQIWIDEDFKLTSEHLLEHIPSILSELE 465 >gi|126738475|ref|ZP_01754180.1| polyA polymerase family protein [Roseobacter sp. SK209-2-6] gi|126720274|gb|EBA16980.1| polyA polymerase family protein [Roseobacter sp. SK209-2-6] Length = 384 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 120/410 (29%), Positives = 188/410 (45%), Gaps = 28/410 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + W + + L + VGG VR++LM + V DIDIAT P+ V+ Sbjct: 1 MRLAGQPWLQHPATQRVCAALTAKGAAAYFVGGCVRNALMGVPVSDIDIATDATPEEVLE 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + K IPT I +GT+ ++ ++TT R D+ TDGR A V F++D D+ RRD Sbjct: 61 LARAAGIKAIPTGIDHGTVTLVEGHIPHEVTTFRRDVATDGRRAVVAFSKDIAEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--E 179 FT+NALYA G ++D + GL DL +R ++FIGDA RI ED+LR LR+FRF A YG + Sbjct: 121 FTMNALYARPDGALVDPLKGLPDLEHRRVRFIGDAGARIREDHLRTLRYFRFHAWYGNHD 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D + L A + +GL LS ERI SE+ KLL A++P A+ M G+ +I Sbjct: 181 AGFDPEALAAIAENLEGLAKLSKERITSELLKLLAAEDPAPALAIMRQTGLLGQILPGAD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + +L L + D + R L + + L + + Sbjct: 241 DRALAPLVHLEG-----SIAPDPIRRLAALGGVE-------LQAHLRLSKS-----QTRL 283 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + + Q + +L Y G + + L + + + Sbjct: 284 HEHLRQAAIGTAGAAELSYRMGRNFAHGAMLLRATLLEQPVEP-------DLERKLQQGA 336 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P+T D++ G+ G +G L + WI S F L +++L + L+ Sbjct: 337 AAKLPVTAQDLMP-GLS-GAALGKALKQLETGWIASGFALGRDELLNSLK 384 >gi|326404402|ref|YP_004284484.1| CCA-adding enzyme [Acidiphilium multivorum AIU301] gi|325051264|dbj|BAJ81602.1| CCA-adding enzyme [Acidiphilium multivorum AIU301] Length = 403 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 122/387 (31%), Positives = 190/387 (49%), Gaps = 20/387 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L + DID+A+ + P+ V +K + +PT + +GTI + + Sbjct: 31 EARVVGGAVRDRLAGRPISDIDLASPLPPEAVATRLAKAGIRAVPTGLDHGTITAVLDGR 90 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 +F+ITTLR DL TDGR+A V FT DW+ D+ RRDFTINA+ + G + DY GG +DL Sbjct: 91 HFEITTLRRDLETDGRHAVVAFTDDWREDAARRDFTINAMSMARDGTIHDYFGGRDDLAA 150 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++F+GD RI ED+LRILRFFRF A Y D + A K GL LS+ER+W Sbjct: 151 GIVRFVGDPTTRIQEDFLRILRFFRFHARYEAGPPDQAAVAAIRALKGGLARLSAERVWQ 210 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 EI ++L A +PL A+ M G+ + + + I ++ Q D LLR Sbjct: 211 EIKRILAAPDPLAALNLMAETGVLQVVLPEAAGI------MALQRLQTRGAPADPLLRVA 264 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 LI ++ +A++ L R L + ++ + + +I Sbjct: 265 ALIGG----AVRPLARRLRLAEAERARLEAIGTAPDLAADAGEAVLRHALADWPAETLID 320 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + + D + + + ++P+FPL G D V G+ PG +G L Sbjct: 321 RSWLA----------ADDADRSALRARLATMERPVFPLKGRDAVAIGVAPGPAIGAALAA 370 Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++ W+ + LR+ +AS Sbjct: 371 VRRWWMAHDCLPDGDACRAELRRHLAS 397 >gi|83591706|ref|YP_425458.1| polynucleotide adenylyltransferase region [Rhodospirillum rubrum ATCC 11170] gi|83574620|gb|ABC21171.1| Polynucleotide adenylyltransferase region [Rhodospirillum rubrum ATCC 11170] Length = 525 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 123/431 (28%), Positives = 203/431 (47%), Gaps = 31/431 (7%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFS 64 W D + +++ L ++ VGG VRDSL+ DIDIATT P+RV+ + Sbjct: 75 DWLVDPRTVAVMTALTAEGGEARFVGGCVRDSLLRRDPLRPMDIDIATTERPERVIALIE 134 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT +++GT+ ++ K F++TTLR D DGR+A+V FT ++ D+ RRDFTI Sbjct: 135 AAGLKAVPTGLAHGTLTVVAGGKPFEVTTLRRDTACDGRHAEVAFTTSFREDAGRRDFTI 194 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NAL AD++G+V DY G++DL ++FIG RI EDYLRILRFFRF A +G D Sbjct: 195 NALSADREGRVFDYFDGISDLHAGWVRFIGRPMDRIAEDYLRILRFFRFHARFGRPPADP 254 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D L A GL LS+ER+ SE+ K+L+ +P ++ M + + + + +++ Sbjct: 255 DALSACAAQAAGLDRLSAERVRSELLKILDTADPAGVLMAMRGVHVLERVLPEAGDVTNL 314 Query: 245 QLSQVIEAEQVF--EWKIDSLLRFIVLI-------------------SWQDKKSILSMAK 283 ++ ++E + D L R ++ S + S ++ Sbjct: 315 RMLTLLETRGLMLPGLGADPLRRLACVVGPPALSAGSGPPALSAVAGSDPSRDSGAALGA 374 Query: 284 KFSLPREIRYFLISFFNC---NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 + L R L + + +++L G ++I + + A Sbjct: 375 RLRLSRAETARLTGMLDAPAGRWPDPDAGEGALRRLLDGEGKDLVIDRALLRWAAERGKG 434 Query: 341 TH---QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + + T ++ + W P FPL G D + G+ G VG L + W+ Sbjct: 435 PYPRAERTARWRALIETALGWTAPTFPLGGRDALACGLK-GPAVGEALAALRGRWLEGGC 493 Query: 398 QLSQEDLHHLL 408 Q ++++ L Sbjct: 494 QAGRDEMLAWL 504 >gi|291548183|emb|CBL21291.1| uncharacterized domain HDIG [Ruminococcus sp. SR1/5] Length = 446 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 102/438 (23%), Positives = 187/438 (42%), Gaps = 48/438 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL +LN+ ++ +VGG VRDS+++ D DI T+ LP++V +F ++ + T Sbjct: 9 AEQILHILNEAGYEAYVVGGCVRDSILDRVPGDWDITTSALPEQVKELF----HRTVDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ K+ F++TT R D DGR+ V FTR + D RRDFTINA+ Sbjct: 65 IQHGTVTVMMGKEGFEVTTYRVDGEYHDGRHPDAVTFTRSLEEDLKRRDFTINAMAYHPG 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG+ D+ + I+ +GD R ED LR+LR RF A G ++ + A + Sbjct: 125 HGLVDLFGGMEDINRKIIRCVGDPVERFTEDALRMLRAVRFSAQLG-FTVEENTKAALAR 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE- 251 L+ +S+ERI +E+ KLL + +P + + + G+ +E + + Sbjct: 184 MSGNLEHVSAERIQTELVKLLVSDHP-DYLRTAWETGLTREFLPEFDACMETAQNTPHHC 242 Query: 252 -------AEQVFEWKIDSLLRFIVLISWQDKKSIL----------------------SMA 282 + + E + D LLR +L+ K + + Sbjct: 243 CSVGEHILKSLTEIENDRLLRITMLLHDIAKPVVKKTDENGRDHFKTHGPAGEKLAGKIL 302 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 ++ + + T ++++ L G+++ LK+ A + T+ Sbjct: 303 RRLKFDNVTIRNTCRLIRYHDLRPTPDAEDVRRAVNLIGEELFPLYLKVQKADLLSQSTY 362 Query: 343 QDTCFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 + + ++ L ++G D++K G P G +G +L Sbjct: 363 RREEKLARLSGVTEAYQGILERGECTSLKTLAVSGKDLIKAGHPAGPALGALLERLLDCV 422 Query: 393 INSSFQLSQEDLHHLLRK 410 + ++E L K Sbjct: 423 LKDPTLNTKEKLLETAEK 440 >gi|153938706|ref|YP_001391608.1| polyA polymerase family protein [Clostridium botulinum F str. Langeland] gi|152934602|gb|ABS40100.1| polyA polymerase family protein [Clostridium botulinum F str. Langeland] gi|295319640|gb|ADG00018.1| polyA polymerase family protein [Clostridium botulinum F str. 230613] Length = 450 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 103/435 (23%), Positives = 187/435 (42%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ IVGGAVRDSL+ V D DI T+ P V+ IF YK++PT + + Sbjct: 17 IINTLQENGYEAYIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIVPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R+ +V FT + + D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRVDGEYEDNRHPKEVKFTSNLREDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +S L + + Sbjct: 137 VDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLNFHMEESIRLN-IRELSR 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E+ K+L + P+ I ++ + I +++ + + + V Sbjct: 196 NIANVSMERIRDELCKILVSSQPVYGIKNIVELNLMDCIIPELKVCVGFKQHNIHHDKDV 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKS----------------------ILSMAKKF 285 +E + + LR L+ K + K+ Sbjct: 256 YEHILSVVENVPNKLELRLAALLHDIGKPKCFSIGDNGQGHFYGHQKISADMTKDILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + + L P IKK G + ++ +A + Sbjct: 316 KFDNKTIDKVDKLVYNHMARYNKLRTPNIKKFINKVGIDNLDDLFELQIADIKGSAKEYH 375 Query: 345 TCFIL--------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + + ++LS+ + G D++K GI GK++G +L + + Sbjct: 376 SFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGKEIGIMLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|148553037|ref|YP_001260619.1| polynucleotide adenylyltransferase region [Sphingomonas wittichii RW1] gi|148498227|gb|ABQ66481.1| Polynucleotide adenylyltransferase region [Sphingomonas wittichii RW1] Length = 401 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 135/416 (32%), Positives = 199/416 (47%), Gaps = 21/416 (5%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + W H L +L L E VGGAVRD+L+ L V+DID AT +LP+ Sbjct: 1 MTLLPDAAWRHLPGLDRLLDALGAAEGDVRFVGGAVRDTLLGLPVKDIDCATRLLPEESS 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R + +K IPT I++GT+ + ++TTLR D+ TDGR A V FT +W+ D+ RR Sbjct: 61 RRIAAAGFKAIPTGIAHGTVTALLPSGPVEVTTLRRDVATDGRRAVVAFTDEWREDAARR 120 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINAL AD G V DY GG DL ++FIGD RI ED+LRILR FRF A +G Sbjct: 121 DFTINALSADPSTGAVHDYFGGRADLDAGLVRFIGDPLRRIAEDHLRILRLFRFHARFGR 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D+ L A I L LS ER+ E+ KLL +P + M++ GIF+ I ++ Sbjct: 181 GTPDAAALDACIARANDLMALSRERVADELLKLLGVADPAPTVRLMHDSGIFRPIIPEID 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + +L ++I E + D+L R L+ D ++A++ L + L Sbjct: 241 GDGVARLDRLIAREAIAGTAADALRRLGALLP-PDPVIAAAIAQRLKLSKAATRRLEQA- 298 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + + L Y +G +V L L + L L + W+ Sbjct: 299 ------ASGIDDAPRALAYRFGAEVAADLL----------LRGERPAEALG-LDTLDGWE 341 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 +P P+ G +++ G+ G V L ++ WI F + L + +A + Sbjct: 342 RPRLPIGGGELIAMGLKAGPVVAATLQAIERRWIAEGFPGD-ARVAELAAEAMAQA 396 >gi|239827472|ref|YP_002950096.1| tRNA CCA-pyrophosphorylase [Geobacillus sp. WCH70] gi|259585843|sp|C5D3B5|CCA_GEOSW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|239807765|gb|ACS24830.1| Polynucleotide adenylyltransferase region [Geobacillus sp. WCH70] Length = 404 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 113/399 (28%), Positives = 181/399 (45%), Gaps = 18/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L + ++ VGGAVRD L+N + DIDIAT+ LPD VM++F KT I Sbjct: 8 ALGIIQTLQQHGYEAYFVGGAVRDLLLNREIGDIDIATSALPDEVMQLFPKT----IDIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 +GT+ ++ +++TT R++ D R V F R D RRDFT+NA+ D + Sbjct: 64 SQHGTVVVVHNGISYEVTTFRTESEYEDYRRPGAVTFVRSLYEDLQRRDFTMNAIAMDAE 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID GG + NR I +GD R ED LR++R RF G ++D + A I+ Sbjct: 124 GKLIDPFGGQEAIANRIICTVGDPKARFSEDALRMMRAIRFVGQLG-FSLDEETKQAIIE 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S ER+ E KLLE A+ + G+F ++L + ++L +A Sbjct: 183 NAALLAHISVERMTMEFEKLLEGPFASRALSLLVETGLF--LYLPMLRDKENEL----QA 236 Query: 253 EQVFEWKI--DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + W++ R+ L S + + LP + + + S Sbjct: 237 AARYNWRLLDSRGQRWGFLCYILCIDSAADFLRAWKLPNRLIKEVEMALRILQTIPSSSD 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 K+ + +G + IA I N+ +S I KK ++G+D+ Sbjct: 297 WT-KERLFEFGLEHAIAAETIRSVASGENVEEHRKKLNELFMSLPIKTKK-ELAVSGNDI 354 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K +G P G V IL ++ I+ +E +H L Sbjct: 355 MKWFGKPGGPWVKEILTLIERAVIHGEVDNHKERIHEWL 393 >gi|298292458|ref|YP_003694397.1| polynucleotide adenylyltransferase region [Starkeya novella DSM 506] gi|296928969|gb|ADH89778.1| Polynucleotide adenylyltransferase region [Starkeya novella DSM 506] Length = 408 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 130/401 (32%), Positives = 202/401 (50%), Gaps = 8/401 (1%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKVI 71 L +L+ L+ +++ IVGGAVRD L+ V+ DIDIATT P+ V R K + Sbjct: 14 PGLARVLAALDGEGEEARIVGGAVRDWLIGRGVRFDIDIATTATPEEVTRRALAAGLKAV 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 PT + +GT+ +I + +++TTLR D+ TDGR A+VVF R+W D+ RRDFT+NALY + Sbjct: 74 PTGVEHGTVTVIAEGEPYEVTTLREDVETDGRRARVVFGRNWAHDAQRRDFTMNALYLTR 133 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ID VGG D R ++FIGDA RI EDYLRILR FRF A YG+ +D D L A++ Sbjct: 134 AGELIDLVGGEADARAGRVRFIGDADVRIREDYLRILRLFRFHAAYGKGALDEDALAAAV 193 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + ++GL LS ER+ +E+ KLL A + M G+ + + + ++ E Sbjct: 194 RNREGLDRLSRERVRAEMMKLLVAPRAAETLAQMEAAGLLEPVLGRAGDART--FVRLSE 251 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E D++ R L + + ++ ++ + L L + + Sbjct: 252 VEASLAMVPDAVRRLGAL-AVRSEEDAEALREGLRLSNAEATRLAALAGPAPT-PGMCEK 309 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K Y G + + I A +L + + + W P+FPL D + Sbjct: 310 GQKAFLYRMGREAFQDRALIAFAHSGASLEDEGWRALASL---AAGWPIPVFPLKAADFI 366 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 GI PG +G L ++ WI + F + DL + + + Sbjct: 367 ARGIQPGPALGAALKRAEEAWIEAGFPMGAGDLERIAGEAV 407 >gi|302384827|ref|YP_003820649.1| Polynucleotide adenylyltransferase region [Clostridium saccharolyticum WM1] gi|302195455|gb|ADL03026.1| Polynucleotide adenylyltransferase region [Clostridium saccharolyticum WM1] Length = 406 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 105/405 (25%), Positives = 183/405 (45%), Gaps = 15/405 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ LN ++ +VGG VRDSL+ +D DI T+ P++V IF +T + T Sbjct: 10 AKRIIEQLNTNGFEAYVVGGCVRDSLLGRMPEDWDITTSAKPEQVKEIFKRT----VDTG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R D DGR+ K V FT D RRDFTINA+ + Sbjct: 66 IQHGTVTVLIDHEGYEVTTYRIDGEYEDGRHPKSVEFTGSLLEDLKRRDFTINAMAYSDR 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG DL RTI+ +G++ R ED LRILR RF A + ++ D A Sbjct: 126 EGLVDAFGGEMDLERRTIRCVGNSLDRFTEDALRILRAIRFSAQL-DFTLEEDTRAAISL 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + +S ERI E+ KLL + +P I +Y+ GI I +E ++ E Sbjct: 185 MAPNMGKVSKERIQVELTKLLLSGHPER-IKAVYDNGIAPYISPHFKEAG----RRLKET 239 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E++ + +R+ + ++ + + + K+ L + + + + + P Sbjct: 240 EKIGNLPLKKHMRWSGFLRQEEPQDAVRILKELKLDNDTIHQTKTLVSFWKMEIPADKPA 299 Query: 313 IKKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 I+ + ++ L K+F Y F ++L + +TG + Sbjct: 300 IRHVMSGLSQELFEDLLCFQKVFCPNPYQAQLTVVEQFSEEILRAGDCIRLKDMAVTGRE 359 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++ G+ PG ++G +L Q +N ++E L + Sbjct: 360 LMDAGMKPGPEMGAVLNRLFQIVLNRPECNNREYLMKSAEHFLEE 404 >gi|294011466|ref|YP_003544926.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Sphingobium japonicum UT26S] gi|292674796|dbj|BAI96314.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Sphingobium japonicum UT26S] Length = 402 Score = 312 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 133/415 (32%), Positives = 197/415 (47%), Gaps = 22/415 (5%) Query: 1 MVSI-VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 M S+ W H L +L L + + VGGAVRD L+ L V D+DIAT + P V Sbjct: 1 MTSLLPDADWRHRPGLDALLRALGAEQGLARFVGGAVRDGLLGLPVNDLDIATVLEPQSV 60 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 + K +PT I +GTI + +ITTLR D+ TDGR A + +T DW+ D+ R Sbjct: 61 IDRLKAAGIKAVPTGIDHGTITAVINGWPVEITTLRRDVSTDGRRATIAYTDDWRKDAAR 120 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINALYAD + D+ GG+ DLR ++FIGDA RI ED+LRILR+FRF A +G Sbjct: 121 RDFTINALYADPLTHAITDFFGGVADLRAHRVRFIGDAGARIAEDHLRILRYFRFLARFG 180 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 D + A +A L LS ERI E+ KLL PL ++ M +GGI + +V Sbjct: 181 HDEPDDEAYAACREAANSLMALSRERIADELLKLLALPRPLASLRLMVDGGILLPVLPEV 240 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 L +LS +I+ E + LR + + D + + + L + R L + Sbjct: 241 DHGGLARLSALIDREAA-SGTAPAALRRLAALLPPDPRVADQVGARLKLSNKARKRLATA 299 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + L + G + I ++ I D L + ++ W Sbjct: 300 LE------GAASAPPRALAFRIGVEGAIDRMLI------------DPSAPLNDMKLLVGW 341 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P PL G +++ G+ PG V L + W+ F + L + + ++ Sbjct: 342 TPPRLPLGGGALIERGLQPGPDVAKALAEVQDIWVAEGFP-DEARLSEIADQTVS 395 >gi|168180739|ref|ZP_02615403.1| polyA polymerase family protein [Clostridium botulinum NCTC 2916] gi|182668524|gb|EDT80503.1| polyA polymerase family protein [Clostridium botulinum NCTC 2916] Length = 450 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 103/435 (23%), Positives = 187/435 (42%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+++L + ++CIVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINILQENGYEACIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R +V FT + K D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +++ + K Sbjct: 137 VDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLN-FHMEESTKFNIRELSK 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ER E+ K+L + P+ I ++ + I +++ + + + V Sbjct: 196 NIANVSMERTRDELCKILVSSQPVYGIRNIVELNLMDYIIPELKACVGFEQHNIHHDKDV 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKS----------------------ILSMAKKF 285 + + + LR L+ K + K+ Sbjct: 256 YGHILSVVENVPNKLELRLAALLHDIGKPRCFSIGDNGQGHFYGHQKISADMTKDILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + Y + + + L P IKK G + ++ +A + Sbjct: 316 KFDNKTIYKVDKLVYNHMTRYNKLRTPNIKKFINKVGIDNLDDLFELQVADIKGSAKEYH 375 Query: 345 TCFIL--------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + + ++LS+ + G D++K GI G+++G +L + + Sbjct: 376 SFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGREIGIMLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|148261002|ref|YP_001235129.1| polynucleotide adenylyltransferase region [Acidiphilium cryptum JF-5] gi|146402683|gb|ABQ31210.1| Polynucleotide adenylyltransferase region [Acidiphilium cryptum JF-5] Length = 389 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 122/387 (31%), Positives = 190/387 (49%), Gaps = 20/387 (5%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD L + DID+A+ + P+ V +K + +PT + +GTI + + Sbjct: 17 EARVVGGAVRDRLAGRPISDIDLASPLPPEAVATRLAKAGIRAVPTGLDHGTITAVLDGR 76 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 +F+ITTLR DL TDGR+A V FT DW+ D+ RRDFTINA+ + G + DY GG +DL Sbjct: 77 HFEITTLRRDLETDGRHAVVAFTDDWREDAARRDFTINAMSMARDGTIHDYFGGRDDLAA 136 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++F+GD RI ED+LRILRFFRF A Y D + A K GL LS+ER+W Sbjct: 137 GIVRFVGDPTTRIQEDFLRILRFFRFHARYEAGPPDQAAVAAIRALKGGLARLSAERVWQ 196 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 EI ++L A +PL A+ M G+ + + + I ++ Q D LLR Sbjct: 197 EIKRILAAPDPLAALNLMAETGVLQVVLPEAAGI------MALQRLQTRGAPADPLLRVA 250 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 LI ++ +A++ L R L + ++ + + +I Sbjct: 251 ALIGG----AVRPLARRLRLAEAERARLEAIATAPDLAADAGEAVLRHALADWPAETLID 306 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + + D + + + ++P+FPL G D V G+ PG +G L Sbjct: 307 RSWLA----------ADDADRSALRARLATMERPVFPLKGRDAVAIGVAPGPAIGAALAA 356 Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++ W+ + LR+ +AS Sbjct: 357 VRRWWMAHDCLPDGDACRAELRRHLAS 383 >gi|291542754|emb|CBL15864.1| tRNA nucleotidyltransferase/poly(A) polymerase [Ruminococcus bromii L2-63] Length = 448 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 105/443 (23%), Positives = 195/443 (44%), Gaps = 47/443 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LN ++ IVGG VRD L+ L+ D DI T LP++ + F Y+ Sbjct: 4 NKNAEKLIRQLNNQGYEAFIVGGCVRDYLLGLTPHDTDICTNALPEQTKKCFE--AYRTF 61 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 T I +GTI ++C + ++ITT R D +D R+ V FTR+ D RRDFT+NA+ Sbjct: 62 DTGIKHGTISVVCGGEVYEITTYRIDGDYSDNRHPDSVSFTRNINEDLQRRDFTVNAMAY 121 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + + ++D GG NDL+++ I+ +G+ R ED LRILR RF + YG +I+ + + Sbjct: 122 NAEYGLVDPYGGKNDLKDKIIRCVGNPDTRFNEDALRILRALRFASVYG-FSIEENTSKS 180 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK +++ER+ SE KL+ K+ + + I ++ + + + Sbjct: 181 IFKNADLLKNIATERVISEFLKLICGKDAVKILDAYRET--IAVIIPEITVMFNFNQNNI 238 Query: 250 IEAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSIL 279 + +++ + + +LR +L+ + KK Sbjct: 239 HHSYDLWQHTLTALGTIEPNPILRMTMLLHDIGKPFVKTTDNSGQSHFQGHQLESKKIAD 298 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 + + LP + + + + S +KK+ + G + L++ A Sbjct: 299 RILHRLRLPSDFINKTLLLIEYHDVRFNGSKKLMKKVMNVLGTDLTKQLLEVEYADISAQ 358 Query: 340 LTHQDTC----------FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 +Q + +++ D +K + G DV+ G+ G+ VGNIL + Sbjct: 359 SEYQREEKLGYLETAKTHLNEIIKDNECFKLSQLDINGKDVLNLGVKEGRDVGNILDYLL 418 Query: 390 QEWINSSFQLSQEDLHHLLRKLI 412 +++S + L ++ I Sbjct: 419 MLVVDASVPNKKSILISKAKEYI 441 >gi|226949676|ref|YP_002804767.1| polyA polymerase family protein [Clostridium botulinum A2 str. Kyoto] gi|226844372|gb|ACO87038.1| polyA polymerase family protein [Clostridium botulinum A2 str. Kyoto] Length = 450 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 102/435 (23%), Positives = 187/435 (42%), Gaps = 42/435 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+++L + ++CIVGGAVRDSL+ V D DI T+ P V+ IF YK+IPT + + Sbjct: 17 IINILQENGYEACIVGGAVRDSLLERKVNDWDITTSANPQEVVNIFENLGYKIIPTGLKH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ I+ +++TT R D D R +V FT + K D RRD TINA+ + + + Sbjct: 77 GTVTILINSIGYEVTTFRIDGEYEDNRRPKEVKFTSNLKEDLKRRDLTINAMAYNDKIGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GL DL N+ I+ +G++ R ED LR+LR RF + +++ + K Sbjct: 137 VDYFHGLEDLNNKIIRCVGNSKDRFNEDSLRMLRCIRFASQLN-FHMEESTKFNIRELSK 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ER E+ K+L + P+ I ++ + I +++ + + + + Sbjct: 196 NIANVSMERTRDELCKILVSSQPVYGIRNIVELNLMDYIIPELKACVGFEQHNIHHDKDI 255 Query: 256 FEWKIDSL--------LRFIVLISWQDKKS----------------------ILSMAKKF 285 + + + LR L+ K + K+ Sbjct: 256 YGHILSVVENVPNKLELRLAALLHDIGKPRCFSIGDNGQGHFYGHQKISADMTKDILKRL 315 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + Y + + + L P IKK G + ++ +A + Sbjct: 316 KFDNKTIYKVDKLVYNHMTRYNKLRTPNIKKFINKVGIDNLDDLFELQVADIKGSAKEYH 375 Query: 345 TCFIL--------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + + ++LS+ + G D++K GI G+++G +L + + Sbjct: 376 SFDNVLNLKIKCEKILSEKQPLTIKDLDINGYDLMKLGINQGREIGIMLNKLLDIILENP 435 Query: 397 FQLSQEDLHHLLRKL 411 ++EDL ++ + Sbjct: 436 NLNNKEDLIKIVESI 450 >gi|332186789|ref|ZP_08388531.1| poly A polymerase head domain protein [Sphingomonas sp. S17] gi|332013122|gb|EGI55185.1| poly A polymerase head domain protein [Sphingomonas sp. S17] Length = 383 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 137/415 (33%), Positives = 204/415 (49%), Gaps = 33/415 (7%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ W DLI + + L ++ VGGAVRDSL+ +V DID+AT + P+ V+ Sbjct: 1 MNPATAPWADRRDLIALAATL-----EARFVGGAVRDSLLGHAVADIDLATPLSPETVIA 55 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + +K +PT I++GTI + ++TTLR D+ TDGR+A V FT DW+ D+ RRD Sbjct: 56 RVRDSGFKPVPTGIAHGTITAVLPDGPVEVTTLRRDVSTDGRHAVVAFTDDWREDAARRD 115 Query: 122 FTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALYAD + G + DY GGL+DL+ ++FIGD RI ED+LRILRFFRF A +G + Sbjct: 116 FTMNALYADPETGALFDYFGGLDDLKAGRVRFIGDPLQRIAEDHLRILRFFRFHARFG-Q 174 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ID GL A L LS ERI +E+ KLL A + I M GI + + ++ Sbjct: 175 AIDEAGLAACTARANDLMALSRERIAAELLKLLVAPGAVPVIALMVERGILRAVLPEIDA 234 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 ++L+ + E EQ D + R L+ ++ ++ + L R LI+ Sbjct: 235 AGAERLAMLAEREQAAGIAADPIRRLAALLP---PQTAEAVGARLKLSNVDRKRLIAA-- 289 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + L Y G + I +L + + + I W Sbjct: 290 ----TAGPGEEGPRALAYRVGIEGAIDRLLLAG----------------ETVEAIRDWTP 329 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 P PLTG +V GI G +V +L + WI F + + L +A + Sbjct: 330 PSLPLTGGALVARGIGKGPEVARLLRQVETRWIAEGFP-GEARVAELADAAVAQA 383 >gi|99082731|ref|YP_614885.1| polynucleotide adenylyltransferase region [Ruegeria sp. TM1040] gi|99039011|gb|ABF65623.1| Polynucleotide adenylyltransferase region [Ruegeria sp. TM1040] Length = 386 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 121/409 (29%), Positives = 185/409 (45%), Gaps = 28/409 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W H + L + VGG VR++L+ V D+D++T+ P V Sbjct: 3 IDEPWLHSPATRKLCDALTSAGAEIYFVGGCVRNALLGEPVSDLDLSTSATPQYVTEAAE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + KVIPT I +GT+ ++ F+ITT R D+ TDGR A V F + D+ RRDFT+ Sbjct: 63 QAGLKVIPTGIEHGTVTVVVDGDPFEITTFRRDVATDGRRAVVAFATEILEDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G+++D + G DLR R ++FIGDA RI EDYLRILR+FRF + YG+ Sbjct: 123 NALYARPTGEIVDPLSGFEDLRARRVRFIGDATRRIQEDYLRILRYFRFHSWYGDAEAGF 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + L A ++GL LS ER+ +EI KLL + NP ++ M G+ + + + Sbjct: 183 DPEALAAIAATQEGLDHLSRERVGAEIMKLLSSSNPAPSVATMRQIGVLAHVLPGADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + + ++ R L + L + + Sbjct: 243 LAPLIHLEA-----DLPAEAETRLAAL-------GGEDLQNTLRLSKASAARVTLLRTLA 290 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 T + ++ Y G + + AL + + + SDI Sbjct: 291 TGTATAA-----EIAYRQGVDTAKRAMMLRSALF-------EMPVLPDLESDIALGAVAE 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 FP++ D++ + G +G L + EWI S FQ +E L L L Sbjct: 339 FPISAKDLMPH--VQGAALGRALRTLEAEWIRSGFQSDRETLLKRLPDL 385 >gi|289741975|gb|ADD19735.1| tRNA nucleotidyltransferase/poly polymerase A [Glossina morsitans morsitans] Length = 474 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 208/409 (50%), Gaps = 17/409 (4%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ + + +L ++S+ +K + + GGAVRD LM ++ +D+D ATT P+++ Sbjct: 54 LNTPEFRSIFTDELKTLVSIFSKYNYELRVAGGAVRDILMEITPKDVDFATTATPEQMKE 113 Query: 62 IFSKTRYKVI-PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F+ + ++I P +GTI + K+ F++TTLR D++TDGR+A+V FT DW+ D+ R Sbjct: 114 MFTLEKIRMINPKGEKHGTITVRIGDKENFEVTTLRIDVVTDGRHAEVQFTTDWQLDANR 173 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G + DY G DL+ R +KF+GDA+ RI ED+LRILR+FRF+ Sbjct: 174 RDLTINSMFLGFDGTLYDYFYGYEDLQQRRVKFVGDANTRIKEDFLRILRYFRFYGRIAP 233 Query: 180 KN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + D L A GL +S ERIW E+ K+L ++ M N G+ L Sbjct: 234 EADRHDELTLKAIRANAHGLAKISGERIWGELQKMLLGNYSEEIMLEMINSGLVVYCGLP 293 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 ++ L + ++ A + FE +L I L+ + + M ++ R ++ Sbjct: 294 LRPNVL-EFKRLCLALKDFEKPHKPILFMISLVH--SVEDAIKMHERLKFSAFERD--LA 348 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 FF +K + + + I + + L Y ++ ++ Sbjct: 349 FFITQQREKVDECYVSLRDYQKLCLQAYIRRDFVEELLKY--------KHKRELYDNLRS 400 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 W+ P FP+ G+ + P +K+G +L K W +++FQLS+E+L Sbjct: 401 WEVPPFPVNGNILKDRASIPTRKIGLVLAQLKLIWADNNFQLSREELLE 449 >gi|163814964|ref|ZP_02206351.1| hypothetical protein COPEUT_01114 [Coprococcus eutactus ATCC 27759] gi|158449647|gb|EDP26642.1| hypothetical protein COPEUT_01114 [Coprococcus eutactus ATCC 27759] Length = 443 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 109/441 (24%), Positives = 179/441 (40%), Gaps = 50/441 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ L ++ IVGG VRDS++ D DI T+ P++V IF +T I Sbjct: 7 EGANRVIEGLEAAGYEAYIVGGCVRDSILGRLPGDWDITTSARPEQVKEIFRRT----ID 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ K+ +++TT R D +D R +V FT + D RRDFTINA+ Sbjct: 63 TGIEHGTVTVMMGKEGYEVTTYRIDGEYSDHRRPDQVEFTASLEEDLKRRDFTINAMAYS 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +ID GG+ DL ++ I+ +G A R ED LRILR RF G +I+ D A Sbjct: 123 HSKGIIDMFGGVQDLNDKVIRAVGVARDRFDEDALRILRAIRFAGQLG-FDIERDTRKAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248 I + LK +S+ERI E+ KLL + +P + Y GI I + ++ + Sbjct: 182 IIQAQYLKNISAERIRVELTKLLVSDHPDKLLEA-YVTGITSYILPEFDKMMEQPQNNPY 240 Query: 249 ------VIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------------ILS 280 V E V + D +R+ L+ K + S Sbjct: 241 HRYNVGVHSIEAVKNIRPDVTMRWAALLHDVGKPATHTVDENGIDHFFDHPEKGVPIAES 300 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPE--IKKLFYLYGDKVMIAKLKIFLALHYN 338 + ++ + + + + I+KL G ++I A Sbjct: 301 ILRRLKFDNNTIKDVCTLVRWHDYGMGSVPKKGSIRKLLGEVGKDFFPYIIEIKKADMVA 360 Query: 339 NLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + Q+ + + + + G D++K GI PG ++G IL Sbjct: 361 QSDYNLEERQSQLAALEKKYEEIMASDDCVRIKDLKINGGDLIKMGIKPGPQMGEILQKL 420 Query: 389 KQEWINSSFQLSQEDLHHLLR 409 I + +E L ++ Sbjct: 421 LDMVIEDPEKNDREYLIEQVK 441 >gi|210613802|ref|ZP_03289916.1| hypothetical protein CLONEX_02127 [Clostridium nexile DSM 1787] gi|210151011|gb|EEA82019.1| hypothetical protein CLONEX_02127 [Clostridium nexile DSM 1787] Length = 465 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 197/450 (43%), Gaps = 48/450 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K F + I++ L + ++ VGG VRDS++ D DI T+ P+ +F +T Sbjct: 20 KIFLPEKVNFIINKLKENGYEAYAVGGCVRDSVLGRVPDDWDITTSATPNETKALFRRT- 78 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTIN 125 T I +GTI ++ K+ F++TT R D D R+ +VVFTR K D LRRDFTIN Sbjct: 79 ---FDTGIEHGTITVLVDKEAFEVTTYRVDGEYEDSRHPREVVFTRSLKEDLLRRDFTIN 135 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ +++ ++D GG+ DL+ + I+ +G+A R ED LRILR RF A G + I+ + Sbjct: 136 AMAYNEEEGLVDIFGGIEDLQRKMIRCVGNARERFGEDALRILRAVRFAAQLGFR-IEDE 194 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + K L +S+ERI E+ K+L + NP + Y GI K + + E+ Sbjct: 195 TMEGIRKLAPTLANISAERIQVELVKMLVSPNPGL-LALSYELGITKVVLPEFDEMMRTG 253 Query: 246 LS--------QVIEAEQVFEWKIDSLLRFIVLISW----------------------QDK 275 + + V + + D +LR +L+ + Sbjct: 254 QETPHHMYSVGMHTLKAVEQVRADKVLRLTMLLHDVAKPQMKTVDADGVAHFKMHDVKGA 313 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA- 334 + + K+ + + + + +++ G+++ L+I A Sbjct: 314 EVAKRILKRLKFDNDTLGKVTKLVQYHDYRMPAQPKNVRRAMNKIGEELFPYYLEIRKAD 373 Query: 335 -----LHYNNLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPPGKKVGNIL 385 + + I + +I+ K+ + ++G D++ G+ PGK++G +L Sbjct: 374 TMAQSEYMREEKLSNIAGIERCYKEILKKKECVSLKMLAVSGSDLIADGMQPGKQIGAVL 433 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + I ++E L RKL + Sbjct: 434 QALLELVIEQPEYNTKEILLEQSRKLRKET 463 >gi|328542784|ref|YP_004302893.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [polymorphum gilvum SL003B-26A1] gi|326412530|gb|ADZ69593.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Polymorphum gilvum SL003B-26A1] Length = 410 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 127/410 (30%), Positives = 207/410 (50%), Gaps = 7/410 (1%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S+ W + + L + D++ VGGAVR++L+ + V D+DIATT P VM Sbjct: 1 MRSLSDAPWLTAQSIQQVFEALEQDGDEARAVGGAVRNTLLGVPVADVDIATTAEPATVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT I +GT+ ++ +++TTLR D+ T GR+A V F RDW D+ RR Sbjct: 61 KRALAHGLKPVPTGIDHGTVTVVSSGIAYEVTTLREDVETFGRHAVVRFGRDWSHDARRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFT+NALY D+ G++ D +GG D R ++FIGDA RI EDYLRILRFFR A YG Sbjct: 121 DFTMNALYVDRHGRIDDPIGGYEDCLARRVRFIGDAAERIREDYLRILRFFRIHAAYGVG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D DGL A+I+A+ GL+ LS+ER+ E+ +L+ I M + GI + + V Sbjct: 181 QPDPDGLHAAIRARDGLRRLSAERVGMEVKRLVTTAGAPGVIRLMESCGILEIVTGGVGR 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 + + ++V ++ + + L S ++ + + +F L R ++ Sbjct: 241 LV--DFEALRRLDRVAPEAQEAPVCLVAL-SGFVEEDLDRLVSRFRLSNAERERMMRAHR 297 Query: 301 CNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 I+ + + G + I + A + +L +W Sbjct: 298 AAAQLAHGADERGIRGVLFTDGRQPAIDGALLAWARSGGEAYDE---TWKSLLGLARNWP 354 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P+FP+ G D++K G+ G +G +L + +++S + +++EDL L Sbjct: 355 IPMFPVGGRDLLKQGVAAGPALGAVLARLRAAFMDSDYTMTREDLLRLAE 404 >gi|240144360|ref|ZP_04742961.1| polyA polymerase family protein [Roseburia intestinalis L1-82] gi|257203611|gb|EEV01896.1| polyA polymerase family protein [Roseburia intestinalis L1-82] Length = 446 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 97/443 (21%), Positives = 177/443 (39%), Gaps = 44/443 (9%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K + I+ L ++ VGG VRD++++ + D DI T P++V IF++ Sbjct: 2 KIVLPEKVKFIIETLETHGYEAYAVGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKN 61 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTIN 125 I T I +GT+ ++ + F++TT R D D R+ K V FT D RRDFTIN Sbjct: 62 IHTIDTGIQHGTVTVMVEHEGFEVTTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTIN 121 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ + + +ID G+ DL I+ +G A R ED LR+LR RF A G +I+++ Sbjct: 122 AMAYNDKNGLIDAFDGVGDLERGVIRCVGCAMERFSEDALRMLRAVRFAAQLG-FDIEAE 180 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A +K + +S+ERI +E+ KL+ + +P I + G+ + + Sbjct: 181 TKEAMVKLAPNIAKVSAERIQTELVKLITSAHPGE-IRTAWETGLTAVFLPEFDRMMATP 239 Query: 246 LSQVIEAEQVFEWKI--------DSLLRFIVLISW----------------------QDK 275 + V E + D +LR +L+ + Sbjct: 240 QNTKHHCYSVGEHTVAALEHIVGDKVLRLTMLLHDVAKPVCRTTDVSGNDHFYGHPKEGS 299 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 + + ++ + + + + LS +++ G + A + A Sbjct: 300 EMARKILRRLKFDNDTTDKVCRLVCWHDDNPPLSEKNVRRAVSRIGVEQYPALFAVKRAD 359 Query: 336 HYNNLTHQD----------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 +Q ++L + G D++ G+ PGK++G L Sbjct: 360 ILAQSEYQREEKLSYVDGYEALYREILEKNQCLTIRDLAVNGSDLIAAGMKPGKEIGETL 419 Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408 + ++ ++E L + Sbjct: 420 KSLLELVLDDPELNNRELLLERI 442 >gi|258542072|ref|YP_003187505.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01] gi|256633150|dbj|BAH99125.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01] gi|256636207|dbj|BAI02176.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-03] gi|256639262|dbj|BAI05224.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-07] gi|256642316|dbj|BAI08271.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-22] gi|256645371|dbj|BAI11319.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-26] gi|256648426|dbj|BAI14367.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-32] gi|256651479|dbj|BAI17413.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654470|dbj|BAI20397.1| poly(A) polymerase [Acetobacter pasteurianus IFO 3283-12] Length = 397 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 17/381 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGGAVRD ++ S+ DID+A P+ VM+ V+PT +++GT+ + Sbjct: 26 EARLVGGAVRDLMVGRSIADIDLAVPQPPEEVMQRLKAQGMTVVPTGLAHGTVTAVIDSA 85 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++ITTLR D+ TDGR+A V +T +W+ D+ RRDFTINA+ D G V DY G +DL N Sbjct: 86 PYEITTLRRDVETDGRHAVVCWTDNWQEDAARRDFTINAMSCDSTGTVHDYFDGQHDLAN 145 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 +++F+GDA RI ED LRILRFFRF+ YG D+ + A + L LS ERIWS Sbjct: 146 GSVRFVGDATLRIQEDALRILRFFRFWGRYGRGQADAQAMHAITTQAELLNGLSVERIWS 205 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ ++L L+ + M GI + + + V Q+ + + Sbjct: 206 ELKRILAGPKALDVVYMMQQAGILPVLLPEG--------AHVPVFAQLMAFNSPADALLR 257 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 + DK + MA++ R L + + +S +++ L ++ A Sbjct: 258 LAALVPDKSA--DMARRLKFSRAEAARLKAMQDEPVPLPDMSDAQLRHLLADTSPDILAA 315 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + ++ A H + L + + + + P+FPL G D++ G PG VG +L Sbjct: 316 RSWLYQARHADVLGTE-------LRQRLARLEIPVFPLAGRDLLDAGCQPGPHVGQVLKD 368 Query: 388 CKQEWINSSFQLSQEDLHHLL 408 + W ++ Sbjct: 369 VRNWWQQGGCTADKQTCLAHA 389 >gi|160941553|ref|ZP_02088885.1| hypothetical protein CLOBOL_06451 [Clostridium bolteae ATCC BAA-613] gi|158435518|gb|EDP13285.1| hypothetical protein CLOBOL_06451 [Clostridium bolteae ATCC BAA-613] Length = 442 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 106/437 (24%), Positives = 185/437 (42%), Gaps = 58/437 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I++ LN+ ++ +VGG VRD L+ D DI T+ LP++V +F +T + T Sbjct: 15 AEEIINKLNEHGYEAYVVGGCVRDMLLGREPGDWDITTSALPEQVKEVFRRT----VDTG 70 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ K+ +++TT R D +DGR+ V FT D D RRDFTINA+ + Sbjct: 71 IQHGTVTVMMGKEGYEVTTYRIDGEYSDGRHPNSVEFTPDLVEDLKRRDFTINAMAYNSH 130 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +D GG+ DL I+ +G+ R ED LRILR RF A G +I+ A Sbjct: 131 TGFVDKFGGVEDLEKGIIRCVGEPMDRFTEDALRILRAIRFSAQLG-FSIEERTYEAIKV 189 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + +S ERI E+ KLL + +P + I +Y GI + ++ A Sbjct: 190 IAPNMVHVSKERIQVELTKLLLSSHP-DYISLVYETGISPFV--------SEKFHGAYAA 240 Query: 253 EQVFEWKIDSL---------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN- 302 + +W + S+ +R+ + + K L + Y + + Sbjct: 241 DSG-DWAVPSIPAGVPAVKHMRWAAFLRECSASQAAGILKDLKLDNDTSYRVRTLVEWQG 299 Query: 303 ------------------------FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 Q S I++ ++ L + + L + Sbjct: 300 KKVGAEDGEKDCLKHGKEEGMKEIAKQPEPSRASIRRAMSQMEPELFDDLLTLKMCLSED 359 Query: 339 NLTHQDTCFILQV--LSDIIHWKKPL-----FPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 +++ ++ QV L++ I + ++G D++ G+ PG++VGN L Sbjct: 360 ASDDRESQWLCQVRDLTEEIRSNRDCISLKTLAVSGHDIMGAGVKPGREVGNTLARLLDM 419 Query: 392 WINSSFQLSQEDLHHLL 408 + + ++E L L Sbjct: 420 VLEEPQRNTKEYLLAHL 436 >gi|149912910|ref|ZP_01901444.1| polyA polymerase family protein [Roseobacter sp. AzwK-3b] gi|149813316|gb|EDM73142.1| polyA polymerase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 127/387 (32%), Positives = 190/387 (49%), Gaps = 26/387 (6%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 ++ ++ VGG VR+SL+N V DIDIAT P+ V+R+ K +PT + +GT+ Sbjct: 1 MIEDAGHQALFVGGCVRNSLLNKPVSDIDIATDAHPETVIRLAEAAGLKPVPTGLDHGTV 60 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 ++ ++TT R D+ T GR+A V ++ D D+ RRDFT+NALYA G ++D +G Sbjct: 61 TVVSDHVPHEVTTFREDVETYGRHAVVAYSDDVMQDARRRDFTMNALYARPDGMLVDPLG 120 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLK 198 GL+DL+ R ++FI D + RI EDYLRILRFFRF A YG + +D+DGL A + GL Sbjct: 121 GLSDLKARRVRFIDDPNQRIREDYLRILRFFRFHAWYGDPDMGLDADGLAAVSEHVDGLA 180 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER SEI KLL A +P ++ M G+ + + +L L + EQ+ Sbjct: 181 GLSRERTGSEIVKLLTAPDPAPSVAAMRACGVLAAVLPGSDDRALAPL---VHLEQIAGL 237 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 + + + R L +A + L + L K +L Y Sbjct: 238 EPEPMRRLSSLGGDM-------VASRLRLSKAQSKRLDLLLAEAALAKPPM-----ELGY 285 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 YG + + + AL ++ F V + FP+T D++ G Sbjct: 286 RYGIDPGLDIVVLRHAL-------LESPFDSAVRQIMEQASHAKFPVTPHDLMSE--YSG 336 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLH 405 +G L +Q WI S F L +EDL Sbjct: 337 PALGRRLSELEQRWIESGFSLGREDLL 363 >gi|251782231|ref|YP_002996533.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390860|dbj|BAH81319.1| poly(A) polymerase/tRNA nucleotidyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127083|gb|ADX24380.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 402 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 108/404 (26%), Positives = 191/404 (47%), Gaps = 18/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILNKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL + ++ +G+A R ED LRI+R FRF A + +I+S A Sbjct: 129 GQVIDKFTGLQDLEQKRLRAVGEAADRFEEDALRIMRGFRFAASL-DFDIESATFEAMKS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L +S ER + E +KLL A + I+ M + + L QEI+L QL+ + Sbjct: 188 HSLLLAKISVERSFIEFDKLLMAPHWRKGILAMIACQAYDYLPGLGQQEIALKQLTVSLA 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F + I+ +S Q+ K L K + + + + ++ Sbjct: 248 DDFTFSDHHQAWAYLIISLSIQNPKPFL---KAWKTSNDFQRCVAQLVTLYHIRQERPFE 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG K+ ++ +L D +I Q+ + K + G ++ Sbjct: 305 KLD--IYQYGKKLA----RLIESLRQAMGQDVDMAYIEQLDQALAIHDKHDIVVNGSHLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K +G+ PG ++G IL + + + + +R+ +A+ Sbjct: 359 KNFGLKPGPELGVILERIELAIVEGHLANELDAIEAFVREELAT 402 >gi|313905494|ref|ZP_07838858.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Eubacterium cellulosolvens 6] gi|313469678|gb|EFR65016.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Eubacterium cellulosolvens 6] Length = 461 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 101/442 (22%), Positives = 185/442 (41%), Gaps = 48/442 (10%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L L+ ++ VGG VRDS++ QD DI T+ P++V IF +T I T I Sbjct: 13 TVLDSLHAAGYEAYAVGGCVRDSILGRKPQDWDITTSARPEQVKEIFDRT----IDTGIQ 68 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ R ++TT R D TD R+ + V FT D RRDFTINA+ + + Sbjct: 69 HGTVTVMIRGNQHEVTTYRMDGEYTDCRHPEEVTFTSSLAEDLKRRDFTINAMAYNDREG 128 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG+ DL+ I+ +GD R ED LRI+R RF A + ID L A Sbjct: 129 LVDLYGGVEDLQRHVIRCVGDPMERFGEDALRIMRAVRFSAQL-DFGIDEKTLEAVRTLA 187 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L +S+ERI E+ KL+ + +P + Y GI K I + + + + Sbjct: 188 PNLSKISAERICMELTKLIVSDHP-EYLRLAYETGITKIILPEFDAMMETEQNNPHHMYN 246 Query: 255 VFEW--------KIDSLLRFIVLISW--------QDKKSILSMA--------------KK 284 V + K D +LR +L+ D++ + ++ Sbjct: 247 VGDHTLAAMKAVKADRILRLALLLHDIAKPVCKTTDEEGVDHFCGHGNAGAEMAGRIMRR 306 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + + + + S ++++ G+++ + + A Q Sbjct: 307 LKMDNDTIRRVKTLVTYHDWRPEPSDKLVRRMINKVGEELFPLLICMQEADTRAQSEWQR 366 Query: 345 TCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 + ++ ++ + G D+++ G+ G ++G +L +E + Sbjct: 367 DEKLRKIAQIKSIGERIFAEGQCVNLKSLAIGGGDLLQMGVEKGPEIGRLLHLALEEVLE 426 Query: 395 SSFQLSQEDLHHLLRKLIASSQ 416 + L ++K + S + Sbjct: 427 EPAHNEKAYLTAFVQKELGSKE 448 >gi|182679758|ref|YP_001833904.1| polynucleotide adenylyltransferase region [Beijerinckia indica subsp. indica ATCC 9039] gi|182635641|gb|ACB96415.1| Polynucleotide adenylyltransferase region [Beijerinckia indica subsp. indica ATCC 9039] Length = 417 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 133/409 (32%), Positives = 199/409 (48%), Gaps = 5/409 (1%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I ++ N +++ IVGG+VR++L V + D ATT LP+ + Sbjct: 13 ALLAHKGVERIFAIFNGAGEETRIVGGSVRNALAGQHVHEFDFATTALPEIIQARAEAAG 72 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K IPT I +GTI I+ + F+ITTLR D+ TDGR A V F RD++ D+ RRDFTINAL Sbjct: 73 LKYIPTGIEHGTITILAGGESFEITTLRKDVETDGRRAIVRFGRDFEEDAHRRDFTINAL 132 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 DQ G + DY GGL DL ++FIG A RI EDYLRILR FRF A + +D++GL Sbjct: 133 SMDQHGTLYDYTGGLADLAAGRVRFIGAARQRIREDYLRILRLFRFSADFAGGRLDAEGL 192 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A+I+ ++GL+ LS+ERI +E+ KL+ K + G+F + V + S +L+ Sbjct: 193 DAAIREREGLRRLSTERIRAELLKLMGGKRVAEVAYEIAEAGLFTPLLPLVPQPS--RLN 250 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 + I E E D LLR L + ++++ ++ SL L + Sbjct: 251 RFITIET--EATQDPLLRLAALFT-MVRENVTALRVHLSLSNAETTRLDHAVTLASSLHA 307 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 L+ P + L L + + KP P +G Sbjct: 308 LAEPPSEPAMRALLLHRSHQTLDDAFVLTQAGAPAALGAAWASARARLRTLPKPKLPFSG 367 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 D++ GI PG +G L ++ WI + F E L LL ++ + + Sbjct: 368 ADLIARGISPGPGMGEALQRLEKAWIAAGFPEDSESLAALLDRIAPARR 416 >gi|154484258|ref|ZP_02026706.1| hypothetical protein EUBVEN_01970 [Eubacterium ventriosum ATCC 27560] gi|149734735|gb|EDM50652.1| hypothetical protein EUBVEN_01970 [Eubacterium ventriosum ATCC 27560] Length = 457 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 108/442 (24%), Positives = 195/442 (44%), Gaps = 51/442 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ +L ++ VGG VRD++++ QD DI T+ LP++V +F++T + T I + Sbjct: 21 IIDVLENNGYEAFAVGGCVRDTILDREPQDWDITTSALPEQVKELFNRT----LDTGIQH 76 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT R D D R+ + V FT + D RRDFTINA+ +++ + Sbjct: 77 GTVTVMIKHVGYEVTTYRIDGEYNDSRHPESVEFTSNLIEDLKRRDFTINAMAYNEREGL 136 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ND+ N+ I+ +G+ R ED LRILR RF A G +ID + A K Sbjct: 137 VDAFDGINDINNKIIRCVGEPEERFGEDALRILRAVRFSAQLG-FDIDEKTMEAIKKLAP 195 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L+ +S+ERI +E+ KL+ +KNP ++ YN GI K I + + + + V Sbjct: 196 TLENISAERIKTELEKLIISKNPCK-LITAYNAGITKVILPEFDAMMECEQNTPYHMYNV 254 Query: 256 FEWKI--------DSLLRFIVLISWQDKKSIL----------------------SMAKKF 285 E I D L+R+ L K + + ++ Sbjct: 255 GEHTIKVMENVSADKLMRWTALFHDVAKPLVKTTDANGRNHFKGHALEGSRLAPQIMRRL 314 Query: 286 SLPREIRYFLISFFNCNFNQ---KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 + + C+ ++ K + I++ + G + L++ A + Sbjct: 315 KMDNKTIKTASRLIECHDDRPASKGFNPEAIRRSVHKIGKDIYHNYLELVYADFMGKSKY 374 Query: 343 QDTCFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 + + I +TG D++ G P G+K+G L + Sbjct: 375 GKDEGYDAYVYVCKQYEYIMENNICTSTKELAITGKDLIALGCPLGEKIGRALDELLEIV 434 Query: 393 INSSFQLSQEDLHHLLRKLIAS 414 + + +++ L+ K+I S Sbjct: 435 LKEPEKNTKDKLYVEAEKIIKS 456 >gi|302672263|ref|YP_003832223.1| tRNA nucleotidyltransferase Cca [Butyrivibrio proteoclasticus B316] gi|302396736|gb|ADL35641.1| tRNA nucleotidyltransferase Cca [Butyrivibrio proteoclasticus B316] Length = 447 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 103/436 (23%), Positives = 188/436 (43%), Gaps = 48/436 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL +++ ++ +VGG VRD+++ D DI T LP + ++F +T I Sbjct: 7 DNAKTILDTIHEAGFEAYVVGGCVRDAVLGRVPGDWDITTNALPQDIKKLFRRT----ID 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ K+ +++TT R D D R+ +V FT++ D RRDFTINA+ + Sbjct: 63 TGIEHGTVTVMMGKEGYEVTTYRIDGKYEDNRHPSEVTFTKNLTEDMKRRDFTINAMAYN 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ +ID GGL D+ I+ +GD + R ED LRI+R RF A G I+ A Sbjct: 123 EEEGLIDRFGGLEDIEKGLIRCVGDPYERFSEDALRIMRAIRFSAQLG-YTIEDKTCEAI 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S+ERI E+ KLL + +P I Y GI + I + + + + Sbjct: 182 KELSGTLEKISAERIQVELVKLLLSDHPDK-IRQAYELGITRVILPEFDACMETEQNNIH 240 Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDK----------------------KSILS 280 A V E + D +LR +L+ K + + Sbjct: 241 HAYSVGEHIIQTLLNIRADRVLRLTMLMHDMAKPVTMTVDEEGVSHFKGHDIKGVEMARN 300 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 + ++ R+ + + + + +++ G L++ A Sbjct: 301 IFRRLKFDRDTMDKACNLIRYHDYRFPATARNVRRAMNKVGADAFPLFLEVRYADTMAQS 360 Query: 341 THQDTCFILQ------VLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 ++ + Q + +I + + + G D++ G+ PGKK+G +L Sbjct: 361 EYKREEKLRQIEETRLLYEEIKAKNECVTLGSLAVNGRDLISLGVAPGKKIGEVLEKMLM 420 Query: 391 EWINSSFQLSQEDLHH 406 + I+ ++E L Sbjct: 421 DVIDDPEHNTREYLLE 436 >gi|307199467|gb|EFN80080.1| tRNA-nucleotidyltransferase 1, mitochondrial [Harpegnathos saltator] Length = 433 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 121/411 (29%), Positives = 210/411 (51%), Gaps = 20/411 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 S+L +++L K + + I GGAVRD LMN +D+D ATT PD++ +F K + Sbjct: 26 LFTSELNILVNLFQKYDYELRIAGGAVRDILMNKYPKDLDFATTATPDQMKEMFEKEEIR 85 Query: 70 VIPT-SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++ +GTI K+ F++TTLR D ITDGR+A+V FT+DWK D+ RRD TIN++ Sbjct: 86 ILNVKGEKHGTITARINDKENFEVTTLRIDNITDGRHAEVEFTKDWKLDACRRDLTINSM 145 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSD 185 + D GK+ DY G +DL+N+ + F+G+ + RI EDYLRILR+FRF+ + D Sbjct: 146 FLDFNGKLYDYFYGYDDLKNKKVIFVGNVNTRICEDYLRILRYFRFYGKIMDSPDQHDEA 205 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + A GL+++S ERIWSE K+L K L + M G K + L + +++ Sbjct: 206 TIKAIKDNVNGLQLISGERIWSEWYKILTGKFALELTLKMLECGCGKYMGLP-ENPNIEN 264 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISFFNCN 302 V + + + + ++ +D++ ++ + + L R++ FL+ + C Sbjct: 265 FQIVCRRASSNDVALKPISMIVPML--KDEQEVMDVHGRLKLSNADRDLALFLVRYRECT 322 Query: 303 FNQKTLSIPEIKKLFYLYG-DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + ++L + ++ + + + L Y +++L + W P Sbjct: 323 HIPCERPLKPYQQLVFTQQTNRYDVYREYVKEILKYQGA--------MELLDEFEKWVIP 374 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 FP+ G + +P K +G ++ K+ WIN F+ + +L + +I Sbjct: 375 KFPINGIMLKDL-VPHPKMIGKVITELKKIWINDDFKNTNSELIDHVPCII 424 >gi|291535589|emb|CBL08701.1| uncharacterized domain HDIG [Roseburia intestinalis M50/1] Length = 446 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 97/443 (21%), Positives = 177/443 (39%), Gaps = 44/443 (9%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K + I+ L ++ VGG VRD++++ + D DI T P++V IF++ Sbjct: 2 KIVLPEKVKFIIETLETHGYEAYAVGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKN 61 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTIN 125 I T I +GT+ ++ + F++TT R D D R+ K V FT D RRDFTIN Sbjct: 62 IHTIDTGIQHGTVTVMVEHEGFEVTTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTIN 121 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ + + +ID G+ DL I+ +G A R ED LR+LR RF A G +I+++ Sbjct: 122 AMAYNDKNGLIDAFDGVGDLERGVIRCVGCAMERFSEDALRMLRAVRFAAQLG-FDIEAE 180 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A +K + +S+ERI +E+ KL+ + +P I + G+ + + Sbjct: 181 TKEAMVKLAPDIAKISAERIQTELVKLITSAHPGE-IRTAWETGLTAVFLPEFDRMMATP 239 Query: 246 LSQVIEAEQVFEWKI--------DSLLRFIVLISW----------------------QDK 275 + V E + D +LR +L+ + Sbjct: 240 QNTKHHCYSVGEHTVAALEHIVGDKVLRLTMLLHDVAKPVCRTTDASGNDHFYGHPKEGS 299 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 + + ++ + + + + LS +++ G + A + A Sbjct: 300 EMARKILRRLKFDNDTTDKVCRLVCWHDDNPPLSEKNVRRAVSRIGVEQYPALFAVKRAD 359 Query: 336 HYNNLTHQD----------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 +Q ++L + G D++ G+ PGK++G L Sbjct: 360 ILAQSEYQREEKLSYVDGYEALYREILEKNQCLTIRDLAVNGSDLIAAGMKPGKEIGETL 419 Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408 + ++ ++E L + Sbjct: 420 KSLLELVLDDPELNNRELLLERI 442 >gi|295102217|emb|CBK99762.1| tRNA nucleotidyltransferase/poly(A) polymerase [Faecalibacterium prausnitzii L2-6] Length = 403 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 97/407 (23%), Positives = 172/407 (42%), Gaps = 13/407 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L L++ + VGG VRDSL+ L+ D D+ T P++VM +F + + I Sbjct: 6 EPGASALLDALHRAGFAAYAVGGCVRDSLLGLAPHDWDLCTAARPEQVMELFGEK--QCI 63 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 PT + +GT+ + + ++ITT R++ +DGR+ V F D + D RRDFTINA+ Sbjct: 64 PTGLQHGTVTVKRDGRLYEITTFRTEGSYSDGRHPDSVAFVPDVREDLARRDFTINAMAY 123 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + + D GG DL ++ +G+ R ED LRILR +RF A +G ID A Sbjct: 124 SAEEGLCDPFGGQEDLARGVVRAVGEPLRRFEEDALRILRLYRFAARFG-FVIDETTEAA 182 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + + L +S ERI E+NKLL A P + + + ++ L + ++ Sbjct: 183 AKQLAAHLDCVSVERIEEELNKLLSAPKPGAYL----EPEVLAFVLPELPPDYLSEAREI 238 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 I+A ++ + R+ L+ + K+ + + + + Sbjct: 239 IDALPAGGEEVTT--RWAALLLPLGEDGTRKALKRLKCSNAVIDGVSTLVKEKAPRTPAL 296 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH--QDTCFILQVLSDIIHWKKPLFPLTG 367 + K+L Y + ++ AL + + + + G Sbjct: 297 SLQAKRLLGKYCLHTVRQLTALWSALRPERKDEFTALQKEAETLTAQSACCRVSQLAVNG 356 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 D++ G+ PG + L +E I + +L K A+ Sbjct: 357 RDLMAAGVAPGPGLRRALEALLEEVITGRLPNKKAELLAFAAKFSAA 403 >gi|85706914|ref|ZP_01038004.1| Poly A polymerase family protein [Roseovarius sp. 217] gi|85668525|gb|EAQ23396.1| Poly A polymerase family protein [Roseovarius sp. 217] Length = 381 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 131/403 (32%), Positives = 198/403 (49%), Gaps = 26/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W + +L+ ++ VGG VR++L+ +V DIDIAT P+ VM + + Sbjct: 3 VSGAWIEAEATQAVCRMLSGAGHQALFVGGCVRNALLGETVADIDIATDARPEVVMDLAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GTI ++ ++TT R D+ T GR+A V F+ D +D+ RRDFT+ Sbjct: 63 AAGLKPVPTGIEHGTITVVSSHIPHEVTTFREDVETFGRHAVVAFSMDIHSDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G VID + GL DLR R ++FI +A RI EDYLRILRFFRF A YG+ + Sbjct: 123 NALYAQADGTVIDPLAGLEDLRARRVRFIENADQRIREDYLRILRFFRFHAWYGDPEGGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D+DGL A GL LS ER+ +E+ KLL A +P ++ M G+ + Sbjct: 183 DADGLAACAANLDGLARLSRERVGAEMCKLLGAPDPARSVAAMQAAGVLNAVLPGAGA-- 240 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L+ ++ E D++LR L S+A++ L + L + Sbjct: 241 -RPLALLVHQETETNTAPDAILRLAAL-------GGESVAERLRLSKSDTRRL-----AH 287 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +K + + +L Y YG + A L + A +T + D+ Sbjct: 288 LQEKAAGLMQAAELGYRYGVEEGQAILLLRGA-------WLETLVSPETAEDLKMGAAAR 340 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+ D++ G +G L ++ WI+S F LS++DL Sbjct: 341 FPVAATDLMPD--YSGPALGARLQALERRWIDSRFALSRDDLL 381 >gi|291540833|emb|CBL13944.1| uncharacterized domain HDIG [Roseburia intestinalis XB6B4] Length = 446 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 97/443 (21%), Positives = 177/443 (39%), Gaps = 44/443 (9%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K + I+ L ++ VGG VRD++++ + D DI T P++V IF++ Sbjct: 2 KIVLPEKVKFIIETLETHGYEAYAVGGCVRDTMLHRTPGDWDITTQAKPEQVKEIFAEKN 61 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTIN 125 I T I +GT+ ++ + F++TT R D D R+ K V FT D RRDFTIN Sbjct: 62 IHTIDTGIQHGTVTVMVEHEGFEVTTYRIDGEYEDARHPKNVQFTASLLEDLKRRDFTIN 121 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ + + +ID G+ DL I+ +G A R ED LR+LR RF A G +I+++ Sbjct: 122 AMAYNDKNGLIDAFDGVGDLERGVIRCVGCAMERFSEDALRMLRAVRFAAQLG-FDIEAE 180 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A +K + +S+ERI +E+ KL+ + +P I + G+ + + Sbjct: 181 TKEAMVKLAPDIAKISAERIQTELVKLITSAHPGE-IRTAWETGLTAVFLPEFDRMMATP 239 Query: 246 LSQVIEAEQVFEWKI--------DSLLRFIVLISW----------------------QDK 275 + V E + D +LR +L+ + Sbjct: 240 QNTKHHCYSVGEHTVAALEHIVGDKVLRLTMLLHDVAKPVCRTTDASGNDHFYGHPKEGS 299 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 + + ++ + + + + LS +++ G + A + A Sbjct: 300 EMARKILRRLKFDNDTTDKVCRLVCWHDDNPPLSEKNVRRAVSRIGVEQYPALFAVKRAD 359 Query: 336 HYNNLTHQD----------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 +Q ++L + G D++ G+ PGK++G L Sbjct: 360 ILAQSEYQREEKLSYVDGYEALYREILEKNQCLTIRDLAVNGSDLIAAGMKPGKEIGETL 419 Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408 + ++ ++E L + Sbjct: 420 KSILELVLDDPELNNRELLLERI 442 >gi|322411575|gb|EFY02483.1| tRNA CCA-pyrophosphorylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 402 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 106/404 (26%), Positives = 189/404 (46%), Gaps = 18/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILNKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL + ++ +G+A R ED LRI+R FRF A + +I+ A Sbjct: 129 GQVIDKFTGLQDLEQKRLRAVGEAADRFEEDALRIMRGFRFAASL-DFDIEFATFEAMKS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L +S ER + E +KLL A + I+ M + + L QEI+L QL+ + Sbjct: 188 HSPLLAKISVERSFIEFDKLLMAPHWRKGILAMIACQAYDYLPGLGQQEIALKQLTVSLA 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + I+ +S Q+ K L K + + + + ++ Sbjct: 248 DGFTFSDHHQAWAYLIISLSIQNPKPFL---KAWKTSNDFQRCVAQLVTLYHIRQERPFE 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG K+ ++ +L D +I Q+ + K + G ++ Sbjct: 305 KLD--IYQYGKKLT----RLIESLRQAMGQDVDMAYIEQLDQALAIHDKHDIVVNGSHLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K +G+ PG ++G +L + + + + +R+ +A+ Sbjct: 359 KNFGLKPGPELGVMLERIELAIVEGHLANELDAIEAFVREELAT 402 >gi|58617624|ref|YP_196823.1| Poly(A) polymerase [Ehrlichia ruminantium str. Gardel] gi|58417236|emb|CAI28349.1| Poly(A) polymerase [Ehrlichia ruminantium str. Gardel] Length = 397 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 132/404 (32%), Positives = 213/404 (52%), Gaps = 16/404 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 +++D++ I + + K + +VGG VRD+++ DID ATT+LP +++ + K Sbjct: 7 NNNDILLITNAIKKHQGDIRLVGGCVRDNILKRQTVDIDFATTLLPYQIIEALNIAHIKS 66 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 IPT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NALY D Sbjct: 67 IPTGIKHGTITAIVNNTAYEITTLRSDIYCDGRHAEVKFTNNWQQDASRRDFTFNALYCD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA- 189 ++G V DY G+ DL+N+ + FIGD RI EDYLRILR FRF A +N SD ++ Sbjct: 127 EKGIVYDYFSGIQDLKNKQLNFIGDPETRIQEDYLRILRAFRFHAAICSQNKLSDIIIQS 186 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K + LS ERI E KLL N +N + M + ++I + L V Sbjct: 187 CTKYASCISKLSRERIRDEFFKLLSCINLVNTLKIMQKCNVLQKIIP------FEVLPNV 240 Query: 250 IEAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 I + + + +++ L+ + +++ SI + L + + N + L Sbjct: 241 ISSSVISHTE--PIVKLAALLRTNKNEFSIDKIRDSLYLSNSDKKL-LLSLVNNNLELPL 297 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 SI + +K +G K+ +KI A L + D ++Q + + P FPL+G Sbjct: 298 SIMDQQKYINKFGKKIYCYLIKIRHAEL--TLNNHD---LVQYIEYADKFVIPEFPLSGK 352 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 D + G G+ +G++L + W +S++QL++ L +KL+ Sbjct: 353 DFLAIGYQEGRHLGDVLKKLRNLWEDSAYQLTRHQLLEHGKKLL 396 >gi|325663707|ref|ZP_08152111.1| hypothetical protein HMPREF0490_02852 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470200|gb|EGC73433.1| hypothetical protein HMPREF0490_02852 [Lachnospiraceae bacterium 4_1_37FAA] Length = 444 Score = 309 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 102/435 (23%), Positives = 188/435 (43%), Gaps = 48/435 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L + ++ VGG VRDSL+ D DI T+ PD ++F++T + T I Sbjct: 11 TIIQTLQEHGYEAYAVGGCVRDSLLGREPGDWDITTSASPDETKKLFART----VDTGIE 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ K+ F++TT R D D R+ +V+FTR+ + D LRRDFTINA+ + Sbjct: 67 HGTVTVLLGKEGFEVTTYRIDGKYEDSRHPTEVIFTRNLREDLLRRDFTINAMAYNDTEG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG++DL+ + I+ +G+A R ED LRI+R RF A G +++ + A + Sbjct: 127 IVDIFGGMDDLKRKIIRCVGNARERFGEDALRIMRGVRFAAQLG-FSLEKETKEAMAELA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L+ +S+ERI +E+ KLL + +P I Y+ GI I + E+ Sbjct: 186 PTLEKISAERIQTELVKLLVSDSPEL-IREAYHLGITAVILPEFDEMMRTGQETKYHRYD 244 Query: 255 VFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMAKK 284 V E D +LR +L+ K + ++ Sbjct: 245 VGEHTVQAVCNVPPDKVLRLTMLLHDVAKPEMKTVDADGTAHFKGHDIRGEQKAKEILRR 304 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + + + ++K ++ L + A + ++ Sbjct: 305 LKFDNDTIHKVTKLVRWHDYRMPAEKKNVRKAMSKISAELFPMYLLVKRADILAHSMYRR 364 Query: 345 TCFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 + + ++D +TG D++ G+ PGK++G +L + + Sbjct: 365 EEELENLSGLQKCYEEIVADHECVSLKQLAVTGTDLIGIGMKPGKQIGEVLNELLRIVLE 424 Query: 395 SSFQLSQEDLHHLLR 409 ++E L ++ Sbjct: 425 YPEFNNKEHLLRFVQ 439 >gi|326201312|ref|ZP_08191184.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium papyrosolvens DSM 2782] gi|325988880|gb|EGD49704.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium papyrosolvens DSM 2782] Length = 448 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 105/451 (23%), Positives = 185/451 (41%), Gaps = 49/451 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K+ + ++++ LN+ ++ VGG VRDS++ + D DI T LP + ++F Sbjct: 3 LCEKFDFPENAGHVINKLNEAGYEAYFVGGCVRDSILCKAPYDWDITTNALPADIKQLFD 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDF 122 KT T I +GT+ ++ + ++TT R D R KV FT K D RRDF Sbjct: 63 KT----YDTGIKHGTVTVLSGEMSLEVTTYRIDGDYKDFRRPEKVEFTSSLKEDLARRDF 118 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TINA+ + ++D+ GGL DL+ R IK +GD R ED LR+LR RF A G +I Sbjct: 119 TINAMAYHPEHGLVDFFGGLKDLKKRVIKAVGDPKQRFREDALRMLRAIRFSAQLG-FSI 177 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + A + +SSER+ E+NK L +++PL+ +++ GI I + + Sbjct: 178 EEATFEAIKNNSALIANISSERVRDELNKTLVSQHPLH-FNYLHQTGILPYILPEFERCY 236 Query: 243 LDQLSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKS----------------- 277 + V + + D +LR+ +L+ K Sbjct: 237 KTEQVNPYHVYNVADHTMFAVKSIDNDHILRWTMLLHDVGKPPRKTTDAKGIDHFYGHQA 296 Query: 278 -----ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332 + + +E ++ + + I+K GD++ LK+ Sbjct: 297 VSSQIAEKVLNRLRFDKESIKKIVLLVKHHDMDIEDNPKSIRKAINKIGDELFPLLLKVQ 356 Query: 333 LALH----------YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKV 381 A + + S+ K + GDD++ G+ PG ++ Sbjct: 357 KADKMAQNPDFLPERIIKWIKIEKIYSDIKSEQQCLNKKDMAVNGDDLILLIGMKPGIEI 416 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +L + + ++ L L +K + Sbjct: 417 REMLDYLCDCVLECPELNEKQKLLELAKKHM 447 >gi|331087228|ref|ZP_08336298.1| hypothetical protein HMPREF0987_02601 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408914|gb|EGG88375.1| hypothetical protein HMPREF0987_02601 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 444 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 102/435 (23%), Positives = 188/435 (43%), Gaps = 48/435 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L + ++ VGG VRDSL+ D DI T+ PD ++F++T + T I Sbjct: 11 TIIQTLQEHGYEAYAVGGCVRDSLLGREPGDWDITTSASPDETKKLFART----VDTGIE 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ K+ F++TT R D D R+ +V+FTR+ + D LRRDFTINA+ + Sbjct: 67 HGTVTVLLGKEGFEVTTYRIDGKYEDSRHPTEVIFTRNLREDLLRRDFTINAMAYNDTEG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG++DL+ + I+ +G+A R ED LRI+R RF A G +++ + A + Sbjct: 127 IVDIFGGMDDLKRKIIRCVGNARERFGEDALRIMRGVRFAAQLG-FSLEKETKEAMTELA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L+ +S+ERI +E+ KLL + +P I Y+ GI I + E+ Sbjct: 186 PTLEKISAERIQTELVKLLVSDSPEL-IREAYHLGITAVILPEFDEMMRTGQETKYHRYD 244 Query: 255 VFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMAKK 284 V E D +LR +L+ K + ++ Sbjct: 245 VGEHTVQAVCNVPPDKVLRLTMLLHDVAKPEMKTVDADGTAHFKGHDIRGEQKAKEILRR 304 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + + + + ++K ++ L + A + ++ Sbjct: 305 LKFDNDTIHKVTKLVRWHDYRMPAEKKNVRKAMSKISAELFPMYLLVKRADILAHSMYRR 364 Query: 345 TCFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 + + ++D +TG D++ G+ PGK++G +L + + Sbjct: 365 EEELENLSGLQKCYEEIVADHECVSLKQLAVTGTDLIGIGMKPGKQIGEVLNELLRIVLE 424 Query: 395 SSFQLSQEDLHHLLR 409 ++E L ++ Sbjct: 425 YPEFNNKEHLLRFVQ 439 >gi|238922936|ref|YP_002936449.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium rectale ATCC 33656] gi|238874608|gb|ACR74315.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium rectale ATCC 33656] Length = 446 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 103/439 (23%), Positives = 181/439 (41%), Gaps = 48/439 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ VGG VRDSL+ QD DI T+ P +V IF T I T I + Sbjct: 12 IIDTLYEHGFEAYAVGGCVRDSLLGRVPQDWDITTSAKPAQVKAIFDHT----IDTGIQH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ +++TT R D D R+ +V FT + K D RRDFTINA+ + + + Sbjct: 68 GTVTVMLEHVGYEVTTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNHRAGL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ DL+ I+ +G AH R ED LR+ R RF A G +I++ A + Sbjct: 128 VDEFDGIADLKAHVIRCVGCAHDRFSEDALRMFRAVRFAAQLG-FDIEAQTKAAIKELAP 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L +S+ERI E+ KLL + +P + +Y G+ + + V Sbjct: 187 ALSKVSAERIQVELVKLLTSDHP-QMMRDLYELGLTAVFMPEFDVMMQTPQHNKHHMYSV 245 Query: 256 FEWKI--------DSLLRFIVLISWQDK----------------------KSILSMAKKF 285 E + D +LR +L+ K + ++ Sbjct: 246 GEHTLHTLEHVRADKILRLTMLLHDVAKPVCITTDEEGQNHFKKHPVVGADMTRKILRRL 305 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 + ++ ++ +++ G ++ ++ A ++ Sbjct: 306 KFDNRTTDCCCKLVKEHDDRPAITERNVRRAISRIGTELFPLLFEVKRADTLGQSMYKRA 365 Query: 346 CFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + ++L+D K + G D++K G+ PG K+G+IL ++ ++ Sbjct: 366 EKLEYIAEYESVYRKILADHQCVSKKEMKINGSDLIKMGVEPGPKLGDILDRLYEQVLDD 425 Query: 396 SFQLSQEDLHHLLRKLIAS 414 + L L K+I S Sbjct: 426 PSLNEAQKLKELANKIITS 444 >gi|144897232|emb|CAM74096.1| Polynucleotide adenylyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 413 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 124/400 (31%), Positives = 202/400 (50%), Gaps = 8/400 (2%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 + W ++ ++ L + VGG VRDS++ +++DIDIAT PDRVM + Sbjct: 13 QLSPQAWMQAAETQAVIKALTADGAEVRFVGGCVRDSVLKRAIKDIDIATHDPPDRVMAL 72 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +VIPT +++GT+ + K +++ITTLR D+ T GR+A+V FT DW AD+ RRDF Sbjct: 73 LERAHIRVIPTGLAHGTVTAVVGKAHYEITTLREDVETFGRHARVSFTDDWTADAARRDF 132 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 T+NA++AD QG++ D GGL DL ++F+GD RI ED LR+LRFFRFFAHYG ++ Sbjct: 133 TMNAMFADPQGRIYDPFGGLADLGAGHVRFVGDPFRRIEEDLLRLLRFFRFFAHYGRTSL 192 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 +S + A K L LS ER+ E+ +LL+A +P ++ M GI + + EI Sbjct: 193 ESQAMAACRKLAPRLVELSGERVAGELIRLLQAPDPALVLMVMKTNGILAHVLPEAVEIG 252 Query: 243 LDQLSQVIEAEQVFE--WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 ++ +E+ + D L R ++S D I + ++ L ++S Sbjct: 253 RLKVLTWLESRAMVRDTIHPDPLRRLAAMLS-ADAAGIAVLGERLKLSAAQTGRILSIVC 311 Query: 301 CNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN---NLTHQDTCFILQVLSDII 356 + + + ++ G + + A H + L +++ +L Sbjct: 312 PQVDVRMDMDRRAARRALRRVGADTFRDLVLVAWAEHRSCSGLLDSRESRMWQDLLDQAD 371 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 HW+ P+ G D + G+P G +G L + W Sbjct: 372 HWQPVELPVRGADCLDLGVPRGPAIGQALARVE-AWCEGG 410 >gi|329114174|ref|ZP_08242936.1| CCA-adding enzyme [Acetobacter pomorum DM001] gi|326696250|gb|EGE47929.1| CCA-adding enzyme [Acetobacter pomorum DM001] Length = 413 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 112/387 (28%), Positives = 186/387 (48%), Gaps = 17/387 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD ++ ++ D+D+A P+ VM+ V+PT +++GT+ + Sbjct: 42 EARLVGGVVRDLMVGRAIADVDLAVPQPPEEVMQGLKAQGITVVPTGLAHGTVTAVIDSA 101 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++ITTLR D+ TDGR+A V +T +W+ D+ RRDFTINA+ D G V DY GG DL Sbjct: 102 PYEITTLRRDVETDGRHAVVCWTDNWQEDAARRDFTINAMSCDSTGAVHDYFGGQQDLAE 161 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 T++F+GDA RI ED LRILRFFRF+ YG+ D+ + A L LS ER+WS Sbjct: 162 GTVRFVGDATLRIQEDALRILRFFRFWGRYGQGRADAQAMQAITAQAALLNGLSVERVWS 221 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ ++L + + M GI + + + L F D+LLR Sbjct: 222 ELKRILAGPKAQDVVYLMQQAGILPVLLPEGANVPL------FARLMAFNPPADALLRLA 275 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 L+ + MA++ R L + +S +++ L ++ A Sbjct: 276 ALVPNKSA----DMARRLKFSRAEAARLKAMQAEPVPLPKMSDAQLRHLLADTPPDILAA 331 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + + A + + L + + + + P+FP+ G D+++ G PG VG +L Sbjct: 332 RSWLHQARYSDVLGEE-------LRQRLARLEIPVFPIAGRDLLEAGCQPGPHVGQVLKD 384 Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIAS 414 + W ++ +L+ + Sbjct: 385 VRNWWQQGGCSADKQACLAYALELVKA 411 >gi|291523824|emb|CBK89411.1| uncharacterized domain HDIG [Eubacterium rectale DSM 17629] Length = 446 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 103/439 (23%), Positives = 182/439 (41%), Gaps = 48/439 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ VGG VRDSL+ + QD DI T+ P +V IF T I T I + Sbjct: 12 IIDTLYEHGFEAYAVGGCVRDSLLGRTPQDWDITTSAKPAQVKVIFDHT----IDTGIQH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ +++TT R D D R+ +V FT + K D RRDFTINA+ + + + Sbjct: 68 GTVTVMLEHVGYEVTTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNHRAGL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ DL+ I+ +G AH R ED LR+ R RF A G +I++ A + Sbjct: 128 VDEFDGIADLKAHVIRCVGCAHDRFSEDALRMFRAVRFAAQLG-FDIEAQTKAAIKELAP 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L +S+ERI E+ KLL + +P + +Y G+ + + V Sbjct: 187 ALSKVSAERIQVELVKLLTSDHP-QMMRDLYELGLTAVFMPEFDVMMQTPQHNKHHMYSV 245 Query: 256 FEWKI--------DSLLRFIVLISWQDK----------------------KSILSMAKKF 285 E + D +LR +L+ K + ++ Sbjct: 246 GEHTLHTLEHVRADKILRLTMLLHDVAKPVCITTDEEGQNHFKKHPVVGADMTRKILRRL 305 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 + ++ ++ +++ G ++ ++ A ++ Sbjct: 306 KFDNRTTDCCCKLVKEHDDRPAITERNVRRAISRIGTELFPLLFEVKRADTLGQSMYKRA 365 Query: 346 CFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + ++L+D K + G D++K G+ PG K+G+IL ++ ++ Sbjct: 366 EKLEYIAEYESVYRKILADHQCVSKKEMKINGSDLIKMGVEPGPKLGDILDRLYEQVLDD 425 Query: 396 SFQLSQEDLHHLLRKLIAS 414 + L L K+I S Sbjct: 426 PSLNEAQKLKELANKIITS 444 >gi|291528708|emb|CBK94294.1| uncharacterized domain HDIG [Eubacterium rectale M104/1] Length = 446 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 103/439 (23%), Positives = 182/439 (41%), Gaps = 48/439 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ VGG VRDSL+ + QD DI T+ P +V IF T I T I + Sbjct: 12 IIDTLYEHGFEAYAVGGCVRDSLLGRTPQDWDITTSAKPAQVKAIFDHT----IDTGIQH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ +++TT R D D R+ +V FT + K D RRDFTINA+ + + + Sbjct: 68 GTVTVMLEHVGYEVTTYRIDGEYEDARHPKEVTFTSNLKLDLERRDFTINAMAYNHRAGL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ DL+ I+ +G AH R ED LR+ R RF A G +I++ A + Sbjct: 128 VDEFDGIGDLKAHVIRCVGCAHDRFSEDALRMFRAVRFAAQLG-FDIEAQTKAAIKELAP 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L +S+ERI E+ KLL + +P + +Y G+ + + V Sbjct: 187 ALSKVSAERIQVELVKLLTSDHP-QMMRDLYELGLTAVFMPEFDVMMQTPQHNKHHMYSV 245 Query: 256 FEWKI--------DSLLRFIVLISWQDK----------------------KSILSMAKKF 285 E + D +LR +L+ K + ++ Sbjct: 246 GEHTLHTLEHVRADKILRLTMLLHDVAKPVCITTDEEGQNHFKKHPVVGADMTRKILRRL 305 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 + ++ ++ +++ G ++ ++ A ++ Sbjct: 306 KFDNRTTDCCCKLVKEHDDRPAITERNVRRAMSRIGTELFPLLFEVKRADTLGQSMYKRA 365 Query: 346 CFI----------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + ++L+D K + G D++K G+ PG K+G+IL ++ ++ Sbjct: 366 EKLEYIAEYERVYRKILADHQCVSKKEMKINGSDLIKMGVEPGPKLGDILDRLYEQVLDD 425 Query: 396 SFQLSQEDLHHLLRKLIAS 414 + L L K+I S Sbjct: 426 PSLNEAQKLKELANKIITS 444 >gi|326388402|ref|ZP_08209998.1| polynucleotide adenylyltransferase region [Novosphingobium nitrogenifigens DSM 19370] gi|326207134|gb|EGD57955.1| polynucleotide adenylyltransferase region [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 137/413 (33%), Positives = 202/413 (48%), Gaps = 28/413 (6%) Query: 3 SIVQHKWFHDSDLINILSLLNKGEDKSC-IVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 S+ W DL ++ L+ + C VGGAVRD+L+ ++V+DID+AT +LP+ + Sbjct: 4 SLPAAPWTRREDLAEVVLALDPDGEGLCRWVGGAVRDTLVGIAVKDIDMATRLLPEETLA 63 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K IPT +++GT+ + +ITTLR D+ TDGR+A V F+ DW+ D+ RRD Sbjct: 64 RLKAAGIKAIPTGLAHGTVTALTAGGPVEITTLRRDVETDGRHATVAFSTDWREDAARRD 123 Query: 122 FTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINALYAD + ++ DY GG DL ++FIGDA RI EDYLRILR+FRF A +G Sbjct: 124 FTINALYADPRTLEISDYFGGQADLAAHRVRFIGDAETRIREDYLRILRYFRFHARFGSL 183 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 D++ A + GLK LS ER+ E+ +LL +P + M G+ +I + Sbjct: 184 PADAEAEEACARLAPGLKGLSRERVGWELLRLLGHPDPAPTLRRMAELGVLAQILPEADP 243 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +L L E V DSL R ++ D +A + L + L + Sbjct: 244 EALPPLVAAEACENV---APDSLRRLAAILP-PDPPLAEQVAARLRLSTAQKKRLATAAA 299 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 +T E + L Y G +L + Q L+ + W Sbjct: 300 -----RTSETGEPRALAYRLGMTEASDRLLLAG----------------QSLAPLAGWSP 338 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P FPL G +V GI G V +L + WI+ F +E + +L++ IA Sbjct: 339 PTFPLKGGAIVARGIGAGPMVARLLRTVENRWIDEGFP-DEERIEAMLQEEIA 390 >gi|148235405|ref|NP_001082356.1| ATP(CTP):tRNA nucleotidyltransferase precursor [Xenopus laevis] gi|24753797|gb|AAN64029.1|AF466151_1 ATP(CTP):tRNA nucleotidyltransferase precursor [Xenopus laevis] Length = 428 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 121/403 (30%), Positives = 192/403 (47%), Gaps = 16/403 (3%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 L + +L K + I GGAVRD L D+D ATT P+++ +F K + Sbjct: 35 LFTDGLKTLANLFAKDRYELRIAGGAVRDLLSGKQPHDVDFATTATPEQMKDMFLKDGVR 94 Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I ++GT+ F+ITTLR D G + R + D+ RRD TIN+++ Sbjct: 95 LINNKGETHGTVTARDNVSEFEITTLRVDCTQMGDMLSGIHDR-LEIDAERRDLTINSMF 153 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--G 186 G + DY G DL+NR ++F+GD RI EDYLRILR+FRF+ E++ Sbjct: 154 LGFDGTLYDYFNGYEDLKNRCVRFVGDPSQRIQEDYLRILRYFRFYGRISERSGAHTSGT 213 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + GL+ +S ERIW E+ K+LE + + I +Y+ G+ + L ++ +L++ Sbjct: 214 LDAVRENASGLRGISGERIWVELKKILEGNHVNHLIQIIYDLGVAPHVGLP-EDGNLEEF 272 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFFNCNFNQ 305 ++V E + K +L L S D L + K S + + FL+ + Sbjct: 273 ARVCERSRRMSPKPMTL--LTALFSNTDHVQKLDLRLKISKEEKNLALFLLQQRRELTAE 330 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 +T + P Y+ + KI L Y ++ W P FP+ Sbjct: 331 RTDAAPLKPFKDYVVDSREPDTHRKICELLKYQGEEQ--------FFREMEGWTLPRFPV 382 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G D+ + GI GK++G IL K+ W S FQ S+E+L + + Sbjct: 383 SGHDLRRMGISSGKEIGRILQELKEHWKGSGFQTSKEELLNRV 425 >gi|331083670|ref|ZP_08332781.1| hypothetical protein HMPREF0992_01705 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403881|gb|EGG83433.1| hypothetical protein HMPREF0992_01705 [Lachnospiraceae bacterium 6_1_63FAA] Length = 415 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 186/417 (44%), Gaps = 32/417 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L + + VGG VRDSL+ S D DI T+ P V IF +T + T Sbjct: 9 VQTIIRTLQEHGYDAYAVGGCVRDSLLFRSPADWDITTSAKPLEVKEIFKRT----VDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ K+ F++TT R D D R+ +V+FT + + D RRDFTINA+ + Sbjct: 65 LQHGTVTVLIEKEGFEVTTYRIDGEYEDSRHPKEVIFTGNLEEDLKRRDFTINAMAYNDA 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG DL+++ ++ +G+ R ED LRILR RF A G +I+ A+ Sbjct: 125 VGLVDVFGGRQDLQDKIVRCVGNPQERFTEDALRILRAVRFSAQLG-FSIEEKTKEAAKV 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK +S+ERI +E+ KLL +KNP + + GI K + + ++ ++ Sbjct: 184 LAPTLKNISAERIQTELLKLLVSKNPH-YLKTAWELGITKIVLPEF-DVLMETSMGEKTL 241 Query: 253 EQVFEWKIDSLLRFIVLISWQDK------KSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + D R VL + +K ++ ++ + + + Sbjct: 242 KAFAYTSADKAERLAVLFANMEKTPEKSRDLAKNILRRLRFDNDTINKVSELVFWH---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-------------CFILQVLS 353 T KK + + A + L +H L ++ F +++ Sbjct: 298 TCPWECTKKAVRIVLSQCTPALFPVLLNVHRAELLAEEKPDKENLEFLEKSGEFYREIME 357 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + ++G D ++ GI PGKK+G +L C + + + ++E L + K Sbjct: 358 KKECISIKMLAVSGKDFIEMGIEPGKKIGELLSSCLALVLENPEKNTREYLLSYITK 414 >gi|260587369|ref|ZP_05853282.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Blautia hansenii DSM 20583] gi|260542236|gb|EEX22805.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Blautia hansenii DSM 20583] Length = 415 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 185/417 (44%), Gaps = 32/417 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L + + VGG VRDSL+ S D DI T+ P V IF +T + T Sbjct: 9 VQTIIRTLQEHGYDAYAVGGCVRDSLLFRSPADWDITTSAKPLEVKEIFKRT----VDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ K+ F++TT R D D R+ +V+FT + + D RRDFTINA+ + Sbjct: 65 LQHGTVTVLIEKEGFEVTTYRIDGEYEDSRHPKEVIFTGNLEEDLKRRDFTINAMAYNDA 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG DL+++ ++ +G+ R ED LRILR RF A G +I+ A+ Sbjct: 125 VGLVDVFGGRQDLQDKIVRCVGNPQERFTEDALRILRAVRFSAQLG-FSIEEKTKEAAKV 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK +S+ERI +E+ KLL +KNP + + GI K + + ++ ++ Sbjct: 184 LAPTLKNISAERIQTELLKLLVSKNPH-YLKTAWELGITKIVLPEF-DVLMETSMGEKTL 241 Query: 253 EQVFEWKIDSLLRFIVLISWQDK------KSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + D R VL + +K + ++ + + + Sbjct: 242 KAFAYTSADKAERLAVLFANMEKTPEKSRDLAKKILRRLRFDNDTINKVSELVFWH---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-------------CFILQVLS 353 T KK + + A + L +H L ++ F +++ Sbjct: 298 TCPWECTKKAVRIVLSQCTPALFPVLLNVHRAELLAEEKPDKENLEFLEKSGEFYREIME 357 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + ++G D ++ GI PGKK+G +L C + + + ++E L + K Sbjct: 358 KKECISIKMLAVSGKDFIEMGIEPGKKIGELLSSCLALVLENPEKNTREYLLSYITK 414 >gi|114769866|ref|ZP_01447476.1| Poly A polymerase family protein [alpha proteobacterium HTCC2255] gi|114549571|gb|EAU52453.1| Poly A polymerase family protein [alpha proteobacterium HTCC2255] Length = 383 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 130/408 (31%), Positives = 207/408 (50%), Gaps = 29/408 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + ++W D I ++ L ++ VGG VR+SL+ L + DIDI+T PD ++ + Sbjct: 3 INNRWLKSKDTIKVMDALKCRNNQVLFVGGCVRNSLLGLPITDIDISTNARPDEIINLAK 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K K IPT I++GTI II K F++T+ R D+ TDGR+A V ++ + D+ RRDFTI Sbjct: 63 KAGLKSIPTGINHGTITIISNNKAFEVTSFRKDIKTDGRHATVAYSDKIEDDAERRDFTI 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NA+Y G +ID + G+ DL+ R ++FI D + RI+EDYLRILRFFRF A YG + I Sbjct: 123 NAIYMTTDGIIIDPLNGMKDLKKRHVRFIKDPNKRIIEDYLRILRFFRFTAEYGDPDLGI 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A G+ +L+ ER+ SEI K+L+ +NP + + M GI I + Sbjct: 183 DAEGLSACAANIDGIALLAKERVGSEIRKILKTQNPSSVLAAMEISGILSNILPGTACKN 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + L + E + W + R IVL D + L ++ K + +E + L + Sbjct: 243 MPTLIHL-ENKNTINW----ITRLIVL-GGADPTNSLRLSNKEN--KEYKSTLKAI---- 290 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + + +G+ + + AL +T + I Sbjct: 291 -----NMGEKPSAISFKFGEIIAYSYSLAIAAL-------TETSPPNDLSDQIAKGSSVK 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP+ D+ GK++G++L K WI S F L+ +DL + + Sbjct: 339 FPIKPQDLHNL---EGKQLGDMLKKLKSIWIKSDFTLTNKDLMKKIDQ 383 >gi|154505528|ref|ZP_02042266.1| hypothetical protein RUMGNA_03065 [Ruminococcus gnavus ATCC 29149] gi|153794186|gb|EDN76606.1| hypothetical protein RUMGNA_03065 [Ruminococcus gnavus ATCC 29149] Length = 444 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 108/437 (24%), Positives = 187/437 (42%), Gaps = 52/437 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + + VGG VRDS++N +D DI T+ P++V RIF +T + T I + Sbjct: 12 IIKNLQRHGYDAYAVGGCVRDSILNRKPEDWDITTSAKPEQVKRIFRRT----VDTGIEH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K F++TT R D L DGR+ +V FT + D RRDFTINA+ + ++ Sbjct: 68 GTVTVLIGKDGFEVTTYRVDGLYEDGRHPKEVTFTSRLEEDLKRRDFTINAMAYNDDERL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG+ DL I+ +GD R ED LRILR RF A I+ + A Sbjct: 128 VDAFGGMRDLNYHLIRCVGDPKERFSEDALRILRAVRFSAQLA-FPIEPETAEAIKSLAP 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLDQ 245 L+ +S+ERI +E+ KLL + +P I GI K + + ++ D Sbjct: 187 NLEKISAERIQAELVKLLVSDHPER-IQDACELGITKVVLPEWDDMVGVKQNTPHHKYDV 245 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDK----------------------KSILSMAK 283 + + A Q K D +LR +L K + ++ K Sbjct: 246 AAHTVHALQ--NVKNDKVLRLTMLFHDMGKPVMKTTDENGRDHFKGHAIASEQIAKTVMK 303 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + + + + + + +++ + G ++ L + LA +++ Sbjct: 304 RLKFDNDTIRKVTKLVAYHDYRMEPTGANVRRAMHEIGVELFPYYLAVRLADTKAQSSYE 363 Query: 344 DTCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 + ++ ++ L +TG D++ GI PGK++G +L I Sbjct: 364 RRGKLENIIQIRELYRNALRNKECVTLKDLAVTGTDLINLGIAPGKELGTLLNELLDMVI 423 Query: 394 NSSFQLSQEDLHHLLRK 410 + L +++ Sbjct: 424 EDPAWNQKGKLCDYVKE 440 >gi|322377862|ref|ZP_08052351.1| polyA polymerase [Streptococcus sp. M334] gi|321281285|gb|EFX58296.1| polyA polymerase [Streptococcus sp. M334] Length = 399 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 104/398 (26%), Positives = 188/398 (47%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++S+ A Sbjct: 129 GEIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELESETFKAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ K + R+ + ++ Sbjct: 246 ETNFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTTLALRE--KGEL 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + Q I Q L+ IH KK + G + + Sbjct: 303 SKRDCYRFDLDLLLQAENLRQA-QGKPVNPQAITEIYQSLT--IHDKKEIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEYAIVDGELENDRQAIHTYLRE 397 >gi|310657862|ref|YP_003935583.1| poly a polymerase family protein [Clostridium sticklandii DSM 519] gi|308824640|emb|CBH20678.1| Poly A polymerase family protein [Clostridium sticklandii] Length = 444 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 107/441 (24%), Positives = 190/441 (43%), Gaps = 41/441 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + I++++ + ++ IVGG++RDSL+ + +DIDIA++ P + RIF+ YK I Sbjct: 8 KEALEIINIIEESGYEAYIVGGSLRDSLLGMQPKDIDIASSASPTEIKRIFNS--YKTID 65 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ +I K +ITT RS+ D R V F ++ D RRDFTINA+ + Sbjct: 66 TGIDFGTVTLIYNDKPVEITTFRSESVYLDSRRPDSVSFEKNVDEDLKRRDFTINAMAYN 125 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q K++D G DL N+ I+ +G R ED LR+LR RF +I+ A Sbjct: 126 QSKKLVDLFSGEEDLNNKLIRCVGSPDERFSEDALRMLRAVRFACVLN-FDIEKKTFEAI 184 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ +S ERI +E+NK+L + P I + + + I ++ +S Sbjct: 185 KHNASRIEYISKERIQAELNKILMSSKPSRGIRLLLDSKLLDYILPEISRLSGFNQHNPF 244 Query: 251 EAEQVFEWKIDSL--------LRFIVLISWQDKKS----------------------ILS 280 ++ E + + LR L K S Sbjct: 245 HHLELLEHTLCVMDKVEPRLQLRLAALFHDAGKVDTITLDENGIGHFYGHDSVSEEIAKS 304 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 + K+ EI + Q + I+KL ++G+ + + A Sbjct: 305 VLKRLRYSNEIIELTSQLVRYHMIQANVIGKKGIQKLLRIFGENNIFELADLHFADSSCT 364 Query: 340 LTHQDT----CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + + I QVL + I + + G D++K G GK++G+IL + Sbjct: 365 IIEVNEDAFRLKIRQVLDENIPFSVKDLDIDGYDLMKIG-AKGKQIGDILNELLELVSED 423 Query: 396 SFQLSQEDLHHLLRKLIASSQ 416 + + ++ L +++ ++ + Sbjct: 424 ASKNNKNQLMLYAKEIYSNFE 444 >gi|254466149|ref|ZP_05079560.1| polyA polymerase family protein [Rhodobacterales bacterium Y4I] gi|206687057|gb|EDZ47539.1| polyA polymerase family protein [Rhodobacterales bacterium Y4I] Length = 383 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 123/407 (30%), Positives = 188/407 (46%), Gaps = 28/407 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W +D + + + VGG VR++L+ V D+DIAT P++VM + + Sbjct: 3 IDQPWLNDKATQAVCEAVTADGAQVLFVGGCVRNALLCEPVSDMDIATDARPEQVMELAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + K +PT I +GT+ ++ +ITT R D+ TDGR A V F+ D D+ RRDFT+ Sbjct: 63 RAGIKAVPTGIDHGTVTLVKNGIPHEITTFRKDVATDGRRAVVAFSTDIAEDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 NA+YA G+++D +GGL DL R ++FIG A HRI EDYLR LR+FRF A YG++ Sbjct: 123 NAIYARPDGEIVDPLGGLADLTKRRVRFIGTAEHRIREDYLRSLRYFRFHAWYGDQAEGF 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A GL LS ER+ +E+ KLL A +P ++ M G+ I + + Sbjct: 183 DPDALAAISANLDGLASLSKERVGAELVKLLAAPDPAPSVAAMRQAGVLALILPGADDRT 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + + R L + + L + L + Sbjct: 243 LAPLIHLEA-----GRAASGIRRLAAL-------GGEGLQEALRLSKAQASHLAAI---- 286 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + +L Y G + + L + AL L L + DI + + Sbjct: 287 -RKAAAGTSQAGELGYRLGAQKALDALLLRAALLEQPLP-------LDLEIDITQGARAV 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 FP+ D+ G +G + + WI S F L +E+L LR Sbjct: 339 FPVKARDLQPD--LTGPDLGAAMKKMEANWIASGFTLCREELLDSLR 383 >gi|57239582|ref|YP_180718.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden] gi|58579571|ref|YP_197783.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden] gi|57161661|emb|CAH58591.1| putative nucleic acid independent RNA polymerase [Ehrlichia ruminantium str. Welgevonden] gi|58418197|emb|CAI27401.1| Poly(A) polymerase [Ehrlichia ruminantium str. Welgevonden] Length = 397 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 131/404 (32%), Positives = 212/404 (52%), Gaps = 16/404 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 +++D++ I + + K + +VGG VRD+++ DID ATT+LP +++ + K Sbjct: 7 NNNDILLITNAIKKYQGDIRLVGGCVRDNILKRQTVDIDFATTLLPYQIIEALNIAHIKS 66 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 IPT I +GTI I ++ITTLRSD+ DGR+A+V FT +W+ D+ RRDFT NALY D Sbjct: 67 IPTGIKHGTITAIVNNTAYEITTLRSDIYCDGRHAEVKFTNNWQQDASRRDFTFNALYCD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA- 189 ++G V DY G+ DL+N+ + FIGD RI EDYLRILR FRF A ++ SD ++ Sbjct: 127 EKGIVYDYFSGIQDLKNKQLNFIGDPETRIQEDYLRILRAFRFHAAICSQDKLSDIIIQS 186 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K + LS ERI E KLL N +N + M + ++I + L V Sbjct: 187 CTKYASCISKLSRERIRDEFFKLLSCINLVNTLKIMQKCNVLQKIIP------FEVLPNV 240 Query: 250 IEAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 I + + + +++ L+ + +++ SI + L + + N + L Sbjct: 241 ISSTVISHTE--PIVKLAALLRTNKNEFSIDKIRDSLYLSNSDKKL-LLSLVNNNLELPL 297 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 SI + +K G K+ +KI A L + D ++Q + + P FPL+G Sbjct: 298 SIMDQQKYINKLGKKIYCYLIKIRHAEL--TLNNHD---LVQYIEYADKFVIPEFPLSGK 352 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 D + G G+ +G++L + W +S++QL++ L +KL+ Sbjct: 353 DFLAIGYQEGRHLGDVLKKLRNLWEDSAYQLTRHQLLEHGKKLL 396 >gi|291236943|ref|XP_002738398.1| PREDICTED: tRNA-nucleotidyltransferase 1, mitochondrial-like [Saccoglossus kowalevskii] Length = 418 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 203/414 (49%), Gaps = 20/414 (4%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 Q + + + + + + I GGAVRD L ++ QD+D+ATT P+ + +F K Sbjct: 20 QFRALFTPQMNKLADIFKRYNYELRIAGGAVRDLLGHIMPQDVDLATTATPEEMKVMFEK 79 Query: 66 TRYKVIPT-SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 +++ T +GTI K+ F++TTLR D +TDGR+A+V FT+DW+ D+ RRD T Sbjct: 80 EGVRMLNTKGEKHGTITARINDKENFEVTTLRIDKVTDGRHAEVEFTKDWELDAERRDLT 139 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 IN+++ G + D+ GG DL + ++F+G+A RI EDYLRILR+FRF+ + + + Sbjct: 140 INSMFLGLDGTLYDFFGGQQDLAEKKVEFVGNAVSRIQEDYLRILRYFRFYGRISDSDDN 199 Query: 184 S--DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L A GL +S ERIW E+ K+L + + + MY + + I L V + Sbjct: 200 HNIHTLKAIEDNAAGLADISGERIWMELKKILIGRLAPSTLRCMYQLRLPQYIGLPV-DG 258 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 ++D+ V + S+ L + ++ IL K+ L + R + F Sbjct: 259 NVDEFKFVWN--RSLSMNPKSMTVLCALFNKEEDVIILD--KRVKLSVQERK--LGLFLV 312 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKL-KIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + Q + E+K + G K+ L Y +Q+ D W+ Sbjct: 313 SSRQDVMDTDELKPFKDMVGQTKDKQIFPKVLELLKYKG--------NIQLYQDFQKWEI 364 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P FP++G D++ GI P KK G + ++ W NS + ++E L + ++ Sbjct: 365 PKFPVSGKDLINMGIQPNKKFGRYMDRLREVWKNSDYTCTKESLLQHAEQFKSN 418 >gi|254510915|ref|ZP_05122982.1| polyA polymerase family protein [Rhodobacteraceae bacterium KLH11] gi|221534626|gb|EEE37614.1| polyA polymerase family protein [Rhodobacteraceae bacterium KLH11] Length = 384 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 119/404 (29%), Positives = 193/404 (47%), Gaps = 26/404 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + ++ + L G ++ VGG VR++L+ V DIDIAT P V+ + Sbjct: 4 ITEDWITANATQDVCAALTAGGAQALFVGGCVRNALLRAPVSDIDIATDARPGHVIELAQ 63 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K K IPT I +GT+ I+ ++TT R D+ TDGR A V F+ + D+ RRDFT+ Sbjct: 64 KAGLKPIPTGIDHGTVTIVSGGTPHEVTTFRRDVETDGRRAVVAFSDKVEEDAARRDFTM 123 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NALYA G ++D + GL DL+ R ++FIG+A RI EDYLR LR+FRF A YG+ + Sbjct: 124 NALYARPDGTILDPLDGLRDLQARRVRFIGEAEKRIREDYLRSLRYFRFHAWYGDADAGF 183 Query: 185 DGLV--ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D A GL+ LS ER+ +E+ KLL A +P ++ M + G+ ++ + + Sbjct: 184 DADALGAIAANLDGLETLSRERVGAEMLKLLAAPDPAPSVAAMRSAGVLAQLLPGADDTA 243 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L+ +++ EQ + + R + + +AK L R L Sbjct: 244 ---LAILVKLEQDAGATPEPIRRLAAVAPVE-------VAKTLRLSRAQLQRLT-----R 288 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + ++ + +L Y YG + + + + A ++ + + H Sbjct: 289 MRDEAMATTSVAELGYRYGAEGGLHETLLRCAFLEQPWSN-------DLADALEHGAAAS 341 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 FP+ D++ G +G L + WI S F L +E+L Sbjct: 342 FPIKATDLIPAFT--GPALGAKLAELEARWIASDFALGREELLA 383 >gi|225026631|ref|ZP_03715823.1| hypothetical protein EUBHAL_00882 [Eubacterium hallii DSM 3353] gi|224956001|gb|EEG37210.1| hypothetical protein EUBHAL_00882 [Eubacterium hallii DSM 3353] Length = 450 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 104/450 (23%), Positives = 184/450 (40%), Gaps = 52/450 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +I+ L+ ++ +VGG VRDS++ D DI T+ LP++V +F +T I Sbjct: 7 KHASDIIKTLSAHGYEAYVVGGCVRDSILGKEPADWDITTSALPEQVKALFPRT----ID 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ I+ K +++TT R D D R +V FT D K D +RRDFTINA+ + Sbjct: 63 TGLKHGTVTIMMDKVGYEVTTYRIDGTYEDHRRPNEVTFTSDLKEDLMRRDFTINAMAYN 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ ++D GG+ DL +R I+ +G+ R ED LR+LR RF K I+ + A Sbjct: 123 EEQGLVDLFGGIQDLTDRIIRCVGNPAERFDEDALRMLRAVRFAGQLNFK-IEENTKAAI 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 LK +S+ERI +E+ KLL + +P I Y G+ + + + Sbjct: 182 EAQHTFLKDVSAERIQTELMKLLVSGHP-EMIRAAYETGLTSVFLPEFDRMMETPQNNPH 240 Query: 251 EAEQVFEWK--------IDSLLRFIVLISWQDKKS----------------------ILS 280 V + + +LR +L+ K + Sbjct: 241 HIYSVGDHTVHAVETIAPNPVLRLTMLLHDIAKPETRTTDENGIDHFYNHNAVGADLAKA 300 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 K+ + + + + + + + +K +V + L + ++ Sbjct: 301 ALKRLKFDNQTTHMVTTLIANHDIRFNDPLGTGRKHVRKIIHRVGVDLFPYLLDVMEADI 360 Query: 341 THQDTCFILQVLSDIIHWKK--------------PLFPLTGDDVVKYGIPPGKKVGNILV 386 + Q L+ L+ + ++ + G+ + GI GK +G IL Sbjct: 361 SAQSDFMRLKKLTALKETREAYREILTANDCLTLKDLKINGNQLKALGISEGKMIGAILN 420 Query: 387 HCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + +N+ E L L K+ Q Sbjct: 421 ALLAQVLNNPELNEYEKLEELALKIYQEVQ 450 >gi|225868453|ref|YP_002744401.1| CCA-adding enzyme [Streptococcus equi subsp. zooepidemicus] gi|225701729|emb|CAW99090.1| CCA-adding enzyme [Streptococcus equi subsp. zooepidemicus] Length = 404 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 97/403 (24%), Positives = 189/403 (46%), Gaps = 20/403 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ + + ++ VGG+VRDSL+N + D+DIA + P+ IF +T I Sbjct: 14 ALPIVKKIKQAGFEAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIFPRT----IDVG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 70 IEHGTVLVLENGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+++ ++ +G R ED LRI+R FRF A + +I+++ A Sbjct: 130 GQVIDIFNGLEDLKHKLLRAVGRPQERFEEDALRIMRGFRFAASL-DFDIETETFEAMKS 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVI 250 L+ +S ER + E++KLL A I+ M F + + +E +L + + + Sbjct: 189 HAPLLEKISVERSFIELDKLLMAPKWRKGILAMIACQAFNYL-PGLVGKEEALQKYLKTL 247 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+ VF+ + +V++ K+ L K + + + + + ++ + Sbjct: 248 AADYVFQDNHQAWAYLLVMLELDQPKAFL---KAWKTSNDFQRRVTMMTSLYQIRQERQL 304 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + +++ L+ L + I + ++ K + G + Sbjct: 305 EKWDIYSFGKDLALLVEDLRQAQGLV------SEVKRIEGLYQELTIHDKHDIVVNGSYL 358 Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + + G+ PG ++G +L +Q + +E + +R+ + Sbjct: 359 IRELGMKPGPQLGMLLNQIEQAIVEGRLVNQREHIEAFVRREL 401 >gi|326435446|gb|EGD81016.1| CCA-adding enzyme [Salpingoeca sp. ATCC 50818] Length = 455 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 113/412 (27%), Positives = 187/412 (45%), Gaps = 25/412 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V+ K + + + + + +VGGAVRD L+ +D D ATT LP + ++ Sbjct: 65 VKQKILGTPAVQQLKHIFQEDHHEFRLVGGAVRDILLERWPKDYDFATTALPQQTQQLLE 124 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +V+ T + +GT+ + +++TTLR D V FT DWK D+ RRD TI Sbjct: 125 SRGVRVVLTGLQHGTVTAVIDNVPYEVTTLRLDHEGAEGTGPVCFTDDWKLDAERRDLTI 184 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NID 183 NA+ D G + DY G + L I F+GD RI ED+LRILR+FRF N + Sbjct: 185 NAMSMDLDGHIFDYFDGRDHLAQEKIVFVGDPAQRIQEDFLRILRYFRFHGKVCRHNNHE 244 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEIS 242 + A +GL+ +S ERIW E++K+L+ + M G+ I +V++ Sbjct: 245 PAQIQAITDNVQGLESVSGERIWMEMSKILKTARAPELVECMQACGVLPHIQLANVEQHH 304 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L +L V ++++ L+ D + +A + L R + F Sbjct: 305 LQRLRHV------HRYELEPATALTALVD--DVQQFEGVAAAWRLSNAERK--LGLFIIQ 354 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + + L ++ + +L +Q I + D W P Sbjct: 355 HRDVDVCMNSAQDLLVDGINRTYVTQL----------CRYQGHLDIAVAMQD---WAVPE 401 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 FP+TG ++++G+ PG +G +L K W S FQL +E+L + ++AS Sbjct: 402 FPITGKKLIQHGLKPGPNMGRVLAALKDNWKQSRFQLGEEELLAQMDSVVAS 453 >gi|291551157|emb|CBL27419.1| uncharacterized domain HDIG [Ruminococcus torques L2-14] Length = 446 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 103/438 (23%), Positives = 192/438 (43%), Gaps = 48/438 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ I++ L + VGG VRDS++ QD DI T+ P+ + IF +T + T Sbjct: 9 VLFIINNLQLAGYDAFAVGGCVRDSILARKPQDWDITTSAKPEAIKEIFRRT----VDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ K +++TT R D D R+ +V FT + D RRDFTINA+ + Sbjct: 65 IEHGTVTVMIGKDSYEVTTYRIDGAYEDSRHPKEVRFTNCLEEDLRRRDFTINAMAYNDD 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D GG+ DL + I+ +GD R ED LRILR RF A + I+ D A + Sbjct: 125 VRLVDVFGGMQDLNHHLIRCVGDPRERFSEDALRILRAVRFSAQL-DFPIEPDTAKAVKE 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK +S+ERI +E+ KLL + +P I GI K + + + + + + Sbjct: 184 LAPNLKNISAERIQTELVKLLTSPHPER-IQDACELGITKVVLPEWDAMVGVKQNTIHHK 242 Query: 253 EQVFEWKIDSL--------LRFIVLISW----------------------QDKKSILSMA 282 V E + +L LR +L + +K ++ Sbjct: 243 YDVAEHTLHTLKHVKRDKYLRLTMLFHDMGKPAMKTTDEKGNDHFKGHALESEKIARTVL 302 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 K+ E + + + + +++ G ++ L + LA + T+ Sbjct: 303 KRLKFDNETIRIVTKLVCYHDYRMEATPANVRRAMNRIGVELFPYYLAVRLADAKSQSTY 362 Query: 343 QDTCFIL----------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 I Q+L + ++G ++++ G+ PG+++G +L + Sbjct: 363 MRREKIENIVEIRNLYKQILMENQCVTLRQLAVSGRELMELGMKPGRELGAMLSELLEYV 422 Query: 393 INSSFQLSQEDLHHLLRK 410 ++ + ++E+L +++ Sbjct: 423 LDDPERNTKENLCKYVKE 440 >gi|223938798|ref|ZP_03630686.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [bacterium Ellin514] gi|223892496|gb|EEF58969.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [bacterium Ellin514] Length = 440 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 98/439 (22%), Positives = 178/439 (40%), Gaps = 43/439 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ L + VGG VRD + +D D+AT +P++V RIF +T IP Sbjct: 7 ATELVRRLQTAGFDAYWVGGCVRDYFLGREPKDFDVATNAVPEQVERIFQRT----IPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 +G + ++ + F I T R++ DGR+ + V D KAD+ RRDFTIN L+ D Sbjct: 63 RKFGVLIVLEKGFEFQIATFRAESDYQDGRHPEQVTFGDPKADASRRDFTINGLFYDPVN 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D+VGG DL+ + ++ IG+ R ED+LR+LR RF A I++ A + Sbjct: 123 DVLHDWVGGEVDLKAKVLRTIGEPAERFAEDHLRLLRAVRFAAQLN-FQIEAKTFAAMVA 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVIE 251 +K +S+ERI E+ K+ + + + G+ +++ ++ I+ +Q Sbjct: 182 NAPKIKTISAERIREELMKVFRPPHAARGLDLLRESGLLEQVLPEIAATITCEQTPDYHP 241 Query: 252 AEQVFEW----------KIDSLLRFIVLISWQDKKSILS--------------------- 280 V+ L + VL+ K S Sbjct: 242 EGSVYNHVRLMLSQLPEDASPELPWAVLLHDVAKPVTASRDPETGSIHFYGHEKVGAEMA 301 Query: 281 --MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + ++ PR+ +++ + K + L + + +L + Sbjct: 302 EVLLQRLKFPRKETDEIVAAVLYHMQFKDVPNMRKSTLRRMIMRETFPLELALHRLDCLG 361 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFP--LTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + D + + K + P L G+D++ G+ PG +G +L + + + Sbjct: 362 SHRMLDHYDFMVEQERELEKKPEILPPLLNGNDLMALGMQPGPAMGELLTELRDKQLQEE 421 Query: 397 FQLSQEDLHHLLRKLIASS 415 + S E +L KL Sbjct: 422 LKTSDEAREWVLEKLKTKP 440 >gi|225571166|ref|ZP_03780164.1| hypothetical protein CLOHYLEM_07254 [Clostridium hylemonae DSM 15053] gi|225159997|gb|EEG72616.1| hypothetical protein CLOHYLEM_07254 [Clostridium hylemonae DSM 15053] Length = 457 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 104/434 (23%), Positives = 189/434 (43%), Gaps = 48/434 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +I++ L ++ VGG VRDS++ + +D DI T+ +P++ +F +T T I Sbjct: 27 DIITTLQAHGFEAYAVGGCVRDSVLGRTPEDWDITTSAMPEQTKSLFPRT----FDTGIE 82 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + F++TT R D D R+ +V FTR K D LRRDFTINA+ +++ Sbjct: 83 HGTVTVLLEHEGFEVTTYRIDGKYEDNRHPKEVTFTRSLKEDLLRRDFTINAMAYNEKDG 142 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D GG+ DL + I+ +GDA R ED LRILR RF A G +I+ + K Sbjct: 143 LTDIFGGMKDLESGLIRCVGDAKERFSEDALRILRGVRFAAQLG-FDIEDETKEGMRKLA 201 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 LK +S+ERI +E+ K++ +K P ++ Y GI + + + + Sbjct: 202 YTLKNISAERIQTELVKMVTSKRPQL-LMTAYELGITRVFLPEFDRMMETEQETPHHMYN 260 Query: 255 VFEWK--------IDSLLRFIVLISWQDKKS----------------------ILSMAKK 284 V E D +LR +L+ K + S+ ++ Sbjct: 261 VGEHTLHAMNNVRPDKILRLTMLLHDTGKPAYKTVDANGVAHFKKHALESENIARSVLRR 320 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK------IFLALHYN 338 + + + + + I++ + G+++ ++ + + + Sbjct: 321 LKFDNDTLHKVSKLVYYHDYRMPARAKNIRRAMNMIGEELFPYYMEVRKADVLAQSEYLR 380 Query: 339 NLTHQDTCFILQVLSDIIHWKKP----LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 Q+ I + +I + +TG D+++ G+ PGK++G L I Sbjct: 381 EEKIQNLSEIESIYKEIKAAGQCVSLKELAVTGKDLIEAGMAPGKEIGEKLSELLALVIE 440 Query: 395 SSFQLSQEDLHHLL 408 ++E L L Sbjct: 441 EPEMNTKEKLLDRL 454 >gi|227513326|ref|ZP_03943375.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus buchneri ATCC 11577] gi|227524470|ref|ZP_03954519.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus hilgardii ATCC 8290] gi|227083199|gb|EEI18511.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus buchneri ATCC 11577] gi|227088340|gb|EEI23652.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus hilgardii ATCC 8290] Length = 405 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 104/399 (26%), Positives = 183/399 (45%), Gaps = 18/399 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL + ++ VGG+VRD+++ + D+DIAT+ P V +F +T Sbjct: 16 EKALPILRKIEAAGYEAYFVGGSVRDTILQRPIHDVDIATSAYPSEVKSLFKRTA----D 71 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ +++TT R++ D R KV F R K D RRDFTINAL Sbjct: 72 TGIEHGTVMILDHGTGYEVTTFRTESGYQDYRRPDKVTFVRSLKEDLKRRDFTINALALS 131 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + GK+ D GGLND+ + I+ +GD R ED LR++R RF + + I+ L Sbjct: 132 ENGKITDLFGGLNDMSKKIIRAVGDPEERFNEDALRMMRAVRFASQL-DFKIEQQTLTGI 190 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + LK ++ ERI SE K++ + N + M +++ + D E L L +++ Sbjct: 191 YDHSELLKKIAVERIHSEFVKMMLGVDAKNGLNLMIKSQLYQFV-PDFSEH-LTVLQKIV 248 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + ++ F + + ++ ++S K++ +I +I F K+ + Sbjct: 249 ATHFDLDNEVQVWALFTSMFQF-NRDQVISFLKRWKTANKIINDVILTTELIFQIKSHKV 307 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++ Y G + + + I +N T D+ +++ + K +TG D+ Sbjct: 308 GNLE--LYKAGKQNVQNAVAII-----SNYTDFDSAKLIKAYDQLPITTKKQLNVTGGDL 360 Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K GI PG K+G L ++ I +L Sbjct: 361 IKRGILNPGPKLGETLEALEKAVILGKINNQDSELIAAA 399 >gi|254449556|ref|ZP_05062993.1| tRNA-nucleotidyltransferase 1 [Octadecabacter antarcticus 238] gi|198263962|gb|EDY88232.1| tRNA-nucleotidyltransferase 1 [Octadecabacter antarcticus 238] Length = 384 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 127/405 (31%), Positives = 192/405 (47%), Gaps = 26/405 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + + LL + VGG VR++L+++ V D+D+AT PD VM++ Sbjct: 3 LSANWLNSDASKAVTGLLVDAGYEVYFVGGCVRNALVDMPVADLDLATNARPDVVMQLAK 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 R KVI T I +GT+ ++ + F+ITT R+D+ TDGR+A V F+ + D++RRDFT+ Sbjct: 63 DARLKVIATGIDHGTVTVVADHRPFEITTFRNDVETDGRHAVVAFSNTLQEDAVRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALY G VID VGG+ DL R ++FI DA RI EDYLRILRFFRF+A +G ++ I Sbjct: 123 NALYCAPDGTVIDPVGGIPDLHARHVRFINDADLRIREDYLRILRFFRFYAWFGDPDQGI 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D+DG A GL+ L+ ER+ +E+ K L A NP A+ M G + Sbjct: 183 DADGFAACAANLDGLEGLAKERVRTELLKTLLAPNPAPAMASMAMCGALGRLLAGAD--- 239 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + L+ +I ++ R + + + L + + Sbjct: 240 VSALAPLIHLQEKLGRPAHLHTRLAAINPG-------DVTSQLRLSKA-----DTLEFTR 287 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 LS+ + L Y G ++ I L + AL T D + Sbjct: 288 IRDGALSVIDAAPLGYNLGSELAIEALMLRAALSGGTFTKID-------MDAAQFGGAQN 340 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +P+T D++ G +G L + WI S F L + DL L Sbjct: 341 YPVTAKDLMP--TYAGPALGARLKQLETAWIASGFTLVKSDLLAL 383 >gi|322391581|ref|ZP_08065050.1| polyA polymerase family protein [Streptococcus peroris ATCC 700780] gi|321145664|gb|EFX41056.1| polyA polymerase family protein [Streptococcus peroris ATCC 700780] Length = 399 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 101/398 (25%), Positives = 184/398 (46%), Gaps = 17/398 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T + Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRT----VDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLEGEEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL N+ ++ +G A R ED LRI+R FRF A G ++++ A Sbjct: 129 GEIVDLFDGLKDLENQILRAVGVASERFNEDALRIMRGFRFQASLG-FELETETFKAMKV 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L + + Sbjct: 188 LTPLLEKISIERTFVEFDKLLLAPYWRVGLSSMIESQAYDYL-PDM-AGSQDKLQSLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + + K + R+ + LS+ E Sbjct: 246 EDNFTFE-SSEQAWAALLWALEVEDAQQFLKHWKTSRQFAKQVQDLLTI------LSLRE 298 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 L + + L L + I + + K + GD ++K Sbjct: 299 GGALSKRDCYQFNLDSLLQAENLRKAQGKEVNPQAITETYESLTFHDKKEMQINGDILIK 358 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 YG PG ++G++L + ++ + ++ +H LR Sbjct: 359 EYGYQPGPELGDVLDEIEYAIVDGVLENDRQAIHDYLR 396 >gi|270291287|ref|ZP_06197509.1| CCA-adding enzyme [Pediococcus acidilactici 7_4] gi|270280133|gb|EFA25969.1| CCA-adding enzyme [Pediococcus acidilactici 7_4] Length = 402 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 103/403 (25%), Positives = 175/403 (43%), Gaps = 20/403 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + N+L + + ++ VGG+VRD+L+ + D+DIAT+ P + +IF +T + Sbjct: 12 EEARNVLQQIEEAGYEAYFVGGSVRDTLLGKPIHDVDIATSAYPAEIKQIFKRT----VD 67 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R +V F R K D +RRDFTINA Sbjct: 68 TGIEHGTVMVLTGEHSYEITTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALR 127 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + VID GL DL+ I+ +GD R ED LR++R RF + + I+ L A Sbjct: 128 EDRTVIDVFDGLTDLKQHKIRAVGDPKARFHEDALRMMRGVRFASQL-DFVIEPQTLAAI 186 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 L +S ER E K++ NP + M + + L + L +L Sbjct: 187 KMNSSLLAKISVERTLVEFQKMMLGTNPNRGLADMVATRLHEYCPGLAGKGAVLQELLAY 246 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 ++ E +I +LL +++ + I K++ E+ + + + Sbjct: 247 PLSQLENETQIWALLAWMLQLRG---AQINRFLKQWKTSNELIRHVTATVRVLSMLDSTG 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + I + + G + +++ L + D L + +TG D Sbjct: 304 VDRI--ILFEAGANNVANAVRVAQILGH------DAQGWLDTYQTLQIKSPKELAVTGKD 355 Query: 370 VVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 ++ I PG ++G IL K IN E L RKL Sbjct: 356 LIANQIITPGPQMGRILNSLKAMVINDQLPNQPEALFTAARKL 398 >gi|270009743|gb|EFA06191.1| hypothetical protein TcasGA2_TC009040 [Tribolium castaneum] Length = 425 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 124/410 (30%), Positives = 204/410 (49%), Gaps = 20/410 (4%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H F D +L + S+ + + I GGAVRD L L D+D ATT P ++ +F+ Sbjct: 21 HSLFTD-ELKTLASMFKRYGYEIRIAGGAVRDLLSGLRPTDLDFATTATPVQMKEMFTAE 79 Query: 67 RYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 ++I +GTI K+ F++TTLR D++TDGR A+V FT DW D+LRRD TI Sbjct: 80 NVRMINMNGEKHGTITPRINDKENFEVTTLRIDVVTDGRRAEVQFTTDWLLDALRRDLTI 139 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--I 182 N+++ D +G V DY G DL+ ++F+GDA RI EDYLRILR+FRF+ ++ Sbjct: 140 NSMFLDFEGAVYDYFYGYEDLKVHKVQFVGDAATRIKEDYLRILRYFRFYGRIAKEADKH 199 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + L A + K+GL +S ERIW E+ K+LE + ++ + + G+ I L + + Sbjct: 200 EEGTLNAIRENKEGLGNISGERIWMELRKILEGNFAGDLLIKIIDCGLSSYIGLP-ERPN 258 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 +++L +V + K+ + + QD L+ K S+ I+ Sbjct: 259 VEELKKVWQ--NCGHLKLHPITLLCATLRNQDDAVALNSRLKLSVFERDLALFITEHRAP 316 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +P + + + V + L Y N H L + +W P Sbjct: 317 KPHVKPLMPYQQLVLKINNKNVF---QYVVEVLKYINSPH---------LEEFQNWTIPK 364 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 FP+TG+ + + G+ G+K+G +L + W + +++S EDL + ++ Sbjct: 365 FPVTGNMLKEVGVESGRKMGLVLTELRNYWADQEYKISAEDLLKQVPNIL 414 >gi|167747291|ref|ZP_02419418.1| hypothetical protein ANACAC_02005 [Anaerostipes caccae DSM 14662] gi|167653269|gb|EDR97398.1| hypothetical protein ANACAC_02005 [Anaerostipes caccae DSM 14662] Length = 449 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 111/443 (25%), Positives = 192/443 (43%), Gaps = 51/443 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I++ L + ++ +VGG VRD ++ D DI T+ P +V IFS T I Sbjct: 8 EKAKQIINQLEQAGYEAYVVGGPVRDCILGKCPTDWDITTSASPYQVKEIFSYT----ID 63 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ ++ K+ F++TT R D D R + V FT+ K D LRRDFTINA+ + Sbjct: 64 TGIAHGTVTVMMGKEPFEVTTYRVDGEYRDHRRPEEVCFTKSLKEDLLRRDFTINAMAYN 123 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + + DY GG+ DL+ +TI+ +GDA R ED LRILR RF A G I+ + A Sbjct: 124 DRDGLTDYYGGVEDLKKKTIRCVGDARRRFDEDALRILRALRFQAQLG-FVIEEETKQAI 182 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248 K K LK +S+ERI +E+ KLL + +P + Y+ G+ K + + + + Sbjct: 183 QKQAKFLKDISAERIQTELTKLLLSDHPETILDA-YDLGVTKVVLPEFDRMMETPQNNPH 241 Query: 249 ------VIEAEQVFEWKIDSLLRFIVLISWQDKKSI---------------------LSM 281 V E + + D +LR+ +L+ K + Sbjct: 242 HCYNVGVHTVEALKNTEPDHILRWTMLLHDVGKPEARVEGKIKDSFQGHNTIGEEVSRKI 301 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 K+ + + + + KK + ++ + + L + +++ Sbjct: 302 LKRLKFDNQTIKQVTRLVYWHDVRFGSLDEVSKKTVRRWASRISVPLFEKLLKVQQADIS 361 Query: 342 HQDT--------------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 Q T ++ + + L G D++ G+ PG+++G +L Sbjct: 362 AQSTFMQEEKQQILDRTRLLFEEIKEEEDCLQVKDLALDGKDLISLGMKPGREIGEMLAG 421 Query: 388 CKQEWINSSFQLSQEDLHHLLRK 410 + + + +E L +RK Sbjct: 422 LLELVLEDPAKNKREVLEQAVRK 444 >gi|187932836|ref|YP_001885873.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum B str. Eklund 17B] gi|187720989|gb|ACD22210.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum B str. Eklund 17B] Length = 432 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 105/427 (24%), Positives = 197/427 (46%), Gaps = 38/427 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D+ IL L ++ IVGG VRDS++N +D DI T P+ V+++F KVI T Sbjct: 10 DVRFILDRLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVIKLFD----KVILT 65 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 + +GT+ ++ + +++TT R D D R+ K V F + K D RRDFTINA+ ++ Sbjct: 66 GVKHGTVTVLINSEGYEVTTYRMDGEYEDSRHPKKVNFVSNLKEDLARRDFTINAMAYNK 125 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +IDY G++DL+ + IK +G++ R ED LR+LR RF + +I ++ L + Sbjct: 126 VDGLIDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQLN-FSISNETLNSIK 184 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI- 250 ++ +K +S ERI E NK+L + I + G+ + IF ++ ++ ++ + Sbjct: 185 NLRENIKNISKERIREEFNKILMSN--TKGIDILRETGLMEYIFPEIIKLYDFKIDNMYY 242 Query: 251 -------------EAEQVFEWKIDSLLRFIVLISWQDKK----SILSMAKKFSLPREIRY 293 E E K+ L ++ ++ +D + I K+F + Sbjct: 243 NDNLYTHTIKATEEIENKLHLKLTMLFHNLLKMNNEDMEYTILQIKKFLKEFKYDNDTVN 302 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA--LHYNNLTHQDTCFILQV 351 + + + EIK++ L + LK+ + L N L ++ L Sbjct: 303 KVTDLTR-YMHNSLNTKLEIKQMLNLINLDLFEDLLKVKESEILSQNPLYKEERLSHLLY 361 Query: 352 LSDIIHWKKP--------LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 + + + ++G D++ G+ GK +G +L + +N+ ++ Sbjct: 362 IRENLKDVIFNNECFNLKDLNISGKDLISLGLEKGKNIGEMLNELLELVMNNPGLNDKQV 421 Query: 404 LHHLLRK 410 L ++++ Sbjct: 422 LIDIVKE 428 >gi|307704397|ref|ZP_07641310.1| RNA nucleotidyltransferase [Streptococcus mitis SK597] gi|307622041|gb|EFO01065.1| RNA nucleotidyltransferase [Streptococcus mitis SK597] Length = 394 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 98/398 (24%), Positives = 181/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLQRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLAAMIESQAYDYL-PDMAA-SQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILTLREKGELSN 299 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y + +++ + A S IH KK + G + + Sbjct: 300 --RDCYRFDLDLLLQAENLRQA---QGKPVNPQAITETYQSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEYAIVDGELENDRQAIHAYLRE 392 >gi|307705974|ref|ZP_07642799.1| RNA nucleotidyltransferase [Streptococcus mitis SK564] gi|307620484|gb|EFN99595.1| RNA nucleotidyltransferase [Streptococcus mitis SK564] Length = 394 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 181/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDMAA-SQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ K + R+ + ++ Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILALRE--KGEL 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A S IH KK + G + + Sbjct: 298 SKRDCYRFDLDLLLQAESLRQA---QGKPVNPQAITETYQSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392 >gi|195978215|ref|YP_002123459.1| tRNA CCA-pyrophosphorylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974920|gb|ACG62446.1| CCA-adding enzyme, tRNA nucleotidyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 398 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 95/401 (23%), Positives = 188/401 (46%), Gaps = 20/401 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ + + ++ VGG+VRDSL+N + D+DIA + P+ IF +T I Sbjct: 8 ALPIVKKIKQAGFEAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIFPRT----IDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 64 IEHGTVLVLENGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL+++ ++ +G R ED LRI+R FRF A + +I+++ A Sbjct: 124 GQIIDIFNGLEDLKHKLLRAVGRPQERFEEDALRIMRGFRFAASL-DFDIEAETFEAMKS 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVI 250 L+ +S ER + E++KLL A I+ M F + + +E +L + + + Sbjct: 183 HAPLLEKISVERSFIELDKLLMAPKWRKGILAMIACQAFNYL-PGLVGKEEALQKYLKTL 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+ VF+ + +V++ K+ L K + + + + + ++ + Sbjct: 242 AADYVFQDNHQAWAYLLVMLELDQPKAFL---KAWKTSNDFQRRVTMMTSLYQIRQERQL 298 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + +++ L+ L + + + ++ K + G + Sbjct: 299 EKWDIYSFGKDLALLVEDLRQAQGLV------SEAKRVESLYQELTIHDKHDIVVNGSYL 352 Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + + G+ PG ++G +L +Q + +E + +R+ Sbjct: 353 IRELGMKPGPQLGMLLNQIEQAIVEGRLVNQREHIEAFVRR 393 >gi|254470240|ref|ZP_05083644.1| poly(A) polymerase protein [Pseudovibrio sp. JE062] gi|211960551|gb|EEA95747.1| poly(A) polymerase protein [Pseudovibrio sp. JE062] Length = 406 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 138/409 (33%), Positives = 222/409 (54%), Gaps = 11/409 (2%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + Q W S + +L + D + VGG VR+SL+ V D+DIA T LPD V+ Sbjct: 1 MTKLQQRGWLDSSAVQRAFDVLEQDGDVARAVGGTVRNSLLGEVVDDVDIACTALPDVVL 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 K IPT + +GT+ ++ + ++T LR D+ T GR+A V F RDW D+ RR Sbjct: 61 ARADAAGVKAIPTGVDHGTVTLVIESQPIEVTCLREDVETHGRHATVKFGRDWVKDAQRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFT+NALY D+ G++ D +GGL+D NR ++FIGDA RI EDYLRILRFFRFFA YG+ Sbjct: 121 DFTMNALYVDRYGELFDPLGGLDDCLNRHLRFIGDARARIREDYLRILRFFRFFATYGQG 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I++DG A ++ K+GL LS ERI E+ + L A L+A+ M G I + I + + Sbjct: 181 EINADGYAACVELKEGLSHLSKERITKEVLRTLGAPRVLDALELMEQGVILQLILGE--D 238 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 + +L+++++ + + E + +LR + + +S + S ++ R + + Sbjct: 239 AASARLARLLKLDGLPEAANEPVLRLGGVAG-----AAVSQHLRLSNAQKKRIEVAAEIA 293 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 E+K L +G ++ + + N QD + ++L+ +W+ Sbjct: 294 KALRVTGHQTQELKALLVAHGANAVVD----GVLTAWMNGDLQDEAVLRELLAFAQNWEI 349 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P FPLTG ++ GIP G ++G + +Q W ++ +Q S E+L ++ Sbjct: 350 PSFPLTGKMMIAGGIPAGPEMGAAMKLAQQIWASADYQCSAEELMAKVK 398 >gi|28210893|ref|NP_781837.1| poly(A) polymerase [Clostridium tetani E88] gi|28203332|gb|AAO35774.1| poly(A) polymerase [Clostridium tetani E88] Length = 451 Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 109/440 (24%), Positives = 188/440 (42%), Gaps = 45/440 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ I+ +L + ++ VGG +RDSL+N D DI T ++V++IF + V+ Sbjct: 12 KEVKYIIDILEEHGYEAYAVGGCIRDSLLNRIPHDWDITTDAKGEQVIKIFKSLDFNVVK 71 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I YGT+ +I ++ITT R D DGR+ + V FT + K D RRDFT+NA+ + Sbjct: 72 TGIRYGTVTLIINSIGYEITTYRIDGNYLDGRHPEKVEFTNNLKEDLSRRDFTVNAMAYN 131 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + + DY G DL+N+ IK +GD R ED LR++R RF A + NI+ + A Sbjct: 132 HKKGLADYYNGREDLKNKIIKSVGDPLKRFSEDALRMIRGVRFSAQL-DFNIEENTKEAI 190 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD---VQEISLDQLS 247 K +K +S ERI E NK+L + N I + G+ K + + I + Sbjct: 191 KKLSSNIKNVSVERIREEFNKILLSSNTYK-IKELEEYGLLKNFLPEYAFTKRIVQNNQY 249 Query: 248 QVIEAEQVFEWKIDSL-----LRFIVLISWQDKKSIL----------------------S 280 + E+ I+++ LR +L+ K S Sbjct: 250 HIYNLEEHLICSIENVDKKLHLRLTMLLHDIGKSQCKTTDNKGVDHFCGHEKISSEMAGS 309 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-- 338 + ++ + + S + + + IKKL G ++ LK+ Sbjct: 310 ILRRLKYDNKTIDKVTSLIKYH-HYPIENKRNIKKLLNKIGLELFRDLLKVKEGDIKAQN 368 Query: 339 ----NLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 ++ +VL +I+ K+ + G D++ G G+ +G L + Sbjct: 369 PMFFKKRYESILEAKKVLEEILKDKECFTLKDLAINGKDLIDLGYKDGRNIGKTLNTLLE 428 Query: 391 EWINSSFQLSQEDLHHLLRK 410 + +E+L ++K Sbjct: 429 LVLEKPELNKKEELIKYIKK 448 >gi|126730078|ref|ZP_01745890.1| polyA polymerase family protein [Sagittula stellata E-37] gi|126709458|gb|EBA08512.1| polyA polymerase family protein [Sagittula stellata E-37] Length = 387 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 127/410 (30%), Positives = 194/410 (47%), Gaps = 29/410 (7%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ V W +L++L G ++ VGG VR++L+ V D+D++T P+RV+ Sbjct: 1 MTRVTGDWLTAPGAQAVLTMLEAGGHRAYAVGGCVRNALLGEPVADVDVSTDARPERVIE 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + +PT I +GT+ I+ +++TT R+D+ TDGR A V F D D++RRD Sbjct: 61 LARAAGLRAVPTGIDHGTVTIVANGTGYEVTTFRADIETDGRRAVVRFADDVAEDAVRRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-- 179 FT+NALY D+ G++ D +GGL DL R ++FI DA RI EDYLRILRFFRF+A YG+ Sbjct: 121 FTMNALYVDRHGEITDPLGGLPDLMARRLRFIEDADRRIREDYLRILRFFRFYAWYGDPQ 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D+D L A GL+ LS ER+ E+ KL A +PL A M G+ + + Sbjct: 181 AGVDADALAAIAANLDGLETLSRERVGQELLKLFAAPDPLAATAVMARAGVLQAVLPGAS 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 E L L +E E + D L R + ++ + + + L + Sbjct: 241 ETPLGPL---LEHETTLDLPPDPLRRLAAIGAFDGEA--------LRFSKVQKKRLEQY- 288 Query: 300 NCNFNQKTLSIP-EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Q +S P + ++ Y + + L + A L L I Sbjct: 289 -----QGLISDPIPLPEVAYRFTADMARDVLVLRAATFGAPLD-------TSALPRIKRA 336 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 K FP+ D+ G +G L + EWI S F L + L Sbjct: 337 AKARFPVAASDLKDRF--QGPALGEALRRLEAEWIASDFALDKATLLSRA 384 >gi|302383755|ref|YP_003819578.1| polynucleotide adenylyltransferase region [Brevundimonas subvibrioides ATCC 15264] gi|302194383|gb|ADL01955.1| Polynucleotide adenylyltransferase region [Brevundimonas subvibrioides ATCC 15264] Length = 402 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 136/418 (32%), Positives = 204/418 (48%), Gaps = 22/418 (5%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDK--SCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 + +H W S I ++ L + VGG +R++L+ V DIDIAT + P+ Sbjct: 3 TRLERHDWLTSSATIAVMDALEAAGGPDCARFVGGCIRNALVGRPVDDIDIATRLKPEDA 62 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 M KV+PT +++GT+ + ++ ++ITTLR D+ TDGR A V FT DW D+ R Sbjct: 63 MAALKAAGLKVVPTGLAHGTVTAVSERRPYEITTLRRDVETDGRRAVVAFTDDWAEDAAR 122 Query: 120 RDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDF +NALYAD+ G + D G G+ D + F+GD RI EDYLRILRFFRFFA YG Sbjct: 123 RDFRLNALYADRTGAIFDPTGQGVEDALAGRVVFVGDPDRRIEEDYLRILRFFRFFAWYG 182 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 D++GL A GL LS+ER+ E+ KLL A +P A+ M G+ + + V Sbjct: 183 RAAPDAEGLAACAAHADGLARLSAERVSKELLKLLAAPDPRAAVAAMRTAGVLERLVPTV 242 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 E + D +LR L+ D + + A+ LPR + L + Sbjct: 243 PSAR--------AFEAMVALSDDPVLRLSALLPD-DAVVVTAAAQALRLPRVMEARLGAA 293 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + T + ++ L Y G + ++ +L L D VL+ + W Sbjct: 294 AASPLDPATP-VATLRALTYRLGRQAVLDRL-------IRGLAEADGQGDRSVLTTVADW 345 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P P+ G D+ K G+ PG G IL + EW+ + F + L +L+A+ + Sbjct: 346 PVPRMPVGGRDLAKLGVEPGPDTGRILKAFEDEWVAADFPATGH--VERLSRLVAARR 401 >gi|331265998|ref|YP_004325628.1| tRNA nucleotidyltransferase [Streptococcus oralis Uo5] gi|326682670|emb|CBZ00287.1| tRNA nucleotidyltransferase [Streptococcus oralis Uo5] Length = 394 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 104/398 (26%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL+N+ ++ +G A R ED LRI+R FRF A G K ++S+ VA Sbjct: 124 GEIIDLFHGLEDLKNQVLRAVGVASERFNEDALRIMRGFRFQASLGFK-LESETFVAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRVGLASMIESRAYDYL-PDM-AGSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + K K + R+ + ++ + Sbjct: 241 ETEFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILALREEGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + ++ + A S IH KK + G + + Sbjct: 298 SKRDCYRFDLDSLLQAENLRQA---QGKEVNPQAITETYHSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392 >gi|83953100|ref|ZP_00961822.1| polyA polymerase family protein [Sulfitobacter sp. NAS-14.1] gi|83842068|gb|EAP81236.1| polyA polymerase family protein [Sulfitobacter sp. NAS-14.1] Length = 388 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 127/407 (31%), Positives = 196/407 (48%), Gaps = 26/407 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +W D D + + G VGG VR++L+ ++ D+D++T LP+RVM Sbjct: 1 MTLPASTRWLSDPDAQAVCDAVTDGGHAIYFVGGCVRNALLGVADSDVDMSTNALPERVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + ++ K +PT + +GT+ ++ K F++TT R D+ TDGR A V F+ D+LRR Sbjct: 61 ALAARAGLKAVPTGVEHGTVTVVSGGKGFEVTTFRRDVETDGRRAVVAFSDSILDDALRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE- 179 DFT+NALYAD QG+VID + GL DLR R ++FI DA RI EDYLR LR+FRF A Y + Sbjct: 121 DFTMNALYADAQGRVIDPLEGLVDLRARRVRFIEDAAQRIREDYLRTLRYFRFCAWYADP 180 Query: 180 -KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + D + L A GL+ LS+ERI +E+ KLL A +P A+ M G+ I Sbjct: 181 VEGFDPEALAAIAAHIDGLERLSAERIGAELTKLLTAPDPAPAVAAMRQTGVLGAILPGS 240 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + L V+ EQ+ + +D R L + ++ L + +L Sbjct: 241 DD---RWLGMVVHFEQLLQMSVDWRRRLAAL-------GGEDIDQRLRLSKADAKYL--- 287 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + + + G + A + + L +T VL I Sbjct: 288 --HRLKEAAYGAETVAAIAHTDGGDMARAVVVLRACL-------SETPPDAAVLDRIAQA 338 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 + +FP+ D++ G +G L K WI S F +++ L Sbjct: 339 EAAVFPVQAADLMPE--YTGPALGRRLAELKALWIASGFAATRDSLL 383 >gi|225870622|ref|YP_002746569.1| CCA-adding enzyme [Streptococcus equi subsp. equi 4047] gi|225700026|emb|CAW94050.1| CCA-adding enzyme [Streptococcus equi subsp. equi 4047] Length = 404 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 95/403 (23%), Positives = 188/403 (46%), Gaps = 20/403 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ + + ++ VGG+VRDSL+N + D+DIA + P+ IF + I Sbjct: 14 ALPIVKKIKQAGFEAYFVGGSVRDSLLNRPIHDVDIAASCYPEETKAIF----LRTIDVG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 70 IEHGTVLVLENGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+++ ++ +G R ED LRI+R FRF A + +I+++ A Sbjct: 130 GQVIDIFNGLEDLKHKLLRAVGRPQERFEEDALRIMRGFRFAASL-DFDIEAETFEAMKS 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVI 250 L+ +S ER + E++KLL A I+ M F + + +E +L + + + Sbjct: 189 HAPLLEKISIERSFIELDKLLMAPKWRKGILAMVACQAFNYL-PGLVGKEEALQKYLKTL 247 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+ VF+ + +V++ K+ L K + + + + + ++ + Sbjct: 248 AADYVFQDNHQAWAYLLVMLELDQPKAFL---KAWKTSNDFQRRVTMMASLYQIRQERQL 304 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + +++ L+ L + + + ++ K + G + Sbjct: 305 EKWDIYSFGKDLALLVDDLRQAQGLV------SEAKRVESLYQELTIHDKHDIVVNGSYL 358 Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + + G+ PG ++G +L +Q + +E + +R+ + Sbjct: 359 IRELGMKPGPQLGMLLNQIEQAIVEGRLVNQREHIEAFVRREL 401 >gi|304385035|ref|ZP_07367381.1| poly A polymerase [Pediococcus acidilactici DSM 20284] gi|304329229|gb|EFL96449.1| poly A polymerase [Pediococcus acidilactici DSM 20284] Length = 402 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 102/403 (25%), Positives = 176/403 (43%), Gaps = 20/403 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + N+L + + ++ VGG+VRD+L+ + D+DIAT+ P + +IF +T + Sbjct: 12 EEARNVLQQIEEAGYEAYFVGGSVRDTLLGKPIHDVDIATSAYPAEIKQIFKRT----VD 67 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R +V F R K D +RRDFTINA Sbjct: 68 TGIEHGTVMVLTGEHSYEITTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALR 127 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + VID GL DL+ + I+ +GD R ED LR++R RF + + I+ L A Sbjct: 128 EDRTVIDVFDGLTDLKQQKIRAVGDPKARFHEDALRMMRGVRFASQL-DFVIEPQTLAAI 186 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 L +S ER E K++ NP + M + + L + L +L Sbjct: 187 KMNSSLLAKISVERTLVEFQKMMLGTNPNRGLADMVATRLHEYCPGLAGKGAVLQELLAY 246 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 ++ E ++ +LL +++ + I K++ E+ + + + Sbjct: 247 PLSQLENETQVWALLAWMLQLRG---AQINRFLKQWKTSNELIRHVTATVRVLSMLDSTG 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + I + + G + +++ L + D L + +TG D Sbjct: 304 VDRI--ILFEAGANNVANAVRVAKILGH------DAQGWLDTYQTLQIKSPKELAVTGKD 355 Query: 370 VVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 ++ I PG ++G IL K IN E L RKL Sbjct: 356 LIANQIITPGPQMGRILNSLKAMVINDQLPNQPEALFTAARKL 398 >gi|312866731|ref|ZP_07726945.1| tRNA adenylyltransferase [Streptococcus parasanguinis F0405] gi|311097812|gb|EFQ56042.1| tRNA adenylyltransferase [Streptococcus parasanguinis F0405] Length = 398 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 93/406 (22%), Positives = 189/406 (46%), Gaps = 17/406 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF +T + Sbjct: 7 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFDRT----VDV 62 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 63 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G+++D GL DL N+ ++ +G H R ED LRI+R FRF A G ++ A Sbjct: 123 KGEIVDLFHGLEDLENKVLRAVGLPHERFNEDALRIMRGFRFQASLG-FELEEATFDAMK 181 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L+ +S ER + E +KLL + + M G + + ++++ + + ++ + Sbjct: 182 ECAPLLEKISVERTFIEFDKLLLSPFWRQGLEAMLASGAYHYL-PEMKDRK-EAIERLFD 239 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E + + S + L+ + + I KK+ R+ + ++ S+ Sbjct: 240 IELEYTFST-SEQAWAALVLALEIQDIPKFFKKWKTSRDFAKTVEQIVEILKLRENGSLD 298 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + Y Y ++++ ++ A + D I +V + K + G ++ Sbjct: 299 T--RACYKYEKRLLLVAEELREAYALSV----DYLAIERVYDSLTIHDKHEVVVNGGILI 352 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 K YG PG +G +L + ++ +E + ++++ + Sbjct: 353 KEYGFQPGPALGEMLTKIEYAIVDGELANEKEAIIAYIQQVKEEEK 398 >gi|289168379|ref|YP_003446648.1| tRNA nucleotidyltransferase [Streptococcus mitis B6] gi|288907946|emb|CBJ22786.1| tRNA nucleotidyltransferase [Streptococcus mitis B6] Length = 399 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 100/398 (25%), Positives = 182/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G A R ED LRI+R FRF A G ++S+ A Sbjct: 129 GEIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELESETFKAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A +V M + + D+ + D+L+++ Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLVSMIESQAYDYL-PDMAA-NQDKLNRLFNL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ K + R+ + ++ Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILALRE--KGEL 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A S IH KK + G + + Sbjct: 303 SKRDCYRFDLNLLLQAENLRQA---QGKEVNPQVITETYQSLTIHDKKEIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEYAIVDGELENDRQAIHAYLRE 397 >gi|254556742|ref|YP_003063159.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum JDM1] gi|254045669|gb|ACT62462.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum JDM1] Length = 407 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 23/409 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ + ++ VGG VRD+++ + D+DIAT+ P V ++F +T + T Sbjct: 13 AKPIIETIEAAGYEAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFKRT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ ++ TT R++ D R +V F R K D RRDFTINAL Sbjct: 69 IEHGTVMILDHGNGYETTTFRTESGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTAN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL D+ ++ +G A R ED LR++R RF + G I+S A Sbjct: 129 GEVIDLFDGLADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLG-FTIESQTEQAIAD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L ++ ER E KLL ++P+ + + +++ + DQ + + + Sbjct: 188 NAALLAKIAVERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYM-----PAMADQEAMLRQL 242 Query: 253 EQVFEWKIDSLLRFIVLISW----QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + W + S+ L+SW D+ ++ + K + E+ + + K Sbjct: 243 MALPAWHLPSIESTWTLLSWTMQRTDEAAVRQLLKTWKTSNELINHVTAAIKALMALKHN 302 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++ FY G + + ++ L + QD ++Q + + K + G Sbjct: 303 GQLTAQENFYT-GLEALKTANQVATILGFG----QDQAQLVQAYASLPIHDKHELAINGG 357 Query: 369 DVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 D++K + PG +G IL C Q + Q+ L R ++A S+ Sbjct: 358 DLLKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405 >gi|184155361|ref|YP_001843701.1| tRNA CCA-pyrophosphorylase [Lactobacillus fermentum IFO 3956] gi|226702069|sp|B2GC39|CCA_LACF3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|183226705|dbj|BAG27221.1| putative poly(A) polymerase [Lactobacillus fermentum IFO 3956] Length = 400 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 170/404 (42%), Gaps = 16/404 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS+T + Sbjct: 11 EPARPILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFSRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R V F R K D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALK 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L Sbjct: 127 EDGTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGM 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ ++ ERI E KLL K N + M + ++ ++E L + Sbjct: 186 SQNAALLEKIAVERIQVEFEKLLLGKAVQNGLAAMLDTKLYLHC-PGLKEGG-QGLQYLA 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + + DK + K + L + + +K + Sbjct: 244 QQPLTLNNATQAWGALAICL-GLDKNQLRPFLKGWKLSNGLITAVS--RAVPLVEKLTTK 300 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G + + + I +L D + + + L G D+ Sbjct: 301 TAGASDLYQAGQQAVADAVVIANSLGGQV----DPQAVQAAYQALPIKESGELALNGGDL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +K G+ PG +G L ++ + + L +L+ + Sbjct: 357 IKAGVKPGPAMGKALTTLTKQVVEGQLANDYQTLLKAAGELLKA 400 >gi|227515169|ref|ZP_03945218.1| tRNA adenylyltransferase [Lactobacillus fermentum ATCC 14931] gi|260662126|ref|ZP_05863022.1| polynucleotide adenylyltransferase region [Lactobacillus fermentum 28-3-CHN] gi|227086501|gb|EEI21813.1| tRNA adenylyltransferase [Lactobacillus fermentum ATCC 14931] gi|260553509|gb|EEX26401.1| polynucleotide adenylyltransferase region [Lactobacillus fermentum 28-3-CHN] Length = 400 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 169/404 (41%), Gaps = 16/404 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS+T + Sbjct: 11 EPARPILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFSRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R V F R K D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALK 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L Sbjct: 127 EDGTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGM 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ ++ ERI E KLL K N + M + ++ ++E L + Sbjct: 186 SQNAALLEKIAVERIQVEFEKLLLGKAVQNGLATMLDTKLYLHC-PGLKEGG-QGLQYLA 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + + DK + K + L + + +K + Sbjct: 244 QQPLTLNNATQAWGALAICL-GLDKNQLRPFLKGWKLSNGLITAVS--RAVPLVEKLTTK 300 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G + + + I +L D + + + L G D+ Sbjct: 301 AAGASDLYQAGQQAVADAVVIANSLGGQV----DPQAVQAAYQALPIKESGELALNGGDL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +K G PG +G L ++ + + L +L+ + Sbjct: 357 IKAGFKPGPAMGKALTTLTKQVVEGQLANDYQTLLKAAGELLKA 400 >gi|300173420|ref|YP_003772586.1| CCA-adding enzyme [Leuconostoc gasicomitatum LMG 18811] gi|299887799|emb|CBL91767.1| CCA-adding enzyme [Leuconostoc gasicomitatum LMG 18811] Length = 403 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 185/406 (45%), Gaps = 18/406 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D +L L ++ VGGAVRD L+N + D+DIAT+ P+ V +F+KT I T Sbjct: 12 DAQPVLKTLENAGFEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEVKSLFNKT----IDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ + ++ITT R++ TD R KV F R K D RRDFTINAL + Sbjct: 68 GIQHGTVMALDHGAGYEITTFRTESTYTDFRRPDKVTFVRSLKEDLKRRDFTINALAMNY 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G ++D GL+DL+N ++ +GDA R ED LR++R RF A E ID + A Sbjct: 128 SGNIVDLFDGLSDLKNGIVRAVGDAEVRFTEDALRMMRALRFSAQL-EFAIDFNTQQALR 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K L+ ++ ERI E K+L ++ + + D+ L ++ +E Sbjct: 187 KLAPNLEKIAVERIRVEFEKILMGSQASESLQIASRDQVMAYLPGDIGTWDLSRIILDLE 246 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + Q +I + + + S ++K I + + + RE + +T+ Sbjct: 247 SNQANTTQI-AWIHLLAR-SDLNEKKITQFMRMWKMSREDIKVTSLIVPLVRHIETV--- 301 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + F LY +V + + L+ + + I + + K + G D++ Sbjct: 302 ---RKFQLY--QVYAYRDILLSVLYLMGVPDEKVQQIDTNFATLPISKSADMAINGADLI 356 Query: 372 KYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G + PG ++G L ++ + + + L +++L + + Sbjct: 357 MTGLVKPGPEMGRTLKMMEKAVVLGQLENKHDVLLTYIKELKSDDK 402 >gi|299783194|gb|ADJ41192.1| Polynucleotide adenylyltransferase region [Lactobacillus fermentum CECT 5716] Length = 400 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 169/404 (41%), Gaps = 16/404 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ILS + + ++ VGG VRD+++NL + DIDIAT+ P + +IFS+T + Sbjct: 11 EPARPILSRIEEAGFEAYFVGGCVRDTILNLPIHDIDIATSAYPAEIKQIFSRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R V F R K D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDFRRPDSVTFVRSLKEDLQRRDFTINALALK 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G V+D GL DL+ IK +GD R ED LR++R RF A G + I+ L Sbjct: 127 EDGTVVDLFDGLGDLKRHLIKAVGDPAERFHEDALRMMRAARFAAKLGFQ-IEPGTLAGM 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ ++ ERI E KLL K N + M + ++ ++E L + Sbjct: 186 SQNAALLEKIAVERIQVEFEKLLLGKAVQNGLATMLDTKLYLHC-PGLKEGG-QGLQYLA 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + + DK + K + L + + +K + Sbjct: 244 QQPLTLNNATQAWGALAICL-GLDKNQLRPFLKGWKLSNGLITAVS--RAVPLVEKLTTK 300 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G + + + I +L D + + + L G D+ Sbjct: 301 XAGASDLYQAGQQAVADAVVIANSLGGQV----DPQAVQAAYQALPIKESGELALNGGDL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +K G PG +G L ++ + + L +L+ + Sbjct: 357 IKAGFKPGPAMGKALTTLTKQVVEGQLANDYQTLLKAAGELLKA 400 >gi|325479731|gb|EGC82821.1| tRNA adenylyltransferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 451 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 113/433 (26%), Positives = 187/433 (43%), Gaps = 43/433 (9%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I L + VGG VRDS++ ++DID+ T PD + +FS K+I Sbjct: 12 EITKRLEAKGYPTYPVGGCVRDSILGRKIKDIDLTTLARPDEIKEVFSNE--KLIDIGRK 69 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTIK+I + + F+ITT RSD DGR+ ++ F+ + D RRDFTINA+ ++GK Sbjct: 70 FGTIKVISKGEEFEITTFRSDGKYLDGRHPDEISFSDNLIDDLKRRDFTINAMAY-EKGK 128 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID G DL + ++ +G+ + RI EDYLR LR RF G ID D A + Sbjct: 129 IIDPFSGRCDLEKKVVRAVGNPYERIEEDYLRSLRAVRFATRLG-FEIDRDLKKAIRENS 187 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + ++S ERI EI+K+L P I + + +IF ++ Sbjct: 188 TNINLISKERIRDEISKILIEDKPSRGIRLLDELCLLDKIFPELARTKGFDQHSSHHNLD 247 Query: 255 VFEWKI--------DSLLRFIVLIS----------------------WQDKKSILSMAKK 284 V+E + D + R L +K + K Sbjct: 248 VYEHSLKVVDRTDSDLVTRMAALYHDVGKVGTFFLDENGEGRFFGHQNLSEKLLEKRLKD 307 Query: 285 FSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVM-----IAKLKIFLALHYN 338 P++ S + + T + I+KL G+ + + + I +H + Sbjct: 308 LRFPKKFIEDAKSLVKRHMDCSNTYTKKSIRKLLRRIGEANLRRLFNLQRADILATVHRD 367 Query: 339 NLT-HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + +VL D K+ + G+D++ G GK +G+IL ++ I+ Sbjct: 368 TSNIDLGESILEEVLEDNTPKKRSDLAINGNDLIDLGYHEGKIIGDILNKIEEAIIDDKL 427 Query: 398 QLSQEDLHHLLRK 410 + ++ED+ +RK Sbjct: 428 ENNREDILAFVRK 440 >gi|166033172|ref|ZP_02236001.1| hypothetical protein DORFOR_02894 [Dorea formicigenerans ATCC 27755] gi|166027529|gb|EDR46286.1| hypothetical protein DORFOR_02894 [Dorea formicigenerans ATCC 27755] Length = 443 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 109/443 (24%), Positives = 178/443 (40%), Gaps = 48/443 (10%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 K ++ I+ L ++ VGG VRDS++ QD DI T+ +P +F K Sbjct: 3 NRKIVLPENVKKIIETLQTHGYEAYAVGGCVRDSVLGRIPQDWDITTSAMPQETKTLFDK 62 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFT 123 T T I +GTI ++ + +++TT R D D R+ +V FTR K D LRRDFT Sbjct: 63 T----FDTGIEHGTITVLLDHEGYEVTTYRIDGKYEDNRHPKEVTFTRSLKEDLLRRDFT 118 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 INA+ + ++D GG+ DL+ I+ +GDA R ED LRILR RF A G ID Sbjct: 119 INAMAYNDADGLVDIFGGMEDLKKGVIRCVGDATARFSEDALRILRGIRFAAQLG-FEID 177 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + +A + L+ +S+ERI E+ K L + P + + Y GI K+ + + Sbjct: 178 DEARMAMKELAPTLRKISAERIQVELVKTLVSDRP-DMLRTAYELGITKQFLPEFDLLMK 236 Query: 244 DQLSQVIEAEQVFEWK--------IDSLLRFIVLISWQDKKS------------------ 277 + V E D +LR +L+ K Sbjct: 237 TEQETPHHMYNVGEHTLHALMRVRPDRILRITMLLHDMGKPEYKTMDETGQAHFKKHAIG 296 Query: 278 ----ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 + K+ E + + + +++ G+ + +++ Sbjct: 297 SEHIAKEILKRLKFDNETIRTVARLVLYHDYRMPAEAKNVRRAMNKIGEDIFEYYMEVRR 356 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGN 383 A T+ + + I + K ++G D++ GI PGK++G Sbjct: 357 ADVLAQSTYLRERKLKNLDDIEILYAKIKEAKQCVSLKELAVSGSDLIAIGIKPGKEIGE 416 Query: 384 ILVHCKQEWINSSFQLSQEDLHH 406 IL + I +E L Sbjct: 417 ILNRLLEMVIEDPELNQKEILLK 439 >gi|227510319|ref|ZP_03940368.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189971|gb|EEI70038.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 405 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 103/397 (25%), Positives = 183/397 (46%), Gaps = 18/397 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + ++ VGG+VRD+++ + D+DIAT+ P V +F +T T Sbjct: 18 ALPILRKIEAAGYEAYFVGGSVRDTILQRPIHDVDIATSAYPSEVKGLFKRTA----DTG 73 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ +++TT R++ D R KV F R K D RRDFTINAL + Sbjct: 74 IEHGTVMILDHGTGYEVTTFRTESGYQDYRRPDKVTFVRSLKEDLKRRDFTINALALSEN 133 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ D GGLND+ + I+ +GD R ED LR++R RF + + I+ L Sbjct: 134 GKITDLFGGLNDMSKKIIRAVGDPEERFNEDALRMMRAVRFASQL-DFKIEEQTLTGIYD 192 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK ++ ERI SE K++ + N + M +++ + D E L L +++ Sbjct: 193 HSELLKKIAVERIHSEFVKMMLGVDAKNGLNLMIKSQLYQFV-PDFSEH-LTVLQKIVAT 250 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + ++ F + + ++ ++S K++ +I +I F K+ + Sbjct: 251 HFDLDNEVQVWALFTSMFQF-NRDQVISFLKRWKTANKIINDVILTTELIFQIKSQKVGN 309 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 ++ Y G + + + I +N T D+ +++ + K +TG D++K Sbjct: 310 LE--LYKAGKQNVKNAVTII-----SNYTDFDSAKLIKAYDQLPITTKKQLNVTGGDLIK 362 Query: 373 YGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 GI PG K+G L ++ + +L Sbjct: 363 RGILNPGPKLGETLGALEKAVVLGKINNQDSELIAAA 399 >gi|225375849|ref|ZP_03753070.1| hypothetical protein ROSEINA2194_01481 [Roseburia inulinivorans DSM 16841] gi|225212284|gb|EEG94638.1| hypothetical protein ROSEINA2194_01481 [Roseburia inulinivorans DSM 16841] Length = 446 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 97/438 (22%), Positives = 176/438 (40%), Gaps = 48/438 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ VGG VRD+++ D DI T+ P++V +F T I T I + Sbjct: 12 IIDTLTQHGFEAYAVGGCVRDTMLGRIPMDWDITTSAKPEQVKELFRHT----IDTGIQH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D D R+ +V FT + D RRDFTINA+ + + + Sbjct: 68 GTVTVMLEHEGFEVTTYRIDGEYEDARHPKEVQFTSNLLEDLKRRDFTINAMAYNDKDGL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ DL I+ +G A R ED LR+LR RF A G +I+ + A + Sbjct: 128 VDAFDGVGDLERGVIRCVGAAVERFTEDALRMLRAVRFGAQLG-FSIEDETREAIVSLAP 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S+ERI E+ KLL + +P + Y G+ + E+ + V Sbjct: 187 NIAKVSAERIQIEMVKLLTSGHPEL-LRTAYETGLTAVFLPEFDEMMKTPQNNPHHCYSV 245 Query: 256 FEW--------KIDSLLRFIVLISWQDKK----------------------SILSMAKKF 285 E + D + R +L+ K + ++ Sbjct: 246 GEHTLHALMEIQPDKVARITMLLHDVAKPMCRTTDEHGVDHFYGHPQEGSLVARKILRRL 305 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK--VMIAKLKIFLALHYNNLTHQ 343 + + C+ + L +++ Y G ++ +K L + + Sbjct: 306 KFDNDTTDRVCRLILCHDDNPPLQERTVRRAIYRNGVDQYPLLFAVKRADMLAQSAYRRE 365 Query: 344 DTCFILQVLSDI--------IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + L+ +I +TG D++ G+ PGK +G L + + Sbjct: 366 EKAEYLKEYEEIYEQIMAKRQCLSIKELAVTGTDLIADGMQPGKAIGETLKQLLEYVLEH 425 Query: 396 SFQLSQEDLHHLLRKLIA 413 ++E L + + + Sbjct: 426 PEDNTKEKLMEQVHNIAS 443 >gi|294675746|ref|YP_003576361.1| CCA-adding enzyme [Rhodobacter capsulatus SB 1003] gi|294474566|gb|ADE83954.1| CCA-adding enzyme [Rhodobacter capsulatus SB 1003] Length = 384 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 129/404 (31%), Positives = 193/404 (47%), Gaps = 29/404 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + +L++L+ G ++ +VGG VR++ + V DIDIAT P+RVM + Sbjct: 3 ITGDWLTAGHVQKVLAMLSDGGHQALLVGGCVRNAALFQPVSDIDIATDAPPERVMALAK 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GT+ ++ ++TT R D+ T GR+A V F+ D + D+ RRDFT+ Sbjct: 63 AAGLKPVPTGIEHGTVTVVADHVGHEVTTFRRDVETFGRHAIVAFSTDLREDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKN 181 NALYA G VID +G GL DL R ++F+GD RI EDYLRILRFFRF A YG ++ Sbjct: 123 NALYARADGTVIDPLGEGLADLSARRLRFVGDPAQRITEDYLRILRFFRFTAWYGDPDQG 182 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D++GL A G++ LS ERI E+ KLL A +P A+ M G+ ++ + Sbjct: 183 MDAEGLAACAAFSAGIETLSRERIGHEMRKLLSAPDPAPAVAAMAASGVLAQVLPGAEAR 242 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 L L + D L R L +D A + L + L Sbjct: 243 FLAPLVHLEG-----SVPADPLRRLACL-GGEDP------ADRLRLSKAEARRLERLREA 290 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + +L Y YG + L I A + + + Sbjct: 291 LGDPGSDA-----ELGYRYGAETGRDALLIRCASLGQEIPESSR-------NRVAFGAAQ 338 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+T D++ G +G L ++ WI S F LS+E L Sbjct: 339 RFPVTAADLMPKH--QGPALGAKLKELERRWIASGFSLSREALL 380 >gi|12724561|gb|AAK05657.1|AE006386_8 poly(A) polymerase [Lactococcus lactis subsp. lactis Il1403] Length = 411 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 106/405 (26%), Positives = 199/405 (49%), Gaps = 26/405 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L + + ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I Sbjct: 26 AKPVLEKIIEHGFEAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFPYT----IDVG 81 Query: 75 ISYGTIKIICRK---KYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I +GT+ ++ K ++++ITT R++ TD R V F RD + D RRDFTINA Sbjct: 82 IEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTINAFAC 141 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D G++ID GL DL+ R + +G A R ED LRI+R RF A + I++ +A Sbjct: 142 DVNGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFAATL-DFQIENKTFLA 200 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ++ L+ +S ERI+ E +KLL ++ N + + G +K + D+Q+ +L ++ Sbjct: 201 MCESAHLLEKISVERIFIEFDKLLLGQDWRNGLTLLLKSGAYKYL-PDLQDSALKKVLTD 259 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + F+ + + S D K+ L +K+ + E F+ + L Sbjct: 260 LSVDFHFQNSEQAWAALLTRFSNVDVKTFL---RKWKVSNEFAKFVADLVSAY----ELD 312 Query: 310 IPEIKKLFYLYGDKV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++ L++ +KV ++ +LK+ L N + + + + K + G Sbjct: 313 SWDLMSLYHFGLEKVLLVDELKVAYGLKIN------REQAVTINNQLQIHDKSEIVIAGK 366 Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 D++ ++ + PG ++G IL +++ + + + Q + ++K++ Sbjct: 367 DLMEEFSLEPGPELGKILKIIEEKIVKNELKNEQAAIFAEVKKML 411 >gi|307706183|ref|ZP_07643001.1| RNA nucleotidyltransferase [Streptococcus mitis SK321] gi|307618443|gb|EFN97592.1| RNA nucleotidyltransferase [Streptococcus mitis SK321] Length = 394 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 102/398 (25%), Positives = 183/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL+DL + ++ +G A R ED LRI+R FRF A G ++S+ A Sbjct: 124 GEIIDLFHGLDDLGKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELESETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ E Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDMAA-SQDKLNRLFEL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ D ++ K + R+ + ++ Sbjct: 241 ETDFTFE-SSEQAWAALLWALDIENAQPFLKAWKTSRQFAKQVQDLLTILALRE--KGEL 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A S IH KK + G + + Sbjct: 298 SKRDCYRFDLDLLLQAENLRQA---QGKPVNPQVITETYQSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392 >gi|28378528|ref|NP_785420.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum WCFS1] gi|308180685|ref|YP_003924813.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|73619787|sp|Q88W02|CCA_LACPL RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|28271364|emb|CAD64269.1| polynucleotide adenylyltransferase [Lactobacillus plantarum WCFS1] gi|308046176|gb|ADN98719.1| tRNA CCA-pyrophosphorylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 407 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 23/409 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ + ++ VGG VRD+++ + D+DIAT+ P V ++F +T + T Sbjct: 13 AKPIIETIEAAGYEAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFKRT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ ++ TT R++ D R +V F R K D RRDFTINAL Sbjct: 69 IEHGTVMILDHGNGYETTTFRTESGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTAN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL D+ ++ +G A R ED LR++R RF + G I+S A Sbjct: 129 GEVIDLFDGLADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLG-FTIESQTEQAIAD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L ++ ER E KLL ++P+ + + +++ + DQ + + + Sbjct: 188 NAALLAKIAVERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYM-----PAMADQEAMLRQL 242 Query: 253 EQVFEWKIDSLLRFIVLISW----QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + W + S+ L+SW D+ ++ + K + E+ + + K Sbjct: 243 MALPAWHLPSIESTWTLLSWTMQRTDEAAVRQLLKTWKTSNELINHVTAAIKALMALKHN 302 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++ FY G + + ++ L + QD ++Q + + K + G Sbjct: 303 GQLTAQENFYT-GLEALKTANQVATILGFG----QDQAQLVQSYASLPIHDKHELAINGG 357 Query: 369 DVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 D++K + PG +G IL C Q + Q+ L R ++A S+ Sbjct: 358 DLLKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405 >gi|325264322|ref|ZP_08131053.1| polyA polymerase [Clostridium sp. D5] gi|324030393|gb|EGB91677.1| polyA polymerase [Clostridium sp. D5] Length = 444 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 104/438 (23%), Positives = 195/438 (44%), Gaps = 48/438 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I I++ L ++ VGG VRDS++ +D DI T+ P+ + R+F +T + T Sbjct: 9 VIMIINNLQLHGYEAFAVGGCVRDSILCRKPEDWDITTSARPEEIKRLFRRT----VDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ F++TT R D L D R+ K V FT + D RRDFTINA+ + + Sbjct: 65 IEHGTLTVMIGREGFEVTTYRVDGLYEDSRHPKDVTFTTSLEEDLRRRDFTINAMAYNDE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D GG+ DL + I+ +GD R ED LRILR RF A I+ + A + Sbjct: 125 VRLVDVFGGMKDLNHHLIRCVGDPAERFSEDALRILRAVRFSAQLA-FPIEKNTAQAVRE 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK +S+ERI E+ KLL + +P + I Y GI K I + + + + Sbjct: 184 LAPTLKNISAERIQVELVKLLMSDHP-DLIQDAYELGITKIILPEWDAMVGVEQNTRHHK 242 Query: 253 EQVFEWKI--------DSLLRFIVLISWQDKKS----------------------ILSMA 282 V + D +LR +L K S S+ Sbjct: 243 YDVAGHTLHALKNVKKDKILRLTMLFHDMGKPSMKTTDEKGVDHFKGHALVSEEIARSVL 302 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 ++ + + + + + +++ G ++ L + +A + Sbjct: 303 RRLKFDNDTVKKVTRLVCYHDYRIEATPQNVRRAMNRIGVELFPYYLAVRMADVKAQSPY 362 Query: 343 QDTCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 + I +++ +++ L ++G D++K G+ PG+++G++L + Sbjct: 363 RRRAKIENIVAMRELYQETLINDHCVTLRQLAVSGRDLMKLGMQPGRQMGDMLNELLELV 422 Query: 393 INSSFQLSQEDLHHLLRK 410 ++ +E L + +++ Sbjct: 423 LDEPEMNEKEKLCNYVKE 440 >gi|321461613|gb|EFX72643.1| hypothetical protein DAPPUDRAFT_200873 [Daphnia pulex] Length = 418 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 117/414 (28%), Positives = 206/414 (49%), Gaps = 19/414 (4%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 K +L+ + + K + GG VRD LMN+ D+D ATT P ++ +F+ Sbjct: 7 DFKSIFTDELVQLQKIFEKHNYEIRFAGGPVRDLLMNIKPHDLDFATTATPQQMKDMFNS 66 Query: 66 TRYKVIP-TSISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I T +GTI + + + F+ITTLR D++ GR+A+V FT+DW+ D+ RRD T Sbjct: 67 ENIRMINLTGEKHGTITVRINEQENFEITTLRIDVVNHGRHAEVEFTQDWELDANRRDLT 126 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-- 181 +N+++ G V DY GG DL+ R + F+GDA R+ EDYLRILR+FRF A Sbjct: 127 VNSMFLGFDGTVYDYCGGWEDLQKRRVAFVGDARTRMQEDYLRILRYFRFCARISPDPNL 186 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + D A + +GL +S ERIW E+ ++L ++ + M GI I L ++ Sbjct: 187 HEPDTEAALRENMEGLSRISGERIWLELKQILSNRHAGPLLETMLRLGIAPYIGLG-EDP 245 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---REIRYFLISF 298 ++ + + E + ++ + L+ + + S+ + P +++ +F++ Sbjct: 246 NVKEFKVIWERAKNNNVELLPITLLSALLDSEGAAA--SLHARLKYPNFDKDLSFFIVEH 303 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 N +PE K Y V+ K K+ A+ + ++ ++ W Sbjct: 304 RNL--------LPEPFKPLRPYQMIVIDTKQKMKDAI-FRGAELLRYQGKQELANEFEKW 354 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 P FP+ G D+ G+P GK + ++ + +W ++ FQ+S EDL + +++ Sbjct: 355 VPPRFPVGGADLKDKGVPGGKPMSMVIQKLRSKWKDNDFQISHEDLVRSIPEVM 408 >gi|167759626|ref|ZP_02431753.1| hypothetical protein CLOSCI_01984 [Clostridium scindens ATCC 35704] gi|167662752|gb|EDS06882.1| hypothetical protein CLOSCI_01984 [Clostridium scindens ATCC 35704] Length = 447 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 104/434 (23%), Positives = 188/434 (43%), Gaps = 48/434 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L + ++ VGG +RDS++ +D DI T+ +P+ +F KT T I Sbjct: 19 RIIGTLQEHGYEAYAVGGCIRDSILGREPEDWDITTSAMPEETKALFDKT----FDTGIQ 74 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTI ++ K+ F++TT R D D R+ +V FTR+ + D LRRDFTINA+ ++ Sbjct: 75 HGTITVLLEKEGFEVTTYRIDGKYEDSRHPKEVTFTRNLREDLLRRDFTINAMAYNETDG 134 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GGL DL I+ +G A R ED LRILR RF A G +I+ D + Sbjct: 135 LVDIFGGLEDLEAGMIRCVGTAKERFKEDALRILRGVRFAAQLG-FDIEEDTRQGMKELA 193 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L+ +S+ERI E+ K++ +K P + Y G+ + + + ++ Sbjct: 194 WTLQNISAERIQVELVKMITSKRP-EMLREAYELGMTRIVLPEFDQLMTTGQETPHHMYS 252 Query: 255 VFEWKI--------DSLLRFIVLISWQDKKSI----------------------LSMAKK 284 V E + D +LR +L+ K ++ ++ ++ Sbjct: 253 VGEHTLHAMKNIRADKILRLAMLLHDMGKPALKTVDEAGVAHFKKHALESERIAENVLRR 312 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + C+ + + +++ G+++ +++ A +Q Sbjct: 313 LKFDNDTIRKVTRLVRCHDLRMPATAKSVRRAMNQIGEELFPYYMEVRRADVLAQSMYQR 372 Query: 345 TCFILQV--LSDIIHW--------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 I + + ++ H +TG D++ G+ PGKK+G L + I Sbjct: 373 EEKIENLDQIEELYHQIVEDGDCVSLKDLAVTGRDLIASGMKPGKKIGEKLEELLKLVIE 432 Query: 395 SSFQLSQEDLHHLL 408 ++E+L L Sbjct: 433 DPKLNTKEELLKRL 446 >gi|146297248|ref|YP_001181019.1| tRNA adenylyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410824|gb|ABP67828.1| tRNA adenylyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 394 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 105/397 (26%), Positives = 186/397 (46%), Gaps = 18/397 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + ++ LN+ K+ +VGG +RD L+ + QD DIAT P+ VM++F KT IP Sbjct: 6 DEPLQVIKRLNQHNFKAYLVGGCLRDYLLGTTPQDFDIATDAKPEDVMKLFEKT----IP 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T I +GT+ +I ++TT R + + R+ V FT D RRDFTINAL Sbjct: 62 TGIKHGTVTVIINNVKIEVTTFRIEKEYQNHRWPTVEFTDSLYEDLKRRDFTINALAYHP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +IDY GL+DL+N+ ++ +G+ H R ED LRILR RF +ID + Sbjct: 122 DEGLIDYFNGLDDLKNKIVRCVGNPHERFFEDALRILRCIRFATQLN-FSIDEKTFEGVV 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K LK +S ERI +E++K+L +KN L I +Y G+ + + + + S + Sbjct: 181 LLKDLLKKISKERINAELSKILRSKNSLYGIKLLYESGVGETVIPE----YIKIYSFLHS 236 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E + F D K + + + ++ +++ CN+ + Sbjct: 237 TEFDLILSEFKIPAFFACFR--DPKKVEDIMRDLRFDKK--NIILATKLCNYLNSEYATE 292 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + K Y +K+ + L + + + + K + GDD++ Sbjct: 293 YLVKKVYFEEEKMPEGIISTLSILKKDKTLME---LFSTLKAQNKLVSKKDVKIKGDDLL 349 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 K G+ GK++GN+L + +++ + +++++ + Sbjct: 350 KLGLK-GKELGNVLQIIYEYILHNPEKNNRDEILKHV 385 >gi|260431989|ref|ZP_05785960.1| poly A polymerase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415817|gb|EEX09076.1| poly A polymerase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 383 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 122/405 (30%), Positives = 186/405 (45%), Gaps = 26/405 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + N+ + L +G ++ VGG VR++L+ V D+DIAT P +VM + Sbjct: 3 ITEDWITNPATQNVCAALTEGGAQALFVGGCVRNALLGAPVSDLDIATDARPQQVMDLVE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K K +PT I +GT+ ++ +ITT R D+ TDGR A V F+ + D+ RRDFT+ Sbjct: 63 KAGLKAVPTGIDHGTVTVVSDGIPHEITTFRRDVETDGRRAVVAFSDQVEEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G ++D +GGL DLR R ++FIG A RI EDYLR LR+FRF A YG+ + Sbjct: 123 NALYARPDGTILDPLGGLPDLRARRVRFIGTARDRIREDYLRSLRYFRFHAWYGDAQAGM 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D D L A GL LS ER+ +E+ KLL A +P ++ M + G+ + + + Sbjct: 183 DPDALAAIAADLDGLDRLSRERVGAEMLKLLAAPDPAPSVAAMRSIGVLAHLLPGADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L I E D+L R + + +A L + L + Sbjct: 243 LPIL---IHLESHAGLAPDALRRLAAIAGPE-------VAGTLRLSKAQLTRLTRIRDGA 292 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + +L Y G + + + A T + + Sbjct: 293 QGGAGAA-----ELGYRLGQRDGLDAALLRCAFLEQPWTSETGAAVET-------GAAAT 340 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 FP+ D++ G +G L + WI S F L ++ L + Sbjct: 341 FPVKAADLLDRF--SGPALGAKLAEMESRWIASDFTLDRDALLQV 383 >gi|331003536|ref|ZP_08327033.1| hypothetical protein HMPREF0491_01895 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412377|gb|EGG91768.1| hypothetical protein HMPREF0491_01895 [Lachnospiraceae oral taxon 107 str. F0167] Length = 406 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 109/407 (26%), Positives = 184/407 (45%), Gaps = 22/407 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ I+ +L + + VGG VRDSL+ + D DI T LP + +IF KT Sbjct: 7 KNVEKIIEMLEESGFEGFAVGGCVRDSLLQKTPTDWDITTNALPSEMKKIFKKT----FD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I++GTI ++ +++TT R D +DGR+ V F+++ D RRDFTINA+ Sbjct: 63 TGIAHGTITVLMDSVGYELTTYRIDGNYSDGRHPDNVFFSKNLSEDLCRRDFTINAMAYS 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D G DL I+ +GDA R ED LR+LR RF A G I+ D VA Sbjct: 123 HKRGIVDLYSGREDLEKGIIRAVGDAKKRFDEDALRMLRAVRFSAQLG-FEIEKDTFVAI 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEISLDQLS 247 + L +S ERI+ E+NK L N I +Y+ G++K I F ++E + Sbjct: 182 TEKASLLSKVSKERIFVELNKTLSGDFAQN-IKFIYSSGLYKYIGKEFAGIKEEFYNFYP 240 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 + + ++ W + L + +D S+ + + + Sbjct: 241 RKLGNKKHMYWTV-------FLKNIEDINSVKKILSELKSDNATKINTDLLIKELRLPLP 293 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII----HWKKPLF 363 + +I+ + G ++ LKI N +D I I ++ + Sbjct: 294 KNDEDIRWSLHRLGCELFEDYLKICKTDKDNENNLKDIYEIEDGYKKIREKNHAFEISML 353 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +TG D++ GI G ++G IL + ++ I S ++ L L+++ Sbjct: 354 DITGRDLMDMGIQKGPEIGEILEYLLKKVIKSPELNNKNSLMALVKE 400 >gi|315613527|ref|ZP_07888434.1| polyA polymerase family protein [Streptococcus sanguinis ATCC 49296] gi|315314218|gb|EFU62263.1| polyA polymerase family protein [Streptococcus sanguinis ATCC 49296] Length = 399 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 103/398 (25%), Positives = 183/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G K ++S+ A Sbjct: 129 GEIIDLFQGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLGFK-LESETFEAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 188 LTSLLEKISVERTFVEFDKLLLAPFWRVGLSSMIESRAYAYL-PDM-AGSQDKLNKLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + K K + R+ + ++ + Sbjct: 246 EADFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILALREKGDL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + ++ + A S IH KK + G + + Sbjct: 303 SKRDCYRFDLDSLLQAESLRQA---QGKAVNPQAITETYQSLTIHDKKEIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 397 >gi|255282035|ref|ZP_05346590.1| poly A polymerase [Bryantella formatexigens DSM 14469] gi|255267354|gb|EET60559.1| poly A polymerase [Bryantella formatexigens DSM 14469] Length = 457 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 106/449 (23%), Positives = 192/449 (42%), Gaps = 62/449 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + +I+ L + ++ VGG VRDS++ D DI T+ P +V +F +T + Sbjct: 7 EQVKHIIGRLEEAGFEAYAVGGCVRDSIIGREPDDWDITTSAKPQQVKALFDRT----VD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ ++ K +++TT R D D R+ +V FT + D RRDFT+NA+ Sbjct: 63 TGIAHGTVTVMLDKTGYEVTTYRIDGEYADSRHPKEVSFTDNLTEDLRRRDFTVNAMAYS 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +ID GG+ DL+ I+ +G+A R ED LRILR RF A G +I+ + A+ Sbjct: 123 ESRGLIDVFGGIRDLQEGIIRCVGNAQERFSEDALRILRAVRFSAQLG-FSIEEETQAAA 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 LK +S+ERI E+ +LL + +P + Y GI + + + Sbjct: 182 RNMAGNLKNISAERIQGELVRLLVSPHP-EILGKAYELGITAVVLPEFDAMMQTPQHHKH 240 Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKS---------------------ILSM 281 V E + D ++R VL K + M Sbjct: 241 HIYNVGEHTLKALEYSEPDRIIRLAVLCHDFGKPASRTTKDGVDHFYGHPAISEELAGRM 300 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTL---------------SIPEIKKLFYLYGDKVMI 326 ++ + + + + + L S +++L Y G ++ Sbjct: 301 LRRLKFDNDTIRKVKALVRLHDAKPPLNDGTAEKLRSGGRAVSERSVRRLVYRCGKELFP 360 Query: 327 AKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKKPL----FPLTGDDVVKYGIP 376 A +++ A ++ T +L + +I+ ++ L ++G D++ GI Sbjct: 361 ALMQVCGADVLAQSDYRKTEKLLLLEQMYDIYEEILQKEECLSLKELAVSGRDLIGAGIA 420 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLH 405 PGK++G IL ++ ++ ++E L Sbjct: 421 PGKEIGEILERMLEDVLDEPQHNTREYLM 449 >gi|30024049|ref|NP_267715.2| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. lactis Il1403] gi|73619785|sp|Q9CFC2|CCA_LACLA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|326407027|gb|ADZ64098.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 398 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 106/405 (26%), Positives = 199/405 (49%), Gaps = 26/405 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L + + ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I Sbjct: 13 AKPVLEKIIEHGFEAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFPYT----IDVG 68 Query: 75 ISYGTIKIICRK---KYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I +GT+ ++ K ++++ITT R++ TD R V F RD + D RRDFTINA Sbjct: 69 IEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTINAFAC 128 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D G++ID GL DL+ R + +G A R ED LRI+R RF A + I++ +A Sbjct: 129 DVNGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFAATL-DFQIENKTFLA 187 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ++ L+ +S ERI+ E +KLL ++ N + + G +K + D+Q+ +L ++ Sbjct: 188 MCESAHLLEKISVERIFIEFDKLLLGQDWRNGLTLLLKSGAYKYL-PDLQDSALKKVLTD 246 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + F+ + + S D K+ L +K+ + E F+ + L Sbjct: 247 LSVDFHFQNSEQAWAALLTRFSNVDVKTFL---RKWKVSNEFAKFVADLVSAY----ELD 299 Query: 310 IPEIKKLFYLYGDKV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++ L++ +KV ++ +LK+ L N + + + + K + G Sbjct: 300 SWDLMSLYHFGLEKVLLVDELKVAYGLKIN------REQAVTINNQLQIHDKSEIVIAGK 353 Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 D++ ++ + PG ++G IL +++ + + + Q + ++K++ Sbjct: 354 DLMEEFSLEPGPELGKILKIIEEKIVKNELKNEQAAIFAEVKKML 398 >gi|170055265|ref|XP_001863506.1| CCA-adding enzyme [Culex quinquefasciatus] gi|167875250|gb|EDS38633.1| CCA-adding enzyme [Culex quinquefasciatus] Length = 430 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 123/416 (29%), Positives = 207/416 (49%), Gaps = 15/416 (3%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 V + + +L +++ L + + + + GGAVRD LM L +DIDIATT P + Sbjct: 16 VDTPEFRSIFTKELEDLIELFRRYDHEIRVAGGAVRDILMGLCPKDIDIATTATPTEMKE 75 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 IF+K +++ +GTI ++ F+ITTLR D +TDGR+A+V+ T+DW D+ R Sbjct: 76 IFTKENIRMVNMNGEKHGTITPRINDRENFEITTLRIDAVTDGRHAEVIHTKDWLLDANR 135 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G V DY G +DL+ R + F+GD RI EDYLRILR+FRF+ E Sbjct: 136 RDLTINSMFLGFDGSVYDYFYGYDDLQKRRVAFVGDPDLRIKEDYLRILRYFRFYGRIAE 195 Query: 180 K--NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + N D + L K GL +S ERIW E K++ + V M N + I L Sbjct: 196 RIDNHDKETLRIIAKNASGLAKISGERIWQEWKKIMAGNFGCDLTVKMINSDLSASIGLP 255 Query: 238 VQEISLDQLSQVIEA-EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 ++ ++++ +V + E V I + L+ + L++ KF++ + + Sbjct: 256 -EKPNVEEFVRVFKNIESVQGGDIQPITPLSALLHTPEDAITLNLRLKFTVFERELAYFL 314 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + F +P + + G + K + L Y+ + + + Sbjct: 315 TQNRDEFESVNELLPFQQLSLHTLGS-AKLKKEYVLELLRYHGKRE--------LYAQLK 365 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 W+ P FP+ G+ ++++G P G K+G ++ K W + F +S+ DL L ++ Sbjct: 366 EWQIPAFPIKGNVLIEHGAPKGPKLGLVMNELKMVWAANQFDMSEPDLLGHLPAVL 421 >gi|116333429|ref|YP_794956.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus brevis ATCC 367] gi|122269884|sp|Q03S97|CCA_LACBA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116098776|gb|ABJ63925.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus brevis ATCC 367] Length = 397 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 96/398 (24%), Positives = 174/398 (43%), Gaps = 19/398 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L + + ++ VGG+VRD+++ + D+DIAT+ PD + +F +T + T Sbjct: 13 ARPVLQTIEQAGYEAYFVGGSVRDTILGKEIHDVDIATSAYPDEIKHLFKRT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ ++ TT RS+ TD R +V F R D RRDFTINAL + Sbjct: 69 IEHGTVMILDHGTGYETTTFRSESTYTDFRRPDQVTFVRSLAEDLKRRDFTINALAMKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G VID GL DL++R I+ +GD R ED LR++R RF + I + L A Sbjct: 129 GTVIDLFDGLADLKHRQIRAVGDPQERFHEDALRMMRAVRFASQLN-FTIVPETLAAMTS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L+ ++ ER E+ KLL + P + + G+++ D + +D + Sbjct: 188 HAELLRKIAVERTQVELLKLLTGQAPQQGLTDLLTTGLWQYC-PDFADHKVDLERLTAQL 246 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF--LISFFNCNFNQKTLSI 310 Q + + + +I + K + + + + + Q +LS Sbjct: 247 HQGASTDLTAWTLLTTSF-GLETNAITTFLKHWKTANQTISAVQMTTKMAQHLLQGSLST 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++ Y G+ +L I + ++ ++ K +TG D+ Sbjct: 306 WQV----YQCGE----DQLMIANEAAVVLGATDRSRELVAQWQNLPIQTKKALAVTGRDL 357 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ G+ PG ++G IL + + + + L + Sbjct: 358 MQAGVQPGPQLGAILGDLEYQVVTGKLPNEKPALVAAV 395 >gi|281492122|ref|YP_003354102.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281375805|gb|ADA65302.1| tRNA nucleotidyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 398 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 105/405 (25%), Positives = 200/405 (49%), Gaps = 26/405 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L + + ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I Sbjct: 13 AKPVLEKIIEHGFEAYFVGGSVRDILLGREIHDVDIATSAYPEEIKDIFPYT----IDVG 68 Query: 75 ISYGTIKIICRK---KYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I +GT+ ++ K ++++ITT R++ TD R V F RD + D RRDFT+NA Sbjct: 69 IEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFAC 128 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D G++ID GL DL+ R + +G A R ED LRI+R RF A + I++ +A Sbjct: 129 DVNGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFAATL-DFQIENKTFLA 187 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ++ L+ +S ERI+ E +KLL ++ N + + G +K + D+Q+ +L+++ Sbjct: 188 MCESAHLLEKISVERIFIEFDKLLLGQDWRNGLTLLLKSGAYKYL-PDLQDSALEKVLTD 246 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + F+ + + S D K+ L +K+ + E F+ + L Sbjct: 247 LSVDFHFQNSEQAWAALLTRFSNIDVKTFL---RKWKVSNEFAKFVADLVSAY----ELD 299 Query: 310 IPEIKKLFYLYGDKV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++ L++ +KV ++ +LK+ L N + + + + K + G Sbjct: 300 SWDLMSLYHFGLEKVLLVDELKVAYGLKIN------REQAVTINNQLQIHDKSEIVIAGK 353 Query: 369 DVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 D++ ++ + PG ++G IL +++ + + + Q + ++K++ Sbjct: 354 DLMEEFSLEPGPELGKILKIIEEKIVKNELKNEQAAIFAEVKKML 398 >gi|220929703|ref|YP_002506612.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium cellulolyticum H10] gi|220000031|gb|ACL76632.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium cellulolyticum H10] Length = 448 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 109/449 (24%), Positives = 185/449 (41%), Gaps = 49/449 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K+ + ++ LN+ + +VGG VRDS++ + D DI T LP + IF Sbjct: 3 LCEKFEFPENAGYVIKKLNEAGYDAYLVGGCVRDSILCKAPYDWDITTNALPIDIKSIFD 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDF 122 +T T I +GT+ ++ + ++TT R D D R KV FT + D RRDF Sbjct: 63 RT----YDTGIKHGTVTVLIGEMCLEVTTYRIDGDYKDFRRPDKVEFTSSLREDLARRDF 118 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TINA+ + ++D+ GGL DL+ R IK +GD R ED LR++R RF A G I Sbjct: 119 TINAMAYHPEQGLVDFFGGLQDLKKRIIKAVGDPEQRFREDALRMMRAIRFSAQLG-FEI 177 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + A + +SSERI E+NK L ++NP + +++ GI I + + Sbjct: 178 EEATFEAIKSNSALIANISSERIRDELNKTLVSENPEH-FNYLHQTGILPYILPEFERCY 236 Query: 243 LDQLSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKS----------------- 277 + V + + D +LR+ VL+ K Sbjct: 237 KTEQINPYHVYNVADHTMYAVKSIENDHILRWTVLLHDVGKPPRKTTDSKGIDHFYGHQA 296 Query: 278 -----ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332 + + +E ++ + + I+K GD++ LK+ Sbjct: 297 VSSQIAEKVLNRLRFDKESIKKIVLLVKYHDMDIEDTPKSIRKAVNKIGDELFPLLLKVQ 356 Query: 333 LALHYN------NLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVK-YGIPPGKKV 381 A I ++ SDI ++ L + GDD+++ G+ PG ++ Sbjct: 357 KADKMAQNPKFLAERIVKWNRIEKIYSDIKSEQQCLSKKDMAVNGDDLIQLLGMKPGIQI 416 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +L + + ++ L L +K Sbjct: 417 REMLDYLCDCVLECPELNEKQKLLELAKK 445 >gi|188588229|ref|YP_001920923.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum E3 str. Alaska E43] gi|188498510|gb|ACD51646.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 432 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 107/427 (25%), Positives = 195/427 (45%), Gaps = 38/427 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D+ IL L ++ IVGG VRDS++N +D DI T P+ V+++F+ KVI T Sbjct: 10 DVRFILETLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVVKLFN----KVILT 65 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 + +GT+ ++ + +++TT R D D R+ K V F + K D RRDFTINA+ ++ Sbjct: 66 GVKHGTVTVLINSEGYEVTTYRMDGKYEDSRHPKQVNFVSNLKEDLARRDFTINAMAYNK 125 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY G++DL+ + IK +G++ R ED LR+LR RF + + +I ++ L + Sbjct: 126 EDGLIDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQL-DFSISNETLNSIK 184 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------- 238 + +K +S ERI E NK+L + I + G+ + IF ++ Sbjct: 185 NLRYNIKNISKERIREEFNKILLSS--TKGIDILIETGLIEHIFPEIIKFCDFKVDNMYY 242 Query: 239 -QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----SILSMAKKFSLPREIRY 293 + + + E E K+ ++ I+ +D + + K+F Sbjct: 243 NDNLYAHTVRAIEEIESALHLKLTMFFYNLIRINNEDIEYTILQVKEFLKEFQYDNNTVN 302 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 + + N + EIK++ L + LK+ A + + +LS Sbjct: 303 KVTTLI-LYMNNDLNTKLEIKQILNLINLDLFEDLLKVKEAEILSQNPLYKEKRLSHLLS 361 Query: 354 DIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 + K+ L + G D++ G+ GK +G +L + +N+ +E Sbjct: 362 IRENLKEILLNKECFNLKDLSINGKDLINLGLEKGKNIGEMLNELLELVMNNPDLNDKEI 421 Query: 404 LHHLLRK 410 L ++++ Sbjct: 422 LIDIVKE 428 >gi|317471034|ref|ZP_07930409.1| poly A polymerase head domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901475|gb|EFV23414.1| poly A polymerase head domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 449 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 113/443 (25%), Positives = 195/443 (44%), Gaps = 51/443 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I++ L + ++ +VGG VRD ++ D DI T+ P +V IFS T I Sbjct: 8 EKAKQIINQLEQAGYEAYVVGGPVRDCILGKCPTDWDITTSASPYQVKEIFSYT----ID 63 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ ++ K+ F++TT R D D R + V FT+ K D LRRDFTINA+ + Sbjct: 64 TGIAHGTVTVMMGKEPFEVTTYRVDGEYRDHRRPEEVCFTKSLKEDLLRRDFTINAMAYN 123 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +IDY GG DL+ +TI+ +GDA R ED LRILR RF A G I+ + A Sbjct: 124 DRDGLIDYYGGAEDLKKKTIRCVGDARRRFDEDALRILRALRFQAQLG-FVIEEETKQAI 182 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-- 248 K K LK +S+ERI +E+ KLL + +P + ++ G+ K + + + + Sbjct: 183 QKQAKFLKDISAERIQTELTKLLLSDHPETILDA-FDLGVTKVVLPEFDRMMETPQNNPH 241 Query: 249 ------VIEAEQVFEWKIDSLLRFIVLISWQDKKSI---------------------LSM 281 V E + + D +LR+ +L+ K + Sbjct: 242 HCYNVGVHTVEALKNTEPDHILRWTMLLHDVGKPEARVEGKIKDSFQGHNTIGEEVSRKI 301 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 K+ + + + + KK + ++ + + L + +++ Sbjct: 302 LKRLKFDNQTIKQVTRLVYWHDVRFGSLDEVSKKTVRRWVSRISVPLFEKLLKVQQADIS 361 Query: 342 HQDT---------CFILQVLSDIIHWKKPLFPLT-----GDDVVKYGIPPGKKVGNILVH 387 Q T ++L + I +K + G D++ G+ PG+++G +L Sbjct: 362 AQSTFMQEEKQQILDRTRLLFEEIKEEKDCLQVKDLALDGKDLISLGMKPGREIGEMLAG 421 Query: 388 CKQEWINSSFQLSQEDLHHLLRK 410 + + + +E L +RK Sbjct: 422 LLELVLEDPAKNKREVLEQAVRK 444 >gi|251777768|ref|ZP_04820688.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082083|gb|EES47973.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 432 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 108/427 (25%), Positives = 196/427 (45%), Gaps = 38/427 (8%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D+ IL L ++ IVGG VRDS++N +D DI T P+ V+++F+ KVI T Sbjct: 10 DVRFILETLKNNGHEAYIVGGCVRDSILNNIPKDWDITTKARPEEVVKLFN----KVILT 65 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 + +GT+ ++ + +++TT R D D R+ K V F + K D RRDFTINA+ ++ Sbjct: 66 GVKHGTVTVLINSEGYEVTTYRMDGKYEDSRHPKQVKFVSNLKEDLARRDFTINAMAYNK 125 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY G++DL+ + IK +G++ R ED LR+LR RF + + +I ++ L + Sbjct: 126 EDGLIDYFEGVSDLKKKVIKTVGNSEKRFSEDALRMLRAIRFSSQL-DFSISNETLNSIK 184 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------- 238 + +K +S ERI E NK+L + I + G+ + IF ++ Sbjct: 185 NLRYNIKNISKERIREEFNKILFSS--TKGIDILIETGLIEHIFPEIIKFCDFKADNMYY 242 Query: 239 -QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK----SILSMAKKFSLPREIRY 293 + + + E E K+ L ++ I+ +D + + K+F Sbjct: 243 NDNLYAHTVRAIEEIESSLHLKLTMLFYNLIKINNEDIEYTILQVKEFLKEFKYDNNTVN 302 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 + + N + EIK++ L + LK+ A + + +LS Sbjct: 303 KVTTLI-LYMNNDLNTKLEIKQILNLINLDLFEDLLKVKEAEILSQNPLYKEERLSHLLS 361 Query: 354 DIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 + K+ L + G D++ G+ GK +G +L + +N+ +E Sbjct: 362 IRENLKEILLNKECFNLKDLSINGKDLINLGLEKGKNIGEMLNELLELVMNNPDLNDKEI 421 Query: 404 LHHLLRK 410 L ++++ Sbjct: 422 LIDIVKE 428 >gi|225861389|ref|YP_002742898.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230539|ref|ZP_06964220.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255205|ref|ZP_06978791.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|225726386|gb|ACO22237.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae Taiwan19F-14] gi|327389745|gb|EGE88090.1| CCA-adding enzyme [Streptococcus pneumoniae GA04375] Length = 394 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 186/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S+ K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSLLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|194397214|ref|YP_002038188.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae G54] gi|226702089|sp|B5E6J9|CCA_STRP4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|194356881|gb|ACF55329.1| poly(A) polymerase family protein [Streptococcus pneumoniae G54] Length = 399 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHNPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 188 LTPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 303 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKEIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|168486818|ref|ZP_02711326.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC1087-00] gi|225857182|ref|YP_002738693.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae P1031] gi|183570208|gb|EDT90736.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC1087-00] gi|225726321|gb|ACO22173.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae P1031] Length = 394 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|296876424|ref|ZP_06900476.1| tRNA adenylyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296432714|gb|EFH18509.1| tRNA adenylyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 403 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 95/406 (23%), Positives = 189/406 (46%), Gaps = 17/406 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF +T + Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFDRT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 68 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G+++D GL DL N+ ++ +G H R ED LRI+R FRF A G ++ A Sbjct: 128 KGEIVDLFHGLEDLENKVLRAVGLPHERFNEDALRIMRGFRFQASLG-FELEEATSDAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L+ +S ER + E +KLL + + M + G + + ++++ + + ++ + Sbjct: 187 ECAPLLEKISVERTFIEFDKLLLSPYWRQGVEAMLSSGAYHYL-PEMKDRK-EAIERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E + + S + L+ + + I KK+ RE + ++ S+ Sbjct: 245 IELEYTFST-SEQAWAALVLALEIQDIPKFFKKWKTSREFAKTVEQIVEILKLREKGSLD 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y ++++ ++ + D I +V + K + G ++ Sbjct: 304 --KRACYKYEKRLLLLAEELREGYALSV----DYLVIERVYDSLTIHDKHEVVVNGGMLI 357 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 K YG PG +G IL + ++ +E + +++ + Sbjct: 358 KEYGFQPGPALGEILTKIEYAIVDGELANEKEAIIAYIQQAKEEEK 403 >gi|153815226|ref|ZP_01967894.1| hypothetical protein RUMTOR_01460 [Ruminococcus torques ATCC 27756] gi|317502317|ref|ZP_07960486.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089921|ref|ZP_08338813.1| hypothetical protein HMPREF1025_02396 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847485|gb|EDK24403.1| hypothetical protein RUMTOR_01460 [Ruminococcus torques ATCC 27756] gi|316896273|gb|EFV18375.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403153|gb|EGG82714.1| hypothetical protein HMPREF1025_02396 [Lachnospiraceae bacterium 3_1_46FAA] Length = 449 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 96/440 (21%), Positives = 192/440 (43%), Gaps = 48/440 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L ++ VGG VRDS++ +D DI T+ P+ V ++F +T + T I + Sbjct: 12 IIKNLQLHGYEAYAVGGCVRDSILARRPKDWDITTSARPEEVKKLFRRT----VDTGIEH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT R D D R+ +V+FT + D RRDFTINA+ + + ++ Sbjct: 68 GTVTVLLGRDGYEVTTYRIDGAYEDSRHPKEVLFTNRLEEDLRRRDFTINAMAYNDEVRL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG+ DL + I+ +GD R ED LRILR RF A I+ + A + Sbjct: 128 VDVFGGMQDLNHHLIRCVGDPRERFSEDALRILRAVRFSAQLN-FPIEEETAEAVRELAP 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L+ +S+ERI +E+ KLL + +P I Y GI + I + ++ + + V Sbjct: 187 TLENISAERIQAELVKLLVSAHPER-IQDAYELGITRIILPEWDAMAGVEQNTPHHKYDV 245 Query: 256 FEWKI--------DSLLRFIVLISWQDKKS----------------------ILSMAKKF 285 + + D +LR +L K + + ++ Sbjct: 246 AQHTLHALKYVKRDKILRLTMLFHDMGKPARKTTDENGRDHFKGHALVSEAIARDVMQRL 305 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 + + + + + +++ G + L + +A +++ Sbjct: 306 KFDNDTIKKVTRLVCFHDYRTEATPANVRRAMNRIGVDLFPYYLAVRMADAKAQSSYRRR 365 Query: 346 CFILQVLSDIIHWKK----------PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 I +++ +++ ++G D++ G+ PG ++G +L + I++ Sbjct: 366 EKIENIVAMRKFYQEAIIKDECVTLRQLAVSGRDLMNLGMRPGVEIGRMLSELLEYVIDN 425 Query: 396 SFQLSQEDLHHLLRKLIASS 415 + ++ L + ++K I+ Sbjct: 426 PEKNDKKILCNYVKKKISQR 445 >gi|300767473|ref|ZP_07077385.1| tRNA adenylyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495292|gb|EFK30448.1| tRNA adenylyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 407 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 23/409 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ + ++ VGG VRD+++ + D+DIAT+ P V ++F +T + T Sbjct: 13 AKPIIETIEAAGYEAYFVGGCVRDTILGKPLHDVDIATSAFPAEVKQLFKRT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ ++ TT R++ D R +V F R K D RRDFTINAL Sbjct: 69 IEHGTVMILDHGNGYETTTFRTESGYQDFRRPDQVTFVRSLKEDLKRRDFTINALAMTAN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL D+ ++ +G A R ED LR++R RF + G I+S A Sbjct: 129 GEVIDLFDGLADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLG-FTIESQTEQAIAD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L ++ ER E KLL ++P+ + + +++ + DQ + + + Sbjct: 188 NAALLAKIAVERTRVEWEKLLMGQHPVAGLTGLLTTDLYRYM-----PAMADQEAMLRQL 242 Query: 253 EQVFEWKIDSLLRFIVLISW----QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + W + S+ L+SW D+ ++ + K + E+ + + K Sbjct: 243 MALPAWHLPSIESTWTLLSWTMQRTDEAAVRQLLKTWKTSNELINHVTAAIKALMALKHN 302 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++ FY G + + ++ L + Q ++Q + + K + G Sbjct: 303 GQLTAQENFYT-GLEALKTANQVATILGFG----QGQAQLVQSYASLPIHDKHELAINGG 357 Query: 369 DVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 D++K + PG +G IL C Q + Q+ L R ++A S+ Sbjct: 358 DLLKAKLVTPGPMMGQILAACLQAVVMKQVPNQQDALLDFAR-MVADSK 405 >gi|312110476|ref|YP_003988792.1| polynucleotide adenylyltransferase region [Geobacillus sp. Y4.1MC1] gi|311215577|gb|ADP74181.1| Polynucleotide adenylyltransferase region [Geobacillus sp. Y4.1MC1] Length = 404 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 112/399 (28%), Positives = 183/399 (45%), Gaps = 18/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L K ++ VGGAVRD L+ ++ D+DIAT+ LP VM++F KT I Sbjct: 8 ALGIIRQLKKHGYEAYFVGGAVRDLLLKRNIGDVDIATSALPHEVMQLFPKT----IDIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 +GT+ +I +++TT R+D D R + V F R D RRDFT+NA+ D+ Sbjct: 64 SQHGTVVVIHDGIPYEVTTFRADGNYEDHRRPESVTFVRSLYEDLKRRDFTMNAIAMDEA 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID GG + + NR I +GD R ED LR++R RF + G ++D + A I+ Sbjct: 124 GKLIDPFGGQDAITNRMICTVGDPKERFSEDALRMMRAIRFVSQLG-FSLDEETKQAIIE 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S ER+ E KLLE A+ + +F + L + ++ Sbjct: 183 NAPLLAHISVERMTMEFEKLLEGPFASRALSLLVETRLFFYL------PMLCEKENELQT 236 Query: 253 EQVFEW-KIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++W K+DS R+ L S + + + LP I + + + S Sbjct: 237 AACYDWRKLDSRGQRWGFLCHILRVDSPVRFLRAWKLPNRIIKEVETVLRIVQTTHSDSD 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 K+ + +G + IA + + N+ + +S I K + G D+ Sbjct: 297 WT-KERLFAFGLEHAIAAETVRSVANGENVDERRKKLRELFMSLPIK-TKSELAVRGHDI 354 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K +G P G V IL ++ I+ + +E +H L Sbjct: 355 MKWFGKPGGPWVKEILELIERAVIHGEVENHKERIHEWL 393 >gi|298503294|ref|YP_003725234.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TCH8431/19A] gi|298238889|gb|ADI70020.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TCH8431/19A] Length = 399 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 186/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S+ K + R+ + ++ + Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSLLKSWKTSRQFAKQVQDLLIILALRENGEL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 303 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKEIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|307708357|ref|ZP_07644824.1| CCA-adding enzyme [Streptococcus mitis NCTC 12261] gi|307615803|gb|EFN95009.1| CCA-adding enzyme [Streptococcus mitis NCTC 12261] Length = 394 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 180/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDDT 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G A R ED LRI+R FRF A G ++++ A Sbjct: 124 GEIIDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELETETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSKDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ K + R+ + ++ Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQPFLKAWKTSRQFAKQVQDLLTILALRE--KGEL 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + ++ + A S IH KK + G + + Sbjct: 298 SKRDCYRFDLDFLLQAENLRQA---QGKPVNPQVITETYQSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 392 >gi|163737967|ref|ZP_02145383.1| Polynucleotide adenylyltransferase region [Phaeobacter gallaeciensis BS107] gi|161388583|gb|EDQ12936.1| Polynucleotide adenylyltransferase region [Phaeobacter gallaeciensis BS107] Length = 384 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 129/409 (31%), Positives = 195/409 (47%), Gaps = 28/409 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ V+ KW D + ++ +L KG + VGG VR++L+ + V D+D++T + P RVM Sbjct: 1 MTRVKAKWLEDPAVQHVCEVLTKGGAEVYFVGGCVRNALLGVPVSDLDLSTNVAPQRVMA 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + K IPT I +GT+ ++ R ++ITT R D+ TDGR A V F + D+ RRD Sbjct: 61 LAEEAGIKAIPTGIDHGTVTLVYRGTPYEITTFRRDVATDGRRAVVAFADRIEEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--E 179 FT+NALYA G ++D + GL DL R ++FIG A RI EDYLR LR+FRF A YG + Sbjct: 121 FTMNALYARPDGVLVDPLNGLPDLHARAVRFIGSAAQRIREDYLRSLRYFRFHAWYGNSD 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D D L A + G+ LS ER+ SE+ KLL A +P AI M G+ I Sbjct: 181 AGFDPDALSAIAENLDGIGRLSRERVGSEVLKLLAAPDPAPAIAVMRQVGLLSLILPGSD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + +L L + + D L R L + A + S + L+ Sbjct: 241 DRALGPLIHLEG-----DISADPLCRLAALGGDAPWE-----ALRLSKSQAADVRLLRAG 290 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + L Y +G + + AL + V ++I Sbjct: 291 AEGTDGPAT-------LAYHHGVSTARNVMLLRSALFEAPIAP-------DVETEITKGA 336 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +FPL+ D++ G +G L +++WI S F L ++ L L Sbjct: 337 AAVFPLSAKDLMPD--LQGPALGAALKTLQKDWIRSGFMLDRDALLKRL 383 >gi|302871533|ref|YP_003840169.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor obsidiansis OB47] gi|302574392|gb|ADL42183.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor obsidiansis OB47] Length = 394 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 109/404 (26%), Positives = 199/404 (49%), Gaps = 18/404 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ +LN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F KT IPT Sbjct: 7 EPMKVIRILNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDAKPEDVIHLFEKT----IPT 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 63 GIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHPD 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF ID++ A Sbjct: 123 EGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQL-SFVIDNETFEALKS 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S ERI E++K LE+KN + +Y + I + +I L + + Sbjct: 182 LKDLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSVIIPEFLQIYL----YLSQV 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F + F + +D I + + R R ++ CN+ ++ + E Sbjct: 238 EFDFIPTKFKVPAFFACL--KDNTLIEKLMRDLKFDR--RNISLAIKLCNYLKRHYNTEE 293 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + K + + ++ + + +++ N+ +T IL+ + +I K + G+D++K Sbjct: 294 LIKRIF-FEEEENVEDIIFTMSILKNDTKITETFDILKKQNRLIRKKDVK--INGNDLLK 350 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ GK++G L + + + + +++++ + + + + Sbjct: 351 LGLK-GKEIGKTLNLIYEYILKNPEKNNKDEILNYVNFYLQEGK 393 >gi|303260182|ref|ZP_07346154.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP-BS293] gi|303262572|ref|ZP_07348513.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP14-BS292] gi|303264974|ref|ZP_07350889.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS397] gi|303266437|ref|ZP_07352325.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS457] gi|303269019|ref|ZP_07354801.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS458] gi|301802274|emb|CBW35026.1| CCA-adding enzyme [Streptococcus pneumoniae INV200] gi|302636289|gb|EFL66783.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP14-BS292] gi|302638679|gb|EFL69142.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae SP-BS293] gi|302641409|gb|EFL71774.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS458] gi|302644015|gb|EFL74274.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS457] gi|302645493|gb|EFL75725.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS397] Length = 394 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKDIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|156552292|ref|XP_001600496.1| PREDICTED: similar to ENSANGP00000010598 [Nasonia vitripennis] Length = 575 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 122/417 (29%), Positives = 202/417 (48%), Gaps = 18/417 (4%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K +L + + + + + GGAVRD LM +D+D ATT P + +F+ Sbjct: 13 PEFKSIFTPELNTLSDIFKRHNYELRVAGGAVRDILMGKHPKDLDFATTATPVEMKEMFT 72 Query: 65 KTRYKVIP-TSISYGTIK-IICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 K ++I +GTI I K+ F++TTLR D++TDGR+A VVFT DW D+ RRD Sbjct: 73 KEEVRMINCNGEKHGTITSRINDKENFEVTTLRVDVVTDGRHADVVFTTDWLLDASRRDL 132 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-- 180 TIN+++ D GKV DY G +DL R + F+G+ RI ED+LRI R+FRF+ + Sbjct: 133 TINSMFLDLDGKVYDYFYGYDDLMKRRVAFVGEPAQRICEDFLRIFRYFRFYGRIADVPD 192 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 N D + A + KGL+I+S ERIWSE +K+L + + G K + L + Sbjct: 193 NHDEKTITAIKENVKGLEIISGERIWSEWSKILAGNFHRELTLKLIECGCSKYMGLP-EN 251 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF-SLPREIRYFLISFF 299 ++L+ +++ Q K+ + L+ +++ L M +F + R + F++ Sbjct: 252 LNLEHFNKICLNAQKNNVKLRPISLIAALLHTEEEVLQLFMRLRFPNFDRNLALFIVQHR 311 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + L P + + G KV + + L Y L +L + W Sbjct: 312 EEKLCENPLK-PYQRVVLKTIG-KVSDVREFVSELLRYKGS--------LDLLEEFEKWD 361 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 FP+ G V Y + K +G ++ K W++S+ ++ E L + + A + Sbjct: 362 -SRFPINGGMVKPY-VENPKVIGEVINRLKDIWLDSNCEMPVEKLQKHIPDIAAEAS 416 >gi|15901397|ref|NP_346001.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae TIGR4] gi|116517000|ref|YP_816846.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae D39] gi|149007531|ref|ZP_01831166.1| polyA polymerase family protein [Streptococcus pneumoniae SP18-BS74] gi|149007893|ref|ZP_01831480.1| polyA polymerase family protein [Streptococcus pneumoniae SP18-BS74] gi|149021832|ref|ZP_01835839.1| predicted S-transferase [Streptococcus pneumoniae SP23-BS72] gi|14973044|gb|AAK75641.1| polyA polymerase family protein [Streptococcus pneumoniae TIGR4] gi|116077576|gb|ABJ55296.1| polyA polymerase family protein [Streptococcus pneumoniae D39] gi|147760620|gb|EDK67594.1| polyA polymerase family protein [Streptococcus pneumoniae SP18-BS74] gi|147760890|gb|EDK67860.1| polyA polymerase family protein [Streptococcus pneumoniae SP18-BS74] gi|147930068|gb|EDK81055.1| predicted S-transferase [Streptococcus pneumoniae SP23-BS72] gi|332074311|gb|EGI84788.1| CCA-adding enzyme [Streptococcus pneumoniae GA17545] Length = 394 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|307703289|ref|ZP_07640234.1| RNA nucleotidyltransferase [Streptococcus oralis ATCC 35037] gi|307623155|gb|EFO02147.1| RNA nucleotidyltransferase [Streptococcus oralis ATCC 35037] Length = 394 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 101/398 (25%), Positives = 181/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEQETFEAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S ++L ++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRVGLSSMIESQAYDYL-PDMAA-SREKLQKLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + K K + R+ + ++ + Sbjct: 241 EADFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILALREEGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + ++ + A S IH KK + G + + Sbjct: 298 SKRDCYRFDLDSLLQAESLRQA---QGKEVNPQAIKETYHSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENDRQAIHTYLRE 392 >gi|293365842|ref|ZP_06612547.1| tRNA adenylyltransferase [Streptococcus oralis ATCC 35037] gi|322375606|ref|ZP_08050118.1| polyA polymerase [Streptococcus sp. C300] gi|291315666|gb|EFE56114.1| tRNA adenylyltransferase [Streptococcus oralis ATCC 35037] gi|321279314|gb|EFX56355.1| polyA polymerase [Streptococcus sp. C300] Length = 399 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 101/398 (25%), Positives = 181/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 129 GEIIDLFHGLEDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEQETFEAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S ++L ++ + Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRVGLSSMIESQAYDYL-PDMAA-SREKLQKLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + K K + R+ + ++ + Sbjct: 246 EADFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILALREEGEL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + ++ + A S IH KK + G + + Sbjct: 303 SKRDCYRFDLDSLLQAESLRQA---QGKEVNPQAIKETYHSLTIHDKKEIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEFAIVDGELENDRQAIHTYLRE 397 >gi|56551952|ref|YP_162791.1| polynucleotide adenylyltransferase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543526|gb|AAV89680.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis ZM4] Length = 406 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 141/400 (35%), Positives = 222/400 (55%), Gaps = 20/400 (5%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + KW H L +++ L VGG+VRD+L+ L V DID AT P++ M + Sbjct: 5 LPDQKWQHQEGLSDLIKALGGDSM-IRFVGGSVRDTLLGLPVNDIDCATRHHPEKTMELI 63 Query: 64 SKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 +K IPT I +GTI + K +IT+LR D+ TDGR+A + ++ +W+ D+ RRDF Sbjct: 64 RSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRRDF 123 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINALYA+ + G V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ N Sbjct: 124 TINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQNN 183 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++ Sbjct: 184 PDPEALAACIKHANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEITAD 243 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+ Sbjct: 244 SILPLQRLVERERLYHLSGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALLTA 302 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + L + G + IA+ L+ +D + ++ + +W++P Sbjct: 303 EEEKPL-------SLAWAIGKEEAIARFL---------LSDRDEATVNSAIALLKNWERP 346 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 +FPL G D++ G+P G V IL + ++ W+ ++F S Sbjct: 347 VFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNSD 386 >gi|317497212|ref|ZP_07955536.1| poly A polymerase head domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895457|gb|EFV17615.1| poly A polymerase head domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 448 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 100/441 (22%), Positives = 183/441 (41%), Gaps = 51/441 (11%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ L + ++ IVGG VRDS++ + D DI T+ P V IF T + T Sbjct: 9 AAKVIQTLEQHGFEAYIVGGCVRDSILGRTPGDWDITTSASPQEVKEIFDHT----VDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R D D R +V FT+ + D LRRDFTINA+ + Sbjct: 65 IEHGTVTVLMNHEPYEVTTYRVDGKYEDHRRPNEVHFTKSLREDLLRRDFTINAMAYNDS 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID G+ DL+N+TI+ +G+A R ED LRILR RF A G + I+ A Sbjct: 125 EGIIDMYDGMTDLKNQTIRCVGEAKKRFDEDALRILRALRFQAQLGFQ-IEEKTEEAIKN 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S+ERI E+ KL+ + +P +V+ Y G+ K IF + + + Sbjct: 184 QAKFLKDISAERIQVELEKLITSAHPEV-LVNAYKLGVTKIIFPEFDIMMETPQNNPHHK 242 Query: 253 EQVFEWKIDSL--------LRFIVLISWQDKKS---------------------ILSMAK 283 V ++++ R+ +L+ K + + + Sbjct: 243 YNVGIHTVEAMKQIKAEHIYRWTMLLHDVGKPTARVEGPDKDHFKMHPVIGEEMARKILR 302 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + + + + + + KK + ++ + + +++ Q Sbjct: 303 RLKFDNQTIKQVTTLVRWHDRRFASIEEVNKKTVRRWVSQLTPELFTRLMEVQKADISAQ 362 Query: 344 D--------------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 +++ + + G D++ G+P GK++G IL Sbjct: 363 SDYQRDKKEQVLQETKKLFEEIIEEKNCLSIKELKINGKDLMDMGVPQGKEIGQILSWLL 422 Query: 390 QEWINSSFQLSQEDLHHLLRK 410 + + +E L + + Sbjct: 423 DQVLEDPQLNERETLTRMAEE 443 >gi|15903456|ref|NP_359006.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae R6] gi|111658462|ref|ZP_01409135.1| hypothetical protein SpneT_02000362 [Streptococcus pneumoniae TIGR4] gi|73619881|sp|Q97PP9|CCA_STRPN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619884|sp|Q8CWQ3|CCA_STRR6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|15459066|gb|AAL00217.1| tRNA nucleotidyltransferase [Streptococcus pneumoniae R6] Length = 399 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 303 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKEIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|182684511|ref|YP_001836258.1| polyA polymerase family protein [Streptococcus pneumoniae CGSP14] gi|226702090|sp|B2IR74|CCA_STRPS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|182629845|gb|ACB90793.1| polyA polymerase family protein [Streptococcus pneumoniae CGSP14] Length = 399 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 303 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKDIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|229826592|ref|ZP_04452661.1| hypothetical protein GCWU000182_01967 [Abiotrophia defectiva ATCC 49176] gi|229789462|gb|EEP25576.1| hypothetical protein GCWU000182_01967 [Abiotrophia defectiva ATCC 49176] Length = 403 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 105/398 (26%), Positives = 174/398 (43%), Gaps = 16/398 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+S L K ++ VGG VRDS+++ +D DI T+ P+ V ++F T I T + + Sbjct: 12 IISRLEKNGYEAYAVGGCVRDSILDRIPEDWDITTSAKPEEVKKLFPAT----IDTGLQH 67 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K+ +++TT R D +DGR+ +V FT D RRDFTINA+ + + Sbjct: 68 GTVTVVIEKEGYEVTTFRLDGDYSDGRHPDRVAFTSSLTEDLKRRDFTINAMAYSEITGL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G DL + I+ +GDA R ED LR+LR RF +I A K Sbjct: 128 IDRFDGEKDLEDGIIRAVGDAEERFSEDALRMLRAIRFAGQLN-FDIAEKTFDAIKKLSP 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-QLSQVIEAEQ 254 + +S ERI E+ KLL + NP I +Y GIF+ I ++ + ++ I+A Sbjct: 187 NISKVSVERIAKELEKLLLSGNP-EYIGLVYEAGIFEVIAPEIAALFDKGEIYNSIKAVS 245 Query: 255 VFEWKIDSLL---RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + L R + + S + K+F L + + + S Sbjct: 246 CTSYPEKKELYQIRTALFLERLGADSAAKLLKRFKLDNDTINTVKKLIGLLQREVEASAL 305 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 E+++ G K+M + + +L + G D++ Sbjct: 306 EMRRTVKEAGHKIMP----LLFEARRAKALTDSSKLYENLLVRGECTDIAGLKVNGKDLM 361 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + GIP G +G L + I + ++E L ++ Sbjct: 362 EAGIPKGIMIGQTLERLLELVIENPELNTREGLLSEVK 399 >gi|239624748|ref|ZP_04667779.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521134|gb|EEQ61000.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 448 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 106/445 (23%), Positives = 181/445 (40%), Gaps = 57/445 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL+ LN ++ +VGG VRD ++ D DI T+ LP++V ++F +T + T Sbjct: 9 AEEILTKLNDNGYEAYVVGGCVRDMILGREPGDWDITTSALPEQVKQVFRRT----VDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R D DGR+ V FT D RRDFTINA+ + Sbjct: 65 IQHGTVTVMMGDEGYEVTTYRIDGEYADGRHPDSVTFTPSLTEDLKRRDFTINAMAYNGN 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG++DL I+ +G+ R ED LRILR RF A G I+ A Sbjct: 125 TGLVDEFGGMDDLDRGIIRCVGEPMDRFSEDALRILRAIRFSAQLG-FTIEGRTYEAIRA 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI-------FKEIFLDVQEISLDQ 245 + +S ERI E+ KLL + NP + I +Y GI F +++ ++ LD+ Sbjct: 184 IAPNMVHVSKERIQVELTKLLLSPNPGH-INMVYETGISPYVSETFHKVYCREEDGGLDE 242 Query: 246 LSQV-----------------------IEAEQVFEWKIDSLL----------RFIVLISW 272 QV +E E + + + R+ + Sbjct: 243 GKQVEREDGQRPECADRQRPEGENGRQVEREDGKPFFVIPAIPAQVPPVRHMRWAAFLRK 302 Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332 + + K L + + + + + I+ + L Sbjct: 303 CPPDEAVRILKDLKLDNDTINRVRTLVSWQDYRLGPDKYSIRTAMSRMEPDLFDDLLDFR 362 Query: 333 LALHYNNLTHQDTC-----FILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGN 383 + L TC ++ +I + + G+D++K G+ PGK+VG Sbjct: 363 MCLAQMESEGNKTCQEHLAHTAMLVDEIRRDGDCISLKTLAVGGNDIIKAGVKPGKEVGL 422 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLL 408 L + + + ++E L L Sbjct: 423 ALARLLEMVLEEPGRNTKEYLLQHL 447 >gi|259417404|ref|ZP_05741323.1| polynucleotide adenylyltransferase region [Silicibacter sp. TrichCH4B] gi|259346310|gb|EEW58124.1| polynucleotide adenylyltransferase region [Silicibacter sp. TrichCH4B] Length = 386 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 128/409 (31%), Positives = 196/409 (47%), Gaps = 28/409 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + + L + VGG VR++L+ V D+D++T + P+RV+ + Sbjct: 3 IDQPWLTSASTRAVCDALIAARAEIYFVGGCVRNALLQEPVSDLDLSTNVEPERVVEAAT 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT I +GT+ ++ F+ITT R D+ TDGR A V F D D+ RRDFT+ Sbjct: 63 IAGLKAIPTGIDHGTVTVVAGGIPFEITTFRKDVATDGRRAVVAFATDIAEDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G+V+D +GGL+DLR R ++FIGDA RI EDYLRILR+FRF + YG+ + Sbjct: 123 NALYARPNGEVVDPLGGLDDLRARRVRFIGDATQRIREDYLRILRYFRFHSWYGDAAEGF 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + L A + ++GL LS ER+ SE+ KLL A +P +I M G+ + + + Sbjct: 183 DPEALGAIAETQEGLDHLSRERVGSEMIKLLSAADPAPSIATMRQIGVLAHVLPGADDRA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + I + R L + + ++ + S R L+ Sbjct: 243 LAPLIHLEA-----GMPIKAETRLAALGGDRIQDTL-----RLSKSTAARVRLLRQLAEG 292 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +L Y + L + AL L+ Q + DI Sbjct: 293 MAGGA-------ELAYRHDVDTARRALMLRSALLEMPLSPQ-------LEPDIALGASAK 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 FP++ D++ G +G+ L + EWI S FQ+ ++DL L + Sbjct: 339 FPISAQDLMP--FVQGAALGHALKTLEAEWIASGFQIDKQDLIERLPDI 385 >gi|322387336|ref|ZP_08060946.1| polyA polymerase family protein [Streptococcus infantis ATCC 700779] gi|321141865|gb|EFX37360.1| polyA polymerase family protein [Streptococcus infantis ATCC 700779] Length = 399 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 99/399 (24%), Positives = 183/399 (45%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+++N + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDAILNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 129 GKIVDLFDGLRDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEQETFEAMKA 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S ERI+ E +KLL A + M + + D+ S ++L + + Sbjct: 188 LTPLLDKISVERIFVEFDKLLLAPYWRVGLSSMIESQAYDYL-PDMVG-SQEKLQSLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E+ F ++ S + L+ + + K + R+ + + + L++ E Sbjct: 246 EKDFTFE-SSEQAWAALLWVLEVEDAQQFLKHWKTSRQFAKQVQNLLSI------LALRE 298 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 +L + + L L + I + + K + G ++K Sbjct: 299 EGELGNRDCYRFDLDLLLQAENLRRAQGKEVNPQAITETYESLTIHDKKEMQINGGILIK 358 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG ++G++L + ++ + E +H LR+ Sbjct: 359 EYGYHPGPELGDVLEEIEYAIVDGNLDNEVEAIHAYLRE 397 >gi|295398917|ref|ZP_06808899.1| Polynucleotide adenylyltransferase region [Geobacillus thermoglucosidasius C56-YS93] gi|294978383|gb|EFG53979.1| Polynucleotide adenylyltransferase region [Geobacillus thermoglucosidasius C56-YS93] Length = 404 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 112/399 (28%), Positives = 183/399 (45%), Gaps = 18/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L K ++ VGGAVRD L+ ++ D+DIAT+ LP VM++F KT I Sbjct: 8 ALGIIRQLKKHGYEAYFVGGAVRDLLLKRNIGDVDIATSALPHEVMQLFPKT----IDIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 +GT+ +I +++TT R+D D R + V F R D RRDFT+NA+ D+ Sbjct: 64 SQHGTVVVIHDGIPYEVTTFRADGNYEDHRRPESVTFVRSLYEDLKRRDFTMNAIAMDEA 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID GG + + NR I +GD R ED LR++R RF + G ++D + A I+ Sbjct: 124 GKLIDPFGGQDAITNRMICTVGDPKERFSEDALRMMRAIRFVSQLG-FSLDEETKQAIIE 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S ER+ E KLLE A+ + +F + L + ++ Sbjct: 183 NAPLLAHISVERMTMEFEKLLEGPFASRALSLLVETRLFFYL------PMLCEKENELQT 236 Query: 253 EQVFEW-KIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++W K+DS R+ L S + + + LP I + + + S Sbjct: 237 AARYDWRKLDSRGQRWGFLCHILRVDSPVRFLRAWKLPNRIIKEVETVLRIVQTTHSDSD 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 K+ + +G + IA + + N+ + +S I K + G D+ Sbjct: 297 WT-KERLFAFGLEHAIAAETVRSVANGENVDERRKKLRELFMSLPIK-TKSELAVRGHDI 354 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K +G P G V IL ++ I+ + +E +H L Sbjct: 355 MKWFGKPGGPWVKEILELIERAVIHGEVENHKERIHEWL 393 >gi|238854426|ref|ZP_04644767.1| putative tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus jensenii 269-3] gi|260664441|ref|ZP_05865293.1| tRNA adenylyltransferase [Lactobacillus jensenii SJ-7A-US] gi|282934012|ref|ZP_06339300.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1] gi|313472159|ref|ZP_07812651.1| poly A polymerase [Lactobacillus jensenii 1153] gi|238832953|gb|EEQ25249.1| putative tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus jensenii 269-3] gi|239529533|gb|EEQ68534.1| poly A polymerase [Lactobacillus jensenii 1153] gi|260561506|gb|EEX27478.1| tRNA adenylyltransferase [Lactobacillus jensenii SJ-7A-US] gi|281301922|gb|EFA94178.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1] Length = 396 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 106/407 (26%), Positives = 184/407 (45%), Gaps = 38/407 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ L K ++ VGG+VRD L+N + D+DIAT+ P+ V ++F ++ I T Sbjct: 13 ALPVVQTLTKAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQLFERS----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ D R V F ++ + D RRDFTINAL D+ Sbjct: 69 IQHGTVTVLYDDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTINALAMDEY 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G + D GL+DL+N IK +G+ R ED LR++R RF + + +++ + A Sbjct: 129 GNIHDLFNGLDDLKNGLIKAVGNPERRFNEDALRMMRAVRFMSQL-KFSLEENTRQAICD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+ + +A + + +E+ D + +QLS Sbjct: 188 HHELLSKISVERIREEFVKMCVGPHARSAFQVFLDTQLSEEV-PDFRGKK-EQLSVFPSL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE-IRYFLISFFNCNFNQKTLSIP 311 + +L LP E I F+ + N NQ T + Sbjct: 246 TFSPSTEASVWAIIAIL---------------LKLPNEQIPKFMRDWKNS--NQMTRKVE 288 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL--QVLSDIIHWKKPLFPLT--- 366 EI F L D ++FLA ++ D IL V S+ + + P+ Sbjct: 289 EIVFFFDLLSDHSPSD-YELFLAGQDTVMSACDVARILGQPVNSEALVDRYVALPIKNHK 347 Query: 367 -----GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G ++++GI PG +G++L + ++ +E + + + Sbjct: 348 ELVVDGSTLIEWGIKPGPSLGDMLAKITEAVVDGKIANDEEAIKNFI 394 >gi|138895759|ref|YP_001126212.1| tRNA CCA-pyrophosphorylase [Geobacillus thermodenitrificans NG80-2] gi|196248641|ref|ZP_03147341.1| Polynucleotide adenylyltransferase region [Geobacillus sp. G11MC16] gi|166233855|sp|A4IQ63|CCA_GEOTN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|134267272|gb|ABO67467.1| Poly(A) polymerase [Geobacillus thermodenitrificans NG80-2] gi|196211517|gb|EDY06276.1| Polynucleotide adenylyltransferase region [Geobacillus sp. G11MC16] Length = 404 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 104/397 (26%), Positives = 171/397 (43%), Gaps = 14/397 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ LN+ ++ VGGAVRD L+ + D+DIAT+ LPD VM IF KT I Sbjct: 8 ALGIIRQLNRHGYEAYFVGGAVRDLLLGRPIGDVDIATSALPDEVMAIFPKT----IDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 +GT+ ++ +++TT R+D D R + V F R + D RRDFT+NA+ D+ Sbjct: 64 SKHGTVVVVHEGTAYEVTTFRTDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID GG + R I+ +G+A R ED LR++R RF + G ++ D A I Sbjct: 124 GTIIDPFGGQEAIEKRLIRTVGEADARFREDALRMMRAVRFVSQLG-FSLAIDTKKAIIA 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S ER+ E+ KLL A+ + G+ + + E + L + A Sbjct: 183 NAPLLAHISVERMTMEMEKLLAGPFAAEALPLLAETGLSTYL-PGLAEKG-EWLRRA--A 238 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + W R+ +L K + + LP ++ + + Sbjct: 239 AYRWPWLAAREERWALLCHALGVKESRPFLRAWKLPNKVIDEAGAILATLAAVPEPAAWT 298 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + +L G K ++ + AL Q + + I K + G V+ Sbjct: 299 -NEQLFLAGLKRALSVEVVRAALTGKPYEPQHDELRRRFAALPIK-TKGELAVNGKVVID 356 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G P G V L + +N + +E ++ L Sbjct: 357 WIGKPAGPWVKETLDAIWRAVVNGEVENEKERIYAWL 393 >gi|221232267|ref|YP_002511420.1| CCA-adding enzyme [Streptococcus pneumoniae ATCC 700669] gi|225854998|ref|YP_002736510.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae JJA] gi|220674728|emb|CAR69301.1| CCA-adding enzyme [Streptococcus pneumoniae ATCC 700669] gi|225723806|gb|ACO19659.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae JJA] Length = 394 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 184/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A S IH KK + G + + Sbjct: 298 SKRDCYRFDLDLLLQAENLRQA---QGKEVNPQVIKETYQSLTIHDKKEIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|322389621|ref|ZP_08063169.1| polyA polymerase family protein [Streptococcus parasanguinis ATCC 903] gi|321143620|gb|EFX39050.1| polyA polymerase family protein [Streptococcus parasanguinis ATCC 903] Length = 403 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 94/406 (23%), Positives = 187/406 (46%), Gaps = 17/406 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L++ + D+DIA++ P+ IF +T + Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLDRPIHDVDIASSSYPEETKAIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 68 GIEHGTVLVLENGQEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G+++D GL DL N+ ++ +G + R ED LRI+R FRF A G ++ A Sbjct: 128 KGEIVDLFHGLEDLENKVLRAVGLPNERFNEDALRIMRGFRFQASLG-FELEEATFDAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L+ +S ER + E +KLL + + M G + + ++++ + + ++ + Sbjct: 187 ECAPLLEKISVERTFIEFDKLLLSPYWRQGLEAMLASGAYHYL-PEMKDRK-EAIERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 E + + S + L+ + + I KK+ R+ + ++ S+ Sbjct: 245 IELEYTFST-SEQAWAALVLALEIQDIPKFFKKWKTSRDFAKTVEQIVEILKLREKGSLD 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + Y ++ +L+ AL N L I +V + K + G ++ Sbjct: 304 KRACYKYEKRLLLLAEELREAYALSVNYLA------IERVYDSLTIHDKHEVVVNGGTLI 357 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 K YG PG +G +L + ++ +E + +++ + Sbjct: 358 KDYGFQPGPALGEMLTKIEYAIVDGELANEKEAIIAYIQQAKEEEK 403 >gi|148997378|ref|ZP_01824983.1| polyA polymerase family protein [Streptococcus pneumoniae SP11-BS70] gi|168575248|ref|ZP_02721211.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae MLV-016] gi|169834239|ref|YP_001694961.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae Hungary19A-6] gi|147756433|gb|EDK63474.1| polyA polymerase family protein [Streptococcus pneumoniae SP11-BS70] gi|168996741|gb|ACA37353.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae Hungary19A-6] gi|183578709|gb|EDT99237.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae MLV-016] gi|301794565|emb|CBW37009.1| CCA-adding enzyme [Streptococcus pneumoniae INV104] gi|301800387|emb|CBW33018.1| CCA-adding enzyme [Streptococcus pneumoniae OXC141] Length = 394 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 186/399 (46%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + I + + K + GD ++K Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA----QGKEVNPQAITEKYQSLTIHDKKEIQINGDILIK 353 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|89067444|ref|ZP_01154957.1| polyA polymerase family protein [Oceanicola granulosus HTCC2516] gi|89047013|gb|EAR53067.1| polyA polymerase family protein [Oceanicola granulosus HTCC2516] Length = 383 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 129/407 (31%), Positives = 196/407 (48%), Gaps = 26/407 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ ++ +W + +LL ++ VGG VR++L+ V D+D+AT P+RV+ Sbjct: 1 MTRLEAEWLTRPASRVVCNLLTDAGYQAWFVGGCVRNALIGAPVSDLDLATNAHPERVLA 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + K IPT I++GT+ ++ +++TT R D+ TDGR A V F + D+ RRD Sbjct: 61 LAEAAGLKAIPTGIAHGTVTLVVEGAPYEVTTFRRDVETDGRRAVVAFADSLEEDARRRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-- 179 FT+NALYA G + D +GGL DLR R ++FIGDA RI EDYLRILRFFRF A YG+ Sbjct: 121 FTMNALYAAPDGTIADPIGGLPDLRRRQVRFIGDAEARIREDYLRILRFFRFHAWYGDAG 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D+DGL A + +G+ LS ERI E+ +LL A +P A+ M G ++ Sbjct: 181 AGLDADGLAACAQHVEGVAGLSRERIGHEMLRLLAAPDPAPAVAAMEACGALAQVLPGAG 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 QL+ +++ E+ R L QD + L ++ L + Sbjct: 241 A---GQLAVLVDLEERAGLAPGWPRRLAAL-GGQDADTA------LRLSKDEAKRLRTLR 290 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 ++ +L Y G V + L + A+ + +D H Sbjct: 291 EALGSEAGPG-----ELGYRLGAAVALDVLALRGAMEVRPVAPEDA-------DATRHGA 338 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 K FPLT D++ G +G L + WI S F L +E L Sbjct: 339 KQTFPLTAADLIDRH--QGPALGQALRDAEARWIASGFALGREALLA 383 >gi|149185903|ref|ZP_01864218.1| tRNA nucleotidyltransferase [Erythrobacter sp. SD-21] gi|148830464|gb|EDL48900.1| tRNA nucleotidyltransferase [Erythrobacter sp. SD-21] Length = 391 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 127/415 (30%), Positives = 203/415 (48%), Gaps = 25/415 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M ++ W DL +++ L + VGGAVRD+L+ ++ D+D+AT +LP V+ Sbjct: 1 MATLPNADWTKREDLAQLIAALGADN--ARYVGGAVRDTLLGKAIHDVDLATPLLPHEVI 58 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + + +PT I +GT+ I + +ITTLR D+ +DGR A V F ++WK D+ RR Sbjct: 59 DRCREAGIRTVPTGIDHGTVTAILPEGPVEITTLRRDVSSDGRRATVAFAQEWKDDASRR 118 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYA ++ D+ GG+ DL ++FIG+A RI ED+LRILR+FRF A +G+ Sbjct: 119 DFTINALYAHPGSLEIEDFFGGVADLERGHVRFIGEAEERIREDHLRILRYFRFQARFGD 178 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + + A LK LS ER+ E+ +L P I M G+ + I + + Sbjct: 179 -ALDEEAVNACRDLAHTLKGLSRERVAMELLAILALPAPSPTIGLMKELGVLEVILPEAR 237 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + L+Q++EAE D++ R L+ K S+A + L R+ R L+ Sbjct: 238 DRETQCLAQLVEAEAREGVDGDAVRRLAALLPPI-KSVAESVAARLRLSRQQRARLV--- 293 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 C ++ + L Y G + +L + + ++ + W+ Sbjct: 294 -CAAERREEDAAAPRALAYFEGVEGARDRLLL----------------KGESVAALRDWE 336 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P PL G ++V G+ G +V L + W+ F L L +L AS Sbjct: 337 VPQLPLKGGEIVARGVGAGPEVARTLRAVEARWVEEGFPDRSRVLELLEHELAAS 391 >gi|307068199|ref|YP_003877165.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus pneumoniae AP200] gi|306409736|gb|ADM85163.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus pneumoniae AP200] Length = 399 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 186/399 (46%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 129 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + I + + K + GD ++K Sbjct: 303 SKRDCYRFDIDLLLQAENLRQA----QGKEVNPQAITEKYQSLTIHDKKEIQINGDILIK 358 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 359 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 397 >gi|312127262|ref|YP_003992136.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor hydrothermalis 108] gi|311777281|gb|ADQ06767.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor hydrothermalis 108] Length = 394 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 105/396 (26%), Positives = 181/396 (45%), Gaps = 18/396 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ LN+ K+ +VGG VRD L+ QD DIAT P+ V+ +F KT IPT Sbjct: 7 EPMKVIRTLNQHGFKAYLVGGCVRDYLLGKEPQDFDIATDAKPEDVIHLFEKT----IPT 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I ++TT R + + R+ KV F D RRDFTINA+ Sbjct: 63 GIKHGTVTVIINGVKIEVTTFRIEKEYKNHRWPKVEFINSLFEDLRRRDFTINAMAYHPD 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I+++ A Sbjct: 123 EGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFVTQL-SFVIENETFEALKS 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S ERI E++K LE+KN + +Y G+ I + +I L + + Sbjct: 182 LKDLLKKISKERINIELSKTLESKNSSYGLKLLYESGVGSIIISEYSQIYL----YLSQV 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F + F + +D I + + ++ CN+ S + Sbjct: 238 EFDFIPTKFKVPAFFACL--KDNTLIEKLMRDLKFEKKKINAAAKL--CNYLTMECSQDK 293 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + K + +K L L + H+ + + K L G+D++ Sbjct: 294 LVKKIFFEEEKEAEEILTTISILKSD---HRILQIFNDLKRENKLIHKKDVQLRGEDLLI 350 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ G+ +G +L + + + + +++++ + + Sbjct: 351 LGLK-GEMIGKVLKSVYEYILENPEKNNKDEILNYV 385 >gi|160881945|ref|YP_001560913.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium phytofermentans ISDg] gi|160430611|gb|ABX44174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium phytofermentans ISDg] Length = 459 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 113/446 (25%), Positives = 188/446 (42%), Gaps = 65/446 (14%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + VGG VRDSL+ D DI T+ P V +IFS+T I T I + Sbjct: 12 IIEELMSHGFEGYAVGGCVRDSLLGRIPGDWDITTSANPCEVKQIFSRT----IDTGIKH 67 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K+ F++TT R D D R+ K V +T++ D RRDFTINA+ + + + Sbjct: 68 GTVTVMLGKEGFEVTTYRLDGEYEDNRHPKQVEYTKNLIEDLKRRDFTINAMAYNAKDGL 127 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GL DL+++ I+ +G A R ED LRILR RF A I+ + L A Sbjct: 128 VDEFEGLKDLQDKKIRCVGSADQRFDEDALRILRAVRFSAQLN-FTIEDETLAAIRLKAL 186 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LK +S+ERI E+NKLL + +P I+ Y G+ + I + ++ +L + V Sbjct: 187 NLKNISAERIREELNKLLLSSHPKK-IMIAYETGLTEVILPEFDQMLATKLQGPYQQSSV 245 Query: 256 FEWKIDSLLRF-------------------IVLISWQDKKSIL----------------- 279 E +++L F +L+ K I Sbjct: 246 GEHTLEALRYFTKNLSKDVEDKKQQLIYCWAILLHDVAKPVIKDNNPQVLNQEHQTKGAN 305 Query: 280 ---SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 S+ ++ E + + S +I++ G+K M + L Sbjct: 306 IAKSILRRLKFDNETIESVTKLVYYHNFTFGHSKEDIRRATNQIGEKYMP----MLFVLQ 361 Query: 337 YNNLTHQDTCFILQVLSDIIHWKK--------------PLFPLTGDDVVKYGIPPGKKVG 382 N+ +D+ I ++ D+ K+ + G D++ G GK +G Sbjct: 362 ECNMQTKDSQVIEEMEKDLKRAKELYQDMIEHGECVSLKSLAVNGKDLMDQGFESGKNIG 421 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408 +L ++ I +++ L + Sbjct: 422 VLLDMLLEKVIIDPSLNTKDQLLKIA 447 >gi|91204980|ref|YP_537335.1| Poly(A) polymerase [Rickettsia bellii RML369-C] gi|157827690|ref|YP_001496754.1| Poly(A) polymerase [Rickettsia bellii OSU 85-389] gi|91068524|gb|ABE04246.1| Poly(A) polymerase [Rickettsia bellii RML369-C] gi|157802994|gb|ABV79717.1| Poly(A) polymerase [Rickettsia bellii OSU 85-389] Length = 398 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 140/400 (35%), Positives = 222/400 (55%), Gaps = 20/400 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ILSLLNK ++ ++GG+VRD+L+ DIDIAT +LP+ V I S+ + K IPT + Sbjct: 17 KILSLLNKKG-EARLIGGSVRDALLGKESYDIDIATNLLPNEVTSILSQAKIKTIPTGLK 75 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 +GTI I K+ F ITTLR D+ +GR+AKVVFT D+ D+ RRDFTINAL +GK+ Sbjct: 76 FGTITAILEKEQFQITTLRKDIECNGRHAKVVFTNDFAEDAERRDFTINALSYCPFKGKI 135 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 DY G DL+ R + FI AH RI EDYLRILRFFRF ++Y + ++ +G A + K Sbjct: 136 YDYFNGFEDLKQRKVVFIRAAHQRIKEDYLRILRFFRFSSYYANR-LNPEGFKACDELKS 194 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 GL LS ERI SE ++++ + N + M+ GI IF +Q + AEQ Sbjct: 195 GLMSLSRERIKSEFDRIIVSSNSPEVLKAMFEIGILALIF-SIQNYEIKI------AEQA 247 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 + ++ R+ +L+ +Q ++ + + + ++S + ++ ++ +IKK Sbjct: 248 KSFNLELSTRYALLLYYQKDLNLKNFLD-WKFSKHETIQILSILDF-IHKNIITEFDIKK 305 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 ++ + + L N L D I + ++ ++P FP+ G+D++ I Sbjct: 306 IWLEHKN-------YKEYLLTANILGKIDYSQITKFINIYDSLERPKFPINGNDLLNMNI 358 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 K++G L + K+ WI+ F+LS+ +L LRK +S+ Sbjct: 359 EQ-KEIGKKLNYLKKIWIDQDFKLSKLELVSFLRKQESSN 397 >gi|297717904|gb|ADI50095.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13] Length = 379 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 132/399 (33%), Positives = 203/399 (50%), Gaps = 29/399 (7%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + S L++I + + VGG VRD+L+ L+ DID+A+ + P++ + + + Y Sbjct: 3 INISPLLSIKKIYDDAGFPLRFVGGCVRDTLLGLTPNDIDLASPLPPEQGLALLAAQGYT 62 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 VIPT + +GT ++ K ++ITTLR D+ TDGR A + +T W+ D+ RRDFTINALY Sbjct: 63 VIPTGMEHGTFTLVIDKVPYEITTLRRDVATDGRRATIAYTDKWEEDAARRDFTINALYM 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D G + DY G DL+ T++FIG A RI EDYLRILRFFRF + ++ + + Sbjct: 123 DFDGTIYDYANGQQDLKKGTVRFIGQAADRIQEDYLRILRFFRFHQRFSKQPVSCELKAI 182 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K +K LS+ERI E LLE+ NPL + M I + FL+ E LD L + Sbjct: 183 FQKFSPQIKTLSAERITKEFLLLLESSNPLLELSIMDECQILPQ-FLESYE--LDNLKLL 239 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 ++ E +L RF L + + L + +L + N + +S Sbjct: 240 LDMEMSVSAAPSALRRFHAL---------KCSSHQLRLSNKQSKYLAAL---NLLEAEMS 287 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + L Y YG ++ L Q++ L+ S +I P FPL G D Sbjct: 288 SHSLFYLAYKYGLPEILDIF----------LVRQESKRWLEFKSLVI----PPFPLNGQD 333 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ GI PG ++G L + +W S ++L++E+L L Sbjct: 334 LITIGIKPGARLGKALNDAEYQWAASEYKLTKENLLQYL 372 >gi|260752500|ref|YP_003225393.1| polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551863|gb|ACV74809.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 406 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 141/400 (35%), Positives = 222/400 (55%), Gaps = 20/400 (5%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + KW H L +++ L VGG+VRD+L+ L V DID AT P++ M + Sbjct: 5 LPDQKWQHQEGLSDLIKALGGDSM-IRFVGGSVRDTLLGLPVNDIDCATRHHPEKTMELI 63 Query: 64 SKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 +K IPT I +GTI + K +IT+LR D+ TDGR+A + ++ +W+ D+ RRDF Sbjct: 64 RSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRRDF 123 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINALYA+ + G V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ N Sbjct: 124 TINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQNN 183 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++ Sbjct: 184 PDPEALAACIKRANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEITAD 243 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+ Sbjct: 244 SILPLQRLVERERLYHLSGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALLTA 302 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + L + G + IA+ L+ +D + ++ + +W++P Sbjct: 303 EEEKPL-------SLAWAIGKEEAIARFL---------LSDRDEATVNSAIALLKNWERP 346 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 +FPL G D++ G+P G V IL + ++ W+ ++F S Sbjct: 347 VFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNSD 386 >gi|197302364|ref|ZP_03167421.1| hypothetical protein RUMLAC_01093 [Ruminococcus lactaris ATCC 29176] gi|197298543|gb|EDY33086.1| hypothetical protein RUMLAC_01093 [Ruminococcus lactaris ATCC 29176] Length = 444 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 106/437 (24%), Positives = 188/437 (43%), Gaps = 48/437 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ I++ L ++ VGG VRDS++ QD DI T+ P+ + ++F +T I T Sbjct: 9 VLFIINNLQLHGYEAFAVGGCVRDSILARRPQDWDITTSAKPEEIKKLFRRT----IDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ K F++TT R D D R+ +V FT + D RRDFTINA+ + Q Sbjct: 65 IEHGTVTVLFGKDSFEVTTYRIDGAYEDSRHPKEVQFTNRLEEDLRRRDFTINAMAYNDQ 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D GG+ DL + I+ +GD R ED LRILR RF A I+S A K Sbjct: 125 VRLVDVFGGMQDLNHHLIRCVGDPEERFSEDALRILRAVRFSAQLN-FPIESATADAIRK 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S+ERI +E+ KLL + +P I Y G+ K I + + + Sbjct: 184 LAPNLQNISAERIQAELVKLLVSPHPER-IRDAYELGLTKVILPEWDAMEGVAQNTPHHK 242 Query: 253 EQVFEWKI--------DSLLRFIVLISWQDK----------------------KSILSMA 282 V E + D +LR +L K + S+ Sbjct: 243 YDVAEHTLRALKNVKRDKILRLTMLFHDMGKPMMKTTDENGRDHFRGHALVSEELARSIM 302 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 + E + + + + +++ G ++ L LA + Sbjct: 303 HRLKFDNETIRTVTKLVCYHDYRVEATPKNVRRAMNRIGVELFPYYLAARLADVKAQSPY 362 Query: 343 QDTCFI------LQVLSDIIHWKKP----LFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 Q I ++ +II ++ + G +++ G+ PG+++G++L + Sbjct: 363 QKREKIENIVEMRRLYQEIIKKQECVTLRQLAVGGRELMDLGMKPGRELGSMLSELLEYV 422 Query: 393 INSSFQLSQEDLHHLLR 409 ++ + +E L ++ Sbjct: 423 LDDPARNDKEILCAYVK 439 >gi|294085752|ref|YP_003552512.1| putative poly(A) polymerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665327|gb|ADE40428.1| putative poly(A) polymerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 407 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 114/395 (28%), Positives = 194/395 (49%), Gaps = 19/395 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ I + K ++ IVGGAVRD L + V DID+A + +R + +VI T Sbjct: 29 VMRIFDIAQKAGGEARIVGGAVRDWLAGMEVGDIDMAVNMPIERFADTLEQEGLRVIHTG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +S+GT+ ++ K +IT R D+ TDGR+AKV + DW D+ RRDFTINA+Y D GK Sbjct: 89 LSHGTVTVVQDKTKIEITHTRLDIETDGRHAKVTHSPDWLEDARRRDFTINAIYMDAAGK 148 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D + G +DL+ ++F+GDA R+ ED LR+LR+ RF +G ID+D L A + Sbjct: 149 IFDPLNGQDDLQAGILRFVGDADRRVQEDALRMLRYCRFLHRFGRGQIDADALAAFRRNA 208 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + LS ER+ +E+ +L A A M + G+ ++D + Sbjct: 209 SLAQHLSGERVRTEMELILVADGAAKACTLMQDTGLA------TAACAIDFNVGCL---- 258 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEI 313 + D I L S + +S+AK+ L + L + + + L+ + Sbjct: 259 APDGAPDRDNWLIGLASIMPPGTAISLAKRLRLSKIEARRLQAMDRDIDPALPNLAGDKW 318 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 ++ + GD A++ F ++ +W P P+TG D++ + Sbjct: 319 QQAAWFLGDGSA--------AIYAVKTRRSQAQFSTTRWDELQNWTAPECPVTGADLLSH 370 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ G G+IL++ +++W+ S F L++ L ++ Sbjct: 371 GVDNGPICGDILLNIQKQWVASGFTLTKPALLAMI 405 >gi|218132748|ref|ZP_03461552.1| hypothetical protein BACPEC_00609 [Bacteroides pectinophilus ATCC 43243] gi|217992474|gb|EEC58477.1| hypothetical protein BACPEC_00609 [Bacteroides pectinophilus ATCC 43243] Length = 424 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 96/410 (23%), Positives = 178/410 (43%), Gaps = 23/410 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D ILS L ++ +VGG VRDSL+ + D DI T+ LP +V ++F +T + T Sbjct: 19 DAQEILSTLEADGRQAYVVGGCVRDSLIGRTPGDWDITTSALPMQVKQLFRRT----VDT 74 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R D DGR+ V F+ + + D RRDFTINA+ + Sbjct: 75 GIKHGTVTVMMGDTGYEVTTYRIDGNYADGRHPDSVEFSANLRDDLKRRDFTINAMAYNN 134 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 ++D G+ DL+ ++ +GDA R ED LR++R RF A G ID D A Sbjct: 135 SDGLVDEFNGIGDLQAGIVRCVGDARERFTEDALRMMRAIRFSAQLG-FIIDEDTYSAIG 193 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + +S ERI E+ K+L + +P + + + + + + + + I D+ Sbjct: 194 AMADTISKVSMERIHDELGKILMSDHP-DYVKRLCDTRLTQYVLPVMDSILTDR-RCNST 251 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + LR+ L + D + + K L + + + P Sbjct: 252 LTLLMHAGNSPYLRYAALYNAADADNANAELKALKLDNNTINTVTKIVRLSKTSIDETEP 311 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNN---------LTHQDTCFILQVLSDIIHW---- 358 +++ ++YG + ++ ++ + I ++ +II Sbjct: 312 AVREAIHMYGRDFLPLLMRHQTSVIAAKEETTGIMMTAARKHVEVINRLYEEIIKRGDCI 371 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++G D+++ G+ G ++G L + + +E L +L Sbjct: 372 SIKDLDISGSDLMELGMS-GPRIGETLNSMLHIVMENPKLNDKETLIAML 420 >gi|148988607|ref|ZP_01820040.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73] gi|148990379|ref|ZP_01821551.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73] gi|168491552|ref|ZP_02715695.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC0288-04] gi|168493459|ref|ZP_02717602.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC3059-06] gi|147924334|gb|EDK75426.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73] gi|147925808|gb|EDK76883.1| predicted S-transferase [Streptococcus pneumoniae SP6-BS73] gi|183574130|gb|EDT94658.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC0288-04] gi|183576258|gb|EDT96786.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC3059-06] Length = 394 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 186/399 (46%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S ++L+++ + Sbjct: 183 LTPLLENISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQNKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + I + + K + GD ++K Sbjct: 298 SKRDCYRFDIDLLLQAENLRQARGKEV----NPQAITEKYQSLTIHDKKEIQINGDILIK 353 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|218673043|ref|ZP_03522712.1| poly(A) polymerase protein [Rhizobium etli GR56] Length = 365 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 127/344 (36%), Positives = 194/344 (56%), Gaps = 6/344 (1%) Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 + +GT+ ++ K F++TTLR+D+ TDGR AKV F+ DWKAD+ RRD TINALYAD +G Sbjct: 22 GLQHGTVTLVIDGKPFEVTTLRTDVETDGRRAKVAFSTDWKADAERRDLTINALYADAEG 81 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +V+D VGGL D+ R I+FIGDA RI ED+LRILRFFRFFA+YG D++GL A A Sbjct: 82 EVVDLVGGLADIETRNIRFIGDAATRIAEDHLRILRFFRFFAYYGSGRPDAEGLKACAAA 141 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + LK LS+ER+WSE+ KLL A +P A++ M + EI + + +D + ++ E Sbjct: 142 RSKLKTLSAERVWSELRKLLGADDPGRALLWMRQVAVLTEILPESERWGIDAIPSLVATE 201 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 + W D LLR ++ D + ++A + L L ++ L+ Sbjct: 202 KALGWAPDPLLRLAAIVP-PDAARLEALAARLKLSNAEAATLKAWAITAPVNDELTSAAF 260 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKKPLFPLTGD 368 ++L Y G + +LK+ L + + + ++L + WKKP FP+ G Sbjct: 261 ERLLYRNGADGITTRLKLALGVARGKAESDLDEMARSARLGKLLDQAMTWKKPQFPVNGA 320 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 DV+ G P G +VG +L + +W+ +F + L L++L+ Sbjct: 321 DVIAAGTPSGPRVGELLAVLENQWVEENFASDRAALLARLQQLV 364 >gi|168483567|ref|ZP_02708519.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC1873-00] gi|172043170|gb|EDT51216.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae CDC1873-00] gi|332200121|gb|EGJ14194.1| CCA-adding enzyme [Streptococcus pneumoniae GA47368] Length = 394 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 186/399 (46%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S ++L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQNKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + I + + K + GD ++K Sbjct: 298 SKRDCYRFDIDLLLQAENLRQARGKEV----NPQAITEKYQSLTIHDKKEIQINGDILIK 353 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|307127766|ref|YP_003879797.1| CCA-adding enzyme [Streptococcus pneumoniae 670-6B] gi|306484828|gb|ADM91697.1| CCA-adding enzyme [Streptococcus pneumoniae 670-6B] Length = 394 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 186/399 (46%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWATLLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + I + + K + GD ++K Sbjct: 298 SKRDCYRFDIDLLLQAENLRQARGKEV----NPQAITEKYQSLTIHDKKEIQINGDILIK 353 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|225859313|ref|YP_002740823.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae 70585] gi|225720864|gb|ACO16718.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pneumoniae 70585] Length = 394 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 185/399 (46%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + + + K + GD ++K Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA----QGKEVNPQATTEKYQSLTIHDKKEIQINGDILIK 353 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|256851142|ref|ZP_05556531.1| tRNA adenylyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260660566|ref|ZP_05861481.1| tRNA adenylyltransferase [Lactobacillus jensenii 115-3-CHN] gi|282934524|ref|ZP_06339778.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1] gi|297206009|ref|ZP_06923404.1| tRNA adenylyltransferase [Lactobacillus jensenii JV-V16] gi|256616204|gb|EEU21392.1| tRNA adenylyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260548288|gb|EEX24263.1| tRNA adenylyltransferase [Lactobacillus jensenii 115-3-CHN] gi|281301417|gb|EFA93707.1| tRNA adenylyltransferase [Lactobacillus jensenii 208-1] gi|297149135|gb|EFH29433.1| tRNA adenylyltransferase [Lactobacillus jensenii JV-V16] Length = 396 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 174/398 (43%), Gaps = 16/398 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ L + ++ VGG+VRD L+N + D+DIAT+ P+ V ++F ++ I T Sbjct: 13 ALPVVQTLTQAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPEEVKQLFERS----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ D R V F ++ + D RRDFTINAL D+ Sbjct: 69 IQHGTVTVLYNDDSYEITTFRTESGYQDYRRPDHVEFVQNLEEDLKRRDFTINALAMDEY 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G + D GL+DL IK +GD R ED LR++R RF + + +++ A Sbjct: 129 GNIHDLFNGLDDLNQGLIKAVGDPEKRFNEDALRMMRAVRFMSQL-KFSLEEKTRQAICD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+ + +A + + +E+ D + +QLS Sbjct: 188 HHELLSKISVERIREEFVKMCVGPHARSAFQVFLDTQLSEEV-PDFRGKK-EQLSVFPSL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + +L+ + + I + + + ++ + S + Sbjct: 246 TFSPSTEASVWAIIAILLKLPN-EQIPAFMRDWKNSNQMARNVEEIVFFFDLLSDHSPSD 304 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + +L G +++ + L ++ ++ + + G +++ Sbjct: 305 YE--LFLAGQDTVMSACDVARILG----QPVNSEAMIDRYVALPIKNNKELVIDGSTLIE 358 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +GI PG +G +L + ++ +E + + + + Sbjct: 359 WGIKPGPSLGEMLAKITEAVVDGKVANEEEAIKNFIAE 396 >gi|149011794|ref|ZP_01832990.1| predicted S-transferase [Streptococcus pneumoniae SP19-BS75] gi|147764225|gb|EDK71157.1| predicted S-transferase [Streptococcus pneumoniae SP19-BS75] Length = 394 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 186/399 (46%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + I + + K + GD ++K Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA----QGKEVNLQAITKKYQSLTIHDKKEIQINGDILIK 353 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|241761961|ref|ZP_04760046.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373641|gb|EER63213.1| Polynucleotide adenylyltransferase region [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 406 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 141/400 (35%), Positives = 222/400 (55%), Gaps = 20/400 (5%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + KW H L +++ L VGG+VRD+L+ L V DID AT P++ M + Sbjct: 5 LPDQKWQHQEGLSDLIKALGGDSM-IRFVGGSVRDTLLGLPVNDIDCATRHHPEKTMELI 63 Query: 64 SKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 +K IPT I +GTI + K +IT+LR D+ TDGR+A + ++ +W+ D+ RRDF Sbjct: 64 RSAGFKAIPTGIQHGTITALLPTKSPVEITSLRRDVSTDGRHATIAYSDNWEDDAQRRDF 123 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINALYA+ + G V DY GGL DL+ +++FIG+ RI ED+LRILRFFRFFA +G+ N Sbjct: 124 TINALYAEAESGLVHDYFGGLADLKAHSVRFIGNPETRIAEDHLRILRFFRFFARFGQNN 183 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A IK L LS ERI SE+ K+L +PL I M GIFK I ++ Sbjct: 184 PDPEALAACIKRANDLMALSRERIASEVLKILALPDPLAVISLMIKSGIFKPILPEITAD 243 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 S+ L +++E E+++ ++LLR L+ + + S+A++ +E + +LI+ Sbjct: 244 SILPLQRLVERERLYHISGNALLRLAALLP-EGAEMARSVAQRLRFSKEQKKYLIALLTA 302 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + L + G + IA+ L+ +D + ++ + +W++P Sbjct: 303 EEEKPL-------SLAWAIGKEEAIARFL---------LSDRDEATVNSAIALLKNWERP 346 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 +FPL G D++ G+P G V IL + ++ W+ ++F S Sbjct: 347 VFPLKGGDLIAKGLPAGPLVATILQNIQKAWVEAAFPNSD 386 >gi|167765977|ref|ZP_02438030.1| hypothetical protein CLOSS21_00468 [Clostridium sp. SS2/1] gi|167712334|gb|EDS22913.1| hypothetical protein CLOSS21_00468 [Clostridium sp. SS2/1] gi|291558771|emb|CBL37571.1| uncharacterized domain HDIG [butyrate-producing bacterium SSC/2] Length = 448 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 100/441 (22%), Positives = 181/441 (41%), Gaps = 51/441 (11%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ L + ++ IVGG VRDS++ + D DI T+ P V IF T + T Sbjct: 9 AAKVIQTLEQHGFEAYIVGGCVRDSILGRTPGDWDITTSASPQEVKEIFDHT----VDTG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R D D R +V FT+ + D LRRDFTINA+ + Sbjct: 65 IEHGTVTVLMNHEPYEVTTYRVDGKYEDHRRPKEVHFTKSLREDLLRRDFTINAMAYNDS 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID G+ DL+N+ I+ +G+A R ED LRILR RF A G + I+ A Sbjct: 125 EGIIDMYDGMTDLKNQIIRCVGEAKKRFDEDALRILRALRFQAQLGFQ-IEEKTEEAIKN 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S+ERI E+ KL+ + +P +V+ Y G+ K IF + + + Sbjct: 184 QAKFLKDISAERIQVELEKLITSAHPEV-LVNAYKLGVTKIIFPEFDIMMETPQNNPHHK 242 Query: 253 EQVFEWKIDSL--------LRFIVLISWQDKKS---------------------ILSMAK 283 V I+++ R+ +L+ K + + + Sbjct: 243 YNVGIHTIEAMKQIKAEHIYRWTMLLHDVGKPTARVEGPDKDHFKMHPVIGEEMARKILR 302 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + + + + + + KK + ++ + + +++ Q Sbjct: 303 RLKFDNQTIKQVTTLVRWHDRRFASIEEVNKKTVRRWVSQLTPELFTRLMEVQKADISAQ 362 Query: 344 D--------------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 +++ + + G D++ G+P GK++G IL Sbjct: 363 SDYQRDKKEQVLQETKKLFEEIIEEKNCLSIKELKINGKDLMDMGVPQGKEIGQILSWLL 422 Query: 390 QEWINSSFQLSQEDLHHLLRK 410 + + E L + + Sbjct: 423 DQVLEDPQLNECETLTRMAEE 443 >gi|170594816|ref|XP_001902140.1| polyA polymerase family protein [Brugia malayi] gi|158590356|gb|EDP29010.1| polyA polymerase family protein [Brugia malayi] Length = 480 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 125/434 (28%), Positives = 202/434 (46%), Gaps = 35/434 (8%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + Q K +LI + L K + + + GGAVRD LM + DID AT P+++ Sbjct: 38 IDTPQFKALFTPELIKLNDLFKKNDFQLRMAGGAVRDLLMGIKPCDIDFATNATPEKMKE 97 Query: 62 IFSKTRYKVI-PTSISYGTIK-IICRKKYFDITTLR------------SDLITDGRYAKV 107 +F + +++ +GTI I K+ F+ITTLR D + DGR AK+ Sbjct: 98 LFLREGIRMLNKNGEEHGTITCRIDDKENFEITTLRHVNFCYIIHFEQIDTVCDGRRAKI 157 Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 FT +W+ D+ RRD T+N+L+ D G VIDY GG+ DL R I F+GDA+ RI EDYLRI Sbjct: 158 EFTTNWQLDANRRDLTVNSLFLDLDGTVIDYFGGIKDLEERKIVFVGDANQRIQEDYLRI 217 Query: 168 LRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI-VH 224 LR+FRF+ + D L A I + GLK +S ERIW E+ K+ + + Sbjct: 218 LRYFRFYGRLAIDGEMHDKATLDAIISNRNGLKDISGERIWMELKKICVGRLGGAVLTTM 277 Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + + + L + ++ + + + KI+++ L + + I K Sbjct: 278 LKRCNLASLLGLPEKADTV----YFCKLHKRYYPKIEAMTLLSSLFTEMGQIEIFHRRCK 333 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIK-------KLFYLYGDKVMIAKLKIFLALHY 337 S + I + SI K +L K+ ++ K+ Y Sbjct: 334 LSYAEKTLTEFIVEHRDEAEKNVNSILFFKNILLIEERLHKFTRKKIQTSREKVIELAKY 393 Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + + +++++ W+ P FP+ G D++ I PG V IL + Q WI S + Sbjct: 394 AMVNDE-------LINELSIWEMPTFPIGGIDLMHNNISPGPHVKQILDYLFQIWIESEW 446 Query: 398 QLSQEDLHHLLRKL 411 +S+E+L + + Sbjct: 447 MISKEELLKHINDI 460 >gi|90961683|ref|YP_535599.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius UCC118] gi|122449084|sp|Q1WU19|CCA_LACS1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|90820877|gb|ABD99516.1| Poly(A) polymerase / tRNA nucleotidyltransferase [Lactobacillus salivarius UCC118] Length = 404 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 106/407 (26%), Positives = 193/407 (47%), Gaps = 22/407 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + + ++ VGG+VRD+L+ L + D+DIA++ P+ + +IFSKT + T Sbjct: 13 ALPILEKIREAGFEAYFVGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFSKT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ ++ITT R++ D R KV F R + D RRD TINAL D + Sbjct: 69 VEHGTVMVLDHGTGYEITTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMDDK 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID GL DL+N I+ +G+ R ED LR++R RF + + ++ D A K Sbjct: 129 GKIIDLFDGLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQL-DFKVELDTFNAIKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL KNP + + ++K + D+ +++ Sbjct: 188 NSHLLEKIAIERIHVEWVKLLLGKNPKQGLQEFLDTELYKYC-----PLFADKYAELKSI 242 Query: 253 EQVFEWKIDSLLRFIVLISW---QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + ++K+++ L+S I ++ + + I ++I+ C QK Sbjct: 243 LEFSDFKLNTEEECWTLLSDVFKLKDTDISNLLRSWKSSNNIIKYVIAASLC--VQKIKD 300 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + +Y G ++++ +I + D + + + + G D Sbjct: 301 SKLDIETYYQNGIEIILTANQIAKIRGFG----MDDNELKNNYDKLPIKSRKEMKINGKD 356 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 +V + G+ PGK +G IL ++E + + +E L +KL+ Sbjct: 357 LVQEAGVKPGKIMGEILNKLEKEIVFGNIINDKEILIENAKKLLEEK 403 >gi|189220183|ref|YP_001940823.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum infernorum V4] gi|189187041|gb|ACD84226.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum infernorum V4] Length = 443 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 103/429 (24%), Positives = 178/429 (41%), Gaps = 39/429 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I I+ +L K + GG VRD L+ DIDIAT+ PD+V +F + +I Sbjct: 3 EEAIRIVRILQKAGFTAFFAGGCVRDILLKKEPHDIDIATSATPDQVQNLFKEKASGLI- 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQ 131 S+G I++ +F++ T R+D+ + G R+ K V K D+LRRDFTIN ++ D Sbjct: 62 -GKSFGVIRVKSGAHFFEVATFRTDIGSQGGRWPKAVQFSTPKEDALRRDFTINGIFYDP 120 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +IDYVGG D+ + I+ IGD R ED+LR+LR RF G +I+ A Sbjct: 121 LTGTIIDYVGGSEDIEKKRIRAIGDPKIRFEEDHLRLLRAIRFAVRLG-FSIEEKTWEAI 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQV 249 + + +S ERI E++K+ +P + + G+ + I ++ + ++Q + Sbjct: 180 QSSAHKITQISPERIREELDKIFTGPDPAKGLELLDQSGLLRFILPEISNLHGVEQPKEF 239 Query: 250 IEAEQVFEW---------KIDSLLRFIVLISWQDK----------------------KSI 278 VF L L K + Sbjct: 240 HPEGDVFNHVLLLLSHLHNPSLELALAALFHDVGKAVTFSRDNTGQIHFYGHETVGAQIT 299 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + + ++I ++ + + K + + L L +L++ + Sbjct: 300 EKIMTRLRYSKDIIKKVVECVRNHMSFKDVPRMKKSTLKKLILKPTFPIELELHRIDCLS 359 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFP--LTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + + L + + + P +TG D++ G+ PGKKVG IL ++ + Sbjct: 360 SHGNLSIYNFLNKIKEQYSAESLSPPKLITGFDLLALGLKPGKKVGEILELIREAQLEDK 419 Query: 397 FQLSQEDLH 405 E L Sbjct: 420 ISSRAEALL 428 >gi|306824855|ref|ZP_07458199.1| polyA polymerase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433066|gb|EFM36038.1| polyA polymerase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 399 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 101/398 (25%), Positives = 180/398 (45%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IF +T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFPRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + VA Sbjct: 129 GEIIDLFDGLKDLENQVLRAVGIASERFNEDALRIMRGFRFQASLG-FELEPETFVAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S +L+++ Sbjct: 188 LTPLLEKISVERTFVEFDKLLLAPFWRVGLSSMIESRAYDYL-PDM-AGSQGKLNRLFVL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + K K + R+ + ++ + Sbjct: 246 ETDFTFE-SSEQAWAALLWALEIKDAQPFLKAWKTSRQFAKQVQDLLTILVLREEGEL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + ++ + A S IH KK + G + + Sbjct: 303 SKRDCYRFDLDSLLQAESLRQA---QGKEVNPQAITETYQSLTIHDKKEIQINGGVLIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++ +H LR+ Sbjct: 360 YGYQPGPDLGEILTEIEFAIVDGELENDRQAIHAYLRE 397 >gi|163742637|ref|ZP_02150023.1| polyA polymerase family protein [Phaeobacter gallaeciensis 2.10] gi|161384222|gb|EDQ08605.1| polyA polymerase family protein [Phaeobacter gallaeciensis 2.10] Length = 384 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 125/409 (30%), Positives = 195/409 (47%), Gaps = 28/409 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ +Q KW D + ++ +L KG + VGG VR++L+ + V D+D++T + P RVM Sbjct: 1 MTHIQAKWLEDPAVQHVCDVLTKGGAEVYFVGGCVRNALLGVPVSDLDLSTNVPPQRVMA 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + K IPT I +GT+ ++ R ++ITT R D++TDGR A V F+ + D+ RRD Sbjct: 61 LAEEAGIKAIPTGIDHGTVTLVYRGTPYEITTFRRDVVTDGRRAVVAFSDRIEEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--E 179 FT+NALYA G ++D + GL DLR R ++FIG + RI EDYLR LR+FRF + YG + Sbjct: 121 FTMNALYARPDGGLVDPLNGLPDLRARLVRFIGSSAQRIREDYLRSLRYFRFHSWYGNPD 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D D L A + G+ LS ER+ SE+ KLL A +P AI M G+ I Sbjct: 181 AGFDPDALSAIAENLDGIGSLSRERVGSEVLKLLAAPDPAPAIAVMRQVGLLSLILPGSD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + +L L + + L R L + L + + Sbjct: 241 DRALGPLVHLEG-----GRPAEPLCRLAALGGDAS-------WEALRLSKTQAADVRLLR 288 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 +L Y +G + + AL +T + ++I Sbjct: 289 AA-----AEGTDGPAELAYHHGVSTARNVMLLRSALLEMPITP-------DLEAEITKGA 336 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +FPL+ D++ G +G L +++WI S F L ++ L L Sbjct: 337 GAVFPLSAKDLMPD--LQGAALGAALKSLQKDWIRSGFMLDRDALLKRL 383 >gi|148992554|ref|ZP_01822222.1| polyA polymerase family protein [Streptococcus pneumoniae SP9-BS68] gi|168488782|ref|ZP_02712981.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae SP195] gi|237650239|ref|ZP_04524491.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae CCRI 1974] gi|237820879|ref|ZP_04596724.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae CCRI 1974M2] gi|147928571|gb|EDK79585.1| polyA polymerase family protein [Streptococcus pneumoniae SP9-BS68] gi|183572650|gb|EDT93178.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Streptococcus pneumoniae SP195] Length = 394 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 186/399 (46%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + I + + K + GD ++K Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA----QGKEVNLQAITEKYQSLTIHDKKEIQINGDILIK 353 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 354 EYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|296284409|ref|ZP_06862407.1| tRNA nucleotidyltransferase [Citromicrobium bathyomarinum JL354] Length = 390 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 128/413 (30%), Positives = 200/413 (48%), Gaps = 27/413 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + Q +W +DL ++ + G + VGGAVRD+L+ V+DID AT + P++V+ Sbjct: 1 MPQAQWTQRADLAALVEAIGPGNIR--WVGGAVRDTLLGAPVKDIDAATPLRPEQVVEAC 58 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + +PT I +GTI ++ ++TTLR D+ TDGR A V F DW+ D+ RRDFT Sbjct: 59 KAAGIRTVPTGIDHGTITVLTDGGPVEVTTLREDVSTDGRRATVAFASDWREDAARRDFT 118 Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INALYAD ++ DY GGL DL R ++FIGDA RI ED+LRILR++RF A +G + Sbjct: 119 INALYADPATLELFDYFGGLQDLEARRVRFIGDARQRIREDHLRILRYYRFQARFG-AAL 177 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + A + LK LS ER+ E+ +L +P I M+ G+ I + Sbjct: 178 DGEAEEACAELAPMLKGLSRERVAMELTAILALPDPAPTIARMHEHGVLPVILPEAGAEQ 237 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + L +++ E + D ++R L+ D + ++A + L R+ R L+ C Sbjct: 238 IAALQRLVATEAACDTAPDPIVRLSALLP-ADGSTAETVAARLRLSRKHRDLLV----CL 292 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 ++ K L Y G +L + + I W P Sbjct: 293 AAREASDAEAPKALAYTQGSACAAGRLLLGGSDPR----------------VIAGWDIPQ 336 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 PL G ++V G+ G +V L + W+ F + + LL +++ S Sbjct: 337 LPLKGGEIVARGLS-GAEVSKTLRAVEARWVAEDFP-DRARVLTLLDEVLQSR 387 >gi|295703505|ref|YP_003596580.1| tRNA nucleotidyltransferase [Bacillus megaterium DSM 319] gi|294801164|gb|ADF38230.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus megaterium DSM 319] Length = 397 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 189/399 (47%), Gaps = 24/399 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L ++ VGGAVRD ++N ++ DIDIAT+ P++VM +F KT I I + Sbjct: 11 VIEKLETAGYEAYFVGGAVRDLILNRTIGDIDIATSARPEQVMELFPKT----IHVGIEH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT RS+ D R + V F D RRDFTINA+ + +G++ Sbjct: 67 GTVVVVHENETYEVTTFRSEGEYDDFRRPSSVTFISSLIEDLQRRDFTINAMAMNAKGEI 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G DLRN+ I+ +G+A R ED LR++R RF + D A + + Sbjct: 127 IDPFNGREDLRNQLIRTVGNAKERFHEDALRMMRAVRFVSQLAFSLSD-QTKRAIQQYGE 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L+ +S ERI E K+L K P A+ + + +++ + ++++D Q + Sbjct: 186 LLRHVSIERITVEFEKMLSGKRPSLALALVADTELYRYL----PQLNVD--PQKFRSVCA 239 Query: 256 FEWKIDSLL--RFIVLISWQDKKSILSMAKKFSLPREIRYF--LISFFNCNFNQKTLSIP 311 +W + + + +L+ D + + K + L + L S + + S Sbjct: 240 HDWMMLQRVSESWTLLVHLLDIQDKQAFFKSWKLSNKQIKDIQLQSIGLRDVLENGWS-- 297 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K++ Y G++ ++ +I L N + + +L + S++ + G D++ Sbjct: 298 --KRIMYTIGEQASVSVNRILQLLRSN--EYMNEHELLYIYSELPIHSLKDLDINGQDLL 353 Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G G V +L +++ + + ++ + ++ Sbjct: 354 VWTGKKGGPWVSQLLKEIEEKVLYNELMNTKSSIRKWVQ 392 >gi|255656450|ref|ZP_05401859.1| putative poly(A) polymerase [Clostridium difficile QCD-23m63] gi|296450104|ref|ZP_06891866.1| polyA polymerase [Clostridium difficile NAP08] gi|296878485|ref|ZP_06902491.1| polyA polymerase [Clostridium difficile NAP07] gi|296261112|gb|EFH07945.1| polyA polymerase [Clostridium difficile NAP08] gi|296430569|gb|EFH16410.1| polyA polymerase [Clostridium difficile NAP07] Length = 445 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 107/432 (24%), Positives = 181/432 (41%), Gaps = 50/432 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F KT IPT I + Sbjct: 13 IIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQH 68 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ + + + Sbjct: 69 GTVTVMVEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSETGL 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G D++N+ I+ +G+ R ED LR+LR RF A NID + K Sbjct: 129 VDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLN-FNIDEGTEQSIHKKSD 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 +K +S ERI +E NK+L + + + + + G+ K I ++ E+ V Sbjct: 188 LIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPYHIYDV 245 Query: 256 FEWKIDSL--------LRFIVLISWQDK----------------------KSILSMAKKF 285 + + + L+ +L K K + K+ Sbjct: 246 QKHTLIATEVIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKKILKRL 305 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNNLTHQD 344 ++ + + IKKL D ++ +K+ A Sbjct: 306 KYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVELFEDLIKVNWADTLAKNPKYA 365 Query: 345 TCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 IL ++ +K + + G D++ GI PGK +G+IL + + IN Sbjct: 366 KQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGHILNNMLEIVIN 425 Query: 395 SSFQLSQEDLHH 406 + +E L Sbjct: 426 NPELNEKEILKE 437 >gi|94990240|ref|YP_598340.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10270] gi|166233883|sp|Q1JHE0|CCA_STRPD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|94543748|gb|ABF33796.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS10270] Length = 402 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 104/404 (25%), Positives = 188/404 (46%), Gaps = 18/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLGRPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+ + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEATTFEAMRS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER ++E +KLL A + I M + + L QE L+ L ++ Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + ++ ++ +D KS L K + + + ++ ++ S Sbjct: 248 DNFTFSDHHQAWAYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSFE 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG K+ + L D I + ++ K L G ++ Sbjct: 305 KLD--IYQYGKKMA----SLVEDLRKAQSLSVDMDHINTLDQALVIHDKHDIVLNGSHLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K +G+ PG ++G +L + + + +R+ +A+ Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELAT 402 >gi|161507464|ref|YP_001577418.1| tRNA CCA-pyrophosphorylase [Lactobacillus helveticus DPC 4571] gi|172048281|sp|A8YV39|CCA_LACH4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|160348453|gb|ABX27127.1| tRNA nucleotidyltransferase [Lactobacillus helveticus DPC 4571] gi|323466652|gb|ADX70339.1| tRNA nucleotidyltransferase [Lactobacillus helveticus H10] Length = 399 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 183/399 (45%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T Sbjct: 14 AMPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 70 IRHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLH 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A Sbjct: 130 GQIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK +S ERI E K+ + A + + +++ + L Q+ ++ Sbjct: 189 NHELLKKISVERIREEFVKMGIGPHSRQAFQIFLDTQLSEDVPDFAGKKELLQIYPQLQF 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + SL+ ++ + +D + K + E +I FF+ + Sbjct: 249 SPTLETSLWSLIIILLKLPDEDISKFMRDWKNSNAMTEQVERIIKFFDLISDHTPNDYE- 307 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + G++ +I + + L + + L+ I K + G ++K Sbjct: 308 ----LFQAGERTIINTIDVAHIL---GQPVASEALVDRYLALPIK-KPAELAIDGRFLIK 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +G+ PG ++G+ L ++ ++S + S + + L L Sbjct: 360 HGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398 >gi|126724604|ref|ZP_01740447.1| polyA polymerase family protein [Rhodobacterales bacterium HTCC2150] gi|126705768|gb|EBA04858.1| polyA polymerase family protein [Rhodobacterales bacterium HTCC2150] Length = 394 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 134/408 (32%), Positives = 200/408 (49%), Gaps = 29/408 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 VQ W D I SLL ++ VGG VR++L++ V D+DIAT P++V+ + Sbjct: 8 VQGDWLSDPAAQKIFSLLLDAGYQAYAVGGCVRNALLDCPVNDVDIATNARPEQVVALAK 67 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K IPT I +GT+ ++ F++TT R D+ TDGR A V F + D+ RRDFT+ Sbjct: 68 AAGVKSIPTGIDHGTVTLLKNSTPFEVTTYRRDVETDGRRAVVAFADTIEEDARRRDFTM 127 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA G ++D +GGL D +R + FI +A R+ EDYLRILRFFRF A YG+ + Sbjct: 128 NALYASADGTLVDPLGGLQDCMDRRVVFIENAEARVREDYLRILRFFRFHAWYGDPAAGL 187 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D DGL A + +GL LS ER+ SEI KLL A +P A+ M GI + S Sbjct: 188 DPDGLAACAELAQGLDGLSRERVTSEILKLLAAPDPAPAVAVMDQAGILTRVLPGATAKS 247 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + + + ++ R L D S F L R+ + + Sbjct: 248 LAPLVHLED-----GLEPSAIRRLATL--GGDAIST------FRLSRKEERAIKERRDAL 294 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 N +L+ K + V + + IF +T +++I + + Sbjct: 295 ENMTSLNSVAQLK-GFDVARDVALMRAAIF-----------ETPMGENWINEIENAARQT 342 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++ ++ G +G L K+ W++S F LS++DL LL + Sbjct: 343 FPVSAANLPSE--LQGAAIGKALAQLKKAWVDSGFNLSKQDLLRLLDE 388 >gi|87199043|ref|YP_496300.1| polynucleotide adenylyltransferase region [Novosphingobium aromaticivorans DSM 12444] gi|87134724|gb|ABD25466.1| Polynucleotide adenylyltransferase region [Novosphingobium aromaticivorans DSM 12444] Length = 400 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 129/397 (32%), Positives = 196/397 (49%), Gaps = 24/397 (6%) Query: 4 IVQHKWFHDSDLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 + + W DL +++ L+ + VGG VRD+++ L +DID+ATT+ PD Sbjct: 5 LPKADWTARDDLAALVAALDPDSQGNCRWVGGVVRDTILGLPAKDIDMATTLPPDETAAR 64 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 S K +PT I++GT+ + +ITTLR D+ TDGR+A V F+ DW+ D+ RRDF Sbjct: 65 LSTAGIKSVPTGIAHGTVTAVLPGGPVEITTLRRDVSTDGRHATVSFSTDWRDDAARRDF 124 Query: 123 TINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINALYAD + +V DY GGL DL R ++FIGDA RI EDYLRILR+FRF A +G Sbjct: 125 TINALYADPRTLEVFDYHGGLADLAARRVRFIGDARQRIREDYLRILRYFRFQARFGSIP 184 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D++ A + GLK LS ER+ E+ LL +P + M G+ ++ + Sbjct: 185 ADTEAESAVSELAAGLKGLSRERVGWELMNLLGLPDPAPTMRRMAELGVLAQVLPETAAD 244 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 LD L +I EQ ++ R L+ D+ +A + L R L + Sbjct: 245 GLDALEALIGNEQSARADAVAIRRLAALLP-ADRHLAELVAARLRLSAAQRKRLAT---- 299 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + + + L Y G + +L I + ++ + W+ P Sbjct: 300 -VAAPSGADGDARALAYRIGIEEARDRLLIAG----------------RPVAALDGWQAP 342 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 PL G ++V G+ G +V L + +WI+ F Sbjct: 343 ALPLKGGEIVARGVTAGPEVARTLRAVEDQWISEGFP 379 >gi|323339898|ref|ZP_08080167.1| poly A polymerase [Lactobacillus ruminis ATCC 25644] gi|323092771|gb|EFZ35374.1| poly A polymerase [Lactobacillus ruminis ATCC 25644] Length = 400 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 104/399 (26%), Positives = 183/399 (45%), Gaps = 15/399 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D I+ + + ++ VGG+VRD+L+ L + D+DIAT+ P + +IF KT + T Sbjct: 12 DAKPIIETIKQAGFEAYFVGGSVRDTLLGLPIHDVDIATSAYPREIKKIFKKT----VDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R++ D R V F R + D RRD TINA D+ Sbjct: 68 GIQHGTVMVLDHGEGYEITTFRTESTYQDFRRPDHVTFVRSLEEDLKRRDLTINAFAMDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL+N+ +K +GDAH R ED LR++R RF + + I+ A Sbjct: 128 TGRVIDMFDGLSDLQNKRLKAVGDAHERFHEDALRMMRTIRFASQL-DFKIEEKTFQALG 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L+ ++ ERI E KLL KNP + Y +++ + + +++ + Sbjct: 187 ENAALLEKIAVERIHVEWIKLLMGKNPGCGLSAFYETKLYQHC--PMFSKYGETFNELSK 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + + +I++ + D K + + + E + + Sbjct: 245 RKLEIQDEIEAWTLLSYCLK-MDGKDSAKLLRAWKSSNET--IAQTEKAVAALESIADRR 301 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + Y G+ + L + +T + I + I KK L GD + Sbjct: 302 VTRFTLYNAGETGLKTALAVA---KQMEITVDEDKLIHDYRTLPIKSKKDLKANGGDLIK 358 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + GI PG K+G IL + ++E + + + L L ++ Sbjct: 359 EAGIKPGPKMGEILDYLEEEVLFGRVENEKTSLLELAKQ 397 >gi|209966674|ref|YP_002299589.1| polyA polymerase family protein [Rhodospirillum centenum SW] gi|209960140|gb|ACJ00777.1| polyA polymerase family protein [Rhodospirillum centenum SW] Length = 424 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 124/402 (30%), Positives = 192/402 (47%), Gaps = 12/402 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L + ++ VGG VRD+++ D+DIAT + PD VMR + +V+PT I + Sbjct: 21 VLQALMRTGQEARFVGGCVRDAVLGQEADDVDIATPLPPDEVMRRLKQDGIRVVPTGIRH 80 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GT+ I F+ITTLR D+ T GR+A+V FT DW D+ RRDFT NAL +G + D Sbjct: 81 GTVTAIRDGHAFEITTLRRDVETYGRHARVEFTDDWLEDARRRDFTFNALSLSSEGDLYD 140 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL DL ++F+GDA RI ED LRILR+FRF A +G+ +D D + A L Sbjct: 141 PFGGLADLSAGRVRFVGDAEARIREDVLRILRYFRFHARFGKGGLDDDAIAACAAQAPLL 200 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 LS ER+ E+ +L + M GI + + Q +D L+ + E + Sbjct: 201 PTLSGERVREELLRLFATDRAVETWRLMLERGIIQHLLP--QATRIDTLAALDRLEWMVG 258 Query: 258 WKIDSLLRFIVLISW---QDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEI 313 + L + L+ + + + L++A + L R L+ L + Sbjct: 259 -EAGPLTQLAALLPRGGEEGRAAALAVADRMRLSNAQRDRLLVLCAPPLAVDAGLDVRGR 317 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 ++ G ++ L + A IL+ L++ W+ FPL G D V Sbjct: 318 RRALQTVGPELFRDLLLLDTA-----TRGIPAFEILESLAEAAAWRVIPFPLKGQDAVDR 372 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G+P G VG +L + W ++ +ED L + +A+ Sbjct: 373 GVPQGPAVGRLLEAVEGWWAGRDYRPGREDCLAELERRLAAP 414 >gi|294498154|ref|YP_003561854.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus megaterium QM B1551] gi|294348091|gb|ADE68420.1| CCA-adding enzyme (tRNA nucleotidyltransferase) [Bacillus megaterium QM B1551] Length = 397 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 99/399 (24%), Positives = 189/399 (47%), Gaps = 24/399 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L ++ VGGAVRD ++N ++ DIDIAT+ P++VM +F KT I I + Sbjct: 11 IIEKLETAGYEAYFVGGAVRDLILNRTIGDIDIATSARPEQVMELFPKT----IHVGIEH 66 Query: 78 GTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT RS+ D R + V F D RRDFTINA+ + +G++ Sbjct: 67 GTVVVVHENETYEVTTFRSEGEYDDFRRPSSVTFISSLIEDLQRRDFTINAMAMNAKGEI 126 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G DLRN+ I+ +G+A R ED LR++R RF + D A + + Sbjct: 127 IDPFNGREDLRNQLIRTVGNAKERFHEDALRMMRAVRFVSQLAFSLSD-QTKRAIQQYGE 185 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L+ +S ERI E K+L K P A+ + + +++ + ++++D Q + Sbjct: 186 LLRHVSIERITVEFEKMLSGKRPSLALALVADTELYRYL----PQLNVD--PQKFRSVCA 239 Query: 256 FEWKIDSLL--RFIVLISWQDKKSILSMAKKFSLPREIRYF--LISFFNCNFNQKTLSIP 311 +W + + + +L+ D + + K + L + L S + + S Sbjct: 240 HDWMMLQRVSESWTLLVHLLDIQDKQAFFKSWKLSNKQIKDIQLQSIGLRDVLENGWS-- 297 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K++ Y G++ ++ +I L N + + +L + S++ + G D++ Sbjct: 298 --KRIMYTIGEQASVSVNRILQLLRSN--EYMNEHELLYIYSELPIHSLKDLDINGQDLL 353 Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G G V +L +++ + + ++ + ++ Sbjct: 354 VWTGKKGGPWVSQLLKEIEEKVLYNELMNTKSSIRKWVQ 392 >gi|300214483|gb|ADJ78899.1| CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus salivarius CECT 5713] Length = 404 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 106/407 (26%), Positives = 193/407 (47%), Gaps = 22/407 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + + ++ VGG+VRD+L+ L + D+DIA++ P+ + +IFSKT + T Sbjct: 13 ALPILEKIREAGFEAYFVGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFSKT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ ++ITT R++ D R KV F R + D RRD TINAL D + Sbjct: 69 VEHGTVMVLDHGTGYEITTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMDDK 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID GL DL+N I+ +G+ R ED LR++R RF + + ++ D A K Sbjct: 129 GKIIDLFDGLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQL-DFKVELDTFNAIKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL KNP + + ++K + D+ +++ Sbjct: 188 NSHLLEKIAIERIHVEWVKLLLGKNPKQGLQEFLDTELYKYC-----PLFADKYAELKSI 242 Query: 253 EQVFEWKIDSLLRFIVLISW---QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + ++K+++ L+S I ++ + + I ++I+ C QK Sbjct: 243 LEFSDFKLNTEEECWTLLSDVFKLKDTDISNLLRSWKSSNNIIKYVIAASLC--VQKIKD 300 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + +Y G ++++ +I + D + + + + G D Sbjct: 301 SKLDIETYYQNGIEIILTANQIAKIRGFG----MDDNELKINYDKLPIKSRKEMKINGKD 356 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 +V + G+ PGK +G IL ++E + + +E L +KL+ Sbjct: 357 LVQEAGVKPGKIMGEILNKLEKEIVFGNIINDKEILIENAKKLLEEK 403 >gi|240138023|ref|YP_002962495.1| putative nucleotidyl transferase/polymerase [Methylobacterium extorquens AM1] gi|240007992|gb|ACS39218.1| putative nucleotidyl transferase/polymerase [Methylobacterium extorquens AM1] Length = 424 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 127/393 (32%), Positives = 195/393 (49%), Gaps = 13/393 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K + T I +G Sbjct: 32 LAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARTAGIKAVGTGIEHG 91 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ ++ + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D +G++ D Sbjct: 92 TVTLVVGGEPHEVTTLREDVETDGRHAVVRFGRDFARDAERRDFTINALSLDAEGRLHDT 151 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL ASI A+ L Sbjct: 152 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAASIAARDSLD 211 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A ++A+ + G+ I V E+ +LS+ E Sbjct: 212 RLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGELG--RLSRCATTE----L 265 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF---FNCNFNQKTLSIPEIKK 315 +D+ RF L + + + + L R L + ++ + + Sbjct: 266 GVDATARFAAL-AVRTSEDADRLQASLRLSRAEHARLTGYAIALAALHDRPVIEADAVPA 324 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L YG + + +AL + +P+ P+TG D+V G+ Sbjct: 325 LVATYGAGPLRE---LLIALDGEPRPRVTPAARAMLDRMEAAGTRPVLPVTGADLVARGV 381 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PG+ VG L + W+ S E L+ Sbjct: 382 APGRAVGAGLRAARDLWLASGCPDDAEARERLI 414 >gi|312135461|ref|YP_004002799.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor owensensis OL] gi|311775512|gb|ADQ04999.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor owensensis OL] Length = 394 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 105/397 (26%), Positives = 194/397 (48%), Gaps = 18/397 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I ++ LN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F KT IP Sbjct: 6 DEPIKVIRTLNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDARPEDVIHLFEKT----IP 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 62 TGIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +IDY GG+ DL+++ ++ +G+ + R ED LRILR RF I+++ A Sbjct: 122 DEGLIDYFGGIEDLKSKIVRCVGNPNERFFEDALRILRCIRFATQL-SFVIENETFEALK 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K LK +S ERI E++K LE+KN + +Y G+ I + +I L + + Sbjct: 181 SLKDLLKKISKERINIELSKTLESKNSSYGLELLYESGVGSIIIPEFSQIYL----YLSQ 236 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + F + +D + + + R R ++ CN+ + + Sbjct: 237 VGFDFIPTKFKVPAFFACL--KDGLLVEKLMRDLKFDR--RNISLAIKLCNYLKMHYNAE 292 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 E+ K + + ++ + + +++ N+ +T IL+ + +I K + G D++ Sbjct: 293 ELIKRIF-FEEEENVEDIIFTMSILKNDTKITETFDILKKQNRLIRKKDVK--INGKDLL 349 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 K G+ G+++G L + + + + +++++ + + Sbjct: 350 KMGLK-GEEIGKTLNLIYEYILKNPEKNNKDEILNYV 385 >gi|268554488|ref|XP_002635231.1| Hypothetical protein CBG11474 [Caenorhabditis briggsae] Length = 462 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 122/413 (29%), Positives = 205/413 (49%), Gaps = 19/413 (4%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + L+ + L K + I GGAVRD LMN+ D+D A+T P ++ +F + Sbjct: 44 DFRALFTPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATPTQMKEMFEQ 103 Query: 66 TRYKVIPT-SISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 +++ +GTI K+ F+ITTLR D++ DGR AKV +T DW+ D+ RRD T Sbjct: 104 ENIRMLHKRGEEHGTITCRIDEKENFEITTLRIDVVCDGRRAKVEYTTDWQLDANRRDLT 163 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNI 182 IN+L+ D G V+DY GG+ D+ R + F+GDA RI EDYLRILR+FRFF + Sbjct: 164 INSLFLDLHGNVVDYFGGIGDIETRRVAFVGDARQRIQEDYLRILRYFRFFGRISNSPDH 223 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 ++D + A I K G+ +S+ERIW+E+ K++ + + + M ++ +E + Sbjct: 224 EADTIQAIIDNKDGMSGISAERIWTELKKIVIGRMADDVVKAMIEQCELQKYLGLPEECN 283 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY---FLISFF 299 + + Q+ + F ++ + L + K I K L + R+ F++ Sbjct: 284 ITRFRQIFKR---FPKSVEPMTMVASLC--EGVKQIAQFHKITKLSNDERFLGEFILRER 338 Query: 300 NC---NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 N N I + L G + + +L++ L ++ D + + Sbjct: 339 EAALENMNNDDWWIDRMVDLEVRPGHENLPDRLRLRLVQLARSVLADDER-----IEMLQ 393 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + P FP+TG D+++ G+ G V N+L++ + W S F ++E+L R Sbjct: 394 KFTPPQFPITGRDLMEAGVRKGPGVKNVLIYLYELWKTSRFTSTKEELLERAR 446 >gi|114328297|ref|YP_745454.1| poly(A) polymerase [Granulibacter bethesdensis CGDNIH1] gi|114316471|gb|ABI62531.1| poly(A) polymerase [Granulibacter bethesdensis CGDNIH1] Length = 413 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 117/406 (28%), Positives = 200/406 (49%), Gaps = 20/406 (4%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 W D L ++L++L ++ VGG VRD+L V DID+A + P++ ++ + Sbjct: 11 SWLDDPALQDVLAVLP----QARPVGGCVRDALAGRPVADIDLAVPMPPEQTLQRLEQAG 66 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 IPT +S+GT+ + R ++F+IT+LR DL TDGR+A+V FT DW+ D+ RRDFTINA+ Sbjct: 67 LHSIPTGLSHGTVTAVSRGQHFEITSLRRDLATDGRHAEVSFTDDWQEDAARRDFTINAM 126 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK----NID 183 G + DY GGL+DLR ++F+G A R+ ED LR LRFFRF A YG D Sbjct: 127 SLSPDGTLHDYFGGLDDLRAGRVRFVGQAGRRVAEDRLRALRFFRFQARYGRWEQGTEPD 186 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + + A L LS+ER+WSE+ ++L + + M G+ +F + + Sbjct: 187 AAAMQAITAMAGELTQLSAERVWSELRRILTGPHLAAILAAMEQTGVLPVLFPAGYDPA- 245 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 + V +++ R +L+ ++ L+ + S R + Sbjct: 246 PLVEAVANGMPGEGLAEEAIPRLALLVGAKEPPRALAERLRLSGQEAGRLTTCLDGSVPV 305 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 + +++L + +I + + L + + ++L+ + +P F Sbjct: 306 WDGAADMVSLRRLLADDPAQALIDRAWVML-------RDERAAHLTRLLTPL---SRPNF 355 Query: 364 PLTGDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PL G D++ G+ PG +G++L + EW+ + +E+ LL Sbjct: 356 PLAGRDLLAAGLAVPGPALGHLLDTLRTEWLRRGCREGEEEKAALL 401 >gi|154246887|ref|YP_001417845.1| polynucleotide adenylyltransferase region [Xanthobacter autotrophicus Py2] gi|154160972|gb|ABS68188.1| Polynucleotide adenylyltransferase region [Xanthobacter autotrophicus Py2] Length = 406 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 130/415 (31%), Positives = 209/415 (50%), Gaps = 13/415 (3%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +SIV ++ L+ +L+ LN +++ +VGGAVR++L+ L V D+DIATT +P+ V Sbjct: 3 LSIVGAPFWRTPGLMAVLAALNADGEEARVVGGAVRNTLLGLPVSDVDIATTAVPEVVAE 62 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K K +PT + +GT+ ++ F++TTLR D+ TDGR A V F R W D+ RRD Sbjct: 63 RARKAGLKPVPTGVEHGTVTVVADHHAFEVTTLREDMETDGRRAVVRFGRSWLHDAERRD 122 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYA G V+D VGGL+DL R I+FIGD RI EDYLRILR FRF A YG Sbjct: 123 FTLNALYATADGAVVDLVGGLSDLTARRIRFIGDPQARIREDYLRILRLFRFHAAYGAGP 182 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D D +AS++ + GL LS ER+ +E+ KLL A + M + G+ + + + ++ Sbjct: 183 VDKDAFIASVRRRAGLLTLSRERVRTEMLKLLVAPGAAATLAVMSDAGLVQPLIAGIADV 242 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +++ E+ ++ K D++ R L + + + + L L + Sbjct: 243 G--AFTRLAALERDWQAKPDAIRRLAAL-AVRVSDDAARLRDRLRLSNAEARRLAAL--S 297 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 ++ Y G + + A + + +V + W P Sbjct: 298 ATVSDLPDAQAVRAFLYRNGVDAALDLALLAAAHGRDGME--------RVAAMAASWTTP 349 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 P D++ G+ PG+ +G L + WI + F + + LL + + +S Sbjct: 350 RLPFAAADLMALGLIPGRALGAALARAEARWIAADFPTDPDVVAGLLAEAVKASS 404 >gi|163850893|ref|YP_001638936.1| polynucleotide adenylyltransferase region [Methylobacterium extorquens PA1] gi|163662498|gb|ABY29865.1| Polynucleotide adenylyltransferase region [Methylobacterium extorquens PA1] Length = 424 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 129/393 (32%), Positives = 199/393 (50%), Gaps = 13/393 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K K + T I +G Sbjct: 32 LTALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARKAGIKAVGTGIEHG 91 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ ++ + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D G++ D Sbjct: 92 TVTLVVGGEPHEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSLDAGGRLHDT 151 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL ASI A+ L Sbjct: 152 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAASIAARDSLD 211 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A ++A+ + G+ I V E+ +L++ EAE Sbjct: 212 RLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGELG--RLARCAEAE----P 265 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF---FNCNFNQKTLSIPEIKK 315 ++D+ RF L + + + + L R L + ++ + + Sbjct: 266 RLDATARFAAL-AVRTIEDADRLQASLRLSRAEHARLTGYAIALAALHDRPVIEADAVPA 324 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L YG + + +AL ++ +P+ P+TG D+V G+ Sbjct: 325 LVATYGAGPLRE---LLIALDGEPRPRVTPEARTKLDRMEAAGTRPVLPVTGADLVARGV 381 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PG+ VG L + W+ S E L+ Sbjct: 382 APGRAVGAGLRAARDLWLASGCPDDAETRERLI 414 >gi|223932104|ref|ZP_03624108.1| Polynucleotide adenylyltransferase region [Streptococcus suis 89/1591] gi|302023723|ref|ZP_07248934.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 05HAS68] gi|330832758|ref|YP_004401583.1| CCA-adding enzyme [Streptococcus suis ST3] gi|223899085|gb|EEF65442.1| Polynucleotide adenylyltransferase region [Streptococcus suis 89/1591] gi|329306981|gb|AEB81397.1| CCA-adding enzyme [Streptococcus suis ST3] Length = 403 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 99/401 (24%), Positives = 180/401 (44%), Gaps = 14/401 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+++ + D+DIAT+ P +IFS+T I Sbjct: 12 EALPILEKIKAAGYEAYFVGGSVRDAILGRPIHDVDIATSSYPQETKQIFSRT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ KK ++ITT R++ D R +V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + ++ID G+ DL NRT++ +G R ED LRI+R FRF A + I+ A + Sbjct: 128 EAQIIDLFEGMTDLENRTLRAVGIPAERFNEDALRIMRGFRFAATL-DFEIEPTTFEAMV 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K L+ +S ER + E +KLL A + M + + FL D+L ++ Sbjct: 187 KTAPLLEKISVERSFIEFDKLLMADFWRKGLRAMIDSKAYN--FLPDLAGKSDELETMLT 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + S + +L SI S KK+ + + ++ ++ P Sbjct: 245 SLTEEFRFSTSEQAWAMLFVCLGIDSIKSFLKKWKTSNDFQRSVVKLVEIYQLRQA--GP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K++ + YG + + + L + IH K + G + Sbjct: 303 VTKQICFKYGKEFL---YLVEELRQAQGLVTDFVAIDKIDQALTIHDKHEIVVNGGHLMK 359 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + + PG +G +L + + + + ++ + ++ ++ Sbjct: 360 AFDLKPGPVLGELLKEVEFQIVEGQLENEEQAIMTFVKGIL 400 >gi|150016764|ref|YP_001309018.1| tRNA adenylyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149903229|gb|ABR34062.1| tRNA adenylyltransferase [Clostridium beijerinckii NCIMB 8052] Length = 443 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 107/439 (24%), Positives = 186/439 (42%), Gaps = 48/439 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ I+ L + ++ +VGG VRD ++ +D DI T P V+ +F KVI Sbjct: 9 KNVALIIDRLLENGYEAYMVGGCVRDCILGKEPKDWDITTNAKPLEVVELFD----KVIL 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ K+ ++ITT RSD D R+ +V F K D RRDFTIN++ + Sbjct: 65 TGLKHGTVTVMLNKESYEITTYRSDGEYEDNRHPKEVKFVSSLKEDLARRDFTINSMAYN 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++DY G+ DL + I+ +G+ R ED LR+LR RF A + ID L + Sbjct: 125 NISGLVDYFNGIEDLDEKVIRTVGEPRKRFGEDALRMLRAIRFSAQL-DFTIDRLTLNSI 183 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + K ++ +S ERI E NK+L NP I + GI + I + +I + Sbjct: 184 KELKDNIRNISKERIREEFNKILL-NNPRK-IEMLRECGILEYIVPGISKIYNFNKNNSC 241 Query: 251 EAEQVFEWKIDSL--------LRFIVLISWQDKKSILSMAKKFSL--------PREIRYF 294 + ++ I + L+ +L K + + +L I Sbjct: 242 HSHDLYNHAIIATETVESQIYLKLSMLFHDFGKACTIRTDENDNLHCSSYSKESSRIANE 301 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL---------KIFLALHYNNLTHQDT 345 ++ + + N I+ Y +KV I KL K + + ++ Q++ Sbjct: 302 ILKYLKYDNNTINKVTLLIQYHDYRMDNKVSIKKLLREIGIDLFKDLIKIKRADILAQES 361 Query: 346 CFILQVLSDII--------------HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + L ++ + + G D++ G GK++G IL H Sbjct: 362 KNSKKHLINLDGVENILNKIIDKDECFTLKNLKINGGDLLSLGFNKGKEIGEILNHLLDI 421 Query: 392 WINSSFQLSQEDLHHLLRK 410 I +++L L+ K Sbjct: 422 VIEDPKSNEKQELIKLVMK 440 >gi|260101624|ref|ZP_05751861.1| poly A polymerase [Lactobacillus helveticus DSM 20075] gi|260084557|gb|EEW68677.1| poly A polymerase [Lactobacillus helveticus DSM 20075] Length = 399 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 183/399 (45%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T Sbjct: 14 AMPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 70 IRHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLY 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A Sbjct: 130 GQIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK +S ERI E K+ + A + + +++ + L Q+ ++ Sbjct: 189 NHELLKKISVERIREEFVKMGIGPHSRQAFQIFLDTQLSEDVPDFAGKKELLQIYPQLQF 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + SL+ ++ + +D + K + E +I FF+ + Sbjct: 249 SPTLETSLWSLIIILLKLPDEDISKFMRDWKNSNAMTEQVERIIKFFDLISDHTPNDYE- 307 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + G++ +I + + L + + L+ I K + G ++K Sbjct: 308 ----LFQAGERTIINTIDVAHIL---GQPVASEALVDRYLALPIK-KPAELAIDGRFLIK 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +G+ PG ++G+ L ++ ++S + S + + L L Sbjct: 360 HGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398 >gi|328467369|gb|EGF38447.1| tRNA CCA-pyrophosphorylase [Lactobacillus helveticus MTCC 5463] Length = 399 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 183/399 (45%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F+K+ I T Sbjct: 14 AMPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPEEVKELFAKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 70 IRHGTVTVLYGGESYEITTFRTESGYQDYRRPDHVTFVQNLDEDLKRRDFTINALAMDLY 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G+ DL+N I+ +GD R ED LR++R RF + + N++ A Sbjct: 130 GQIVDLFNGVEDLKNHIIRAVGDPEKRFHEDALRMMRAVRFTSQL-KFNLEEKTEQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK +S ERI E K+ + A + + +++ + L Q+ ++ Sbjct: 189 NHELLKKISVERIREEFVKMGIGPHSRQAFQIFLDTQLSEDVPDFAGKKELLQIYPQLQF 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + SL+ ++ + +D + K + E +I FF+ + Sbjct: 249 SPTLETSLWSLIIILLKLPDKDISKFMRDWKNSNAMTEQVERIIKFFDLISDHTPNDYE- 307 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + G++ +I + + L + + L+ I K + G ++K Sbjct: 308 ----LFQAGERTIINTIDVAHIL---GQPVASEALVDRYLALPIK-KPAELAIDGRFLIK 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +G+ PG ++G+ L ++ ++S + S + + L L Sbjct: 360 HGMRPGAELGHTLNKIRELVVSSRLENSPDAIEKYLEDL 398 >gi|331701410|ref|YP_004398369.1| CCA-adding enzyme [Lactobacillus buchneri NRRL B-30929] gi|329128753|gb|AEB73306.1| CCA-adding enzyme [Lactobacillus buchneri NRRL B-30929] Length = 403 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 99/411 (24%), Positives = 183/411 (44%), Gaps = 24/411 (5%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 MV I K FH + + IL + ++ VGG+VRD+++ + D+DIAT+ P V Sbjct: 7 MVEIP--KEFH--EALPILQKIESAGYEAYFVGGSVRDTILKRPIHDVDIATSAYPSEVK 62 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSL 118 +F +T + T I +GT+ I+ +++TT R++ D R V F R K D Sbjct: 63 ALFKRT----VDTGIEHGTVMILDHGTGYEVTTFRTESGYQDYRRPDHVTFVRSLKEDLK 118 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFTINAL + G+V D GGL+D+R I+ +GD + R ED LR++R RF + Sbjct: 119 RRDFTINALALAENGQVTDLFGGLSDMRKHIIRAVGDPNERFNEDALRMMRAVRFASQL- 177 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I+ L + + L ++ ER +E K++ + + + M +++ + + Sbjct: 178 DFKIEDATLAGIARHSQLLAKIAVERSHTEFVKMMLGSDANHGLKIMIQTNLYQHV--PI 235 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 L QL Q+ + + ++ + + + I K++ +I +I Sbjct: 236 LGEHLVQLRQIADTDFTLTNEVQVWA-LLAFKFGFNSQQITRFLKRWKTANKIINDVILT 294 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 F + + + Y G + + + +F T + + + + Sbjct: 295 VELLFAIQRGQVTNL--TLYHAGSENVDNAIAVF-------ADQSKTTGLSERYNRLAIK 345 Query: 359 KKPLFPLTGDDVVKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 K +TG +++K G+ P ++G +L + +Q + EDL Sbjct: 346 NKHQLKITGGELIKRGVLKPSPQLGQVLNYLEQNVVADKINNEPEDLVQAA 396 >gi|302875215|ref|YP_003843848.1| Polynucleotide adenylyltransferase region [Clostridium cellulovorans 743B] gi|307688896|ref|ZP_07631342.1| Polynucleotide adenylyltransferase region [Clostridium cellulovorans 743B] gi|302578072|gb|ADL52084.1| Polynucleotide adenylyltransferase region [Clostridium cellulovorans 743B] Length = 454 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 109/460 (23%), Positives = 206/460 (44%), Gaps = 51/460 (11%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + K + I+ +L + ++ IVGG VRDS++ + +D DI T+ P+ ++ Sbjct: 1 MTRNINIKM--PDKVKKIVGILYRSNHEAFIVGGCVRDSILGIKPKDWDITTSAEPEEII 58 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSL 118 +F+ +PT I +GTI ++ K+ F+ITT R D D R+ +V FT+ + D Sbjct: 59 ELFNSEGCTTVPTGIKHGTITVVIEKEPFEITTYRIDGEYKDSRHPSEVKFTKSLEEDLK 118 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRD+TINA+ + + ++DY G D+ + I+ +G+ R+ ED LR+LR RF A G Sbjct: 119 RRDYTINAMAYNDKVGLVDYFNGQEDIDKKLIRAVGEPKKRLEEDALRMLRAHRFSAQLG 178 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 K I+ + A ++ +S ERI E NK+L + N + +Y G+ + F ++ Sbjct: 179 FK-IEKETSEAIKALSVNIRQVSIERIREEFNKILLSNNLVQLFQ-LYENGLLQHFFGEL 236 Query: 239 Q----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK------------- 275 +IS+ +IE Q E ++ LR+ +LI++ ++ Sbjct: 237 ANCFERSKKKGDISIYSHVYLIELLQSIEKELS--LRWAILINYINEFSYNLEDTLVKPN 294 Query: 276 ---------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 ++ K+ + ++ + + IK++ G + Sbjct: 295 QCKYSTTSQDCASNILKRMKYDNKTIERVLVLAKYQEVIISDKVA-IKRILNTTGIENFK 353 Query: 327 AKLKIFLA---LHYNNLTHQDTCFILQVLSDI-------IHWKKPLFPLTGDDVVKYGIP 376 A ++I A L N ++ I+++ + + + G+D++K G+ Sbjct: 354 ALVEIKEAKIKLQSENDINEGMKEIVRIKEEFYEIISSNQCFTIKDLAVKGEDIIKLGVK 413 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PGK +G IL IN + L +++ + + + Sbjct: 414 PGKFIGEILNTLLDMVINEPEINEKHILIGKVKEQMDTRE 453 >gi|306829865|ref|ZP_07463052.1| tRNA adenylyltransferase [Streptococcus mitis ATCC 6249] gi|304427876|gb|EFM30969.1| tRNA adenylyltransferase [Streptococcus mitis ATCC 6249] Length = 399 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 102/398 (25%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + + ++ VGG+VRD+L+N + D+DIAT+ P+ +IFS+T Sbjct: 13 ALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPEETKQIFSRTA----DIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL N+ ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 129 GEIIDLFHGLKDLENQVLRAVGVASERFNEDALRIMRGFRFQASLG-FELEQETFEAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ + S ++L ++ + Sbjct: 188 LTPLLEKISVERTFVEFDKLLRAPFWRVGLSSMIESQAYDYL-PDMAD-SREKLQKLFDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + K S K + R+ + ++ + Sbjct: 246 EADFTFE-SSEQAWADLLWALEIKDAQSFLKHWKTSRQFAKQVQDLLTILALREEGEL-- 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + ++ ++ A S IH KK + G + + Sbjct: 303 SKRDCYRFDLDSLLQAERLRQA---QGKEVNPQLITETYQSLTIHDKKEIQINGGILIKE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G+IL + ++ + ++ +H LR+ Sbjct: 360 YGYQPGPDLGDILTEIEFAIVDGDLENDRDAIHTYLRE 397 >gi|228477863|ref|ZP_04062477.1| cca-adding enzyme [Streptococcus salivarius SK126] gi|228250353|gb|EEK09593.1| cca-adding enzyme [Streptococcus salivarius SK126] Length = 395 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 177/399 (44%), Gaps = 14/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + Sbjct: 8 ALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ +++TT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 64 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +VID GL DL NR ++ +G A R ED LRI+R RF A + +I+ A Sbjct: 124 AEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFQAMTS 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + I + ++ + D QE + + + V + Sbjct: 183 HAPLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQAFVADY 241 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + L++ + S KK+ + + S + L Sbjct: 242 VEDFRFTSSEQAWAATLLALKHDNP-RSFLKKWKTSVNFQKTVQSLIEIFNFR--LERAV 298 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y YG +++ A + A L + +IH K + G + + Sbjct: 299 TKQDVYQYGKELLEAAETLRQA---QGLDVDYERIVALDGQLLIHDKHEIVVNGGTLMKE 355 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G PG +G +L + ++ +E + ++ + Sbjct: 356 LGFKPGPDLGRVLKAIENAIVDGKLANDKEAIMAFVQAM 394 >gi|76787734|ref|YP_329982.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae A909] gi|76562791|gb|ABA45375.1| polyA polymerase [Streptococcus agalactiae A909] Length = 397 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 190/402 (47%), Gaps = 18/402 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + Sbjct: 8 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ + D R +V F R + D RRDFT+NA ++ Sbjct: 64 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 124 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 183 HASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 242 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + +FE + + LI + + + KK+ + + + ++ + + Sbjct: 243 KDFLFETSEQA---WASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 299 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y YG ++ I A D I Q+ S++ + + G ++ Sbjct: 300 --KEHLYRYGKTIIKQAEGIRKARGLMV----DFEKIEQLDSELAIHDRHEIVVNGGTLI 353 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 K GI PG ++G+I+ + + +E + H +++ + Sbjct: 354 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 395 >gi|152975060|ref|YP_001374577.1| tRNA CCA-pyrophosphorylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189081870|sp|A7GN74|CCA_BACCN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|152023812|gb|ABS21582.1| Polynucleotide adenylyltransferase region [Bacillus cytotoxicus NVH 391-98] Length = 397 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 182/396 (45%), Gaps = 15/396 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM++F K +P + + Sbjct: 10 IIETLKEHGHEAYFVGGSVRDFIIDRPIGDIDIATSALPEEVMKLFPKH----VPVGLEH 65 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ G++ Sbjct: 66 GTVIVLQDGEPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEDGEI 125 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG ++ R I +G+A R ED LR++R RF + G +++ A + Sbjct: 126 IDLFGGQEAIQKREIVTVGNAAERFQEDALRMMRGIRFVSTLG-FSLEEKTECAIKRYGH 184 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L+ ++ ERI E KLL + + + +F + +Q L + Sbjct: 185 LLEHIAIERITVEFEKLLTGPYCVKGLQKLVETKLFMHL-PYLQMSEEKILKAAEYNWES 243 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 FE +I++ F+ I + L +++ + +++ +KT + Sbjct: 244 FETEIEAWAFFLSCIGEEHPSVFL---RQWKFSNKKIKEIVAVLLAIRTRKTKEWDAV-- 298 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 Y G ++ + +++ + + ++ + K+ ++G+D++ + Sbjct: 299 FLYQTGVQIALMAERVYQ-VMIEEYNMSTVSEVQRLFDSLPIQKRQEMNVSGNDLLSWTD 357 Query: 376 P-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 PG V +L ++E + + +E + + + Sbjct: 358 KTPGPWVAEVLQKIEEEILQKRLENEKEAIRGWIEE 393 >gi|322372335|ref|ZP_08046871.1| polyA polymerase [Streptococcus sp. C150] gi|321277377|gb|EFX54446.1| polyA polymerase [Streptococcus sp. C150] Length = 400 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 175/400 (43%), Gaps = 14/400 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L+N + D+DIA++ P+ ++F +T + Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQVFERT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 68 GIEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +VID GL DL NR ++ +G A R ED LRI+R RF A + +I+ A Sbjct: 128 NAEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFEAMT 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A + I + ++ + D QE + S V + Sbjct: 187 SHAPLLEKISIERSFIEFDKLLLAPHWKKGIKALLETKAYQYL-PDFQETAEKWQSFVAD 245 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F + L++ + S KK+ + + S + + Sbjct: 246 YAEGFRFTSSEQAWAATLLALKHDNP-RSFLKKWKTSVNFQKTVQSLV--GIFKFRMERA 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K Y YG +++ + A LT +IH K + G + Sbjct: 303 VTKPDVYQYGKELLEEAEGLRQA---QGLTVDYERIAELDGQLLIHDKHEIVVNGGMLMK 359 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + G PG +G L + +N + +E + ++ + Sbjct: 360 ELGFKPGPDLGRALKAIENTIVNGNLANDKEAIIAFVQAM 399 >gi|85707865|ref|ZP_01038931.1| tRNA nucleotidyltransferase [Erythrobacter sp. NAP1] gi|85689399|gb|EAQ29402.1| tRNA nucleotidyltransferase [Erythrobacter sp. NAP1] Length = 396 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 129/402 (32%), Positives = 198/402 (49%), Gaps = 26/402 (6%) Query: 1 MVSIVQ-HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 M + +Q W L + + L + VGGAVRD+L+ ++V D+D ATT PD+V Sbjct: 1 MTNPLQNADWPRRDGLTALTTALGAQHIR--WVGGAVRDTLLGVAVHDVDCATTHTPDQV 58 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 + + + + +PT I +GT+ I + ++TTLR D+ TDGR A V F +W+ D+ R Sbjct: 59 IDLCADAGIRTVPTGIEHGTVTAILKDGPVEVTTLRRDVATDGRRATVAFATEWREDAAR 118 Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINALYA + +V DY GGL+DL R ++FIGDA RI ED+LRILR++RF A +G Sbjct: 119 RDFTINALYAHPETLEVSDYFGGLDDLAKRRVRFIGDARQRIAEDHLRILRYYRFQARFG 178 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +D + A + LK LS ER+ E+ KLL +P I M++ + + I + Sbjct: 179 -AELDPEAEDACSELSATLKGLSRERVADELLKLLSLPDPGATIERMFDRAVLRVILPET 237 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 ++QL ++IE E + D + R L+ +A + L + R L+S Sbjct: 238 ALRHVEQLRELIEREAEQGFAPDPIRRLATLLP-PSPDVAEGVAARLRLSKAQRAQLVSA 296 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + + L Y G+ I +L + I W Sbjct: 297 SE----RLGHDVSNPRVLAYELGNAFAIDRLLLLGEDAAA----------------IAGW 336 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 + P FPL G +V G+ G V IL ++ W++ F Sbjct: 337 QAPTFPLKGGAIVARGVAAGPDVARILQLVEKRWVSEGFPSE 378 >gi|170764104|ref|ZP_02632218.2| polyA polymerase family protein [Clostridium perfringens E str. JGS1987] gi|170662329|gb|EDT15012.1| polyA polymerase family protein [Clostridium perfringens E str. JGS1987] Length = 424 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 113/423 (26%), Positives = 188/423 (44%), Gaps = 31/423 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 8 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 63 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 64 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 123 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G DL+N+ I+ +GD R ED LR+LR RF K I+ + Sbjct: 124 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 182 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + +P ++ + G + + + + L D Sbjct: 183 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 242 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 243 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 301 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N +S +K L + V + L L + L++ D + +SDI Sbjct: 302 --NINNISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDI 359 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 360 LASKEPIFIKDLAITGNDLITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 419 Query: 411 LIA 413 + Sbjct: 420 FYS 422 >gi|56694954|ref|YP_165299.1| polyA polymerase family protein [Ruegeria pomeroyi DSS-3] gi|56676691|gb|AAV93357.1| polyA polymerase family protein [Ruegeria pomeroyi DSS-3] Length = 384 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 122/406 (30%), Positives = 187/406 (46%), Gaps = 28/406 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ + W + + L +G ++ VGG VR++L+ V DIDI T P+RVM Sbjct: 1 MTRIDEAWLTEPATQQVCRALTEGGAQALFVGGCVRNALLGAPVSDIDITTDAHPERVMA 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + K +PT I++GT+ ++ ++TT R D+ TDGR A V F+ D+ RRD Sbjct: 61 LAAAAGIKAVPTGIAHGTVTLVANSIPHEVTTFRRDVETDGRRAVVAFSDSIHEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-- 179 FT+NALYA G V+D + GL DL+ R ++FIGDA RI EDYLR LR+FRF A YG+ Sbjct: 121 FTMNALYARPDGTVLDPLDGLPDLQARRVRFIGDATDRIREDYLRSLRYFRFHAWYGDAE 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D++ L A GL LS ER+ +E+ KL A +P ++ M G+ ++ Sbjct: 181 AGFDAEALAAIAGNLDGLSRLSRERVGAEMLKLFAAPDPAPSVAAMRAAGVLAQLLPGAD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + +L L + + D + R L + S L + L + Sbjct: 241 DRALAPLVHLED-----GLGADPIRRLAALGDGEALAS-------LRLSKAQMALLDTL- 287 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + L +L + G + L + AL L I + + + Sbjct: 288 ----RRAALGTAGAGELGHELGVEAARDALLLRAALLEQPLDPHAPAAIARGAAAV---- 339 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+T D++ G +G L K WI S F LS+ L Sbjct: 340 ---FPVTARDLMPA--YSGPALGARLATLKARWIASDFSLSRAALL 380 >gi|77409475|ref|ZP_00786167.1| polyA polymerase family protein [Streptococcus agalactiae COH1] gi|77171918|gb|EAO75095.1| polyA polymerase family protein [Streptococcus agalactiae COH1] Length = 402 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 190/402 (47%), Gaps = 18/402 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + Sbjct: 13 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ + D R +V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 129 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 188 HAPLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + +FE + + LI + + + KK+ + + + ++ + + Sbjct: 248 KDFLFETSEQA---WASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y YG ++ I A D I Q+ S++ + + G ++ Sbjct: 305 --KEHLYRYGKTIIKQAEGIRKARGLMV----DFEKIEQLDSELAIHDRHEIVVNGGTLI 358 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 K GI PG ++G+I+ + + +E + H +++ + Sbjct: 359 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400 >gi|254475356|ref|ZP_05088742.1| polyA polymerase family protein [Ruegeria sp. R11] gi|214029599|gb|EEB70434.1| polyA polymerase family protein [Ruegeria sp. R11] Length = 383 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 124/409 (30%), Positives = 194/409 (47%), Gaps = 28/409 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 +++++ W D D ++ +L G VGG VR++L+ D+D+ T + P+RV+ Sbjct: 1 MTVLRTDWLEDPDTQHVCKVLKDGGADVYFVGGCVRNALLGAGASDLDLCTNMRPERVID 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + IPT I +GT+ ++ + ++ITT R D+ TDGR A V F+ K D+ RRD Sbjct: 61 VAGAAGIRAIPTGIDHGTVTLVHKSVPYEITTFRRDVATDGRRAVVAFSDCIKEDAARRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--E 179 FT+NALYA G+V+D + GL DL R ++FIG A +RI EDYLR LR+FRF A YG + Sbjct: 121 FTMNALYARPDGEVVDPLDGLPDLVARRVRFIGTAENRIREDYLRSLRYFRFHAWYGNPD 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D D L A G+ LS ER+ E+ KLL A +P A+ M G+ I Sbjct: 181 LGFDPDALSAIAGNLDGIPSLSRERVGQELVKLLAAPDPAPAVAVMRQIGLLSVILPGSD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + +L L + + + R L +D + L ++K + ++ Sbjct: 241 DRALAPLIHLEA-----GMPPEPMRRLAAL-GGEDPRDALRLSKA-------QANMVQLL 287 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 T L Y+Y V + + AL L + +++ Sbjct: 288 RTEATGST----APAALAYMYDQSVARDAMLLRSALLEMPLPP-------MLETELNAGA 336 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + +FPLT D++ G +G L K +WI S F L ++ L L Sbjct: 337 QAVFPLTAQDLMPD--LQGPALGVALKRLKSDWIASGFSLDKDTLLKRL 383 >gi|261417981|ref|YP_003251663.1| tRNA CCA-pyrophosphorylase [Geobacillus sp. Y412MC61] gi|319767207|ref|YP_004132708.1| polynucleotide adenylyltransferase region protein [Geobacillus sp. Y412MC52] gi|261374438|gb|ACX77181.1| Polynucleotide adenylyltransferase region [Geobacillus sp. Y412MC61] gi|317112073|gb|ADU94565.1| Polynucleotide adenylyltransferase region protein [Geobacillus sp. Y412MC52] Length = 404 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 178/401 (44%), Gaps = 18/401 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I+ L + ++ VGGAVRD L+ + D+DIAT+ LP+ VMR+F KT I Sbjct: 6 EQALGIIRQLKRHGYEAYFVGGAVRDLLIGRPIGDVDIATSALPEEVMRLFPKT----ID 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT+ ++ +++TT R+D D R + V F R + D RRDFT+NA+ D Sbjct: 62 VGSKHGTVVVVHEGTAYEVTTFRTDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAMD 121 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++G +ID GG + R I +G A R ED LR++R RF + G + D A Sbjct: 122 ERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLG-FALAEDTKSAI 180 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ + +S ER+ E+ KLL A+ + + G+F + L Q++ Sbjct: 181 VQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYL------PGLAAKEQLL 234 Query: 251 EAEQVFEWK--IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + F W R+ +L D K I + + LP ++ + + Sbjct: 235 RSAAAFRWPWLTKREERWALLCRALDVKDIRPFLRAWKLPNKVIDEAGAILAALDDVPRP 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++LF G + ++ + AL + + + + + K + G Sbjct: 295 EAWTNEQLFS-AGLERALSVEAVRAAL-CGAPSEPHHEELRRRFAALPIKTKGELAVNGK 352 Query: 369 DVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 DV+++ G P G V L + ++S + +E ++ L Sbjct: 353 DVIRWAGKPAGPWVKETLDAIWRAVVSSEVENEKERIYAWL 393 >gi|258508389|ref|YP_003171140.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus rhamnosus GG] gi|257148316|emb|CAR87289.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus rhamnosus GG] gi|259649703|dbj|BAI41865.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus rhamnosus GG] Length = 398 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 100/406 (24%), Positives = 170/406 (41%), Gaps = 20/406 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I IL + ++ VGG+VRD+L+ L + D+DIA++ P+ + RIF +T + Sbjct: 11 KAAIPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R++ D R V F R D RRDFTINAL Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +ID GL DL+NR ++ +GD H R ED LR++R RF + G +I++ A Sbjct: 127 HDGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLG-FHIEATTKAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 LK +S ERI +E N+LL + + + +F L Q Sbjct: 186 AANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAY--APKLAPHQAALQQFS 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E I S ++ + +S L K+ ++ + T + Sbjct: 244 ELPNQAFTSIASGWTALIFMLKVAPESFLPAWKQ---SNDLMGLVDQAVTLLRKMPTPTA 300 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + Y G + ++ + + + + + K LTG D+ Sbjct: 301 WD----LYSAGSAAVAVVSEVAALMDHQFV----PASLTTAYEALPIHSKKTLALTGRDL 352 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ G+ PG +G IL + ++ S + L ++ Sbjct: 353 IQAGVRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEMSREPS 398 >gi|309360831|emb|CAP30493.2| hypothetical protein CBG_11474 [Caenorhabditis briggsae AF16] Length = 433 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 122/413 (29%), Positives = 205/413 (49%), Gaps = 19/413 (4%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + L+ + L K + I GGAVRD LMN+ D+D A+T P ++ +F + Sbjct: 15 DFRALFTPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATPTQMKEMFEQ 74 Query: 66 TRYKVIPT-SISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 +++ +GTI K+ F+ITTLR D++ DGR AKV +T DW+ D+ RRD T Sbjct: 75 ENIRMLHKRGEEHGTITCRIDEKENFEITTLRIDVVCDGRRAKVEYTTDWQLDANRRDLT 134 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNI 182 IN+L+ D G V+DY GG+ D+ R + F+GDA RI EDYLRILR+FRFF + Sbjct: 135 INSLFLDLHGNVVDYFGGIGDIETRRVAFVGDARQRIQEDYLRILRYFRFFGRISNSPDH 194 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 ++D + A I K G+ +S+ERIW+E+ K++ + + + M ++ +E + Sbjct: 195 EADTIQAIIDNKDGMSGISAERIWTELKKIVIGRMADDVVKAMIEQCELQKYLGLPEECN 254 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY---FLISFF 299 + + Q+ + F ++ + L + K I K L + R+ F++ Sbjct: 255 ITRFRQIFKR---FPKSVEPMTMVASLC--EGVKQIAQFHKITKLSNDERFLGEFILRER 309 Query: 300 NC---NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 N N I + L G + + +L++ L ++ D + + Sbjct: 310 EAALENMNNDDWWIDRMVDLEVRPGHENLPDRLRLRLVQLARSVLADDER-----IEMLQ 364 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + P FP+TG D+++ G+ G V N+L++ + W S F ++E+L R Sbjct: 365 KFTPPQFPITGRDLMEAGVRKGPGVKNVLIYLYELWKTSRFTSTKEELLERAR 417 >gi|76798774|ref|ZP_00780990.1| polynucleotide adenylyltransferase [Streptococcus agalactiae 18RS21] gi|76585881|gb|EAO62423.1| polynucleotide adenylyltransferase [Streptococcus agalactiae 18RS21] Length = 402 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 190/402 (47%), Gaps = 18/402 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + Sbjct: 13 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ + D R +V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 129 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 188 HASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + +FE + + LI + + + KK+ + + + ++ + + Sbjct: 248 KDFLFETSEQA---WASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y YG ++ I A D I Q+ S++ + + G ++ Sbjct: 305 --KEHLYRYGKTIIKQAEGIRKARGLMV----DFEKIEQLDSELAIHDRHEIVVNGGTLI 358 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 K GI PG ++G+I+ + + +E + H +++ + Sbjct: 359 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFIKQYL 400 >gi|77414516|ref|ZP_00790663.1| polyA polymerase family protein [Streptococcus agalactiae 515] gi|77159439|gb|EAO70603.1| polyA polymerase family protein [Streptococcus agalactiae 515] Length = 402 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 190/402 (47%), Gaps = 18/402 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + Sbjct: 13 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ + D R +V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 129 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 188 HASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + +FE + + LI + + + KK+ + + + ++ + + Sbjct: 248 KDFLFETSEQA---WASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGL- 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y YG ++ I A D I Q+ S++ + + G ++ Sbjct: 304 -AKEHLYRYGKTIIKQAEGIRKARGLMV----DFEKIEQLDSELAIHDRHEIVVNGGTLI 358 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 K GI PG ++G+I+ + + +E + H +++ + Sbjct: 359 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400 >gi|22537488|ref|NP_688339.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae 2603V/R] gi|25011453|ref|NP_735848.1| tRNA CCA-pyrophosphorylase [Streptococcus agalactiae NEM316] gi|77406286|ref|ZP_00783352.1| polyA polymerase family protein [Streptococcus agalactiae H36B] gi|77411183|ref|ZP_00787535.1| polyA polymerase family protein [Streptococcus agalactiae CJB111] gi|73619865|sp|Q8E4J0|CCA_STRA3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619866|sp|Q8DYY1|CCA_STRA5 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|22534367|gb|AAN00212.1|AE014253_10 polyA polymerase family protein [Streptococcus agalactiae 2603V/R] gi|24412991|emb|CAD47070.1| unknown [Streptococcus agalactiae NEM316] gi|77162801|gb|EAO73760.1| polyA polymerase family protein [Streptococcus agalactiae CJB111] gi|77175098|gb|EAO77901.1| polyA polymerase family protein [Streptococcus agalactiae H36B] Length = 402 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 190/402 (47%), Gaps = 18/402 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + Sbjct: 13 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ + D R +V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 129 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 188 HASLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSHAFNYLPCLKNRELQLSAFLSQLD 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + +FE + + LI + + + KK+ + + + ++ + + Sbjct: 248 KDFLFETSEQA---WASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y YG ++ I A D I Q+ S++ + + G ++ Sbjct: 305 --KEHLYRYGKTIIKQAEGIRKARGLMV----DFEKIEQLDSELAIHDRHEIVVNGGTLI 358 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 K GI PG ++G+I+ + + +E + H +++ + Sbjct: 359 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 400 >gi|182625370|ref|ZP_02953143.1| polyA polymerase family protein [Clostridium perfringens D str. JGS1721] gi|177909367|gb|EDT71819.1| polyA polymerase family protein [Clostridium perfringens D str. JGS1721] Length = 424 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 112/423 (26%), Positives = 188/423 (44%), Gaps = 31/423 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 8 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 63 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 64 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 123 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G DL+N+ I+ +G+ R ED LR+LR RF K I+ + Sbjct: 124 YLGFKDCFNGKEDLKNKLIRCVGNPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 182 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + +P ++ + G + + + + L D Sbjct: 183 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 242 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 243 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 301 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N +S +K L + V + L L + L++ D + +SDI Sbjct: 302 --NINNISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDI 359 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 360 LASKEPIFIKDLAITGNDLITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 419 Query: 411 LIA 413 + Sbjct: 420 FYS 422 >gi|146318483|ref|YP_001198195.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 05ZYH33] gi|146320676|ref|YP_001200387.1| tRNA CCA-pyrophosphorylase [Streptococcus suis 98HAH33] gi|253751610|ref|YP_003024751.1| CCA-adding enzyme [Streptococcus suis SC84] gi|253753512|ref|YP_003026653.1| CCA-adding enzyme [Streptococcus suis P1/7] gi|253755663|ref|YP_003028803.1| CCA-adding enzyme [Streptococcus suis BM407] gi|166233886|sp|A4W0U8|CCA_STRS2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233888|sp|A4VUK6|CCA_STRSY RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|145689289|gb|ABP89795.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus suis 05ZYH33] gi|145691482|gb|ABP91987.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus suis 98HAH33] gi|251815899|emb|CAZ51513.1| CCA-adding enzyme [Streptococcus suis SC84] gi|251818127|emb|CAZ55921.1| CCA-adding enzyme [Streptococcus suis BM407] gi|251819758|emb|CAR45646.1| CCA-adding enzyme [Streptococcus suis P1/7] gi|292558265|gb|ADE31266.1| Polynucleotide adenylyltransferase [Streptococcus suis GZ1] gi|319758048|gb|ADV69990.1| tRNA CCA-pyrophosphorylase [Streptococcus suis JS14] Length = 403 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 99/402 (24%), Positives = 185/402 (46%), Gaps = 16/402 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+++ + D+DIAT+ P +IFS+T I Sbjct: 12 EALPILEKIKAAGFEAYFVGGSVRDAILGRPIHDVDIATSSYPQETKQIFSRT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ KK ++ITT R++ D R +V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEGKKEYEITTFRTEEEYVDFRRPSQVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +++D G+ DL NRT++ +G R ED LRI+R FRF A + I+ A + Sbjct: 128 EAQIVDLFDGMTDLENRTLRAVGIPAERFNEDALRIMRGFRFAATL-DFEIEPTTFEAMV 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L+ +S ER + E +KLL A + M + + FL D+L ++ Sbjct: 187 QTAPLLEKISVERSFIEFDKLLMADFWRKGLRAMIDSKAYN--FLPDLAGKSDELEAMLT 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + S + +L +I S KK+ + + ++ ++ P Sbjct: 245 SLTEEFRFSTSEQAWALLFVCLGIDNIKSFLKKWKTSNDFQRSVVKLVEIYQLRQA--GP 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K++ + YG + L + LH D I ++ + K + G ++ Sbjct: 303 VTKQICFKYGKEF----LYLVEELHQAQGFVTDFAAIDKIDQALTIHDKHEIVVNGGHLM 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 K + + PG +G +L + + + + ++ + ++ ++ Sbjct: 359 KAFDLKPGPVLGELLKEVEFQIVEGQLENEEQAIMTFVKGIL 400 >gi|229552186|ref|ZP_04440911.1| tRNA adenylyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258539600|ref|YP_003174099.1| tRNA nucleotidyltransferase CCA-adding enzyme [Lactobacillus rhamnosus Lc 705] gi|229314488|gb|EEN80461.1| tRNA adenylyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151276|emb|CAR90248.1| tRNA nucleotidyltransferase, CCA-adding enzyme [Lactobacillus rhamnosus Lc 705] Length = 398 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 101/406 (24%), Positives = 170/406 (41%), Gaps = 20/406 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I IL + K+ VGG+VRD+L+ L + D+DIA++ P+ + RIF +T + Sbjct: 11 KAAIPILKKIEAAGYKAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R++ D R V F R D RRDFTINAL Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +ID GL DL+NR ++ +GD H R ED LR++R RF + G +I++ A Sbjct: 127 HDGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLG-FHIEATTKAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 LK +S ERI +E N+LL + + + +F L Q Sbjct: 186 AANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAY--APKLAPHQAALQQFS 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E I S ++ + +S L K+ ++ + T + Sbjct: 244 ELPNQAFTSIASGWTALIFMLKVAPESFLPAWKQ---SNDLMGLVDQAVTLLRKMPTPTA 300 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + Y G + ++ + + + + + K LTG D+ Sbjct: 301 WD----LYSAGSAAVAVVSEVAALMDHQFV----PASLTTAYEALPIHSKKTLALTGRDL 352 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ G+ PG +G IL + ++ S + L ++ Sbjct: 353 IQAGVRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEMSREPS 398 >gi|293402195|ref|ZP_06646333.1| polyA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304302|gb|EFE45553.1| polyA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 452 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 106/444 (23%), Positives = 182/444 (40%), Gaps = 52/444 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +I I+++L + ++ VGG VRD LM D DI T LP M+IF+ Y+VIP Sbjct: 7 PSMIKIVTILKEAGYEAYFVGGCVRDMLMQRKTHDYDITTNALPQETMQIFAAKGYQVIP 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GTI ++ K+ +ITT R + D R+ ++FT+D K D RRDFT+NA+ D Sbjct: 67 TGIKHGTITVLVNKEPVEITTYRIEQTYHDHRHPSTIIFTKDLKEDLKRRDFTMNAIAYD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + D G D+ + I+ +GDA R ED LR+LR RF + +D A Sbjct: 127 PTYGLYDPFHGAQDIAQKRIRCVGDATTRFQEDALRMLRALRFSCVL-DFTLDEACGKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E N+LL + N + +Y+ + EI + + Sbjct: 186 QQNHNLLRYVSKERIREEFNRLLMGEKA-NTLQLLYDFHVLDEILPGYSALYGHEQKTPW 244 Query: 251 EAEQVFEWKIDSLLR---------FIVLISW--------QDKKSILSMAKKFSLPREIRY 293 VF+ +L ++ D I K + +I Y Sbjct: 245 HIYDVFQHTDIALNHTKGYPLESKLAIIFHDWGKPACESFDDNGIAHYKKHAYVSEQIAY 304 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 ++ KT+ + ++ Y + L+ F+A +N+ T +Q+ Sbjct: 305 --EQMKALKYDNKTIETVCLFIRYHDYYVHEKRSTLRRFVAHFHNDFTLAKQALDIQLAD 362 Query: 354 DIIHWK----------------------------KPLFPLTGDDVVKYGIPPGKKVGNIL 385 D+ + + G D+++ G GK +G++L Sbjct: 363 DMAKNRTKSDEKIVIIKNCQRLLSIMEKEKDMLSMKDLAINGHDLIQLGFQ-GKAIGDVL 421 Query: 386 VHCKQEWINSSFQLSQEDLHHLLR 409 + + + ++ L ++ Sbjct: 422 KAVYEWVLEDPSRNEKDILERYIK 445 >gi|319946991|ref|ZP_08021225.1| polyA polymerase family protein [Streptococcus australis ATCC 700641] gi|319747039|gb|EFV99298.1| polyA polymerase family protein [Streptococcus australis ATCC 700641] Length = 406 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 97/410 (23%), Positives = 192/410 (46%), Gaps = 23/410 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD+++ + D+DIA++ P+ IF +T I Sbjct: 12 EALPILEKIRRAGYEAYFVGGSVRDAILGRPIHDVDIASSSYPEETKAIFERT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R++ + D R V F R + D RRDFT+N+ + Sbjct: 68 GIEHGTVLVLENHQEYEITTFRTEDVYVDFRRPSAVNFVRSLEEDLKRRDFTVNSFALSE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G++ID GL DL NR ++ +G A R ED LRI+R FRF A G +++ + A Sbjct: 128 EGEIIDLFNGLEDLENRVLRAVGVATERFNEDALRIMRGFRFQASLG-FDLEEETFKAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVI 250 L+ +S ERI+ E++KLL A + + ++ + L ++SL++L Q+ Sbjct: 187 DCAPLLEKISVERIFIELDKLLLAPYWRKGLEGVIASQSYQYLPLLQNSQLSLEKLFQLS 246 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + L+ D+ + + KK+ R+ + ++ S+ Sbjct: 247 MDYTFTSSEQA----WAALLLTLDENKVSAFFKKWKTSRDFAKKVEQLVEIYRLREKASL 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++ Y Y ++++ ++ A + D I ++ + K + G + Sbjct: 303 N--RRDVYRYDRNLLLSAEELRQA----HGLPVDFQVIEELYDSLAIHDKHEIVVNGGML 356 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED----LHHLLRKLIASS 415 +K Y + PG +G +L + ++ + ++ L H L ++ + Sbjct: 357 MKEYNLKPGPSLGQVLSAIEWAIVDGELENDKKAIGNFLSHYLEEMKGEA 406 >gi|58038811|ref|YP_190775.1| Poly(A) polymerase/t-RNA nucleotidyltransferase [Gluconobacter oxydans 621H] gi|58001225|gb|AAW60119.1| Poly(A) polymerase/t-RNA nucleotidyltransferase [Gluconobacter oxydans 621H] Length = 396 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 115/382 (30%), Positives = 186/382 (48%), Gaps = 16/382 (4%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 K+ +VGG+VRD L ++V D+D+AT PD V R + +VIPT +++GT+ + Sbjct: 26 KARLVGGSVRDLLAGVAVHDLDLATPEPPDDVQRRLEQAGIRVIPTGLAHGTVTALLDSV 85 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++ITTLR D TDGR+A V +T+DW D+ RRDFTINA+ D+ ++ DY GG D++N Sbjct: 86 PYEITTLRRDEETDGRHAIVAWTQDWAEDAARRDFTINAMSLDRHDRLHDYFGGREDIQN 145 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++F+GDA RI ED LR LRFFRF A YG D A + + LS+ER+ S Sbjct: 146 HRVRFVGDASRRIAEDALRALRFFRFDARYGHGVPDRKACQAVSEQLGLIGTLSAERVAS 205 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ ++L I M + G+ + + + + L++L E + SLLR Sbjct: 206 ELLRILSGPRLNETIGAMASVGLLQVLLPEPDQHFLNRLLAC-------EAPVSSLLRLF 258 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMI 326 L + +A + L + ++ + LS ++++L L +++ Sbjct: 259 ALCHRNSPE----LAGRLKLSNADGAKIEAWASAQPALHPELSDDDLRRLRVLQDLDLLV 314 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 + + A L + S + +P FPL+G D + G+ PG +G L Sbjct: 315 ERSWLQQAR----LVGAPDSVWDRFRSRLQAMPQPEFPLSGKDAIAQGVRPGPGMGQWLK 370 Query: 387 HCKQEWINSSFQLSQEDLHHLL 408 + W+ + L Sbjct: 371 TGRDWWMAQGCLPDRSACLAYL 392 >gi|312865315|ref|ZP_07725543.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus downei F0415] gi|311099426|gb|EFQ57642.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus downei F0415] Length = 401 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 102/404 (25%), Positives = 183/404 (45%), Gaps = 26/404 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+N + D+DIAT+ P IF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIATSSYPQETKAIFERT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R K V F R + D RRDFT+NA + Sbjct: 68 GIEHGTVLVLENGREYEVTTFRTEDVYVDFRRPKSVSFVRSLEEDLKRRDFTVNAFALAK 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +VID GL DL + ++ +G A R ED LRI+R RF A + I+ VA Sbjct: 128 DAQVIDLFDGLKDLEAQVLRAVGKAQERFSEDALRIMRGLRFAASL-DFAIEDQTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQV 249 L+ +S ER + E +KLL A + + + + + D+ E+ L L Sbjct: 187 TYAPLLEKISVERSFIEFDKLLTAPHWKKGLEALIEIQAYDYL-PDLSKTEVGLRSLLTD 245 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + +F+ + + ++ +D +S L K S ++ L++ + NQ Sbjct: 246 FKDDFLFKTSEQAWAALCLSLNIKDCRSFLKKWKTSSHFQKTVSDLVAIYRLRMNQG--- 302 Query: 310 IPEIKKLFYLYGDKVMIAKLKIF----LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 K+ Y YG ++ + A+ ++ + H D +IH KK + Sbjct: 303 --HDKQSIYRYGKELAHLAENLRQGQGQAVDFDRIDHLDASL-------LIHHKKDIVVN 353 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G + + G+ PG +G IL + + +E + +R Sbjct: 354 GGILISQLGLKPGPALGEILDQIETAIVEGDLANEKEAILAFVR 397 >gi|315652418|ref|ZP_07905406.1| poly A polymerase [Eubacterium saburreum DSM 3986] gi|315485317|gb|EFU75711.1| poly A polymerase [Eubacterium saburreum DSM 3986] Length = 400 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 107/409 (26%), Positives = 183/409 (44%), Gaps = 24/409 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ I+ LN+ + VGG VRDSL+N D DI T LP + +IF KT Sbjct: 7 KNVKKIIESLNEHGFEGFAVGGCVRDSLLNKIPTDWDITTNALPADIKKIFKKT----FD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ ++ ++ITT R D TDGR+ V F+++ D RRDFT+NA+ Sbjct: 63 TGIAHGTVTVLMDGVGYEITTYRIDGDYTDGRHPDSVSFSKNLSEDLCRRDFTVNAMAYS 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q ++D G DL+ I+ +GDA R ED LR+LR RF + G I+ + A Sbjct: 123 PQKGIVDLYKGREDLQKGIIRAVGDAGKRFDEDALRMLRAIRFASQLG-FEIEDNTFEAI 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEISLDQLS 247 + K L +S ERI+ E+NKLL N I +Y G+ K I F + + D Sbjct: 182 KQKAKLLVNVSKERIFVELNKLLCGDFAQN-IKLIYTSGLCKYIGKEFSKLDKRVYDFYP 240 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 ++ W + + +++ + + + + + Sbjct: 241 GKFGNKKYMYW---------AVFLEDNIEAVKKILSELKSDNATKNNTYLLISELKHSLP 291 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI----LQVLSDIIHWKKPLF 363 S +I+ + G+++ +KI + N + ++L + ++ + Sbjct: 292 ESDEDIRWSLHRLGEELFYDYIKILKSDKRNTDILDRIDELENRCRRILKEHHAYEISML 351 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +TG D+++ GI G K+G +L + ++ I + L L +K I Sbjct: 352 DITGRDLIELGISKGPKIGEVLEYLLKKVIENPSLNDNIKLSKLTKKFI 400 >gi|168217734|ref|ZP_02643359.1| polyA polymerase family protein [Clostridium perfringens NCTC 8239] gi|182380205|gb|EDT77684.1| polyA polymerase family protein [Clostridium perfringens NCTC 8239] Length = 422 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 113/423 (26%), Positives = 188/423 (44%), Gaps = 31/423 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 6 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 61 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 62 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G DL+N+ I+ +GD R ED LR+LR RF K I+ + Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + +P ++ + G + + + + L D Sbjct: 181 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 240 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 299 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N +S +K L + V + L L + L++ D + +SDI Sbjct: 300 --NINNISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDI 357 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 358 LASKEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417 Query: 411 LIA 413 + Sbjct: 418 FYS 420 >gi|227890771|ref|ZP_04008576.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius ATCC 11741] gi|227867180|gb|EEJ74601.1| tRNA CCA-pyrophosphorylase [Lactobacillus salivarius ATCC 11741] Length = 404 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 106/407 (26%), Positives = 193/407 (47%), Gaps = 22/407 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + + ++ VGG+VRD+L+ L + D+DIA++ P+ + +IFSKT + T Sbjct: 13 ALPILEKIREVGFEAYFVGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFSKT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ ++ITT R++ D R KV F R + D RRD TINAL D + Sbjct: 69 VEHGTVMVLDHGTGYEITTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMDDK 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID GL DL+N I+ +G+ R ED LR++R RF + + ++ D A K Sbjct: 129 GKIIDLFDGLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQL-DFKVELDTFNAIKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL KNP + + ++K + D+ +++ Sbjct: 188 NSHLLEKIAIERIHVEWVKLLLGKNPKQGLQEFLDTELYKYC-----PLFADKYAELKSI 242 Query: 253 EQVFEWKIDSLLRFIVLISW---QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + ++K+++ L+S I ++ + + I ++I+ C QK Sbjct: 243 LEFSDFKLNTEEECWTLLSDVFKLKDTDISNLLRSWKSSNNIIKYVIAASLC--VQKIKD 300 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + +Y G ++++ +I + D + + + + G D Sbjct: 301 SKLDIETYYQNGIEIILTANQIAKIRGFG----MDDNELKINYDKLPIKSRKEMKINGKD 356 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 +V + G+ PGK +G IL ++E + + +E L +KL+ Sbjct: 357 LVQEAGVKPGKIMGEILNKLEKEIVFGNIINDKEILIENAKKLLEEK 403 >gi|306820496|ref|ZP_07454129.1| tRNA adenylyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551410|gb|EFM39368.1| tRNA adenylyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 443 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 110/440 (25%), Positives = 192/440 (43%), Gaps = 39/440 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D ++S+L + IVGG +RD L+ DIDI T LP ++ +F + YKV+ Sbjct: 6 DKKARKVISMLESKGYNAYIVGGCLRDILLGRKSHDIDITTDALPKEIIDVFYDS-YKVV 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYA 129 T YGTI +I +ITT RS+ DGR + + F +D KAD RRDFT+NA+ Sbjct: 65 ETGAKYGTITVIIDGSPVEITTFRSEQDYIDGRRPENISFEKDIKADLSRRDFTLNAMAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + + ID G DL ++ I+ +G+ R ED LR+LR RF A + + I+ + A Sbjct: 125 NDKDGFIDLFDGKEDLEDKIIRCVGNPRERFKEDKLRMLRAVRFAATF-DFKIEDETFEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + + + +S ERI +E++K+L + P AI+ + G+ K I + E+ Sbjct: 184 IKEFSQDINEISIERINAELSKMLLVQRPSQAIILLKKTGLLKNILPVIDEMYGFSQQNP 243 Query: 250 IEAEQVFEWKIDSL--------LRFIVLISWQDK----------------------KSIL 279 + +F +D L LR L K Sbjct: 244 YHEKDLFFHTMDVLDNVRDDIVLRLAALFHDSGKLYTKTVDENNIGHFYGHSELSFDIAR 303 Query: 280 SMAKKFSLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 K+ I + + + + ++ I+KL L+G + + +++ A + Sbjct: 304 DNLKRLRYSNNIIELVALLCKKHMIDTRNITKKGIRKLISLFGKENIYYLIELQRADSAS 363 Query: 339 NLTHQDTCF---ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 D + +VL++ + + G+DV G GK++G+IL + + + + Sbjct: 364 TTLGGDDTLKNKVDEVLAEEDVFSLKDMNIDGNDVKNLGYK-GKEIGDILRYLFDKVMEN 422 Query: 396 SFQLSQEDLHHLLRKLIASS 415 + L ++++ IA Sbjct: 423 PQFNEKTKLLEIIKREIADK 442 >gi|297529649|ref|YP_003670924.1| polynucleotide adenylyltransferase region [Geobacillus sp. C56-T3] gi|297252901|gb|ADI26347.1| Polynucleotide adenylyltransferase region [Geobacillus sp. C56-T3] Length = 404 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 178/401 (44%), Gaps = 18/401 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I+ L + ++ VGGAVRD L+ + D+DIAT+ LP+ VMR+F KT I Sbjct: 6 EQALGIIRQLKRHGYEAYFVGGAVRDLLIGRPIGDVDIATSALPEEVMRLFPKT----ID 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT+ ++ +++TT R+D D R + V F R + D RRDFT+NA+ D Sbjct: 62 VGSKHGTVVVVHEGTAYEVTTFRTDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAMD 121 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++G +ID GG + R I +G A R ED LR++R RF + G + D A Sbjct: 122 ERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLG-FALAEDTKSAI 180 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ + +S ER+ E+ KLL A+ + + G+F + L Q++ Sbjct: 181 VQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYL------PGLAAKEQLL 234 Query: 251 EAEQVFEWK--IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + F W R+ +L D K I + + LP ++ + + Sbjct: 235 RSAAAFRWPWLTKREERWALLCRALDVKDIRPFLRAWKLPNKVIDEAGAILAALDDVPRP 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++LF G + ++ + AL + + + + + K + G Sbjct: 295 EAWTNEQLFS-AGLERALSVEAVRAAL-CGAPSEPHHEELRRRFAALPIKTKGELAVNGK 352 Query: 369 DVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 DV+++ G P G V L + ++S + +E ++ L Sbjct: 353 DVIRWAGKPAGPWVKETLDAIWRAVVSSEVENEKERIYTWL 393 >gi|199598698|ref|ZP_03212112.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus rhamnosus HN001] gi|199590386|gb|EDY98478.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus rhamnosus HN001] Length = 398 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 100/404 (24%), Positives = 170/404 (42%), Gaps = 20/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I IL + ++ VGG+VRD+L+ L + D+DIA++ P+ + RIF +T + T Sbjct: 13 AIPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ +++TT R++ D R V F R D RRDFTINAL Sbjct: 69 IEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHD 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID GL DL+NR ++ +GD H R ED LR++R RF + G +I++ A Sbjct: 129 GTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLG-FHIEATTKAAIAA 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK +S ERI +E N+LL + + + +F L Q E Sbjct: 188 NAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAY--APKLAPHQAALQQFSEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 I S ++ + +S L K+ ++ + T + + Sbjct: 246 PNQAFTSIASGWTALIFMLKVAPESFLPAWKQ---SNDLMGLVDQAVTLLRKMPTPTAWD 302 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 Y G + ++ + + + + + K LTG D+++ Sbjct: 303 ----LYSAGSAAVAVVSEVAALMDHQFV----PASLTTAYEALPIHSKKTLALTGRDLIQ 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ PG +G IL + ++ S + L ++ Sbjct: 355 AGMRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEMSREPS 398 >gi|110800095|ref|YP_694495.1| polyA polymerase family protein [Clostridium perfringens ATCC 13124] gi|110674742|gb|ABG83729.1| polyA polymerase family protein [Clostridium perfringens ATCC 13124] Length = 424 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 113/423 (26%), Positives = 189/423 (44%), Gaps = 31/423 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 8 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 63 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 64 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 123 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G +DL+N+ I+ +GD R ED LR+LR RF K I+ + Sbjct: 124 YLGFKDCFNGKDDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 182 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + +P ++ + G + + + + L D Sbjct: 183 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 242 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 243 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 301 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N +S +K L + V + L L + L++ D + +SDI Sbjct: 302 --NINNISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDI 359 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 360 LASKEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 419 Query: 411 LIA 413 + Sbjct: 420 FYS 422 >gi|291529448|emb|CBK95034.1| uncharacterized domain HDIG [Eubacterium rectale M104/1] Length = 451 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 107/445 (24%), Positives = 188/445 (42%), Gaps = 59/445 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ +VGG VRDS++ V D DI T+ PD + ++FS T K+I T Sbjct: 12 AAAIIDTLQSNGFEAYLVGGCVRDSILKRPVHDWDITTSATPDEMKKVFSDT--KIIETG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ +++ TT R D +DGR+ V FT+ D RRDFTINA+ + + Sbjct: 70 IKHGTLTILSVDGFYECTTYRIDGAYSDGRHPDMVRFTKSLAEDLKRRDFTINAMAYNDK 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID GG DL + I+ +G+ R ED LRI+R RF A E +++ +A+ + Sbjct: 130 EGLIDLFGGRLDLMDHVIRCVGNPEDRFKEDALRIMRALRFAAQL-EFDLEMKTKIAAFQ 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S+ERI SE K+L I + I +++++ + + Sbjct: 189 MSDTLTKVSAERINSEFCKILTQPMGSQVINNYKE--IIAVFIPEIRDMFDFEQNNPYHM 246 Query: 253 EQVFEWKIDSLLRFIVLI--------------------SWQD---------------KKS 277 V++ I+ L R + + S+QD + Sbjct: 247 FNVWDHTIEVLARAALFMDPNNLALTLAAFFHDIGKPHSYQDGPDGIRHFYSHAAKSAEM 306 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 + S+ ++ IR +++ + IK+ + + LK L Y Sbjct: 307 VDSIMRRMRFNNSIREQVVTLVKYHDADIKPEAKYIKRWLNKLDSESL---LKCLFMLKY 363 Query: 338 NNLTHQDTCFILQVLSDIIH--------------WKKPLFPLTGDDVVKYGIPPGKKVGN 383 +++ Q + L I H + + G+D++ G+ PGK++G Sbjct: 364 ADISGQAIKGRTERLKVINHLFAVRCDILKQQACFSLKDLAVNGNDLIAAGMKPGKEIGA 423 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLL 408 IL + +N ++ L + Sbjct: 424 ILNQMLELVLNDECANDKDALFKAV 448 >gi|320538282|ref|ZP_08038167.1| uncharacterized domain HDIG [Treponema phagedenis F0421] gi|320144858|gb|EFW36589.1| uncharacterized domain HDIG [Treponema phagedenis F0421] Length = 453 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 100/444 (22%), Positives = 181/444 (40%), Gaps = 48/444 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L I ++ + +VGG+VRD L+ + D D+AT P++V ++F T IPT Sbjct: 12 LAEIAAVFTNAGFQVYLVGGSVRDYLLKKAAHDWDLATDASPEKVRKLFKHT----IPTG 67 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD-Q 131 I +GTI I+ + K + TT R++ TD R+ V + R + D RRDFTINA Sbjct: 68 IKHGTITILYKGKSIECTTFRTEADYTDSRHPDAVNYARSIEEDLSRRDFTINAFAVKLP 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G++ D G+ DLR + I+ +G+ R ED LR +R RF A + +I+ + L A Sbjct: 128 EGRITDLFNGMRDLRKKIIRTVGNPLERFSEDGLRPIRAIRFAAQL-DFSIEPETLKAIP 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + +K +S ER E +K+L+ P AI M+ GI +E ++ + + Sbjct: 187 LSIAKIKTISVERFQDEFSKILQTDKPSVAIRLMHESGILQEFIPELSACAGVEQKGFHR 246 Query: 252 AEQVFE--------WKIDSLLRFIVLISWQDKKSI----------------------LSM 281 + K +R L K ++ + Sbjct: 247 FDVFTHSLLVCDACPKEKLQVRLAGLFHDIGKPAMRKKTAHGDYTFYRHEAVSVELTEKI 306 Query: 282 AKKFSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 ++ P +I + + ++ + +++ G + + + A + Sbjct: 307 LRRLRYPNKIIEQVCHLIGNHMFHYEENWTDAAVRRFIVRVGKEHIDDLFDLRQADTFGL 366 Query: 340 LTHQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + T I ++L + + G +++ GIP G +G IL Q Sbjct: 367 AGQKVQPFHLAEFTAHIDKILKEDSALSIKNLAIGGKELIALGIPAGPMLGAILQELFQT 426 Query: 392 WINSSFQLSQEDLHHLLRKLIASS 415 ++ Q +++ L + L Sbjct: 427 VLDDPAQNTKDSLLKIAEGLYRQK 450 >gi|319745265|gb|EFV97583.1| polyA polymerase family protein [Streptococcus agalactiae ATCC 13813] Length = 403 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 190/402 (47%), Gaps = 18/402 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + K ++ VGG+VRD L++ + D+DIAT+ P+ +IF +T + Sbjct: 14 ALPILKKIKKAGYEAYFVGGSVRDVLLDRPIHDVDIATSSYPEETKQIFKRT----VDVG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ + D R +V F R + D RRDFT+NA ++ Sbjct: 70 IEHGTVLVLEKGGEYEITTFRTEEVYVDYRRPSQVNFVRSLEEDLKRRDFTVNAFALNED 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL+DL N ++ +G A R ED LRI+R RF A +I++ A K Sbjct: 130 GEVIDLFHGLDDLDNHLLRAVGLASERFNEDALRIMRGLRFSASLN-FDIETTTFEAMKK 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A ++ + + F + L +E+ L ++ Sbjct: 189 HAPLLEKISVERSFIEFDKLLLAPYWRKGMLALIDSYAFNYLPCLKNRELQLSAFLSQLD 248 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + +FE + + LI + + + KK+ + + + ++ + + Sbjct: 249 KDFLFETSEQA---WASLILSMEVEHTKTFLKKWKTSTHFQKDVEHIVDVYRIREQMGLT 305 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y YG ++ I A D I Q+ S++ + + G ++ Sbjct: 306 --KEHLYRYGKTIIKQAEGIRKARGLMV----DFEKIEQLDSELAIHDRHEIVVNGGTLI 359 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 K GI PG ++G+I+ + + +E + H +++ + Sbjct: 360 KKLGIKPGPQMGDIISQIELAIVLGQLINEEEAILHFVKQYL 401 >gi|18309004|ref|NP_560938.1| polyA polymerase family protein [Clostridium perfringens str. 13] gi|18143679|dbj|BAB79728.1| probable polynucleotide adenylyltransferase [Clostridium perfringens str. 13] Length = 424 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 113/423 (26%), Positives = 188/423 (44%), Gaps = 31/423 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 8 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 63 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 64 GIKHGTVTVLIDKNPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 123 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G DL+N+ I+ +GD R ED LR+LR RF K I+ + Sbjct: 124 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 182 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + +P ++ + G + + + + L D Sbjct: 183 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 242 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 243 DIHDTYGLINSLPKKLHIRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 301 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N +S +K L + V + L L + L++ D + +SDI Sbjct: 302 --NINNISCNMTRKKLKLLINAVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDI 359 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 360 LASKEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 419 Query: 411 LIA 413 + Sbjct: 420 FYS 422 >gi|169343380|ref|ZP_02864384.1| polyA polymerase family protein [Clostridium perfringens C str. JGS1495] gi|169298466|gb|EDS80552.1| polyA polymerase family protein [Clostridium perfringens C str. JGS1495] Length = 422 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 112/423 (26%), Positives = 188/423 (44%), Gaps = 31/423 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 6 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 61 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 62 GIKHGTVTVLIDKNSYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G DL+N+ I+ +G+ R ED LR+LR RF K I+ + Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGNPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + +P ++ + G + + + + L D Sbjct: 181 KNFKLIKNISMERIQSEFTKIILSNDPDRGLMLLRKLGFSDFLVEEFKNLKLINCYDLYD 240 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 299 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N +S +K L + V + L L + L++ D + +SDI Sbjct: 300 --NINNISCNMTRKKLKLLINAVGTENIFNLLDLQKSYLSYMDEYDTECIDILKNRVSDI 357 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 358 LASKEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417 Query: 411 LIA 413 + Sbjct: 418 FYS 420 >gi|289550762|ref|YP_003471666.1| tRNA nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315658258|ref|ZP_07911130.1| polyA polymerase family protein [Staphylococcus lugdunensis M23590] gi|289180294|gb|ADC87539.1| tRNA nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315496587|gb|EFU84910.1| polyA polymerase family protein [Staphylococcus lugdunensis M23590] Length = 400 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 103/409 (25%), Positives = 186/409 (45%), Gaps = 26/409 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L+ + + ++ VGG+VRD +M + DIDI T+ PD + IF T IP Sbjct: 7 EQAKPLLTKIQQHGYEAYFVGGSVRDYIMGRDIHDIDITTSATPDEIETIFQHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 ++GTI ++ + +++TT R++ TD R +V F R+ D RRDFT+NA+ D Sbjct: 63 IGKAHGTINVVYGQHNYEVTTFRAEEEYTDHRRPSEVTFVRNLYQDVERRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++ DY GG D++ I+ +G+ H R ED LRILR RF A G ID+ +A Sbjct: 123 KSYQIYDYFGGQADIKQHIIRTVGEPHERFEEDALRILRGLRFEAQLG-FTIDTTTFLAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + LS ERI E+ KL++ ++ HM G+F I + I +++ ++ Sbjct: 182 QQRVADTAYLSIERIIVELKKLIQGHYVSSSYKHMIQLGLFNHI-PFFESIDMNKF--IV 238 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL-ISFFNCNFNQKTLS 309 FE I SL L + + S+ S + + + K S Sbjct: 239 TEPMSFELWIASL-----LFATNSQFSLTS----LKISNNEKQKIKQLLSLLQLLNKIKS 289 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-----QDTCFILQVLSDIIHWKKPLFP 364 +++ L Y YG ++ L ++ + I + +I ++ Sbjct: 290 KQDLRLLVYDYGSHSLLEILNHRQMFQDQHIKVGNPVIINPEVIHDISQSLIINQRQDIA 349 Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++G D++ + G + +L + +N++ Q ++E + ++K + Sbjct: 350 ISGYDLINFFNKKRGPWIKTVLRMIEVAIVNNNVQNNKEQILKWVKKHV 398 >gi|56808914|ref|ZP_00366623.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus pyogenes M49 591] Length = 402 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 104/404 (25%), Positives = 188/404 (46%), Gaps = 18/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+ + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEATTFEAMRS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER ++E +KLL A + I M + + L QE L+ L ++ Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + ++ ++ +D KS L K + + + ++ ++ S Sbjct: 248 DNFTFSDHHQAWTYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSFE 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG K+ + L D I + ++ K L G ++ Sbjct: 305 KLD--IYQYGKKMA----SLVEDLRKAQSLSVDMDHINTLDQALVIHDKHDIVLNGSHLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K +G+ PG ++G +L + + + +R+ +A+ Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELAT 402 >gi|313902546|ref|ZP_07835947.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermaerobacter subterraneus DSM 13965] gi|313467232|gb|EFR62745.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermaerobacter subterraneus DSM 13965] Length = 610 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 110/445 (24%), Positives = 188/445 (42%), Gaps = 51/445 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL L++ + +VGG VRD LM +D D+AT PD V R+F +T IPT I Sbjct: 161 EILQRLDQHGYGAFLVGGCVRDLLMARPPKDWDVATAARPDEVRRLFPRT----IPTGIE 216 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ + R ++TT R + +D R+ +V FTRD +AD RRD TINA+ D QG+ Sbjct: 217 HGTVTVRLRGMSVEVTTFRQEAGYSDHRHPDRVEFTRDLRADLERRDLTINAMALDHQGR 276 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D +GGL+DL ++ +GD R ED LR+LR RF A G + ++ A + Sbjct: 277 LHDPLGGLDDLEQGLVRAVGDPEERFREDALRLLRVVRFAARLGYR-VEPRTGAALARCA 335 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 ++ +S ERI E+ LL + P + + G+ + I+ ++ E +D V A Sbjct: 336 SLIRHVSWERIREEMAGLLTSPRPAWGLELLRTSGLLEPIWPELLE-GVDVPQNVHHAYT 394 Query: 255 VFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMAKK 284 V+E LR L+ K M ++ Sbjct: 395 VWEHNLLACEYTPPVLRLRLAGLLHDVGKPRTVSVDAQGERHFYHHEVVGAQMARDMLRR 454 Query: 285 FSLPREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 E ++ + ++ I++L G + + + +A + T Sbjct: 455 LRFDNETVQHVVHLVRHHLALHHYPGMTDAAIRRLIQRIGFDYLEDLIILRVADRAASGT 514 Query: 342 HQDTC---------FILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQE 391 + + ++L + + G DV+ G+ PG +G IL ++ Sbjct: 515 KRAPISRGAYRLLTRMEKILEQDAAFSLHDLAVDGHDVMAATGLGPGPAIGWILQQLLED 574 Query: 392 WINSSFQLSQEDLHHLLRKLIASSQ 416 ++ + +E L +L ++ Sbjct: 575 VLDEPARNRREWLLERAAQLRGEAE 599 >gi|312622082|ref|YP_004023695.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor kronotskyensis 2002] gi|312202549|gb|ADQ45876.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor kronotskyensis 2002] Length = 394 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 105/396 (26%), Positives = 185/396 (46%), Gaps = 18/396 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ LLN+ K+ +VGG +RD L++ QD DIAT P+ V+ +F KT IPT Sbjct: 7 EPMKVIKLLNQHGFKAYLVGGCLRDYLLSKEPQDFDIATDAKPEDVIHLFEKT----IPT 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 63 GIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHPD 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++ A Sbjct: 123 EGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQL-SFVIENKTFEALKS 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S ERI E++K LE+KN + +Y + I + +I L + + Sbjct: 182 LKHLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYL----YLSQV 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + F + +D + + + ++ F + CN+ S + Sbjct: 238 DFDFIPTKFKVPAFFACL--KDGILVEKLMRDLKFEKKKINFAVKL--CNYLTMECSQDK 293 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + K + +K + L L + H+ + + K L+G D++ Sbjct: 294 LVKKIFFEEEKEVEEILTTISILKSD---HRILQTFNDLKRENKLIHKKDVQLSGKDLLV 350 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ G+ +G +L + + + + S++++ + + Sbjct: 351 LGLR-GEMIGKVLNTVYEYVLENPEKNSKDEILNYV 385 >gi|21910123|ref|NP_664391.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS315] gi|28896178|ref|NP_802528.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes SSI-1] gi|71903318|ref|YP_280121.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS6180] gi|94988359|ref|YP_596460.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS9429] gi|94992241|ref|YP_600340.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS2096] gi|73619870|sp|Q8K7W5|CCA_STRP3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|123640057|sp|Q48U40|CCA_STRPM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233881|sp|Q1JCB2|CCA_STRPB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233882|sp|Q1JM96|CCA_STRPC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|21904315|gb|AAM79194.1| putative poly(A) polymerase [Streptococcus pyogenes MGAS315] gi|28811429|dbj|BAC64361.1| putative poly(A) polymerase [Streptococcus pyogenes SSI-1] gi|71802413|gb|AAX71766.1| poly(A) polymerase [Streptococcus pyogenes MGAS6180] gi|94541867|gb|ABF31916.1| tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS9429] gi|94545749|gb|ABF35796.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS2096] Length = 402 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 186/404 (46%), Gaps = 18/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 129 GQVIDKFRGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEAATFEAMRS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER ++E +KLL A + I M + + L QE L+ L ++ Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + ++ ++ +D KS L K + + + ++ ++ S Sbjct: 248 DNFTFSDHHQAWAYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSFE 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG ++ + L D I + + K L G ++ Sbjct: 305 KLD--IYQYGKEMA----SLVEGLRKAQSLSVDMDHIEALDQALAIHNKYDIVLNGSHLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K +G+ PG ++G +L + + + +R+ +A+ Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELAT 402 >gi|168210477|ref|ZP_02636102.1| polyA polymerase family protein [Clostridium perfringens B str. ATCC 3626] gi|170711451|gb|EDT23633.1| polyA polymerase family protein [Clostridium perfringens B str. ATCC 3626] Length = 422 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 113/421 (26%), Positives = 189/421 (44%), Gaps = 31/421 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL N ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 6 NVQYILEKFNSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 61 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 62 GIKHGTVTVLIDKTPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G DL+N+ I+ +GD R ED LR+LR RF K I+ + Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + +P ++ + N G + + + + + D Sbjct: 181 KNFKLVKNISMERIQSEFTKIILSNDPDRGLMLLRNLGFSDFLVKEFKNLKIINCYDLYD 240 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 299 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N ++S +K L + V + L L + L++ D + +SDI Sbjct: 300 --NINSISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDI 357 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 358 LASKEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417 Query: 411 L 411 Sbjct: 418 F 418 >gi|323351652|ref|ZP_08087306.1| polyA polymerase family protein [Streptococcus sanguinis VMC66] gi|322122138|gb|EFX93864.1| polyA polymerase family protein [Streptococcus sanguinis VMC66] Length = 399 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 182/400 (45%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNHEYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL NR ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFQGLDDLENRILQAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LASDFRFSA-SEQAWSALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + Y + +L+ L D I + + + K + G ++ Sbjct: 304 KRDCYDYDIDLLIQAEELREAQGLAV------DFSAIQNLDASLTIHSKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +G PG K+G IL + ++ E ++ + + Sbjct: 358 QDFGFKPGPKLGQILKELEYAIVDGHLPNKLEAIYAYIEE 397 >gi|126700083|ref|YP_001088980.1| putative poly(A) polymerase [Clostridium difficile 630] gi|115251520|emb|CAJ69353.1| putative tRNA-nucleotidyltransferase/Poly(A) polymerase family member [Clostridium difficile] Length = 448 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 107/432 (24%), Positives = 177/432 (40%), Gaps = 50/432 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F KT IPT I + Sbjct: 16 IIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQH 71 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ + + + Sbjct: 72 GTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSKTGL 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G D++N+ I+ +G+ R ED LR+LR RF A K I + K Sbjct: 132 VDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNFK-IAEGTKQSIHKKAD 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 +K +S ERI +E NK+L + + + + + G+ K I ++ E+ V Sbjct: 191 LIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPYHIYDV 248 Query: 256 FEWKIDSL--------LRFIVLISWQDK----------------------KSILSMAKKF 285 + + + L+ +L K K + K+ Sbjct: 249 QKHTLIATEVIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKKILKRL 308 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL-KIFLALHYNNLTHQD 344 ++ + + IKKL D + L K+ A Sbjct: 309 KYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVGLFEDLIKVNWADTLAKNPKYA 368 Query: 345 TCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 IL ++ +K + + G D++ GI PGK +G IL + IN Sbjct: 369 KQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGYILNKMLEIVIN 428 Query: 395 SSFQLSQEDLHH 406 + +E L Sbjct: 429 NPELNEKEILKE 440 >gi|301300784|ref|ZP_07206968.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851634|gb|EFK79334.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 404 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 104/407 (25%), Positives = 191/407 (46%), Gaps = 22/407 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + + ++ VGG+VRD+L+ L + D+DIA++ P+ + +IFSKT + T Sbjct: 13 ALPILEKIREAGFEAYFVGGSVRDTLLGLPIHDVDIASSAYPEEIKQIFSKT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ ++ITT R++ D R KV F R + D RRD TINAL D + Sbjct: 69 VEHGTVMVLDHGTGYEITTFRTESTYQDYRRPDKVEFVRSLEEDLKRRDLTINALAMDDK 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID GL DL+N I+ +G+ R ED LR++R RF + + ++ D A K Sbjct: 129 GKIIDLFDGLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQL-DFKVELDTFNAIKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL K P + + ++K + D+ +++ Sbjct: 188 NSHLLEKIAIERIHVEWVKLLLGKKPKQGLQEFLDTELYKYC-----PLFTDKYAELKSI 242 Query: 253 EQVFEWKIDSLLRFIVLISW---QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + ++K+++ L+S I ++ + + I ++I+ C QK Sbjct: 243 LEFPDFKLNTEEECWTLLSDVFKLKDTDISNLLRSWKSSNNIIKYVIAASLC--VQKIKD 300 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + +Y G ++++ +I + D + + + + G D Sbjct: 301 SKLDIETYYQNGIEIILTANQIAKIRGFG----MDDNELKINYDKLPIKSRKEMKINGKD 356 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 +V + G PGK +G IL ++E + + +E L ++L+ Sbjct: 357 LVQEAGAKPGKIMGEILNKLEKEIVFGNIINDKEILIENAKELLEEK 403 >gi|266620762|ref|ZP_06113697.1| poly A polymerase [Clostridium hathewayi DSM 13479] gi|288867623|gb|EFC99921.1| poly A polymerase [Clostridium hathewayi DSM 13479] Length = 410 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 102/408 (25%), Positives = 184/408 (45%), Gaps = 25/408 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +D I+ LN+ ++ +VGG VRDSL+ +D DI T+ P V IFS+T I Sbjct: 9 ADAEQIIEKLNEHGFEAYVVGGCVRDSLLGKEPEDWDITTSARPGEVKSIFSRT----ID 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ ++ +++TT R D DGR+ K V FT D RRDFTINA+ + Sbjct: 65 TGIQHGTVTVMLNRQGYEVTTYRVDGEYEDGRHPKSVDFTTSLLEDLKRRDFTINAMAYN 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D GG+ DL NR I+ +G A +R ED LRILR RF A + I+ + A Sbjct: 125 SREGLVDAFGGIEDLENRVIRCVGSAVNRFTEDALRILRAVRFSAQL-DFRIEDETYEAI 183 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEISLDQLS 247 L+ +S ERI +E+ KLL + +P + + + G + + F ++ D+L Sbjct: 184 SIIAPNLEKVSKERIATELTKLLLSSHPEK-MKRVSDTGASRYVSEPFCRAAALNKDELR 242 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 + V +R+ L+ + ++ ++ + + + + + + Sbjct: 243 PLGLLPAV------KYMRWAGLLRREQGETAAAILRDLKMDCDTMDKVKILVSRWRIPIS 296 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP------ 361 P I+++ ++ L F + L + V + ++ Sbjct: 297 AEKPAIRRVMNQIPPD-LLDSLLCFQEVFAAELGEGYRETLKAVKTLAEEIRRDGDPVNL 355 Query: 362 -LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G D++ G+ PG +G L ++ + ++E L + Sbjct: 356 KELAVDGRDLMAAGMKPGPALGKTLNALMEQVLEQPECNTREYLLNAA 403 >gi|332523718|ref|ZP_08399970.1| putative tRNA adenylyltransferase [Streptococcus porcinus str. Jelinkova 176] gi|332314982|gb|EGJ27967.1| putative tRNA adenylyltransferase [Streptococcus porcinus str. Jelinkova 176] Length = 403 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 178/397 (44%), Gaps = 16/397 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILKKIKEAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKAIFTRT----VDLG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLEGGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID GL+DL+ R ++ +G A R ED LRI+R FRF A + ++ A + Sbjct: 129 GDIIDKFNGLDDLKARRLRAVGKAQDRFEEDALRIMRGFRFAATL-DFTVEETTFCAMTE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S ERI+ E +KLL + + + + N ++ FL L +++ Sbjct: 188 QAHLLTKISVERIFIEFDKLLMSNHWRCGLELLVNAQAYQ--FLPDLAGQKTNLQKMMTN 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 Q +S + LI D + + KK+ E + + + ++ + + Sbjct: 246 LQATFNFTESAQAWASLIISLDISNSKAFLKKWKTSNEFQKKVDHIISLYRLRQKQELDK 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV- 371 Y ++ +L+ AL N QD L + K + G ++ Sbjct: 306 WSLYSYGKEIAILCEELRQAQALEVNFSRIQDLDEALAIHD------KREIVVNGRYLMQ 359 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ G ++G L H ++ + + + Sbjct: 360 ELGMSAGPELGKTLNHIEEAIVRGQLINDLPAIRDYI 396 >gi|149183107|ref|ZP_01861558.1| tRNA nucleotidyltransferase [Bacillus sp. SG-1] gi|148849184|gb|EDL63383.1| tRNA nucleotidyltransferase [Bacillus sp. SG-1] Length = 395 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 101/397 (25%), Positives = 185/397 (46%), Gaps = 21/397 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L + ++ VGGAVRD L+N DIDIAT+ LP V +F KT I Sbjct: 11 ALPVLEKLEEAGYQAYFVGGAVRDLLLNRPTNDIDIATSALPQEVKGVFPKT----IDVG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I + ++ITT RS+ D R + V F + K D RRDFTINA+ D+ Sbjct: 67 IEHGTVVVIYNETPYEITTFRSEEEYKDHRRPESVTFIKSLKEDLQRRDFTINAIAMDRS 126 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G + D GG D++ +TI+ +G A R ED LR++R RF A G K +++D + + Sbjct: 127 GTIHDPFGGEVDIKAKTIRTVGSADERFKEDALRMMRAVRFMAQLGFK-MENDTFESIKR 185 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK ++ ER+ +E KLL + + + G+++ ++ + + + Sbjct: 186 NGNTLKYIAVERLSAEFEKLLGGRFKKASFESLSETGLYQ-FLPGLKANVVTSAAGMP-- 242 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + + +V +S DK S+ + + LP + ++ +F + IP Sbjct: 243 --INHLSTEQMWIMLVHLSKGDK----SILEHWRLPSKKIKYISK--GVSFLSDRMKIPW 294 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + YL G + + +++ + + D + ++ + + LTG+D++ Sbjct: 295 DQYSLYLAGISIALDVQEVYHVV--DPHESTDLQDLKKMYEKLPIKDRGELALTGNDLMG 352 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G G + +I+ ++ I + + L Sbjct: 353 WTGKSGGPWIRDIIEKTEKAVIQGEVSNQKTTIREWL 389 >gi|254439635|ref|ZP_05053129.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Octadecabacter antarcticus 307] gi|198255081|gb|EDY79395.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Octadecabacter antarcticus 307] Length = 384 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 123/401 (30%), Positives = 192/401 (47%), Gaps = 26/401 (6%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 W + + +L + VGG VR++L+++ V D+D+AT PD VM++ + Sbjct: 7 WLNTDASKAVTGMLVDAGYEVYFVGGCVRNALVDMHVADLDLATNARPDVVMKLATDAGL 66 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 KV+PT I +GT+ ++ + ++ITT R D+ TDGR A V F+ + D++RRDFT+NALY Sbjct: 67 KVVPTGIDHGTVTVVADHRPYEITTFRKDVETDGRRAVVAFSDGLEDDAVRRDFTMNALY 126 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG 186 G VID VGG++DL R ++FI DA RI EDYLRILRFFRF+A +G+ + +D+DG Sbjct: 127 CAPDGTVIDPVGGISDLHARHVRFINDADMRIREDYLRILRFFRFYAWFGDPEQGLDADG 186 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A GL+ L+ ER+ +EI K L A NP A+ M G+ + + L Sbjct: 187 LAACAGNLDGLEGLAKERVQTEILKTLLAPNPAPAMASMAICGVLLRLLPGAD---VSAL 243 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + ++ ++ R + + + L + Sbjct: 244 APLVHLQEQLGRPAHLHTRLAAINPG-------DVTAQLRLSKADTTKF-----SRIRDG 291 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 S + L Y G + I L + +AL LT D + +P+ Sbjct: 292 ASSGIKAAPLGYALGADLAIEALMLRVALSGGILTKID-------IDAAQFGGAQTYPVK 344 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 D++ G +G L + EWI S F L++ DL + Sbjct: 345 AKDLMSA--YAGAALGARLKQLESEWIASGFTLTKPDLLAI 383 >gi|242010004|ref|XP_002425767.1| tRNA-nucleotidyltransferase 1, putative [Pediculus humanus corporis] gi|212509693|gb|EEB13029.1| tRNA-nucleotidyltransferase 1, putative [Pediculus humanus corporis] Length = 469 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 207/409 (50%), Gaps = 32/409 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 S++ + ++ + + IVGGAVRD L+ +D+D ATT PD + ++F + ++I Sbjct: 72 SSEVQTLKNMFIENNHEIRIVGGAVRDLLLGKKPEDLDFATTATPDEMKKMFESNKVRMI 131 Query: 72 P-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI + +K ++ITTLR D ITDGR+A+V FT++W D+ RRD TINA+Y D Sbjct: 132 NMNGERHGTITVRLNEKNYEITTLRIDTITDGRHAEVEFTKNWFCDANRRDLTINAMYLD 191 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDGLV 188 G + DY+ T F+G+A RI EDYLRILR+FRF+ ++ N + + L Sbjct: 192 FNGTLYDYL---------TSTFVGEASLRIQEDYLRILRYFRFYGKIAKEPDNHEEEILQ 242 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLS 247 + + KGL +S ERIW+EI+K+L K + + + I F +L +L Sbjct: 243 SIKENAKGLVTISGERIWTEISKILMGKFVYEILSKIQMLNVGSYIGFP--SSCNLSELK 300 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA-KKFSLPREIRYFLISFFNCNFNQK 306 +V E + FE+ + F L Q++ + + K + +++ YF+I N Q+ Sbjct: 301 RVTENLKKFEFSAKPMTIFSSLFHTQEEITDFYLKIKASTFDKQLGYFIILNRNDKKEQE 360 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 ++ + + L + + L++ L YN +++ ++ +W+ P FPL Sbjct: 361 SIKVYQRYILTEQNSRQALTFSLEL---LKYNG--------NVELHKELENWRIPKFPLN 409 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G+ + G+ G +L K+ WI F + L + +++ Sbjct: 410 GNMLKSKGVN-----GKVLSELKEIWIKEDFNIDNNKLLEFVPEIMNEK 453 >gi|328948084|ref|YP_004365421.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Treponema succinifaciens DSM 2489] gi|328448408|gb|AEB14124.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Treponema succinifaciens DSM 2489] Length = 467 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 106/459 (23%), Positives = 181/459 (39%), Gaps = 61/459 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 LI + + + KS +VGGAVRD LM + D DIAT P++VM+IF V+P Sbjct: 11 EKLIKVSKIFSDNGFKSYLVGGAVRDMLMGKTCHDYDIATNATPEQVMKIFRN----VVP 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ I + TT R++ +DGR+ KV + + D RRDFT+NA+ A+ Sbjct: 67 TGIAHGTVTIHIFGLELETTTFRTETDYSDGRHPDKVKYAETIEEDLSRRDFTMNAIAAE 126 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 GK+ D G D++ + I+ +GD R ED LR +R RF G I+ A Sbjct: 127 LSTGKITDPFDGQKDIQRKIIRTVGDPFERFSEDGLRPVRAIRFSGQLG-FEIEEKTFDA 185 Query: 190 SIKAK--KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--------- 238 + K K ++ +S+ER E K+L+ + P + + G+ K Sbjct: 186 ISQEKILKKVEGISTERFRDEFCKILKTEKPSVGLKLLEQTGMLKIFIPQFSVCRNCLQQ 245 Query: 239 QEISLDQLSQVIEAEQVFE--WKIDSLLRFIVL--------------------ISWQDKK 276 E + + K + +R I + + Sbjct: 246 DERGFHEFDVADHILYACDGCPKENLTVRLAAFYHDIGKPESKTIEIVNGKERIHFHGHE 305 Query: 277 SILSMAKK-----FSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKL 329 I + K + + + + + + +++ G + + Sbjct: 306 QISAEKAKASMASLKFSNDEIRKVSHLVKEHMFHYESSWTDSAVRRFIIRVGAENLDNLF 365 Query: 330 KIFLALHYN-------------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376 + LA Y NL + I +++++ + G D++ GIP Sbjct: 366 LLRLADIYGMHRVPLQQNSPSWNLLVELKKRIEKLMAENSALSLKDLKVNGKDLMSEGIP 425 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 GK +G IL + +S +E L L +KL + Sbjct: 426 SGKIMGKILNELFETVTDSPEMNDKEKLIGLAKKLFSEK 464 >gi|293382998|ref|ZP_06628916.1| poly A polymerase [Enterococcus faecalis R712] gi|293389513|ref|ZP_06633970.1| poly A polymerase [Enterococcus faecalis S613] gi|312907531|ref|ZP_07766522.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis DAPTO 512] gi|312910149|ref|ZP_07768996.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis DAPTO 516] gi|291079663|gb|EFE17027.1| poly A polymerase [Enterococcus faecalis R712] gi|291081130|gb|EFE18093.1| poly A polymerase [Enterococcus faecalis S613] gi|310626559|gb|EFQ09842.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis DAPTO 512] gi|311289422|gb|EFQ67978.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis DAPTO 516] Length = 406 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 182/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ +++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PELREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|56420716|ref|YP_148034.1| tRNA CCA-pyrophosphorylase [Geobacillus kaustophilus HTA426] gi|73619775|sp|Q5KXX0|CCA_GEOKA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|56380558|dbj|BAD76466.1| tRNA nucleotidyltransferase [Geobacillus kaustophilus HTA426] Length = 404 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 179/401 (44%), Gaps = 18/401 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I+ L + ++ VGGAVRD L+ ++ D+DIAT+ LP+ VMR+F KT I Sbjct: 6 EQALGIIRQLKRHGYEAYFVGGAVRDLLIGRAIGDVDIATSALPEEVMRLFPKT----ID 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT+ ++ +++TT R+D D R + V F R + D RRDFT+NA+ D Sbjct: 62 VGSKHGTVVVVHEGTAYEVTTFRTDGDYEDHRRPESVTFVRSLEEDLKRRDFTMNAIAMD 121 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++G +ID GG + R I +G A R ED LR++R RF + G + D A Sbjct: 122 ERGTIIDPFGGQEAIERRLICTVGAADERFREDALRMMRAVRFVSQLG-FALSEDTKSAI 180 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ + +S ER+ E+ KLL A+ + + G+F + L Q++ Sbjct: 181 VQNAPLMAHISVERMTMEMEKLLAGPFVAEALPLLADTGLFAYL------PGLAAKVQLL 234 Query: 251 EAEQVFEWK--IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + F W R+ +L D K I + + LP ++ + + Sbjct: 235 RSAAAFRWPWLTKREERWALLCRALDVKDIRPFLRAWKLPNKVIDEAGAILAALDDVPRP 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++LF G + ++ + AL + + + + + K + G Sbjct: 295 EEWTNEQLFS-AGLERALSVEAVRAAL-CGAPSEPHHEELRRRFAALPIKTKGELAVNGK 352 Query: 369 DVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 DV+++ G P G V L + ++S + +E ++ L Sbjct: 353 DVIRWAGKPAGPWVKETLDAIWRAVVSSEVENEKERIYAWL 393 >gi|295426284|ref|ZP_06818944.1| poly A polymerase [Lactobacillus amylolyticus DSM 11664] gi|295064023|gb|EFG54971.1| poly A polymerase [Lactobacillus amylolyticus DSM 11664] Length = 398 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 100/400 (25%), Positives = 182/400 (45%), Gaps = 20/400 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D + +L +L + ++ VGG+VRD L+ + D+DIAT+ P+ V F+KT I T Sbjct: 13 DAMPVLKILEQAGYEAYFVGGSVRDVLLGRQIHDVDIATSAYPEEVKEQFAKT----IDT 68 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R++ D R V F ++ D RRDFTINAL + Sbjct: 69 GIKHGTVTVLYNGNSYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMNT 128 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GL+DL+ + I+ +GD R ED LR++R RF + + +++ + A Sbjct: 129 DGQILDLFDGLSDLKKKVIRAVGDPEKRFHEDALRMMRAVRFMSQL-KFDLEENTQKAIE 187 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + LK +S ERI E K+ N A + + +++ D S + LS + Sbjct: 188 DHHQLLKKISVERIRDEFVKMGLGSNAREAFQVFLDTKLSEDV-PDFAGKS-ELLSVFPQ 245 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + I+L+ Q+ K + + K + ++SFF+ + Sbjct: 246 LQFSPALETSLWSIIIILLKIQNDKIGTFMRDWKNSNAMTNEVEQIVSFFDVLSDHVPGD 305 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + G K ++ + + L D+ ++ + + G Sbjct: 306 YE-----LFEIGKKNLLNTIDVAHILG----QPVDSEALVDRYLALPIKDTSELAVDGRF 356 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +++ GI PG K+G +L KQE + + + S+ + L Sbjct: 357 LIENGIRPGPKLGQLLEEIKQEVVAGNLENSEAAIGEFLE 396 >gi|260684047|ref|YP_003215332.1| putative poly(A) polymerase [Clostridium difficile CD196] gi|260687707|ref|YP_003218841.1| putative poly(A) polymerase [Clostridium difficile R20291] gi|260210210|emb|CBA64432.1| putative poly(A) polymerase [Clostridium difficile CD196] gi|260213724|emb|CBE05620.1| putative poly(A) polymerase [Clostridium difficile R20291] Length = 470 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 104/432 (24%), Positives = 178/432 (41%), Gaps = 50/432 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L ++ +VGG VRD L+ D DI T+ P+ V+ +F KT IPT I + Sbjct: 38 IIKELETNGYEAYVVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQH 93 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ + + + Sbjct: 94 GTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSKTGL 153 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G D++N+ I+ +G+ R ED LR+LR RF A K I + K Sbjct: 154 VDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNFK-IAEGTKQSIHKKAD 212 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 +K +S ERI +E NK+L + + + + + G+ K I ++ E+ V Sbjct: 213 LIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPYHIYDV 270 Query: 256 FEWKIDSL--------LRFIVLISWQDK----------------------KSILSMAKKF 285 + + S L+ +L K K + ++ Sbjct: 271 QKHTLISTEVIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKKILRRL 330 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNNLTHQD 344 ++ + + IKKL D ++ +K+ A Sbjct: 331 KYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVELFEDLIKVNWADTLAKNPKYA 390 Query: 345 TCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 IL ++ +K + + G D++ GI PGK +G+IL + IN Sbjct: 391 KQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGHILNKMLEIVIN 450 Query: 395 SSFQLSQEDLHH 406 + +E L Sbjct: 451 NPELNEKEILKE 462 >gi|46445774|ref|YP_007139.1| putative poly A polymerase [Candidatus Protochlamydia amoebophila UWE25] gi|46399415|emb|CAF22864.1| putative poly A polymerase [Candidatus Protochlamydia amoebophila UWE25] Length = 412 Score = 295 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 109/406 (26%), Positives = 190/406 (46%), Gaps = 15/406 (3%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L K + GG VRD +M +DIDIAT P ++M IF T +++ Sbjct: 10 IVTKLVKAGHTAYFAGGWVRDYVMGHPSEDIDIATDATPAQIMDIFPNTLL----VGLAF 65 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 G + ++ F++ T R DL DGR+ + + D+LRRDFTIN ++ D +VI Sbjct: 66 GVVIVVWEGHQFEVATFRKDLDYVDGRHPSGIVLSTAREDALRRDFTINGMFYDPLKEVI 125 Query: 137 -DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D+V G D+R I+ IG+ H R ED LR+LR FRF A +G I+ + A + + Sbjct: 126 YDFVNGQEDIRRHLIRAIGNPHERFQEDRLRMLRAFRFSARFG-FAIELETQQAIFENAE 184 Query: 196 GL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L ++ ERIW E K+ AIV M+ + IF +++ + +++L ++EA + Sbjct: 185 QLFPAVAIERIWQEFKKMAMYPCFDQAIVEMHRLTLLDVIFPELKGLPINELRHLVEAYK 244 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 F ++ IVL+ +++ + +AK+ + L F + N K ++ Sbjct: 245 RFPKNCATIFYLIVLMPRLNREEKIEVAKRLKVTNRDLKLLHYFEDLNQLIKKEKENGLE 304 Query: 315 KLFYLYGDKVMIAKLKIFLAL-------HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 L+ + + N L Q ++ S I ++ ++ Sbjct: 305 DLYPWAHALANPDFSIVVEVIAATFPLNKGNELLIQLKNRFEKLKSHIERIQQKTPLISS 364 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + GI GK++G +L ++ IN+ +Q SQ L+ L + ++ Sbjct: 365 ALLQANGISAGKQMGILLTEAEKLAINNDYQDSQTVLNALKQTMLW 410 >gi|317120984|ref|YP_004100987.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermaerobacter marianensis DSM 12885] gi|315590964|gb|ADU50260.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermaerobacter marianensis DSM 12885] Length = 610 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 104/445 (23%), Positives = 187/445 (42%), Gaps = 51/445 (11%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + + + +L+ L + + +VGG VRD LM +D D+AT+ P+ V RIF + Sbjct: 145 RFDRLVPAPVREVLTRLGEHGHAAYLVGGCVRDLLMARPPKDWDVATSARPEEVRRIFPR 204 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFT 123 T IPT I +GT+ + R ++TT R + +D R+ +V FTRD +AD RRD T Sbjct: 205 T----IPTGIEHGTVTVRARGLSVEVTTFRQESGYSDFRHPDRVEFTRDLRADLERRDLT 260 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 INA+ D +G++ D +GGL DL ++ +GD R ED LR+LR RF A +G + ++ Sbjct: 261 INAMALDAEGRLHDPLGGLADLEAGVVRAVGDPDERFREDALRLLRVVRFAARFGYR-VE 319 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 A + ++ +S ERI E++ LL + P + + G+ + I+ ++ E + Sbjct: 320 PRTEAALARCAPLIRHVSWERIREEMSGLLVSPRPAWGLELLRTSGLLEPIWPELLE-GV 378 Query: 244 DQLSQVIEAEQVFEW--------KIDSLLRFIVLISWQDKKS------------------ 277 V A V+E LR L+ K Sbjct: 379 GVAQNVHHAYTVWEHNLLACQYTPPVLRLRLAGLLHDVGKPRTVSVDARGQRHFYHHEVV 438 Query: 278 ----ILSMAKKFSLPREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLK 330 M ++ + + + ++ I++L G + + Sbjct: 439 GADMARQMLRRLKFDNDTVRHVAHLVRHHLALHHYPGMTDAAIRRLIQRIGFDYLEDLII 498 Query: 331 IFLALHYNNLTHQDTC---------FILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKK 380 + +A + T + + ++L + + G DV+ G+ PG Sbjct: 499 LRVADRAASGTKRAPISRGAYRLLTRMEKILEQDAAFSLHDLAIDGHDVMAATGLGPGPA 558 Query: 381 VGNILVHCKQEWINSSFQLSQEDLH 405 +G IL ++ ++ + ++ L Sbjct: 559 IGWILQKLLEDVLDEPGRNRRQWLM 583 >gi|315185643|gb|EFU19411.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta thermophila DSM 6578] Length = 461 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 106/446 (23%), Positives = 180/446 (40%), Gaps = 51/446 (11%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L+ + L K IVGGA+R+ + +D D+AT P VM++F +VIPT Sbjct: 17 LLLVCRTLRKHGFSCYIVGGALRNLALGTPPEDYDLATDAPPREVMKLFR----RVIPTG 72 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ- 131 I +GT+ I+ R +++TT R + +DGR+ +V FT + D RRDFTINA+ D Sbjct: 73 IQHGTVTIVFRDHCYEVTTFRVETSYSDGRHPDEVRFTTSLEEDLSRRDFTINAMALDPL 132 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+ D G +D++ R IK IG+ R ED LRILR RF +I+ + A Sbjct: 133 TGEFFDPFDGYSDIKRRLIKAIGNPEERFEEDALRILRAIRFATQL-SFSIEQETYTAIG 191 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------IS 242 + + L+ +S ERI E++K++EA P + M GI + ++++ Sbjct: 192 RHVEHLRRISWERIRDELSKIMEAVRPSRGFLQMEETGILSIVLPELEKCRGVLQSPPHR 251 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS---------------------- 280 D L ++ D LR+ L+ K LS Sbjct: 252 FDVLDHLLHTCDALPPS-DPPLRWAGLLHDIGKPETLSEDDLGGIHFHRHEHVSSHLAQR 310 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + K+ P + + + + +++ + G + + +K+ +A Sbjct: 311 ILKRLKFPNAVIQDVSHLIRHHMFDYTPDWTDAAVRRFLHRTGPEYLERLIKLRIADRIG 370 Query: 339 NLTHQDT--------CFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK 389 ++L++ + G + + GIPPG +G L Sbjct: 371 MTGETAPSHDLAGLKARAERLLAENTPLSIKDLAVDGHILQEDAGIPPGPWMGKTLRFLL 430 Query: 390 QEWINSSFQLSQEDLHHLLRKLIASS 415 + Q ++ L L R Sbjct: 431 DAVLEDPSQNTRARLTELARNFYTQR 456 >gi|110802983|ref|YP_697371.1| polyA polymerase family protein [Clostridium perfringens SM101] gi|110683484|gb|ABG86854.1| polyA polymerase family protein [Clostridium perfringens SM101] Length = 422 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 112/423 (26%), Positives = 188/423 (44%), Gaps = 31/423 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL + ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 6 NVQYILEKFDSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 61 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 62 GIKHGTVTVLIDKTPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G DL+N+ I+ +GD R ED LR+LR RF K I+ + Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + P ++ + G + + + + L D Sbjct: 181 KNFKLIKNISMERIQSEFTKIILSNEPDRGLMLLRKLGFSDFLVKEFKNLKLINCYDLYD 240 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 299 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N ++S +K L + V + L L + L++ D + +SDI Sbjct: 300 --NINSISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDI 357 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 358 LASKEPIFIKDLAITGNDLITELNFKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417 Query: 411 LIA 413 + Sbjct: 418 FYS 420 >gi|296112020|ref|YP_003622402.1| polynucleotide adenylyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295833552|gb|ADG41433.1| polynucleotide adenylyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 403 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 102/404 (25%), Positives = 175/404 (43%), Gaps = 18/404 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D L L ++ VGGAVRD L+N + D+DIAT+ P+ V R+F+ T + Sbjct: 11 KDAQPALKRLEDAGHEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEVKRLFNTT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ ++ITT R++ TD R KV F R D RRDFTINAL Sbjct: 67 TGIQHGTVMVLDFGNGYEITTFRTESTYTDFRRPDKVTFVRSLLEDLKRRDFTINALAMT 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G ++D GL+DL+ I+ +GDA R ED LR++R RF A +I D A Sbjct: 127 HTGDIVDLFNGLSDLKKGIIRAVGDAEVRFTEDALRMMRALRFSAQL-SFDIAVDTQKAL 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 L+ ++ ERI E KLL+ + ++ + G+ + ++ L L + Sbjct: 186 KTLAPNLEKIAVERIRVEFEKLLQGEKAAQSMEMAVHDGVIPYLPGHLENWDLTPLISDL 245 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + Q ++ + S Q + M K L + R + + + + Sbjct: 246 KIRQPQHHQV-VWAHLLSRSSLQ----VEDMKKFMRLWKTSREDIKAVAMIAPIARQIDQ 300 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 I L+ +Y + ++ L + I+ +L + + + G+ + Sbjct: 301 ASIFDLYRIYS-----YRNELIEVLQLMGTATETIANIVHMLKTLPIKQSSDLAINGNKL 355 Query: 371 VKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + G+ PG ++G L + + + L ++LI+ Sbjct: 356 LARGLFNPGPELGRTLEKLARAVLLGEVNNRTDSLLDYAKELIS 399 >gi|254976061|ref|ZP_05272533.1| putative poly(A) polymerase [Clostridium difficile QCD-66c26] gi|255093452|ref|ZP_05322930.1| putative poly(A) polymerase [Clostridium difficile CIP 107932] gi|255315194|ref|ZP_05356777.1| putative poly(A) polymerase [Clostridium difficile QCD-76w55] gi|255517863|ref|ZP_05385539.1| putative poly(A) polymerase [Clostridium difficile QCD-97b34] gi|255650979|ref|ZP_05397881.1| putative poly(A) polymerase [Clostridium difficile QCD-37x79] Length = 445 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 104/432 (24%), Positives = 178/432 (41%), Gaps = 50/432 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L ++ +VGG VRD L+ D DI T+ P+ V+ +F KT IPT I + Sbjct: 13 IIKELETNGYEAYVVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQH 68 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ + + + Sbjct: 69 GTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSKTGL 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G D++N+ I+ +G+ R ED LR+LR RF A K I + K Sbjct: 129 VDPFNGYEDIQNKYIRCVGNPVDRFEEDALRMLRAVRFSAQLNFK-IAEGTKQSIHKKAD 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 +K +S ERI +E NK+L + + + + + G+ K I ++ E+ V Sbjct: 188 LIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPYHIYDV 245 Query: 256 FEWKIDSL--------LRFIVLISWQDK----------------------KSILSMAKKF 285 + + S L+ +L K K + ++ Sbjct: 246 QKHTLISTEVIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKKILRRL 305 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNNLTHQD 344 ++ + + IKKL D ++ +K+ A Sbjct: 306 KYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVELFEDLIKVNWADTLAKNPKYA 365 Query: 345 TCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 IL ++ +K + + G D++ GI PGK +G+IL + IN Sbjct: 366 KQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGHILNKMLEIVIN 425 Query: 395 SSFQLSQEDLHH 406 + +E L Sbjct: 426 NPELNEKEILKE 437 >gi|256961930|ref|ZP_05566101.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis Merz96] gi|256952426|gb|EEU69058.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis Merz96] Length = 406 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 182/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ +++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PELREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKEE 404 >gi|229544023|ref|ZP_04433082.1| tRNA cytidylyltransferase [Bacillus coagulans 36D1] gi|229325162|gb|EEN90838.1| tRNA cytidylyltransferase [Bacillus coagulans 36D1] Length = 400 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 91/397 (22%), Positives = 170/397 (42%), Gaps = 16/397 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L ++ VGG++RDSL+ V D+DIAT+ P+ V +F T + Sbjct: 8 ALPIIRTLEDAGFQAFFVGGSIRDSLLGRPVHDVDIATSAKPEEVKALFKHT----VDIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R + V + D RRDFT+NA+ D+ Sbjct: 64 IEHGTVLVLYKGNQYEITTFRTESAYKDYRRPESVEYVDSLLEDLKRRDFTMNAMAMDKN 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID G +R + I+ +G R ED LR++R RF + G I+ A + Sbjct: 124 GKLIDPFRGSEAIRMKRIETVGSPEERFREDALRMMRAARFTSQLG-FGIEPGTKQAIKR 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ ++ ERI E KLLE ++P A+ + G+ FL QL + Sbjct: 183 HAPLIRHIAVERITQEFIKLLEGEHPYEALQLLQETGLLG--FLPGLCGREAQLFSALHP 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + + + +D + L +K+ LP E R ++ + + Sbjct: 241 VLNELSEQQLWVYLVAAANPEDANAFL---RKWKLPNEKRKAIVRTLSFFRMRAGRKWDP 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + + Y G++ + +F A N + + + Q + + + G ++ Sbjct: 298 L--MLYDAGEQTALDAEAVFCAFRRENPAPRISA-LRQAFQKLPVKNRSELAIDGKKLMA 354 Query: 373 YGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G + +L ++ IN + E + + Sbjct: 355 LFSKKGGPWLKEMLREIEKALINGEIENQYEAIRRWV 391 >gi|229545827|ref|ZP_04434552.1| tRNA adenylyltransferase [Enterococcus faecalis TX1322] gi|229309055|gb|EEN75042.1| tRNA adenylyltransferase [Enterococcus faecalis TX1322] Length = 424 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 29 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 84 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 85 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 144 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 145 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 203 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 204 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 262 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 263 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 321 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 322 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELTITGKD 374 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 375 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 422 >gi|315222652|ref|ZP_07864541.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus anginosus F0211] gi|315188338|gb|EFU22064.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus anginosus F0211] Length = 399 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 179/400 (44%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+N + D+DIA++ P+ RIF +T I Sbjct: 12 EALPVLKKIKNAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKRIFERT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R++ + D R V F R K D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLEDNHEYEVTTFRTEDIYVDYRRPSHVTFVRSLKEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G VID GL+DL+ + ++ +G R ED LRI+R FRF A G ++D+D A Sbjct: 128 AGNVIDLFEGLDDLKQQILRAVGTPSERFNEDALRIMRGFRFQASLG-FSLDTDTFQAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 LK +S ER + E +KLL A + + G + D++ S QL + + Sbjct: 187 MCAPLLKKISVERTFIEFDKLLTASYWRKGLKSLLASGATDYL-PDMRS-SQSQLKTMFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F++ S + L+ ++ K + E + + ++ + Sbjct: 245 IKVDFQFT-SSEQAWATLLMALQVNNVKKFLKHWKTSNEFQKRVEQIVTIYNIRQRHFLD 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y + +MI +I A D I + K + G ++ Sbjct: 304 --KEECYRFELDLMIQAEEIRQAQGLAV----DFEKIHSTYDSLTIHDKHEIVVNGGLLI 357 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K +G PG +G +L + +N E + + + Sbjct: 358 KEFGFKPGPALGQLLTEIETAIVNGVLDNRLEAILAFVEE 397 >gi|116627321|ref|YP_819940.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus LMD-9] gi|122268076|sp|Q03M28|CCA_STRTD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116100598|gb|ABJ65744.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus thermophilus LMD-9] Length = 402 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 96/399 (24%), Positives = 178/399 (44%), Gaps = 14/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + Sbjct: 13 ALPVLEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ +++TT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +VID GL DL NR ++ +G A R ED LRI+R RF A + +I+ A Sbjct: 129 AEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFEAMTS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + I + ++ + D QE + + S V + Sbjct: 188 HAFLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQSFVADY 246 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + L++ + S KK+ + + S + + Sbjct: 247 AEDFRFTSSEQAWAATLLALKHDNP-RSFLKKWKTSVNFQKTVQSLIEIFRFR--MEREV 303 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y YG ++ + A ++ ++ + L +IH K + G + + Sbjct: 304 TKQDVYHYGKDLLKEAETLRQA-QRLDVDYERIAELDGQL--LIHDKHEIVVNGGKLMKE 360 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G PG +G L + ++ +E + ++ + Sbjct: 361 LGFKPGPDLGRTLKAIENAIVDGKLANDEESIMAFVQAM 399 >gi|306827536|ref|ZP_07460818.1| polyA polymerase [Streptococcus pyogenes ATCC 10782] gi|304430243|gb|EFM33270.1| polyA polymerase [Streptococcus pyogenes ATCC 10782] Length = 402 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 103/403 (25%), Positives = 186/403 (46%), Gaps = 18/403 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+ + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEAATFEAMRS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER ++E +KLL A + I M + + L QE L+ L ++ Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNYLIVSLK 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + ++ ++ +D KS L K + + + ++ ++ S Sbjct: 248 DNFTFSDYHQAWAYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSFE 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG ++ + L D I + + K L G ++ Sbjct: 305 KLD--IYQYGKEMA----SLVEGLRKAQSLSVDMDHIEALDQALAIHDKHDIVLNGSHLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 K +G+ PG ++G +L + + + +R+ +A Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 401 >gi|229550019|ref|ZP_04438744.1| tRNA adenylyltransferase [Enterococcus faecalis ATCC 29200] gi|229304932|gb|EEN70928.1| tRNA adenylyltransferase [Enterococcus faecalis ATCC 29200] gi|327535129|gb|AEA93963.1| tRNA adenylyltransferase [Enterococcus faecalis OG1RF] Length = 424 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 29 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 84 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 85 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 144 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 145 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 203 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 204 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 262 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 263 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 321 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 322 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 374 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 375 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 422 >gi|282882323|ref|ZP_06290953.1| tRNA adenylyltransferase [Peptoniphilus lacrimalis 315-B] gi|281297830|gb|EFA90296.1| tRNA adenylyltransferase [Peptoniphilus lacrimalis 315-B] Length = 445 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 112/438 (25%), Positives = 191/438 (43%), Gaps = 44/438 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D+ ++L L+ KS IVGG +RD L+ + D DI T P +V +F + YK+ Sbjct: 2 DKDVFDLLEKLDNHGYKSYIVGGCLRDILLGIRPNDFDITTNARPSQVKEVFRE--YKIF 59 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I YGTI + R + ++ITT RS+ +D R +V+F D RRDFTINA+ Sbjct: 60 HYGIKYGTITVEYRDRLYEITTFRSEGTYSDNRRPDRVLFLDSIDDDLARRDFTINAMAM 119 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D+ + D G+ DL+N+ I+ GDA+ RI ED LRILR RF + + +D + A Sbjct: 120 DKSYNIYDPFNGIRDLKNKIIRACGDANKRIEEDALRILRAIRFATRF-KFYLDEELFDA 178 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + LK ++ ERI+SEI K++ NP + M GI +F +++ Sbjct: 179 ISLNRNLLKNIARERIFSEICKIITYDNPSYGFLLMEETGILDILFPSLRKTVGFDQKTP 238 Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSILS--------------------- 280 +F+ D +RF + K L Sbjct: 239 WHDRNLFDHLLCVMDNVPNDLAIRFAAIFHDIAKPLTLKIDGDGTGHFLGHDALGATMAE 298 Query: 281 -MAKKFSLPREIRYFL-ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + K + P+ + + I Q+ ++ +++ G + ++ ++ A Sbjct: 299 DILKYYKAPKALIEKVSILIKEHMKVQEVMTDKALRRQIKRVGRENILDLYELLYADCVC 358 Query: 339 NLTHQDTCFILQ-------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 +D FIL +L + K+ + G D+++ G GK +G IL + + Sbjct: 359 TRYDRDGSFILNRKKRIEELLDEKEMKKEKFLEINGYDLIELGF-HGKIIGQILKYAENL 417 Query: 392 WINSSFQLSQEDLHHLLR 409 ++ + +E L ++ Sbjct: 418 VLSDTSLNKKEILLEKIK 435 >gi|241896306|ref|ZP_04783602.1| tRNA adenylyltransferase [Weissella paramesenteroides ATCC 33313] gi|241870467|gb|EER74218.1| tRNA adenylyltransferase [Weissella paramesenteroides ATCC 33313] Length = 405 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 103/410 (25%), Positives = 183/410 (44%), Gaps = 24/410 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + ++ VGG+VRD+L++ + D+DIAT+ P+ + +IF++T + T Sbjct: 12 EALPILETIENAGYEAYFVGGSVRDTLLSKPIHDVDIATSAYPEEIKKIFNRT----VDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ I+ ++ TT R++ TD R +V F R D RRDFT+NAL + Sbjct: 68 GIEHGTVMILDHGTGYETTTFRTESTYTDFRRPDEVKFVRSLDEDLKRRDFTVNALALTK 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GG+ D+ + ++ +G R ED LR++R RF A + ID D A Sbjct: 128 DGEVIDLFGGVQDMSAKVLRAVGRPEERFHEDALRMMRAVRFAAQL-DFKIDPDTQKAIA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L ++ ERI E +KL++ + +V M G+ + D L+ E Sbjct: 187 ENAPLLANIAVERINVEFSKLMQGTSASYGLVEMIKSGL-NRFMPGLSSTDQD-LAAYAE 244 Query: 252 AEQVFEWKID----SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 Q+ + D SLL F + ++ QD L + K+ P E+ S + Sbjct: 245 LLQIAQPADDSQAWSLLSFELGLNPQDTSKFLKLWKQ---PNEMIQTAKSVITLMNKLRL 301 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 + + Y D + A + ++ N+ + + + K + G Sbjct: 302 GDVNDWD--LYQTQDAITTALATVKISEISANVDN-----LSMRYQALPIKHKQELAING 354 Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++VK + PG G IL + + + + L H +++ + Sbjct: 355 GELVKSLHLAPGPLFGKILADLEHRVVTGGLENERAALLHAAAEIVEKEK 404 >gi|300860482|ref|ZP_07106569.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TUSoD Ef11] gi|300849521|gb|EFK77271.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TUSoD Ef11] gi|315144420|gb|EFT88436.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX2141] gi|315160448|gb|EFU04465.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0645] Length = 406 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 182/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E ++++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEVEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLNNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|168214036|ref|ZP_02639661.1| polyA polymerase family protein [Clostridium perfringens CPE str. F4969] gi|170714488|gb|EDT26670.1| polyA polymerase family protein [Clostridium perfringens CPE str. F4969] Length = 422 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 113/423 (26%), Positives = 189/423 (44%), Gaps = 31/423 (7%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ IL + ++ IVGG VRDSL+N QD DI T P+++ +F KT IPT Sbjct: 6 NVQYILDKFDSNGFEAFIVGGCVRDSLLNKKPQDYDITTNAFPEKIEELFDKT----IPT 61 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K +++TT R D + R K V F + + D RRDFTINA+ Sbjct: 62 GIKHGTVTVLIDKTPYEVTTYRVDGEYLNNRKPKDVKFVSNIEEDLSRRDFTINAMAYSP 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D G DL+N+ I+ +GD R ED LR+LR RF K I+ + Sbjct: 122 YLGFKDCFNGKEDLKNKLIRCVGDPDKRFSEDALRMLRAIRFSCQLNFK-IEKLTAESIR 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL----DQLS 247 K K +K +S ERI SE K++ + P ++ + N G + + + + L D Sbjct: 181 KNFKLVKNISMERIQSEFTKIILSNEPDRGLMLLRNLGFSDFLVKEFKNLKLINCYDLYD 240 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLI-----SWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + + L +R L S + ++ KK + Sbjct: 241 DIHDTYGLINSLPKKLHVRLAGLFYKVFNSENAVEKCRTILKKLKYDNNTINDTCNLVE- 299 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC------FILQVLSDI 355 N ++S +K L + V + L L + L++ D + +SDI Sbjct: 300 --NINSISCNMTRKKLKLLINSVGTENIFDLLDLQKSYLSYMDEYDTECIDILKNRVSDI 357 Query: 356 IHWKKPLF----PLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + K+P+F +TG+D++ + PGK +G IL + + + ++EDL +L ++ Sbjct: 358 LASKEPIFIKDLAITGNDLITELNYKPGKNIGVILNFLLENVMQTPELNNKEDLLNLSKQ 417 Query: 411 LIA 413 + Sbjct: 418 FYS 420 >gi|19745936|ref|NP_607072.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS8232] gi|50914037|ref|YP_060009.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10394] gi|139473967|ref|YP_001128683.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes str. Manfredo] gi|73619872|sp|Q5XCN7|CCA_STRP6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619877|sp|Q8P1E3|CCA_STRP8 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233885|sp|A2RF34|CCA_STRPG RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|19748093|gb|AAL97571.1| putative poly(A) polymerase [Streptococcus pyogenes MGAS8232] gi|50903111|gb|AAT86826.1| poly(A) polymerase [Streptococcus pyogenes MGAS10394] gi|134272214|emb|CAM30461.1| CCA-adding enzyme [Streptococcus pyogenes str. Manfredo] Length = 402 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 103/403 (25%), Positives = 187/403 (46%), Gaps = 18/403 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+ + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEAATFEAMRS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER ++E +KLL A + I M + + L QE L+ L ++ Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + ++ ++ +D KS L K + + + ++ ++ S Sbjct: 248 DNFTFSDHHQAWAYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSFE 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG ++ + L D I + ++ K L G ++ Sbjct: 305 KLD--IYQYGKEMA----SLVEDLRKAQSLSVDMDRINTLDQALVIHDKHDIVLNGSHLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 K +G+ PG ++G +L + + + +R+ +A Sbjct: 359 KDFGMKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELA 401 >gi|290890522|ref|ZP_06553597.1| hypothetical protein AWRIB429_0987 [Oenococcus oeni AWRIB429] gi|290479918|gb|EFD88567.1| hypothetical protein AWRIB429_0987 [Oenococcus oeni AWRIB429] Length = 399 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 117/401 (29%), Positives = 189/401 (47%), Gaps = 26/401 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF Sbjct: 10 KEAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNYA-- 67 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT + K +++TT R D D R+ K V FT++ K D RRDFTINA + Sbjct: 68 -GEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q+G++ DY GLNDL+ + I+ +GDA R ED LRILR FRF + + I+ + L AS Sbjct: 127 QEGELFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQL-DFKIEEETLRAS 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--LSQ 248 K+ L +++ERI+ E +KLL KNP ++ MY+ GI FL E+ DQ L + Sbjct: 186 QMIKENLNDIATERIFVEFSKLLAGKNPQRSLRQMYDLGIVD--FLPGHELITDQSDLFR 243 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 Q I + RF + S + S+ + + +++ + N K Sbjct: 244 NYIGIQSSSHAI-NWTRF-IFFSNLRESSLTKYLGSWKMSNQLKKQIFKSINLLEKDKPS 301 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + A L+I +AL + + D +L ++ + G Sbjct: 302 KL------------DLFDAGLEISIAL--SAIKRDDRNNLLSDYENLAIHDLSELDINGI 347 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D+ GIP G G I+ K++ I +++ L + Sbjct: 348 DLKNIGIPVGPIYGKIIEDLKEKVILGKINNNKQRLLKEAK 388 >gi|83950749|ref|ZP_00959482.1| Poly A polymerase family protein [Roseovarius nubinhibens ISM] gi|83838648|gb|EAP77944.1| Poly A polymerase family protein [Roseovarius nubinhibens ISM] Length = 378 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 123/401 (30%), Positives = 192/401 (47%), Gaps = 25/401 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 ++ W + L +L++L + IVGGAVR+++M L V D+DIAT P RVM + Sbjct: 3 IEGDWLDAAPLRAVLAMLEAAGHRGLIVGGAVRNAVMGLPVTDMDIATDARPKRVMALAE 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +PT + +GT+ ++ ++ F+ITT R D DGR+AKV FT D D+ RRDFT+ Sbjct: 63 AAGLRAVPTGLDHGTVTVVSGEEPFEITTFRRDEEADGRHAKVAFTDDLAEDARRRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NALYA G VID V G+ D R ++FI DA RI EDYLRILRFFRF A YG +D Sbjct: 123 NALYAQGDGTVIDPVDGVADARAGRVRFIEDAGRRIEEDYLRILRFFRFNAIYGRDGLDP 182 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + L A + GL+ L+ ER+ +E+ KLL A P ++ M G+ + + Sbjct: 183 EALAAIAEHLDGLERLARERVGAEMRKLLAAPEPSMSLAAMAQCGVLMRVLPGAD---VS 239 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 + ++ E +++ R LI ++ + + L + L + Sbjct: 240 AVPVLVALETHAGAPPEAMRRL-ALIGGEEVED------RLRLSKNETSVL-----RRYR 287 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 ++ + L Y +G + + + +AL + I P Sbjct: 288 DGIAAVDDPATLGYRHGAEAARDIVLLRMAL--------GLPQPEDWPAQIRRGAGARCP 339 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 +T D++ G +G L + WI S F ++EDL Sbjct: 340 VTARDLMPE--YEGAALGAKLKEIEARWIASGFTKTKEDLL 378 >gi|170686300|ref|ZP_02877522.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0465] gi|170669997|gb|EDT20738.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0465] Length = 397 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYN 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ + F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWVFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTSVERVQTLFQALPIKSRQEMDVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|254520365|ref|ZP_05132421.1| polyA polymerase [Clostridium sp. 7_2_43FAA] gi|226914114|gb|EEH99315.1| polyA polymerase [Clostridium sp. 7_2_43FAA] Length = 448 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 102/449 (22%), Positives = 188/449 (41%), Gaps = 57/449 (12%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++ I+ K ++ +VGG VRDS++N S +D DI T+ P+ + +F KT IPT Sbjct: 8 EVKFIIDTFYKNNFEAFMVGGCVRDSILNNSPKDYDITTSAKPEDTLSLFEKT----IPT 63 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R++ D R V F D + D RRDFTINAL ++ Sbjct: 64 GIKHGTVTVLINNNSYEVTTYRTEGNYLDNRRPSSVNFVSDIRDDLSRRDFTINALAYNK 123 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 ++DY G++D++N I+ +GDA R ED LR+LR RF +I+ + A + Sbjct: 124 SAGLVDYFNGISDIKNSIIRCVGDADKRFKEDALRMLRAVRFSCQLN-FDIEEETYNAIL 182 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K + +S ERI E+ K+L + NP ++ + + G+ I ++ + Sbjct: 183 NNNKLISNISFERIRDELCKILISDNPSKGLILLKDTGLLGAILPEINNLVNFTPKCNNH 242 Query: 252 AEQVFEWKIDSLL------------------RFIVLISWQD------------KKSILSM 281 VF+ ++ + + L ++ + Sbjct: 243 NNNVFKHTLNVIDNTHNNLLLRLSALLHDVGKLNTLTHNENGFYYFPNHNIEGSLMTRKI 302 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIP---EIKKLFYLYGDKVMIAKLKIFLALHYN 338 K + + +P E+KKL G + + + L Sbjct: 303 LSKLRFDNNTINIVCKLIEHHLVLNVNYLPTKFEVKKLLNTIGKEYI----YLLFDLQRA 358 Query: 339 NLTHQDTCFIL------------QVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 ++ D I ++LS+ K ++G+ ++K + + PGK +G L Sbjct: 359 DINSLDNPKIFLAKVDYIDNLVSEILSNNEPLKIKDLNISGETLIKSFNLKPGKLIGYTL 418 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + + + ++E L L I++ Sbjct: 419 NFLLDKVLENPDLNTRESLLKLSNDFISN 447 >gi|55820512|ref|YP_138954.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus LMG 18311] gi|55822400|ref|YP_140841.1| tRNA CCA-pyrophosphorylase [Streptococcus thermophilus CNRZ1066] gi|73619886|sp|Q5M153|CCA_STRT1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619887|sp|Q5M5P1|CCA_STRT2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|55736497|gb|AAV60139.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus thermophilus LMG 18311] gi|55738385|gb|AAV62026.1| tRNA nucleotidyltransferase/poly(A) polymerase [Streptococcus thermophilus CNRZ1066] Length = 402 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 178/399 (44%), Gaps = 14/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + Sbjct: 13 ALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ +++TT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +VID GL DL NR ++ +G A R ED LRI+R RF A + +I+ A Sbjct: 129 AEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFEAMTS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + I + ++ + D QE + + S V + Sbjct: 188 HAFLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQSFVADY 246 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + L++ + S KK+ + + S + + Sbjct: 247 AEDFRFTSSEQAWAATLLALKHDNP-RSFLKKWKTSVNFQKTVQSLIEIFRFR--MEREV 303 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y YG ++ + A ++ ++ + L +IH K + G + + Sbjct: 304 TKQDVYHYGKDLLKEAETLRQA-QRLDVDYERIAELDGQL--LIHDKHEIVVNGGKLMKE 360 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G PG +G L + ++ +E + ++ + Sbjct: 361 LGFKPGPDLGRTLRAIENAIVDGELANDEESIMAFVQAM 399 >gi|322385626|ref|ZP_08059270.1| polyA polymerase family protein [Streptococcus cristatus ATCC 51100] gi|321270364|gb|EFX53280.1| polyA polymerase family protein [Streptococcus cristatus ATCC 51100] Length = 401 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 99/403 (24%), Positives = 190/403 (47%), Gaps = 16/403 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + + ++ VGG+VRD+L+N + D+DIA++ P+ + IFS+T + Sbjct: 12 EALPVLEKIKEAGFEAYFVGGSVRDALLNRPIHDVDIASSAYPEEIKTIFSRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + ++ITT R++ + D R +V F R + D RRD TINAL +Q Sbjct: 68 GIEHGTVLVLEGQGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDLTINALALNQ 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G+++D GL D++NRT++ +G A R ED LRI+R FRF A + +++ A Sbjct: 128 EGEIVDLFNGLADMKNRTLRAVGVASERFNEDALRIMRGFRFQAGL-DFDLEDLTFQAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + + FL + S + L ++++ Sbjct: 187 DCAPLLEKISVERIFIEFDKLLMAPFWRKGLESLIKAAAYD--FLPDMKHSAEALQELLD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 S + L+ K + K + E + + ++ S+ Sbjct: 245 GLAEDFQFASSEQAWAALLLALKVKDVRKFLKHWKTSNEFQKRVNQLVAVYEIRQERSL- 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ + A + I + + K +TG ++ Sbjct: 304 -SKRDCYQYDLDLILQAESLRQAAGL----PVEFEVIEATHAALTIHDKHEIVVTGSHLI 358 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 YG PG ++G IL + ++ S+E++ + +++ + Sbjct: 359 RDYGFKPGPELGQILTKIEWAIVDGELANSKEEIMNFIKEQVG 401 >gi|312277828|gb|ADQ62485.1| PolyA polymerase family protein [Streptococcus thermophilus ND03] Length = 402 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 14/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + Sbjct: 13 ALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ +++TT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +VID GL DL NR ++ +G A R ED LRI+R RF A + +I+ A Sbjct: 129 AEVIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFEAMTS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + + + ++ + D QE + + S V + Sbjct: 188 HAFLLEKISIERSFIEFDKLLLAPHWKKGVKALLATKAYQYL-PDFQETAEEWQSFVADY 246 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + L++ + S KK+ + + S + + Sbjct: 247 AEDFRFTSSEQAWAATLLALKHDNP-RSFLKKWKTSVNFQKTVQSLIEIFRFR--MEREV 303 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y YG +++ + A ++ ++ + L +IH K + G + + Sbjct: 304 TKQDVYHYGKELLKEAETLRQA-QRLDVDYERIAELDGQL--LIHDKHEIVVNGGKLMKE 360 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G PG +G L + ++ +E + ++ + Sbjct: 361 LGFKPGPDLGRTLRAIENAIVDGELANDEESIMAFVQAM 399 >gi|327470124|gb|EGF15588.1| polyA polymerase family protein [Streptococcus sanguinis SK330] Length = 399 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 105/400 (26%), Positives = 192/400 (48%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ S+ D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKTAGFEAYFVGGSVRDALLQRSIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL NR ++ +G A R ED LRI+R FRF A + +++ D VA Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + D++E S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWHKGLEALLTSGAIE-FLPDLKE-SRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + +L++ D +++ KK+ RE + + + Sbjct: 245 LASDFRFSASEQAWSAILLA-LDVQNVKGFLKKWKTSREFAKKVEDLIEIAVIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A + D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELREAQGLSV----DFSAIQNLDASLTIHSKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ +++ Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGYLPNDLEAIYAYIKE 397 >gi|256619060|ref|ZP_05475906.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 4200] gi|257089882|ref|ZP_05584243.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis CH188] gi|312903304|ref|ZP_07762484.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0635] gi|256598587|gb|EEU17763.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 4200] gi|256998694|gb|EEU85214.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis CH188] gi|310633180|gb|EFQ16463.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0635] gi|315577710|gb|EFU89901.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0630] Length = 406 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 182/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E ++++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEVEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|306831587|ref|ZP_07464745.1| tRNA adenylyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426372|gb|EFM29486.1| tRNA adenylyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 401 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 99/401 (24%), Positives = 181/401 (45%), Gaps = 18/401 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF ++ + Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIF----HRTVDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL DL + ++ +G+ R ED LRI+R FRF A + +I+ D A Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASL-DFDIEPDTFAAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVI 250 L+ +S ER + E +KLL A I M K + +L+ +L QL + Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMITSQAQKYLPYLENAHDNLQQLLDDL 246 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + F+ + ++ + +D + L K S ++ +++ + + + Sbjct: 247 ACDYHFKTSEQAWSALLLALDVKDVRVFLKAWKTSSQFQKDVEKIVAIYRFRLENELDKM 306 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y YG ++ + AL D I ++ ++ K + G + Sbjct: 307 E-----MYRYGSCLI----EQAEALRAGFGLPVDFERIERLDKELTIHDKHEIVVNGGVL 357 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +K PG ++G +L +++ + +E + +RK Sbjct: 358 IKELQYKPGPELGRVLKEIEEKIVLGELANDKEAIFDFIRK 398 >gi|300361590|ref|ZP_07057767.1| tRNA adenylyltransferase [Lactobacillus gasseri JV-V03] gi|300354209|gb|EFJ70080.1| tRNA adenylyltransferase [Lactobacillus gasseri JV-V03] Length = 398 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 98/398 (24%), Positives = 178/398 (44%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T Sbjct: 13 ALPVLKQINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 69 IKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVD 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G VID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A Sbjct: 129 GNVIDHFDGLGDLDKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+ A A + G+ +E+ + + L+ + Sbjct: 188 NHELLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV-PGFKGKK-ENLALYPQL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + I+L+ ++K S + M K + +++FF+ ++ + Sbjct: 246 NFSPTTEANLWALMIILLKLPNEKIPSFMRMWKNSNAMERQVADIVAFFDLISSRAPNNY 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G + + + + + L + ++ + + G + Sbjct: 306 D-----LYQAGLETIASTIDLAHILG----QPINGSALVDGYEALPIKNSHDLVIDGHFL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K GIP G +VG +L K+ + ++ + L Sbjct: 357 LKNGIPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFL 394 >gi|300814961|ref|ZP_07095189.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300510931|gb|EFK38203.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 445 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 113/438 (25%), Positives = 191/438 (43%), Gaps = 44/438 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D+ ++L L+ KS IVGG +RD L+ + D DI T P +V +F + YK+ Sbjct: 2 DKDVFDLLEKLDNHGYKSYIVGGCLRDILLGIRPNDFDITTNARPSQVKEVFRE--YKIF 59 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I YGTI + R + ++ITT RS+ +D R +V+F D RRDFTI+A+ Sbjct: 60 DYGIKYGTITVEYRDRLYEITTFRSEGTYSDNRRPDRVLFLDSIDDDLARRDFTISAMAM 119 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D+ + D G+ DL+N+ I+ GDA+ RI ED LRILR RF + + +D + A Sbjct: 120 DKSYNIYDPFNGIRDLKNKIIRACGDANKRIEEDALRILRAIRFATRF-KFYLDEELFDA 178 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + LK ++ ERI+SEI K++ NP + M GI +F +++ Sbjct: 179 ISLNRNLLKNIARERIFSEICKIITYDNPSYGFLLMEETGILDILFPSLRKTVGFDQKTP 238 Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSILS--------------------- 280 +F+ D LRF + K L Sbjct: 239 WHDRNLFDHLLCVMDNVPNDLSLRFAAIFHDIAKPLTLKIDGDGTGHFLGHDALGATMAE 298 Query: 281 -MAKKFSLPREIRYFL-ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + K + P+ + + I Q+ ++ +++ G + ++ ++ A Sbjct: 299 DILKYYKAPKALIEKVSILIKEHMKVQEVMTDKALRRQIKRVGRENILDLYELLYADCVC 358 Query: 339 NLTHQDTCFILQ-------VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 QD FIL +L + K+ + G D+++ G GK +G IL + + Sbjct: 359 TRYDQDGSFILNRKKRIEELLDEKEMKKEKFLEINGYDLIELGF-HGKIIGQILKYAENL 417 Query: 392 WINSSFQLSQEDLHHLLR 409 ++ + +E L ++ Sbjct: 418 VLSDTSLNKKEILLEKIK 435 >gi|212638965|ref|YP_002315485.1| tRNA CCA-pyrophosphorylase [Anoxybacillus flavithermus WK1] gi|226702034|sp|B7GHS8|CCA_ANOFW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|212560445|gb|ACJ33500.1| tRNA nucleotidyltransferase [Anoxybacillus flavithermus WK1] Length = 397 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 189/398 (47%), Gaps = 22/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++++ L + ++ VGGAVRD L+ + DIDIAT+ P VM IF +T +P Sbjct: 8 ALSVIETLKRHGHEAYFVGGAVRDYLLQRPIGDIDIATSAHPQEVMAIFPRT----VPVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ +I R +++TT R + D R K V F R D RRDFT+NA+ ++ Sbjct: 64 IAHGTVMVIERGISYEVTTFRKEGRYEDYRRPKDVTFVRSLNEDLQRRDFTMNAIAMNEY 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GG+ L+ R I+ +GD R ED LR++R RF + G ++ ++ A I+ Sbjct: 124 GEIIDPFGGVEALKQRIIETVGDPAERFNEDALRMMRALRFVSQLG-FSLSTETKQAIIR 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL AI + +F + ++ ++L ++ Sbjct: 183 YGHLLQHIAVERIAVEFEKLLLGPFVSKAIALLVETNLFAYL-PEL-ATKKEELIKLSSY 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V +I++ RF ++ + ++ K + L + ++ + ++L+ Sbjct: 241 SLVPVDRIEAWARFAFVVHFHREQ-----LKNWKLSNHLIRDILICLKALEHIRSLTDWT 295 Query: 313 IKKLFYLYGDKVM-IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD-V 370 I L Y YG + I +++ A Y++ +L+ + + + G D + Sbjct: 296 IDAL-YEYGPYIPHIERIR---AAVYDD--KPSVHSLLKQWEMLPIRNRKELAINGHDLL 349 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + +G G + ++ + ++ ++ + +E L Sbjct: 350 ILFGKKGGPWLSEMIENIERAVLHRQVENEKEKLKEWA 387 >gi|116491042|ref|YP_810586.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oenococcus oeni PSU-1] gi|116091767|gb|ABJ56921.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oenococcus oeni PSU-1] Length = 399 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 118/401 (29%), Positives = 189/401 (47%), Gaps = 26/401 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF Sbjct: 10 KEAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNYA-- 67 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT + K +++TT R D D R+ K V FT++ K D RRDFTINA + Sbjct: 68 -GEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q+GK+ DY GLNDL+ + I+ +GDA R ED LRILR FRF + + I+ + L AS Sbjct: 127 QEGKLFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQL-DFKIEEETLRAS 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--LSQ 248 K+ L +++ERI+ E +KLL KNP ++ MY+ GI FL E+ DQ L + Sbjct: 186 QMIKENLNDIATERIFVEFSKLLAGKNPQRSLRQMYDLGIVD--FLPGHELITDQSDLFR 243 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 Q I + RF + S + S+ + + +++ + N K Sbjct: 244 NYIGIQSSSHAI-NWTRF-IFFSNLRESSLTKYLGSWKMSNQLKKQIFKSINLLEKDKPS 301 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + A L+I +AL + + D +L ++ + G Sbjct: 302 KL------------DLFDAGLEISIAL--SAIKRDDRNNLLSDYENLAIHDLSELDINGI 347 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D+ GIP G G I+ K++ I +++ L + Sbjct: 348 DLKNIGIPVGPIYGKIIEDLKEKVILGKINNNKQRLLKEAK 388 >gi|307274965|ref|ZP_07556128.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX2134] gi|306508413|gb|EFM77520.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX2134] Length = 406 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 95/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNNW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + + + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVKGNLENKQEVLLSFAKKQRSKGE 404 >gi|323693975|ref|ZP_08108160.1| hypothetical protein HMPREF9475_03023 [Clostridium symbiosum WAL-14673] gi|323501975|gb|EGB17852.1| hypothetical protein HMPREF9475_03023 [Clostridium symbiosum WAL-14673] Length = 408 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 103/398 (25%), Positives = 172/398 (43%), Gaps = 13/398 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL+ L ++ VGG VRD+L+ D DI T+ P++V ++F K I T + Sbjct: 11 EILAGLRADGYEAFAVGGCVRDTLLGRVPGDWDITTSARPEQVKKVF----GKTIDTGLQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ ++ITT R D D R+ +V FT D K D RRDFTINA+ + Sbjct: 67 HGTVTVMREHVGYEITTYRIDGEYEDARHPKEVAFTSDLKEDLRRRDFTINAMAYSHETG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG+ DL+ ++ +G+A R ED LRILR RF A I+ + A Sbjct: 127 IVDIFGGMKDLKEGVVRCVGNAVERFTEDALRILRAIRFSAQLN-FTIEDETYAALTVIA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-E 253 L +S ERI +E+ K L + +P ++ G+ I + + +V EA Sbjct: 186 PNLANVSKERIQAELTKTLLSDHPERILLV-EETGMSPYISAGFHSVFGTNIGRVREACM 244 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF---LISFFNCNFNQKTLSI 310 + LR+ +S+ + + K+ + + L+ +F+ + + Sbjct: 245 RASGLPARKSLRWAAFLSYGGEDCAAQILKELKMDNDTTDRVKTLVRWFSEELQEDDCKV 304 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E+ G + LK L T + V S + +TG D+ Sbjct: 305 REVMSSMED-GRFDELLLLKESLLPEEAAGTGRIRKTAEAVRSRGDCIRMRDMAVTGKDL 363 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ PG +GNIL + +E L ++ Sbjct: 364 IAAGVRPGPDMGNILQRLFLYVLKHPECNEKEYLLNMA 401 >gi|242242738|ref|ZP_04797183.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis W23144] gi|242233874|gb|EES36186.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis W23144] Length = 400 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 100/404 (24%), Positives = 171/404 (42%), Gaps = 26/404 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL + K+ VGG+VRD +M + D+DI T+ +PD + IF KT IP Sbjct: 9 AKPILKKIQNNGFKAYFVGGSVRDYIMQRPIHDVDITTSAMPDEIESIFDKT----IPVG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + ++ITT RS+ I R ++V F RD D RRDFT+NA+ D Sbjct: 65 KEHGTINVVFQNDNYEITTFRSEDEYINHRRPSEVYFVRDLYQDVQRRDFTMNAIAMDLN 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++ DY G D++NR I+ +G R ED LRI+R RF + + IDSD L A Sbjct: 125 YQLYDYFNGQQDIKNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLQAMSS 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ LS ER+ E+ KL+ N + M N F I + E Sbjct: 184 HISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNYI----------PFFKSFEM 233 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + + +I ++ Q K + + + + + + + + Sbjct: 234 SHLHIDEPITFELWIAILIVQQPKDVQ--LSSLKISNQEKATIKKWITLIQTLPKIQSKQ 291 Query: 313 -IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLT 366 + L Y Y K + L + L N LT + I + + + + Sbjct: 292 SLITLVYDYNLKDIEILLSLHHLLKQNGLTTANQLIINEISIREANKKLPIHCRKELAIN 351 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G D++ + G + + L + I++ ++E++ + Sbjct: 352 GKDILNHTNKNSGPWLKDTLREIEIAVISNQIANTKEEILEWVD 395 >gi|65318901|ref|ZP_00391860.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Bacillus anthracis str. A2012] Length = 400 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 177/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 10 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 66 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 126 GEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 185 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYN 243 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 244 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 300 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 301 V--LLYKTGIHIAEMAERVYEA-MIESYDHTSVERVQTLFQALPIKSRQEMDVTGNDLLN 357 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 358 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 396 >gi|255972800|ref|ZP_05423386.1| poly A polymerase [Enterococcus faecalis T1] gi|256762486|ref|ZP_05503066.1| poly A polymerase [Enterococcus faecalis T3] gi|255963818|gb|EET96294.1| poly A polymerase [Enterococcus faecalis T1] gi|256683737|gb|EEU23432.1| poly A polymerase [Enterococcus faecalis T3] Length = 404 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 9 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 65 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 125 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 183 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 184 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 242 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 243 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 301 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 302 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 354 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 355 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 402 >gi|257437855|ref|ZP_05613610.1| metal dependent phosphohydrolase [Faecalibacterium prausnitzii A2-165] gi|257199515|gb|EEU97799.1| metal dependent phosphohydrolase [Faecalibacterium prausnitzii A2-165] Length = 464 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 103/465 (22%), Positives = 181/465 (38%), Gaps = 69/465 (14%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L L+ + VGG VRDSL+ L D D+ T+ P++VM +F + K I Sbjct: 7 DPGAALLLDALHGAGHAAYAVGGCVRDSLLGLDPHDWDLCTSARPEQVMALFGEE--KCI 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYA 129 PT + +GT+ + + ++ TT R++ +DGR+ V F + + D RRDFTINA+ Sbjct: 65 PTGLQHGTVTVKQGGRLYETTTFRTEGAYSDGRHPDAVCFVPEVREDLARRDFTINAMAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +ID GG +DL ++ +G+ R ED LRILR +RF A +G ID VA Sbjct: 125 SAEEGLIDPFGGRDDLAAHRVRAVGEPERRFEEDALRILRLYRFAARFG-FAIDPATGVA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQLSQ 248 + L +S+ERI E+ KLL A P + + + I +++ E ++ ++ Sbjct: 184 ARALGPHLDCVSAERIQEELLKLLAAPRPGSYL----EPAVLAVILPELEPEKQPERFAE 239 Query: 249 VIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFS-----------LPREIRYFLI 296 + E ++++ R L+ + +K L RE Sbjct: 240 LCRTIDRIEPTVENVPARLAALLCPLGEAGARKALRKLKCSNALTDEVTALEREAGGGAG 299 Query: 297 SFFNCNFNQKTLSIP--------------------------------------------- 311 SF + + +++ P Sbjct: 300 SFLLGHESGHSIARPIACGNRVPPQRTVLGETPDTPVQTPCVTPVSEEEAPGTPGSDQTL 359 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYN--NLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 K+L Y + + A H ++ ++ + + G D Sbjct: 360 MAKRLLGRYELPTIQRLTALCSARHPEQTGAFAALRAEAERLTAENACCRVSQLAVNGRD 419 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++ G+ PG + +L + I ++ L + AS Sbjct: 420 LMAAGVRPGPGLRQVLNALLEAVITGQTPNEKDALLAAAAQFSAS 464 >gi|255101627|ref|ZP_05330604.1| putative poly(A) polymerase [Clostridium difficile QCD-63q42] gi|255307496|ref|ZP_05351667.1| putative poly(A) polymerase [Clostridium difficile ATCC 43255] Length = 445 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 107/432 (24%), Positives = 176/432 (40%), Gaps = 50/432 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L K ++ IVGG VRD L+ D DI T+ P+ V+ +F KT IPT I + Sbjct: 13 IIKELEKNGYEAYIVGGCVRDCLLERVPNDWDITTSARPEVVVELFEKT----IPTGIQH 68 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ + F++TT R D +DGR+ + FT + D RRDFTIN++ + + + Sbjct: 69 GTVTVMIEHEPFEVTTYRIDGNYSDGRHPDSIEFTNNIVKDLSRRDFTINSIAYNSKTGL 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G D++N+ I +G+ R ED LR+LR RF A K I + K Sbjct: 129 VDPFNGYEDIQNKYIHCVGNPVDRFEEDALRMLRAVRFSAQLNFK-IAEGTKQSIHKKAD 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 +K +S ERI +E NK+L + + + + + G+ K I ++ E+ V Sbjct: 188 LIKNVSIERIQTEFNKILVSDSSK--LNLLKSTGLLKFIIPEICELEDVTQHNPYHIYDV 245 Query: 256 FEWKIDSL--------LRFIVLISWQDK----------------------KSILSMAKKF 285 + + + L+ +L K K + K+ Sbjct: 246 QKHTLIATEAIEDELYLKLTMLFHDLGKKVTKTTDKNGVDHFYTHSRESVKIAKKILKRL 305 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL-KIFLALHYNNLTHQD 344 ++ + + IKKL D + L K+ A Sbjct: 306 KYDNYTINKVLILIQYHDYRIEPKRKIIKKLLNKLEDVGLFEDLIKVNWADTLAKNPKYA 365 Query: 345 TCFILQVLSDIIHWKKPL----------FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 IL ++ +K + + G D++ GI PGK +G IL + IN Sbjct: 366 KQKILNLIECEKEFKHIINQKECFNLKDLAINGKDLISIGIKPGKDIGYILNKMLEIVIN 425 Query: 395 SSFQLSQEDLHH 406 + +E L Sbjct: 426 NPELNEKEILKE 437 >gi|323486232|ref|ZP_08091560.1| poly A polymerase [Clostridium symbiosum WAL-14163] gi|323400450|gb|EGA92820.1| poly A polymerase [Clostridium symbiosum WAL-14163] Length = 408 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 103/397 (25%), Positives = 172/397 (43%), Gaps = 13/397 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL+ L ++ VGG VRD+L+ D DI T+ P++V ++F K I T + Sbjct: 11 EILAGLRADGYEAFAVGGCVRDTLLGRVPGDWDITTSARPEQVKKVF----GKTIDTGLQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ ++ITT R D D R+ +V FT D K D RRDFTINA+ + Sbjct: 67 HGTVTVMREHVGYEITTYRIDGEYEDARHPKEVAFTSDLKEDLRRRDFTINAMAYSHETG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG+ DL+ ++ +G+A R ED LRILR RF A I+ + A Sbjct: 127 IVDIFGGMKDLKEGVVRCVGNAVERFTEDALRILRAIRFSAQLN-FTIEDETYAALTVIA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-E 253 L +S ERI +E+ K L + +P ++ G+ I + + +V EA Sbjct: 186 PNLANVSKERIQAELTKTLLSDHPERILLV-EETGMSPYISAGFHSVFGTNIGRVREACM 244 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF---LISFFNCNFNQKTLSI 310 + LR+ +S+ + + K+ + + L+ +F+ + + Sbjct: 245 RASGLPARKSLRWAAFLSYGGEDCAAQILKELKMDNDTTDRVKTLVRWFSEELQEDDCKV 304 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E+ G + LK L T + V S + +TG D+ Sbjct: 305 REVMSSMED-GRFDELLLLKESLLPEEAAGTGRIRKTAEAVRSRGDCIRMRDMAVTGKDL 363 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + G+ PG +GNIL + +E L ++ Sbjct: 364 IAAGVRPGPDMGNILQRLFLYVLKHPECNEKEYLLNM 400 >gi|326793190|ref|YP_004311011.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium lentocellum DSM 5427] gi|326543954|gb|ADZ85813.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium lentocellum DSM 5427] Length = 455 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 101/439 (23%), Positives = 183/439 (41%), Gaps = 50/439 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I I+ ++ ++ IVGG VRD LMN D DI T+ P+ + RIF +T Sbjct: 11 KEAIQIIQMIEAVGYEAYIVGGCVRDLLMNRQPHDWDITTSAKPEEIKRIFKRT----YD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ +I ++F++TT R + D R KV F D D RRDFT+NA+ Sbjct: 67 TGIEHGTVTVILNTEHFEVTTYRIEGEYKDFRRPDKVSFVDDITLDLSRRDFTMNAIAYH 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +D G D++ + I+ + A R ED LRILR RF A G + I+++ L Sbjct: 127 PDRGFVDPYEGQRDIKRQCIRSVRCAKERFTEDALRILRAVRFSAQLGFQ-IETETLKGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L +S ERI E K+ + P + I +Y + + IF D + + Sbjct: 186 EACRALLTHISKERIRDEFLKICVSSRPGH-IDLLYQLKLLEYIFPDFIKAYEIPQNHPH 244 Query: 251 EAEQVFEW--------KIDSLLRFIVLISW----------------------QDKKSILS 280 V + + ++R +L+ + ++ Sbjct: 245 HTYNVAKHTLVAMENSEPTVIVRLTMLLHDIGKVYTRTTDKHGIDHFYNHPKRSEQIASE 304 Query: 281 MAKKFSLPREIRYFLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + K + + + + +S +KK+ + G+++ LK+ A Sbjct: 305 VLKDLRMDNHTIKAVCELIRYHDYHIEHHISKVYVKKVMMVIGEELFDELLKVQYADAMA 364 Query: 339 ----------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + + + +++++ + K + +TG D+++ GIP GK +G++L Sbjct: 365 QNLEKLQPKLDAIEKQRNYKNEIIANHEPYHKGMLAITGSDLIEIGIPKGKIIGDLLEAA 424 Query: 389 KQEWINSSFQLSQEDLHHL 407 Q+ I+ + L Sbjct: 425 LQKVIHEPNFNQKALLLTY 443 >gi|256853122|ref|ZP_05558492.1| poly A polymerase [Enterococcus faecalis T8] gi|307291999|ref|ZP_07571868.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0411] gi|256711581|gb|EEU26619.1| poly A polymerase [Enterococcus faecalis T8] gi|306496997|gb|EFM66545.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0411] gi|315029388|gb|EFT41320.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX4000] Length = 406 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELTITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|42780739|ref|NP_977986.1| tRNA CCA-pyrophosphorylase [Bacillus cereus ATCC 10987] gi|73619740|sp|Q73AV7|CCA_BACC1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|42736659|gb|AAS40594.1| polyA polymerase [Bacillus cereus ATCC 10987] Length = 397 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + A+ + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHL-PYLQMSEERLLKATQYN 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPAVFL---RQWKFSNKKIKDIVAVLLTVRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTSVKRVQTLFQALPIKNRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|30261632|ref|NP_844009.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Ames] gi|47526833|ref|YP_018182.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184463|ref|YP_027715.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Sterne] gi|49477261|ref|YP_035752.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869330|ref|ZP_02213989.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0488] gi|167633263|ref|ZP_02391588.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0442] gi|167639160|ref|ZP_02397433.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0193] gi|170706553|ref|ZP_02897013.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0389] gi|177650452|ref|ZP_02933419.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0174] gi|190568682|ref|ZP_03021587.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis Tsiankovskii-I] gi|196033458|ref|ZP_03100870.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus W] gi|196039035|ref|ZP_03106342.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus NVH0597-99] gi|218902747|ref|YP_002450581.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH820] gi|227815617|ref|YP_002815626.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. CDC 684] gi|229602549|ref|YP_002866039.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0248] gi|254683124|ref|ZP_05146985.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. CNEVA-9066] gi|254723712|ref|ZP_05185498.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. A1055] gi|254734472|ref|ZP_05192184.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Western North America USA6153] gi|254740884|ref|ZP_05198572.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Kruger B] gi|254755122|ref|ZP_05207156.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Vollum] gi|254759659|ref|ZP_05211683.1| tRNA CCA-pyrophosphorylase [Bacillus anthracis str. Australia 94] gi|73619738|sp|Q81ST6|CCA_BACAN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619747|sp|Q6HL19|CCA_BACHK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|226702035|sp|B7JH21|CCA_BACC0 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|254813684|sp|C3P5Q6|CCA_BACAA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|254813685|sp|C3L8Q3|CCA_BACAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|30255860|gb|AAP25495.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. Ames] gi|47501981|gb|AAT30657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178390|gb|AAT53766.1| polyA polymerase [Bacillus anthracis str. Sterne] gi|49328817|gb|AAT59463.1| poly(A) polymerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714770|gb|EDR20288.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0488] gi|167512950|gb|EDR88323.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0193] gi|167531301|gb|EDR93979.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0442] gi|170128651|gb|EDS97518.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0389] gi|172083596|gb|EDT68656.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0174] gi|190560282|gb|EDV14262.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis Tsiankovskii-I] gi|195993892|gb|EDX57848.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus W] gi|196030180|gb|EDX68780.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus NVH0597-99] gi|218538455|gb|ACK90853.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH820] gi|227007135|gb|ACP16878.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. CDC 684] gi|229266957|gb|ACQ48594.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus anthracis str. A0248] Length = 397 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 177/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYN 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTSVERVQTLFQALPIKSRQEMDVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|254560584|ref|YP_003067679.1| nucleotidyl transferase/polymerase [Methylobacterium extorquens DM4] gi|254267862|emb|CAX23728.1| putative nucleotidyl transferase/polymerase [Methylobacterium extorquens DM4] Length = 424 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 127/390 (32%), Positives = 194/390 (49%), Gaps = 7/390 (1%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM + K + T I +G Sbjct: 32 LAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACAREAGLKAVGTGIEHG 91 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 TI +I + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D +G++ D Sbjct: 92 TITLIVGGEPHEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSLDAEGRLHDT 151 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL ASI A+ L Sbjct: 152 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAASIAARDSLD 211 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A ++A+ + G+ I V E+ +L++ AE Sbjct: 212 RLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGELG--RLARCAAAE----P 265 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +D+ RF L + + + + L R L + + E + Sbjct: 266 HLDATARFAAL-AVRTIEDADRLQASLRLSRAEHARLTGYAIALAALHDRPVIEADAVPA 324 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 L ++ +AL + +P+ P+TG D+V G+ PG Sbjct: 325 LVATYEASPLRELLIALDGEPRPRVTPAARAVLDRMEAAGTRPVLPVTGADLVARGVAPG 384 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + VG L + W+ S + L+ Sbjct: 385 RTVGAGLRAARDLWLASGCPDDAQARERLI 414 >gi|29376121|ref|NP_815275.1| poly A polymerase [Enterococcus faecalis V583] gi|227518748|ref|ZP_03948797.1| tRNA adenylyltransferase [Enterococcus faecalis TX0104] gi|256958977|ref|ZP_05563148.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis DS5] gi|256965128|ref|ZP_05569299.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis HIP11704] gi|257079008|ref|ZP_05573369.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis JH1] gi|257082553|ref|ZP_05576914.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis E1Sol] gi|257085186|ref|ZP_05579547.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis Fly1] gi|257419293|ref|ZP_05596287.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis T11] gi|257422622|ref|ZP_05599612.1| poly(A) polymerase [Enterococcus faecalis X98] gi|294781648|ref|ZP_06746983.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis PC1.1] gi|307271021|ref|ZP_07552304.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX4248] gi|307273228|ref|ZP_07554474.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0855] gi|312900757|ref|ZP_07760054.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0470] gi|312951490|ref|ZP_07770386.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0102] gi|73619770|sp|Q834S5|CCA_ENTFA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|29343583|gb|AAO81345.1| poly A polymerase [Enterococcus faecalis V583] gi|227073801|gb|EEI11764.1| tRNA adenylyltransferase [Enterococcus faecalis TX0104] gi|256949473|gb|EEU66105.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis DS5] gi|256955624|gb|EEU72256.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis HIP11704] gi|256987038|gb|EEU74340.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis JH1] gi|256990583|gb|EEU77885.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis E1Sol] gi|256993216|gb|EEU80518.1| Poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis Fly1] gi|257161121|gb|EEU91081.1| poly(A) polymerase/tRNA nucleotidyltransferase [Enterococcus faecalis T11] gi|257164446|gb|EEU94406.1| poly(A) polymerase [Enterococcus faecalis X98] gi|294451200|gb|EFG19667.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis PC1.1] gi|295112981|emb|CBL31618.1| tRNA nucleotidyltransferase/poly(A) polymerase [Enterococcus sp. 7L76] gi|306510213|gb|EFM79237.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0855] gi|306512519|gb|EFM81168.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX4248] gi|310630456|gb|EFQ13739.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0102] gi|311292238|gb|EFQ70794.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0470] gi|315033966|gb|EFT45898.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0017] gi|315036975|gb|EFT48907.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0027] gi|315147261|gb|EFT91277.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX4244] gi|315150540|gb|EFT94556.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0012] gi|315152487|gb|EFT96503.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0031] gi|315155765|gb|EFT99781.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0043] gi|315158068|gb|EFU02085.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0312] gi|315169038|gb|EFU13055.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1341] gi|315575870|gb|EFU88061.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0309B] gi|315580522|gb|EFU92713.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0309A] gi|323480720|gb|ADX80159.1| tRNA adenylyltransferase [Enterococcus faecalis 62] Length = 406 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|58337270|ref|YP_193855.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus NCFM] gi|227903855|ref|ZP_04021660.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus ATCC 4796] gi|73619782|sp|Q5FKF0|CCA_LACAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|58254587|gb|AAV42824.1| tRNA nucleotidyltransferase, polyA polymerase polyA [Lactobacillus acidophilus NCFM] gi|227868742|gb|EEJ76163.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus ATCC 4796] Length = 399 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 94/399 (23%), Positives = 179/399 (44%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L++ V DIDI T+ P+ V +F K+ I T Sbjct: 14 AMPVLQRLEDAGFEAYFVGGSVRDVLLDRHVHDIDITTSAYPEEVKELFEKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D + Sbjct: 70 IKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDIR 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID G+ DL+ R I+ +G+ R ED LR++R RF + E ++ A Sbjct: 130 GQIIDLFNGVEDLKKRVIRAVGNPETRFHEDALRMMRAVRFMSQL-EFKLEEKTERAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK +S ERI E K+ + A + + +++ + L + ++ Sbjct: 189 NHELLKKISIERIREEFVKMGLGSHSRQAFQVFLDTQLSEDVPNFAGKKDLLSVYPKLQF 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + S++ ++ + + + K + E +I+ F+ Sbjct: 249 SPTMETSLWSIIIILLKMPNESIGKFMRAWKNSNAMTEKVERIINLFDLISEHAPTDYE- 307 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + G++ +I + + L + ++ + K + G +++ Sbjct: 308 ----LFQAGEETLINTIDVAHILG----QPISSEALVDRYMALPIKKSSELAIDGRFLIE 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G+ PG K+G L + ++ ++S + +QE + L +L Sbjct: 360 QGMRPGAKLGETLNNIRKLVVSSEIENTQEAIEVYLDEL 398 >gi|312869131|ref|ZP_07729305.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus oris PB013-T2-3] gi|311095377|gb|EFQ53647.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus oris PB013-T2-3] Length = 401 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 166/400 (41%), Gaps = 17/400 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L + + ++ VGG VRD+++ + DIDIAT+ P + +IF +T + Sbjct: 11 EPARPVLQKIEQAGFEAYFVGGCVRDTILGDPIHDIDIATSAYPSEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R V F R D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGVGYETTTFRTESGYQDFRRPDNVTFVRSLAEDLQRRDFTINALALR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G+V+D GL DL+ R I+ +GD + R ED LR++R RF + + ID L Sbjct: 127 ENGEVVDLFDGLGDLQRRLIRAVGDPNERFHEDALRMMRAVRFASKL-DFVIDRPTLEGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 L ++ ERI E+ K+ +NP + G+++ ++ ++ Sbjct: 186 NANAHLLAKIAVERIRVELEKMFLGQNPPAGLKDFLETGLYQYC-PGLKAARQQLSLLLV 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE-IRYFLISFFNCNFNQKTLS 309 A +D + + + K + + E IR N ++ Sbjct: 245 NANGWALTNVDQVWALLAVQLGLSGKQAAKFLRTWKTSNETIRQVGKIILAVNALRQKQV 304 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P+ L + G + ++ + Q + + ++ + G Sbjct: 305 TPD---LMFTVGWPALSDANQVAAVYGW----QQAAASLKKQYDELPIKTAKELAVDGRT 357 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ + G+ PG +G +L ++ +N + +L + Sbjct: 358 LIQEAGLKPGPALGKVLNTLVEDVVNGRLANDKAELLQRV 397 >gi|307289102|ref|ZP_07569058.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0109] gi|306499811|gb|EFM69172.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0109] gi|315164011|gb|EFU08028.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1302] Length = 406 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 95/408 (23%), Positives = 182/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL ++TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTSQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ H + +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLLYYYHQESQVQ----VTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|217976975|ref|YP_002361122.1| Polynucleotide adenylyltransferase region [Methylocella silvestris BL2] gi|217502351|gb|ACK49760.1| Polynucleotide adenylyltransferase region [Methylocella silvestris BL2] Length = 419 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 130/401 (32%), Positives = 209/401 (52%), Gaps = 19/401 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 L I + ++ D++ IVGGAVR++L+ ++DID+ATT P V+ ++IP Sbjct: 23 PGLQRIFAAIDIDGDETRIVGGAVRNALLGRKIEDIDLATTAAPPLVIERARAASLRIIP 82 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 T + +GT+ ++ + F++T+LR D+ TDGR A V F RD+ AD+LRRDFTINAL+ D+ Sbjct: 83 TGLDHGTVTLLVDGRAFEVTSLREDIETDGRRATVRFGRDFCADALRRDFTINALFLDKS 142 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ D+VG L D+ R ++FIGD RI EDYLRILRFFRF A YGE ID DGL+A+++ Sbjct: 143 GRLFDFVGALADIEARRVRFIGDPETRIREDYLRILRFFRFSADYGEGPIDGDGLLAAMR 202 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 A+ GL LS ER+ +E+ KL+ A+ A+ M G+ + + +L +++E Sbjct: 203 ARAGLAQLSRERVRAELLKLVAARRAPEAVEAMSGAGLLGPLIASAPNPA--RLRRLVEQ 260 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + D LLR + + + +A++ L R L +P Sbjct: 261 ----DARADPLLRLAAIC-LETPEDAERIAERLRLSNAERDRLSRAARVMLALHGKPVPP 315 Query: 313 IKK----LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 K L + +G + + + + + + +P P +G Sbjct: 316 PKHFLNVLLFRHGRESALDGFTLA-------AIGASSSGRRDAIDFLKTAPEPRLPFSGA 368 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D++ G G+ VG+ L ++ WI + F +E L LL Sbjct: 369 DLIARGFS-GRAVGDALAALRERWIEAEFSDDREKLDALLD 408 >gi|81428615|ref|YP_395615.1| polynucleotide adenyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|123564233|sp|Q38WX5|CCA_LACSS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|78610257|emb|CAI55306.1| Polynucleotide adenyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 397 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 182/401 (45%), Gaps = 18/401 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + IL + ++ VGG+VRD+L+ L + D+DIAT+ P + +IF +T + Sbjct: 11 AEALPILEQIEAAGFEAYFVGGSVRDNLLGLPIHDVDIATSAYPAEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ +++TT R++ D R V F R + D RRDFTINAL Sbjct: 67 TGIQHGTVMILDHGNGYEVTTFRTETGYQDFRRPDSVTFVRSLEEDLKRRDFTINALAMR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL+ I+ +G A R ED LR++R RF + G ++ A Sbjct: 127 ADGEIIDLFDGIADLKAHKIRAVGVADERFHEDALRMMRAVRFESQLGFSVTET-TQAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--ISLDQLSQ 248 K L+ ++ ERI E KL++ N + + G+++ D+ + ++L++L+ Sbjct: 186 EKHAALLEKIAIERIHVEFMKLMQGIERQNGLRTFIDTGLYRYC-PDLADQLLALERLTA 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + EQ+ + L+ +L Q K + ++ + + K L Sbjct: 245 LP-TEQLHDESAVWLVVTYLL--GQTPAQAGRFLKHWKSANDVIDAVKA--GLVLLPKLL 299 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + Y G V++ L+I + + D L+ + +K + G Sbjct: 300 TATADQWDLYQAGQAVLVISLQIAQMVTTATIPTAD---WLERYDRLQIKQKADLAINGQ 356 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +++ G PG +G L +++ + + E L + Sbjct: 357 ILMQNGFQPGPILGKALAILERKVVLDELPNTTEALLKAAK 397 >gi|118586879|ref|ZP_01544313.1| polynucleotide adenylyltransferase [Oenococcus oeni ATCC BAA-1163] gi|118432711|gb|EAV39443.1| polynucleotide adenylyltransferase [Oenococcus oeni ATCC BAA-1163] Length = 399 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 115/401 (28%), Positives = 189/401 (47%), Gaps = 26/401 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I +L+ L ++ VGG+VRD+++ + D+DI T LP+ + RIF Sbjct: 10 KEAIPVLNCLENHGYQAYFVGGSVRDAILRRPIHDVDITTDALPNEMKRIFKTADNYA-- 67 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GT + K +++TT R D D R+ K V FT++ K D RRDFTINA + Sbjct: 68 -GEKHGTDLVFLNGKKYEVTTFRIDGKYLDNRHPKNVSFTKNLKEDLSRRDFTINAFAMN 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q+G++ DY GLNDL+ + I+ +GDA R ED LRILR FRF + + I+ + L AS Sbjct: 127 QEGELFDYFSGLNDLKKKIIRTVGDAKQRFSEDALRILRAFRFSSQL-DFKIEEETLRAS 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K+ L +++ERI+ E +KLL KNP ++ MY+ GI FL ++ DQ S + Sbjct: 186 QMIKENLNDIATERIFVEFSKLLAGKNPQRSLRQMYDLGIVD--FLPGHKLITDQ-SDLF 242 Query: 251 EAEQVFEWKIDS--LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + D+ RF + S + S+ + + +++ + N K Sbjct: 243 RNYIGIQSSSDAINWTRF-IFFSNLRESSLTKYLGSWKMSNQLKKQIFKSINLLEKDKPS 301 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + A L+I +AL + + D +L ++ + G Sbjct: 302 KL------------DLFDAGLEISIAL--SAIKRDDRNNLLSDYENLAIHDLSELDINGI 347 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D+ GIP G G I+ K++ I +++ L + Sbjct: 348 DLKNIGIPVGPIYGKIIEDLKEKVILGKINNNKQRLLKEAK 388 >gi|324992991|gb|EGC24911.1| polyA polymerase family protein [Streptococcus sanguinis SK405] Length = 399 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 102/400 (25%), Positives = 187/400 (46%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ IF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLKRPIHDVDIASSSYPEETKHIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A + +++ D VA Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D + + + K + RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLDLDVQDVKGILKDWKTSREFAKKVEDLVEIAAFRSERDL- 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 303 -SKRDCYDYDIDLLLQAEELRQAQGLAV----DFSAIQNLDASLTIHSKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ +++ Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGHLPNELEVIYAYIKE 397 >gi|116629563|ref|YP_814735.1| tRNA CCA-pyrophosphorylase [Lactobacillus gasseri ATCC 33323] gi|238853078|ref|ZP_04643470.1| tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus gasseri 202-4] gi|282852058|ref|ZP_06261416.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus gasseri 224-1] gi|311110793|ref|ZP_07712190.1| poly A polymerase [Lactobacillus gasseri MV-22] gi|122273499|sp|Q043S5|CCA_LACGA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116095145|gb|ABJ60297.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus gasseri ATCC 33323] gi|238834326|gb|EEQ26571.1| tRNA adenylyltransferase/tRNA cytidylyltransferase [Lactobacillus gasseri 202-4] gi|282556818|gb|EFB62422.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus gasseri 224-1] gi|311065947|gb|EFQ46287.1| poly A polymerase [Lactobacillus gasseri MV-22] Length = 398 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 97/398 (24%), Positives = 177/398 (44%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T Sbjct: 13 ALPVLKRINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL Sbjct: 69 IKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMGVD 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G VID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A Sbjct: 129 GNVIDHFDGLGDLDKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETERAISD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+ A A + G+ +E+ + D L+ + Sbjct: 188 NHELLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV-PGFKGKK-DNLALYPQL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + I+L+ ++K S + M K + +++FF+ ++ + Sbjct: 246 NFSPTTEANLWALMIILLKLPNEKIPSFMRMWKNSNAMERQVADIVTFFDLVSSRAPSNY 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G + + + + + L + ++ + + G + Sbjct: 306 D-----LYQAGLETIASTIDLAHILG----QPINGSALVDRYEALPIKNNHDLVIDGHFL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K G+P G +VG +L K+ + ++ + L Sbjct: 357 LKNGVPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFL 394 >gi|257416090|ref|ZP_05593084.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis AR01/DG] gi|257157918|gb|EEU87878.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis ARO1/DG] Length = 406 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAILEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|312864188|ref|ZP_07724422.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus vestibularis F0396] gi|311100189|gb|EFQ58398.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus vestibularis F0396] Length = 400 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 178/400 (44%), Gaps = 16/400 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + Sbjct: 13 ALPILEKIKVAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ +++TT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++ID GL DL NR ++ +G A R ED LRI+R RF A + +I+ A Sbjct: 129 AEIIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASL-DFDIEEKTFQAMAS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + I + ++ + D QE + + V + Sbjct: 188 HAPLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQDFVADY 246 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + L++ + S KK+ + + S + + L Sbjct: 247 VEGFRFTSSEQAWAATLLALKHDNP-RSFLKKWKTSVNFQKTVQSLVDIFNFR--LERAV 303 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y YG ++ L+ L D I ++ ++ K + G ++K Sbjct: 304 TKQDVYQYGKEL----LEEAETLRRAQGLDVDYERIAELDGQLLIHDKHEIVVNGGTLMK 359 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G PG +G L + ++ ++E + ++ + Sbjct: 360 ELGFKPGPDLGRALKAIENAIVDGQLANAEEAIMAFVQAM 399 >gi|94994160|ref|YP_602258.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS10750] gi|166233884|sp|Q1J760|CCA_STRPF RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|94547668|gb|ABF37714.1| poly(A) polymerase / tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS10750] Length = 402 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 101/405 (24%), Positives = 186/405 (45%), Gaps = 20/405 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 129 GQVIDKFRGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEAATFEAMRS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQVI 250 L+ +S ER ++E +KLL A + I M + + ++ E L+ L + Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYL-PGLKQREAGLNHLIVSL 246 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + F + ++ ++ +D KS L K + + + ++ ++ S Sbjct: 247 KDNFTFSDHHQAWAYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSF 303 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++ Y YG ++ + L D I + + K L G + Sbjct: 304 EKLD--IYQYGKEMA----SLVEGLRKAQSLSVDMDHIEALDQALAIHNKHDIVLNGSHL 357 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +K +G+ PG ++G +L + + + +R+ +A+ Sbjct: 358 IKDFGMEPGPQLGLMLEKVELAIVEGCLDNDFTTIEAFVREELAT 402 >gi|322517342|ref|ZP_08070217.1| polyA polymerase family protein [Streptococcus vestibularis ATCC 49124] gi|322124039|gb|EFX95592.1| polyA polymerase family protein [Streptococcus vestibularis ATCC 49124] Length = 400 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 178/400 (44%), Gaps = 16/400 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + ++ VGG+VRD+L+N + D+DIA++ P+ +IF +T + Sbjct: 13 ALPILEKIKAAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKQIFERT----VDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ +++TT R++ + D R V F R + D RRDFT+NA ++ Sbjct: 69 IEHGTVLVLENGGEYEVTTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALNEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++ID GL DL NR ++ +G A R ED LRI+R RF A + +I+ A Sbjct: 129 AEIIDKFNGLADLDNRVLRAVGKAEERFNEDALRIMRGLRFTASL-DFDIEEKTFQAMAS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + I + ++ + D QE + + V + Sbjct: 188 HAPLLEKISIERSFIEFDKLLLAPHWKKGIKALLATKAYQYL-PDFQETAEEWQDFVADY 246 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + L++ + S KK+ + + S + + L Sbjct: 247 VEGFRFTSSEQAWAATLLALKHDNP-RSFLKKWKTSVNFQKTVQSLVDIFNFR--LERAV 303 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y YG ++ L+ L D I ++ ++ K + G ++K Sbjct: 304 TKQDVYQYGKEL----LEEAETLRRAQGLDVDYERIAELDGQLLIHDKHEIVVNGGTLMK 359 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G PG +G L + ++ ++E + ++ + Sbjct: 360 ELGFKPGPDLGRALKAIENAIVDGQLANAEEAIMAFVQAM 399 >gi|268319581|ref|YP_003293237.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Lactobacillus johnsonii FI9785] gi|262397956|emb|CAX66970.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Lactobacillus johnsonii FI9785] Length = 398 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 94/398 (23%), Positives = 176/398 (44%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T Sbjct: 13 ALPVLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 69 IKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVD 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A Sbjct: 129 GNIIDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+ A A + G+ +E+ + + L+ + Sbjct: 188 NHELLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV-PGFKGKK-ENLALYPQL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + I+L+ + K + M K + +++FF+ + + Sbjct: 246 NFSPTNEANLWALMIILLKLPNDKIPHFMRMWKNSNAMERQVADIVAFFDLISSHAPNNY 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G + +++ + + L + ++ + + G + Sbjct: 306 D-----LYKAGLETIVSTIDLAHILG----QPVNGSALVDSYEALPIKNNRDLVIDGHFL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K G+P G +VG +L K+ + ++ + + Sbjct: 357 LKNGVPAGPRVGLLLEEIKKAVLEGVISNNKAAITEFI 394 >gi|313890589|ref|ZP_07824217.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121106|gb|EFR44217.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus pseudoporcinus SPIN 20026] Length = 403 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 182/397 (45%), Gaps = 16/397 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILKKIKEAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKAIFTRT----VDLG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLEGGSEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID GL+DL++R ++ +G A R ED LRI+R FRF A + ++ L A + Sbjct: 129 GVIIDKFSGLDDLKSRRLRAVGKAQDRFEEDALRIMRGFRFAATL-DFTVEEKTLQAMAE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S ERI+ E +KLL + + + + N ++ FL + L +++ Sbjct: 188 QAHLLTKISVERIFIEFDKLLMSTHWRRGLELLVNAQAYQ--FLPDLAGQKNNLKKMMTD 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 Q +S + L+ D + + KK+ + + + + ++ + Sbjct: 246 LQATFNFTESAQAWASLMISLDISNSKAFLKKWKTSNDFQKKVDHIVSLYRLRQKQELD- 304 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV- 371 K Y YG ++ + + L + D I + + K + G ++ Sbjct: 305 -KWSIYSYGKEIAL----LCEELRHARALEVDFSKIQALDEALAIHDKHEIVINGRYLMQ 359 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + GIP G ++G +L ++ + + + Sbjct: 360 ELGIPAGPQLGKLLHQVEKAIVCGRLPNELPAIRKYI 396 >gi|255975856|ref|ZP_05426442.1| poly A polymerase [Enterococcus faecalis T2] gi|255968728|gb|EET99350.1| poly A polymerase [Enterococcus faecalis T2] Length = 404 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 9 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 65 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 125 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 183 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 184 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 242 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 243 LPARQIETEAEAWA-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 301 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 302 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 354 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 355 LLAILEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 402 >gi|324325652|gb|ADY20912.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 397 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 177/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYN 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTSVNRVQTLFQALPIKSRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|228476094|ref|ZP_04060802.1| cca-adding enzyme [Staphylococcus hominis SK119] gi|314936408|ref|ZP_07843755.1| polyA polymerase [Staphylococcus hominis subsp. hominis C80] gi|228269917|gb|EEK11397.1| cca-adding enzyme [Staphylococcus hominis SK119] gi|313655027|gb|EFS18772.1| polyA polymerase [Staphylococcus hominis subsp. hominis C80] Length = 400 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 104/406 (25%), Positives = 193/406 (47%), Gaps = 28/406 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + K ++ VGGAVRD +M+ ++ DIDI T+ +PD + IF T IP Sbjct: 9 ALPILNQIEKHHFEAYFVGGAVRDYIMHRTIHDIDITTSAMPDEIEDIFEHT----IPIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT RS+ D R +V F R+ D RRDFTINA+ D+ Sbjct: 65 KEHGTINVVFNNENYEVTTFRSEGDYLDHRRPSEVNFVRNLYEDVQRRDFTINAIAMDKN 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ DY GG D++++ I+ +G+ R ED LRI+R RF + +I ++ A Sbjct: 125 YKIFDYFGGQKDIQSKLIRTVGNPSERFKEDALRIIRGLRFQSQL-TFDIHTETFEAMQL 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 +K LS ERI E KL+ N + ++ + IF I F + +++ +++ +E Sbjct: 184 TCSDVKYLSIERIVVEFKKLILGSNVKQSYHNLLSLKIFNYIPFFNELDMTCVYINEPLE 243 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 EQ +L+ K + L K+ + + + + ++ ++ Sbjct: 244 FEQ----------WLAILLI---KNNNLPSLKQLKISNKEKSDIHTYIAIIETLPQITTK 290 Query: 312 EIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPL 365 + KLF Y Y D ++ L I+ L N + ++ I QV+ + ++ + Sbjct: 291 DALKLFVYDYSDYYILKVLNIYSVLQNNQIPTASELIINSLSIKQVVQHLQLHERKEMDV 350 Query: 366 TGDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G D++ + G + N+L + + + ++E++ + + Sbjct: 351 NGKDLLAHFNKNGGPWLKNVLREIECAIVTDKIKNNKEEILKWVNE 396 >gi|75760406|ref|ZP_00740450.1| POLY(A) POLYMERASE / TRNA NUCLEOTIDYLTRANSFERASE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492117|gb|EAO55289.1| POLY(A) POLYMERASE / TRNA NUCLEOTIDYLTRANSFERASE [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 400 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 89/398 (22%), Positives = 178/398 (44%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 10 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 66 LEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G +I++ A Sbjct: 126 GEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTLG-FSIETKTKQAIET 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L+ Sbjct: 185 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLTATRYK 243 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ F +K Sbjct: 244 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKLKDIVASFIAIRTRKERGWDT 300 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + + + + ++ +TG+D++ Sbjct: 301 V--LLYKTGIHIAEMAERVYEA-MIESYDPTSVKRVQSMFHVLPIQERQEMNVTGNDLLN 357 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + PG V +L ++ + + +E + L+ Sbjct: 358 WANXKPGPWVAEMLQKIEEAIVQGNIVNEKERIREWLQ 395 >gi|301053173|ref|YP_003791384.1| poly(A) polymerase [Bacillus anthracis CI] gi|300375342|gb|ADK04246.1| poly(A) polymerase [Bacillus cereus biovar anthracis str. CI] Length = 397 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 89/399 (22%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + A+ + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHL-PYLQMSEEKLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFEADIEAWAFFLYCIGEEHPAVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTAVNRVQTLFQALPIKSRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V I+ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEIIHKIEEAIVQGNVVNEKECIREWLQE 393 >gi|218529716|ref|YP_002420532.1| polynucleotide adenylyltransferase region [Methylobacterium chloromethanicum CM4] gi|218522019|gb|ACK82604.1| Polynucleotide adenylyltransferase region [Methylobacterium chloromethanicum CM4] Length = 428 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 125/391 (31%), Positives = 197/391 (50%), Gaps = 9/391 (2%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ +++ +VGG VRD+L+ V DID+ATT+ P+ VM K + T I +G Sbjct: 36 LAALDAPGEETRLVGGCVRDALLGTIVADIDLATTLRPEAVMACARTAGLKAVGTGIEHG 95 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ ++ + +++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D +G++ D Sbjct: 96 TVTLVVSGEPYEVTTLREDVETDGRHAVVRFGRDFVRDAERRDFTINALSLDAEGRLHDT 155 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL ASI A+ L Sbjct: 156 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGSGAPDAEGLAASIAARDSLD 215 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A ++A+ + G+ I V E+ +L++ AE Sbjct: 216 RLSRERVRAEFLKLLLAPRAVDAVAILSETGLLPRILGGVGELG--RLARCAAAE----P 269 Query: 259 KIDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 ++D+ RF L + + L + + S R + + + + + Sbjct: 270 RLDATARFAALAVRTLEDTDRLQASLRLSRAEHARLTGYAIALAALHDRPVIEADAVPAL 329 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 + +L I L D +L + + + P+TG D+V G+ P Sbjct: 330 VATHGAGPLRELLIALDGEPRPRATPDARAVLDRME--AAGTRLVLPVTGADLVARGVAP 387 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ VG L + W+ S + L+ Sbjct: 388 GRAVGAGLRAARDLWLASGCPDDAQARERLI 418 >gi|257086747|ref|ZP_05581108.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis D6] gi|256994777|gb|EEU82079.1| tRNA CCA-pyrophosphorylase [Enterococcus faecalis D6] gi|315027269|gb|EFT39201.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX2137] Length = 406 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 95/408 (23%), Positives = 182/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRSLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ ++ +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLLYYYQQDSQVQ----VTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|225386499|ref|ZP_03756263.1| hypothetical protein CLOSTASPAR_00246 [Clostridium asparagiforme DSM 15981] gi|225047418|gb|EEG57664.1| hypothetical protein CLOSTASPAR_00246 [Clostridium asparagiforme DSM 15981] Length = 401 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 102/404 (25%), Positives = 172/404 (42%), Gaps = 24/404 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ LN+ ++ IVGG VRD L+N D DI T+ LP +V +F ++ + T I Sbjct: 11 RIIGQLNEHGYEAYIVGGCVRDMLLNREPGDWDITTSALPGQVKELF----HRTVDTGIQ 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ K+ +++TT R D DGR+ K V FT + D RRDFTINA+ ++ Sbjct: 67 HGTVTVMVGKEGYEVTTFRVDGEYEDGRHPKSVSFTPNLTEDLKRRDFTINAMAYNKATG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GG+ DLR I+ +G+ R ED LRILR RF A G I+ A Sbjct: 127 FVDEFGGVEDLRRGIIRCVGEPMDRFTEDALRILRAIRFSAQLG-FEIEERTQEAIRVIA 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEISLDQLSQVIE 251 L +S ER+ E+ KLL + +P I +Y GI + + F ++ + Sbjct: 186 PNLAKVSKERVQVELTKLLCSAHPER-IALVYETGISRYVSGTFDEIYGMGTIPPIPTAI 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 Q LR+ + ++ K L + + + + P Sbjct: 245 PPQKH-------LRWAAFLRKATPDQAFTVLKDLKLDNDTISRVKTLVDLLGRPLVPEKP 297 Query: 312 EIKKLFYLYGDKVMIAKLKI------FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 ++++ + L + F ++ + ++ D + Sbjct: 298 ALRRVMSRIEPALYDDLLDLKDALLPFGVPETGDMLRRARALSGEIRRDGDCLDLKSLAV 357 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G DV+ G+ PGK VG L + + + +++ L L+ Sbjct: 358 KGRDVMDAGVKPGKAVGEALAVLLELVLEDPSRNTRDYLLQHLK 401 >gi|188580718|ref|YP_001924163.1| polynucleotide adenylyltransferase [Methylobacterium populi BJ001] gi|179344216|gb|ACB79628.1| Polynucleotide adenylyltransferase region [Methylobacterium populi BJ001] Length = 421 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 129/401 (32%), Positives = 209/401 (52%), Gaps = 13/401 (3%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L+ + + +VGG VRD+L+ V DID+ATT+LP+ VM K +PT I +G Sbjct: 28 LAALDAPGEATRLVGGCVRDALLGSIVSDIDLATTLLPEAVMERAGAAGIKAVPTGIEHG 87 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 TI ++ R + ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D +G++ D Sbjct: 88 TITLVVRGEPHEVTTLREDVETDGRHAVVRFGRDFSRDAERRDFTINALSLDARGRLHDT 147 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA R+ ED LR+LRFFRF A YG D++GL A+I A+ L Sbjct: 148 TGGVADLAAGRVRFIGDAATRLREDALRLLRFFRFHARYGRGAPDAEGLAAAIAARGSLD 207 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A + A+ + G+ I E+ +L++ AE Sbjct: 208 RLSRERVRAEFLKLLLAPRAVAAVATLSETGLLLRILGGTGELG--RLARAAGAE----P 261 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF---NQKTLSIPEIKK 315 +D+ RF L + + + + + L R L + ++ ++ + Sbjct: 262 ALDATARFAAL-AVRTSEDADRLQARLRLSRAEHARLTDYAAALAALHDRPDIAAEAVPA 320 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L ++G + + L +T + + ++ +P+FP+TG D+V G+ Sbjct: 321 LVAIHGAEPLREALIALDGEPRPRVTAEARAALDRM---ARAGTRPVFPVTGADLVARGL 377 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PPG+ VG L ++ W+ E L+ + + +++ Sbjct: 378 PPGRGVGLGLKAARELWLAEGCPDDAEARERLIARALEAAK 418 >gi|56417163|ref|YP_154237.1| poly (A) polymerase [Anaplasma marginale str. St. Maries] gi|222475528|ref|YP_002563945.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Florida] gi|56388395|gb|AAV86982.1| poly (A) polymerase [Anaplasma marginale str. St. Maries] gi|222419666|gb|ACM49689.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Florida] Length = 419 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 181/386 (46%), Gaps = 10/386 (2%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K D ++ I+ + + +VGG VRDS++ DID+AT ++P+ V++ Sbjct: 4 KLVADPGVVRIVEAIEGARGNARLVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAG 63 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K IPT I +GT+ + ++ITTLR DL DGR+A V FT W D+ RRDFT NAL Sbjct: 64 IKTIPTGIKHGTVTAVVAGIPYEITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 Y D+ GK+ DY G+ DL NRT+ FIGDA RI ED+LRILR FRF A +K+ S+ + Sbjct: 124 YCDKSGKIYDYFSGMQDLENRTVVFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEI 183 Query: 188 VASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 + K L LS ERI SE KLL N + + M G+ ++ + + +L Sbjct: 184 IFLCNKYADSLAKLSRERIRSEFFKLLACTNCASTLKIMEGCGVLHQVVP--YPVQIGRL 241 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 S A + K+ ++L+ L + S + + N F Sbjct: 242 SCTHLAGRAPITKLAAILKGYAHTDMSGTVEGLEALLRLSRKEKKLLETLLTTNLPF--- 298 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 LS + +K G V + + L+ L + P++ Sbjct: 299 PLSTTQQQKYLNDLGTDVYRDLVIVSFLSK----ETLSASAFLEHLEYTKQFAPLSLPVS 354 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEW 392 G D+ K G GK +G+ L K+ W Sbjct: 355 GKDLAKLGYKEGKLLGHTLKRLKETW 380 >gi|84514898|ref|ZP_01002261.1| polyA polymerase family protein [Loktanella vestfoldensis SKA53] gi|84511057|gb|EAQ07511.1| polyA polymerase family protein [Loktanella vestfoldensis SKA53] Length = 380 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 133/408 (32%), Positives = 188/408 (46%), Gaps = 29/408 (7%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ V W D + LL ++ VGG VR++L+ V D+D+ T PD V + Sbjct: 1 MTRVTGAWLADPAAQLVCRLLTDAGYQAWFVGGCVRNALLGAPVADLDLTTDARPDGVTQ 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 I KVIPT I +GT+ II + F++TT R D+ TDGR A V F D+ RRD Sbjct: 61 IAKAAGLKVIPTGIDHGTVTIIAKNTPFEVTTFRRDVATDGRRAVVAFADTMLEDARRRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYA G V+D +GGL DL R ++FI DA RI EDYLRILRFFRF A YG Sbjct: 121 FTMNALYAGPDGMVVDPLGGLPDLFARRVRFIEDAEQRIREDYLRILRFFRFHAWYGADG 180 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID D L A GL LS ER+ +E+ KLL A +P A+ M G+ +I Sbjct: 181 IDPDALAACAANTDGLASLSRERVTAEMLKLLAAPDPAPAVASMAAAGVLGQILPGADAA 240 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 L+ ++ E + R L D L ++K+ +L Sbjct: 241 ---PLAVLVHIEAAVGLLPSPIRRLGAL--GGDPVGALRLSKRDAL-------------- 281 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + S + +L Y +G + I I A+ + L + + Sbjct: 282 -TLEHMRSDLPVPELAYRHGAEAAINAAAITAAVLGHELD-------TNIDKNAQFAASQ 333 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 FPL D++ G +G + + WI S F L++ +L LR Sbjct: 334 AFPLQAVDLMPD--LQGPALGQAMKKAEAAWIASGFTLTKTELLLRLR 379 >gi|307278077|ref|ZP_07559161.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0860] gi|306505474|gb|EFM74660.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX0860] Length = 406 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWA-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAILEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|42519026|ref|NP_964956.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii NCC 533] gi|73619783|sp|Q74JK7|CCA_LACJO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|41583313|gb|AAS08922.1| poly(A) polymerase [Lactobacillus johnsonii NCC 533] Length = 398 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 95/398 (23%), Positives = 175/398 (43%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T Sbjct: 13 ALPVLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 69 IKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVD 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A Sbjct: 129 GNIIDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+ A A + G+ +E+ + L+ + Sbjct: 188 NHELLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEV--PGFRGKKENLALYPQL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + I+L+ + K + M K + +++FF+ + + Sbjct: 246 NFSPTTEANLWALMIILLKLPNDKIPHFMRMWKNSNAMERQVADIVAFFDLISSHAPNNY 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G + +++ + + L + ++ + + G + Sbjct: 306 D-----LYKAGLETIVSTIDLAHILG----QPVNGSALVDSYEALPIKNNRDLVIDGHFL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K GIP G +VG +L K+ + ++ + + Sbjct: 357 LKNGIPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFI 394 >gi|118477089|ref|YP_894240.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis str. Al Hakam] gi|118416314|gb|ABK84733.1| poly(A) polymerase [Bacillus thuringiensis str. Al Hakam] Length = 400 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 86/399 (21%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 10 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 66 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 126 GEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 185 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYN 243 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 244 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 300 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + + + + + + +TG+D++ Sbjct: 301 V--LLYKTGIHIAEMSERVYEA-MIESYDNTSVKRVQTLFEALPIKSRQEMNVTGNDLLN 357 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ + ++ + + +E + L++ Sbjct: 358 WANKKPGPWVAEMIQNIEEAIVQGNVVNEKECIREWLQE 396 >gi|206970696|ref|ZP_03231648.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH1134] gi|206734332|gb|EDZ51502.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH1134] Length = 397 Score = 292 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 176/398 (44%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D G ++ R I +G+A R ED LR++R RF + G +++ A Sbjct: 123 GKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLEMKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 HGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLAIRTRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A+ + L + I ++ +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEAMIESYDPTSVERVQLMFHALPIQ-ERQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + PG V +L ++ + + +E + L+ Sbjct: 355 WANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 392 >gi|329115963|ref|ZP_08244680.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus parauberis NCFD 2020] gi|326906368|gb|EGE53282.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Streptococcus parauberis NCFD 2020] Length = 403 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 100/399 (25%), Positives = 177/399 (44%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + ++ VGG VRD L++ + D+DIAT+ P IF +T + Sbjct: 13 ALPILKKIKDAGFQAYFVGGGVRDILLDRPIHDVDIATSSYPQETKNIFERT----VDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL D++N+ ++ +G A R ED LRI+R FRF A + +I+ + VA Sbjct: 129 GQIIDAFTGLEDIKNKELRAVGKAEERFEEDALRIMRGFRFSATL-DFSIEKETFVAMCS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + + N + + + + ++E Sbjct: 188 HAPLLEKISVERSFIEFDKLLIADKWKRGLRLLINAKAHLYL-PGLANKESELRNVLLEV 246 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 F + + LI +S K + + + + N + LS Sbjct: 247 ADDFIYSNSPQA-WANLILTLQVESPKEFLKSWKTSNDFQKIVTKMINLYQIR--LSSSY 303 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K Y YG + + L + I + ++I K + G ++K Sbjct: 304 NKSTIYKYGKDLA----YLCENLREAKGLEAEYNLIDEFDKELIIHDKHEICVNGGTLIK 359 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +G+ PG ++G++L + + S + D+ + K Sbjct: 360 EFGMKPGPQLGSLLKKIEIAIVEGSLANQKADILAFVAK 398 >gi|163795185|ref|ZP_02189153.1| poly A polymerase family protein [alpha proteobacterium BAL199] gi|159179583|gb|EDP64112.1| poly A polymerase family protein [alpha proteobacterium BAL199] Length = 413 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 182/366 (49%), Gaps = 11/366 (3%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + VGG VRD+++ L + D+D+ T P+RVM + K +PT I +GT+ ++ Sbjct: 32 ARFVGGCVRDAVLGLPIGDLDVCTPARPERVMALVRAAGLKAVPTGIEHGTVTVVADHIP 91 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRN 147 ++TTLR D+ TDGR A V FT DW D+ RRD T+NALY D G + D G GL D R Sbjct: 92 VEVTTLRRDVETDGRRAVVAFTDDWAEDAARRDLTLNALYLDPDGTIYDPTGQGLVDARA 151 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 I+F+GDA RI ED LRILRFFRF+A +GE+ D GL A + LS ER+W+ Sbjct: 152 GRIRFVGDAETRIREDVLRILRFFRFWARFGEEPPDPVGLAACAALASRVPSLSGERVWA 211 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ KL+ A A+ M G+ ++ +++ + VIE EQ K D++ R Sbjct: 212 ELAKLVVACRAAEALSAMAAAGVAACLWPGSADVA--RAVTVIEIEQSLGLKADAVRRLA 269 Query: 268 VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 +I ++ + L R + F S PE + Y G + + Sbjct: 270 AMIGAVG--NVEPAVSRLRLSRSEADRVRRAFRTE-GGPASSGPERRARIYRAGSQAYLD 326 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 ++ A + + Q + W P+FP+ G+DV G+PPG G +L Sbjct: 327 ARVLYTAAEREPVEA-----LAQDSALAQAWTPPVFPIGGNDVAALGVPPGPTTGRLLRL 381 Query: 388 CKQEWI 393 + WI Sbjct: 382 VEDAWI 387 >gi|332360707|gb|EGJ38516.1| polyA polymerase family protein [Streptococcus sanguinis SK49] Length = 399 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 107/400 (26%), Positives = 187/400 (46%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GLNDL NR ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFHGLNDLENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ E Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFE 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ K + RE + + ++ Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQNVKGFLKDWKTSREFAKKVEDLVEIAAIRSERNLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y I L+ L + D I + + + K + G ++ Sbjct: 304 --KRDCYDYD----IDLLQQAEELRHAQGLAVDFSAIQNLDASLTIHNKQEMAVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ + E ++ + + Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGHLPNNLEAIYAYIEE 397 >gi|196046561|ref|ZP_03113785.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus 03BB108] gi|225863499|ref|YP_002748877.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus 03BB102] gi|254813686|sp|C1EN33|CCA_BACC3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|196022494|gb|EDX61177.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus 03BB108] gi|225787215|gb|ACO27432.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus 03BB102] Length = 397 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 86/399 (21%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYN 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + + + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMSERVYEA-MIESYDNTSVKRVQTLFEALPIKSRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ + ++ + + +E + L++ Sbjct: 355 WANKKPGPWVAEMIQNIEEAIVQGNVVNEKECIREWLQE 393 >gi|288905503|ref|YP_003430725.1| tRNA nucleotidyltransferase [Streptococcus gallolyticus UCN34] gi|288732229|emb|CBI13794.1| tRNA nucleotidyltransferase [Streptococcus gallolyticus UCN34] Length = 401 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 97/401 (24%), Positives = 179/401 (44%), Gaps = 18/401 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF ++ + Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKGIF----HRTVDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL DL + ++ +G+ R ED LRI+R FRF A + +I+ D A Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASL-DFDIEPDTFAAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVI 250 L+ +S ER + E +KLL A I M K + +L+ +L QL + Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMITSQAQKYLPYLENAHDNLQQLLDDL 246 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + F+ + ++ + +D + L K S ++ +++ + + + Sbjct: 247 ACDYHFKTSEQAWSALLLALDVKDVRVFLKAWKTSSQFQKDVEKIVAIYRFRLENELDKM 306 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y YG ++ + D I ++ ++ K + G + Sbjct: 307 E-----MYRYGSCLIEQAEDLRAGFGL----PVDFERIERLDKELTIHDKHEIVINGGVL 357 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +K PG ++G +L +++ + +E + +RK Sbjct: 358 IKELQYKPGPELGRVLKEIEEKIVLGELANDKEAIFDFIRK 398 >gi|329667440|gb|AEB93388.1| poly(A) polymerase [Lactobacillus johnsonii DPC 6026] Length = 398 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 174/396 (43%), Gaps = 16/396 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT I T Sbjct: 13 ALPVLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 69 IKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVD 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A Sbjct: 129 GNIIDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+ A A + G+ +E+ + L + Sbjct: 188 NHELLSKISVERIRDEFVKMGIAPGSQKAFQIFLDTGLSEEVPGFRGKKENLALYPQLNF 247 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + +L+ ++ + + M K + +++FF+ + + Sbjct: 248 SPTNEANLWALMIILLKLPNDKIPHFMRMWKNSNAMERQVADIVAFFDLISSHAPNNYD- 306 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 Y G + +++ + + L + ++ + + G ++K Sbjct: 307 ----LYKAGLETIVSTIDLAHILG----QPINGSALVDSYEALPIKNNRDLVIDGHFLLK 358 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 GIP G +VG +L K+ + ++ + + Sbjct: 359 NGIPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFI 394 >gi|47565999|ref|ZP_00237037.1| polyA polymerase [Bacillus cereus G9241] gi|47556916|gb|EAL15246.1| polyA polymerase [Bacillus cereus G9241] Length = 397 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGQLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYN 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTSVNRVQTLFQALPIKSRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|328946152|gb|EGG40297.1| polyA polymerase family protein [Streptococcus sanguinis SK1087] Length = 399 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 105/400 (26%), Positives = 188/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFERT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL NR ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A N + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRNGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LASDFCFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFANKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQA----QGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ + + Sbjct: 358 QEFGFEPGPKLGQILKELEYAIVDGHLPNDLETIYAYIEE 397 >gi|320108593|ref|YP_004184183.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Terriglobus saanensis SP1PR4] gi|319927114|gb|ADV84189.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Terriglobus saanensis SP1PR4] Length = 457 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 96/461 (20%), Positives = 178/461 (38%), Gaps = 63/461 (13%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V + ++ L + + VGG VRD LM + +D D+AT PD V+++F Sbjct: 8 VSESASQQKAALRVVERLRGVQFSAYFVGGCVRDLLMGHAPKDYDVATNACPDAVIKLFR 67 Query: 65 KTRYKVIPTSISYGTIKII-CRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRD 121 +T P +G + + ++ T R+D DGR +V + + D LRRD Sbjct: 68 RT----FPVGAHFGVVIVCDNDGSQTEVATFRADGAYEDGRRPTEVRYADTPQVDVLRRD 123 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTIN + D G+V+D+VGG +DL + ++ IG R ED LR+LR RF A +G Sbjct: 124 FTINGMMMDPVTGEVLDFVGGRDDLEAKILRAIGTPQVRFEEDKLRMLRAVRFAARFG-F 182 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ L A + +S+ER+ E+ ++L + A + G+ +E+ +V + Sbjct: 183 TLEPRTLQAIQAQAPTINQVSNERVRDELTRMLTEGHARRAFELLDETGLLREVLPEVAK 242 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLR-----------------FIVLISWQDKKSILS--- 280 + + ++ F + D + + L+ K Sbjct: 243 M------KGVQQPPQFHPEGDVWIHTLLLLEKLQAGCSMELGWAALLHDVGKPPTFRAPD 296 Query: 281 -----------------------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 + + + + + + + + L Sbjct: 297 PTHAKPRIRFDGHAEIGTTMARTICNRLRMSNDETEQICLLVANHMRFGDVMQMKPATLK 356 Query: 318 YLYGDKVMIAKLKIFL---ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 + L++ + + +L D + K LF LTG D++ G Sbjct: 357 RFFRLPKFDEHLRLHWMDASSAHGDLRLYDFAKQQYESAPPDTIKPALF-LTGRDLIDAG 415 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + PG + +L + + E + +LLR+L+AS+ Sbjct: 416 LKPGPRFKLLLEQIEDAQLEGRITTKAEAI-NLLRELLASN 455 >gi|227879118|ref|ZP_03997002.1| tRNA CCA-pyrophosphorylase [Lactobacillus crispatus JV-V01] gi|256843154|ref|ZP_05548642.1| tRNA nucleotidyltransferase [Lactobacillus crispatus 125-2-CHN] gi|256850247|ref|ZP_05555676.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-1A-US] gi|262046361|ref|ZP_06019323.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-3A-US] gi|293380227|ref|ZP_06626308.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus crispatus 214-1] gi|295692908|ref|YP_003601518.1| cca-adding enzyme [Lactobacillus crispatus ST1] gi|227861275|gb|EEJ68910.1| tRNA CCA-pyrophosphorylase [Lactobacillus crispatus JV-V01] gi|256614574|gb|EEU19775.1| tRNA nucleotidyltransferase [Lactobacillus crispatus 125-2-CHN] gi|256712884|gb|EEU27876.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-1A-US] gi|260573232|gb|EEX29790.1| tRNA nucleotidyltransferase [Lactobacillus crispatus MV-3A-US] gi|290923194|gb|EFE00116.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus crispatus 214-1] gi|295031014|emb|CBL50493.1| CCA-adding enzyme [Lactobacillus crispatus ST1] Length = 399 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 95/397 (23%), Positives = 180/397 (45%), Gaps = 18/397 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T Sbjct: 14 AMPVLQILENAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D + Sbjct: 70 IKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDTR 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL+DL+N I+ +GD R ED LR++R RF + E ++S A Sbjct: 130 GQIVDLFNGLDDLKNHVIRAVGDPEKRFHEDALRMMRAVRFMSQL-EFKLESKTQQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S ERI E KL + A + + + DV + + I Sbjct: 189 NHKLLKKISVERIREEFVKLGLGPHARQAFQVFLDTNLSE----DVPDFGGKKDQLAIFP 244 Query: 253 EQVFEWKIDSLLRFIVLISWQDK-KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F +++ L ++++ + + I + + + + N + + Sbjct: 245 QLKFSPTMENSLWSLIILLLKLPNEQIHRFMRDWKNSNAMTEQVERIINLFDLLSSHAPS 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + + +L G++ +I + + + + ++ + K + G ++ Sbjct: 305 DYE--LFLAGEETLINTIDVAHIVG----QPISSEALVDRYMALPIKKASELAVDGRFLI 358 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ PG K+G L ++ ++ + +QE + L Sbjct: 359 DRGMRPGAKLGQTLNKIRELVVSGEVENNQEAIESYL 395 >gi|295090763|emb|CBK76870.1| tRNA nucleotidyltransferase/poly(A) polymerase [Clostridium cf. saccharolyticum K10] Length = 430 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 182/401 (45%), Gaps = 18/401 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL L ++ VGG VRD+++N D DI T+ P V +F K + T + + Sbjct: 20 ILKKLRDSGYEAFAVGGCVRDTILNRIPGDWDITTSAKPVEVKAVF----GKTVDTGLQH 75 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ +I ++ITT R D DGR+ +V FT D + D RRDFTINA+ + + Sbjct: 76 GTVTVIRDHVGYEITTYRIDGEYEDGRHPREVEFTSDLREDLRRRDFTINAMAYSPETGL 135 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG+ DL+NRTI+ +G+A R ED LRI+R RF + + +I+ + A Sbjct: 136 VDIFGGMEDLKNRTIRCVGNAVERFGEDALRIMRAVRFASQL-DFSIEEETYRALSGIAP 194 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEISLDQLSQVIEA 252 L +S ERI E+ K L + P ++ M + G+ + F + + + + E Sbjct: 195 NLAHVSKERIQVELTKTLLSGRP-QGVLVMEDTGMCPYMTAGFPGIFSKARESGINLEER 253 Query: 253 EQVFEWKI-DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + + LR+ V + +K ++ ++ L + + + P Sbjct: 254 LKRSALLPQEKSLRYAVFLGHLGEKGACTILRELKLDNDTIRRVKTLVRFMEETLPEDGP 313 Query: 312 EIKKLFYLYGDKVMIAKLK----IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 ++++ D + + L +F + L + C ++ D I K +TG Sbjct: 314 ALRRMMSQMEDSLFDSLLLMRKTVFPEQMEDVLKTESRCRRVRERGDCIRLK--DLAVTG 371 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +D++ G+ PGK++G L + + ++ +E L Sbjct: 372 NDLIAAGMKPGKEMGERLRYLFELVLSEPALNEKELLLKAA 412 >gi|325971141|ref|YP_004247332.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta sp. Buddy] gi|324026379|gb|ADY13138.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta sp. Buddy] Length = 452 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 118/428 (27%), Positives = 187/428 (43%), Gaps = 48/428 (11%) Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 G IVGGAVRD L+ L ++D D T LPD+VM +F VIPT I +GT+ + Sbjct: 19 DGGFSLYIVGGAVRDHLLGLKIEDYDFTTDALPDQVMHLFK----TVIPTGIEHGTVTVH 74 Query: 84 CRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVG 140 K+ F++TT RS+ DGR+ V F + + D RRDFTINA AD G ++D+ G Sbjct: 75 FEKQSFEVTTFRSEAEYLDGRHPSSVSFIPNLEEDLKRRDFTINAFAADCTNGHILDFHG 134 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G DL+N+TI+ IG+ R ED LRILR R A +ID + A + KK L + Sbjct: 135 GKEDLKNKTIRAIGNPIQRFEEDALRILRAARIAAKLN-FSIDDQTVSAMQEMKKNLSKV 193 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLSQVIE 251 S+ERI E+ KL+ + +P + ++ GI I + ++ D LS I Sbjct: 194 SAERIRDELFKLVLSNHPATGLTYLRTQGILTLIIPEFKQADGLYQGGMHHEDVLSHCIS 253 Query: 252 AEQVFEWKIDSL-LRFIVLISWQDKKSI---------------------LSMAKKFSLPR 289 A Q SL +R L+ K + ++ K+ Sbjct: 254 ACQASVLVASSLEVRLACLLHDIGKSEVVVASESRNTFAKHELVGENITQTILKRLKASN 313 Query: 290 EIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-------NL 340 E + + + Q S +++ G + ++ +A L Sbjct: 314 EQIHAVSHLVRHHMFDYQSNWSDSAVRRFITRVGLAFIPLLFQVRIADQIAIHGKANTLL 373 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 + I +L + G+D++ GIP G+++G L + + ++ Q + Sbjct: 374 LDELKLRIEAILQSHDALSIKDLAVNGNDLMSVGIPKGQRIGTTLTYLLETVLDDPRQNT 433 Query: 401 QEDLHHLL 408 ++ L L Sbjct: 434 RDTLLKLA 441 >gi|206974941|ref|ZP_03235856.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus H3081.97] gi|206746960|gb|EDZ58352.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus H3081.97] Length = 397 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 89/399 (22%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + A+ + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHL-PYLQMSEEKLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFEADIEAWAFFLYCIGEEHPAVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTAVNRVQTLFQALPIKNRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|116617867|ref|YP_818238.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271932|sp|Q03Y57|CCA_LEUMM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116096714|gb|ABJ61865.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 401 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 177/405 (43%), Gaps = 25/405 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D IL+ L ++ VGG+VRD+++ ++ D+DIA++ P+ V +F T + T Sbjct: 12 DAQPILTKLEDAGFEAYFVGGSVRDTMLGKTIHDVDIASSAFPEEVKSLFHNT----VDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R + TD R V F R + D RRDFTINAL Sbjct: 68 GIQHGTVMVLDHGTGYEITTFRVESTYTDFRRPDHVTFVRSLEEDLKRRDFTINALAMRH 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+V+D GL D++ I+ +GDA R ED LR++R RF A G NI++D A + Sbjct: 128 DGEVLDLFDGLEDMKKGVIRAVGDAEKRFTEDALRMMRALRFSAQLG-FNIEADTQKALV 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEIS--LDQLSQ 248 L ++ ER+ E KLL ++ + + +++ S +D L++ Sbjct: 187 DLAPNLAKIAVERVRVEFEKLLLGSQASQSLELALRDQVMNYLPGPHIEDWSSIIDDLNK 246 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 W + + DKK M + + R + + + N K Sbjct: 247 DQATNYTVAWA-----HILSRTQFDDKKRRQFMYD-WKMSRNVMKTVNAIVPIVHNPKKS 300 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++ +I +V+ + ++ L + I ++ + K ++G Sbjct: 301 TVFDIY--------QVLAYQEELLEVLSLTGSQPETIQRISHIIEMLPITKAADLNISGG 352 Query: 369 DVVKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++++ GI PG +G +L + + + L ++ + Sbjct: 353 ELIRSGILTPGPLLGRVLKKIEYAVVVGDILNDHDALEKFAKEYV 397 >gi|227432250|ref|ZP_03914246.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352023|gb|EEJ42253.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 401 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 178/405 (43%), Gaps = 25/405 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D IL+ L ++ VGG+VRD+++ ++ D+DIA++ P+ V +F T + T Sbjct: 12 DAQPILTKLEDAGFEAYFVGGSVRDTMLGKTIHDVDIASSAFPEEVKSLFHNT----VDT 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R + TD R V F R + D RRDFTINAL Sbjct: 68 GIQHGTVMVLDHGTGYEITTFRVESTYTDFRRPDHVTFVRSLEEDLKRRDFTINALAMRH 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+V+D GL D++ I+ +G+A R ED LR++R RF A G NI++D A + Sbjct: 128 DGEVLDLFDGLEDMKKGVIRAVGNAEKRFTEDALRMMRALRFSAQLG-FNIEADTQKALV 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEIS--LDQLSQ 248 L ++ ER+ E KLL ++ + + +++ S +D L++ Sbjct: 187 DLAPNLAKIAVERVRVEFEKLLLGSQASQSLELALRDQVMNYLPGPHIEDWSSIIDDLNK 246 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 W + + DKK M + + R + + + N K Sbjct: 247 DQATNYTVAWA-----HILSRTQFDDKKRRQFMYD-WKMSRNVMKTVSAIVPIVHNPKKS 300 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 ++ +I +V+ + ++ L + I ++ + K ++G Sbjct: 301 TVFDIY--------QVLAYQEELLEVLSLTGSQPETIQRISHIIELLPITKAADLNISGG 352 Query: 369 DVVKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++++ GI PG +G++L + + + L ++ + Sbjct: 353 ELIRSGILTPGPLLGHVLKKIEYAVVVGDILNDHDALEKFAKEYV 397 >gi|324991235|gb|EGC23169.1| polyA polymerase family protein [Streptococcus sanguinis SK353] gi|325687387|gb|EGD29408.1| polyA polymerase family protein [Streptococcus sanguinis SK72] Length = 399 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 188/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A + +++ D VA Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LASDFFFSA-SEQAWAALLLALDVQNVKDFLKKWKTSREFANKVQDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQAQGLAV----DFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +G PG K+G IL + ++ E ++ + + Sbjct: 358 QVFGFEPGPKLGQILKELEYAIVDGRLPNELEAIYAYIEE 397 >gi|222095266|ref|YP_002529326.1| tRNA cca-pyrophosphorylase [Bacillus cereus Q1] gi|254813687|sp|B9IVQ9|CCA_BACCQ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|221239324|gb|ACM12034.1| polyA polymerase [Bacillus cereus Q1] Length = 397 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 89/399 (22%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GKMVDLFAGQEAIQKREIMTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + A+ + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHL-PYLQMSEEKLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFEADIEAWAFFLYCIGEEHPAVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTAVNRVQTLFQALPIKNRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|324511430|gb|ADY44759.1| tRNA-nucleotidyltransferase 1 [Ascaris suum] Length = 494 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 124/408 (30%), Positives = 197/408 (48%), Gaps = 17/408 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +L + L + + + GGAVRD LM L DID A+ P ++ +F++ + Sbjct: 52 LFTPELKKLNDLFIANKFQLRMAGGAVRDLLMGLRPADIDFASDATPSQMKELFTREGIR 111 Query: 70 VI-PTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++ +GTI K+ F+ITTLR D++ DGR AKV FT DW+ D+ RRD TIN+L Sbjct: 112 MLNKNGEEHGTITCRIDDKENFEITTLRIDVVCDGRRAKVEFTTDWQLDANRRDLTINSL 171 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSD 185 + + G VIDY GG+ DLR R + F+GDA RI EDYLRILR+FRFF + + Sbjct: 172 FLELDGTVIDYFGGIEDLRARRVAFVGDATQRIQEDYLRILRYFRFFGRIAKSGDAHEQT 231 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY-NGGIFKEIFLDVQEISLD 244 L A I K+GL +S ERIWSE+ K+ + + + M G+ + L Sbjct: 232 TLDAIINNKQGLMNISGERIWSELKKICVGRFGGDVLTTMVSRCGLASLL-------GLP 284 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLIS--WQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + V ++F + D L + ++S +++++ I K+ L + Sbjct: 285 EDCDVATCREIFNYNSDRSLEPMTVLSALFKNQQDIDVFHKRCKLSNAEKSLAEFIVEKR 344 Query: 303 FNQKT--LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 ++ S K L Y K KI L C +++ +I WK Sbjct: 345 DEARSNIDSTKYFKDLILDYEKAPGRDKKKINGRDMVRELAKY-VCASAEIIEEIGVWKM 403 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P FP++G D++ G+ G + +L H + W S ++ +++L + Sbjct: 404 PEFPVSGKDLIGTGVKTGPIMRRVLTHLFELWKKSEYKAERDELLSHI 451 >gi|332366640|gb|EGJ44383.1| polyA polymerase family protein [Streptococcus sanguinis SK1059] Length = 399 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 188/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFERT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL NR ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + D++E S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE-FLPDLKE-SRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQAQGLAV----DFSAIQNLDASMTIHSKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ + + Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGHLPNDLEAIYAYIEE 397 >gi|91199952|emb|CAJ72994.1| similar to poly(A) polymerase [Candidatus Kuenenia stuttgartiensis] Length = 437 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 95/431 (22%), Positives = 170/431 (39%), Gaps = 51/431 (11%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I I+ L + GG VRD +M D DIAT LP VM +F KT Sbjct: 6 NAIEIVKTLQDKGFDALFAGGCVRDMIMRRESADYDIATNALPHDVMNLFKKT----FSV 61 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ- 131 YG + ++ F++ T R++ +DGR+ V + D RRDFTIN L D Sbjct: 62 GTQYGVVVVVKDGHNFEVATFRTEKSYSDGRHPDYVSFSTAEEDVRRRDFTINGLLYDPV 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +++DYVGG +D+ I+ IGD R+ ED LR++R RF + +I + A I Sbjct: 122 KKEMLDYVGGRDDIAAGIIRTIGDPVERLTEDKLRMIRAVRFACRFN-FHIHEETRQAII 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + ++S+ERI E+ K++ NP I + + +EI +V E+ + + Sbjct: 181 NLAPQIHVVSAERIREELQKIITGPNPHLGIQLLDELCLLREILPEVSEM------KGVR 234 Query: 252 AEQVFEWKIDSLLRFIVLISWQD------------------------------------K 275 + F + D ++ +S + Sbjct: 235 QPENFHPEGDVFTHTLLCLSKMENPSWTLAMGVLLHDMGKPRTFQELDRIRFNLHEKVGA 294 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 + + + +I + K + KL L+ + ++ Sbjct: 295 DITAKICNRLKTSNADKERIIWLVLKHLCFKDAKKMRLNKLKRLFAHEAYKELEELCRID 354 Query: 336 HYNNLTHQDTCFILQVLSDIIHWK--KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 + + + + + + + KP +TG D++ G+ PG +IL + E + Sbjct: 355 ALASSGDLSDYYFCREMFEKLSKEEVKPKPLITGHDLIAIGLTPGPAFKHILTKIEDEQL 414 Query: 394 NSSFQLSQEDL 404 + + +E L Sbjct: 415 DGNITTKEEAL 425 >gi|116492835|ref|YP_804570.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pediococcus pentosaceus ATCC 25745] gi|122265701|sp|Q03F94|CCA_PEDPA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116102985|gb|ABJ68128.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pediococcus pentosaceus ATCC 25745] Length = 396 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 100/402 (24%), Positives = 178/402 (44%), Gaps = 18/402 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D +L + + VGG+VRD+L+N + D+DIA++ P + IF KT + Sbjct: 6 EDARAVLQKIEDAGFDAFFVGGSVRDTLLNKPIHDVDIASSAYPAEIKHIFKKT----VD 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ +I + +++TT R++ D R +V F R K D +RRDFTINA Sbjct: 62 TGIEHGTVMVIHDGEGYEVTTFRTESGYQDFRRPDQVTFVRSLKEDLMRRDFTINAFALK 121 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + VID GL+DL ++ I+ +GD H R ED LR++R RF + + I++ L A Sbjct: 122 EDRTVIDIFDGLSDLEHKIIRAVGDPHERFHEDALRMMRAVRFASQL-DFKIEAKTLKAI 180 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L +S ERI E K++ P + M + + ++ S +L Q+ Sbjct: 181 EENNMLLGKISVERILVEFEKMMLGSKPNRGLEDMLTTKLNEYC-PGFKDRS-KELDQLT 238 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + I + ++ K++ ++ + + K Sbjct: 239 KYPLKLLENPEQVWTMIAWSLKLTPQEVMPFLKQWKTSNDLIKNVSATLQVLSMDKNDQN 298 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + G+ ++ +++ L N DT LQ+ +TG ++ Sbjct: 299 ERLA--LFNAGEANVVNAIRVAQILGMNREAWLDTYQNLQIKD------THEMAITGKEL 350 Query: 371 VKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 ++ G I PG ++G +L K IN + L + + KL Sbjct: 351 IQKGIIKPGPQMGQVLNRLKLMVINDELKNESLALLNAVNKL 392 >gi|332637876|ref|ZP_08416739.1| CCA-adding enzyme [Weissella cibaria KACC 11862] Length = 405 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 173/407 (42%), Gaps = 20/407 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + ++ VGG+VRD+L+ + D+DIAT+ P+ V +F +T + T Sbjct: 13 ALPILETIEAAGFEAYFVGGSVRDTLLGKPIHDVDIATSAYPEEVKALFERT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ + ++ TT R++ TD R +V F R D RRDFT+NA + Sbjct: 69 IEHGTVMILDHGQGYETTTFRTESTYTDFRRPDEVTFVRSLAEDLKRRDFTVNAFALTKD 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL+D+ N ++ +G+A R ED LR++R RF A + I++ L A Sbjct: 129 GEIIDMFDGLSDMDNHILRAVGEAEERFHEDALRMMRAVRFAAQL-DFKIEAATLQAIKD 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L ++ ER E KLL+ K ++ M + + + ++ + +D + Sbjct: 188 NAPLLANIAIERTNVEFTKLLQGKAARYGLLEMIATNLNQYM-PGLEVVDIDLIGYAELL 246 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS--FFNCNFNQKTLSI 310 + +V + + KK+ ++ + + ++ Sbjct: 247 ADAQPQNDVAAWTLLVFELGLTPEDAVVFLKKWKQSNDMVKTIKASIKLLNKLRLGDVAA 306 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++ + + + +AKL + D + D+ K G ++ Sbjct: 307 WDLYEAGNAIDNVLAVAKLSELVV---------DVAGLKSRYEDLKIKNKGELAFNGGNL 357 Query: 371 -VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + G+ PG G IL +Q+ + S + L + + ++ Sbjct: 358 TKELGMQPGPLFGKILATLEQKVVAGDLNNSHDVLLAEAQTMAEKAK 404 >gi|296116685|ref|ZP_06835295.1| putative tRNA nucleotidyltransferase [Gluconacetobacter hansenii ATCC 23769] gi|295976897|gb|EFG83665.1| putative tRNA nucleotidyltransferase [Gluconacetobacter hansenii ATCC 23769] Length = 434 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 125/392 (31%), Positives = 199/392 (50%), Gaps = 20/392 (5%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + +VGGAVRD L +V D+D+AT + P VM +V+PT +++GT+ + + Sbjct: 57 ARLVGGAVRDLLCGRTVSDMDMATALPPQDVMARLGAAGIRVVPTGLAHGTVTAVLEGRP 116 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ++ITTLR D TDGR+A+V +T DW+ D+ RRDFTINA+ D+ G V D GG DL Sbjct: 117 YEITTLRRDEQTDGRHAQVAWTDDWREDAARRDFTINAMSCDRAGVVHDPFGGRADLAAG 176 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++F+GDAH RI ED LRILRFFRF A YG D+D + A+ ++ LS ERIWSE Sbjct: 177 RVRFVGDAHARITEDALRILRFFRFNARYGGDVPDADAMAAATALAPMVERLSVERIWSE 236 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 + ++L + M +GG+ I + ++S +L +++ D+LLR Sbjct: 237 LRRILSGPRVAATLALMEHGGVLARILPEGYDLS--RLGRLLACY----GPADALLRCAA 290 Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGD 322 L + +A++ L R F+ + + + ++ EI ++ Sbjct: 291 LFVG----DMQVVAQRLRLSRADERFVRAVHDGALHGGGDGLHPGMTGAEIARMLVADPT 346 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382 ++IA+ L + + + + I +P+F L G DVV G PPG +VG Sbjct: 347 DILIARTW----LRQGEVLGRPDVGWDDLRAIITRCPRPVFTLAGRDVVAAGCPPGPRVG 402 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 IL + W++ + LR ++ + Sbjct: 403 AILAQVRDWWLSGGCVADRVACLAHLRHVLGA 434 >gi|325694589|gb|EGD36498.1| polyA polymerase family protein [Streptococcus sanguinis SK150] Length = 399 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 188/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQAQGLAV----DFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ +++ Sbjct: 358 QEFGFEPGPKLGQILKELEHAIVDGCLPNELEAIYAYIKE 397 >gi|315169724|gb|EFU13741.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1342] Length = 406 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 182/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID + G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLLDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPMM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|227529198|ref|ZP_03959247.1| tRNA adenylyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350873|gb|EEJ41164.1| tRNA adenylyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 403 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 96/412 (23%), Positives = 175/412 (42%), Gaps = 30/412 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L + ++ VGG VRD+++ S+ DIDIAT+ P + IF++T + Sbjct: 11 EPARPVLQKIEDAGFEAYFVGGCVRDTILGDSIHDIDIATSAYPSEIKAIFNRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R KV F R D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDFRRPDKVTFVRSLSEDLKRRDFTINALALK 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G+VID GL+DL++ IK +GD + R ED LR++R RF + + I ++ L Sbjct: 127 ENGEVIDLFNGLDDLKHHLIKAVGDPNERFHEDALRMMRAVRFASKL-DFVIAAETLAGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-------DVQEISL 243 + L+ ++ ERI E KLL +NP+ + G+++ ++ + L Sbjct: 186 KQNAALLEKIAVERIRVEFEKLLMGQNPVAGLNEFLQTGLYQYC-PGLVGKQTELSGLLL 244 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 Q+ AEQ + + L D + + + E+ + + Sbjct: 245 LNNWQLRNAEQAWAVIVTQL--------GLDSRDASKFLRSWKTSNEL---ITNVKKMIP 293 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 + L ++ L + + + L+ + + +++ + Sbjct: 294 VIQGLRSKKLSPLTFFTAGRNAVQDANQVAKLYGWAIPDEQ---LMKQYDSLPIKSGKEL 350 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + G ++ G+ PG +G I+ + +N +E L + K+ Sbjct: 351 AVNGGVLINDAGVKPGPLLGKIIKKLTVQVVNGELPNDRETLINEAEKIKKE 402 >gi|114585225|ref|XP_526118.2| PREDICTED: tRNA nucleotidyl transferase, CCA-adding, 1 isoform 4 [Pan troglodytes] Length = 346 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 106/355 (29%), Positives = 181/355 (50%), Gaps = 13/355 (3%) Query: 59 VMRIFSKTRYKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 + +F ++I +GTI ++ F+ITTLR D+ TDGR+A+V FT DW+ D+ Sbjct: 1 MKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDA 60 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRD TIN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ Sbjct: 61 ERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRI 120 Query: 178 GEK--NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 +K + D + L A + KGL +S ERIW E+ K+L + + I +Y+ + I Sbjct: 121 VDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIG 180 Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295 L SL++ +V + F K +L L QD + L + + + +E + Sbjct: 181 LPANA-SLEEFDKVSKNVDGFSPKPMTL--LASLFKVQDDVTKLDL--RLKIAKEEKN-- 233 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + F + + + Y D ++ ++ L +Q +L ++ Sbjct: 234 LGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEH---CLLKEM 290 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 W P FP++G D+ K GI GK++G +L +++W S +Q+ +++L ++K Sbjct: 291 QQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK 345 >gi|319400808|gb|EFV89027.1| poly A polymerase head domain protein [Staphylococcus epidermidis FRI909] Length = 400 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 100/406 (24%), Positives = 171/406 (42%), Gaps = 26/406 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + K+ VGG+VRD +M + D+DI T+ +PD + IF KT IP Sbjct: 7 EQAKPILKKIQNKGFKAYFVGGSVRDYIMQRPIHDVDITTSAMPDEIESIFDKT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + ++ITT RS+ I R ++V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFQNDNYEITTFRSEDEYINHRRPSEVYFVRDLYQDVQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ DY G D++NR I+ +G R ED LRI+R RF + + IDSD L A Sbjct: 123 LNYQLYDYFNGQQDIKNRVIRTVGVPSERFAEDALRIIRGLRFQSQLNFQ-IDSDTLHAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ LS ER+ E+ KL+ N + M N F I + Sbjct: 182 SSHISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNYI----------PFFKSF 231 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E + + + +I ++ Q K + + + + + + + Sbjct: 232 EMSHLHIDEPITFELWIAILIVQQPKDVQ--LSSLKISNQEKATIKKWITLIQTLPKIQS 289 Query: 311 PE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-----LQVLSDIIHWKKPLFP 364 + + L Y Y K + L + L N LT + I + + + Sbjct: 290 KQSLITLVYDYNLKDIEILLSLHHLLKQNGLTTANHLIINEISVREANKKLPIHCRKELA 349 Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G D++ + G + + L + I++ ++E++ + Sbjct: 350 INGKDILNHTNKNSGPWLKDTLREIEIAVISNQIANTKEEILEWVD 395 >gi|332361335|gb|EGJ39139.1| polyA polymerase family protein [Streptococcus sanguinis SK1056] Length = 399 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 188/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFERT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL NR ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDINLLLQAEELRQAQGLAV----DFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ +++ Sbjct: 358 REFGFEPGPKLGQILKELEYAIVDGYLPNDLEVIYAYIKE 397 >gi|296502205|ref|YP_003663905.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis BMB171] gi|296323257|gb|ADH06185.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis BMB171] Length = 400 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 174/398 (43%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 10 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 66 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D G ++ R I +G+A R ED LR++R RF + G +++ A Sbjct: 126 GKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLEMKTKQAIET 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 185 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYK 243 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 244 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRTRKEKDWDT 300 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + + + ++ +TG+D++ Sbjct: 301 V--LLYKTGIHIAEMAERVYEA-MIERYDPTSVERVQSMFHALPIQERQEMNVTGNDLLN 357 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + PG V +L ++ + + +E + L+ Sbjct: 358 WANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 395 >gi|71910486|ref|YP_282036.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes MGAS5005] gi|73619883|sp|Q9A0A5|CCA_STRP1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|71853268|gb|AAZ51291.1| poly(A) polymerase/tRNA nucleotidyltransferase [Streptococcus pyogenes MGAS5005] Length = 402 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 187/404 (46%), Gaps = 18/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 13 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENGGEYEITTFRTEDIYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+ + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 129 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEAITFEAMRS 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER ++E +KLL A + I M + + L QE L+ L ++ Sbjct: 188 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + ++ ++ +D KS L K + + + ++ ++ S Sbjct: 248 DNFTFSDYHQAWAYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSFE 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG K+ + L D I + ++ K L G ++ Sbjct: 305 KLD--IYQYGKKMA----SLVEDLRKAQSLSVDMDRINTLDQALVIHDKHDIVLNGSHLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K +G+ G ++G +L + + + +R+ +A+ Sbjct: 359 KDFGMKSGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELAT 402 >gi|312977290|ref|ZP_07789038.1| poly A polymerase [Lactobacillus crispatus CTV-05] gi|310895721|gb|EFQ44787.1| poly A polymerase [Lactobacillus crispatus CTV-05] Length = 399 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 94/397 (23%), Positives = 180/397 (45%), Gaps = 18/397 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T Sbjct: 14 AMPVLQILENAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D + Sbjct: 70 IKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDTR 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL+DL+N I+ +GD R ED LR++R RF + E ++S A Sbjct: 130 GQIVDLFNGLDDLKNHVIRAVGDPEKRFHEDALRMMRAVRFMSQL-EFKLESKTQQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L+ +S ERI E KL + A + + + DV + + I Sbjct: 189 NHKLLEKISVERIREEFVKLGLGPHARQAFQVFLDTNLSE----DVPDFGGKKDQLAIFP 244 Query: 253 EQVFEWKIDSLLRFIVLISWQDK-KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F +++ L ++++ + + I + + + + N + + Sbjct: 245 QLKFSPTMENSLWSLIILLLKLPNEQIHRFMRDWKNSNAMTEQVERIINLFDLLSSHAPS 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + + +L G++ +I + + + + ++ + K + G ++ Sbjct: 305 DYE--LFLAGEETLINTIDVAHIVG----QPISSEALVDRYMALPIKKASELAVDGRFLI 358 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ PG K+G L ++ ++ + +QE + L Sbjct: 359 DRGMRPGAKLGQTLNKIRELVVSGEVENNQEAIESYL 395 >gi|15674894|ref|NP_269068.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes M1 GAS] gi|13622033|gb|AAK33789.1| putative poly(A) polymerase [Streptococcus pyogenes M1 GAS] Length = 397 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 187/404 (46%), Gaps = 18/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL+ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + Sbjct: 8 ALPILTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ Sbjct: 64 IEHGTVLVLENGGEYEITTFRTEDIYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDEN 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+ + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 124 GQVIDKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEAITFEAMRS 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER ++E +KLL A + I M + + L QE L+ L ++ Sbjct: 183 HSPLLEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLK 242 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + ++ ++ +D KS L K + + + ++ ++ S Sbjct: 243 DNFTFSDYHQAWAYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSFE 299 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y YG K+ + L D I + ++ K L G ++ Sbjct: 300 KLD--IYQYGKKMA----SLVEDLRKAQSLSVDMDRINTLDQALVIHDKHDIVLNGSHLI 353 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 K +G+ G ++G +L + + + +R+ +A+ Sbjct: 354 KDFGMKSGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELAT 397 >gi|329850304|ref|ZP_08265149.1| tRNA-nucleotidyltransferase 1 [Asticcacaulis biprosthecum C19] gi|328840619|gb|EGF90190.1| tRNA-nucleotidyltransferase 1 [Asticcacaulis biprosthecum C19] Length = 401 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 132/406 (32%), Positives = 199/406 (49%), Gaps = 19/406 (4%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCI--VGGAVRDSLMNLSVQDIDIATTILPDR 58 M IV S + + L K C+ VGG VR+ L+ + D+D++T + PD Sbjct: 1 MTRIVLTDAMKASGTRAVFAALEARGGKGCVRFVGGCVRNVLLGVPGSDLDLSTQLTPDE 60 Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 S + +PT YGTI + + ++IT+LR D+ TDGR A V +T W D+ Sbjct: 61 TEAALSAAGMRHVPTGKDYGTITAVVDGEPYEITSLREDVETDGRRAVVSYTTVWAKDAQ 120 Query: 119 RRDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDF +NALYAD +G V D G GL D+ R ++FIG+A RI EDYLRILRFFRF A Y Sbjct: 121 RRDFYVNALYADIEGLVYDPTGHGLADIAERRVRFIGEAQMRIREDYLRILRFFRFTAGY 180 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++D D L A I + G+ LS ER++ E K L NPL A M +GGI I Sbjct: 181 A-LSVDPDSLQACIALQAGIDGLSGERLFGETMKTLSLANPLLAFEAMQSGGILSRIVPG 239 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS---WQDKKSILSMAKKFSLPREIRYF 294 + + E + D+ R + L+ I S + + I Sbjct: 240 WILVG----EGLPELRAMITHSDDAERRLMALVDSGLGLGVNEIKSAQARLKFSQAIGER 295 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 +I+ + + +I +L Y +G + + + + A+H + H+ +L++++D Sbjct: 296 MIAAGDVVTRLEAAEAGDIARLIYRHGRQAVEDAV-LLAAVHGDGQPHE----LLRLMAD 350 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 I P FPL G D++ G+ G +VG L + EW+ + F S Sbjct: 351 ID---VPKFPLKGSDLIARGMTAGPEVGQRLKQIEAEWLAADFAQS 393 >gi|159046029|ref|YP_001534823.1| CCA-adding enzyme [Dinoroseobacter shibae DFL 12] gi|157913789|gb|ABV95222.1| CCA-adding enzyme [Dinoroseobacter shibae DFL 12] Length = 382 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 129/404 (31%), Positives = 182/404 (45%), Gaps = 28/404 (6%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 ++L +L + VGG VR++L+ V D DIAT LP +V + Sbjct: 5 ASRLSHPGAQHVLGVLTGAGHAAYFVGGTVRNALIGAPVTDFDIATAALPQQVQTLAEDA 64 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 KV+ T I +GT+ ++ K F++TT R D+ TDGR A V F +D D+ RRDFT+NA Sbjct: 65 GIKVVATGIDHGTLTLVLDKTPFEVTTFRRDVATDGRRATVAFAKDVAEDARRRDFTMNA 124 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDS 184 LYA G+V+D +GGL DL R ++FI D RI EDYLRILRFFRF A YG+ K ID+ Sbjct: 125 LYATAAGEVVDPLGGLPDLEARKVRFIDDPEARIREDYLRILRFFRFTAWYGDPAKGIDA 184 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +GL A GL+ LS+ER+ +E+ KLL A +P A+ M GI + + +L Sbjct: 185 EGLTACAALADGLQTLSTERVTAELLKLLAAPDPAPAVASMGQSGILSRVLPGAADTALA 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 L + E + D L R L L + L + + + Sbjct: 245 PL---VHLEPTLDLAPDGLRRLAALGGDAGG---------LRLSKVQARHLATLRSESGG 292 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 T L G + L + A + SDI FP Sbjct: 293 NDT-----ALHLGQRLGPETAAEVLALRAASLGQPIPP-------NARSDIARGAAATFP 340 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + D+ G +G L + W S F+L +E L L Sbjct: 341 VRAADLPAD--LEGPAIGAALGILEAAWRASDFRLDREALLARL 382 >gi|209559222|ref|YP_002285694.1| tRNA CCA-pyrophosphorylase [Streptococcus pyogenes NZ131] gi|209540423|gb|ACI60999.1| tRNA nucleotidyltransferase [Streptococcus pyogenes NZ131] Length = 386 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 102/400 (25%), Positives = 186/400 (46%), Gaps = 18/400 (4%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 ++ + + ++ VGG+VRD L+ + D+DIAT+ P+ IF++T + I +G Sbjct: 1 MTKIKEAGYEAYFVGGSVRDVLLERPIHDVDIATSSYPEETKAIFNRT----VDVGIEHG 56 Query: 79 TIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVI 136 T+ ++ ++ITT R++ + D R +V F R + D RRDFT+NAL D+ G+VI Sbjct: 57 TVLVLENGGEYEITTFRTEDVYVDYRRPSQVSFVRSLEEDLKRRDFTVNALALDENGQVI 116 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D GL DL+ + ++ +G A R ED LRI+R FRF A + +I++ A Sbjct: 117 DKFRGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASL-DFDIEATTFEAMRSHSPL 175 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAEQV 255 L+ +S ER ++E +KLL A + I M + + L QE L+ L ++ Sbjct: 176 LEKISVERSFTEFDKLLMAPHWRKGISAMIACQAYDYLPGLKQQEAGLNHLIVSLKDNFT 235 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 F + ++ ++ +D KS L K + + + ++ ++ S ++ Sbjct: 236 FSDHHQAWTYVMISLAIEDPKSFL---KAWKTSNDFQRYVTKLIALYRIRQERSFEKLD- 291 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YG 374 Y YG K+ + L D I + ++ K L G ++K +G Sbjct: 292 -IYQYGKKMA----SLVEDLRKAQSLSVDMDHINTLDQALVIHDKHDIVLNGSHLIKDFG 346 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + PG ++G +L + + + +R+ +A+ Sbjct: 347 MKPGPQLGLMLEKVELAIVEGRLDNDFTTIEAFVREELAT 386 >gi|163939453|ref|YP_001644337.1| tRNA CCA-pyrophosphorylase [Bacillus weihenstephanensis KBAB4] gi|226702039|sp|A9VME7|CCA_BACWK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|163861650|gb|ABY42709.1| Polynucleotide adenylyltransferase region [Bacillus weihenstephanensis KBAB4] Length = 397 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 181/399 (45%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIEMLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G +R + I +GDA R ED LR++R RF + G +++ A Sbjct: 123 GEMVDLFAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLG-FSLEIKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL +N + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVNGLQELVETKLFSHL-PYLQMSEERLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE +++ F+ I + L +++ + +++ ++K Sbjct: 241 WDSFETDVEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLAIRSRKEKEWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 I L Y G ++ +++ A+ + + + + + +TG+D++ Sbjct: 298 I--LLYKTGIRIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVTGNDLLS 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V +L + ++ + +ED+ L++ Sbjct: 355 WTDKKPGPWVAEMLQNIEEAIVQGDLVNKKEDIREWLQR 393 >gi|171778267|ref|ZP_02919473.1| hypothetical protein STRINF_00315 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282967|gb|EDT48391.1| hypothetical protein STRINF_00315 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 401 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 176/400 (44%), Gaps = 16/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF ++ + Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIF----HRTVDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL DL+ + ++ +G+ R ED LRI+R FRF A + +I+ + A Sbjct: 128 TGLIIDKFNGLADLKAKLLRAVGNPAERFNEDALRIMRGFRFSASL-DFDIEPETFAAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A I M K + E + D L Q ++ Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMIASEAQKYL--PHLENAHDHLQQFLD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 S + L+ D K + + + + + + + + + T + Sbjct: 245 DLADDYHFKTSEQAWAALLLALDVKDVRAFLRAWKTSSQFQKDVEKIVSIYRFRLTNELD 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 +++ Y L++ L D I ++ ++ K + G ++ Sbjct: 305 KMEMYCYGCNLIEQAEDLRLGFGL------PVDFATIERLDKELTIHDKHEIVVNGGMLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K PG ++G IL +Q + +E + +RK Sbjct: 359 KEMQFKPGPELGQILKAIEQHIVLGELANDKEAIFEFIRK 398 >gi|218896565|ref|YP_002444976.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus G9842] gi|226702036|sp|B7IPB4|CCA_BACC2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|218543355|gb|ACK95749.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus G9842] Length = 397 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 176/398 (44%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSALG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLAIRTRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + + + + + +TG+D++ Sbjct: 298 V--LLYKTGIYIAEMAERVYEA-MIESYNPTSVKRVQSMFHALPIQGRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + PG V ++L ++ + + +E + L+ Sbjct: 355 WANKKPGPWVADMLQKIEEAIVKGNVVNEKERIREWLQ 392 >gi|30019684|ref|NP_831315.1| tRNA CCA-pyrophosphorylase [Bacillus cereus ATCC 14579] gi|218234591|ref|YP_002366317.1| tRNA CCA-pyrophosphorylase [Bacillus cereus B4264] gi|73619742|sp|Q81FP0|CCA_BACCR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|226702037|sp|B7HHU0|CCA_BACC4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|29895228|gb|AAP08516.1| Poly(A) polymerase [Bacillus cereus ATCC 14579] gi|218162548|gb|ACK62540.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus B4264] Length = 397 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 174/398 (43%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D G ++ R I +G+A R ED LR++R RF + G +++ A Sbjct: 123 GKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLEMKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRTRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + + + ++ +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIERYDPTSVERVQSMFHALPIQERQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + PG V +L ++ + + +E + L+ Sbjct: 355 WANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 392 >gi|210623839|ref|ZP_03294088.1| hypothetical protein CLOHIR_02039 [Clostridium hiranonis DSM 13275] gi|210153334|gb|EEA84340.1| hypothetical protein CLOHIR_02039 [Clostridium hiranonis DSM 13275] Length = 448 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 103/442 (23%), Positives = 186/442 (42%), Gaps = 57/442 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ + K ++ VGG +RDSL+ D DIAT+ P+ +M IF T + T I + Sbjct: 14 IIEKIEKNGFEAFAVGGCIRDSLLGRVPNDWDIATSAKPEDIMNIFENT----VETGIEH 69 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ K+ +++TT R D TDGR+ V FT + + D RRDFTINA+ + + Sbjct: 70 GTVTVVIDKEPYEVTTYRIDGDYTDGRHPDSVEFTENIEEDLSRRDFTINAMAYNNSTGL 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG +DL+N+ I+ +GD R ED LR++R RF A E +I++D A + Sbjct: 130 VDVFGGRDDLKNKVIRCVGDPIKRFEEDALRMMRGIRFSAQL-EFSIENDTFKAIEEMSD 188 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E K L + I+ + GI K I ++ +I + ++ A ++ Sbjct: 189 LISAVSIERINVEFTKTLMSD--AKKIMIYHESGILKNILQELYKIDSEDYNREFSAVEM 246 Query: 256 FEW--------KIDSLLRFIVLISWQDK----KSILSMAKKFSLPREIRYFLISFFNCNF 303 + K D R + ++ ++ + KK + Sbjct: 247 IKMGVNCADLCKKDLACRLAGFFIYINEAIGLENTRKILKKMRYDNKTISKACELLKYGM 306 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF---------------- 347 + + ++K L M+ L A + + Sbjct: 307 RNISNNKEDLKYLLMKLDSVEMLEDLIDLKAAEVDTYLEERKSKFEEKSEEEKKIESVGI 366 Query: 348 --------------------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + +++ + ++ + G D++ GI PGK++G +L Sbjct: 367 EVLEAFTVEALIVLNNVENTLKEIVDNGECFRVKDLDINGKDLIAAGIKPGKEIGEMLNK 426 Query: 388 CKQEWINSSFQLSQEDLHHLLR 409 +E I + +E L +++ Sbjct: 427 ILKEVIKNPDINKKEKLLEMIK 448 >gi|283798454|ref|ZP_06347607.1| poly A polymerase [Clostridium sp. M62/1] gi|291073859|gb|EFE11223.1| poly A polymerase [Clostridium sp. M62/1] Length = 430 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 182/401 (45%), Gaps = 18/401 (4%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L L ++ VGG VRD+++N D DI T+ P V +F K + T + + Sbjct: 20 LLKKLRDSGYEAFAVGGCVRDTILNRIPGDWDITTSAKPVEVKAVF----GKTVDTGLQH 75 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ +I ++ITT R D DGR+ +V FT D + D RRDFTINA+ + + Sbjct: 76 GTVTVIRDHVGYEITTYRIDGEYEDGRHPREVEFTSDLREDLRRRDFTINAMAYSPETGL 135 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG+ DL+NRTI+ +G+A R ED LRI+R RF + + +I+ + A Sbjct: 136 VDIFGGMEDLKNRTIRCVGNAVERFGEDALRIMRAVRFASQL-DFSIEEETYRALSGIAP 194 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEISLDQLSQVIEA 252 L +S ERI E+ K L + P ++ M + G+ + F + + + + E Sbjct: 195 NLAHVSKERIQVELTKTLLSGRP-QGVLVMEDTGMCPYMTAGFPGIFSKARESGINLEER 253 Query: 253 EQVFEWKI-DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + + LR+ V + +K ++ ++ L + + + P Sbjct: 254 LKRSALLPQEKSLRYAVFLGHLGEKGACTILRELKLDNDTIRRVKTLVRFMEETLPEDGP 313 Query: 312 EIKKLFYLYGDKVMIAKLK----IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 ++++ D + + L +F + L + C ++ D I K +TG Sbjct: 314 ALRRMMSQMEDSLFDSLLLMRKTVFPEQMEDVLKTESRCRRVRERGDCIRLK--DLAVTG 371 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +D++ G+ PGK++G L + + ++ +E L Sbjct: 372 NDLIAAGMKPGKEMGERLRYLFELVLSEPALNEKELLLKAA 412 >gi|262282317|ref|ZP_06060085.1| tRNA CCA-pyrophosphorylase [Streptococcus sp. 2_1_36FAA] gi|262261608|gb|EEY80306.1| tRNA CCA-pyrophosphorylase [Streptococcus sp. 2_1_36FAA] Length = 399 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 184/400 (46%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLKRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLVEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GLNDL NR ++ +G A R ED LRI+R FRF A + +++ D +A Sbjct: 128 NGQVIDLFQGLNDLENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFLAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + + FL + S L ++ E Sbjct: 187 NCAPLLEKISVERIFIEFDKLLLAPYWRKGLESLLKSNAIE--FLPDLKGSRANLERLFE 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ K + RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQNVKGFLKDWKTSREFAKRVADIVEIVTIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQA----QGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLI 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +G PG K+G IL + ++ E ++ +++ Sbjct: 358 QDFGFKPGPKLGQILKELEYAIVDGRLPNDLEAIYAYIKE 397 >gi|52143812|ref|YP_083016.1| tRNA CCA-pyrophosphorylase [Bacillus cereus E33L] gi|73619744|sp|Q63DJ6|CCA_BACCZ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|51977281|gb|AAU18831.1| poly(A) polymerase [Bacillus cereus E33L] Length = 397 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 175/399 (43%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+ ID G ++ R I +G A R ED LR++R RF + G ++++ A Sbjct: 123 GERIDLFAGQEAIQKREIVTVGTAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYN 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--LLYKTGIHIAEMAERVYEA-MIESYDHTSVERVQTLFQALPIKSRQEMDVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|157150439|ref|YP_001450406.1| tRNA CCA-pyrophosphorylase [Streptococcus gordonii str. Challis substr. CH1] gi|189081882|sp|A8AX96|CCA_STRGC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|157075233|gb|ABV09916.1| polynucleotide adenylyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 399 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 102/400 (25%), Positives = 184/400 (46%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ID GL+DL NR ++ +G R ED LRI+R FRF A +++ D L A Sbjct: 128 NGQLIDLFQGLDDLENRILRAVGTPAERFNEDALRIMRGFRFQATLN-FDLEQDTLSAMT 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L Q+ E Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLEQLFE 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F + S + L+ + + + + RE + + + Sbjct: 245 LDSDFCFSA-SEQAWAALLLALKTQEVQRFLRIWKTSREFAKRVADIVEIVTIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQAQGLAV----DFSAIHNLDASLTIHSKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +G PG K+G IL + ++ E ++ +++ Sbjct: 358 RDFGFEPGPKLGQILKELEYAIVDGHLPNDLEAIYAYIKE 397 >gi|217959117|ref|YP_002337665.1| tRNA CCA-pyrophosphorylase [Bacillus cereus AH187] gi|226702038|sp|B7HL50|CCA_BACC7 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|217063697|gb|ACJ77947.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus cereus AH187] Length = 397 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 177/399 (44%), Gaps = 15/399 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + A+ + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHL-PYLQMSEEKLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFEADIEAWAFFLYCIGEEHPAVFL---RQWKFSNKKIKDIVAVLLTIRKRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G + +++ A + H + + + + +TG+D++ Sbjct: 298 V--FLYKTGIHIAEMAERVYEA-MIESYDHTAVNRVQTLFQALPIKNRQEMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG V ++ ++ + + +E + L++ Sbjct: 355 WASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 393 >gi|329725402|gb|EGG61885.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis VCU144] Length = 400 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 99/406 (24%), Positives = 168/406 (41%), Gaps = 26/406 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + K+ VGG+VRD +M + D+DI T+ PD + IF KT IP Sbjct: 7 EQAKPILKKIQNKGFKAYFVGGSVRDYIMQRPIHDVDITTSATPDEIESIFDKT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + ++ITT RS+ I R ++V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFQNDNYEITTFRSEDEYIDHRRPSEVYFVRDLYQDVQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ DY G D+ NR I+ +G R ED LRI+R RF + + IDSD L A Sbjct: 123 LNYRLYDYFNGQQDINNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLHAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ LS ER+ E+ KL+ N + M N F I + Sbjct: 182 SSQISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNYI----------PFFKSF 231 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E + + + ++ ++ Q K I + + + + + + Sbjct: 232 EMSHLHIDEPITFELWVAILIVQQPKDIQ--LSTLKISNQEKATIKKWVTLIQTLPKIQS 289 Query: 311 PE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFP 364 + + L Y Y + L + L N LT + I + + + Sbjct: 290 KQSLITLVYDYNLNDIEILLSLHHLLKQNGLTTANHLIINEISIREANEKLPIHCRKELA 349 Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G D++ + G + + L + I++ ++E++ + Sbjct: 350 INGKDILNHTNKNSGPWLKDTLREIEIAVISNQIANTKEEILEWVD 395 >gi|317055702|ref|YP_004104169.1| metal dependent phosphohydrolase [Ruminococcus albus 7] gi|315447971|gb|ADU21535.1| metal dependent phosphohydrolase [Ruminococcus albus 7] Length = 444 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 99/435 (22%), Positives = 175/435 (40%), Gaps = 48/435 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ +L + ++ IVGG VRD++M + D D+ T PD +++IFS + I T + + Sbjct: 12 VIEILEQNGYEAYIVGGCVRDAMMGVEPHDYDVCTDCTPDDMVKIFS--GFHTIETGLKH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++TT RSD TD R V F D K D RRDFT+NA+ + + Sbjct: 70 GTLTVMSEHMPVEVTTYRSDGEYTDHRRPDSVKFETDLKEDLKRRDFTVNAMCFNPKNGT 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G NDL + I+ +G+A R ED LRI+R RF + + I+ A K Sbjct: 130 VDLFDGRNDLNEKVIRCVGNAEDRFDEDALRIMRALRFASTL-DFRIEEYTAAAMRKKSH 188 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L +S+ERI+SE+ KLL K + + I I ++ + + + V Sbjct: 189 LLNAISAERIFSELKKLLCGKAVCR--IMLEYSDIIGVILPEIIPCIGCEQNNIHHCYDV 246 Query: 256 FEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMAKKF 285 +E + D LR +L K ++ + Sbjct: 247 YEHICHSIKYIEADEDLRLTMLFHDIGKPQKKVTDDDGVDHFKLHQLCSGDIAEAVLTRL 306 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 + + S + N+ +K+ Y + + LK+ A + Sbjct: 307 KSSNKTLKRVRSLVIEHDNRIYPKRRSVKRFISKYDHEFYVDWLKVRRADTLAQSEYMRA 366 Query: 346 CFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + ++ ++ K + G DV+ G G ++ N L I+ Sbjct: 367 EKLAELDQLEKLGEEIKEEMCCLKTSDLAINGHDVIALGFK-GAEIKNALNAALDAVIDE 425 Query: 396 SFQLSQEDLHHLLRK 410 + ++ L L++ Sbjct: 426 VIENERDALLGYLKE 440 >gi|254796995|ref|YP_003081832.1| poly A polymerase family protein [Neorickettsia risticii str. Illinois] gi|254590230|gb|ACT69592.1| poly A polymerase family protein [Neorickettsia risticii str. Illinois] Length = 392 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 129/401 (32%), Positives = 205/401 (51%), Gaps = 24/401 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 DL ++ ++ ++ VGG VRD L+ + DID+ATT+ P++ +R IP Sbjct: 9 EDLRTLVQIIRNNGGEARFVGGCVRDQLLGRKISDIDLATTLKPEKAIRALKINGLVTIP 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 T + +GT ++ + +ITTLR DL DGR+A V FT WK D+ RRDFT NA+Y D + Sbjct: 69 TGLKHGTFTVLVNSRAIEITTLRQDLQCDGRHATVSFTDSWKKDAQRRDFTFNAMYMDIE 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G + DY GL DL+NR +KF+G+ H RI EDYLRILR FRF A + + + L A K Sbjct: 129 GNIYDYFSGLEDLQNRRLKFVGEPHQRIEEDYLRILRAFRFQASICKTPLSEEILHACTK 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLD-QLSQVI 250 +K + LS ERI E+ KLL N L+ + M I E+ V LD + S++I Sbjct: 189 YRKKISSLSGERIQGEMFKLLSYVNFLSTVFTMQEAKIIDEVLGAKVSFSGLDYEKSRLI 248 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILS-MAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + D + +LI + L + ++ + +++ + +K + Sbjct: 249 Q---------DHIAALTLLIRNTESSYNLQWLYSRWRISKKVHQAISILLE----EKEMH 295 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P KK G+++ +KI A N LT+ + V++ + ++P+FP+ G D Sbjct: 296 CP--KKTLAKLGNELTRKLIKILYA--ENKLTNTQHKNFMLVIN---NSERPIFPVMGRD 348 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ G G ++G L + W SS LS+ +L + + Sbjct: 349 LIPLGYT-GPEIGKKLKQLEYLWRESSCALSKNELLLMATE 388 >gi|312877400|ref|ZP_07737365.1| tRNA adenylyltransferase [Caldicellulosiruptor lactoaceticus 6A] gi|311795874|gb|EFR12238.1| tRNA adenylyltransferase [Caldicellulosiruptor lactoaceticus 6A] Length = 394 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 102/396 (25%), Positives = 182/396 (45%), Gaps = 18/396 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F KT IPT Sbjct: 7 EPMKVIKTLNQHGFKAYLVGGCLRDYLLSKEPEDFDIATDAKPEDVIHLFEKT----IPT 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 63 GIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHPD 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++ A Sbjct: 123 EGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQL-SFVIENKTFEALKS 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S ERI E++K LE+KN + +Y + I + +I L + + Sbjct: 182 LKDLLKKISQERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYL----YLSQV 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + F + D I + + ++ + CN+ S + Sbjct: 238 DFDFIPTKFKVPAFFACLR--DNTLIEKLMRDLKFEKKKINAAVKL--CNYLTMECSQDK 293 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + K + +K L L + H+ + + K L+G+D++ Sbjct: 294 LVKKIFFEEEKEAEEILTTISILKSD---HRILQIFNDLKRENKLIHKKDVQLSGEDLLV 350 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ G+ +G +L + + + + +++++ + + Sbjct: 351 LGLR-GEMIGKVLNSVYEYILENPERNNKDEILNYV 385 >gi|296446273|ref|ZP_06888219.1| Polynucleotide adenylyltransferase region [Methylosinus trichosporium OB3b] gi|296256174|gb|EFH03255.1| Polynucleotide adenylyltransferase region [Methylosinus trichosporium OB3b] Length = 409 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 133/409 (32%), Positives = 200/409 (48%), Gaps = 5/409 (1%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + D + + + L ++ IVGGAVRDSLM ++D+ATT LP+ VM + Sbjct: 4 RLLADPKIRRLFAALAATGGETRIVGGAVRDSLMGRRPHEVDLATTALPEAVMAAAAAAG 63 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K PT I +GT+ I+ F++TTLR D+ T GR+AKV F D++AD+LRRDFTINAL Sbjct: 64 LKCAPTGIEHGTVTIVVEGTPFEVTTLREDVETFGRHAKVRFGDDFEADALRRDFTINAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + G + DY GGL DL R I+FIGD RI ED+LR+LRFFRF A +G +D GL Sbjct: 124 SLSEDGALHDYTGGLADLEARHIRFIGDPATRIAEDHLRVLRFFRFHASFGAGALDPAGL 183 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A+I A+ L+ LS+ER+ +E KLL A+ + + GI + + V +L Sbjct: 184 HAAILARHSLQKLSAERLRAETLKLLAARGAVAVAREVSQAGILEIV---VGATFPARLE 240 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR-EIRYFLISFFNCNFNQK 306 ++ E +D LLR I L + + + ++ L E + + Sbjct: 241 RLAAIEDALGRFVDPLLRLIALCVIVE-EDADRLRERLRLSNIEHKRAASAARLLAKLHG 299 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + P L L + A H N D L+ + P FP+ Sbjct: 300 AETAPSELDLTRLLFVEGRDAARDALALAHAENRAPVDDDGFLRAARFLAEAPAPDFPVK 359 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 D++ G+ PG+ +G +L + +WI + F + L+ + S Sbjct: 360 AADLMARGLLPGRALGAVLKELQAKWIRAGFPKDPAIVTRLVEEATTSR 408 >gi|327462287|gb|EGF08614.1| polyA polymerase family protein [Streptococcus sanguinis SK1] Length = 399 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 188/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKVAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A + +++ D VA Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQATL-DFDLEQDTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQA----QGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ + + Sbjct: 358 QEFGFEPGPKLGQILKELEHAIVDGCLPNDLEAIYAYIEE 397 >gi|88608101|ref|YP_506524.1| polyA polymerase family protein [Neorickettsia sennetsu str. Miyayama] gi|88600270|gb|ABD45738.1| polyA polymerase family protein [Neorickettsia sennetsu str. Miyayama] Length = 392 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 127/404 (31%), Positives = 204/404 (50%), Gaps = 25/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 DL ++ ++ ++ VGG VRD L+ + DID+ATT+ P+ +R IP Sbjct: 9 EDLRTLVQIIRNNGGEARFVGGCVRDQLLGRKISDIDLATTLKPEEAIRALKTNGLVTIP 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 T + +GT ++ + +ITTLR DL DGR+A V FT WK D+ RRDFT NA+Y D + Sbjct: 69 TGLKHGTFTVLVNSRPIEITTLRQDLHCDGRHATVSFTDSWKEDAQRRDFTFNAMYIDIE 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G + DY GL DL+NR +KF+G+ H RI EDYLRILR FRF A + + + L A K Sbjct: 129 GNIHDYFSGLEDLQNRRLKFVGEPHQRIEEDYLRILRAFRFQASICKTPLSEEILHACTK 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLD-QLSQVI 250 +K + LS ERI E+ KLL N L+ + M I E+ V LD + S++I Sbjct: 189 YRKKISSLSGERIQGEMFKLLSYVNFLSTVFTMQEAKIIDEVLGAKVSFSGLDYEKSRLI 248 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILS-MAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + D + +LI + L + ++ + ++++ + +K + Sbjct: 249 Q---------DHIAALTLLIRNTENSYNLQWLYSRWRISKKVQKAISILSE----EKEMH 295 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P KK G+++ + I A + + + ++ S+ +P+FP+ G D Sbjct: 296 CP--KKTLAKLGNELTRKLINILYAENKLSDIQRKDFMLVTNNSE-----RPIFPVMGRD 348 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL-LRKLI 412 ++ G G ++G L + W SS LS+ +L + +RK + Sbjct: 349 LIPLGYT-GPEIGKKLKQLEYLWRESSCVLSKNELLLMAIRKQV 391 >gi|324995700|gb|EGC27612.1| polyA polymerase family protein [Streptococcus sanguinis SK678] Length = 399 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 188/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDIYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL NR ++ +G A R ED LRI+R FRF A + +++ D VA Sbjct: 128 NGQVIDLFQGLDDLENRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLDALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ +K+ RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQNVKGFLRKWKTSREFANKVQDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQA----QGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ + + Sbjct: 358 QEFGFEPGPKLGQILKELEYAIVDGHLPNDLETIYAYIEE 397 >gi|222529695|ref|YP_002573577.1| tRNA adenylyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222456542|gb|ACM60804.1| tRNA adenylyltransferase [Caldicellulosiruptor bescii DSM 6725] Length = 394 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 102/396 (25%), Positives = 182/396 (45%), Gaps = 18/396 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F KT IPT Sbjct: 7 EPMKVIRTLNQHGFKAYLVGGCLRDYLLSKEPKDFDIATDAKPEDVIHLFEKT----IPT 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 63 GIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHPD 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +IDY GG+ DLRN+ ++ +G+ H R ED LRILR RF I++ A Sbjct: 123 EGLIDYFGGIEDLRNKIVRCVGNPHERFFEDALRILRCIRFATQL-SFVIENKTFEALKS 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S ERI E++K LE+KN + +Y + I + +I L + + Sbjct: 182 LKHLLKKISKERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYL----YLSQV 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + F + +D + + + ++ + N + S + Sbjct: 238 DFDFIPTKFKVPAFFACL--KDGILVEKLMRDLKFEKKKINAAVKLSN--YLTIECSHDK 293 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + K + +K L L + H+ + + K L+G+D++ Sbjct: 294 LVKKIFFEEEKEAEEILTTISILKSD---HRILQIFNDLKRENKLIHKKDVQLSGEDLLV 350 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ G+ +G +L + + + + +++D+ + + Sbjct: 351 LGLR-GEMIGKVLNSVYEYILENPEKNNKDDILNYV 385 >gi|125717916|ref|YP_001035049.1| tRNA CCA-pyrophosphorylase [Streptococcus sanguinis SK36] gi|166233887|sp|A3CMU4|CCA_STRSV RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|125497833|gb|ABN44499.1| TRNA nucleotidyltransferase, putative [Streptococcus sanguinis SK36] Length = 399 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 186/400 (46%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFAKKAEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQA----QGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G IL + ++ E ++ + + Sbjct: 358 QEFGFEPGPKLGQILKELEHAIVDGCLPNDLEAVYAYIEE 397 >gi|326939253|gb|AEA15149.1| tRNA CCA-pyrophosphorylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 397 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 177/398 (44%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I+ L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P Sbjct: 7 ASSIIETLKQQGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRN----VPVG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++ Sbjct: 63 LEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEE 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G ++ R I +G+A R ED LR++R RF + G ++++ A Sbjct: 123 GEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSALG-FSLETKTKQAIET 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 182 YGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLLKATQYK 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 FE I++ F+ I + L +++ + +++ +K Sbjct: 241 WDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLAIRTRKEKDWDT 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L Y G + +++ A+ + + I ++ +TG+D++ Sbjct: 298 V--LLYKTGIYIAEMAERVYEAMIESYDPTSVKRVQSMFHALPIQGRQ-EMNVTGNDLLN 354 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + PG V ++L ++ + + +E + L+ Sbjct: 355 WANKKPGPWVADMLQKIEEAIVKGNVVNEKERIREWLQ 392 >gi|306833732|ref|ZP_07466858.1| polyA polymerase [Streptococcus bovis ATCC 700338] gi|304424069|gb|EFM27209.1| polyA polymerase [Streptococcus bovis ATCC 700338] Length = 401 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 175/400 (43%), Gaps = 16/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF ++ + Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKSIF----HRTVDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL DL + ++ +G+ R ED LRI+R FRF A + +I+ D A Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASL-DFDIEPDTFTAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A I M K + E + D L Q+++ Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMITSQAQKYL--PYLENAHDNLQQLLD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 S + L+ D K + K + + + + + + Sbjct: 245 DLACNYHFKTSEQAWAALLLALDVKDVRVFLKAWKTSSQFQKDVEQIVAIYRFRLENELD 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 +++ Y YG ++ L D I ++ ++ K + G ++ Sbjct: 305 KME--MYRYGSCLIEQAED----LRAGYGLPVDFKRIERLDKELTIHDKHEIVINGGVLI 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K PG ++G +L +++ + +E + +RK Sbjct: 359 KELQYKPGPELGQVLKEIEEKIVLGELANDKEAIFDFIRK 398 >gi|310817143|ref|YP_003965107.1| polyA polymerase family protein [Ketogulonicigenium vulgare Y25] gi|308755878|gb|ADO43807.1| polyA polymerase family protein [Ketogulonicigenium vulgare Y25] Length = 373 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 130/401 (32%), Positives = 187/401 (46%), Gaps = 33/401 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W H S L +I + L ++ VGG VR++++ D+D+AT P +V S Sbjct: 3 LDADWLHHSALQDICATLTGAGHQAWFVGGCVRNAVIGGGATDVDMATDATPAQVKAALS 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + + T I +GTI ++ + +ITT R D+ TDGR+A+VVF D D+ RRDFT+ Sbjct: 63 --GLRTVDTGIDHGTITVLTAQGPVEITTFRRDVETDGRHARVVFGTDLAEDAARRDFTM 120 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NID 183 NALYA G + D VGGL D + T++FIGDA RI EDYLRILRFFRF A YGE ID Sbjct: 121 NALYAAPDGTLADPVGGLPDALSGTVRFIGDAPTRIREDYLRILRFFRFHAWYGEAGAID 180 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +DGL A + G++ LS ER+ +E+ KLL A +P AI M G+ I L Sbjct: 181 ADGLAACAELADGIEGLSRERVGAEMRKLLSAPDPAPAIAAMAQSGVLLRILPGA---GL 237 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 L ++ E + + R I +D A+ L L N Sbjct: 238 GTLPALVHIEGLMALPPAPMRRLAA-IGGEDA------ARLLRLSNAEARVLAQMQNPQ- 289 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 + + Y YG + + + Y +L+ + K F Sbjct: 290 --------PLHEAAYRYGADIALD----MAVITYASLSQMPPADLRARAGWAAAQK---F 334 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 PL D+ G +G L + WI S F L +++L Sbjct: 335 PLKSSDLP----LSGPALGQALRAAEARWIASDFSLGKDEL 371 >gi|27468063|ref|NP_764700.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis ATCC 12228] gi|57866965|ref|YP_188604.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis RP62A] gi|282876109|ref|ZP_06284976.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis SK135] gi|293366574|ref|ZP_06613251.1| polyA polymerase [Staphylococcus epidermidis M23864:W2(grey)] gi|73619863|sp|Q8CP70|CCA_STAES RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619864|sp|Q5HP86|CCA_STAEQ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|27315608|gb|AAO04742.1|AE016747_239 putative poly(A) polymerase [Staphylococcus epidermidis ATCC 12228] gi|57637623|gb|AAW54411.1| polyA polymerase [Staphylococcus epidermidis RP62A] gi|281295134|gb|EFA87661.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis SK135] gi|291319343|gb|EFE59712.1| polyA polymerase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735392|gb|EGG71684.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis VCU045] gi|329737267|gb|EGG73521.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis VCU028] Length = 400 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 100/406 (24%), Positives = 168/406 (41%), Gaps = 26/406 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + K+ VGG+VRD +M + D+DI T+ PD + IF KT IP Sbjct: 7 EQAKPILKKIQNKGFKAYFVGGSVRDYIMQRPIHDVDITTSATPDEIESIFDKT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + ++ITT RS+ I R ++V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFQNDNYEITTFRSEDEYIDHRRPSEVYFVRDLYQDVQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ DY G D+ NR I+ +G R ED LRI+R RF + + IDSD L A Sbjct: 123 LNYRLYDYFNGQQDINNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQ-IDSDTLHAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ LS ER+ E+ KL+ N + M N F I + Sbjct: 182 SSQISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNYI----------PFFKSF 231 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E + + + +I ++ Q K I + + + + + + Sbjct: 232 EMSHLHIDEPITFELWIAILIVQQPKDIQ--LSTLKISNQEKATIKKWVTLIQTLPKIQS 289 Query: 311 PE-IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFP 364 + + L Y Y + L + L N LT + I + + + Sbjct: 290 KQSLITLVYDYNLNDIEILLSLHHLLKQNGLTTANHLIINEISIREANEKLPIHCRKELA 349 Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G D++ + G + + L + I++ ++E++ + Sbjct: 350 INGKDILNHTNKNSGPWLKDTLREIEIAVISNQIVNTKEEILEWVD 395 >gi|312793903|ref|YP_004026826.1| polynucleotide adenylyltransferase region [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181043|gb|ADQ41213.1| Polynucleotide adenylyltransferase region [Caldicellulosiruptor kristjanssonii 177R1B] Length = 394 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 102/396 (25%), Positives = 182/396 (45%), Gaps = 18/396 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ LN+ K+ +VGG +RD L++ +D DIAT P+ V+ +F KT IPT Sbjct: 7 EPMKVIKTLNQHGFKAYLVGGCLRDYLLSKEPEDFDIATDAKPEDVIHLFEKT----IPT 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I ++TT R + + R+ KV FT D RRDFTINA+ Sbjct: 63 GIKHGTVTVIINGVKIEVTTFRVEKEYENHRWPKVEFTNSLFEDLRRRDFTINAMAYHPD 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +IDY GG+ DL+N+ ++ +G+ H R ED LRILR RF I++ A Sbjct: 123 EGLIDYFGGIEDLKNKIVRCVGNPHERFFEDALRILRCIRFATQL-SFVIENKTFEALKS 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K LK +S ERI E++K LE+KN + +Y + I + +I L + + Sbjct: 182 LKDLLKKISQERINIELSKTLESKNSSYGLELLYESSVGSIIIPEYSQIYL----YLSQI 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F + F + D I + + ++ + CN+ S + Sbjct: 238 DFDFIPTKFKVPAFFACLR--DNTLIEKLMRDLKFEKKKINAAVKL--CNYLTMECSQDK 293 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + K + +K L L + H+ + + K L+G+D++ Sbjct: 294 LVKKIFFEEEKEAEEILTTISILKSD---HRILQIFNDLKRENKLIHKKDVQLSGEDLLV 350 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ G+ +G +L + + + + +++++ + + Sbjct: 351 LGLR-GEMIGKVLNSVYEYILENPERNNKDEILNYV 385 >gi|238916042|ref|YP_002929559.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium eligens ATCC 27750] gi|238871402|gb|ACR71112.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Eubacterium eligens ATCC 27750] Length = 417 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 95/413 (23%), Positives = 178/413 (43%), Gaps = 25/413 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + NI+ + + K+ VGG +RDS++ + D DI T+ +P ++ F +T + Sbjct: 11 EAVRNIIHTIEEHGFKAYAVGGCIRDSILGRNPDDWDITTSAVPSQIKTFFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ I+ K +++TT R D DGR+ K V F+ D RRDFTINA+ + Sbjct: 67 TGIAHGTVTIMIDKTGYEVTTYRIDGEYEDGRHPKSVEFSDRLVDDLCRRDFTINAMAYN 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +D GL+DL + I+ +G+ R ED LR++R RF A G ID A Sbjct: 127 DTDGFVDEFNGLDDLDAKIIRCVGEPELRFTEDALRMMRAIRFSAQLG-FTIDEATWNAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K + +S ER+ E+ K L + +P + + G+F+ I + + + I Sbjct: 186 KKLAPSISKISMERVHVELGKTLMSAHP-DYVAQYSEAGLFEPILPVIDNSLKSRYKRKI 244 Query: 251 EAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 A + D++ LR+ L + L + + + + Sbjct: 245 LA--TLQHTPDNIYLRYAALFIASTPDEAAKTLRALKLDNKTVDTVSKLVKLSKIDIEET 302 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHY---------NNLTHQDTCFILQVLSDIIH--- 357 P ++ YG + ++ +A+ N + + ++ +DI+ Sbjct: 303 EPAVRTALNQYGRDFLPLWHELMMAVIQASEDITGISNPAKVKHLLTLKRLGTDILARGD 362 Query: 358 -WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + ++G+D+++YG+ G ++G L I + + L ++ Sbjct: 363 CFTIKALDISGNDLIEYGLQ-GHEIGETLKSLLDIVIENPKLNDKATLIAMIE 414 >gi|332360748|gb|EGJ38556.1| polyA polymerase family protein [Streptococcus sanguinis SK355] Length = 399 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 191/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL+NR ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFQGLDDLKNRILQAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ E Sbjct: 187 DCASLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFE 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LDSDFRFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A + D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELREAQGLSV----DFSAIQNLDASLTIHSKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++G PG K+G +L + ++ E ++ +++ Sbjct: 358 REFGFEPGPKLGQMLKELEYAIVDGHLPNELEAIYAYIKE 397 >gi|125623783|ref|YP_001032266.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris MG1363] gi|166233862|sp|A2RJT1|CCA_LACLM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|124492591|emb|CAL97536.1| poly(A) polymerase [Lactococcus lactis subsp. cremoris MG1363] gi|300070552|gb|ADJ59952.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris NZ9000] Length = 402 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 98/404 (24%), Positives = 189/404 (46%), Gaps = 24/404 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L +++ ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I Sbjct: 13 AQPVLEKISEHGFEAYFVGGSVRDVLLGREIHDVDIATSAYPEEIKDIFPYT----IDVG 68 Query: 75 ISYGTIKIICRK---KYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I +GT+ ++ K ++++ITT R++ TD R V F RD + D RRDFT+NA Sbjct: 69 IEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFAC 128 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D +G++ID GL DL+ R + +G A R ED LRI+R RF + + I+ A Sbjct: 129 DFEGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFASTL-DFKIEEKTFSA 187 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + L+ +S ERI+ E++KLL N + + +K + D Q+++L ++ Sbjct: 188 MRERSHLLEKISVERIFIELDKLLLGSEWRNGLTLLIESEAWKYL-PDFQDLALKKVLTE 246 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + F+ + + S D K+ L +K+ + E ++ + + Sbjct: 247 LSVDFHFKNSEQAWAALLTRFSNIDVKAFL---RKWKVSNEFSKYVADLVSAYELEN--- 300 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + + +++ +LKI D + + + K + G D Sbjct: 301 WDLVSLYHFGLEKALLVDELKIAFG------RDIDRERAVFINDQLQIHDKSEIVIAGKD 354 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++ ++ + PG ++G IL +++ + + + Q + ++K++ Sbjct: 355 LMDEFSLKPGPELGKILKTIEEKIVKNELKNEQIAILTEVKKML 398 >gi|328793093|ref|XP_397254.4| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like, partial [Apis mellifera] Length = 400 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 122/426 (28%), Positives = 208/426 (48%), Gaps = 54/426 (12%) Query: 1 MVSIVQHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 ++ + + FH +L + L K + I GGAVRD LM++ D+D AT P+ Sbjct: 14 VIKKLDNPLFHSIFTPELNILAELFKKYNYELKIAGGAVRDILMDIKPLDLDFATDATPE 73 Query: 58 RVMRIFSKTRYKVIPT-SISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKA 115 + +F K ++I +GTI K F+ITTLR D TDGRYAK+ FT+DWK Sbjct: 74 EMKTMFVKENVRMINNRGERHGTITARINDKQNFEITTLRIDTHTDGRYAKIKFTKDWKL 133 Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D+LRRD TIN+++ D +GK+ DY G +DL+ R + F+G+ HRI EDYLRILR+FRF+ Sbjct: 134 DALRRDLTINSMFLDFEGKIYDYFFGYDDLQKRRVVFVGNPSHRIKEDYLRILRYFRFYG 193 Query: 176 HYGEKN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 E+ D ++A + GL+ +S ERIWSE +K+L + M I + Sbjct: 194 RIAEQPDVHDESTIIAIKENIHGLQRISGERIWSEWSKILSGNYAKELTLKMLKCNIARY 253 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---RE 290 + L + +++ V + + + + V++ +D+ + + + L R+ Sbjct: 254 VGLP-ENPNIENFKIVYDVFKKNNISLQPITFLAVML--KDENEVFQLHNRLKLSAYDRD 310 Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350 + FL ++ DK I LK + + H N Sbjct: 311 LALFLTRYWE---------------------DKPSIDLLKFYKSPHCNT----------- 338 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 FP++G+ + ++ + GK +G ++ K W++ +F+++ E+L H + + Sbjct: 339 --------HPRKFPVSGNMLKQH-VKKGKMMGIVIKELKNIWLDKNFEMNAEELLHEVPR 389 Query: 411 LIASSQ 416 +I+ + Sbjct: 390 IISELE 395 >gi|71995920|ref|NP_001023976.1| hypothetical protein F55B12.4 [Caenorhabditis elegans] gi|13548403|emb|CAB02125.2| C. elegans protein F55B12.4, confirmed by transcript evidence [Caenorhabditis elegans] Length = 436 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 120/413 (29%), Positives = 199/413 (48%), Gaps = 19/413 (4%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + L+ + L K + I GGAVRD LMN+ D+D A+T P ++ +F + Sbjct: 15 DFRTLFTPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATPTQMKEMFEE 74 Query: 66 TRYKVIPT-SISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + +++ +GTI + F+ITTLR D++ DGR A+V +T DW+ D+ RRD T Sbjct: 75 DKIRMLHKRGEEHGTITCRIDDCENFEITTLRVDIVCDGRRAQVEYTTDWQLDANRRDLT 134 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNI 182 IN+L+ D G V+DY GG+ D+ R I F+GDA RI EDYLRILR+FRFF + Sbjct: 135 INSLFLDLHGNVVDYFGGIRDIETRRIAFVGDARQRIQEDYLRILRYFRFFGRISDCTEH 194 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + D + A ++ K G+ +S+ERIW+E+ K++ + + M ++ +E + Sbjct: 195 EHDTIQAIVENKDGMAGISAERIWTELKKIVVGRMADEVLKAMIEQCELQKYLGLPKECN 254 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFF 299 L++ V F ++ + L +D+ I + L + R F++S Sbjct: 255 LERFHTVFNR---FSKTVEPMTMIACLC--EDEHQIAEFHRITKLSNDERLLGEFILSER 309 Query: 300 NC---NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 N I I L G + +L+ L ++ + + I Sbjct: 310 QSAVENLKNDDWWIDRIVDLEVRPGHENQQDRLRQRLVQLAKSVLADEER-----IQMIE 364 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +++ P FP+TG D+++ G+ G V N+L + W S F S+ L + Sbjct: 365 NFEAPKFPITGRDLMEAGVRKGPHVRNVLYYLYNLWKESRFTESKYSLLERAK 417 >gi|227535133|ref|ZP_03965182.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187178|gb|EEI67245.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 407 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 100/403 (24%), Positives = 170/403 (42%), Gaps = 24/403 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T Sbjct: 20 KAAIPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRTA----D 75 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R++ D R V F R D RRDFTINAL Sbjct: 76 TGIEHGTVMVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 135 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A Sbjct: 136 HDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAAI 194 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 K L +S ER+ +E N+LL + + +F + E +L Q SQ Sbjct: 195 ADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAY-APKMAAHETALTQFSQ 253 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + + + I L+ Q L M K + E+ + Sbjct: 254 LPDTQ--LTSLASGWAALIFLLRTQP----LVMLKAWKQSNELITLVTQTVKLLQVMPNP 307 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + Y G+ + ++ L D + + + + K LTG Sbjct: 308 TAWD----LYQAGEAAVTTASEVQKLL----TPDFDQQQLAEAYAALPIHSKKELALTGA 359 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 D++K G+ PG +G L +Q + + + L + ++ Sbjct: 360 DLIKAGVRPGPAMGKALNQIEQRVVAGALPNELKKLLPIATEM 402 >gi|42526543|ref|NP_971641.1| polyA polymerase family protein [Treponema denticola ATCC 35405] gi|41816736|gb|AAS11522.1| polyA polymerase family protein [Treponema denticola ATCC 35405] Length = 448 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 91/435 (20%), Positives = 178/435 (40%), Gaps = 48/435 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I S+ + +VGGAVRD + +D DIAT P V +F KT IPT I+ Sbjct: 11 EIASVFFNAGFSAYLVGGAVRDWFLGKPCKDYDIATDAEPKEVQALFRKT----IPTGIA 66 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QG 133 +GT+ I+ + + + TT R + +DGR + V + R + D RRDFT+NA+ G Sbjct: 67 HGTVTILYKDEKIECTTFRCEADYSDGRRPQSVNYVRSIEEDLSRRDFTMNAIAVSLKDG 126 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D G+ ++++TIK +G R ED LR +R RF + G K I+ + L A + Sbjct: 127 SIVDPFDGVKSIKSKTIKTVGSPLDRFGEDGLRPIRAIRFASQLGFK-IEEETLKAIPLS 185 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + K +S ER E K+L +++P+ ++ + + G+ K ++ + + + + Sbjct: 186 IEVCKKVSIERFRDEFVKMLLSEHPIISLKLLEDTGLLKVFLPELSDCRGVEQKGMHSFD 245 Query: 254 QVFE--------WKIDSLLRFIVLISWQDKKS----------------------ILSMAK 283 + + + ++R L K S + + Sbjct: 246 VLDHSFLSCDAAPQDNPIVRLAALFHDIGKVSTREKNEYGDYTFYKHEAVSEKLTKKIMQ 305 Query: 284 KFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 + P + + + + + +++ G + + + A + Sbjct: 306 RLKFPNKEIEEVSHLVGLHMFHYTEDWTDAAVRRFIVRAGVENIPNLFDLRRADGFGMTG 365 Query: 342 HQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 + +V+++ + G ++++ GIP G K+G IL + + Sbjct: 366 QAPDLSNLAAFKKRLEKVIAEDSALSLKDLAVGGRELMEIGIPAGPKLGIILQKLFEAVL 425 Query: 394 NSSFQLSQEDLHHLL 408 Q ++ L + Sbjct: 426 EDPSQNTKAQLLKIA 440 >gi|303239594|ref|ZP_07326119.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] gi|302592765|gb|EFL62488.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] Length = 438 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 98/437 (22%), Positives = 175/437 (40%), Gaps = 54/437 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ I+ LN K+ +VGG VRDS++N +D DI+T+ PD V +F KT I Sbjct: 11 EEVTYIIKKLNDFSFKAYVVGGCVRDSILNKQPKDWDISTSATPDEVKALFDKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 T I +GT+ ++ ++TT R+ + D RD T+N + Sbjct: 67 TGIKHGTVSVVVNNIAIEVTTFRTGSTQNN--------NCLTTDLSYRDLTMNTIAFHPS 118 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G+ D++N I+ +G+ R ED LR+LR RF A G +I+ L A + Sbjct: 119 EGLFDPYSGVEDIKNAVIRAVGNPCERFKEDPLRMLRAVRFCATLG-FDIEESTLDAIKR 177 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-------VQEISLDQ 245 +K S ERI E+ K+L + PL + + + + I + Q Sbjct: 178 NSALIKNTSQERIRDELTKILISSRPLK-LTLLRETNLLEYILPEFNLCFDITQNHPYHI 236 Query: 246 LSQVIEAEQ-VFEWKIDSLLRFIVLISWQDK----------------------KSILSMA 282 + + + + V E + + +LR+ +L+ K K + Sbjct: 237 FNVAMHSLRAVCEIENEVVLRWTMLLHDTGKALTKSTDREGIDHFYGHPDKSTKIAKDVL 296 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN---- 338 ++ + + + + ++ + G + LK+ A + Sbjct: 297 ERLKFDNKTIAKVCHLVKNHDRRIEPDYKSVRMAASVIGVESFTDLLKVQEADKKSQNPE 356 Query: 339 --NLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 N QD I ++ +DII L ++GDD+V G GK++G +L Sbjct: 357 FLNSRLQDLYKITEIYADIIKKTHCLSIKDLQISGDDLVNMGFIQGKEIGYVLNKLLYAI 416 Query: 393 INSSFQLSQEDLHHLLR 409 I+ + DL + + Sbjct: 417 IDKPELNTYSDLIKIAK 433 >gi|83942051|ref|ZP_00954513.1| polyA polymerase family protein [Sulfitobacter sp. EE-36] gi|83847871|gb|EAP85746.1| polyA polymerase family protein [Sulfitobacter sp. EE-36] Length = 367 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 26/385 (6%) Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 G VGG VR++L+ ++ D+D++T LP+RVM + ++ K +PT + +GT+ ++ Sbjct: 3 DGGHAIYFVGGCVRNALLGVADSDVDMSTNALPERVMALAARAGLKAVPTGVEHGTVTVV 62 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 K F++TT R D+ TDGR A V F+ D+LRRDFT+NALYAD QG+VID + GL Sbjct: 63 SGGKGFEVTTFRRDVETDGRRAVVAFSDSILDDALRRDFTMNALYADSQGRVIDPLEGLV 122 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILS 201 DLR R ++FI DA RI EDYLR LR+FRF A Y + + D + L A GL+ LS Sbjct: 123 DLRARRVRFIEDAAQRIREDYLRTLRYFRFCAWYADPIEGFDPEALAAIAAHTDGLESLS 182 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ERI +E+ KLL A +P A+ M G+ I + L V+ EQ+ + +D Sbjct: 183 AERIGAELTKLLTAPDPAPAVAAMRQTGVLGTILPGSDD---RWLGMVVHFEQLLQMSVD 239 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 R L + ++ L + +L + +T + + ++ G Sbjct: 240 WRTRLAAL-------GGEDIDQRLRLSKADAKYLHRLKEAAYGGET-----VAAIAHIDG 287 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 + A + + L +T VL I + +FP+ D++ G + Sbjct: 288 GDMARAVVVLRACL-------SETPPDATVLDRIAQAETAVFPVQAADLMPE--YTGPAL 338 Query: 382 GNILVHCKQEWINSSFQLSQEDLHH 406 G L + WI S F +++ L + Sbjct: 339 GRRLAELRAHWIASGFAATRDSLLN 363 >gi|227893497|ref|ZP_04011302.1| tRNA CCA-pyrophosphorylase [Lactobacillus ultunensis DSM 16047] gi|227864722|gb|EEJ72143.1| tRNA CCA-pyrophosphorylase [Lactobacillus ultunensis DSM 16047] Length = 399 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 97/402 (24%), Positives = 178/402 (44%), Gaps = 22/402 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V ++F K+ I T Sbjct: 14 AMPVLQTLESAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKKLFEKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ + ++ITT R++ D R V F ++ D RRDFTINAL D + Sbjct: 70 IKHGTVTILYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDTR 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL+N I+ +G+ R ED LR++R RF + E ++ + A Sbjct: 130 GEIVDLFDGLKDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEENTEQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK +S ERI E K+ + A + + +++ D L +V Sbjct: 189 NHELLKKISVERIREEFVKMGLGSHSRQAFQIFLDTELSEDV-PDFA--GKKDLLEVYPK 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNFNQKTLS 309 Q +L I+++ I + + + +I F+ + Sbjct: 246 LQFSPTTESNLWALIIILLKVPDDQISKFMRDWKNSNAMTEKVERIIKMFDLIADHAPSD 305 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + G++++I + I L + ++ + K + G Sbjct: 306 YE-----LFEAGEEILINTIDIAHILG----QPISSEALVDRYMALPIKKASELAIDGRF 356 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +++ G+ PG K+G+ L ++ ++S + +QE + L L Sbjct: 357 LIERGMRPGAKLGHTLNRIRELVVSSKIENNQEAIGQYLDNL 398 >gi|315172315|gb|EFU16332.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1346] Length = 406 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 95/408 (23%), Positives = 180/408 (44%), Gaps = 18/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ + ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREIIAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ +S ERI E K+L N + ++ ++E + Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQYC-PKLREQGAGLFRLMD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLS 309 + E + ++ ++ + I S K + L ++ + F Sbjct: 245 LPARQIETEAEAWT-LLIQSLNLPEAEIRSFLKAWKLSNQLIQNVSQLVRGLRFRLSNDW 303 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P + Y G++ + ++ Y +++ + ++ +TG D Sbjct: 304 QPVM---LYELGEESAVLVERLL----YYYQQESQVQVTKELVKALPIHQRHELAITGKD 356 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ PGK +G ++ +Q + S + QE L +K + + Sbjct: 357 LLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSKGE 404 >gi|315038203|ref|YP_004031771.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1112] gi|312276336|gb|ADQ58976.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1112] Length = 399 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 176/399 (44%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T Sbjct: 14 AMPVLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 70 IKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMH 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G ++D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A Sbjct: 130 GDIVDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK +S ERI E K+ A + + +++ + L Q+ ++ Sbjct: 189 NHELLKKISVERIREEFVKMGLGPFSRQAFQIFLDTQLSEDVPDFAGKKDLLQVYPQLKF 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + +++ ++ +S ++ + K + E +I F+ + Sbjct: 249 SPTMETSLWAVIIILLKVSNENIGKFMRDWKNSNAMTEKVEQIIKMFDLIADHVPTDYE- 307 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + G+ ++I + + L + + L+ I + G ++K Sbjct: 308 ----LFEAGEDIIINTIDVADIL---GQPVSSEALVDRYLALPIK-TPSELAVDGRFLIK 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G+ PG ++G L +++ + + S+E + L L Sbjct: 360 RGMRPGAQLGRTLNQIRKKVVACEIENSEEAIEQYLDDL 398 >gi|227889888|ref|ZP_04007693.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii ATCC 33200] gi|227849332|gb|EEJ59418.1| tRNA CCA-pyrophosphorylase [Lactobacillus johnsonii ATCC 33200] Length = 407 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 174/396 (43%), Gaps = 16/396 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +N+ ++ VGG+VRD L+N + D+DIAT+ P + +IF KT + T Sbjct: 22 ALPVLKEINEAGYEAYFVGGSVRDLLLNRHIHDVDIATSAYPMEIKQIFKKT----VDTG 77 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 78 IKHGTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLSEDLKRRDFTINALAMDVD 137 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID+ GL DL I+ +G A +R ED LR++R RF + + ++ + A Sbjct: 138 GNIIDHFDGLGDLEKHLIRAVGKAENRFHEDALRMMRAVRFMSQL-QFTLEPETEQAISD 196 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+ A A + G+ +E+ + L + Sbjct: 197 NHELLSKISVERIRDEFVKMGIALGSQKAFQIFLDTGLSEEVPGFRGKKENLALYPQLNF 256 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + +L+ ++ + + M K + +++FF+ + + Sbjct: 257 SPTNEANLWALMIILLKLPNDKIPHFMRMWKNSNAMERQVADIVAFFDLISSHAPNNYD- 315 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 Y G + +++ + + L + ++ + + G ++K Sbjct: 316 ----LYKAGLETIVSTIDLAHILG----QPINGSALVDSYEALPIKNNRDLVVDGHFLLK 367 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 GIP G +VG +L K+ + ++ + + Sbjct: 368 NGIPAGPRVGLLLEEIKKAVLEGVISNNEAAITEFI 403 >gi|116512356|ref|YP_809572.1| tRNA CCA-pyrophosphorylase [Lactococcus lactis subsp. cremoris SK11] gi|123025314|sp|Q02Y22|CCA_LACLS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116108010|gb|ABJ73150.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactococcus lactis subsp. cremoris SK11] Length = 402 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 98/404 (24%), Positives = 188/404 (46%), Gaps = 24/404 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L +++ ++ VGG+VRD L+ + D+DIAT+ P+ + IF T I Sbjct: 13 AQPVLEKISEHGFEAYFVGGSVRDVLLGREIHDVDIATSAYPEEIKDIFPYT----IDVG 68 Query: 75 ISYGTIKIICRK---KYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 I +GT+ ++ K ++++ITT R++ TD R V F RD + D RRDFT+NA Sbjct: 69 IEHGTVLVLAGKSEAEHYEITTFRTESKYTDYRRPDHVDFVRDLREDLKRRDFTVNAFAC 128 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D +G++ID GL DL+ R + +G A R ED LRI+R RF + + I+ A Sbjct: 129 DFEGQIIDLFDGLTDLKERRLTAVGSALERFNEDALRIMRAMRFASTL-DFKIEEKTFSA 187 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + L+ +S ERI+ E++KLL N + + +K + D Q+++L ++ Sbjct: 188 MRERSHLLEKISVERIFIELDKLLLGSEWRNGLTLLIESEAWKYL-PDFQDLALKKVLTE 246 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + F+ + + S D K L +K+ + E ++ + + Sbjct: 247 LSVDFHFKNSEQAWAALLTRFSNIDVKVFL---RKWKVSNEFSKYVADLVSAYELEN--- 300 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + + +++ +LKI D + + + K + G D Sbjct: 301 WDLVSLYHFGLEKALLVDELKIAFG------RDIDRERAVFINDQLQIHDKSEIVIAGKD 354 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++ ++ + PG ++G IL +++ + + + Q + ++K++ Sbjct: 355 LMDEFSLKPGPELGKILKTIEEKIVKNELKNEQIAILTEVKKML 398 >gi|116494870|ref|YP_806604.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei ATCC 334] gi|191638377|ref|YP_001987543.1| CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus casei BL23] gi|122263712|sp|Q039G0|CCA_LACC3 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|226702068|sp|B3WE84|CCA_LACCB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116105020|gb|ABJ70162.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei ATCC 334] gi|190712679|emb|CAQ66685.1| CCA-adding enzyme (EC 2.7.7.25) (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) [Lactobacillus casei BL23] gi|327382405|gb|AEA53881.1| Poly A polymerase [Lactobacillus casei LC2W] Length = 398 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 100/403 (24%), Positives = 170/403 (42%), Gaps = 24/403 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T Sbjct: 11 KAAIPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRTA----D 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R++ D R V F R D RRDFTINAL Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A Sbjct: 127 HDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 K L +S ER+ +E N+LL + + +F + E +L Q SQ Sbjct: 186 ADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAY-APKMAAHETALTQFSQ 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + + + I L+ Q L M K + E+ + Sbjct: 245 LPDTQ--LTSLASGWAALIFLLRTQP----LVMLKAWKQSNELITLVTQTVKLLQVMPNP 298 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + Y G+ + ++ L D + + + + K LTG Sbjct: 299 TAWD----LYQAGEAAVTTASEVQKLL----TPDFDQQQLAEAYAALPIHSKKELALTGA 350 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 D++K G+ PG +G L +Q + + + L + ++ Sbjct: 351 DLIKAGVRPGPAMGKALNQIEQRVVAGALPNELKKLLPIATEM 393 >gi|327460441|gb|EGF06778.1| polyA polymerase family protein [Streptococcus sanguinis SK1057] Length = 399 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 189/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL+NR ++ +G A R ED LRI+R FRF A + +++ D VA Sbjct: 128 NGQVIDLFQGLDDLKNRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D + + KK+ RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDVQDVKGFLKKWKTSREFAKKVEDLVEITAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQA----QGLPVDFSAIQNLDASLTIHNKQEMAVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ PG K+G IL + ++ + E ++ +++ Sbjct: 358 REFEFEPGPKLGQILKELEYAIVDGHLPNNLEAIYAYIKE 397 >gi|327183480|gb|AEA31927.1| tRNA CCA-pyrophosphorylase [Lactobacillus amylovorus GRL 1118] Length = 399 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 175/399 (43%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T Sbjct: 14 AMPVLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 70 IKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMH 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G ++D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A Sbjct: 130 GDIVDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK +S ERI E K+ A + + +++ + L Q+ ++ Sbjct: 189 NHELLKKISVERIREEFVKMGLGPFSRQAFQIFLDTQLSEDVPDFAGKKDLLQVYPQLKF 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + +++ ++ + ++ + K + E +I F+ + Sbjct: 249 SPTMETSLWAVIIILLKVPNENIGKFMRDWKNSNAMTEKVEQIIKMFDLIADHVPTDYE- 307 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + G+ ++I + + L + + L+ I + G ++K Sbjct: 308 ----LFEAGEDIIINTIDVADIL---GQPVSSEALVDRYLALPIK-TPSELAVDGRFLIK 359 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G+ PG ++G L +++ + + S+E + L L Sbjct: 360 RGMRPGAQLGRTLNQIRKKVVACEIENSEEAIEQYLDDL 398 >gi|325847164|ref|ZP_08169963.1| HDIG domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480944|gb|EGC83990.1| HDIG domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 441 Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 103/431 (23%), Positives = 191/431 (44%), Gaps = 43/431 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I++ L + ++ +VGGAVRD L+ + DID+ T P+ +M IFS K+I + Sbjct: 6 IINRLEEEGFETYLVGGAVRDKLLGKEIHDIDLTTRARPNDIMNIFSD--LKLIDIGKKF 63 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTIK+I + K ++ITT R++ D R+ ++ F+ + D RRDFTINA+ ++G + Sbjct: 64 GTIKVIYKSKEYEITTFRAESSYKDKRHPDEISFSNTIEEDLKRRDFTINAMAI-RKGNL 122 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG DL + I+ +G+ + RI EDYLR LR RF + +I+ + A Sbjct: 123 IDLFGGKKDLERKIIRAVGNPYERIEEDYLRALRAVRFATVL-DFSIEDNLKAAIKNMAG 181 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 ++ +S ERI E++K+L AKNP I + + IF +V+++ + Sbjct: 182 HIEEISKERIRDEVDKILLAKNPSRGIRLLDELNLLAYIFPEVKKMVGFDQHSSHHNLDL 241 Query: 256 FEWKIDSL--------LRFIVLISWQDKKSI-------------------LSMAKKFSLP 288 F+ + L R L K M K+ + Sbjct: 242 FDHTMKVLENCPSNLKTRMAALFHDTGKIDTFFLDENGEGRFFGHQEISEKIMRKRLKVL 301 Query: 289 REIRYFL----ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL--TH 342 + + F+ + N T + ++KL G++ + + A + Sbjct: 302 KYPKKFIEDTSLLVQRHMDNTNTYTKKSVRKLLRKVGEENIYDLFDLQRADVLATVHDNT 361 Query: 343 QDTCFILQVLSDIIH----WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 ++ + L +I++ K+ +G+D++ G G+++G +L ++ Sbjct: 362 ENIFLAKKYLEEILNSDLPRKEDQIDFSGNDLLDLGFEEGRELGMVLKEVYGLVMDEKLV 421 Query: 399 LSQEDLHHLLR 409 + ++ ++ Sbjct: 422 NKKSEIIKYIK 432 >gi|259500651|ref|ZP_05743553.1| poly A polymerase [Lactobacillus iners DSM 13335] gi|259168035|gb|EEW52530.1| poly A polymerase [Lactobacillus iners DSM 13335] Length = 433 Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 191/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 47 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 102 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 103 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 162 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 163 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 221 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 222 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 281 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 282 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 333 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 334 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELV 386 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G +L+ K+ + + + + L Sbjct: 387 IDGNYLLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 430 >gi|295398570|ref|ZP_06808602.1| poly A polymerase [Aerococcus viridans ATCC 11563] gi|294973171|gb|EFG48966.1| poly A polymerase [Aerococcus viridans ATCC 11563] Length = 426 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 94/413 (22%), Positives = 175/413 (42%), Gaps = 23/413 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ LN+ ++ VGGAVRD L++L + D+DIAT+ P V +F + Sbjct: 10 AAPIIHTLNEAGYEAYFVGGAVRDLLLDLPIHDVDIATSAYPAEVQALFPRH----FDVG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GTI + + ++ITT R++ D R KV F ++ + D LRRDFTINAL + Sbjct: 66 LDHGTIMVWFEGETYEITTFRTESTYQDYRRPDKVTFVQNLEEDLLRRDFTINALAMNPD 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K++DY G DL ++ I+ +G+ H R ED LR++R RF + + I + LVA + Sbjct: 126 HKIVDYFHGQKDLADKVIRAVGNPHDRFNEDGLRMMRGVRFASQL-DFQIAPETLVAIAE 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI--FLDVQEISLDQLSQVI 250 L ++ ERI E+NKL N + + + + + D + + D L Sbjct: 185 NAGILVHIAVERIAVEMNKLWIGVNWHKGLDYFLETDLIQYVPYLADYKAVFTDLLDYTS 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMA-------KKFSLPREIRYFLISFFNCNF 303 + Q+ L F K+ + ++ K + + + + ++++ + Sbjct: 245 DQVQIPNENFAWALFFWRAFERNGKEDLAAIQQQVREFTKAWKMSNKAQKDILAYLDILI 304 Query: 304 NQKTLSIPEIKKLFYLYGDKVMI------AKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + + + L+ D++++ A+ + + + Sbjct: 305 YRAQAAEWTLADLYGRDPDQLVLVEGFIEAQQAAGQKSFKAIFNQSKVQTVQDLFDQLPI 364 Query: 358 WKKPLFPLTGDDVVKYGIPPGK-KVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G D+V+ P K +G +L +Q + + L L Sbjct: 365 HSLRDLAINGQDIVQEINPRNKRAIGQMLQFLEQAVVAQDVVNDRAALLAYLD 417 >gi|309808110|ref|ZP_07702026.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus iners LactinV 01V1-a] gi|308168646|gb|EFO70748.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus iners LactinV 01V1-a] Length = 397 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 117/404 (28%), Positives = 191/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 246 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 298 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYESLPLKNESELV 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G ILV K+ + + + + L Sbjct: 351 IDGNYLLKKGIPAGPRIGEILVEIKKAILERKLENNISAIDVFL 394 >gi|312075805|ref|XP_003140580.1| hypothetical protein LOAG_04995 [Loa loa] gi|307764256|gb|EFO23490.1| hypothetical protein LOAG_04995 [Loa loa] Length = 438 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 117/428 (27%), Positives = 197/428 (46%), Gaps = 30/428 (7%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + Q K +LI + L + + + GGAVRD LM + DID AT P+ + Sbjct: 13 IDTPQFKALFTPELIKLNDLFKRNNFQLRMAGGAVRDLLMGIKPSDIDFATNATPEEMKE 72 Query: 62 IFSKTRYKVI-PTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F + +++ +GTI K+ F+ITTLR D++ DGR AK+ FT W+ D+ R Sbjct: 73 LFIREGIRMLNKNGEEHGTITCRIDDKENFEITTLRIDIVCDGRRAKIEFTTSWQLDANR 132 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD T+N+L+ D G V DY GG+ DL R I F+GDA+ RI + + I FF A GE Sbjct: 133 RDLTVNSLFLDLDGTVFDYFGGIKDLEKRRIVFVGDANQRIQD--ITIFPFFGRLALDGE 190 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI-VHMYNGGIFKEI-FLD 237 + L A I GLK +S ERIW+E+ K+ + + + + + + Sbjct: 191 -AHEKATLDAIISNGHGLKDISGERIWTELKKICVGRLGDAVLTTMLKRCNLASLLGLPE 249 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +I + + + + KI+++ L + + K I K+ L + Sbjct: 250 NPDI-----AYFCKLHKRYYQKIEAMTLLSSLFT--EMKHIELFHKRCKLSYAEKTLAEF 302 Query: 298 FFNCNFNQKTLSIPEI---------KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 K + + ++L KV ++ K+ Y + + Sbjct: 303 IVEHRDEAKKNANSNLFFKNMLLNEERLHKFTRKKVQTSREKVIELAKYTMVDDE----- 357 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++S++ WK P+FP+ G D++ +PPG V IL H + WI S + +S+E+L + Sbjct: 358 --LISELNAWKTPVFPVGGIDLMYNNVPPGSHVKQILDHLFKIWIESQWMMSKEELLKHV 415 Query: 409 RKLIASSQ 416 + + + Sbjct: 416 DDIEWNDE 423 >gi|225620332|ref|YP_002721589.1| polyA polymerase [Brachyspira hyodysenteriae WA1] gi|225215151|gb|ACN83885.1| polyA polymerase [Brachyspira hyodysenteriae WA1] Length = 464 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 101/452 (22%), Positives = 186/452 (41%), Gaps = 56/452 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I +L + +VGGAVRDS+M ++ + DI T P+ V RIF T IPT Sbjct: 12 IKEIARILYVEGFQCFLVGGAVRDSIMGITPHEYDITTDARPEDVQRIFKYT----IPTG 67 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ- 131 I +GTI +I + +ITT RSD +DGR+ V + + D RRD TINA+ + Sbjct: 68 IKHGTILVIIEDMHVEITTFRSDGNYSDGRHPDHVEYATSIEEDLPRRDLTINAMAYNIL 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID G+ D++ + +K +G+ + R ED LRI+R RF + +I+ + A Sbjct: 128 DGSLIDMFDGMKDIKKKIVKSVGNPYERFSEDGLRIMRAIRFATKL-DFDIEKETFDAIT 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------IS 242 + L +++ERI E N +L +KNP + + G+ I ++ + Sbjct: 187 HSTGMLASIAAERIREEFNGILLSKNPFRGLELLRKTGVLSLILPELMQGFGVNQNKFHK 246 Query: 243 LDQLSQVIEAEQVFEW----KIDSLLRFIVLISWQDKKSI-------------------- 278 D ++ Q E ++ L+R L K + Sbjct: 247 YDVYYHILHTIQSVEPLETEELTLLVRLAALFHDIAKPMVQKKVSKQDDPVYYNHEVVGA 306 Query: 279 ---LSMAKKFSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 + K+ F+ + Q + +++ G + + L++ Sbjct: 307 NIAKKIMKRLKYSNSEIDFVTLLVRQHMFYYQDEWTDGAVRRFMRAIGVENIRPLLRLRE 366 Query: 334 ALHYNNLTHQDT---------CFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGN 383 A + +D I +++ + + G+D++ ++ + PG +G Sbjct: 367 ADRLGSGNRKDKESKAIPKLLARIDKIIEEENAITVKDLKIDGNDLINEFNLNPGPLIGK 426 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 IL + ++ ++E L + + S+ Sbjct: 427 ILNYLLDLILDEPELNNREFLMEKTKNFLESN 458 >gi|327474160|gb|EGF19570.1| polyA polymerase family protein [Streptococcus sanguinis SK408] Length = 399 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 106/400 (26%), Positives = 188/400 (47%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENRREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G VID GL+DL+NR ++ +G A R ED LRI+R FRF A + +++ D VA Sbjct: 128 NGHVIDLFQGLDDLKNRILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + D++E S +L ++ E Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE-FLPDLKE-SRAKLERLFE 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LDSEFRFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y I L+ L + I + + + K + G ++ Sbjct: 304 --KRDCYDYD----IDLLQQAEELRKAQGLPVNFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ PG K+G IL + ++ E ++ ++ Sbjct: 358 REFSFEPGPKLGQILKELEYAIVDGHLPNDLEAIYAYTKE 397 >gi|227543425|ref|ZP_03973474.1| tRNA adenylyltransferase [Lactobacillus reuteri CF48-3A] gi|300910092|ref|ZP_07127552.1| tRNA adenylyltransferase [Lactobacillus reuteri SD2112] gi|227186577|gb|EEI66648.1| tRNA adenylyltransferase [Lactobacillus reuteri CF48-3A] gi|300892740|gb|EFK86100.1| tRNA adenylyltransferase [Lactobacillus reuteri SD2112] Length = 403 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 171/405 (42%), Gaps = 16/405 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L + + ++ VGG VRD++++ + DIDIAT+ P + IF+ T + Sbjct: 11 EPARPVLQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNHT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R KV F R D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G+VID GL DL+ IK +G+ + R ED LR++R RF + + ID+ L Sbjct: 127 EDGEVIDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKL-DFVIDTATLKGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ ++ ERI E+ KLL +NP+ + G+++ ++ LS ++ Sbjct: 186 KENAPLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQYC-PGLENAQ-AALSALL 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 Q L + L D+K I KK+ ++ + + ++ Sbjct: 244 ILNQWHLENEAQLWSVLSLQLQLDQKEIGKFLKKWKTANDLIAQVKKVVPAVQAIRQRTL 303 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 L + G+ + ++ + + + + + + G + Sbjct: 304 TPT--LMFNTGETALHDANQVAKLYGWA----INDEELQKAYQKLPIKNAKELAIDGRIL 357 Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + K G+ PG +G IL +N L + ++ Sbjct: 358 ITKAGVKPGPLMGKILQQLTLAVVNGEIANDATTLLEKVEEITKE 402 >gi|103487591|ref|YP_617152.1| polynucleotide adenylyltransferase region [Sphingopyxis alaskensis RB2256] gi|98977668|gb|ABF53819.1| Polynucleotide adenylyltransferase region [Sphingopyxis alaskensis RB2256] Length = 398 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 132/399 (33%), Positives = 192/399 (48%), Gaps = 20/399 (5%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + W L I++ L +VGGAVRD+L+ L V D+D+AT ++P V Sbjct: 1 MTRLPDAAWRDRPGLRRIVAALADDGGAVKVVGGAVRDTLLGLDVTDVDLATPLVPGEVT 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 R KVIPT I++GT+ I + +ITTLR D+ TDGR A V F DW+ D+ RR Sbjct: 61 RRLEAAGIKVIPTGIAHGTVTAIASGDHHEITTLRRDVATDGRRATVAFADDWREDAARR 120 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALYAD G + D+ GGL DL + FIGDA RI ED+LRILRF+RF A +G Sbjct: 121 DFTINALYADPRTGAIDDWFGGLADLDRGRVAFIGDAASRIAEDHLRILRFYRFAARFGR 180 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++D A + A++ LK LS ERI E+ K+L +P + M+ GI + ++ Sbjct: 181 GDLDPASHAAVVAARQSLKSLSRERIADELAKILALPDPRAIVAQMHADGILAVLLPELD 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 L ++ E V + + LR + + D +A + L R L + Sbjct: 241 AGFAAALDRLFANEAVAG-AVPAALRRLAALLPADVAIAEQVASRLRLSTRQRKHLAALG 299 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + +++L Y G I + L + L + W+ Sbjct: 300 GHRHD----VARPVRQLAYAIG----IEAARDVHLLAGDPA----------ALRTLSDWQ 341 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 P+ P+ G D+V GI G +V IL + W+ F Sbjct: 342 VPMLPVKGGDIVARGIAAGPEVARILKAVEAAWVAEDFP 380 >gi|72163501|ref|YP_291158.1| metal-dependent phosphohydrolase [Thermobifida fusca YX] gi|71917233|gb|AAZ57135.1| metal-dependent phosphohydrolase [Thermobifida fusca YX] Length = 552 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 100/454 (22%), Positives = 176/454 (38%), Gaps = 59/454 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + + IVGG VRD+L+ V DID+ T +P+RV+ + V Sbjct: 88 DPVVTELGERFAAAGHELAIVGGPVRDALLGRPVHDIDLTTDAVPERVLELVDGWADAVW 147 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ + + +ITT RS+ R +V + D +RRDFT+NA+ Sbjct: 148 TIGIEFGTVGLRKNGRQVEITTYRSESYQVKSRKPEVSYGTSLYEDLVRRDFTVNAMAVR 207 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G+ +D GGL DL +RT++ G +D LRI+R RF A G ++D A Sbjct: 208 VPGGEFVDPFGGLRDLADRTLRTPGKPEDSFNDDPLRIMRGIRFAAQLG-FSVDEKVAAA 266 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---------- 239 + L+I+S+ERI E+ KL+ + NP + M + G+ + ++ Sbjct: 267 MTAMAERLRIVSAERIRDELTKLILSPNPRLGVSLMTDLGVANYVLPEIPKLKLTVDEHH 326 Query: 240 ------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------ 281 E SL L Q ++ E+ + D +LR L+ K + Sbjct: 327 RHKDVYEHSLTVLDQAVDLERARGMEPDLVLRLAALLHDIGKPKTRAFQPGGKVTFHHHE 386 Query: 282 ----------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMI 326 P+++ + + + + + +++ G ++ Sbjct: 387 VVGASMSKNRLTALRFPKDVVNDVSKLVSLHLRFYGYGKGEWTDSAVRRYARDAGH--LL 444 Query: 327 AKLKIF----------LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGI 375 ++L I + D ++ L+ K L G ++ + GI Sbjct: 445 SRLHILTRADCTTRNRRKAAALARAYDDIERRIERLAKEEELSKIRPDLDGHEIQEVLGI 504 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 PG VG + + + +E LLR Sbjct: 505 RPGPLVGQAWRYLLELRLEHGPLGKEEATKALLR 538 >gi|269958436|ref|YP_003328223.1| poly (A) polymerase [Anaplasma centrale str. Israel] gi|269848265|gb|ACZ48909.1| poly (A) polymerase [Anaplasma centrale str. Israel] Length = 425 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 120/394 (30%), Positives = 195/394 (49%), Gaps = 12/394 (3%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + K D ++ I+ ++ +VGG VRDS++ + +DID+AT ++P+ VM Sbjct: 1 MAQTMLSKLLDDPGVVRIVGVIEGARGSVRLVGGCVRDSVLGRNTKDIDLATDLVPESVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K +PT + +GT+ + ++ITTLR D+ DGR+A V FT W D+ RR Sbjct: 61 QALGGAGIKTVPTGVKHGTVTAVVEGIPYEITTLRRDVECDGRHAAVAFTNSWMEDASRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFT NALY D+ GK+ DY G+ DL NRT+ FIG+A RI ED+LRILR FRF A Sbjct: 121 DFTFNALYCDKHGKIYDYFSGIRDLGNRTVAFIGNAEARINEDFLRILRVFRFHASICNT 180 Query: 181 NIDSDGLVASI-KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + S+ +++ K + LS ER+ SE KLL + + + M G+ ++ Sbjct: 181 SPLSEEIISLCGKYAWSIAKLSKERVRSEFFKLLACTHCTSTLEIMERCGVLCQVVP--Y 238 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS-MAKKFSLPREIRYFLISF 298 + + +LS V ++ K+ ++L+ + D ++ + L R+ + L + Sbjct: 239 PVQIGRLSCVHLVDRTPITKLAAMLKGHA---YTDMAGVVEGLEGLLCLSRKEKKLLATL 295 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + L I + +K G V L I L + L+ L+ L + Sbjct: 296 LTTDLPF-PLPIAQQQKYLNDLGADVYRD-LIIVSFLSQDTLS---ENAFLEHLEYTKQF 350 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 + P++G D+ K G GK +G+ L K+ W Sbjct: 351 APLVLPVSGKDLAKLGYKEGKLLGHTLKRLKEAW 384 >gi|222152919|ref|YP_002562096.1| tRNA CCA-pyrophosphorylase [Streptococcus uberis 0140J] gi|254813700|sp|B9DRX9|CCA_STRU0 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|222113732|emb|CAR41700.1| CCA-adding enzyme [Streptococcus uberis 0140J] Length = 403 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 98/402 (24%), Positives = 186/402 (46%), Gaps = 18/402 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + + ++ VGG VRD L++ + D+DIAT+ P+ IFS+T + Sbjct: 13 ALPILKKIKEAGFEAYFVGGGVRDILLDRPIHDVDIATSSYPEETKAIFSRT----VDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R V F R + D RRDFT+NAL D+ Sbjct: 69 IEHGTVLVLENDAEYEITTFRTEDIYVDYRRPSNVSFVRSLEEDLKRRDFTVNALALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GL DL+ + ++ +G A R ED LRI+R FRF A + I+ + A Sbjct: 129 GQVIDKFHGLQDLKRKELRAVGKAEERFQEDALRIMRGFRFAASL-DFKIEDETFEAMKT 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIE 251 L+ +S ER + E++KL A N + + + + L+ ++ L + + Sbjct: 188 HAHLLQKISVERSFIELDKLFMAPNWKLGLTYFIEAQAYNYLPGLENRQSELTGMMDHFD 247 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 A VF+ + I+ +S +K+ L K + + + + +++ + Sbjct: 248 AHFVFDSSEQAWANMIIALSLDKEKAFL---KSWKTSNDFQKQVTQIVTLYRKRESALLS 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y+YG + I + L D +++ D+ + K + G ++ Sbjct: 305 KMD--LYMYGKEAAI----LSENLRKAKGLPTDFNHMMRTYDDLTIYDKHEIVVNGRYLM 358 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 K + G ++G++L ++ + + D+ + K + Sbjct: 359 EKLNMKAGPQLGHLLKKVEKAIVEGTLANKVGDIEAFIMKEL 400 >gi|114762223|ref|ZP_01441691.1| polyA polymerase family protein [Pelagibaca bermudensis HTCC2601] gi|114545247|gb|EAU48250.1| polyA polymerase family protein [Roseovarius sp. HTCC2601] Length = 363 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 117/388 (30%), Positives = 183/388 (47%), Gaps = 27/388 (6%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +L + + VGG VR++L V D+DIAT PD V+ + K +PT I +GT+ Sbjct: 1 MLEQAGHAAYAVGGCVRNALFGAPVADVDIATDARPDTVVALAVAAGLKPVPTGIDHGTV 60 Query: 81 KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 ++ ++TT R+D+ TDGR A V ++ D D+ RRDFT+NALYAD +G+V+D + Sbjct: 61 TVVAEGIGHEVTTFRADVETDGRRAVVRYSDDIAEDAARRDFTMNALYADARGEVLDPLN 120 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLK 198 GL DL R ++FI DA RI EDYLRILRFFRF A YG + +D + L GL Sbjct: 121 GLPDLEARRVRFIRDAGERIREDYLRILRFFRFHAWYGDPDAGVDEEALAGIATNLDGLA 180 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS+ER+ EI +LL A +P ++ M G+ + L L + EQ Sbjct: 181 ALSAERVGHEITRLLSASDPAPSVAVMEQVGVLARVLPGATSRMLAPL---VALEQSAAL 237 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 D + R VL + A+ L + + L ++ + + ++ Y Sbjct: 238 PPDPMRRLAVLGYFD--------ARSLRLSKARQRHLEAYQSLISAGTGYT-----EIAY 284 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 +G+ + + A + + + I P+ D++ G Sbjct: 285 RHGEAMARDVAALRSASLGQPMPE-------DLEAQIATGAGATLPIRPRDLMPEF--EG 335 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHH 406 +G+ L ++ WI S F L++ DL Sbjct: 336 PALGDELRARERRWIESGFTLTKADLLK 363 >gi|94967528|ref|YP_589576.1| metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] gi|94549578|gb|ABF39502.1| metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 94/457 (20%), Positives = 177/457 (38%), Gaps = 72/457 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + I I+ L ++ +VGG VRD L+ D D+AT +PD+VM+IF KT Sbjct: 5 AAAIEIVKTLRGHGHQAYLVGGCVRDLLLGRDPADYDVATDAIPDQVMKIFPKT----WA 60 Query: 73 TSISYGTIKIICRKKY----------------FDITTLRSD-LITDGRYA-KVVFTRDWK 114 +G + + + ++ T RSD + +DGR+ +V F++D + Sbjct: 61 VGAQFGVVLVPVPDEPECDPEATHPQSHHHGCIEVATFRSDGVYSDGRHPDEVRFSQDPR 120 Query: 115 ADSLRRDFTINALYADQ--QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D RRDFTIN + D +V+D+VGG DL + I+ IGD R ED LR+LR R Sbjct: 121 EDVQRRDFTINGMLLDPLNHDEVLDFVGGRADLAAKIIRTIGDPRQRFEEDKLRMLRAVR 180 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A + E I + + + + ++S ER+ E+ K+L + A + G+ Sbjct: 181 FAARF-EYEIAPETMAVIQQLSPQISVVSHERVRDELTKMLTEGHARRAFELLDESGLLI 239 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK--------- 283 ++ ++ ++ + ++ F + D + ++L+ ++A Sbjct: 240 QVLPEIAKM------KGVQQPPQFHPEGDVWIHTLMLLEQLPPNCSPTLAWGALLHDVGK 293 Query: 284 -----------KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332 +F ++ + + ++ L + + ++ Sbjct: 294 PPTFRRAPDRIRFDGHVDVGVRMTEVLGKQMRFSNEQLDQVSALVENHMKFAEVTHMRES 353 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWK--------------------KPLFPLTGDDVVK 372 + L D L + + + +P +TG D++ Sbjct: 354 TLKRFMRLPKFDEHMELHKMDCLASHRNLGSYDFLKQKMEETQPKEIRPEPLVTGADLIA 413 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G PG IL + + Q S+E ++ Sbjct: 414 LGHRPGPLFKEILSSVEDGQLEGRLQ-SREQAMAFVQ 449 >gi|291531026|emb|CBK96611.1| uncharacterized domain HDIG [Eubacterium siraeum 70/3] Length = 438 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 103/434 (23%), Positives = 179/434 (41%), Gaps = 49/434 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L LN ++ VGG VRD L+ +D D+ T+ LP++++ +F Y+++ + Sbjct: 9 EVLQKLNNNGYEAYCVGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFD--GYRLLTVGLK 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ +I K +ITT R D D R+ KV FT + D RRD TINA+ + + Sbjct: 67 HGTVTVIINKHPVEITTYRIDGEYIDHRHPSKVGFTPNLADDLARRDLTINAIAYNDKVG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG DL+N I+ +GD R +D LRILR RF + YG +ID + A + K Sbjct: 127 MVDLYGGAEDLKNGIIRCVGDPMKRFDDDGLRILRALRFASRYG-FSIDKETSDAIHRQK 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG-GIFKEIFLDV-QEISLDQLSQVIE- 251 L +S+ERI SE+ +L + N + EI ++ I +Q S+ + Sbjct: 186 FLLSFISAERINSELCGILTGD----CYDILRNYSDVICEIIPEMYPCIGFEQHSKYHDK 241 Query: 252 ------AEQVFEWKIDSLLRFIVLISWQDKKS---------------------ILSMAKK 284 A V + R +L+ K + ++ Sbjct: 242 TVYGHIAATVAAAEPTVEARLTMLLHDIGKPDSFFMKDGAGHFYGHADVSCKIAEKILER 301 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN----- 339 +I+ ++ + I I++ YG + I +K+ Sbjct: 302 LRFSNKIKDEVLFLIENHGIVINDDIRSIRRGVARYGAERFIKLIKVHYYDTCGKSPAYF 361 Query: 340 ----LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 L + L + + G D+ K G GK++G L ++ +N Sbjct: 362 GEKALFDSIEKHTREFLQNEPPMSLKQLKVNGSDISKLGFT-GKEIGQALNFLLEQVVNG 420 Query: 396 SFQLSQEDLHHLLR 409 + + ++ L L+ Sbjct: 421 NCENDKDSLLALIE 434 >gi|319938896|ref|ZP_08013260.1| CCA-adding enzyme [Streptococcus anginosus 1_2_62CV] gi|319811946|gb|EFW08212.1| CCA-adding enzyme [Streptococcus anginosus 1_2_62CV] Length = 399 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 178/400 (44%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+N + D+DIA++ P+ RIF +T I Sbjct: 12 EALPVLKKIKNAGFEAYFVGGSVRDALLNRPIHDVDIASSSYPEETKRIFERT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R++ + D R V F R K D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLEDNHEYEVTTFRTEDIYVDYRRPSHVTFVRSLKEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 VID GL DL N+ ++ +G R ED LRI+R FRF A G ++D+D A Sbjct: 128 ARNVIDLFEGLADLENQILRAVGIPSERFNEDALRIMRGFRFQAALG-FDLDTDTFQAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ER + E +KLL A + + G + D++ S QL + + Sbjct: 187 LCAPLLEKISVERTFIEFDKLLTASYWRKGLKSLLASGATDYL-PDMRS-SQSQLKTMFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F++ S + L+ K++ K + E + + ++ + Sbjct: 245 IKADFQFT-SSEQAWAALLMALQVKNVKKFLKHWKTSNEFQKRVEQIVTIYNIRQRHFLD 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y + +MI +I A D I + K + G ++ Sbjct: 304 --KEECYRFELDLMIQAEEIRQAQGLAV----DFEKIHSTYDSLTIHDKHEIVVNGGLLI 357 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 K +G P +G +L + +N + E + + + Sbjct: 358 KEFGFKPSPALGQLLTEIETAIVNGTLDNRLEAILAFVEE 397 >gi|301066431|ref|YP_003788454.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei str. Zhang] gi|300438838|gb|ADK18604.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus casei str. Zhang] Length = 398 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 100/403 (24%), Positives = 170/403 (42%), Gaps = 24/403 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T Sbjct: 11 KAAIPILKKIEVAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRTA----D 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R++ D R V F R D RRDFTINAL Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A Sbjct: 127 HDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 K L +S ER+ +E N+LL + + +F + E +L Q SQ Sbjct: 186 ADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAY-APKMAAHETALTQFSQ 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + + + I L+ Q L M K + E+ + Sbjct: 245 LPDTQ--LTSLASGWAALIFLLRTQP----LVMLKAWKQSNELITLVTQTVKLLQVMPNP 298 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + Y G+ + ++ L D + + + + K LTG Sbjct: 299 TAWD----LYQAGEAAVTTASEVQKLL----TPDFDQQQLAEAYAALPIHSKKELALTGA 350 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 D++K G+ PG +G L +Q + + + L + ++ Sbjct: 351 DLIKAGVRPGPAMGKALNQIEQRVVAGALPNELKKLLPIATEM 393 >gi|308069476|ref|YP_003871081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681] gi|305858755|gb|ADM70543.1| tRNA nucleotidyltransferase (tRNA adenylyltransferase) [Paenibacillus polymyxa E681] Length = 440 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 89/432 (20%), Positives = 181/432 (41%), Gaps = 45/432 (10%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++ L ++ VGG VRD L+ ++ D+D+ T+ P++V+ +F VIPT I Sbjct: 19 EVIHTLTAAGHEAYWVGGCVRDELLGRAIHDMDLTTSAEPEQVIALFP----HVIPTGIQ 74 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ F++TT R++ D R +V F +D + D +RRDFT+NA+ + G+ Sbjct: 75 HGTVTVMQGGHAFEVTTFRTESGYADHRRPTEVAFVKDIREDLMRRDFTMNAIAMAEHGE 134 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GG DLR ++ +G A R ED LR+LR RF + + + + I+ + Sbjct: 135 RVDPFGGEADLRAALVRCVGRAEERFEEDGLRMLRCIRFASVF-RFRVAYNTWKGMIRRR 193 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF--KEIFLDVQEISLDQLSQVIEA 252 +GL+ ++ ER+ E+ K+L +PL + + G+ ++ + ++ + L +++ Sbjct: 194 EGLRYIAMERVRVELEKMLVGPDPLRGLEMLSRSGLLGCTKVPVPWEQCEVGALKGIVQL 253 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---------- 302 ++ W +++ ++ + + ++ +R L+ Sbjct: 254 QEELRWG------LLLMSCRLTSEAADELLRAWTFSNAVRLRLVHLLEWETELIYSAGAI 307 Query: 303 ----------FNQKTLSIPEIKKLFYLYGDKVMIAKLKIF--LALHYNNLTHQDTCFILQ 350 +L G L ++ L + L + + + Sbjct: 308 AGDSVPGESDIVNDEALRRSWIRLLIRLGKDTASDWLDLYKTLPASFRGLPPRVEKHVAK 367 Query: 351 VLSDIIHWKKP-------LFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 W K +TG+++V P G +G I+ Q E Sbjct: 368 TAELASSWTKQAVVVRIKDLNITGNELVQAMNRPGGPWLGQIMEQLLQAVACGDIPNETE 427 Query: 403 DLHHLLRKLIAS 414 L +++++S Sbjct: 428 TLLQEAKRVMSS 439 >gi|291557511|emb|CBL34628.1| uncharacterized domain HDIG [Eubacterium siraeum V10Sc8a] Length = 438 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 108/437 (24%), Positives = 183/437 (41%), Gaps = 55/437 (12%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L LN ++ VGG VRD L+ +D D+ T+ LP++++ +F Y+++ + Sbjct: 9 EVLQKLNNNGYEAYCVGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFD--GYRLLKVGLK 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ +I K +ITT R D TD R+ KV FT + D RRD TINA+ + + Sbjct: 67 HGTVTVIINKHPVEITTYRIDGEYTDHRHPSKVGFTPNLADDLARRDLTINAIAYNDKVG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG DL+N I+ +GD R ED LRILR RF + YG +ID + A + K Sbjct: 127 MVDLYGGAEDLKNGIIRCVGDPMKRFDEDGLRILRALRFASRYG-FSIDKETSDAIHRQK 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG-GIFKEIFLDV-QEISLDQLSQVIE- 251 L +S+ERI SE+ +L + N + EI ++ I +Q S+ + Sbjct: 186 FLLSFISAERINSELCGILTGD----CYDILRNYSDVICEIIPEMYPCIGFEQHSKYHDK 241 Query: 252 ------AEQVFEWKIDSLLRFIVLISWQDKKS---------------------ILSMAKK 284 A V + R +L+ K + + Sbjct: 242 TVYGHIAATVAAAEPTVEARLTMLLHDIGKPDSFFMKDGAGHFYGHADVSCKIAEKILVR 301 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 +I+ ++ + I I++ YG + LK+ +Y+ Sbjct: 302 LRFSNKIKDEVLFLIENHGIVINDDIRSIRRGVARYGAERF---LKLIKVHYYDTCGKSP 358 Query: 345 TCFILQVLSDIIHWKKPLF------------PLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 F + L D I F + G D+ + G GK++G L ++ Sbjct: 359 AYFGEKALFDSIEKHTREFLQNEPPISLKQLKVNGSDISRLGFT-GKEIGKALNFLLEQV 417 Query: 393 INSSFQLSQEDLHHLLR 409 +N + + ++ L L+ Sbjct: 418 VNGNCENDKDSLLALIE 434 >gi|315653514|ref|ZP_07906435.1| poly A polymerase [Lactobacillus iners ATCC 55195] gi|315489205|gb|EFU78846.1| poly A polymerase [Lactobacillus iners ATCC 55195] Length = 458 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 191/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 72 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 127 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 128 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 187 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 188 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 246 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 247 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 306 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 307 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 358 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 359 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYESLPLKNESELV 411 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G +L+ K+ + + + + L Sbjct: 412 IDGNYLLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 455 >gi|312875453|ref|ZP_07735456.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2053A-b] gi|311088964|gb|EFQ47405.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2053A-b] Length = 397 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 116/404 (28%), Positives = 190/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 127 ADGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 246 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 298 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELV 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G +LV K+ + + + + L Sbjct: 351 IDGNYLLKKGIPAGPRIGELLVEIKKAILERKLENNISAIDVFL 394 >gi|309806747|ref|ZP_07700741.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus iners LactinV 03V1-b] gi|308166862|gb|EFO69047.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus iners LactinV 03V1-b] Length = 397 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 191/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FGLDLDTKKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 246 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 298 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELV 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G +L+ K+ + + + + L Sbjct: 351 IDGNYLLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 394 >gi|24379353|ref|NP_721308.1| tRNA CCA-pyrophosphorylase [Streptococcus mutans UA159] gi|73619869|sp|Q8DUL8|CCA_STRMU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|24377279|gb|AAN58614.1|AE014931_7 putative poly(A) polymerase [Streptococcus mutans UA159] Length = 401 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 88/402 (21%), Positives = 177/402 (44%), Gaps = 16/402 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD L+ + D+DIA++ P+ +IF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDVLLGHPIHDVDIASSSYPEETKKIFPRT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R++ + R ++V F R + D RRDFTINA D+ Sbjct: 68 GIEHGTVLVLENGHDYEVTTFRTEDLYVDYRRPSQVSFVRSLEEDLKRRDFTINAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +ID GL DL + ++ +G+A R ED LRI+R RF A +I+ +A Sbjct: 128 KANIIDKFNGLVDLEQKILRAVGNAAERFNEDALRIMRGLRFAAQLN-FDIEKKTFIAMR 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L+ +S ER + E +KLL A I + + + +Q + + + Sbjct: 187 EHAPLLEKISVERSFIEFDKLLRAPYWRKGINCLIASQAYDYL-PLLQSTADKWQQLLTD 245 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F + S + ++ + + ++ S K + + + + ++ I Sbjct: 246 LPEDFTFST-SEQAWAAVLLYLNVENPRSFLKSWKTSNDFQKTVEKLLAIYRLREDRQIK 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + Y ++ +L+ L D I ++ + K + G D++ Sbjct: 305 KTDVYQYSATLLTLVEELRQAQGLAV------DFEHIKELDEALTIHDKHEIVVKGGDLM 358 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + + PG +G IL + + + ++ + +RK I Sbjct: 359 AAFDLKPGPDLGKILNQIESFIVAGNLANERQAILDFVRKEI 400 >gi|325689780|gb|EGD31784.1| polyA polymerase family protein [Streptococcus sanguinis SK115] gi|325696420|gb|EGD38310.1| polyA polymerase family protein [Streptococcus sanguinis SK160] Length = 399 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 105/400 (26%), Positives = 187/400 (46%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ IF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDALLKRPIHDVDIASSSYPEETKHIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GL+DL N+ ++ +G A R ED LRI+R FRF A + +++ D VA Sbjct: 128 NGQVIDLFQGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFVAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + D++E S +L ++ E Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE-FLPDLKE-SRAKLERLFE 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LDSEFRFSA-SEQAWAALLLALDVQNVKGFLKKWKTSREFAKKVEDLVGIADIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y I L+ L D I + + + K + G ++ Sbjct: 304 --KRDCYDYD----IDLLQQAEELRQAQGLAVDFSAIKSLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ PG K+G IL + ++ E ++ +++ Sbjct: 358 QEFDFEPGPKLGQILKELEYAIVDGRLPNDLEAVYAYIKE 397 >gi|325978493|ref|YP_004288209.1| tRNA CCA-pyrophosphorylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178421|emb|CBZ48465.1| tRNA CCA-pyrophosphorylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 401 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 179/400 (44%), Gaps = 16/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + IL + + ++ VGG+VRD L+N + D+DIAT+ P+ IF ++ + Sbjct: 12 EALPILKKIREAGYEAYFVGGSVRDVLLNRPIHDVDIATSSYPEETKGIF----HRTVDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ITT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 68 GIEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL DL + ++ +G+ R ED LRI+R FRF A + +I+ D A Sbjct: 128 TGLIIDKFNGLADLEAKLLRAVGNPAERFNEDALRIMRGFRFAASL-DFDIEPDTFAAMA 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVI 250 L+ +S ER + E +KLL A I M K + +L+ +L QL + Sbjct: 187 AHAPLLEKISVERSFIEFDKLLMAPFWRKGIKAMITSQAQKYLPYLENAHDNLQQLLDDL 246 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + F+ + ++ + +D + L K S ++ +++ + + L Sbjct: 247 ACDYHFKTSEQAWAALLLALDVKDVRVFLKAWKTSSQFQKDVEKIVAIYRFRL-ENELDK 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E+ + ++ + L + + + D IH K + G + Sbjct: 306 MEMYRYGSCLIEQAEDLRAGFGLPVDFERIERLDKELT-------IHDKHEIVVNGGVLI 358 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + PG ++G +L +++ + +E + +RK Sbjct: 359 KELQYKPGPELGQVLKEIEEKIVLGELANDKEAIFDFIRK 398 >gi|229010946|ref|ZP_04168142.1| CCA-adding enzyme [Bacillus mycoides DSM 2048] gi|229166483|ref|ZP_04294239.1| CCA-adding enzyme [Bacillus cereus AH621] gi|228617057|gb|EEK74126.1| CCA-adding enzyme [Bacillus cereus AH621] gi|228750346|gb|EEM00176.1| CCA-adding enzyme [Bacillus mycoides DSM 2048] Length = 385 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 89/393 (22%), Positives = 178/393 (45%), Gaps = 15/393 (3%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56 Query: 81 KIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++G+++D Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G +R + I +GDA R ED LR++R RF + G +++ A L+ Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLG-FSLEIKTKQAIETYGHLLE 175 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 ++ ERI E KLL +N + + +F + +Q L FE Sbjct: 176 HIAIERITVEFEKLLTGTYCVNGLQELVETKLFSHL-PYLQMSEERLLKATQYKWDSFET 234 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +++ F+ I + L +++ + +++ ++K I L Y Sbjct: 235 DVEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLAIRSRKEKEWDTI--LLY 289 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPP 377 G ++ +++ A+ + + + + + +TG+D++ + P Sbjct: 290 KTGIRIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVTGNDLLSWTDKKP 348 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G V +L + ++ + +ED+ L++ Sbjct: 349 GPWVAEMLQNIEEAIVQGDLVNKKEDIREWLQR 381 >gi|317495207|ref|ZP_07953577.1| poly A polymerase head domain-containing protein [Gemella moribillum M424] gi|316914629|gb|EFV36105.1| poly A polymerase head domain-containing protein [Gemella moribillum M424] Length = 382 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 103/415 (24%), Positives = 188/415 (45%), Gaps = 38/415 (9%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +I + K+ I+IL ++ K ++ VGG VRD L+++ DID+ T LP++V Sbjct: 1 MQNIFEQKF---GKAIDILKIIEKNGYEAYFVGGCVRDYLLDVDFSDIDVTTNALPEQVK 57 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSL 118 IF K I T + +GT+ +I + + ++ITT R++ ++ R KV F R+ K D Sbjct: 58 EIF----GKTIDTGLQHGTVTVIFKGEAYEITTFRTESDYSNHRAPDKVEFVRNLKEDLD 113 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFTINA+ D +G + D+ G+ DL+N I+ + + R ED LR+LR FRF + Sbjct: 114 RRDFTINAMAMDSRGVIYDFHNGVTDLKNGVIRTVNNPSERFYEDSLRMLRAFRFSSKLN 173 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I+ A K K ++ +S ERI SE KLL N++ + + I K I Sbjct: 174 -FEIEESTFFAIKKNAKLIEFVSVERIVSEFKKLLVGVGCKNSLEKLISSEIHKYI---- 228 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 + I+ Q + L ++ + D + KK L + Sbjct: 229 ------PFLKYIKTYQDLSPYTFTQSLYYLSYFNNIDSVEL----KKLKLSNIEIKQIKK 278 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + N + + + E+ + Y + + + ++F + T +I + + Sbjct: 279 YENIKYALDSNTPLEL--ILYKHEKEDVQFVSELF--------KYYTTEYIANI--RLKI 326 Query: 358 WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +T +++ + PG + +I+ ++ + + +E++ L K+ Sbjct: 327 HSFYDVEITSKEIIDTINLKPGPWIKDIISQIEKNILLNKLNNRKEEIIDFLLKI 381 >gi|302191340|ref|ZP_07267594.1| tRNA CCA-pyrophosphorylase [Lactobacillus iners AB-1] gi|309809261|ref|ZP_07703130.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 2503V10-D] gi|325911998|ref|ZP_08174400.1| tRNA adenylyltransferase [Lactobacillus iners UPII 143-D] gi|308170374|gb|EFO72398.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 2503V10-D] gi|325476183|gb|EGC79347.1| tRNA adenylyltransferase [Lactobacillus iners UPII 143-D] Length = 397 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 191/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 246 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 298 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELV 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G +L+ K+ + + + + L Sbjct: 351 IDGNYLLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 394 >gi|182419878|ref|ZP_02951116.1| cca-adding enzyme [Clostridium butyricum 5521] gi|237668756|ref|ZP_04528740.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376247|gb|EDT73831.1| cca-adding enzyme [Clostridium butyricum 5521] gi|237657104|gb|EEP54660.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 438 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 117/440 (26%), Positives = 199/440 (45%), Gaps = 48/440 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 SD+ I+++L + + +VGG VRD L+N D DI T P+ V R+F KVI Sbjct: 9 SDVQYIINVLIENGYEGYMVGGCVRDLLINREPNDYDITTNAKPEVVARLFD----KVIL 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ K +++TT R D D R+ + V F D K D RRDFTINA+ + Sbjct: 65 TGLKHGTVTVVINKVQYEVTTYREDGEYKDSRHPENVKFVTDIKNDLSRRDFTINAMAYN 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ +IDY GL+DL+N+ I+ +G+ R ED LR+LR RF + I+ + + Sbjct: 125 KEKGLIDYFDGLSDLKNKVIRTVGNPEKRFTEDSLRMLRAVRFAVQL-DFKIEESIIQSI 183 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K L+ +S ERI E NK++ KNP N + ++ I K + D+ + ++ I Sbjct: 184 KILNKNLEFISKERIREEFNKIIL-KNP-NGLKLLHECSILKYVADDLDKAYDYYINDKI 241 Query: 251 EAEQVFEW--------KIDSLLRFIVLISWQDKKS-------------------ILSMAK 283 ++E K D LR +L K + + Sbjct: 242 NCYNLYEHLILSSCNIKKDLSLRLTMLFHDLGKLKDWNNKLEKVDNIFIESACIAEKILR 301 Query: 284 KFSLPR---EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNN 339 + LI++ + + K IKKL + ++ +K+ A + N Sbjct: 302 SLKYDNGTIKKVKTLITYMHSDLEDKV----SIKKLLNIIDVELFEDLIKVKKAHIMSEN 357 Query: 340 LTHQDTCFILQVLSDII----HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + I ++ DII ++ + G+D++K G+ GK VG +L + + I Sbjct: 358 IEEVKFLNIEKLYCDIIEKNECFRIRDMRINGEDIIKIGVKKGKDVGIMLNYLLCKVIED 417 Query: 396 SFQLSQEDLHHLLRKLIASS 415 + ++ L L ++ S Sbjct: 418 NNLNYKKKLLELAEDKLSMS 437 >gi|309805741|ref|ZP_07699781.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 09V1-c] gi|308164994|gb|EFO67237.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 09V1-c] Length = 397 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 116/404 (28%), Positives = 191/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 246 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 298 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELV 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G +LV K+ + + + + L Sbjct: 351 IDGNYLLKQGIPAGPRIGELLVEIKKAILERKLENNISAIDVFL 394 >gi|300812579|ref|ZP_07092996.1| putative tRNA adenylyltransferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496452|gb|EFK31557.1| putative tRNA adenylyltransferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 396 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 104/398 (26%), Positives = 174/398 (43%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T Sbjct: 13 AMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ D R KV F ++ D RRDFTINAL ++Q Sbjct: 69 IQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQ 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 129 GEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQL-SFSLEEKTRQAIID 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E KL KN A G+ +E DQLS + Sbjct: 188 NHELLSKISVERIREEFVKLALGKNSRQAFKDFLATGLSEEC--PGLAGKKDQLSVFTDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + VLI+ K + K + + +++ F+ + Sbjct: 246 KAGPDDEAVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGEESDF 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + G + + A LK+ L + +L + + + G + Sbjct: 306 D-----LFEIGQENLEAALKLAGLLG----QPLSSQILLDRYNRLPIKAAGELAIDGQWL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K GI P ++G +L + ++ + SQ + L Sbjct: 357 IKQGIKPSPELGQLLRKALEGVVSGQVENSQAAIAEFL 394 >gi|312872366|ref|ZP_07732436.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2062A-h1] gi|312874002|ref|ZP_07734038.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2052A-d] gi|329921299|ref|ZP_08277737.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 1401G] gi|311090551|gb|EFQ48959.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2052A-d] gi|311092189|gb|EFQ50563.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 2062A-h1] gi|328934591|gb|EGG31095.1| tRNA adenylyltransferase [Lactobacillus iners SPIN 1401G] Length = 397 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 116/404 (28%), Positives = 191/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 246 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 298 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELV 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G +LV K+ + + + + L Sbjct: 351 IDGNYLLKKGIPAGPRIGELLVEIKKAILERKLENNISAIDVFL 394 >gi|229058273|ref|ZP_04196660.1| CCA-adding enzyme [Bacillus cereus AH603] gi|228720044|gb|EEL71630.1| CCA-adding enzyme [Bacillus cereus AH603] Length = 385 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 89/393 (22%), Positives = 178/393 (45%), Gaps = 15/393 (3%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56 Query: 81 KIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++G+++D Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G +R + I +GDA R ED LR++R RF + G +++ A L+ Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLG-FSLEIKTKQAIETYGHLLE 175 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 ++ ERI E KLL +N + + +F + +Q L FE Sbjct: 176 HIAIERITVEFEKLLTGTYCVNGLQELVETKLFSHL-PYLQMSEERLLKATQYKWDSFET 234 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +++ F+ I + L +++ + +++ ++K I L Y Sbjct: 235 DVEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLAIRSRKEKEWDTI--LLY 289 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG-IPP 377 G ++ +++ A+ + + + + + +TG+D++ + P Sbjct: 290 KTGIRIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVTGNDLLSWADKKP 348 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G V +L + ++ + +ED+ L++ Sbjct: 349 GPWVAEMLQNIEEAIVQGDLVNKKEDIREWLQR 381 >gi|229132445|ref|ZP_04261299.1| CCA-adding enzyme [Bacillus cereus BDRD-ST196] gi|228651151|gb|EEL07132.1| CCA-adding enzyme [Bacillus cereus BDRD-ST196] Length = 385 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 89/393 (22%), Positives = 179/393 (45%), Gaps = 15/393 (3%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +L + ++ VGG+VRD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ Sbjct: 1 MLKQHGHEAYFVGGSVRDLIIDRPIGDIDIATSALPEEVMAIFPRH----VPVGLEHGTV 56 Query: 81 KIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ D R V F R + D RRDFT+NA+ ++G+++D Sbjct: 57 IVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDL 116 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 G +R + I +GDA R ED LR++R RF + G +++ A L+ Sbjct: 117 FAGKEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTLG-FSLEIKTKQAIETYGHLLE 175 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 ++ ERI E KLL + +N + + +F + +Q L FE Sbjct: 176 HIAIERITVEFEKLLTGTSCVNGLQELVETKLFSHL-PYLQMSEERLLKATQYKWDSFET 234 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +++ F+ I + L +++ + +++ ++K I L Y Sbjct: 235 DVEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLAIRSRKEKEWDTI--LLY 289 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPP 377 G ++ +++ A+ + + + + + +TG+D++ + P Sbjct: 290 KTGIRIAEMAERVYEAI-IESYNSASVKQVQSLFHALPIKNRQEMNVTGNDLLSWTDKKP 348 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G V +L + ++ + +ED+ L++ Sbjct: 349 GPWVAEMLQNIEEAIVQGDLVNKKEDIREWLQR 381 >gi|225017536|ref|ZP_03706728.1| hypothetical protein CLOSTMETH_01463 [Clostridium methylpentosum DSM 5476] gi|224949686|gb|EEG30895.1| hypothetical protein CLOSTMETH_01463 [Clostridium methylpentosum DSM 5476] Length = 449 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 101/442 (22%), Positives = 179/442 (40%), Gaps = 53/442 (11%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 LS L ++ IVGG VRD L+ D DI T+ LP MR F Y +I T + +G Sbjct: 13 LSKLRACGYEAYIVGGCVRDLLLGWEPDDYDITTSALPFETMRCF--AGYHIIETGVKHG 70 Query: 79 TIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVI 136 T+ + +ITT R D +D R V FTR + D RRDFTINA+ + Sbjct: 71 TVTAVIDGMPLEITTYRIDGQYSDNRRPDSVTFTRSLREDLARRDFTINAMAYSPSNGLQ 130 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 DY GG DL+++ I+ +GD R ED LRILR RF + G ++ A + + Sbjct: 131 DYFGGQQDLKDQMIRCVGDPQTRFEEDALRILRAVRFSSVLG-FGMEPTTAAALLTRRGL 189 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L ++ ER+ E+NKLL ++ + + E+ ++ + V+ Sbjct: 190 LVHIARERVQVELNKLLLGRDVGRVLR--EYTEVLCEVIPEIIPCIGFEQHSRYHLYDVW 247 Query: 257 EWKIDSL--------LRFIVLISWQDK---------------------KSILSMAKKFSL 287 E + ++ +R +L+ K + K+ Sbjct: 248 EHTVHTVERSPERLTVRLAMLLHDLAKPLTFSIEGGTGHFYSHQQKSADLAQEILKRLRY 307 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 EI +++ + + S IK+ K+ +L+ L + ++L +D F Sbjct: 308 SGEITRRVVNLIRYHSVEFHGSAKAIKRWL----GKLGEEELRELLLVQRSDLLGKDPSF 363 Query: 348 ILQV-------------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 ++ ++ + + G+D+ + G G+ +G +L + I+ Sbjct: 364 WYELEELDENEQRINEIIAQNQCFTVAQLAVNGNDLREVGCTQGRLIGQLLEYLLGLVID 423 Query: 395 SSFQLSQEDLHHLLRKLIASSQ 416 ++E L + + + + Sbjct: 424 EECPNNREALLSRANQYLVNRK 445 >gi|290580645|ref|YP_003485037.1| putative poly(A) polymerase [Streptococcus mutans NN2025] gi|254997544|dbj|BAH88145.1| putative poly(A) polymerase [Streptococcus mutans NN2025] Length = 401 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 88/402 (21%), Positives = 177/402 (44%), Gaps = 16/402 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD L+ + D+DIA++ P+ +IF +T + Sbjct: 12 EALPVLEKIKAAGFEAYFVGGSVRDVLLGHPIHDVDIASSSYPEETKKIFPRT----VDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ +++TT R++ + R ++V F R + D RRDFTINA D+ Sbjct: 68 GIEHGTVLVLENGHDYEVTTFRTEDLYVDYRRPSQVSFVRSLEEDLKRRDFTINAFALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +ID GL DL + ++ +G+A R ED LRI+R RF A +I+ +A Sbjct: 128 KANIIDKFNGLVDLEQKILRAVGNAAERFNEDALRIMRGLRFAAQLN-FDIEKKTFIAMR 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L+ +S ER + E +KLL A I + + + +Q + + + Sbjct: 187 EHAPLLEKISVERSFIEFDKLLRAPYWRKGINCLIASQAYDYL-PLLQSTADKWQQLLTD 245 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F + S + ++ + + ++ S K + + + + ++ I Sbjct: 246 LPEDFTFST-SEQAWAAVLLYLNIENPRSFLKSWKTSNDFQKTVEKLLAIYRLREDRQIK 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + Y ++ +L+ L D I ++ + K + G D++ Sbjct: 305 KTDVYQYSATLLTLVEELRQAQGLAV------DFEHIKELDEALTIHDKHEIVVKGGDLM 358 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + + PG +G IL + + + ++ + +RK I Sbjct: 359 AAFDLKPGPDLGKILNQIESFIVAGNLANERQAILDFVRKEI 400 >gi|300870433|ref|YP_003785304.1| polyA polymerase family protein [Brachyspira pilosicoli 95/1000] gi|300688132|gb|ADK30803.1| polyA polymerase family protein [Brachyspira pilosicoli 95/1000] Length = 464 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 100/452 (22%), Positives = 183/452 (40%), Gaps = 56/452 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I +L+ K +VGGAVRDS+M ++ + DI T P+ V R+F T +PT Sbjct: 12 VKEIARILHIEGFKCFLVGGAVRDSIMGITPHEYDITTDAKPEDVQRMFKYT----VPTG 67 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-Q 131 I +GT+ +I + +ITT RSD +DGR+ KV + + D RRD TINA+ + Sbjct: 68 IKHGTVLVIIEDMHVEITTFRSDGNYSDGRHPDKVEYASSIEEDLPRRDLTINAMAYNVL 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID G+ D++ + ++ +G+ + R ED LRI+R RF +I+ + A Sbjct: 128 DGTLIDMFDGMKDIKRKIVRSVGNPYERFSEDGLRIMRAIRFATKLN-FDIEKETFEAIC 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------IS 242 + L ++SERI E N +L + NP I + G+ I ++ + Sbjct: 187 HSTGMLASIASERIREEFNGILLSNNPFRGIELLRKTGVLPLIMPELMQGFGVNQNKFHK 246 Query: 243 LDQLSQVIEAEQVFEW----KIDSLLRFIVLISWQDKKSI-------------------- 278 D ++ Q E ++ L+R L K + Sbjct: 247 YDVYYHILHTIQAVEPLENDQLTLLVRLAALFHDIAKPMVQKKVSKQDDPVYYNHEVVGS 306 Query: 279 ---LSMAKKFSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 + K+ F+ + Q + +++ G + + LK+ Sbjct: 307 SVAKKIMKRLKYSNAEIEFVTLLVRQHMFYYQDEWTDGAVRRFMRAVGVENIKPLLKLRE 366 Query: 334 ALHYNNLTHQDT---------CFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGN 383 A + +D I +++ + G+D++ ++ + G +G Sbjct: 367 ADRIGSGNRKDKESKAIPKLLARIDKIIEAENAITVKDLKIDGNDLIREFNLKQGPMIGK 426 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 IL + ++ ++ L R + S+ Sbjct: 427 ILNYLLDLILDEPDLNEKDILIEKTRIFLESN 458 >gi|148543998|ref|YP_001271368.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri DSM 20016] gi|184153392|ref|YP_001841733.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri JCM 1112] gi|227364911|ref|ZP_03848956.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri MM2-3] gi|325682464|ref|ZP_08161981.1| poly A polymerase [Lactobacillus reuteri MM4-1A] gi|167006458|sp|A5VJK7|CCA_LACRD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|226702070|sp|B2G721|CCA_LACRJ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|148531032|gb|ABQ83031.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri DSM 20016] gi|183224736|dbj|BAG25253.1| polyA polymerase [Lactobacillus reuteri JCM 1112] gi|227070058|gb|EEI08436.1| tRNA CCA-pyrophosphorylase [Lactobacillus reuteri MM2-3] gi|324978303|gb|EGC15253.1| poly A polymerase [Lactobacillus reuteri MM4-1A] Length = 403 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 98/405 (24%), Positives = 170/405 (41%), Gaps = 16/405 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L + + ++ VGG VRD++++ + DIDIAT+ P + IF+ T + Sbjct: 11 EPARPVLQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNHT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R KV F R D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G+VID GL DL+ IK +G+ + R ED LR++R RF + + ID+ L Sbjct: 127 EDGEVIDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKL-DFVIDTATLKGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ ++ ERI E+ KLL +NP+ + G+++ ++ LS ++ Sbjct: 186 KENAPLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQYC-PGLENAQ-AALSALL 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 Q L + L D+K I KK+ ++ + Q Sbjct: 244 ILNQWHLENEAQLWSVLGLQLQLDQKEIGKFLKKWKTANDLIAQVKKVV--PAVQAIRQR 301 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 L + G+ + ++ + D + + + + G + Sbjct: 302 ALTPTLMFNTGETALHDANQVAKLYGWA----IDDEELQKAYQKLPIKNAKELAIDGRVL 357 Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + K G+ PG +G IL +N + L + ++ Sbjct: 358 ITKAGVKPGPLMGKILQQLTLAVVNGEIANNATVLLEKVEEITKE 402 >gi|171913058|ref|ZP_02928528.1| metal dependent phosphohydrolase [Verrucomicrobium spinosum DSM 4136] Length = 439 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 99/446 (22%), Positives = 180/446 (40%), Gaps = 56/446 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++I+ L + ++ GG VRD LM +D DIAT+ PD V R+F K+ Sbjct: 5 AVSIVRRLVEAGHQAVFAGGCVRDHLMGKEPKDYDIATSARPDEVQRLFPKS----FAVG 60 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 +G I + + F+I T R+D DGR + V + D+ RRDFT+N L+ D Sbjct: 61 AHFGVILVREGQHSFEIATFRNDGEYADGRRPESVTFTTAEEDAHRRDFTVNGLFYDPIN 120 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +V+DYVGG DL + ++ IGD R ED+LR+LR RF G I+ A ++ Sbjct: 121 DEVLDYVGGRQDLARQVLRAIGDPRKRFEEDHLRLLRAVRFATVLG-FEIEPGTWAAMLE 179 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + +S+ERI E++++L N + + + G+ + ++ + Q E Sbjct: 180 MAPKITSISAERIREELSRILLHPNRVRGFDLLVSSGLMASVLPEILVL------QGCEQ 233 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSM------------------------------- 281 F + D + +++ ++ LS+ Sbjct: 234 PPQFHPEGDVFIHTRIMLGLLPEQVSLSLVWSVLLHDIAKPATFSRDPDGRIRFNGHDKL 293 Query: 282 --------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 ++ P ++ + + K + I +L ++++ Sbjct: 294 GAEMAEEILRRLKYPNDVIEPTVEAVANHMVFKDVQKMRISRLKRFMARPGFEDEMELHR 353 Query: 334 AL-HYNNLTHQDTCFILQVLSDIIHWKKPLFP---LTGDDVVKYGIPPGKKVGNILVHCK 389 +N + FI Q + H PL P + G +++ GIP G +VG +L + Sbjct: 354 VDCQSSNGFSDNYDFIRQKQEEFGHDPLPLIPKPLINGHELMSLGIPKGPQVGELLTAVQ 413 Query: 390 QEWINSSFQLSQEDLHHLLRKLIASS 415 + S+E + + ++ Sbjct: 414 NLQLEGVLTSSEEAMAWVKENWKSTP 439 >gi|309804150|ref|ZP_07698228.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 11V1-d] gi|325912841|ref|ZP_08175219.1| tRNA adenylyltransferase [Lactobacillus iners UPII 60-B] gi|308163733|gb|EFO66002.1| tRNA adenylyltransferase [Lactobacillus iners LactinV 11V1-d] gi|325477834|gb|EGC80968.1| tRNA adenylyltransferase [Lactobacillus iners UPII 60-B] Length = 397 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 190/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 186 FDNHELLSKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 246 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 298 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELV 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G ++K GIP G ++G +L+ K+ + + + + L Sbjct: 351 IDGHYLLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 394 >gi|320170043|gb|EFW46942.1| tRNA nucleotidyl transferase [Capsaspora owczarzaki ATCC 30864] Length = 516 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 215/464 (46%), Gaps = 75/464 (16%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H+ S L I ++ IVGGAVRD LMN+ +D+D+AT LPD + +F + Sbjct: 26 HQVIGSSSLQEIHRVVTSHGYSIRIVGGAVRDLLMNIQPKDVDLATEALPDVLQHMFEEA 85 Query: 67 RYKVIPTSISYGTIKIICRK-----------------------------------KYFDI 91 +VIPT + +GT+ ++ + +++ Sbjct: 86 GIRVIPTGLKHGTVTVVFERPPSAAEQQQVVDNGTDPVAAAAATTAAAGNPRKLYDQYEV 145 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIK 151 TTLR D ITDGR+A+V FT DW D+ RRD N++ D G V DY GG+ DL+N I Sbjct: 146 TTLRVDKITDGRHAEVEFTSDWSLDAQRRDLRFNSMSIDFNGTVYDYFGGVQDLQNNHIA 205 Query: 152 FIGDAHHRILEDYLRILRFFRFFAHY------GEKNIDSDGLVASIKAKKGLKILSSERI 205 F+G A RI EDYLRILRFFRF+ G +++ L + L +S+ERI Sbjct: 206 FVGTADLRIKEDYLRILRFFRFYGRMCDSLGQGNVSVEPGTLECIAENAPNLSGISAERI 265 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----------DVQEISLDQLSQVIEAEQV 255 W E +K+L+ ++ + + M G+ I L +++ + +++ E Sbjct: 266 WLECSKILQQRSCPHTLEVMTRCGVANIIGLADLHQSVASSEIRLLQQLEMAVRHTTELA 325 Query: 256 FEWKI-DSLLRF-------IVLISW--QDKKSILSMAKKFSLPREIRYFLISF-FNCNFN 304 + D R+ ++ +S +++ S +A ++ L + R L+ FN + Sbjct: 326 LQLPPTDVADRWKEHAYIEMIRLSNIVKNEDSAAELALRWKLSNQQRDLLLFLVFNRHLV 385 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + S + + DKV + AL + ++ Q+ F P+FP Sbjct: 386 NEPDSAFARRLALDMLVDKVHPDWVA---ALVFPYVSPQEIYFA----------NIPVFP 432 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 L+GD + K G+P GK +G +L +Q W N+ FQ+S+ +L Sbjct: 433 LSGDVLAKSGVPKGKTMGLVLASTRQLWKNAGFQVSENELVQHA 476 >gi|320546952|ref|ZP_08041253.1| polyA polymerase family protein [Streptococcus equinus ATCC 9812] gi|320448354|gb|EFW89096.1| polyA polymerase family protein [Streptococcus equinus ATCC 9812] Length = 401 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 178/399 (44%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL + + ++ VGG+VRD L++ + D+DIAT+ P+ IF ++ + Sbjct: 13 ALPILKKIREAGYEAYFVGGSVRDVLLHRPIHDVDIATSSYPEETKSIF----HRTVDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 69 IEHGTVLVLEEGGEYEITTFRTEDVYVDYRRPSSVSFVRSLEEDLKRRDFTVNAFALDET 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID GL+DL+ + ++ +G+ R ED LRI+R FRF A + +I+ + A Sbjct: 129 GLIIDKFNGLDDLKAKLLRAVGNPAERFNEDALRIMRGFRFSASL-DFDIEPETFAAMAA 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A I M K + E + D L Q+++ Sbjct: 188 HAPLLEKISVERSFIEFDKLLMAPFWRKGITAMIASDAQKYL--PYLENAHDNLQQLLDD 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 S + L+ + K + + + + + + + + + T + + Sbjct: 246 LSCDYHFKSSEQAWAALLLALEIKDVRAFLRAWKTSSQFQKDVEKIVSIYRFRMTSELDK 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 ++ Y L++ L D I ++ ++ K + G ++K Sbjct: 306 MEMYSYGRNLIEQAEDLRLGFGL------PVDFDIIDRLDKELTIHDKHEIVVNGGILIK 359 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 PG ++G IL +++ + +E + +RK Sbjct: 360 EMQYKPGPELGKILKEIEKQIVLGELANDKEAIFEFIRK 398 >gi|325473481|gb|EGC76676.1| PolyA polymerase [Treponema denticola F0402] Length = 448 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 90/435 (20%), Positives = 179/435 (41%), Gaps = 48/435 (11%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I S+ + +VGGAVRD + +D DIAT P V +F KT IPT I+ Sbjct: 11 EIASVFFNAGFSAYLVGGAVRDWFLGKPCKDYDIATDAEPKEVQALFRKT----IPTGIA 66 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QG 133 +GT+ I+ + + + TT R + +DGR + + + R + D RRDFT+NA+ G Sbjct: 67 HGTVTILYKGEKIECTTFRCEADYSDGRRPQSINYVRSIEEDLSRRDFTMNAIAVSLKDG 126 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D G+ ++++TIK +G R ED LR +R RF + G K I+ + L A + Sbjct: 127 SIVDPFEGVKSIKSKTIKNVGSPLDRFGEDGLRPIRAIRFASQLGFK-IEEETLKAIPLS 185 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + K +S ER E K+L +++P+ ++ + + G+ K ++ + + + + Sbjct: 186 IEVCKKVSIERFRDEFVKMLLSEHPIISLKLLEDTGLLKVFLPELSDCRGVEQKGMHSFD 245 Query: 254 QVFE--------WKIDSLLRFIVLISWQDKKS----------------------ILSMAK 283 + + ++++R L K S + + Sbjct: 246 VLDHSFLSCDAAPQDNTIVRLAALFHDIGKVSTREKNEYGDYTFYKHESVSEKLTKKIMQ 305 Query: 284 KFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 + P + + + + + +++ G + + + A + Sbjct: 306 RLKFPNKEIEEVSHLVGLHMFHYTEDWTDAAVRRFIVRAGVENIPNLFDLRRADGFGMTG 365 Query: 342 HQD--------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 + +V+++ + G ++++ GIP G K+G IL + + Sbjct: 366 QAPDLSNLAAFKKRLEKVIAEDSALSLKDLAVGGRELMEIGIPAGPKLGIILQKLFEAVL 425 Query: 394 NSSFQLSQEDLHHLL 408 Q ++ L + Sbjct: 426 EDPSQNTKAQLLKIA 440 >gi|194467926|ref|ZP_03073912.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri 100-23] gi|194452779|gb|EDX41677.1| Polynucleotide adenylyltransferase region [Lactobacillus reuteri 100-23] Length = 403 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 99/405 (24%), Positives = 169/405 (41%), Gaps = 16/405 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + + ++ VGG VRD++++ + DIDIAT+ P + IF+ T + Sbjct: 11 EPARPILQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNHT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R KV F R D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGTGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G+VID GL DL+ IK +G+ + R ED LR++R RF + + ID+ L Sbjct: 127 EDGEVIDLFDGLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKL-DFVIDTATLKGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L+ ++ ERI E+ KLL +NP+ + G+++ ++ LS ++ Sbjct: 186 KENAPLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQYC-PGLENAQ-AALSALL 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 Q L + L D+K I KK+ ++ + Q Sbjct: 244 ILNQWHLENEAQLWSVLGLQLQLDQKEIGKFLKKWKTANDLIAQVKKVV--PAVQAIRQR 301 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 L + G+ + ++ + D + + + + G + Sbjct: 302 ALTPTLMFNTGETALHDANQVAKLYGWA----IDDEELQKAYQKLPIKNAKELAIDGRVL 357 Query: 371 V-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + K G+ PG +G IL +N L + ++ Sbjct: 358 ITKAGVKPGPLMGKILQQLTLAVVNGEIANDATVLLEKVEEITKE 402 >gi|313123922|ref|YP_004034181.1| cca-adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280485|gb|ADQ61204.1| CCA-adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 396 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 103/398 (25%), Positives = 173/398 (43%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T Sbjct: 13 AMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ D R KV F ++ D RRDFTINAL ++Q Sbjct: 69 IQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQ 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 129 GEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQL-SFSLEEKTRQAIIN 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E KL K+ A G+ +E DQLS + Sbjct: 188 NHELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEEC--PGLAGKKDQLSVFTDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + VLI+ K + K + + +++ F+ Sbjct: 246 KAGPDDETVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGGESDF 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + G + + A LK+ L + +L + + + G + Sbjct: 306 D-----LFEIGQENLEAALKLAGLLG----KPLSSQVLLDRYNRLPIKAAGELAIDGQWL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K GI P ++G +L + ++ + SQ + L Sbjct: 357 IKEGIKPSPELGQLLRKALEGVVSGQVENSQAAIAEFL 394 >gi|104774167|ref|YP_619147.1| tRNA CCA-pyrophosphorylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122397131|sp|Q1G9U3|CCA_LACDA RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|103423248|emb|CAI98081.1| tRNA nucleotidyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 396 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 103/398 (25%), Positives = 175/398 (43%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T Sbjct: 13 AMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ D R KV F ++ D RRDFTINAL ++Q Sbjct: 69 IQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQ 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 129 GEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQL-SFSLEEKTRQAIIN 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E KL K+ A G+ +E DQLS + + Sbjct: 188 NHELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEEC--PGLAGKKDQLSVLTDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + VLI+ K + K + + +++ F+ + Sbjct: 246 KAGPDDEAVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGEESDF 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + G + + A LK+ L + +L + + + G + Sbjct: 306 D-----LFEIGQENLEAALKLAGLLG----KPLSSQVLLDRYNRLPIKAAGELAIDGQWL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K GI P ++G +L + ++ + SQ + L Sbjct: 357 IKEGIKPSPELGQLLRKALEGVVSGQVENSQAAIAEFL 394 >gi|312871384|ref|ZP_07731479.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 3008A-a] gi|311093037|gb|EFQ51386.1| tRNA adenylyltransferase [Lactobacillus iners LEAF 3008A-a] Length = 397 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 192/404 (47%), Gaps = 28/404 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL+ +NK ++ VGG VRD L+N + DIDIAT+ P+ + +IF KT I Sbjct: 11 KAALPILNKINKVGYEAYFVGGCVRDLLLNRHIHDIDIATSAYPEEIKQIFEKT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++ITT R++ D R KV F ++ D RRDFTINAL D Sbjct: 67 TGIKHGTVTVLYEGQSYEITTFRTESGYQDYRRPDKVTFVQNLSEDLKRRDFTINALAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +GK+ID+ GLNDL IK +G A +R ED LR++R RF + G +D D A Sbjct: 127 AEGKIIDHFYGLNDLVVHNIKAVGKAENRFHEDALRMMRAVRFMSQLG-FELDLDTKKAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQV 249 + L+ +S ERI E K+ K+ A + ++ E+ +L+ ++ L S++ Sbjct: 186 FDNHELLRKISIERIRDEFVKMGVGKSSKRAFEVFLDTELYNEVPYLEHKKEQLSVFSKL 245 Query: 250 ---IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 E+ F I LL+ + + K + Y +++FF+ Sbjct: 246 NFSPVTEETFWATIIILLKL----PNNEIAKFMRAWKNSNAMEHCVYDIVTFFDLL---- 297 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKPLFP 364 + IP +LF D I L +N+ Q ++ I+ + + Sbjct: 298 SYRIPSNYELFSTNLD-------TIMQTLDLSNILGQPVNSQAIIDRYEALPLKNESELV 350 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+ ++K GIP G ++G +L+ K+ + + + + L Sbjct: 351 IDGNYLLKKGIPAGPRIGELLIEIKKAILERKLENNISAIDVFL 394 >gi|223982596|ref|ZP_03632831.1| hypothetical protein HOLDEFILI_00105 [Holdemania filiformis DSM 12042] gi|223965433|gb|EEF69710.1| hypothetical protein HOLDEFILI_00105 [Holdemania filiformis DSM 12042] Length = 416 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 101/403 (25%), Positives = 170/403 (42%), Gaps = 22/403 (5%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L LN+ ++ VGG VRD+L+ VQD+D+ T+ LP++ + F Y VIPT + +G Sbjct: 13 LKCLNEAGYEAWWVGGCVRDTLLGRPVQDVDVTTSALPEQTIVCFRNAGYPVIPTGLKHG 72 Query: 79 TIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVI 136 T+ ++ + ++TT RSD D R+ + V FTR D RRDFTINAL + Sbjct: 73 TVTVMIQDIPIEVTTYRSDSDYQDHRHPESVRFTRSLWEDCARRDFTINALCWHPDLGLR 132 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 DY G DL+N+ I IG+ + R ED LRILR RF + G +D A ++ Sbjct: 133 DYFHGQRDLKNKVIACIGNPYQRFDEDALRILRALRFASTLG-FALDLGTRQALFHQEEL 191 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L++LS+ERI E+ K++ N I +F + + Q + +A F Sbjct: 192 LRVLSAERIAREMEKMVVGLRWPEIFA--NNYEILAVLFPQLPALQSPQ--AIQKAFDTF 247 Query: 257 EW-KIDSLLRFIVLISWQDK-------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + +L R ++ L + + + LI + Sbjct: 248 RFCPPVTLPRLACFFLETEQTPLVYCIDQALHWTGQLKFSNQNKKNLIQLVRYQNHPIPQ 307 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW---KKPLFPL 365 ++ L + D+ +++ AL N LT + ++ +I + Sbjct: 308 DRVSLRLLIHELPDR-FGEWIQLQQAL--NRLTPEQAAHLIAASEEIRGHDCLTLKQLAI 364 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G D++ G P ++ +L + + L + Sbjct: 365 NGADLIAAGCPR-PQISALLKQSLNAVMEDQIPNQKAALLRFV 406 >gi|255003514|ref|ZP_05278478.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Puerto Rico] Length = 405 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 119/375 (31%), Positives = 176/375 (46%), Gaps = 10/375 (2%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 + + + +VGG VRDS++ DID+AT ++P+ V++ K IPT I +G Sbjct: 1 MEAIEGARGNARLVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAGIKTIPTGIKHG 60 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ + ++ITTLR DL DGR+A V FT W D+ RRDFT NALY D+ GK+ DY Sbjct: 61 TVTAVVAGIPYEITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNALYCDKHGKIYDY 120 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI-KAKKGL 197 G+ DL NRT+ FIGDA RI ED+LRILR FRF A +K+ S+ ++ K L Sbjct: 121 FSGMQDLENRTVVFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEIIFLCNKYADSL 180 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 LS ERI SE KLL N + + M G+ ++ + + +LS A + Sbjct: 181 AKLSRERIRSEFFKLLACTNCASTLKIMEGCGVLHQVVP--YPVQIGRLSCTHLAGRAPI 238 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 K+ ++L+ L + S + + N F LS + +K Sbjct: 239 TKLAAILKGYAHTDMSGTVEGLEALLRLSRKEKKLLETLLTTNLPF---PLSTTQQQKYL 295 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 G V + + L+ L + P++G D+ K G Sbjct: 296 NDLGTDVYRDLVIVSFLSK----ETLSASAFLEHLEYTKQFAPLSLPVSGKDLAKLGYKE 351 Query: 378 GKKVGNILVHCKQEW 392 GK +G+ L K+ W Sbjct: 352 GKLLGHTLKRLKETW 366 >gi|167749856|ref|ZP_02421983.1| hypothetical protein EUBSIR_00824 [Eubacterium siraeum DSM 15702] gi|167657168|gb|EDS01298.1| hypothetical protein EUBSIR_00824 [Eubacterium siraeum DSM 15702] Length = 438 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 104/437 (23%), Positives = 180/437 (41%), Gaps = 55/437 (12%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL LN ++ VGG VRD L+ +D D+ T+ LP++++ +F Y+++ + Sbjct: 9 EILQKLNNNGYEAYCVGGCVRDYLLGQCPEDYDVTTSALPEQIIEVFD--GYRLLTVGLK 66 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ +I K +ITT R D D R+ KV FT + D RRD TINA+ + + Sbjct: 67 HGTVTVIINKHPVEITTYRIDGEYIDHRHPSKVGFTPNLADDLARRDLTINAIAYNDKVG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D GG DL+N I+ +GD R ED LRILR RF + YG +ID A + K Sbjct: 127 MVDLYGGAEDLKNGIIRCVGDPMKRFDEDGLRILRALRFASRYG-FSIDKATSDAIHRQK 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG-GIFKEIFLDVQEISLDQLSQVIEAE 253 L +S+ERI SE+ +L + N + EI ++ + + Sbjct: 186 FLLSFISAERINSELCGILTGD----CYDILRNYSDVICEIIPEMYPCIGFEQHSKYHNK 241 Query: 254 QVFEWKIDSL--------LRFIVLISWQDKKS---------------------ILSMAKK 284 V+ + ++ R +L+ K + ++ Sbjct: 242 TVYGHIVATVAAAEPTVEARLTMLLHDIGKPDSFFMKDGAGHFYGHADVSCKIAEKILER 301 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 +I+ ++ + I I++ YG + LK+ +Y+ Sbjct: 302 LRFSNKIKDEVLFLIENHGIVINDDIRSIRRGVARYGAERF---LKLIKVHYYDTCGKSP 358 Query: 345 TCFILQVLSDIIHWKKPLF------------PLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 F + L D I F + G D+ + G GK++G L ++ Sbjct: 359 AYFGEKALFDSIEKHTREFLQNEPPMSLKQLKVNGSDISRLGFT-GKEIGKALNFLLEQV 417 Query: 393 INSSFQLSQEDLHHLLR 409 +N + + ++ L L+ Sbjct: 418 VNGNCKNDKDSLLALIE 434 >gi|239636869|ref|ZP_04677868.1| cca-adding enzyme [Staphylococcus warneri L37603] gi|239597543|gb|EEQ80041.1| cca-adding enzyme [Staphylococcus warneri L37603] Length = 400 Score = 285 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 98/409 (23%), Positives = 171/409 (41%), Gaps = 26/409 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL+ + + ++ VGG+VRD LM + DIDI T+ PD + IF T IP Sbjct: 7 ESAKPILNQIQQHGYQAYFVGGSVRDYLMQRPIHDIDITTSATPDEIESIFDHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFTINA+ D Sbjct: 63 IGKEHGTINVVYNHENYEVTTFRAEEEYIDHRRPSDVHFVRDLYEDVQRRDFTINAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + DY G +D++N I+ +G R ED LRILR RF + K I++ A Sbjct: 123 TDYQTFDYFNGEDDIKNGIIRTVGQPTERFEEDALRILRGLRFQSQLNFK-IENHTFKAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + +K LS ERI E+ KL+ +N + H+ F I Q Sbjct: 182 ANQIEDIKYLSIERIIVELKKLISGRNVATSYHHLNQLKAFNYI----------PYFQNF 231 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E + + +I LI+ + + + + + + N T+S Sbjct: 232 EMHLLNIDEPMHFDTWIALINSKFDEQ--QSLSPLKISNKEKSHIKQLTNIISQLPTIST 289 Query: 311 -PEIKKLFYLYGDKVMIAKLKIFLALHYN-----NLTHQDTCFILQVLSDIIHWKKPLFP 364 ++ + Y Y ++ +++ L N N + I++ + ++ Sbjct: 290 KKDLIMMVYDYDINDILTVIELSTLLSKNQFETPNPLMINPQSIMESYHQLPIHERQQLA 349 Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + G D+++ G V ++L + I + +++ + K + Sbjct: 350 VNGSDLMQHLNQRGGPWVKDVLRQIECAVITKQVINTHDEIMKWVDKHV 398 >gi|325686007|gb|EGD28067.1| poly A polymerase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 409 Score = 285 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 102/398 (25%), Positives = 174/398 (43%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T Sbjct: 26 AMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTG 81 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ D R KV F ++ D RRDFTINAL ++Q Sbjct: 82 IQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQ 141 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 142 GEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQL-SFSLEEKTRQAIIN 200 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E KL K+ A G+ +E DQLS + Sbjct: 201 NHELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEEC--PGLAGKKDQLSVFTDL 258 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + VLI+ K + K + + +++ F+ + Sbjct: 259 KAGPDDEAVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGEESDF 318 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + G + + A LK+ L + +L + + + G + Sbjct: 319 D-----LFEIGQENLEAALKLAGLLG----KPLSSQVLLDRYNRLPIKAAGELAIDGQWL 369 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K GI P ++G +L + ++ + +Q + L Sbjct: 370 IKEGIKPSPELGQLLRKALEGVVSGQVENNQAAIAEFL 407 >gi|327385606|gb|AEA57080.1| Poly A polymerase [Lactobacillus casei BD-II] Length = 398 Score = 285 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 100/403 (24%), Positives = 169/403 (41%), Gaps = 24/403 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I IL + ++ VGG+VRD+++ L + D+DIA++ P + RIF +T Sbjct: 11 KAAIPILKKIEAAGYEAYFVGGSVRDAILGLPIHDVDIASSAYPAEIKRIFKRTA----D 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ +++TT R++ D R V F R D RRDFTINAL Sbjct: 67 TGIEHGTVMVLDHGTGYEVTTFRTESRYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +ID GL DL++ ++ +G+ H R ED LR++R RF + G I+ A Sbjct: 127 HDGTIIDLFDGLKDLQHHQLRAVGNPHERFHEDALRMMRAVRFESQLG-FGIEPATKAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 K L +S ER+ +E N+LL + + +F + E +L Q SQ Sbjct: 186 ADNAKLLVHISVERVAAEFNRLLTGIDRRAGLQDFIETRLFAY-APKMAAHETALTQFSQ 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + + + I L+ Q L M K + E+ + Sbjct: 245 LPDTQ--LTSLASGWAALIFLLRTQP----LVMLKAWKQSNELITLVTQTVKLLQVMPNP 298 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + Y G+ + ++ L D + + + + K LTG Sbjct: 299 TAWD----LYQAGEAAVTTASEVQKLL----TPDFDQQQLAEAYAALPIHSKKELALTGA 350 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 D +K G+ PG +G L +Q + + + L + ++ Sbjct: 351 DQIKAGVRPGPAMGKALNQIEQRVVAGALPNELKKLLPIATEM 393 >gi|73619752|sp|Q7SIB1|CCA_GEOSE RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|27573947|pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme In Complex With Ctp gi|27573948|pdb|1MIY|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme In Complex With Ctp Length = 404 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 96/399 (24%), Positives = 176/399 (44%), Gaps = 16/399 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + + VGGAVRD L+ + D+DIAT+ LP+ VM IF KT I Sbjct: 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPKT----IDV 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 +GT+ ++ + K +++TT ++D D R + V F R + D RRDFT+NA+ D+ Sbjct: 63 GSKHGTVVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDE 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GG +R R I+ +G+A R ED LR++R RF + G + D A + Sbjct: 123 YGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELG-FALAPDTEQAIV 181 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L +S ER+ E+ KLL A+ + G+ + ++ + + Sbjct: 182 QNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAYL----PGLAGKEKQLRLA 237 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 A + W R+ +L + + + LP ++ + + Sbjct: 238 AAYRWPWLAAREERWALLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRPEAW 297 Query: 312 EIKKLFYLYGDKVM-IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++LF ++ + + ++ H+ + + + + K + G DV Sbjct: 298 TNEQLFSAGLERALSVETVRAAFTGAPPGPWHEK---LRRRFASLPIKTKGELAVNGKDV 354 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +++ G P G V L + +N + +E ++ L Sbjct: 355 IEWVGKPAGPWVKEALDAIWRAVVNGEVENEKERIYAWL 393 >gi|255004636|ref|ZP_05279437.1| poly (A) polymerase (pcnB) [Anaplasma marginale str. Virginia] Length = 405 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 119/375 (31%), Positives = 176/375 (46%), Gaps = 10/375 (2%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 + + + +VGG VRDS++ DID+AT ++P+ V++ K IPT I +G Sbjct: 1 MEAIEGARGNARLVGGCVRDSVLGRDTTDIDLATDLVPEMVIQALGSAGIKTIPTGIKHG 60 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ + ++ITTLR DL DGR+A V FT W D+ RRDFT NALY D+ GK+ DY Sbjct: 61 TVTAVVAGIPYEITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNALYCDKSGKIYDY 120 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI-KAKKGL 197 G+ DL NRT+ FIGDA RI ED+LRILR FRF A +K+ S+ ++ K L Sbjct: 121 FSGMQDLENRTVVFIGDAEARINEDFLRILRVFRFHASICDKSPLSEEIIFLCNKYADSL 180 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 LS ERI SE KLL N + + M G+ ++ + + +LS A + Sbjct: 181 AKLSRERIRSEFFKLLACTNCASTLKIMEGCGVLHQVVP--YPVQIGRLSCTHLAGRAPI 238 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 K+ ++L+ L + S + + N F LS + +K Sbjct: 239 TKLAAILKGYAHTDMSGTVEGLEALLRLSRKEKKLLETLLTTNLPF---PLSTTQQQKYL 295 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 G V + + L+ L + P++G D+ K G Sbjct: 296 NDLGTDVYRDLVIVSFLSK----ETLSASAFLEHLEYTKQFAPLSLPVSGKDLAKLGYKE 351 Query: 378 GKKVGNILVHCKQEW 392 GK +G+ L K+ W Sbjct: 352 GKLLGHTLKRLKETW 366 >gi|23099220|ref|NP_692686.1| poly(A)polymerase [Oceanobacillus iheyensis HTE831] gi|73619814|sp|Q8EQD6|CCA_OCEIH RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|22777449|dbj|BAC13721.1| poly(A)polymerase [Oceanobacillus iheyensis HTE831] Length = 400 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 103/409 (25%), Positives = 178/409 (43%), Gaps = 21/409 (5%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 ++ + S IL+ L + VGG VRD L+ + DIDIAT+ P+ VM +F Sbjct: 1 MISEPFLKAS---PILTTLISNGYEGYFVGGCVRDLLLQKDIHDIDIATSATPNEVMHLF 57 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRD 121 KVIP I +GT+ + + +++TT R D TD R V F + D RRD Sbjct: 58 K----KVIPVGIEHGTVIVRHGGESYEVTTYRQDGEYTDHRRPNDVRFVTNLAEDLRRRD 113 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTINAL D G++ D G +DL+ + I+ +G+A R ED LRILR RF + G Sbjct: 114 FTINALAMDTSGQITDLFHGQDDLKKKLIRTVGNAEERFTEDALRILRAVRFSSQLGC-T 172 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I D L A +K ++ L+ ERI E+ KL + ++ AI ++ + + +++ Q Sbjct: 173 IQEDTLEAMFVIRKQIQHLAVERITIELTKLFQGQHVSKAIQYIIDLQLDEQL-PIFQSG 231 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 D + E + + F +L I K + ++ I N Sbjct: 232 KSDIFKAMKENITPLHSFSEVIAVFHLL---DPTIKIHDWIKNYKCSNHVKNDTIQLINA 288 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 ++ I L Y+ K+ +++ + + + I + + K+ Sbjct: 289 YHYYQSHGINNW--LLYILPTKLWDGFIRLIYVIDRTTIERKQLEEIT---ATLPIDKRS 343 Query: 362 LFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 L G+D++ + P GK + +L + ++ ++ + + Sbjct: 344 QLHLDGNDLMNWFPHRPKGKWIKILLEEVEYLVVSKQLPNEKKIIKEWV 392 >gi|327489640|gb|EGF21432.1| polyA polymerase family protein [Streptococcus sanguinis SK1058] Length = 399 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 187/400 (46%), Gaps = 17/400 (4%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L + ++ VGG+VRD+L+ + D+DIA++ P+ RIF +T + Sbjct: 12 EALPVLEKIKVAGFEAYFVGGSVRDALLQRPIHDVDIASSSYPEETKRIFDRT----VDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ + +++TT R++ + D R KV F R + D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLENNREYEVTTFRTEDVYVDYRRPSKVSFVRSLEEDLKRRDFTINALALDE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID GLNDL N+ ++ +G A R ED LRI+R FRF A + +++ D A Sbjct: 128 NGQVIDLFQGLNDLENQILRAVGTAAERFNEDALRIMRGFRFQAAL-DFDLEQDTFAAMK 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L+ +S ERI+ E +KLL A + + G + FL + S +L ++ + Sbjct: 187 DCAPLLEKISVERIFIEFDKLLLAPFWRKGLEALLTSGAIE--FLPDLKGSRAKLERLFD 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 F + S + L+ D +++ KK+ RE + + + Sbjct: 245 LASDFRFSA-SEQAWAALLLALDLQNVKGFLKKWKTSREFAKKVEDLVEIAAIRSERDLT 303 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 K+ Y Y +++ ++ A D I + + + K + G ++ Sbjct: 304 --KRDCYDYDIDLLLQAEELRQA----QGLPVDFSAIQNLDASLTIHNKQEMVVNGGMLM 357 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ PG K+G IL + ++ E ++ +++ Sbjct: 358 REFDFEPGPKLGQILKELEYAIVDGRLPNDLEAIYAYIKE 397 >gi|291460610|ref|ZP_06600000.1| CCA-adding enzyme [Oribacterium sp. oral taxon 078 str. F0262] gi|291416801|gb|EFE90520.1| CCA-adding enzyme [Oribacterium sp. oral taxon 078 str. F0262] Length = 441 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 106/424 (25%), Positives = 190/424 (44%), Gaps = 42/424 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L ++ VGG VRDSL+ + +D DI ++ P+ + R+F +T + T Sbjct: 28 VQRIIGRLESAGFEAYAVGGCVRDSLLGRTPEDWDITSSARPEELKRLFKRT----VDTG 83 Query: 75 ISYGTIKIICRKKY-------FDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTIN 125 I +GT+ ++ F++T+ R D DGR+ + V FT D RRDFTIN Sbjct: 84 IQHGTVTVLIGGGEGGKRAQAFEVTSYRVDGEYKDGRHPESVRFTPSLSEDLSRRDFTIN 143 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ +++ ++D G+ DL R I+ +G+A R ED LR+LR RF A I Sbjct: 144 AMAYNEKSGIVDLFQGMEDLERREIRAVGEAELRFREDALRMLRALRFSAQL-RFRIAPG 202 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEIS 242 L A +GL +S ERI E+ KLL + +P + ++ G+ + F ++ S Sbjct: 203 TLEAVRSLARGLSRVSKERIRGELTKLLLSDSPEQ-MELVFQTGLAPYVSEHFPEIASPS 261 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L +LS +E E + LR+ +L+ +++ + ++ + R S + Sbjct: 262 LPELSGDMERE--------AFLRWGMLLRGREQL-AKRILRELKMDRATIDRAGSIAALH 312 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN----------NLTHQDTCFILQVL 352 + PE ++L YG+++ + L + AL + Q + L Sbjct: 313 GERIPEEAPEARRLLSRYGEELFFSWLSMEEALALHFPREREAPLPGERSQGKIRRARAL 372 Query: 353 SDIIHWKKPLFP-----LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + I + G+D+ + GIP G + +L E + + +E L Sbjct: 373 GEEILKNGDCLSLSALMINGEDLAELGIPRGPEYSAVLRALLSEVLEDPKRNRREYLRKR 432 Query: 408 LRKL 411 ++++ Sbjct: 433 VKEI 436 >gi|257457449|ref|ZP_05622619.1| tRNA adenylyltransferase [Treponema vincentii ATCC 35580] gi|257445178|gb|EEV20251.1| tRNA adenylyltransferase [Treponema vincentii ATCC 35580] Length = 456 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 169/436 (38%), Gaps = 50/436 (11%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L I + +VGGAVRD + + D DIAT P VMR+F +T IPT Sbjct: 11 LKEISGYFRNAGFSAYLVGGAVRDFFLKKAASDWDIATDAQPQEVMRLFRRT----IPTG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-Q 131 I +GT+ II + K+ + TT R++ TDGR+ V +T + D RRDFT+NA+ Sbjct: 67 IEHGTVTIIYKSKHIECTTFRTEADYTDGRHPAAVSYTATIEEDLSRRDFTMNAIAVSLP 126 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G + D G D+R I+ +G+ R LED LR +R RF A G ID L A Sbjct: 127 DGIIADPFNGCADIRAGRIRTVGNPLDRFLEDGLRPVRAVRFAAQLG-FAIDGKTLEAIP 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------- 242 +A + +S ER E K+L PL + M + G+ ++ E Sbjct: 186 QALHITQKISIERFREEFTKMLACPAPLTGLRLMESTGLLNLFIPELAECRGVEQGSFHH 245 Query: 243 LDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMA------------------- 282 D L ++ + +R L K + A Sbjct: 246 FDVLDHSFLVCNACPAGMEHIHIRLAGLFHDIGKPATRKQAADGSYTFYRHEAVSEKITR 305 Query: 283 ---KKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 ++ + + + +++ G + + + A + Sbjct: 306 SIMRRLKYSNAEIEKTAHLVAQHMFHYDPSWTDAAVRRFIVRVGKENIDDLFALRKADVF 365 Query: 338 N--------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 N + T I ++L + + + G D++ GIP GK +G +L Sbjct: 366 GLTGSYTEPNFLVEFTARIDKILKEDGAYSLKDLAVNGKDLMALGIPAGKCLGLVLHDLL 425 Query: 390 QEWINSSFQLSQEDLH 405 + ++ Q ++E L Sbjct: 426 ETVLDDPAQNTKETLL 441 >gi|19572329|emb|CAD19096.1| polynucleotide adenyltransferase [Stigmatella aurantiaca] Length = 423 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 102/424 (24%), Positives = 173/424 (40%), Gaps = 24/424 (5%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M H+ ++++L L + +VGG VRD L ++ +D D+A++ LP V Sbjct: 1 MTFESLHRADIPRPILDVLQRLRELGFAVFLVGGCVRDILRGVAPKDFDVASSALPQEVQ 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSL 118 F KVIPT I +GT+ ++ + ++TT RS+ DGR V F RD D Sbjct: 61 GAFK----KVIPTGIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLS 116 Query: 119 RRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+ D G +++D GG+ DL R I+ + R ED LR LR RF A Sbjct: 117 RRDFTINAMAYDPLGRELVDPFGGMTDLHARLIRCVRSPIERFSEDGLRPLRAVRFAAVL 176 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +D A + ++ ER+ E KLL + + + G+ + + Sbjct: 177 G-FTLDPATRDAIPPTLPVFRKVALERVREEFVKLLLSPRAELGLSLLVETGLLEAFLPE 235 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK-KSILSMAKKFSLPREIRYFLI 296 + + A Q +++ +R L++ + +A + P ++ + Sbjct: 236 LSSAGDEAARMARAAVQGAPAEVE--IRLAALLADLVRGSQARDIALRLKFPTKVADTVG 293 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 ++ + + +V A L+ LA+ + + + + VL Sbjct: 294 LLVEHAALEE--RTEQAEPALRRLLAQVGPALLEPLLAVARSRVEARQPERLPSVLRLQE 351 Query: 357 HWKK----------PLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 + LTG D++ GI P +VG + ++ E L Sbjct: 352 RLRTLAAAKPPLTSKELALTGKDIMAALGIGPSPQVGEATRFLLEAVLDDPALNESERLK 411 Query: 406 HLLR 409 LLR Sbjct: 412 DLLR 415 >gi|227486244|ref|ZP_03916560.1| possible tRNA adenylyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227235780|gb|EEI85795.1| possible tRNA adenylyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 449 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 112/434 (25%), Positives = 182/434 (41%), Gaps = 47/434 (10%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L L KS +VGG VRD LM D+DIAT PD + +F YK + + Sbjct: 10 EVLFRLEDKGYKSYLVGGFVRDKLMGKPPSDVDIATKAFPDEIKEVFKD--YKTLDVGKA 67 Query: 77 YGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTIK++ + ++ITT R D D R V+F + D RRDFTINA+ + + Sbjct: 68 FGTIKLVADDRDYEITTFRKDFSYKDKRRPGSVIFADTIEEDLKRRDFTINAMALSKD-E 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG DL + I+ +G+ + RI EDYLR LR RF A+ G +I++D A Sbjct: 127 LIDPYGGQADLEAKIIRAVGNPYERINEDYLRALRAVRFAANLG-FDIENDLKEAIRSKV 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLD 244 K L +S ER +EI+K+L +P + + G+ IF +V+ + +LD Sbjct: 186 KNLAYISVERQTAEIDKILLGPDPARGLRLLDETGLLGGIFPEVKAMVGFDQHSPHHNLD 245 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-------------------AKKF 285 ++ + +D +R L K S + ++ Sbjct: 246 CFDHTLKVLE--GTPLDLTIRLAALFHDTGKPSTFFLDENGNGRFFGHQKISKDLAEERL 303 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL---TH 342 + + + S P +K ++ LK L ++ H Sbjct: 304 RYLKYSKKLIEDVGVLIGRHMDSSNPYTEKSVARLLRRIGEENLKRLFDLQEADILATVH 363 Query: 343 QDTCFI---LQVLSDIIHWK----KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 D I +L +I+ K + + G D+ K G G +G IL ++E + Sbjct: 364 DDISNIDKGRNLLKEILEKKPVLSRKDLAINGRDLTKIGFDEGPDIGFILRKIEKEVFDG 423 Query: 396 SFQLSQEDLHHLLR 409 + ++ L + R Sbjct: 424 TLSNDRQILLNEAR 437 >gi|170017048|ref|YP_001727967.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc citreum KM20] gi|226702072|sp|B1MYC1|CCA_LEUCK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|169803905|gb|ACA82523.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc citreum KM20] Length = 403 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 101/405 (24%), Positives = 181/405 (44%), Gaps = 18/405 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL + ++ VGGAVRD L+N + D+DIAT+ P+ + +F+KT + T Sbjct: 13 AQPILEHIESAGFEAYFVGGAVRDMLLNKPIHDVDIATSAFPEEIKALFTKT----VDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ TD R KV F R D RRDFTINA+ + Sbjct: 69 IQHGTVMVLDHGDGYEITTFRTESTYTDFRRPDKVTFVRSLAEDLKRRDFTINAIAMTKD 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID GL D+ + I+ +GDA R ED LRI+R RF A G +I A + Sbjct: 129 GDIIDLFDGLTDMAQKRIRAVGDAEVRFNEDALRIMRALRFSAQLG-FDIAPHTKAALKQ 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L+ ++ ERI E KLL + N++ + + + +++ ++ ++ Sbjct: 188 IGRNLEKIAVERIRVEFEKLLMGQYASNSLSVAIEADLIRYLPGHIKKEDWLTITADLKR 247 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 Q + F+ +S + + L M + + RE ++S + +T+S+ E Sbjct: 248 NQPQARTVI-WPYFLSRLSLRLNELQLFM-RSWKTSREDMRAVLSIVPIVKHVQTVSVFE 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + + + +F L + Q+ + ++G D++ Sbjct: 306 LYA--------IYDYQALLFEVLTLIGTPLATQQRVKQIFDALPITHNRDMCISGGDLLA 357 Query: 373 YGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 I PG ++G IL + I + L ++L+ + + Sbjct: 358 NNIVTPGPQMGRILTQLEHAVIQRIISNRPDSLLEYAKELVDNEK 402 >gi|126734430|ref|ZP_01750177.1| polyA polymerase family protein [Roseobacter sp. CCS2] gi|126717296|gb|EBA14160.1| polyA polymerase family protein [Roseobacter sp. CCS2] Length = 378 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 135/406 (33%), Positives = 198/406 (48%), Gaps = 31/406 (7%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ + W D + LL ++ VGG VR+ L++ V D+D++T LP+ VM+ Sbjct: 1 MTRISAPWLDDDASQQVCKLLADAGYQAWFVGGCVRNELLDEPVADLDLSTDALPEFVMK 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + K IPT I +GT+ +I F+ITT R D+ TDGR A V ++ + D+ RRD Sbjct: 61 LAKAAKIKAIPTGIDHGTVTLIVDDVPFEITTFRRDVATDGRRATVAYSDNMTDDARRRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYAD G++ D +GGL DL+ R I+FI DA RI EDYLRILRFFRF+A YG+ N Sbjct: 121 FTMNALYADADGQIADPLGGLPDLKARRIRFIEDADRRIKEDYLRILRFFRFYAWYGDVN 180 Query: 182 --IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D DGL A +GL+ LS ERI +E+ KLL A +P A+ M + G ++ + Sbjct: 181 DGPDVDGLAACADNIEGLQSLSVERITAEMLKLLAAPDPAPALASMTSTGALAQVLPGAE 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 S L+ +I EQ + L R VL L + L Sbjct: 241 PGS---LAVLIHLEQSLTIAPNPLRRLAVLGGKPGDA--------LRLSKTQMRTL---- 285 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 S + Y +G +V + L + A ++ L I + Sbjct: 286 -----DHLTSGLSPVEASYRHGVQVGLDVLLVQSASLGQDIDK-------TALKPIENAA 333 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 K +FPL D++ G +G+ L + WI S F L++ L Sbjct: 334 KQVFPLKAADLMPA--LSGPALGSALKEAETRWIRSGFTLTKAQLL 377 >gi|303255341|ref|ZP_07341411.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS455] gi|302597709|gb|EFL64785.1| tRNA CCA-pyrophosphorylase [Streptococcus pneumoniae BS455] Length = 394 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 100/398 (25%), Positives = 185/398 (46%), Gaps = 15/398 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L K + ++GG+VRD+L++ + D+DIAT+ P+ +IF +T Sbjct: 8 ALPVLEKLKKQALRLILLGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTA----DIG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ Sbjct: 64 IEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDET 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D GL DL + ++ +G A R ED LRI+R FRF A G ++ + A Sbjct: 124 GEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKT 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER + E +KLL A + M + + D+ S D+L+++ + Sbjct: 183 LTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDL 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E F ++ S + L+ + ++ S K + R+ + ++ + Sbjct: 241 ETDFTFE-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL-- 297 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 K+ Y + +++ + A + S IH KK + G + + Sbjct: 298 SKRDCYRFDIDLLLQAENLRQA---QGKEVNPQAITEKYQSLTIHDKKDIQINGGILIKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 YG PG +G IL + ++ + ++E +H LR+ Sbjct: 355 YGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLRE 392 >gi|125973904|ref|YP_001037814.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC 27405] gi|281418067|ref|ZP_06249087.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum JW20] gi|125714129|gb|ABN52621.1| metal dependent phosphohydrolase [Clostridium thermocellum ATCC 27405] gi|281409469|gb|EFB39727.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum JW20] gi|316939893|gb|ADU73927.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum DSM 1313] Length = 442 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 93/440 (21%), Positives = 170/440 (38%), Gaps = 56/440 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+ I+ LN K+ IVGG +RD+++ D D+AT P+ V IF K++ Sbjct: 11 KDVSYIIDTLNNRGFKAYIVGGCIRDAILGKVPADWDVATDAQPEDVKLIFD----KIVE 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 T I +GT+ + ++ITT R+ K D RDFTINA+ + Sbjct: 67 TGIKHGTVTAVINGCNYEITTFRA--------PSSAKIPTIKDDLGLRDFTINAMAYHPE 118 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID G+ D+ I+ +G R ED LR+LR R + G ID L A + Sbjct: 119 EGIIDPFLGMQDMEKSVIRAVGSPEDRFHEDPLRMLRAVRLSSTLG-FEIDRSVLSAIKE 177 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K ++ +S ERI E++K+L + P N + + G+ K + + + Sbjct: 178 NCKLIEKVSPERIRDELSKILISDRPKNFL-VLRETGLLKYVLPEFDICFDTGQNHPYHV 236 Query: 253 EQVFEWKIDS--------LLRFIVLISWQDKKSIL----------------------SMA 282 V +++ +LR+ +L+ K + + Sbjct: 237 YNVGMHTLETVSNIESNLVLRWTMLLHDIGKPVVKTTDQNGTDHFYGHPEESVNIADKIM 296 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 K+ + ++ + + + ++K + G + LK+ A Sbjct: 297 KRLRFDNKTTNKVLRLIKHHDRRIEPNQKSVRKAVSIIGKDIFPDLLKVQEADKK-GQNP 355 Query: 343 QDTCFILQVLSDIIHW-----------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 Q L+VL +I L G+D++ G +++G IL Sbjct: 356 QYLDERLKVLDEIKDIFFNLEKEGQILNLKDLALNGNDLLAMGFEQSREIGIILRELYNI 415 Query: 392 WINSSFQLSQEDLHHLLRKL 411 +++ ++E L ++ + Sbjct: 416 VLDNPEMNTKEKLTEIVENI 435 >gi|88607181|ref|YP_505747.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Anaplasma phagocytophilum HZ] gi|88598244|gb|ABD43714.1| polyA polymerase/tRNA nucleotidyltransferase family protein [Anaplasma phagocytophilum HZ] Length = 409 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 118/414 (28%), Positives = 196/414 (47%), Gaps = 19/414 (4%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K ++ + I+ +L +VGG VRDS++ DID+AT +LP V+ Sbjct: 4 KLIDNAGVQRIIRVLESFNGSVRLVGGCVRDSIIQRETTDIDLATDLLPKTVLTSLKAAG 63 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 K IPT + +GT+ + ++ITTLR D DGR+A VVFT +W+AD+ RRDFT NAL Sbjct: 64 IKAIPTGMQHGTVTAVVAGVPYEITTLRLDTKCDGRHASVVFTDNWEADASRRDFTFNAL 123 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDG 186 Y D+ GK+ DY G+ DL++RT+ FIGDA RI ED+LRILR FRF A + + + Sbjct: 124 YCDKNGKIYDYFTGIRDLQSRTVAFIGDAEQRINEDFLRILRVFRFHASICSDSALSEEI 183 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 + K + L +LS ERI SE KLL +N + + M I +I + + Sbjct: 184 INVCSKHARKLALLSKERIRSEFFKLLACRNCVGTLHIMERCDILAQIIPYHINVGVLSS 243 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-----KSILSMAKKFSLPREIRYFLISFFNC 301 Q+ + + L+ ++ + ++ L R+ + + Sbjct: 244 PQIATR--------SPIAKLAALLHTENPAYSVVEIAQNLTAALRLSRKEKNL-LETLLL 294 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + L++ + +K G ++ L I +L +L + L+ + Sbjct: 295 TKLELPLTVAQQQKYMNTLGTEIYKD-LVIINSLKSASLP---ESILHAHLASSEDFTPV 350 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 P++G D+++ G P G+ +G L + W +S++ L ++L+ Sbjct: 351 TLPISGKDLIQLGYPTGRVLGQTLRTLQTMWEEDIRNVSRDQLLTTAKRLLEEK 404 >gi|256005025|ref|ZP_05429996.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum DSM 2360] gi|255990993|gb|EEU01104.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Clostridium thermocellum DSM 2360] Length = 451 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 93/440 (21%), Positives = 170/440 (38%), Gaps = 56/440 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+ I+ LN K+ IVGG +RD+++ D D+AT P+ V IF K++ Sbjct: 11 KDVSYIIDTLNNRGFKAYIVGGCIRDAILGKVPADWDVATDAQPEDVKLIFD----KIVE 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 T I +GT+ + ++ITT R+ K D RDFTINA+ + Sbjct: 67 TGIKHGTVTAVINGCNYEITTFRA--------PSSAKIPTIKDDLGLRDFTINAMAYHPE 118 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID G+ D+ I+ +G R ED LR+LR R + G ID L A + Sbjct: 119 EGIIDPFLGMQDMEKSVIRAVGSPEDRFHEDPLRMLRAVRLSSTLG-FEIDRSVLSAIKE 177 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K ++ +S ERI E++K+L + P N + + G+ K + + + Sbjct: 178 NCKLIEKVSPERIRDELSKILISDRPKNFL-VLRETGLLKYVLPEFDICFDTGQNHPYHV 236 Query: 253 EQVFEWKIDS--------LLRFIVLISWQDKKSIL----------------------SMA 282 V +++ +LR+ +L+ K + + Sbjct: 237 YNVGMHTLETVSNIESNLVLRWTMLLHDIGKPVVKTTDQNGTDHFYGHPEESVNIADKIM 296 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 K+ + ++ + + + ++K + G + LK+ A Sbjct: 297 KRLRFDNKTTNKVLRLIKHHDRRIEPNQKSVRKAVSIIGKDIFPDLLKVQEADKK-GQNP 355 Query: 343 QDTCFILQVLSDIIHW-----------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 Q L+VL +I L G+D++ G +++G IL Sbjct: 356 QYLDERLKVLDEIKDIFFNLEKEGQILNLKDLALNGNDLLAMGFEQSREIGIILRELYNI 415 Query: 392 WINSSFQLSQEDLHHLLRKL 411 +++ ++E L ++ + Sbjct: 416 VLDNPEMNTKEKLTEIVENI 435 >gi|67458411|ref|YP_246035.1| Poly(A) polymerase [Rickettsia felis URRWXCal2] gi|67003944|gb|AAY60870.1| Poly(A) polymerase [Rickettsia felis URRWXCal2] Length = 385 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 135/394 (34%), Positives = 199/394 (50%), Gaps = 25/394 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ILSLLN+ + ++GG VRD+L+ DIDIAT + PD V+ I SK + K IPT + Sbjct: 16 KKILSLLNEKGH-ARLIGGCVRDALLEKDSYDIDIATNLTPDEVINILSKAKIKTIPTGL 74 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGK 134 +GTI I ++ F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL + + Sbjct: 75 KFGTITAILNEEKFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNE 134 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + DY G DL+ + FIG+A RI EDYLRILRFFRF ++Y + D A K Sbjct: 135 IYDYFEGFKDLQQEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQLNDG-SFKACKALK 193 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 GLK LS ERI SE++K++ +K + M + GI + IF +Q + Q E E Sbjct: 194 DGLKTLSRERIKSEMDKIIVSKKAAQILEAMSHIGILELIF-SIQNYEIKFFEQSKELEL 252 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 ++L + ++ S L + KFS ++ I F + I K Sbjct: 253 ATN-------YALLLYNLKNINSKLLLDWKFSRQEAMQILSILNFLNDSKDSMKKIWFEK 305 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 K + Y + A L H + ++ +P F + G+D++ Sbjct: 306 KNYKEY----------LLAACKIGKLNHSQVKEFIYKYDVLL---RPKFQVNGNDLLNMN 352 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 I K++G L + K WI F+ S+ +L L Sbjct: 353 IEK-KEIGTKLEYLKNFWIEQDFKPSKLELLEKL 385 >gi|116514260|ref|YP_813166.1| tRNA CCA-pyrophosphorylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275008|sp|Q049Z4|CCA_LACDB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116093575|gb|ABJ58728.1| tRNA nucleotidyltransferase/poly(A) polymerase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 396 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 103/398 (25%), Positives = 175/398 (43%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L + ++ VGG VRD L+ + D+DIAT+ P+ V F+K+ I T Sbjct: 13 AMPVLEKLEEAGFEAYFVGGCVRDLLLERPIHDVDIATSAYPEEVKETFAKS----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT R++ D R KV F ++ D RRDFTINAL ++Q Sbjct: 69 ILHGTVTVLYGGSSYEITTFRTESGYQDFRRPDKVTFVQNLDEDLKRRDFTINALAMNRQ 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL+ R IK +G A R ED LR++R RF + +++ A I Sbjct: 129 GEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALRMMRAVRFMSQL-SFSLEEKTRQAIIN 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E KL K+ A G+ +E DQLS + + Sbjct: 188 NHELLSKISVERIREEFVKLALGKDSRQAFKDFLATGLSEEC--PGLAGKKDQLSVLTDL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + VLI+ K + K + + +++ F+ + Sbjct: 246 KAGPDDEAVFWSLIAVLINLPADKISPFMRAWKNSNAMNQQVRQIVAAFDLLSRGEESDF 305 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + G + + A LK+ L + +L + + + G + Sbjct: 306 D-----LFEIGQENLEAALKLAGLLG----KPLSSQVLLDRYNRLPIKAAGELAIDGQWL 356 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K GI P ++G +L + ++ + SQ + L Sbjct: 357 IKEGIKPSPELGQLLRKALEGVVSGQVENSQAAIAEFL 394 >gi|160944761|ref|ZP_02091988.1| hypothetical protein FAEPRAM212_02276 [Faecalibacterium prausnitzii M21/2] gi|158443945|gb|EDP20949.1| hypothetical protein FAEPRAM212_02276 [Faecalibacterium prausnitzii M21/2] Length = 444 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 99/425 (23%), Positives = 175/425 (41%), Gaps = 54/425 (12%) Query: 35 AVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTL 94 VRDSL+ + D D+ T+ LP +VM +F + IPT + +GT+ I + ++ TT Sbjct: 29 CVRDSLLGRTAHDWDLCTSALPQQVMELFGTE--QCIPTGLQHGTVTIKYGGQLYETTTF 86 Query: 95 RSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKF 152 R++ TDGR+ V F D + D RRDFTINA+ + ++D GG DL+N ++ Sbjct: 87 RTEGSYTDGRHPDAVQFVPDVREDLARRDFTINAMAYNAAEGLVDPFGGQKDLQNGLLRA 146 Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL 212 +G+ R ED LRILR +RF A +G +D+ A+ + L +S+ERI E+ KL Sbjct: 147 VGEPQQRFTEDALRILRLYRFAARFG-FTLDAATARAARQLAPHLDCISAERIQEELAKL 205 Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272 L A P + + + ++ +L+ V++A + + +R+ L+ Sbjct: 206 LVAPQPGAYL----EPAVLAVVLPELTPAALEAAKPVVDA--CPAGEENLPVRWAALLGT 259 Query: 273 QDKKSILSMAKKFSLPREIRYFLI-------------SFFNCNFNQKTLSIP-------- 311 + + K+ SF + + +++ P Sbjct: 260 LGEADTRRVLKRLRCSNACIEETAVLVRETAGEGVCGSFLLGHESGHSIARPTACGSRVP 319 Query: 312 --------------------EIKKLFYLYGDKVMIAKLKIFLALH--YNNLTHQDTCFIL 349 +++L YG + + AL Sbjct: 320 PQRTVLGETPAHAPERASDIHLRRLLGRYGLCTVERLCALCAALRPQAAPACALAAQRAR 379 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 Q+ +D + + + G D++ GIP G + +L I + + + L + Sbjct: 380 QLEADGVCCRVRQLAVNGRDLMAAGIPAGPALRRVLEALLDGVIRAEYPNEKPALLAAAQ 439 Query: 410 KLIAS 414 K+IAS Sbjct: 440 KIIAS 444 >gi|296126066|ref|YP_003633318.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Brachyspira murdochii DSM 12563] gi|296017882|gb|ADG71119.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Brachyspira murdochii DSM 12563] Length = 464 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 101/452 (22%), Positives = 185/452 (40%), Gaps = 56/452 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I +L+ + +VGGAVRD++M ++ + DI T P+ V RIF T +PT Sbjct: 12 IKEIARILHIEGFQCFLVGGAVRDAVMGITPHEYDITTDAKPEDVQRIFKYT----VPTG 67 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-Q 131 I +GTI +I + +ITT RSD +DGR+ V + + D RRD TINA+ + Sbjct: 68 IKHGTILVIIEDMHVEITTFRSDGNYSDGRHPDNVEYASSIEDDLPRRDLTINAMAYNVL 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID G+ D++ + +K +GD + R ED LRI+R RF A I+ + A Sbjct: 128 DGTLIDMFDGMKDIKRKIVKSVGDPYERFREDGLRIMRAIRFAAKLN-FEIEKETFEAIT 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------IS 242 + L +++ERI E N +L + NP + + G+ I ++ + Sbjct: 187 HSTGMLASIAAERIREEFNGILLSSNPFRGLELLRKTGVLSLILPELMQGYGVAQNKFHK 246 Query: 243 LDQLSQVIEAEQVFEW----KIDSLLRFIVLISWQDK----------------------- 275 D ++ Q E ++ L+R L K Sbjct: 247 YDVYYHILHTIQSVEPLETEELTLLVRLAALFHDIAKPMVQKKVSKQDDPVYYNHEVVGA 306 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 K ++ K+ F+ + Q + +++ G + + L++ Sbjct: 307 KVAKNVMKRLKYSNSEIDFVTLLVRQHMFYYQDEWTDGAVRRFMRAIGVENIKPLLRLRE 366 Query: 334 ALHYNNLTHQDT---------CFILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGN 383 A + +D I +++ + + G+D++ ++ + P +G Sbjct: 367 ADRLGSGHRKDKESKAIPKLLARIDKIIEEENAITVKDLKIDGNDLINEFHLKPSPLIGK 426 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 IL + ++ ++E L R + S+ Sbjct: 427 ILNYLLDLILDEPELNNREFLLEKTRNFLESN 458 >gi|260437796|ref|ZP_05791612.1| poly A polymerase [Butyrivibrio crossotus DSM 2876] gi|292809820|gb|EFF69025.1| poly A polymerase [Butyrivibrio crossotus DSM 2876] Length = 404 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 97/401 (24%), Positives = 182/401 (45%), Gaps = 19/401 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+ I++ L + ++ VGG VRDS++ D DI T+ P V ++F +T + Sbjct: 7 EDVDYIITRLTEYGYEAYAVGGCVRDSIICRVPGDWDITTSAKPWEVKKLFRRT----VD 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + +++TT R D D R+ K V FT + D RRDFTINA+ + Sbjct: 63 TGIEHGTVTVMMGNEGYEVTTYRIDGEYEDSRHPKNVEFTSNLGEDLKRRDFTINAMAYN 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++D G D+ + I+ +G+ R ED LR+LR RF A G I + A Sbjct: 123 YSQGIVDMFDGKGDIERKIIRCVGNPEERFTEDALRMLRAVRFSAQLG-YEIAEETADAV 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K + +S ERI +E+NK+L + +P + M GI + +F + ++ + + + Sbjct: 182 KKLAGTISKISKERIHTELNKILLSDHPDYLMKAM-ELGITEIVFSALNDLPDKETAMKL 240 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + R+ ++ KK +++ ++ L + + + T Sbjct: 241 ----LIRLPKELVYRYGAVLFELGKKRTVAVLRELKLDNNTIDNTGRLVDMHGMEITEDK 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNN-------LTHQDTCFILQVLSDIIHWKKPLF 363 P I+ G + L+ + + ++L + Sbjct: 297 PLIRHQASSCGAAMYEMVLRFEYEFYMAADDRNKAMALKKQEALFKEILENGDCLTLKEL 356 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 +TG+D+++ GI PGK++GNIL + +N+ +++ L Sbjct: 357 AVTGNDLIEAGIHPGKEIGNILKSMLDDVLNTPEHNTKKYL 397 >gi|310642529|ref|YP_003947287.1| polynucleotide adenylyltransferase region [Paenibacillus polymyxa SC2] gi|309247479|gb|ADO57046.1| Polynucleotide adenylyltransferase region [Paenibacillus polymyxa SC2] Length = 440 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 88/432 (20%), Positives = 184/432 (42%), Gaps = 45/432 (10%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L ++ VGG VRD L+ ++ D+D+ T+ P+ V+ +F VIPT I Sbjct: 19 DVIHTLTTAGHEAYWVGGCVRDELLGRAIHDMDLTTSAEPEEVLALFP----HVIPTGIQ 74 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ F++TT R++ TD R +V F +D + D +RRDFT+NA+ + G+ Sbjct: 75 HGTVTVMQDGHAFEVTTFRTESGYTDHRRPTEVSFVKDIREDLMRRDFTMNAIAMAEHGE 134 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GG DLR ++ +G A R ED LR+LR RF + + + + I+ + Sbjct: 135 RVDPFGGEADLRAALVRCVGRAEERFEEDGLRMLRCIRFASVF-RFRVAYNTWKGMIRRR 193 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF--KEIFLDVQEISLDQLSQVIEA 252 +GL+ ++ ER+ E+ K+L +PL + + G+ ++ + ++ L ++++ Sbjct: 194 EGLRHIAMERVRVELEKMLAGPDPLRGLEMLGRSGLLGCTKVPVPWEQCDAQALKEILQL 253 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP- 311 W +++ ++ + + ++ +R L+ + ++ Sbjct: 254 PAELRWG------LLLMSCRLSSEAADELLRAWTFSNAVRLRLVHLLEWETELISHAVAI 307 Query: 312 -------------------EIKKLFYLYGDKVMIAKLKI--FLALHYNNLTHQDTCFILQ 350 +L G L++ L + L + + Sbjct: 308 ADNSISRDSDPINDEVLRRNWIRLLIKLGKDTASDWLELHKTLPSSFRGLPPWVEKHVKK 367 Query: 351 VLSDIIHW-------KKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + W + +TG+++V P G +G ++ Q E Sbjct: 368 IAELANSWTQQAVVVRIKDLNITGNELVQAMNRPGGPWLGQMMERLLQAVACGDIPNETE 427 Query: 403 DLHHLLRKLIAS 414 L ++++++S Sbjct: 428 TLLQEVKRVMSS 439 >gi|319651319|ref|ZP_08005449.1| hypothetical protein HMPREF1013_02061 [Bacillus sp. 2_A_57_CT2] gi|317397099|gb|EFV77807.1| hypothetical protein HMPREF1013_02061 [Bacillus sp. 2_A_57_CT2] Length = 402 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 97/398 (24%), Positives = 180/398 (45%), Gaps = 17/398 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + ++ VGG+VRD ++ + D+DIAT+ P+ V IF +T + Sbjct: 8 AVPVLENIEAAGYEAYFVGGSVRDFILGKEIADVDIATSAAPEEVKTIFPRT----LDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ ++ITT RS+ D R KV F R K D RRDFT+NA+ D++ Sbjct: 64 IEHGTVVVLHNGIPYEITTFRSEAEYLDFRRPSKVQFIRSLKEDLKRRDFTMNAIAMDKK 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID G + + I +G R ED LR++R RF++ I+ + A Sbjct: 124 GHLIDPFNGRGAIEEKRICTVGQPAERFTEDALRMMRAVRFYSQLA-FEIEKNTYDALAS 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ER +E KLL + + A++ + G+ K + ++ + + E Sbjct: 183 LAHLLENIAVERKLAEFEKLLAGTSRMKALMIIGETGLSKYL-PNMSGFQKELMQA--ED 239 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP 311 E +D + F+ I D+ + K + LP ++I+ L + K + Sbjct: 240 YNAAELTVDEMWAFLACIFNLDESQAEAFFKSWKLPVKKIKKILAINKWIRYRAKNMWDA 299 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 Y G + A+ + + +H ++ D ++ + + ++ LTGD+++ Sbjct: 300 ---YSLYQAGCVSLNAERVLNVIVHEDSSRGTDI--LVSKYNCLPIKERSDLQLTGDNLM 354 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G PPG + IL ++ + S E + L Sbjct: 355 DWFGKPPGPWIKAILEKTEEAVLRGELNNSNESIREWL 392 >gi|162449360|ref|YP_001611727.1| hypothetical protein sce1090 [Sorangium cellulosum 'So ce 56'] gi|161159942|emb|CAN91247.1| cca [Sorangium cellulosum 'So ce 56'] Length = 460 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 108/452 (23%), Positives = 187/452 (41%), Gaps = 54/452 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D++ I L + + IVGG VRD L +D D+AT P+ V+ F KVIP Sbjct: 13 EDVLGICRRLRERGKRGWIVGGCVRDLLRGQDAKDWDVATDARPEEVVAAFR----KVIP 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ R +++TTLR D +DGR +V F D AD RRDFT+NA+ D Sbjct: 69 TGIQHGTVTVLVRGVPYEVTTLRGDGTYSDGRRPDRVEFVDDITADLARRDFTMNAIAID 128 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY-GEKNIDSDGLV 188 G +ID GG +DL + I+ +GD R ED LR+LR RF A G + +++ + Sbjct: 129 PVDGHLIDPFGGRSDLEAKIIRAVGDPGERFAEDGLRVLRAARFAATLEGTLDPETERAM 188 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD-VQEISLDQLS 247 + ++ + + +S+ER+ E K + A+ P A M + + ++ + +Q Sbjct: 189 GTARSHQTFRCVSAERVRDEWLKAMRARRPSVAFEIMRRTELLAITCPEMIESVGCEQ-- 246 Query: 248 QVIEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSMAK---------------- 283 A V+ K + +LR L+ K ++ Sbjct: 247 NRWHAYDVWGHAMACLDACKPEPILRVAALMHDIGKPRTREFSEKTKDYTFYEHERVGAE 306 Query: 284 -------KFSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFL- 333 + + R +++ + T + +++ + +I + Sbjct: 307 MADPILTRLRFSNDERARIVALIRHHLICYDDTWTDAAVRRWLRRVTPALAPDLYEIGVA 366 Query: 334 -ALHYNNLTHQDTCFILQVLSDIIHWKKPL-------FPLTGDDVVK-YGIPPGKKVGNI 384 AL +D I ++ + + G+ ++K GIPP + VG + Sbjct: 367 DALGKGREATEDIATIGRLRERVDALLAAGAALSAKDLAVNGNRLMKELGIPPSRLVGEL 426 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 L + + E L R+L+AS Sbjct: 427 LERLVELVTEEPEANTPERLLAAARELVASKS 458 >gi|220925023|ref|YP_002500325.1| polynucleotide adenylyltransferase region [Methylobacterium nodulans ORS 2060] gi|219949630|gb|ACL60022.1| Polynucleotide adenylyltransferase region [Methylobacterium nodulans ORS 2060] Length = 417 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 197/380 (51%), Gaps = 13/380 (3%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 L +L+ L +++ +VGGAVRD+L+ V D+D+ATT+LP+ V+R+ +K Sbjct: 11 AALLARPRLRRVLAALEAPGEETRLVGGAVRDALLGRRVADVDLATTLLPEEVVRLAAKA 70 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 K +PT I +GT+ ++ + F++TTLR D+ TDGR+A V F RD+ D+ RRDFTINA Sbjct: 71 GLKPVPTGIDHGTVTVVAEGEPFEVTTLREDIETDGRHAVVRFGRDFARDAERRDFTINA 130 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 L AD G++ D VGG DL + ++FIG A RI EDYLR+LRFFRF A YG +D +G Sbjct: 131 LSADPAGRLHDTVGGAADLASGRVRFIGAAAQRIREDYLRVLRFFRFHARYGRGALDPEG 190 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L ASI A++GL LS ER+ E+ KLL A A + G+ + + + ++ +L Sbjct: 191 LAASIAAREGLATLSRERVRVELLKLLAAPGAAQATAILSGTGLLQRLIGGIGDLG--RL 248 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL----ISFFNCN 302 +++ +E V D L R L + + L + L + + Sbjct: 249 ARLAASEAV----PDPLRRLAAL-AVLSGPDADRLRDALRLSKAEHARLAAYAEASAALH 303 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 Q + + EI++ L G + + + + LT + + S P Sbjct: 304 GAQAPVDVAEIRRRVALSGVQAVSDAILVLTGEPTPVLTEEAARALAAFASGAE--PVPA 361 Query: 363 FPLTGDDVVKYGIPPGKKVG 382 P++G +V G PG +G Sbjct: 362 LPISGALLVSRGAKPGPSLG 381 >gi|157803201|ref|YP_001491750.1| poly(A) polymerase [Rickettsia canadensis str. McKiel] gi|157784464|gb|ABV72965.1| poly(A) polymerase [Rickettsia canadensis str. McKiel] Length = 403 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 135/399 (33%), Positives = 214/399 (53%), Gaps = 29/399 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ILSLLN+ ++ ++GG VRD+L+ DIDI TT++P V+ I S+ + K IPT + Sbjct: 16 KKILSLLNEKG-QARLIGGCVRDALLKKDSYDIDIDTTLIPSEVINILSRAKIKTIPTGL 74 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGK 134 +GTI I K+ F+ITTLR D+ +GR+AK+VFT D+ D+ RRDFTINAL + K Sbjct: 75 KFGTITAILDKEKFEITTLRKDIECNGRHAKLVFTNDFAEDAARRDFTINALSYCPFKNK 134 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + DY G DL+ + FIG+A +RI EDYLRILRFFRF ++Y + +D +GL A K Sbjct: 135 IYDYFDGFKDLQQEKVVFIGEALNRIKEDYLRILRFFRFSSYYANQ-LDHEGLKACKVLK 193 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 GLK LS ERI SE+NK++ +K + M+ GI + IF +Q + EQ Sbjct: 194 YGLKTLSRERIKSEMNKIIVSKRAAQILEAMFEIGILELIF-SIQNYKIKFF------EQ 246 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILS-MAKKFSLPREIRYFLISFF--NCNFNQKTLSIP 311 ++K++ R+ +L+ Q ++ + KFS ++ I+ F + N K + + Sbjct: 247 ANDFKLELATRYALLLYNQKDLNLKVFLDWKFSKYEAMQILSITNFLNDTECNMKKIWLE 306 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + YL L + + D + + + +P F + G++++ Sbjct: 307 KNNYKEYL---------------LAASIIGKLDYLQVKEFIRKYDAVLRPKFQVNGNNLL 351 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 I K++G L + K WI F+ S+ +L ++ + Sbjct: 352 NMNIEK-KEIGAKLEYLKNFWIEHDFKPSKLELLRVISR 389 >gi|332686557|ref|YP_004456331.1| tRNA nucleotidyltransferase [Melissococcus plutonius ATCC 35311] gi|332370566|dbj|BAK21522.1| tRNA nucleotidyltransferase [Melissococcus plutonius ATCC 35311] Length = 410 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 100/404 (24%), Positives = 179/404 (44%), Gaps = 26/404 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + I+ + KG ++ VGG+VRD L+N + D+DIA++ P+ + ++F +T I Sbjct: 12 EATPIIKKIQKGGYEAYFVGGSVRDVLLNKPIHDVDIASSAYPEEIKQLFRRT----IDV 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ K ++ITT R++ D R V F R D RRDFTINAL D+ Sbjct: 68 GIEHGTVLVLHGSKQYEITTFRTESTYQDFRRPDTVTFVRSLSEDLKRRDFTINALALDR 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+VID G++D+ N+ I+ +GD R ED LR++R RF + + I+ L Sbjct: 128 SGQVIDQFDGISDIENKVIRAVGDPKARFHEDALRMMRALRFASQL-DFQIEEKTLAGIS 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-----ISLDQL 246 L+ +S ERI E K+L KN + ++ +++ ++ +L Sbjct: 187 AFHFLLEKVSVERITIEFVKMLLGKNRKAGLYPFIQTECYQYC-PCLKQAGEALLNFSEL 245 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 AE+ W + LL + L K++ L K + L + + + Sbjct: 246 PNQQIAEESEAWTL--LLHSLNLT----KEAALVFLKSWKLSNHLIQEVCQLSKGLNFR- 298 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 L ++ Y G + + K+ + H + Q + + + +T Sbjct: 299 -LKKAFSIEMLYELGLEKALIVEKLLIYYH----KESQPELVKQQFAQLPIHNRKQLAIT 353 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G D++ GK VG +L + + ++ + E+L + Sbjct: 354 GKDLLNITNGKSGKWVGELLSLIESQVLHGDLINTTEELISYAK 397 >gi|229829762|ref|ZP_04455831.1| hypothetical protein GCWU000342_01859 [Shuttleworthia satelles DSM 14600] gi|229791751|gb|EEP27865.1| hypothetical protein GCWU000342_01859 [Shuttleworthia satelles DSM 14600] Length = 461 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 91/437 (20%), Positives = 175/437 (40%), Gaps = 48/437 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ L ++ VGG VRDS++ D DI ++ P + +FS T I T I + Sbjct: 18 IIHTLEAAGHEAYAVGGCVRDSVLGRIPDDWDITSSACPREIKALFSHT----IDTGIQH 73 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ +++TT R D DGR+ + V +T D RRDFTINA+ + Sbjct: 74 GTVTVMLDHIGYELTTYRVDGEYLDGRHPRTVRYTPSLTEDLKRRDFTINAMAYHPDRGL 133 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G+ DL+ + ++ +GD H R ED LR+LR RF A G +D+D A + Sbjct: 134 VDEFDGIGDLKRKLVRCVGDPHQRFTEDALRMLRAVRFAAQLG-FGLDADTASAIRDLAE 192 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LK +S+ERI E+ K + + +P + Y G+ + + V Sbjct: 193 NLKKVSAERIRVELMKTICSPHP-ACLEMAYELGLTAVFLPEFDACMRTPQNTPHHFTDV 251 Query: 256 FEWKI--------DSLLRFIVLISW----------------------QDKKSILSMAKKF 285 + D +LR L+ + + + ++ Sbjct: 252 GHHTLLVMQGVPDDPVLRLAALLHDIAKPVCRTTDERGVDHFKGHPKEGARMAGEILRRL 311 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 ++ ++ + + + +++ G + + A ++ Sbjct: 312 RFDKDTTDRVVQLVCYHDERPGADLRSVRRAMVRVGAQAFPRLFALKRADMLAQSDYKRE 371 Query: 346 CFI------LQVLSDIIHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + ++ I+ K+ L ++G D+++ G+P G+ VG +L ++ + Sbjct: 372 EKLGEIDDFERLREQILQKKEALSVGDLAISGRDLLEMGLPQGRLVGEVLSALLEDVLEE 431 Query: 396 SFQLSQEDLHHLLRKLI 412 + L R+++ Sbjct: 432 PEHNQADYLRKKSREIL 448 >gi|328957360|ref|YP_004374746.1| tRNA CCA-pyrophosphorylase [Carnobacterium sp. 17-4] gi|328673684|gb|AEB29730.1| tRNA CCA-pyrophosphorylase [Carnobacterium sp. 17-4] Length = 401 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 101/399 (25%), Positives = 179/399 (44%), Gaps = 21/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ + + K+ VGG+VRD+L+N + D+DIAT+ P+ + IF KT I Sbjct: 11 ALPIIDKIEEAGFKAYFVGGSVRDTLLNKPINDVDIATSAKPNEIKGIFPKT----IDVG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R K D RRDFTINAL ++ Sbjct: 67 IEHGTVMVLWKDASYEITTFRTESTYQDFRRPDTVEFVRSLKEDLKRRDFTINALAMNRD 126 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++IDY G DL N+ IK +G R ED LR++R RF + N+DS+ A K Sbjct: 127 GEIIDYFNGQKDLENKLIKAVGIPEERFFEDALRMMRGVRFVSQLN-FNMDSETEAAIQK 185 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK ++ ERI E KLL + +F ++ S +L + Sbjct: 186 NHPLLKKIAIERIQVEFVKLLLGSGRKQGLGLFIRTNLFYYC-PGLKG-SKKELEAFAKL 243 Query: 253 EQVFEWKIDSLLRFIVLISWQDK--KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E V E + ++ + +LI K + + + ++ + ++ L Sbjct: 244 ECVIE---NRIVAWTLLIHHLKKTSDDVEPFLRAWKCSKKEINQVKLAMIALEHR--LKD 298 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 +++ Y G ++ + + L Y + + + ++ + K + GDD+ Sbjct: 299 DFNRQVLYQVGLQIALDVETVMDCLGY----PINFESVQMMYQELPIYSKHDLEVDGDDL 354 Query: 371 -VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 V PGK +GN++ + ++ + + + Sbjct: 355 QVVLNRKPGKWLGNLITEIETTILSGELANEKSVIVEWI 393 >gi|315641225|ref|ZP_07896302.1| poly A polymerase [Enterococcus italicus DSM 15952] gi|315482992|gb|EFU73511.1| poly A polymerase [Enterococcus italicus DSM 15952] Length = 406 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 94/403 (23%), Positives = 184/403 (45%), Gaps = 16/403 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + +L + ++ VGG VRD L++ S+ D+DIAT+ P + +FS+T I Sbjct: 12 NAQPVLQKIQAAGFEAYFVGGCVRDVLLHQSIHDVDIATSAYPSEIKELFSRT----IDI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ ++ ++ +++TT R++ D R +V F R D RRDFT+NAL + Sbjct: 68 GIEHGTVLVLWHEEQYEVTTFRTESTYQDFRRPDQVTFVRSLAEDLKRRDFTMNALALAE 127 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GL+D+ + ++ +GDA+ R ED LR++R RF + + + D L A Sbjct: 128 NGTIIDLFNGLSDINQKVVRAVGDANERFHEDALRMMRGLRFISQL-DFTMAPDTLAAIE 186 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K + L +S ERI E KL+ + A+ F ++ E ++ L + IE Sbjct: 187 KHSQLLSFISIERIRIEWEKLVLGRARNRALRLFLATNCF--LYCPQFEQQIEGLQKFIE 244 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + ++++ ++ ++ ++ K++ L + + + +K Sbjct: 245 LPEKQLTEVEAAWTLLMDCLDVPERQFVAFFKEWKLSNDTIKQIQKTYQGLQFRKHFPWN 304 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + + Y G +V+ L++ L Y N Q I +++ + + G D+ Sbjct: 305 --RWMVYTLGAEVV---LRVESLLAYYN-PEQSFVAIEELVQLLPIESLKDLQVNGHDLQ 358 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + PGK + + L +++ + + + +L +A Sbjct: 359 HTFQKKPGKWLSDTLHFLEKQVVEGAVANQKVELLQAAENYLA 401 >gi|126654221|ref|ZP_01726017.1| tRNA nucleotidyltransferase [Bacillus sp. B14905] gi|126589303|gb|EAZ83459.1| tRNA nucleotidyltransferase [Bacillus sp. B14905] Length = 392 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 102/398 (25%), Positives = 177/398 (44%), Gaps = 25/398 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++ L + ++ IVGGAVRD+L+N D+D+AT LP+ V +F +T + Sbjct: 10 AYSVIEQLEQAGFEAVIVGGAVRDALLNRPAHDVDVATNALPEEVKTVFQRT----VDIG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I ++TT R+D TD R KV F R + D RRDFT+NA+ + Sbjct: 66 IQHGTVLVIVPAGPVEVTTYRTDGEYTDHRRPDKVQFVRSLQDDLQRRDFTMNAIAMRRD 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +DY GG D+ R I+ +GDA R ED LR+LR RF A + I D L+A Sbjct: 126 GSFVDYYGGRQDIDLRIIRAVGDAQKRFAEDALRMLRAIRFSAQL-DFTIAEDTLMAIQH 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + ++ ERI +E++KL + + + G+ + Q D+ + Sbjct: 185 RAADIAFIAKERIKAELDKLWLGTTVFSGLQKLEESGLAAYLQGSFQA---DRWYEFQTE 241 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 ++ W + L+ + + IL + + L + F+ S K+ Sbjct: 242 DKHVGWA------YFALLQGANWREIL---RDYRLSNKEMAFVKSVLTAYEALKSGWTNS 292 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 ++ Y ++ + A + L + + ILQ + +K + G D++K Sbjct: 293 ---HYFTYKEQELEAAIYFAKLLQADVCLPSEPIRILQ--DKLPIRQKQEIAVNGADLLK 347 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G G V L + I++ Q+ + L+ Sbjct: 348 WSGKKGGPWVKEALEDILEAIIHNELANDQQQIKKWLK 385 >gi|162149125|ref|YP_001603586.1| tRNA nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl 5] gi|161787702|emb|CAP57298.1| putative tRNA nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl 5] Length = 427 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 113/398 (28%), Positives = 189/398 (47%), Gaps = 24/398 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD L V D+D+AT PD+V+ KV+ T +++GT+ + + Sbjct: 43 RARLVGGVVRDLLAGRPVSDLDLATPEPPDQVLAALEAAGIKVVATGLAHGTVTAVIAGR 102 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++ITTLR D TDGR+A V +T DW D+ RRDFTINA+ + G V D GG DL Sbjct: 103 PYEITTLRRDERTDGRHAVVAWTDDWAEDAARRDFTINAMSCGRDGVVHDAFGGRADLEA 162 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--SDGLVASIKAKKGLKILSSERI 205 ++F+GD RI ED LR+LRFFRF A YG+ D + +A A L LS+ER+ Sbjct: 163 GHVRFVGDPATRIREDALRVLRFFRFHARYGQGTPDAAAMAAIADAAAAGALSRLSAERV 222 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 WSE+ ++L + ++ M G+ + + + L L++++ A D++L Sbjct: 223 WSELRRILSGPAVMESLGLMERTGVLARLLPEGYD--LPALARLVAA----GAPPDAILF 276 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFF--------NCNFNQKTLSIPEIKKLF 317 VL +A + L R L S + + +++ Sbjct: 277 LGVLARATPGL----LAARLRLSRAEAASLASLGVTADSAAPDPEVPEPGADDDARRRML 332 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 ++++ + A + + +D++ +P+FPL G DVV G+ Sbjct: 333 ANEAAEILVRRSWRVQAERVG----APSAAWDGLRADLLARARPVFPLAGRDVVAAGVAA 388 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G +VG +L + W+ + + L +++A + Sbjct: 389 GPRVGAVLERVRDWWMAGGCRAGRRACMAQLERMVADT 426 >gi|332559679|ref|ZP_08414001.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides WS8N] gi|332277391|gb|EGJ22706.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides WS8N] Length = 380 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 121/403 (30%), Positives = 190/403 (47%), Gaps = 28/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + ++L + ++ VGG VR++L+ V DID+AT +P V + S Sbjct: 3 ISGDWLVQPATQRLCAVLTEAGHRALFVGGCVRNALLGRPVSDIDLATDAVPAAVSALAS 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG ++ + Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + + Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPAPSVASMECAGVLAVVLPGAEARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + E D LLR L +A + + Sbjct: 243 LPVLVHLEE-----GRAPDWLLRLASL-------GGAEVADRLR-----LSRADAAALAR 285 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + L+ + Y G ++ + + AL +T + + Sbjct: 286 LREAALAGAPPAEQGYRLGARLGAGAVLLRAAL-------TETPPPAGWEAAVERGAAAR 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+ D++ G +G L ++ WI S F+L + L Sbjct: 339 FPVAAADLMPA--LTGPALGARLRALEERWIASDFRLDRAALL 379 >gi|85373276|ref|YP_457338.1| tRNA nucleotidyltransferase [Erythrobacter litoralis HTCC2594] gi|84786359|gb|ABC62541.1| tRNA nucleotidyltransferase [Erythrobacter litoralis HTCC2594] Length = 395 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 130/410 (31%), Positives = 195/410 (47%), Gaps = 26/410 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + W DL +++ +L VGGAVRD+L+ +V+D+D AT +LP+ VM Sbjct: 5 LPSAPWTQRDDLASLVGVLGADN--LRWVGGAVRDTLLGDAVKDVDAATPLLPEDVMERL 62 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + + +PT I +GT+ I +ITTLR D+ TDGR A V F +W+ D+ RRDFT Sbjct: 63 AAADIRTVPTGIDHGTVTAILPGGPVEITTLRKDVSTDGRRATVAFAGEWRDDAARRDFT 122 Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INALYAD + + D+ GGL DL R ++FIGDA RI ED+LRILR+FRF A +G + Sbjct: 123 INALYADPKTLAISDFFGGLEDLEARRVRFIGDARERIREDHLRILRYFRFQARFGAELD 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + A + + LK LS ER+ E+ LL +P I M G+ I + + Sbjct: 183 -EEAEEACAELAETLKGLSRERVAMELLSLLALPDPAPTIARMRERGVLPVILSEAGKAE 241 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + +L +I +E + D L R L+ S+A + L R R L+S Sbjct: 242 VARLQALIASEARYSIAPDPLRRLAALLPPVATL-AESVAARLRLSRAQRDRLVSLAR-- 298 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 ++ + L Y G +L + A + + W P Sbjct: 299 --RQPEDETRARPLAYEEGLDNARDRLLLAGADP----------------APLQDWHVPQ 340 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 FPL G +V G+ G +V IL + W+ F + + LL + + Sbjct: 341 FPLKGGAIVARGVGAGPEVARILQGIEARWVEEGFPP-EARVAELLDEAL 389 >gi|209545131|ref|YP_002277360.1| polynucleotide adenylyltransferase region [Gluconacetobacter diazotrophicus PAl 5] gi|209532808|gb|ACI52745.1| Polynucleotide adenylyltransferase region [Gluconacetobacter diazotrophicus PAl 5] Length = 420 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 113/398 (28%), Positives = 189/398 (47%), Gaps = 24/398 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD L V D+D+AT PD+V+ KV+ T +++GT+ + + Sbjct: 36 RARLVGGVVRDLLAGRPVSDLDLATPEPPDQVLAALEAAGIKVVATGLAHGTVTAVIAGR 95 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 ++ITTLR D TDGR+A V +T DW D+ RRDFTINA+ + G V D GG DL Sbjct: 96 PYEITTLRRDERTDGRHAVVAWTDDWAEDAARRDFTINAMSCGRDGVVHDAFGGRADLEA 155 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID--SDGLVASIKAKKGLKILSSERI 205 ++F+GD RI ED LR+LRFFRF A YG+ D + +A A L LS+ER+ Sbjct: 156 GHVRFVGDPATRIREDALRVLRFFRFHARYGQGTPDAAAMAAIADAAAAGALSRLSAERV 215 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR 265 WSE+ ++L + ++ M G+ + + + L L++++ A D++L Sbjct: 216 WSELRRILSGPAVMESLGLMERTGVLARLLPEGYD--LPALARLVAA----GAPPDAILF 269 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFF--------NCNFNQKTLSIPEIKKLF 317 VL +A + L R L S + + +++ Sbjct: 270 LGVLARATPGL----LAARLRLSRAEAASLASLGVTADSAAPDPEVPEPGADDDARRRML 325 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 ++++ + A + + +D++ +P+FPL G DVV G+ Sbjct: 326 ANEAAEILVRRSWRVQAERVG----APSAAWDGLRADLLARARPVFPLAGRDVVAAGVAA 381 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G +VG +L + W+ + + L +++A + Sbjct: 382 GPRVGAVLERVRDWWMAGGCRAGRRACMAQLERMVADT 419 >gi|256826984|ref|YP_003150943.1| domain HDIG-containing protein [Cryptobacterium curtum DSM 15641] gi|256583127|gb|ACU94261.1| uncharacterized domain HDIG-containing protein [Cryptobacterium curtum DSM 15641] Length = 451 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 99/453 (21%), Positives = 180/453 (39%), Gaps = 56/453 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + I+ L + ++ +VGG VRD L+ + DIDIA++ +R+ Sbjct: 3 DTLMNPPVQRIIETLEQAGVEAWLVGGCVRDGLIGRPIHDIDIASSASWQETVRLCQAAG 62 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRD-WKADSLRRDFTIN 125 + T +GT+ II F++TT R + DGR+ + VF D D RRDFTIN Sbjct: 63 MTTVETGTQHGTVTIIADGTPFEVTTFRGEGQYQDGRHPEYVFPVDSIDEDLARRDFTIN 122 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ + + D GG D + I+ +G A R ED LRILR RF + G ++++ Sbjct: 123 AMAWNPSRGLHDPYGGQADAAAKIIRAVGKAQQRFDEDALRILRGARFASQLG-FTLETE 181 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--- 242 A +A L +S+ERI +E++ LL+ +A++ I + E+S Sbjct: 182 TAHAMNEAAHNLARISAERIAAEMDALLKGSFVHDALM-----NCAPVICAAIPELSCTC 236 Query: 243 -LDQLSQV--IEAEQVFEWKID-----SLLRFIVLISWQDKKSIL--------------- 279 DQ S+ + + W SL+R+ + K + + Sbjct: 237 GFDQQSKYHSFDVYEHLAWATQQTPKKSLVRWCAFLHDIGKPATMVVDEAGAGHFPDHAA 296 Query: 280 -------SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332 ++ K+ P + + + K++ + + Sbjct: 297 VGEAMARNLLKRLRFPTRFIHDACLLIRYHDIPIAPTPRATKRMLQRLDGRE--DLFRDL 354 Query: 333 LALHYNNLTHQDTCF-------------ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379 AL + + + ++ + + + G+DV+K G+P G Sbjct: 355 CALKRADSLAHAPQWRGGTKAADAAEKCLDAIIEQNAAFSRSALAINGNDVIKLGVPAGP 414 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 VG L I+ + + ++ L L+R+L+ Sbjct: 415 AVGKALDAALNAVIDETRRNERDSLLDLVRELM 447 >gi|332298006|ref|YP_004439928.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Treponema brennaborense DSM 12168] gi|332181109|gb|AEE16797.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Treponema brennaborense DSM 12168] Length = 469 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 101/465 (21%), Positives = 187/465 (40%), Gaps = 79/465 (16%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 +L + + ++ + +VGGAVRD + + D D+AT P +V +F +VIPT Sbjct: 9 ELQKMHEIFSEHGFSAYLVGGAVRDIVRGKTASDWDVATNATPQQVTDMFR----RVIPT 64 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD- 130 I++GT+ + K+ ++TT R++ +DGR+ V F + D RRDFT+NA+ A+ Sbjct: 65 GIAHGTVTVHFMKREVEVTTFRTETGYSDGRHPDSVKFAATIEDDLSRRDFTMNAIAANL 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G ++D GG +D++ I+ +G+A R ED LR +R RF A G +ID L A Sbjct: 125 ADGLIVDPFGGRDDIKANVIRTVGNADERFAEDGLRPIRALRFAAQLG-FSIDPATLAAV 183 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242 +AK+ +S ER E K+L+A P A+ M + G+ + ++ Sbjct: 184 PRAKEKTAGVSIERFRDEFVKMLKAPQPSLALRLMEDTGMLRLFLPELAACRGVEQADAR 243 Query: 243 -------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS--------------- 280 LD L + + + +R L K ++ Sbjct: 244 GFHRFDVLDHLLYACDGAPARKLE----VRLAALFHDAGKPAVKRTEIRERVSDRAGEPP 299 Query: 281 ---------------------MAKKFSLPREIRYFLISFFNCNFN--QKTLSIPEIKKLF 317 + ++ P + + + + + + +++ Sbjct: 300 PAETIYTFYNHETVSASITKNVLERLRFPNALTTAVCHLVKNHMFHYESSWTDAAVRRFL 359 Query: 318 YLYGDKVMIAKLKIFLALHY----------NNLTHQDTCFILQVLSDIIHWKKPL----F 363 + + + +A Y N + ++ + + I L Sbjct: 360 VRVTPQAVEDLFDLRIADVYGMTGVPPQLKNGVWSENLLELKDRIDAITAQNTALTLKDL 419 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G D+++ GIP GK++G+IL I+ Q +E L + Sbjct: 420 AVNGADLIRAGIPAGKRLGHILRELLDTVIDDPKQNDRETLLRIA 464 >gi|77464784|ref|YP_354288.1| Poly A polymerase family protein [Rhodobacter sphaeroides 2.4.1] gi|77389202|gb|ABA80387.1| Poly A polymerase family protein [Rhodobacter sphaeroides 2.4.1] Length = 380 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 120/403 (29%), Positives = 191/403 (47%), Gaps = 28/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + ++L + ++ VGG VR++L+ +V DID+AT +P V + + Sbjct: 3 ISGDWLVRPTTQRLCAVLTEAGHRALFVGGCVRNALLGRAVSDIDLATDAVPAAVSALAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG ++ + Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + + Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPARSVASMECAGVLAVVLPGAEARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + E D LLR L +A + + Sbjct: 243 LPVLVHLEE-----GRAPDWLLRLASL-------GGAEVADRLR-----LSRADAAALAR 285 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + L+ + Y G ++ + + AL +T + + Sbjct: 286 LREAALAGAPPAEQGYRLGARLGAGAVLLRAAL-------TETPPPAGWEAAVERGATAR 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+ D++ G +G L ++ WI S F+L + L Sbjct: 339 FPVAAADLMPA--LAGPALGARLRALEERWIASDFRLDRAALL 379 >gi|168334095|ref|ZP_02692308.1| putative poly(A) polymerase [Epulopiscium sp. 'N.t. morphotype B'] Length = 409 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 107/411 (26%), Positives = 192/411 (46%), Gaps = 18/411 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++I I++ L + +VGG VRD +M + D DI T+ LP + +IF +T Sbjct: 5 DEVIEIITELELAGFSAYVVGGCVRDMIMKRTPNDWDITTSALPADIKKIFERT----YD 60 Query: 73 TSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ +I K+++++TT R + + R V F + D RRDFT+NA+ Sbjct: 61 TGIAHGTVTVILNKEHYEVTTYRIEKEYVNFRRPNGVEFAENIAQDLSRRDFTMNAIAYH 120 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +D GG D+ N+ I+ +GDA R ED LRILR RF A I + A Sbjct: 121 PHKGFVDPYGGRKDIENKIIRAVGDAKIRFNEDALRILRAVRFAAQLN-FEIAEETKTAF 179 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQ 248 I ++ LK +S ERI E NK+ ++N L I+++Y I I +++++ +L+ + Sbjct: 180 IDKRELLKYISKERIRDEFNKICLSEN-LFFILNIYKWDILSYISGEIKKLFDNLETEQK 238 Query: 249 VIEAEQVFEWKIDSLL--RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 +++ +V +L+ +L D ++ + ++ + + + Sbjct: 239 LVQLLEVMAAMPVNLISRYTALLYPLNDSDAVKHILRELKFDNQTIKNVALAIEYYIYET 298 Query: 307 TLSIP--EIKKLFYLYGDKVMIAKLKI--FLALHYNNLTHQDTCFIL--QVLSDIIHWKK 360 I E+K+L + + L I A + + + F+L +L +K Sbjct: 299 NFKIDAVEMKRLLRICEVDNVRNILLIKKNKASTIEEIEYIEKLFLLIDHILEQKECYKI 358 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +TG+DV+K I GK++G L + + + + +L + L KL Sbjct: 359 KDLAITGNDVIKQNIASGKEIGKKLEQALEFILCFPHKNTNIELINYLMKL 409 >gi|228996750|ref|ZP_04156387.1| CCA-adding enzyme [Bacillus mycoides Rock3-17] gi|228763069|gb|EEM11979.1| CCA-adding enzyme [Bacillus mycoides Rock3-17] Length = 384 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 175/391 (44%), Gaps = 15/391 (3%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + + ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ Sbjct: 1 MKQHGHEAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVI 56 Query: 82 IICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 ++ +++TT R++ D R V F R + D RRDFT+NA+ +++G +ID Sbjct: 57 VVQEGIPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLF 116 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 G +R + I +G+A R ED LR++R RF + G ++ A + L+ Sbjct: 117 AGQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFF-LEEQTKRAIEEYGHLLEH 175 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 ++ ERI E KLL K +N + + + + +Q L + FE Sbjct: 176 IAIERITVEFEKLLTGKYCVNGLQQLVETKLVTHL-PYLQMSEERILKAMQYNWDFFETD 234 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 I++ F+ I + L +++ + +++ ++KT S + Y Sbjct: 235 IEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVILAIRSRKTKSWDAV--FLYK 289 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP-PG 378 G + +++ A+ + + + + ++G+D++ + PG Sbjct: 290 TGLHTALMAERVYQAIIK-KYDIFSVNQVQSLFDSLSIHNRQEMKVSGNDLLGWTEKTPG 348 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 V +L ++E + + +E + L+ Sbjct: 349 PWVAEVLQRIEEEILQERLENEKEKIREWLQ 379 >gi|304322137|ref|YP_003855780.1| putative poly(A) polymerase [Parvularcula bermudensis HTCC2503] gi|303301039|gb|ADM10638.1| possible poly(A) polymerase [Parvularcula bermudensis HTCC2503] Length = 398 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 129/412 (31%), Positives = 196/412 (47%), Gaps = 26/412 (6%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV-----QDIDIATTILPDRVMRI 62 W D +L++LN+ ++ VGG +RDSL+ DIDIATT+LP+ +++ Sbjct: 7 AWARSGDAAKLLAILNEEG-EARFVGGCIRDSLLGQPPGAAGHTDIDIATTLLPEETLKL 65 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + +VIPT + +GT+ + F+ITTLR D+ TDGR+A V FT DW+ D+ RRDF Sbjct: 66 LGRHGIRVIPTGLEHGTVTAVLSAVPFEITTLRCDVATDGRHATVSFTEDWEKDAARRDF 125 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 TINAL D++G++ DY G DL R ++FIG RI EDYLRILRF RF A +G + Sbjct: 126 TINALSLDKEGRLYDYHDGRADLMARRVRFIGRPAQRIKEDYLRILRFMRFSARFG-GTL 184 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D G AS GL LS ERIWSE+++L A + G I I +Q Sbjct: 185 DVAGWQASEALAGGLLHLSKERIWSEVSRLFCAAGAPTVLSEAAKGPILDAI---IQVAP 241 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 I A + E + L L + + S F P + ++ Sbjct: 242 DPVSFARIHAAR--EGAPSAGLCLAALWPTATRSMLQS---AFKPPTSVLAHALTLPEIA 296 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + P +++ + YG L + L+ I++ L+ P+ Sbjct: 297 KVWEAGATP--REVLFSYGRPAAEEGLALC------RLSAAAKAEIVRALTTA---PVPV 345 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P+ G D + G+ G VGN L + W ++F + L +++A+ Sbjct: 346 LPVRGADFIAAGLTAGPMVGNALKDFTERWAQANFPEDPAIVRSLFDEVMAA 397 >gi|299143658|ref|ZP_07036738.1| polyA polymerase family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518143|gb|EFI41882.1| polyA polymerase family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 440 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 111/435 (25%), Positives = 197/435 (45%), Gaps = 44/435 (10%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 +++ IL++LN IVGG++RD L++ D DIAT P + IF + I Sbjct: 4 EILEILNILNMRGHLGYIVGGSLRDMLLDRIPFDFDIATDAKPYEIEEIFEDYLFYSI-- 61 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 YGTI I + ++TT R + + + RY +V FT + + D RRDFTINA+ D Sbjct: 62 GKKYGTITIKYKDYIVELTTFRKEGIYENHRYPTEVFFTENIEEDLKRRDFTINAMAMDG 121 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID G++D+++R I+ +G+A RI ED LRILR RF + +D D A I Sbjct: 122 NGNIIDLYSGISDIKSRVIRTVGNADDRICEDALRILRAIRFAGTL-DFKLDCDLKDAII 180 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K + L +S ERI SE NK+L ++ P ++ M + + I+ + Sbjct: 181 KNRSLLNNISKERIASEFNKILLSEMPSKSLKLMADTKVLDIIYPKLYNTVGYNQKTPYH 240 Query: 252 AEQVFEWKIDSL--------LRFIVLISWQDKKSILSMAK-------------------- 283 + +FE + + LR L K S LS+ K Sbjct: 241 NKTLFEHLLCVVDNVPKNFELRLAALFHDIAKPSTLSVDKNGIGHFYGHAELGAKMAEEI 300 Query: 284 ----KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 ++S + + ++ + ++ +++ G + ++ ++ +A + Sbjct: 301 LRENRYSNSTIKKVSTLILYHMKVH-DNMTDKALRRQIRKVGAENILELYELMIADRFCT 359 Query: 340 LTHQDTCFILQVLSDIIHW------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 +T++DT F+L + I K+ + G D++ G GK +G IL + + + Sbjct: 360 MTNRDTKFLLDRKNRITELLKESTSKEKFLAVNGRDIMTLGFKEGKIIGEILEYITEVVL 419 Query: 394 NSSFQLSQEDLHHLL 408 + ++E+L ++ Sbjct: 420 DDPSLNNREELEKII 434 >gi|258513929|ref|YP_003190151.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfotomaculum acetoxidans DSM 771] gi|257777634|gb|ACV61528.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Desulfotomaculum acetoxidans DSM 771] Length = 584 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 86/441 (19%), Positives = 172/441 (39%), Gaps = 51/441 (11%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ +++ L + ++ +VGG VRD LM D DIAT+ ++ +F K +P Sbjct: 7 VLKVINKLKENGKQAFLVGGCVRDLLMGSEPADYDIATSAAAQEILSLF----GKTVPIG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTI ++ +++T + + +G + D RDFTINA+ D +G Sbjct: 63 ERHGTISVLLDGFTVEVSTFKGYVREEG-------PGGLEKDLSLRDFTINAMAIDGEGG 115 Query: 135 VIDYVGGLNDLRNRTIKFIGD-AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 D GG DL + I+ G+ R +ED LR++R RF +G ++ D A K Sbjct: 116 FYDPFGGQKDLEQKIIRSPGNEPEQRFIEDPLRMMRAIRFCCSFG-FSLHPDTNKAIAKN 174 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 ++ + ER+ E+N++L + P I + G+ + + + + ++ Sbjct: 175 HALIQRSAPERVREELNRILISDLPSLGIRLLAETGLLRHVMPEAISLVNFDQRDKPHSK 234 Query: 254 QVFEWKIDSL--------LRFIVLISWQDK----------------------KSILSMAK 283 VFE + L +R L+ K + I S+ K Sbjct: 235 DVFEHTMAVLEATPPRLNVRLAALLHDIGKTLTFSADERVTGHFYGYSLKGCRVIESILK 294 Query: 284 KFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 + + + + + L +K+L G+ + + A + T Sbjct: 295 RLRYDNKTIENVSVLVGEHMSCFPKLRDVSLKRLVKRVGEHNLDDLFDLQRANILVSATP 354 Query: 343 QD-------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 D I ++L++ + + G D++ G G ++G +L ++ Sbjct: 355 FDFSDLDAMRQGIERILNEKSPLRIKDLAVNGRDLIAIGFRSGPEMGRMLELLLDAVLDD 414 Query: 396 SFQLSQEDLHHLLRKLIASSQ 416 S + + L + + + + Sbjct: 415 SVKNDRVALLKIAEEYLMDRE 435 >gi|329770481|ref|ZP_08261859.1| hypothetical protein HMPREF0433_01623 [Gemella sanguinis M325] gi|328836230|gb|EGF85899.1| hypothetical protein HMPREF0433_01623 [Gemella sanguinis M325] Length = 413 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 100/400 (25%), Positives = 190/400 (47%), Gaps = 33/400 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L ++NK +S VGG VRD ++N + DIDI T LP+ + IFSKT I T Sbjct: 43 AIEVLEIINKAGFESYFVGGCVRDYILNKNFSDIDITTNALPEEIKEIFSKT----IDTG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ ++ R KV F + K D RRDFTINA+ D + Sbjct: 99 IQHGTVTVLYKNNSYEITTFRTEDNYSNHRSPDKVEFVNNLKDDLDRRDFTINAMALDIK 158 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G + D+ G+ND+ N+ IK + + + R ED LR++R FRF + G +I+++ A K Sbjct: 159 GYIYDFHSGVNDITNKIIKTVNNPNERFFEDALRMIRAFRFSSKLG-FSIENNTFNAICK 217 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K ++ +S ERI +E KL E + + GI I + V + Sbjct: 218 NSKLIEYVSIERIITEFKKLFEGMGNKKSFELLLKSGI---------NIYIPFFKYVKKY 268 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 ++ ++ +++ + K +S KK L + + ++ ++ L+IP Sbjct: 269 NDFSKYTFCQIMYYLMFFN----KIPISELKKLKLSNKEVSK-VKEYDLIYSNFNLNIP- 322 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 I+K+ Y Y + ++ ++F + + + + + +T ++++ Sbjct: 323 IEKILYQYSLEDVLFISRLFNFMEDRKI----------LNTKLNIRSFNDVNITSKEIIE 372 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 PG + +I+ + + + ++ +++L Sbjct: 373 LVNKTPGPWIKDIIKKIENNILLGRLKNDNNEIIKFIKEL 412 >gi|257065886|ref|YP_003152142.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Anaerococcus prevotii DSM 20548] gi|256797766|gb|ACV28421.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Anaerococcus prevotii DSM 20548] Length = 450 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 115/406 (28%), Positives = 185/406 (45%), Gaps = 43/406 (10%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 NI+ L + KS VGGAVRDSL++ V DIDI T P+ + +F +K+I Sbjct: 11 NIIERLKEAGFKSFPVGGAVRDSLLSREVSDIDITTDARPEEIEEVFRD--FKLIDIGKR 68 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GTIK+I + F+ITT R + DGR+ +V F+ + D RRDFTINA+ D QG+ Sbjct: 69 FGTIKVIIEGEAFEITTFRKESAYRDGRHPTEVRFSDNLIDDLERRDFTINAMAFD-QGE 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG +DL + I+ +GDA RI ED LR LR RF G I+ A + Sbjct: 128 IIDPFGGRDDLSMKVIRAVGDARERIDEDLLRSLRAVRFANRLG-FTIEESLKEAIRENA 186 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + +S ERI SE++++L + P + I M G+ EIF +V+ ++ Sbjct: 187 NKINSISQERIASELSEILTSATPSSGIRLMDEVGLLAEIFPEVKRTVGFDQHSSYHSDD 246 Query: 255 VFEWKI--------DSLLRFIVLIS----------------------WQDKKSILSMAKK 284 V+ + D +RF L ++ + K+ Sbjct: 247 VYNHSLKVLDKSPADLAVRFSALYHDVGKVYTFFLDERGEGRFFGHQNLSEEMLRKRLKE 306 Query: 285 FSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGD----KVMIAKLKIFLALHYNN 339 + S + + T + I+KL G+ ++ + L+ + + Sbjct: 307 LKFSNKFIDDATSLVKRHMDCSNTYTKKSIRKLLRRLGEGNLRQLFDLQRADILSTKHPD 366 Query: 340 LTHQD--TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 ++ D + +VL D I K+ + G+D++ G P GK +G+ Sbjct: 367 TSNIDLGEEILTEVLKDNIPKKRSELAIDGNDLISMGYPQGKIIGD 412 >gi|126463626|ref|YP_001044740.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides ATCC 17029] gi|126105290|gb|ABN77968.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides ATCC 17029] Length = 380 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 122/403 (30%), Positives = 190/403 (47%), Gaps = 28/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V W + ++L + ++ VGG VR++L+ V DID+AT +P V + S Sbjct: 3 VSGDWLVQPATQRLCAVLAEAGHRALFVGGCVRNALLGRPVSDIDLATDAVPAAVSALAS 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG ++ + Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + + Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPARSVASMECAGVLAVVLPGAEARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + E D LLR L +A + + Sbjct: 243 LPVLVHLEE-----GRAPDWLLRLASL-------GGAEVADRLR-----LSRADAAALAR 285 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + L+ + Y G ++ + + AL +T + + Sbjct: 286 LREAALAGAPPAEQGYRLGARLGAGAVLLRAAL-------TETPPPAGWEAAVERGAAAR 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+ D++ G +G L ++ WI S F+L + L Sbjct: 339 FPVAAADLMPA--LTGPALGARLRALEERWIASDFRLDRAALL 379 >gi|257898840|ref|ZP_05678493.1| poly A polymerase [Enterococcus faecium Com15] gi|257836752|gb|EEV61826.1| poly A polymerase [Enterococcus faecium Com15] Length = 402 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 171/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R + D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLGKISVERINVEFIKMLLGNERSAGIHAFIETECY-ICCPGLREEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + +KT + Sbjct: 246 PSVPLKEESQAWTLLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRKTGVLEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G + + ++ +++ H D + + + + G +++ Sbjct: 306 FE--LYFLGKEHALQVEELMT--YFDETPHMD--VVEESYDRLPIKSLSELAIDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 360 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 398 >gi|70726456|ref|YP_253370.1| tRNA CCA-pyrophosphorylase [Staphylococcus haemolyticus JCSC1435] gi|123660233|sp|Q4L6G1|CCA_STAHJ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|68447180|dbj|BAE04764.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 400 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 106/405 (26%), Positives = 176/405 (43%), Gaps = 26/405 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL + + ++ VGG+VRD LMN + DIDI T+ PD + IF KT IP Sbjct: 9 AKPILEKIEQHGFEAYFVGGSVRDYLMNRHIHDIDITTSATPDEIESIFEKT----IPIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R +V F RD K D RRDFTINA+ D+ Sbjct: 65 REHGTINVVYQGTNYEVTTFRAEAEYVDHRRPSEVYFVRDLKEDLQRRDFTINAIAMDKN 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + DY G L IK +GDA R ED LRILR RF + I+ D A Sbjct: 125 FNIYDYFEGDVALNQHIIKTVGDAKERFKEDALRILRGLRFQSQLN-FTIEGDTFEAMKH 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ LS ERI E+ KL++ +N + +++ + F + + Sbjct: 184 QIADVEHLSIERIVVELKKLIKGQNVSQSYLNLIDLNFFNYV---------PFFRSLDMK 234 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + I L +L++ + + LS + + + + +S E Sbjct: 235 QTKVNSPISFELWIAILLTVEQTNTSLS---DLKISNNEKTKINQYHKIMIEMPQVSSKE 291 Query: 313 IKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTC-FILQVLSDIIHW----KKPLFPLT 366 KLF Y YG +I + I L NN+ F LQ + +I + + Sbjct: 292 QLKLFVYDYGMNNIIDIIAINSILEDNNIKIASPLIFNLQSIKEIDQHLPIRSRRELNIN 351 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G D+++ G + +L + + + + +++L +++ Sbjct: 352 GGDILRITSKKSGPWLKEVLRQIEIDVLTNKVPNLKDELLKWVKE 396 >gi|314938015|ref|ZP_07845325.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133a04] gi|314941999|ref|ZP_07848860.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133C] gi|314948748|ref|ZP_07852120.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0082] gi|314951766|ref|ZP_07854805.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133A] gi|314991827|ref|ZP_07857285.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133B] gi|314995868|ref|ZP_07860955.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133a01] gi|313589972|gb|EFR68817.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133a01] gi|313593638|gb|EFR72483.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133B] gi|313596045|gb|EFR74890.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133A] gi|313599251|gb|EFR78096.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133C] gi|313642590|gb|EFS07170.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0133a04] gi|313644814|gb|EFS09394.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium TX0082] Length = 425 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 36 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 91 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R D RRDFTINA + Sbjct: 92 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 151 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 152 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 210 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 211 NHELLGKISVERINVEFIKMLLGNERAAGIHAFIETECY-ICCPGLKEEG-EALLRFAEL 268 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + ++T ++ Sbjct: 269 PSVPLKEESQAWALLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 328 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ ++++ D + + + + G +++ Sbjct: 329 FE--LYFLGKKHALQVEELM--IYFDETPQMDA--VGESYDRLPIKSLSELAVDGKILLE 382 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 383 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 421 >gi|221640701|ref|YP_002526963.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides KD131] gi|221161482|gb|ACM02462.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides KD131] Length = 380 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 120/403 (29%), Positives = 191/403 (47%), Gaps = 28/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + ++L + ++ VGG VR++L+ +V DID+AT +P V + + Sbjct: 3 ISGDWLVQPATQRLCAVLAEAGHRALFVGGCVRNALLGRAVSDIDLATDAVPAAVSALAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIDHGTVTVIAGGVPHEVTTFRRDVETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNI 182 NALYA+ G VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG ++ + Sbjct: 123 NALYAEASGAVIDPLGGLPDLIARRVRFVGDPIRRIEEDYLRILRFFRFHAIYGAPDEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +G+ LS ER+ +E+ KLL A +P ++ M G+ + + + Sbjct: 183 DAEGLAACAARAEGVAQLSRERVGAEMRKLLAADDPAPSVASMECAGVLAVVLPGAEARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + E D LLR L +A + + Sbjct: 243 LPVLVHLEE-----GRAPDWLLRLASL-------GGAEVADRLR-----LSRADAAALAR 285 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + L+ + Y G ++ + + AL +T + + Sbjct: 286 LREAALAGAPPAEQGYRLGLRLGAGAVLLRAAL-------TETPPPAGWEAAVERGATAR 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+ D++ G +G L ++ WI S F+L + L Sbjct: 339 FPVAAADLMPA--LAGPALGARLRALEERWIASDFRLDRGALL 379 >gi|259503406|ref|ZP_05746308.1| polyA polymerase [Lactobacillus antri DSM 16041] gi|259168651|gb|EEW53146.1| polyA polymerase [Lactobacillus antri DSM 16041] Length = 401 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 91/406 (22%), Positives = 160/406 (39%), Gaps = 23/406 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L + + ++ VGG VRD+++ + DIDIAT+ P + RIF +T + Sbjct: 11 EPARPVLQKIEEAGFEAYFVGGCVRDTILGDPIHDIDIATSAYPSEIKRIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R V F R D RRDFTINAL Sbjct: 67 TGIEHGTVMILDHGIGYETTTFRTESGYQDFRRPDNVTFVRSLAEDLQRRDFTINALALR 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G+V+D GL DL R I+ +GD + R ED LR++R RF + + ID Sbjct: 127 ENGEVVDLFDGLGDLHRRLIRAVGDPNERFHEDALRMMRAVRFASKL-DFVIDQPTRTGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 L ++ ER E+ K+ +NP + G+++ + QLS ++ Sbjct: 186 KANAHLLSKIAVERTRVELEKMFLGQNPPAGLKDFLETGLYRYC-PGLANAH-QQLSSLL 243 Query: 251 EAEQVFEWK-IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY---FLISFFNCNFNQK 306 ++ + + + + + + + E +I N +Q+ Sbjct: 244 VNGNGWKLANTEQVWALLAVQLGLSGREAAKFLRTWKTSNETIKQVGKIILAVNALRHQQ 303 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 K + D +A + + + D I + Sbjct: 304 VTPDLMFKVGWPALSDANQVAAIYGWQRSIGDLKKQYDALPIKTARE---------LAID 354 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G +++ G+ PG +G +L + +N + L L Sbjct: 355 GRTLIQEGGLKPGPALGKVLNTLVEAVVNGQLANEKAVLLERAASL 400 >gi|62185492|ref|YP_220277.1| putative poly A polymerase [Chlamydophila abortus S26/3] gi|62148559|emb|CAH64330.1| putative poly A polymerase [Chlamydophila abortus S26/3] Length = 410 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 111/407 (27%), Positives = 181/407 (44%), Gaps = 17/407 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL L ++ VGG VRD LM +++IDIAT+ P V IF T + Sbjct: 7 EAAKKILLKLRNAGYQAYFVGGCVRDMLMGKPIEEIDIATSAPPVIVSTIFPDT----LA 62 Query: 73 TSISYGTIKIICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 ++G I + + F++ T RS + TDGR+ + V K D+LRRDFTIN +Y D Sbjct: 63 IGAAFGIIVVKENNRLFEVATFRSDENYTDGRHPERVIFSSMKEDALRRDFTINGMYYDP 122 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + K+ D V G DL R I+ IG R ED LRILR RF + G +D A Sbjct: 123 FEEKLYDLVEGRRDLEKRVIRAIGHPKLRFSEDKLRILRAIRFSSSLG-FTLDPATERAI 181 Query: 191 IKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 IK L +S ERIW E+ K+L+ KNP A+ + I IF ++++I L Sbjct: 182 IKEAPSLVCSVSPERIWQELKKMLK-KNPYEALSLLIQLKIMTIIFPELRDIPPSLLRTS 240 Query: 250 IEAEQVFEWKIDSLLRFIV-LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 E + + F++ L +++ + + + + ++ + + Sbjct: 241 SEFAKRLNPLDFPEICFLLPLFQGVSEEAACVAFTRLRISNKDLKLIQLWYQALPQFQNV 300 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD-----IIHWKKPLF 363 S + +L + L +F A + Q +Q L + I+ K Sbjct: 301 SNNRVFWAHFLASPTAHLF-LSLFSATQKDPSQQQHFIARVQELEERLEQFIVRIKTASP 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ D++ GI PG+ +G++L + I + +E + LL++ Sbjct: 360 LVSAPDLIARGIAPGRLLGDLLKEAEILSIENECH-DKEKILTLLKE 405 >gi|189182930|ref|YP_001936715.1| poly(A) polymerase [Orientia tsutsugamushi str. Ikeda] gi|189179701|dbj|BAG39481.1| poly(A) polymerase [Orientia tsutsugamushi str. Ikeda] Length = 402 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 124/410 (30%), Positives = 216/410 (52%), Gaps = 10/410 (2%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M I F ++ +L +L + I+GGA+R+ ++ V DIDIAT +LP++VM Sbjct: 1 MTEIPICIIFPSQNIEKLLLMLASSIKSARIIGGAIRNIILGHPVNDIDIATPLLPEQVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K T I +GT+ + +++ F+ITTLR D+ GRYAKV F+ D+ D+ RR Sbjct: 61 NLLKLNNIKCYATGIKFGTVTAVIKQEKFEITTLRQDIQCYGRYAKVEFSNDYFEDAKRR 120 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINAL +Q + DY GL DL++R + FIGD+ RI ED LRILRFFRF ++Y Sbjct: 121 DFTINALSYSFEQSLLYDYFNGLQDLKDRRVIFIGDSDTRIQEDVLRILRFFRFSSYYA- 179 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++ID +G + K K L ILS ER+ E++K++ + N +V M I I L ++ Sbjct: 180 RSIDQEGYQSCAKYAKSLSILSKERVVQELSKIIISPNAYETLVKMAEINITYYIGLRLK 239 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 ++L V + ++ ++ + VL+S D + + + + + ++ Sbjct: 240 -LNLSVFKNVTTIAKKKSILLNVIVLYSVLLSSNDVQDLKEILSNLRFSKAMIRKIVRLC 298 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 ++ + + + ++L + I LAL ++ ++ + Q + ++I Sbjct: 299 LFLSECQSKNAIFLIRKYWLTRADNIDD--YINLALLLGCISDEEANMLKQQVYELI--- 353 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P P++G D+ + G + + +L++ WINS F L++++L LL+ Sbjct: 354 -PKLPVSGSDLKELGFKK-QAIQEVLLYLNHAWINSDFTLNKQELIDLLK 401 >gi|228990652|ref|ZP_04150617.1| CCA-adding enzyme [Bacillus pseudomycoides DSM 12442] gi|228769178|gb|EEM17776.1| CCA-adding enzyme [Bacillus pseudomycoides DSM 12442] Length = 384 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 175/391 (44%), Gaps = 15/391 (3%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + + ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ Sbjct: 1 MKQHGHEAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVI 56 Query: 82 IICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 ++ +++TT R++ D R V F R + D RRDFT+NA+ +++G +ID Sbjct: 57 VVQEGIPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLF 116 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 G +R + I +G+A R ED LR++R RF + G ++ A + L+ Sbjct: 117 AGQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFF-LEEQTKRAIEEYGHLLEH 175 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 ++ ERI E KLL K +N + + + + +Q L + FE Sbjct: 176 IAIERITVEFEKLLTGKYCVNGLQQLVETKLVTHL-PYLQMSEERILKAMQYNWGFFETD 234 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 I++ F+ I + L +++ + +++ ++KT S + Y Sbjct: 235 IEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVILAIRSRKTKSWDAV--FLYK 289 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP-PG 378 G + +++ A+ + + + + ++G+D++ + PG Sbjct: 290 TGLHTALMAERVYQAIIK-KYDIFSVNQVQSLFDSLSIHNRQEMKVSGNDLLGWTEKTPG 348 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 V +L ++E + + +E + L+ Sbjct: 349 PWVAEVLQRIEEEILQERLENEKEKIREWLQ 379 >gi|169827541|ref|YP_001697699.1| CCA-adding enzyme [Lysinibacillus sphaericus C3-41] gi|168992029|gb|ACA39569.1| CCA-adding enzyme [Lysinibacillus sphaericus C3-41] Length = 392 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 98/398 (24%), Positives = 171/398 (42%), Gaps = 25/398 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++ L + ++ IVGGAVRD+L+N D+D+AT LP+ V +F +T + Sbjct: 10 AYSVIEQLEQAGFEAVIVGGAVRDALLNRPAHDVDVATNALPEEVKSVFQRT----VDIG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I ++TT R+D TD R KV F R + D RRDFT+NA+ Sbjct: 66 IQHGTVLVIVPAGPVEVTTYRTDGEYTDHRRPDKVQFVRSLQDDLQRRDFTMNAIAMRHD 125 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +DY GG D+ R I+ +GDA R ED LR+LR RF A + I D + A Sbjct: 126 GTFVDYYGGRQDIELRVIRAVGDADKRFAEDALRMLRAIRFSAQL-DFTIAKDTMTAIQN 184 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + ++ ERI +E++KL + + + + G+ + + Q Sbjct: 185 RAPDIAFIAKERIKAELDKLWLGTSVFSGLQKLEESGLAAYLHGNFQAHRWYDFRT---- 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E K F +L + + + + L + F+ + + Sbjct: 241 ----EDKHVGWAYFALLQG----ANWREILRDYRLSNKEMAFVKAVLTAYEALNSGWTN- 291 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 ++ Y ++ + A + L + +LQ + +K + G D++K Sbjct: 292 --IHYFTYKEQELEAAIYFAKLLQLDVCLPSQPIRVLQ--DQLPIQQKQEVVVNGADLLK 347 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G G V +L + I++ + QE + + L Sbjct: 348 WSGKKGGPWVKEVLGDILEAIIHNELENDQERIKNWLD 385 >gi|42523306|ref|NP_968686.1| poly A polymerase [Bdellovibrio bacteriovorus HD100] gi|39575512|emb|CAE79679.1| poly A polymerase [Bdellovibrio bacteriovorus HD100] Length = 397 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 105/420 (25%), Positives = 189/420 (45%), Gaps = 27/420 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M S++Q H + +I L + + GG VRD+L+ + D+D+AT P++V Sbjct: 1 MQSLLQ-SHPHWPAVESIYHRLQAHGYMAFLAGGCVRDALLGVQAHDLDLATNATPEKVE 59 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119 +FSKT + S+G ++++ ++ T R+D +DGR + V + D+ R Sbjct: 60 SLFSKT----VNVGKSFGVMRVLVEGADIEVATFRNDGTYSDGRRPENVVFSSPQEDAQR 115 Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NAL+ D +V+DYV G DL+ R ++ +GDA R ED+LR+LR RF A Sbjct: 116 RDFTVNALFYDLATAQVLDYVEGQKDLKARVLRTVGDAERRFEEDHLRLLRAARFSAQLN 175 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ A K + +K +S ERI E+ KLL+ ++ + + M + G+ K +F Sbjct: 176 -FELEPVSFAAVKKMAEKVKSVSGERIREEMTKLLKTEHADHGLQVMKDSGLMKVLFPFR 234 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + D + + E + R + + ++ + L R + Sbjct: 235 LRKN-DWVKNSLATE--------AWQRLAMFVRSAQGTELVVVLDMLKLSTRDRRAIEDA 285 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + +T+ + K + + ++ L+I L+ + I +L++ W Sbjct: 286 WKVWQDPQTVLKNSLGKQLQMLAKEGVVFALRILLS------EAVEKTAIEFLLAEWKSW 339 Query: 359 KKPLFP--LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ L L G+DV G G +G L ++ + Q E L L + L S Sbjct: 340 QEVLPRPFLNGEDVK--GRLTGPAIGVCLDKAFEQQLERQLQSRDEALLWLKKYLERESS 397 >gi|313884128|ref|ZP_07817894.1| putative tRNA adenylyltransferase [Eremococcus coleocola ACS-139-V-Col8] gi|312620575|gb|EFR31998.1| putative tRNA adenylyltransferase [Eremococcus coleocola ACS-139-V-Col8] Length = 411 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 94/406 (23%), Positives = 187/406 (46%), Gaps = 20/406 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + +++ + ++ VGG VRDSL+ L + DIDI ++ P + IF T I Sbjct: 11 KAAMPVMAQIESHGYEAYFVGGCVRDSLLGLPIHDIDITSSAQPQEIEAIFKHT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R + +D R V F R+ + D+LRRDFT+NAL D Sbjct: 67 VGKEHGTIIVMWDQVPYEVTTFRIEGKYSDHRRPDSVAFVRNLQEDTLRRDFTVNALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +QG+V D+ GL DL+ I+ +G+A R ED LR++R RF + G +I+ L A Sbjct: 127 RQGQVYDFHDGLKDLKAERIRAVGNAEARFQEDGLRMMRALRFASQLG-FSIEETTLRAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQ 248 K LK +S ERI E +K L A+ + + + + + L ++ ++ +LS Sbjct: 186 QKLAPTLKYISMERIRIEFSKFLLGSYLHTALPYFLDSNLSEYLLLPQGKVDSAIAELSD 245 Query: 249 VIEAEQVFEWKIDSLLRFIVLIS--WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 ++E + + + +++ + D+ + + +K++ + +++F + Sbjct: 246 LLEETRNQFFANEESFVWMLFLQKLGLDQAKMKKLLRKWTFSNKFIDQVLAFDTLMHFET 305 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 L Y + ++F + + I+++ + + + + Sbjct: 306 ELFWSSQTAYAYNLNLLEPVQAYRLF-------RGEKTSKDIVEIKASLPMQDRQDMLVD 358 Query: 367 GDDVV-KYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G DV+ + G +G IL + + ++ QE + +++ Sbjct: 359 GKDVMAALELKQGGPLIGQILAIIEAKILHGELSNEQEAIISFVKE 404 >gi|257887709|ref|ZP_05667362.1| poly A polymerase [Enterococcus faecium 1,141,733] gi|257823763|gb|EEV50695.1| poly A polymerase [Enterococcus faecium 1,141,733] Length = 402 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 170/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R + D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLGKISVERINVEFIKMLLGNERSAGIHAFIETECY-ICCPGLREEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + +KT + Sbjct: 246 PSVPLKEESQAWTLLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRKTGVLEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ +++ D + + + + G +++ Sbjct: 306 FE--LYFLGKKHALQVEELMT--YFDETPQMD--VVEESYDRLPIKSLSELAVDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 360 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 398 >gi|148284259|ref|YP_001248349.1| polyA polymerase [Orientia tsutsugamushi str. Boryong] gi|146739698|emb|CAM79508.1| polyA polymerase [Orientia tsutsugamushi str. Boryong] Length = 402 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 122/410 (29%), Positives = 215/410 (52%), Gaps = 10/410 (2%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M I F ++ +L +L + I+GG++R+ ++ V DIDIAT +LP++VM Sbjct: 1 MTEIPICIIFPSQNIEKLLLMLATPIKSARIIGGSIRNIILGQPVNDIDIATPLLPEQVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K T I +GT+ + +++ F+ITTLR D+ GR+AKV F+ D+ D+ RR Sbjct: 61 DLLKLNNIKCYATGIKFGTVTAVIKREKFEITTLRQDVQCYGRHAKVEFSNDYFEDARRR 120 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINAL +Q + DY GL DL++R + FIGD+ RI ED LRILRFFRF ++Y Sbjct: 121 DFTINALSYSFEQSLLYDYFNGLQDLKDRRVIFIGDSDTRIQEDVLRILRFFRFSSYYA- 179 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++ID +G + K K L ILS ER+ E++K++ + N +V M I I L ++ Sbjct: 180 RSIDQEGYQSCAKHAKSLTILSKERVIQELSKIIISPNAYETLVKMAEINITYYIGLRLK 239 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 ++L V + + ++ + VL+S D + + + + + ++ Sbjct: 240 -LNLPVFKNVTTIAKKKSILPNVIVLYSVLLSSNDVQDLKEILSNLRFSKAMIRKIVRLC 298 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 ++ + + + ++L + + LAL ++ ++ Q + ++I Sbjct: 299 IFFSECQSKNALFLIRKYWLTRVDNIDD--YVNLALLLGCISDEEANMFKQQVYELI--- 353 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P P++G D+ + G + + +L++ K WINS F L++++L LL+ Sbjct: 354 -PKLPVSGSDLKELGFKK-QAIQEVLLYLKHAWINSDFTLNKQELIDLLK 401 >gi|157825180|ref|YP_001492900.1| Poly(A) polymerase [Rickettsia akari str. Hartford] gi|157799138|gb|ABV74392.1| Poly(A) polymerase [Rickettsia akari str. Hartford] Length = 385 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 137/394 (34%), Positives = 198/394 (50%), Gaps = 25/394 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ILSLLNK ++ ++GG VRD+L+ S DIDIAT ++PD V I K K I T + Sbjct: 16 KKILSLLNKKG-QARLIGGCVRDALLEKSSYDIDIATNLIPDEVTNILLKANIKTIQTGL 74 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGK 134 +GTI I + F+ITTLR D+ +GR+AKVVFT D+ D+ RRDFTINAL + + Sbjct: 75 KFGTITAILNNEQFEITTLRKDIECNGRHAKVVFTDDFAEDAARRDFTINALSYCPFKNE 134 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + DY G DLR + FIG+A RI EDYLRILRFFRF ++Y + +D A K Sbjct: 135 IYDYFEGFKDLRQEKVVFIGEALDRIKEDYLRILRFFRFSSYYTNQ-LDDGIFKACKALK 193 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 GLK LS ERI SE++K++ +K + M+ GI + IF +Q + Q E Sbjct: 194 DGLKTLSRERIKSEMDKIIVSKRAEQILKAMFEIGILELIF-SIQNYEIKFFEQSKALEL 252 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 ++L + ++ S L + KF+ I+ I F N I K Sbjct: 253 ATN-------YALLLYNLKNINSKLLLDWKFTKQEVIQILSIINFLNNAECDIKKIWFEK 305 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 K + Y + A L H + ++ +P F + G+D++ Sbjct: 306 KNYKEY----------LLAASIIGKLNHSQVKEFIHKYDPLL---RPKFQVNGNDLLNMN 352 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 I K++G L + K WI+ F+ S+ +L L Sbjct: 353 IEK-KEIGAKLEYLKNFWIDQDFKPSKSELLEKL 385 >gi|157692744|ref|YP_001487206.1| tRNA CCA-pyrophosphorylase [Bacillus pumilus SAFR-032] gi|167006454|sp|A8FEH9|CCA_BACP2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|157681502|gb|ABV62646.1| bifunctional tRNA adenylyltransferase/tRNA cytidylyltransferase [Bacillus pumilus SAFR-032] Length = 400 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 100/403 (24%), Positives = 184/403 (45%), Gaps = 27/403 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 I IL L++ ++ VGGAVRD L+ + DIDIAT PD V +F KT + Sbjct: 7 HAIPILHTLHEHGYQAYFVGGAVRDVLLGREIGDIDIATDATPDTVESLFEKT----VDV 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 +GT+ ++ +++TT R++ D R +V F K D LRRD TINA+ D Sbjct: 63 GKEHGTVIVLHDGMSYEVTTFRTESEYEDFRRPKEVAFITSLKEDLLRRDLTINAMAMDI 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ID+VGG D+ + I+ +GD R ED LR++R RF + G + ++ A Sbjct: 123 NGEIIDHVGGKQDIERKRIQTVGDPACRFQEDALRMMRAIRFLSQLG-FELAAETAEAME 181 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K K L +S ER E+ KLL+ + AI + + +++E+ +++ L Q Sbjct: 182 KDKHLLANISVERKKIEMEKLLKGRYCERAIKVLISTKLYEEL-PGLEKDRLQDSFQTFP 240 Query: 252 --AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS---FFNCNFNQK 306 E +++ + L D++ + K++ L ++ ++ + +C +N + Sbjct: 241 YYLLDGLEEVWGAVIHLLGL----DEEKAVLFLKEWKLSTKLLKDAVAISRYVDCEWNAE 296 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + G+ V+++ LKI H + + + ++ Sbjct: 297 KM---------FEAGEHVLLSSLKITQLKHERRIFFDELEAAKSSYDALPIKTLQDLAVS 347 Query: 367 GDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G D++ + GK + L K+ +++ + +E + L Sbjct: 348 GKDLMAFRQKTSGKWIAEELDLVKKAVLHNHLENRKEAIEEWL 390 >gi|257884874|ref|ZP_05664527.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,501] gi|257820712|gb|EEV47860.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,501] Length = 402 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 173/399 (43%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLGKISVERINVEFIKMLLGNERAAGIHAFIETECY-ICCPGLKEEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + + ++ + I S K + ++ + + ++T ++ Sbjct: 246 PSVPLKEESQVWTLLISQLGLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ ++++ D + + + + G +++ Sbjct: 306 FE--LYFLGKKHALQVEELM--IYFDETPQMDA--VGESYDRLPIKSLSELAVDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + +++ + L K Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNNKKQVLDFLSK 398 >gi|163791067|ref|ZP_02185487.1| poly A polymerase [Carnobacterium sp. AT7] gi|159873623|gb|EDP67707.1| poly A polymerase [Carnobacterium sp. AT7] Length = 400 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 96/402 (23%), Positives = 176/402 (43%), Gaps = 25/402 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ + + ++ VGG+VRD+L+ ++ D+DIAT+ PD + +IF KT I Sbjct: 11 ALPIIDKIEEAGFEAYFVGGSVRDTLLKETINDVDIATSAKPDEIKQIFQKT----IDVG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R K D RRDFTINAL ++ Sbjct: 67 IEHGTVMVLWKDATYEITTFRTESTYQDFRRPDNVEFVRSLKEDLKRRDFTINALAMNRD 126 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++IDY G DL + IK +G+ R ED LR++R RF + +D + +A K Sbjct: 127 GQIIDYFEGQTDLEKKLIKAVGNPEERFFEDALRMMRGVRFVSQLN-FEMDRETELAIQK 185 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ERI E KLL + +F L + +E Sbjct: 186 NHPLLEKIAIERIQVEFTKLLLGSGRKKGLELFIRTNLFYY------CPGLKDQKKALEE 239 Query: 253 EQVFEWKIDS-LLRFIVLISWQDK----KSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 E ID+ ++ + +LI + K + + ++ + S ++ Sbjct: 240 FAKLECTIDNRIVAWTMLIYYLSKSKPASEAEPFLRAWKCSKKEIAQVRSALFA--LEQR 297 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 L+ ++ Y G + + KI L + + I + + + K + G Sbjct: 298 LNDTFNSQVLYQVGLPIALDVEKIMACLGHTASFER----IHSMYQGLPIYNKKEIKING 353 Query: 368 DDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +D+ PGK +G++++ + + ++ + Sbjct: 354 NDLQAALNRKPGKWLGDLMIEMETAILAGELVNEKQAILEWA 395 >gi|261207587|ref|ZP_05922272.1| polynucleotide adenylyltransferase [Enterococcus faecium TC 6] gi|289565099|ref|ZP_06445552.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium D344SRF] gi|294614839|ref|ZP_06694734.1| cca-adding enzyme [Enterococcus faecium E1636] gi|294617518|ref|ZP_06697149.1| cca-adding enzyme [Enterococcus faecium E1679] gi|260077970|gb|EEW65676.1| polynucleotide adenylyltransferase [Enterococcus faecium TC 6] gi|289163106|gb|EFD10953.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium D344SRF] gi|291592301|gb|EFF23915.1| cca-adding enzyme [Enterococcus faecium E1636] gi|291596258|gb|EFF27520.1| cca-adding enzyme [Enterococcus faecium E1679] Length = 402 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 172/399 (43%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLGKISVERINVEFIKMLLGNERAAGIHAFIETECY-ICCPSLKEEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + + ++ + I S K + ++ + + ++T ++ Sbjct: 246 PSVPLKEESQVWTLLISQLGLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ ++++ D + + + + G +++ Sbjct: 306 FE--LYFLGKKHALQVEELM--IYFDETPQMDA--VGESYDRLPIKSLSELAVDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 398 >gi|73662596|ref|YP_301377.1| tRNA CCA-pyrophosphorylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642619|sp|Q49XR3|CCA_STAS1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|72495111|dbj|BAE18432.1| putative poly-A polymerase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 399 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 95/404 (23%), Positives = 168/404 (41%), Gaps = 25/404 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL L ++ VGG+VRD LMN + DIDI T+ PD + +F KT IP Sbjct: 9 AKPILEKLQAHHFQAYFVGGSVRDYLMNRPIHDIDITTSATPDEIETVFDKT----IPIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI +I + + +++TT RS+ D R +V F R+ D RRDFT+NA+ D Sbjct: 65 REHGTINVIYKGEQYEVTTFRSEGDYDDHRRPNEVFFVRNLYDDVQRRDFTMNAIAMDIN 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++ DY G D++++ I+ +G+ R ED LRI+R RF + +G +++ A + Sbjct: 125 YQIFDYFEGQQDIKHQLIRTVGNPDERFDEDALRIIRGLRFQSQFG-FHLEEATFTAMLN 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 +K L+ ERI E+ KL + ++ + FK I + + Sbjct: 184 HIADIKYLAIERIVVELKKLTNGDFVSKSFNNLKHFMAFKYI----------PFFKHYDI 233 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + F+ + Q ++ I + + + + + + Sbjct: 234 TKFTLRNAMPFTTFVAFLISQ-QREIDANIADLKVSNNEKKRIKTLVQLIDQIDEVQTKS 292 Query: 313 IKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCF-----ILQVLSDIIHWKKPLFPLT 366 KLF Y YG K ++ L L N +T + +V + + + Sbjct: 293 QLKLFVYDYGKKDILEVLSYLDELKRNRITSISPLIVNDQTVTEVAKQLPMLSRSEMDIN 352 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G D+++ G + L + I+ + +L ++ Sbjct: 353 GKDILEIANKKSGPWLKETLREVEYAIISGEVVNFKPELKKWVK 396 >gi|293570256|ref|ZP_06681325.1| cca-adding enzyme [Enterococcus faecium E980] gi|291609663|gb|EFF38924.1| cca-adding enzyme [Enterococcus faecium E980] Length = 402 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 170/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R + D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLSKISVERINVEFIKMLLGNERSAGIHAFIETECY-ICCPGLREEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + ++T + Sbjct: 246 PSVPLKEESQAWTLLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGVLEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G + + ++ +++ D + + + + G +++ Sbjct: 306 FE--LYFLGKEHALQVEELMT--YFDETPQMD--VVEESYDRLPIKSLSELAVDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 360 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 398 >gi|227551173|ref|ZP_03981222.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium TX1330] gi|227179735|gb|EEI60707.1| tRNA CCA-pyrophosphorylase [Enterococcus faecium TX1330] Length = 434 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 170/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 45 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 100 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R + D RRDFTINA + Sbjct: 101 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 160 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 161 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 219 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 220 NHELLGKISVERINLEFIKMLLGNERSAGIHAFIKTECY-ICCPGLREEG-EALLRFAEL 277 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + +KT + Sbjct: 278 PSVPLKEESQAWTLLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRKTGVLEP 337 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ +++ D + + + + G +++ Sbjct: 338 FE--LYFLGKKHALQVEELMT--YFDETPQMD--VVEESYDRLPIKSLSELAVDGKILLE 391 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 392 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 430 >gi|326692490|ref|ZP_08229495.1| polynucleotide adenylyltransferase [Leuconostoc argentinum KCTC 3773] Length = 401 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 91/402 (22%), Positives = 169/402 (42%), Gaps = 18/402 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L L ++ VGG+VRD L+ + D+DIA+ P+ V + F KT + Sbjct: 11 EAAKPVLQRLEAAGFEAYFVGGSVRDMLLQKPIHDVDIASAAFPEEVKKQFDKT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ ++ITT R++ TD R V F R D RRDFTINAL Sbjct: 67 TGIQHGTVMVLDHGLGYEITTFRTESTYTDFRRPDTVTFVRSLSEDLQRRDFTINALAMT 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G+++D GL DL I+ +G+A R ED LR++R RF A G + I D A Sbjct: 127 YDGEIVDLFDGLADLSAGVIRAVGEAEVRFTEDALRMMRALRFSAQLGFQ-IAPDTRAAL 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L ++ ERI E KLL + ++ + + + + Q + +I Sbjct: 186 QRLAPNLAKIAVERIRVEFEKLLMGQQAAASLAMAIEDDVVTYLPGQLDQW---QFADII 242 Query: 251 EAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + + ++ +L S + + + + + R++ + + ++ Sbjct: 243 ADLKTQQPATIPVVWAHLLTRSTLSESEMTTFMRTWKTSRDLIKMATAVVPVARH---IA 299 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 ++ L+ +Y + ++ + + + D + IH + L G Sbjct: 300 RRDLWTLYQIYDYRDVLMSVLRLIRTDDAVIADVDA----MFEALPIHHTRELRVAGGQL 355 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + + + PG ++G IL ++ + L ++L Sbjct: 356 IAEQIVQPGPQMGRILKQIERAVVTGQVANQPAALLAYAKEL 397 >gi|227500200|ref|ZP_03930269.1| possible tRNA adenylyltransferase [Anaerococcus tetradius ATCC 35098] gi|227217722|gb|EEI83026.1| possible tRNA adenylyltransferase [Anaerococcus tetradius ATCC 35098] Length = 451 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 108/435 (24%), Positives = 187/435 (42%), Gaps = 45/435 (10%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I++ L + ++ VGG VRDSL++L + D+DI + P+ + ++FS + K+I Sbjct: 12 KIINRLKENGFEAYPVGGCVRDSLLDLEISDVDITSNARPEEIEKVFSSS--KLIDIGKK 69 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGK 134 +GTIKII F++TT R++ D R+ + + F + D RRDFTINA+ D +G+ Sbjct: 70 FGTIKIIDFGYEFEVTTFRAESAYRDRRHPEKISFADNIYDDLKRRDFTINAMAFD-RGE 128 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG DL + I+ +GDA RI ED LR +R RF + G I+ + A Sbjct: 129 LIDPFGGRLDLEKKIIRAVGDAKERIDEDLLRSMRAVRFASRLG-FTIEESLMEAIRAKA 187 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + ++S ERI E++K+L + P I + GI EI ++ + Sbjct: 188 CEINLISKERIGEELSKILISDRPSYGIRLLDVAGILSEILPELYKTKGFDQHSSYHQYD 247 Query: 255 VFEWKI--------DSLLRFIVLISWQDKKSILSMAKK---------------------- 284 V+E + D + RF L K + ++ Sbjct: 248 VYEHSLHVLANTSKDLVTRFAALYHDVGKIDTFFLDERGEGRFFGHQKLSDQMLKKRLRA 307 Query: 285 FSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + + + + S I+KL G +V + +L H Sbjct: 308 LKFSNKFIEDASMLVARHMDCSNSYSKKSIRKLLRRMG-EVNLRRLFDLQRADIRATNHP 366 Query: 344 D-------TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 D + +VL+D + K+ + G D++ G P GK +G +L ++E + Sbjct: 367 DTSNIDLGEELLCEVLADDLPKKRSDLAINGSDLLALGYPQGKIIGELLSKIEEEILEEK 426 Query: 397 FQLSQEDLHHLLRKL 411 + + + L ++ Sbjct: 427 LKNEKSAIVEFLTRM 441 >gi|89099892|ref|ZP_01172764.1| tRNA nucleotidyltransferase [Bacillus sp. NRRL B-14911] gi|89085450|gb|EAR64579.1| tRNA nucleotidyltransferase [Bacillus sp. NRRL B-14911] Length = 400 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 175/405 (43%), Gaps = 30/405 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L + ++ VGG+VRD L+ + D+DIAT+ P + IF +T Sbjct: 12 AAPVLEKIETAGYEAYFVGGSVRDYLLGKDISDVDIATSATPMEIKGIFPRTA----DVG 67 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ +++TT RS+ D R KV F R D RRDF +N++ + Sbjct: 68 IEHGTVIVLYDGDSYEVTTFRSESDYEDFRRPSKVDFIRSLDEDLKRRDFRMNSMAMSKD 127 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GG D+R++ I +G+ R ED LR++R RF + ID + A + Sbjct: 128 GRIIDPFGGQEDIRSKRIATVGNPLERFYEDALRMMRAVRFASQL-SFQIDGETYEALVS 186 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ ++ ER +E KLL +N A+ M + G+ + L L+ + Sbjct: 187 EAYLLEKIAVERKLAEFEKLLAGENSFMALKIMADTGLSQH---------LPGLAGKKQE 237 Query: 253 EQVFEWKIDSLL----RFIVLIS--WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQ 305 F ++DS L R+ +L + D K+ S + + +P ++IR + + Sbjct: 238 LISFAGRLDSGLLSEERWALLSAGLGHDFKTAESFLRSWKMPVKKIRQIGKILYWLQYRS 297 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 E Y G + ++ A D +++ + + + Sbjct: 298 VQNWTLE---SVYKAGAEAARNAERVLAA---TGDDSADEEVPVRLYASLPIRSTKELDV 351 Query: 366 TGDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 TG+D++++ P G V +L + I+ +E++ L Sbjct: 352 TGNDLIQWFNKPGGPWVKELLGQVENSIISGHLANKKEEIRGWLE 396 >gi|329943259|ref|ZP_08292033.1| poly A polymerase head domain protein [Chlamydophila psittaci Cal10] gi|332287838|ref|YP_004422739.1| poly A polymerase [Chlamydophila psittaci 6BC] gi|313848410|emb|CBY17414.1| putative poly A polymerase [Chlamydophila psittaci RD1] gi|325506735|gb|ADZ18373.1| poly A polymerase [Chlamydophila psittaci 6BC] gi|328814806|gb|EGF84796.1| poly A polymerase head domain protein [Chlamydophila psittaci Cal10] gi|328915099|gb|AEB55932.1| polynucleotide adenylyltransferase [Chlamydophila psittaci 6BC] Length = 410 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 111/407 (27%), Positives = 182/407 (44%), Gaps = 17/407 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL L ++ VGG VRD LM +++IDIAT+ P V IF T + Sbjct: 7 EAAKKILLKLRNAGYQAYFVGGCVRDMLMGKPIEEIDIATSAPPVIVSTIFPDT----LA 62 Query: 73 TSISYGTIKIICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 ++G I + + F++ T RS + DGR+ + V K D+LRRDFTIN +Y D Sbjct: 63 LGAAFGIIVVKENNRLFEVATFRSDENYQDGRHPERVIFSSMKEDALRRDFTINGMYYDP 122 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + K+ D V G DL R I+ IG R ED LRILR RF + G +D A Sbjct: 123 FEEKLFDLVEGRRDLEKRVIRAIGHPKLRFSEDKLRILRAIRFSSSLG-FTLDPATERAI 181 Query: 191 IKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 IK L +S ERIW E+ K+L+ KNP A+ + I IF ++++I L Sbjct: 182 IKEAPSLVCSVSPERIWQELKKMLK-KNPYEALSLLIRLKIITVIFPELRDIPPSLLRTS 240 Query: 250 IEAEQVFEWKIDSLLRFIV-LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 IE + + F++ L +++ + + + + ++ + + Sbjct: 241 IEFAKRLNPLDFPEICFLLPLFQGVSEEAACVAFTRLRVSNKDLKLIQLWYQALPQFQNV 300 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD-----IIHWKKPLF 363 S + +L + L +F A + Q+ +Q L + I+ K Sbjct: 301 SNNRVFWAHFLASPTANLF-LSLFSATQKDPSKQQNFIARVQELEERLEQFIVRIKTASP 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ D++ GI PG+ +G++L + I + +E + LL++ Sbjct: 360 LVSAPDLISRGIAPGRLLGDLLKEAETLSIENECH-DKEKILTLLKE 405 >gi|146278676|ref|YP_001168835.1| polynucleotide adenylyltransferase region [Rhodobacter sphaeroides ATCC 17025] gi|145556917|gb|ABP71530.1| Polynucleotide adenylyltransferase region [Rhodobacter sphaeroides ATCC 17025] Length = 380 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 124/403 (30%), Positives = 192/403 (47%), Gaps = 28/403 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 ++ W + + + L ++ VGG VR++L+ V DID+AT +PD V + + Sbjct: 3 IEGDWIAEPATQTLCAALAAAGHRALFVGGCVRNALLGRPVADIDLATDAVPDTVSAVAA 62 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 +KV+PT I +GT+ +I ++TT R D+ T GR+A V F+ D D+ RRDFT+ Sbjct: 63 AAGFKVVPTGIEHGTVTVIASGIPHEVTTFRRDIETFGRHAVVAFSTDVAEDAARRDFTM 122 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNI 182 NALYA+ G+VID +GGL DL R ++F+GD RI EDYLRILRFFRF A YG+ + + Sbjct: 123 NALYAEATGEVIDPLGGLPDLIARRVRFVGDPIQRIEEDYLRILRFFRFHAIYGDPSEGL 182 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D++GL A +GL LS ER+ +E+ KLL A +P A+ M G+ + + Sbjct: 183 DAEGLAACAARAEGLGQLSRERLGAEMRKLLAADDPAPAVAAMEAAGVLVRVLPGASARA 242 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L L + E ++ W L+R L +A + L R L Sbjct: 243 LPVLVHLEE-DRPAGW----LVRLASL-------GGEEVADRLRLSRADGAALGRLRAAA 290 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + Y G + + + AL + +D+ Sbjct: 291 LRGAPPA-----EQGYRLGLDLGAGAVLLHAAL-------SEAPPPEGWRADVARGAGAR 338 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 FP+ D++ G +G L ++ WI S F+L + L Sbjct: 339 FPVRAADLMPA--LAGPALGARLRELEERWIASDFRLDRAALL 379 >gi|325571124|ref|ZP_08146696.1| poly A polymerase [Enterococcus casseliflavus ATCC 12755] gi|325156209|gb|EGC68395.1| poly A polymerase [Enterococcus casseliflavus ATCC 12755] Length = 404 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 90/404 (22%), Positives = 171/404 (42%), Gaps = 16/404 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ +L + ++ VGG+VRD+++ + D+DIAT+ P + +F +T I Sbjct: 11 AEAAPLLKKIEAAGYEAYFVGGSVRDTILGQPIHDVDIATSAFPAEIKALFPRT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + ++ITT R++ D R KV F R K D RRDFTINAL Sbjct: 67 IGIEHGTVLVLWEQAQYEITTFRTEAAYQDYRRPDKVDFVRSLKEDLKRRDFTINALALQ 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G +ID GL D+ N+ ++ +G R ED LR++R RF + G ++++ L A Sbjct: 127 EDGVIIDLFDGLADIDNQILRAVGHPQERFHEDALRMMRGLRFVSQLG-FVLETETLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 L +S ERI E KLL + A+ + I+ + L ++ Sbjct: 186 HANHALLGKISVERIMIEFVKLLLGNHRNQALRALVETEC--YIYCPGLREYGEALLRMA 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + ++ +++ S K + + + + + ++ Sbjct: 244 DLPAIPLENETTAWVLLIDQIGLAPEAVRSFLKAWKCSNDCIRQVQTVYQALLMRRNGEW 303 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++ L Y +G + + L Y+ L + D I Q + + G D+ Sbjct: 304 NDL--LLYQFGLEATCLAEGL---LRYDKLPN-DPAKISQRYQQLPIHSLKELAINGRDL 357 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 ++ G + +L + I +E L ++ +A Sbjct: 358 LQTIDRSSGPWLKEVLTAAEAAVITRKIPNEKEALLAFVQAYLA 401 >gi|314933641|ref|ZP_07841006.1| polyA polymerase [Staphylococcus caprae C87] gi|313653791|gb|EFS17548.1| polyA polymerase [Staphylococcus caprae C87] Length = 400 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 100/406 (24%), Positives = 173/406 (42%), Gaps = 26/406 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD LM + DIDI T+ P+ + IF KT IP Sbjct: 7 ERAKPILDHIQHHGFEAYFVGGSVRDYLMGREIHDIDITTSATPNEIEDIFEKT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R +V F RD D RRDFT+NA+ D Sbjct: 63 IGKEHGTINVVYHHENYEVTTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTVNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K DY G DL+ R I+ +G+ R ED LRI+R RF A K +D+ A Sbjct: 123 SNYKTYDYFEGERDLKERLIRTVGEPRERFEEDALRIIRGLRFQAQLDFKIVDN-TFDAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K ++ LS ERI E+ KL++ N + M FK I ++ Q + Sbjct: 182 RKQIADIQYLSIERIVVELKKLIKGINVAQSFNQMKEIDAFKHI-PFFNSFNM----QRV 236 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLS 309 ++ E++ + ++++ Q L + + + + + N K S Sbjct: 237 HIDEPLEFE----MWIAIMLAQQPITDTLKL---LKISNNEKSKIHTLANLIETLPKVQS 289 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFP 364 ++ + Y K + L L NNL + I +V + + + Sbjct: 290 KSDLIIVIYDNDIKNIKNVLATKETLKKNNLNTPNPLILNERSIEEVYNQLPIHHRKEMA 349 Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G D+++ G + ++L + I + ++ ++ + Sbjct: 350 INGGDIIQHLNTKSGPWLKDVLRQIEVAIITKQIKNTKVEILEWVD 395 >gi|313897877|ref|ZP_07831418.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium sp. HGF2] gi|312957412|gb|EFR39039.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Clostridium sp. HGF2] Length = 454 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 95/448 (21%), Positives = 178/448 (39%), Gaps = 48/448 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K +DS + ++L L + ++ +VGG VRD LM + D DI T P VM +F + Sbjct: 2 KTINDSQIQSVLQLFSTIHKEAWLVGGCVRDMLMGRELHDYDITTDATPYEVMALFQEKG 61 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTIN 125 Y+VIPT + +GT+ ++ + + +ITT R++ T+ R + V FT D D RRDFT+N Sbjct: 62 YRVIPTGLKHGTVTVLVQDEPIEITTYRTESAYTNHRSPEAVRFTPDIDEDLKRRDFTMN 121 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ + D G D+ +TI+ +G A R+ ED LRILR RF I+ + Sbjct: 122 AIAWHPKRGFHDPYHGQADIAKKTIRCVGKASERMQEDALRILRALRFHCTL-HFTIEEE 180 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + A L +S ERI E N++L P + + + + I ++ + Sbjct: 181 TVQAIRTHAHLLSYISRERIREEFNRILLQDYP-DTLQLLKEMRVLDTIAAGYTKLMNKE 239 Query: 246 LSQVIEAEQVFEWKIDSLLR---------FIVLISWQDKKSILSM--------------- 281 + VF +L ++ K + ++ Sbjct: 240 QNNPWHIYDVFTHTDVALNHTKGMALEGKLAIIFHDTGKPACETLDADGISHYYGHAQKS 299 Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 KK ++ + T +++ + +++ A L + + Sbjct: 300 VELARCWLKKLHYDNRTIQRVLRCIAYHDYNLTPKKSTLRRYLSKFDNQLEDALLALDVQ 359 Query: 335 LHYNNLTHQDTC------------FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382 L + + +L + ++ + G D++ +G+ GK++G Sbjct: 360 LADQLAKNPEPAANGVRIIRQCKELLLHMHAEEEPLSLQTLAVNGRDMMDFGL-CGKQIG 418 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRK 410 L + + +++ L L + Sbjct: 419 TALHMLLDYAMQDPSRNTKKQLIEELNR 446 >gi|223043110|ref|ZP_03613157.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus capitis SK14] gi|222443321|gb|EEE49419.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus capitis SK14] Length = 400 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 99/406 (24%), Positives = 173/406 (42%), Gaps = 26/406 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD LM + DIDI T+ P+ + IF KT IP Sbjct: 7 ERAKPILDHIKHHGFEAYFVGGSVRDYLMGRDIHDIDITTSATPNEIEDIFEKT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R +V F RD D RRDFT+NA+ D Sbjct: 63 IGKEHGTINVVYHHENYEVTTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTVNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K DY G DL+ R I+ +G+ R ED LRI+R RF A K +D+ A Sbjct: 123 SNYKTYDYFEGERDLKERLIRTVGEPRERFEEDALRIIRGLRFQAQLNFKIVDN-TFDAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K ++ LS ERI E+ KL++ N + M FK I ++ Q + Sbjct: 182 RKQIADIQYLSVERIVIELKKLIKGINVAQSFNQMKEIDAFKHI-PFFNSFNM----QRV 236 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLS 309 ++ E++ + ++++ Q L + + + + + N + S Sbjct: 237 HIDEPLEFE----MWIAIMLAQQPITDTLKL---LKISNNEKSKIHTLANLIKTLPQVQS 289 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFP 364 ++ + Y K + L L NNL + I +V + + + Sbjct: 290 KQDLIIVIYDNDIKNIKNVLATKETLKKNNLNTPNPLILNERSIEEVYNQLPIHHRKEMA 349 Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G D+++ G + ++L + I + ++ ++ + Sbjct: 350 INGGDIIQHLNTKSGPWLKDVLRQIEVAIITQQIKNTKVEILEWVD 395 >gi|299538590|ref|ZP_07051873.1| CCA-adding enzyme [Lysinibacillus fusiformis ZC1] gi|298726177|gb|EFI66769.1| CCA-adding enzyme [Lysinibacillus fusiformis ZC1] Length = 390 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 174/396 (43%), Gaps = 25/396 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L + ++ IVGGAVRD+L++ D+D+AT LP+ V +F KT + I + Sbjct: 13 VIEQLEQAGFEAVIVGGAVRDALLDRPAHDVDVATNALPEEVKTVFQKT----VDIGIQH 68 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ +I ++TT R+D TD R + V F R K D RRDFT+NA+ + G Sbjct: 69 GTVLVIVPAGPVEVTTYRTDGEYTDHRRPQNVHFVRSLKEDLQRRDFTMNAIAMRRDGSF 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DY GG D+ R I+ +G+A R ED LR+LR RF A + I+++ L A + Sbjct: 129 VDYYGGQQDIEKRVIRAVGEAEKRFAEDALRMLRAIRFSAQL-DFTIEANTLAAIQQRAG 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L ++ ERI +E++KL + I + + G+ + D Q Q + + Sbjct: 188 DLSFIAKERIKAELDKLWVGQTVFGGIQKLEDSGLTAYLTGDFQTA---QWHNFQTKDAL 244 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 W +LL+ + + + L + F+ S K + Sbjct: 245 LGWAYFALLQGTA---------WREVVRDYRLSNKEMAFINSVLTAYDALKDGWTN---R 292 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-G 374 ++ Y ++ + A + Q + I ++ + + + + G D++K+ G Sbjct: 293 HYFYYTEQELEAAQYFAQLRQLDASIPQQS--IRELQAKLPIQHRQELVVNGADLLKWSG 350 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G V L ++ Q +E + L + Sbjct: 351 KKGGPWVKAALEDMLTAILHYELQNDREQIKSWLEQ 386 >gi|320102813|ref|YP_004178404.1| polynucleotide adenylyltransferase region [Isosphaera pallida ATCC 43644] gi|319750095|gb|ADV61855.1| Polynucleotide adenylyltransferase region [Isosphaera pallida ATCC 43644] Length = 471 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 90/409 (22%), Positives = 175/409 (42%), Gaps = 17/409 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ +L + GG VRD+L+ L D D+AT P+RV+++F +T + Sbjct: 35 AVEVVEILKNQGYLAYFAGGCVRDTLLGLIPSDYDVATNATPERVLKLFRRT----VNVG 90 Query: 75 ISYGTIKIIC--RKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +S+G ++++ ++ T RSD + +DGR V D K D+LRRDFTIN ++ D Sbjct: 91 LSFGVVRVVAPKGGWDVEVATFRSDGVYSDGRRPDSVTYGDAKEDALRRDFTINGMFMDP 150 Query: 132 --QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +VID+VGG +DL R ++ IG+ R ED LR++R RF A + + +D A Sbjct: 151 LDHDRVIDFVGGRDDLARRILRAIGNPRDRFTEDKLRLIRAVRFAARF-DLTMDPLTEQA 209 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ- 248 L +++ ERI E K+L + A+ + G+ + ++ + Sbjct: 210 IRDMADQLGVVAFERIAQEFRKMLAHSSRARAVSLCRDLGLMPTLLPNLPHEAYQPQVNW 269 Query: 249 -VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF---LISFFNCNFN 304 V+ + + D ++++ K+ L L + + Sbjct: 270 LVLPTLSALPDDAPFETALATVCNRLDPTTLIANLKRLRLSNPEIKRIAWLAEHRHDLDH 329 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-KPLF 363 + L +K++ +I + ++ T + + D+ P Sbjct: 330 ARELPRHRLKRVLAHPHAGELIVLARAEAIARGDDATLANIDWADAYRHDLPEGPLDPPL 389 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++G D+V G+ PG + +L + ++ ++ L+R+ + Sbjct: 390 LVSGHDLVALGVKPGPRFAALLEAIRDRQLDG-LITDRDQALDLIRRQV 437 >gi|317489811|ref|ZP_07948308.1| poly A polymerase head domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325829889|ref|ZP_08163347.1| tRNA adenylyltransferase [Eggerthella sp. HGA1] gi|316911060|gb|EFV32672.1| poly A polymerase head domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325488056|gb|EGC90493.1| tRNA adenylyltransferase [Eggerthella sp. HGA1] Length = 465 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 101/446 (22%), Positives = 169/446 (37%), Gaps = 50/446 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + L L ++ IVGG VRD+L+ DIDIAT V R+F Y+ T Sbjct: 20 LAALDALENAGFETWIVGGYVRDALLGRPSSDIDIATQAHWQDVQRVFEGQGYRTHETGT 79 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ +I ++ ++TT RSD D R+ +V F R D RRDFT+NAL Sbjct: 80 AHGTLTVIVDEQALEVTTYRSDGAYADARHPNQVSFVRTIAEDLARRDFTMNALAYHPAR 139 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D GG DL R I+ +GD R ED LR+LR RF A G ID + + Sbjct: 140 GLFDPYGGHADLEARIIRAVGDPDRRFSEDALRMLRACRFAAELG-FAIDPNTFEGMLAN 198 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K L +S+ERI E+ +LL ++ A+ + + + ++ + + Sbjct: 199 KGLLPRISTERITHELQRLLLGEHAGRALTATVD--VLAAVLPELVAMKGFEQRTPYHIY 256 Query: 254 QVFEW--------KIDSLLRFIVLISWQDKKSILSMAK---------------------- 283 V E L+R+ L K + + Sbjct: 257 DVLEHTARVLDGVPPYPLVRWAALFHDMGKPAAFFTDEDGTGHFYGHAAISVMLARGIMG 316 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + +L +++ + + + +K+ G + L + Q Sbjct: 317 RLALSSAFAAQVLTLVERHDDVIDRTPKAVKRALSRLG--GNVELFAALCDLKRGDARGQ 374 Query: 344 ---------DTCFILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 D + ++LS+I + + G DV++ G+P G VG L Sbjct: 375 APRCIDRVSDADELERILSEILAADEAFSLKKLAIDGRDVIELGVPQGPLVGLALSDALD 434 Query: 391 EWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ L + + A + Sbjct: 435 AVMDERIDNKACALRAFIEEWRAEHE 460 >gi|258616510|ref|ZP_05714280.1| poly A polymerase [Enterococcus faecium DO] Length = 402 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLSEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLGKISVERINVEFIKMLLGNERAAGIHAFIETECY-ICCPGLKEEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + ++T ++ Sbjct: 246 PSVPLKEESQAWALLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ ++++ D + + + + G +++ Sbjct: 306 FE--LYFLGKKHALQVEELM--IYFDETPQMDA--VGESYDRLPIKSLSELAVDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 398 >gi|242373766|ref|ZP_04819340.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis M23864:W1] gi|242348503|gb|EES40105.1| tRNA CCA-pyrophosphorylase [Staphylococcus epidermidis M23864:W1] Length = 404 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 98/406 (24%), Positives = 169/406 (41%), Gaps = 26/406 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL+ + + ++ VGG+VRD LM + DIDI T+ PD + IF KT IP Sbjct: 11 ERAKPILNQIQQHGFEAYYVGGSVRDYLMGREIHDIDITTSATPDEIEDIFDKT----IP 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R +V F RD D RRDFTINA+ D Sbjct: 67 IGKEHGTINVVYNDENYEVTTFRAEEDYVDHRRPSEVHFVRDLYQDVQRRDFTINAIAMD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 DY G +D++ + I+ +G A R ED LRI+R RF + + + ++ A Sbjct: 127 TNYNTYDYFDGEDDIKAKQIRTVGVARERFEEDALRIIRGLRFQSQLNFQIV-NETFEAM 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ LS ERI E+ KL+ N + +M F I + Sbjct: 186 ATQISDIQYLSIERIVVELKKLINGINVSESFKNMKEIQAFNYI----------PFFKAF 235 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTLS 309 +VF + S +I L+ ++ I K + + + +F N K S Sbjct: 236 NMNKVFINEPLSFEIWIALM--LAQQPIEDSLKALKISNLEKSNIQNFVNLIKILPKVES 293 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-----ILQVLSDIIHWKKPLFP 364 ++ + Y Y + L L N L + I + + + + Sbjct: 294 KQDLITVVYDYNLSDIECVLTANDTLKENGLEIANPLIINATSIKETDAQLPIHTRKEMD 353 Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G D++K + G + ++L + I ++ ++ + Sbjct: 354 VNGGDIIKHLQVKSGPWLKDVLRQIELAIITQQMNNTKLEILEWVD 399 >gi|304440633|ref|ZP_07400517.1| possible tRNA adenylyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370820|gb|EFM24442.1| possible tRNA adenylyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 441 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 107/438 (24%), Positives = 187/438 (42%), Gaps = 45/438 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +L+N+ ++LN +S VGGAVRD ++ S+ D DI T PD + + Y I Sbjct: 6 SDELMNLFNILNSH-YESYFVGGAVRDMILGYSIHDYDITTLATPDEIRKTLK--MYTTI 62 Query: 72 PTSISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 S GT+ + DIT R + + +V+F++D K D RRDFTINA+ Sbjct: 63 DIGGSLGTVLALTENYSVDITPFRLDGEYKNFRKPEEVIFSKDVKEDLKRRDFTINAILY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + G+ IDYVGGL DL+N+ I+ IGDA+ RI ED LRILR RF Y + I++ A Sbjct: 123 N--GEFIDYVGGLRDLKNKIIRPIGDANIRIKEDALRILRAVRFATKY-DFEIEASLESA 179 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I LK +S ERI E K+L KN + + IF I ++ + + Sbjct: 180 IISNVNLLKNISFERIRDEFVKILLDKNVKKGMNLLRKLHIFDIILPEILQTYDYDQNSK 239 Query: 250 IEAEQVFEWKIDSL--------LRFIVLISWQDKKSILSM-------------------- 281 +++ ++ + +R L+ K + SM Sbjct: 240 YHENNLYDHILNVVGYSPEVLEVRLAALLHDIGKPATFSMGDDGVAHYFGHEIESSKIAK 299 Query: 282 --AKKFSLPREIRYFLISFFNCNFNQKT-LSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 ++F EI ++ + ++ ++ +++ G++ ++ + +A Sbjct: 300 EVLRRFKFSNEIIKKVVILIENHMTFQSVMTDRALRRQIRKVGNENILDLYDLMVADRLG 359 Query: 339 NLTHQDTCFILQVLSDIIHW------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 + + I + K ++G D+++ G PG + IL + Sbjct: 360 TMKSRSADDIYTRRDRVEELLKEPTSKPKFLNISGSDLIEMGFTPGPEFKKILNDLTEMV 419 Query: 393 INSSFQLSQEDLHHLLRK 410 ++ + E L ++ + Sbjct: 420 LDDPEINTNEKLRQIVER 437 >gi|29840677|ref|NP_829783.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC] gi|29835027|gb|AAP05661.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC] Length = 410 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 111/407 (27%), Positives = 181/407 (44%), Gaps = 17/407 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL L ++ VGG VRD LM ++DIDIAT P V IF+ T + Sbjct: 7 EAAKKILLKLRNSGYQAYFVGGCVRDMLMGKPIEDIDIATNAPPVIVSTIFTDT----LS 62 Query: 73 TSISYGTIKIICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 ++G I + + F++ T RS + DGR+ + V K D+LRRDFTIN +Y D Sbjct: 63 LGAAFGIIVVKENNRLFEVATFRSDENYEDGRHPERVVFSSMKEDALRRDFTINGMYYDP 122 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + K+ D V G DL R ++ IG R ED LRILR RF + G ++D A Sbjct: 123 FEEKLFDLVEGRRDLEKRVVRAIGHPKLRFSEDKLRILRAVRFSSSLG-FSLDPATERAI 181 Query: 191 IKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 IK L +S ERIW E+ K+L+ KNP A+ + I IF +++++ L Sbjct: 182 IKEAPTLVNSVSPERIWQELRKMLK-KNPYEALSLLIKLKIITVIFPELRDVPPSLLRVN 240 Query: 250 IEAEQVFEWKIDSLLRFIV-LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 IE + + F++ L +++ + + + + ++ + + Sbjct: 241 IEFAKKLNPLEFPEICFLLPLFQGVSEEAACVAFTRLRVSNKDLKLIQLWYQALPQFQNI 300 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ----DTCFILQVLSDIIHWKKPLFP 364 S + +L + L +F A+ + Q + L I K P Sbjct: 301 SNNRVFWAHFLASPTAHLF-LSLFSAIQKDPSKQQHFIARVQELETRLEQFILRIKTSSP 359 Query: 365 L-TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 L + D++ GI PG+ +G++L + I + +E + LL++ Sbjct: 360 LVSAPDLISRGIAPGRLLGDLLREAETLSIENECH-DKEKILLLLKE 405 >gi|283770530|ref|ZP_06343422.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus H19] gi|283460677|gb|EFC07767.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus H19] Length = 411 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 193 CTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEHLDMNQINVT- 250 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 251 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQAKDINQYIQIMNALPSIIT 300 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 301 KEQLKMFVYDYDTNLIKNVMVAANVLKANDIQGHEPLIVNLQTIDETLHCLPMHNRKDMM 360 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 361 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|268610303|ref|ZP_06144030.1| poly A polymerase family protein [Ruminococcus flavefaciens FD-1] Length = 439 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 111/444 (25%), Positives = 186/444 (41%), Gaps = 51/444 (11%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + D+ IL L ++ VGG VRD++M S D DI T LP++V+ F YK Sbjct: 1 MNGKDVDEILERLESCGFEAYTVGGCVRDTIMGRSAHDTDITTNALPEQVIAAFD--GYK 58 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINAL 127 VIPT + +GT+ I+ ++ITT R D D R + V FT D RRDFT+NA+ Sbjct: 59 VIPTGLKHGTVTILKNSVPYEITTYRIDGEYKDSRRPETVEFTASITEDLARRDFTMNAI 118 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D+ G + D GG D+ N I+ +GD R ED LRI+R RF A G +I+ Sbjct: 119 AMDRHGNIADPFGGKEDIENGIIRCVGDPVQRFTEDALRIMRAVRFAAQLG-FSIEEKTA 177 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQL 246 A K+ LK +S ERI SE++K+L + + + + I I + + I DQ Sbjct: 178 EAVHSMKERLKNISMERIRSELDKILCGRYCVEVL--LEYSDIITTIIPEFEPSIGFDQH 235 Query: 247 SQVIEAEQVFEWKIDSL---------LRFIVLISWQDKKS-------------------- 277 S V+E + ++ +R +L K + Sbjct: 236 SP-YHRYDVWEHTVRAVGFAPQDNVKMRTALLFHDIAKPACATFDANCRGHFKKHGPVGA 294 Query: 278 --ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA--KLKIFL 333 + K+ E + + + ++K +KK+ GD + +LK Sbjct: 295 EMTKEIMKRMKYDGETMTYAVMLIARH-SKKVFDRIAVKKMMADIGDDLFFELMELKKCD 353 Query: 334 ALHYNNLTHQDTCFILQVLSD-------IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 L N+ ++ +++ + ++G+D++ G+ G+ VG L Sbjct: 354 NLAKNDFVFEENELFDRLMDEGRLLIENNECRGLRNLAVSGNDLMAIGLK-GRDVGAALK 412 Query: 387 HCKQEWINSSFQLSQEDLHHLLRK 410 + ++ L + ++ Sbjct: 413 ELLTLVLEEKLPNIKDTLINYAKQ 436 >gi|257867673|ref|ZP_05647326.1| poly A polymerase [Enterococcus casseliflavus EC30] gi|257874001|ref|ZP_05653654.1| poly A polymerase [Enterococcus casseliflavus EC10] gi|257876580|ref|ZP_05656233.1| poly A polymerase [Enterococcus casseliflavus EC20] gi|257801756|gb|EEV30659.1| poly A polymerase [Enterococcus casseliflavus EC30] gi|257808165|gb|EEV36987.1| poly A polymerase [Enterococcus casseliflavus EC10] gi|257810746|gb|EEV39566.1| poly A polymerase [Enterococcus casseliflavus EC20] Length = 404 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 87/404 (21%), Positives = 167/404 (41%), Gaps = 16/404 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ +L + ++ VGG+VRD+++ + D+DIAT+ P + +F +T I Sbjct: 11 AEAAPLLKKIEAAGYEAYFVGGSVRDTILGQPIHDVDIATSAFPAEIKALFPRT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + ++ITT R++ D R KV F R K D RRDFTINAL Sbjct: 67 IGIEHGTVLVLWEQAQYEITTFRTEAAYQDYRRPDKVDFVRSLKEDLKRRDFTINALALQ 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G +ID GL D+ N+ ++ +G R ED LR++R RF + G ++++ L A Sbjct: 127 EDGVIIDLFDGLADIDNQILRAVGHPQERFHEDALRMMRGLRFVSQLG-FVLETETLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 L +S ERI E KLL + A+ + I+ + L ++ Sbjct: 186 HANHALLGKISVERIMIEFVKLLLGNHRNQALRALVETEC--YIYCPGLREYGEALLRMA 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + + ++ +++ S K + + + + + ++ Sbjct: 244 DLPAIPLENETAAWVLLIDQMGLAPEAVRSFLKAWKCSNDCIRQVHTAYQALLARRNGEW 303 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++ Y +G + + L + D I Q + + G D+ Sbjct: 304 NDLV--LYQFGLEATC----LAEGLLRYDNQPNDPAKISQRYQQLPIHSLKELAINGRDL 357 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 ++ G + +L + I +E L ++ +A Sbjct: 358 LQTIDRSSGPWLKEVLTAAEAAVITRKIPNEKEALLAFVQAYLA 401 >gi|302338404|ref|YP_003803610.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta smaragdinae DSM 11293] gi|301635589|gb|ADK81016.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta smaragdinae DSM 11293] Length = 451 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 106/436 (24%), Positives = 173/436 (39%), Gaps = 50/436 (11%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + + + +VGGAVR+ + D D AT P V+ +F +VIPT I +GT Sbjct: 17 EIFFQRGRECYLVGGAVRNMVAGWKPSDWDFATDAPPSEVISMFR----RVIPTGIKHGT 72 Query: 80 IKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ-GKVI 136 + ++ +++ +++TT R D +DGR V +T D D RRDFTINA+ + GK+I Sbjct: 73 VTVLFKQEKYEVTTFRIDADYSDGRRPDAVTYTGDIYEDLSRRDFTINAMAINLNTGKLI 132 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D G D++ + I+ IGD R ED LR+LR RF A G + ++ A + Sbjct: 133 DPHDGRADIKRKLIRAIGDPQIRFAEDGLRLLRACRFTAQLGFR-LEEQTEKALSTCRFQ 191 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLS 247 L +S ERI EI K+L+A+ P + M GI +I ++ S D L Sbjct: 192 LSNVSLERIRDEIVKMLDAEKPSIGFLVMEKSGILSDILPELSRCRGINQKGFHSFDVLD 251 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISW----------------------QDKKSILSMAKKF 285 + A L+R L + +K + ++ Sbjct: 252 HSLYACDG-APADRLLIRLAALFHDTGKAVTLSTDEDGFPTFHRHEIESEKIAREVMQRL 310 Query: 286 SLPREIRYFLISFFNCNFNQKT--LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + + T S +++ G + + + LA Y Sbjct: 311 RFSNAQTDAVCHLVKHHMFHYTDDWSDAAVRRFISRVGREHISDLFALRLADQYGMTART 370 Query: 344 DTC--------FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 I VL + + G D++K GIP G +G IL + ++ Sbjct: 371 MEATNLTSFAKRIEAVLDKDMALTLRDLAVNGKDLMKVGIPAGPLLGTILDQLLEAVLDD 430 Query: 396 SFQLSQEDLHHLLRKL 411 +E L + + L Sbjct: 431 PEMNKKERLLAIAKSL 446 >gi|257878003|ref|ZP_05657656.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,230,933] gi|257881211|ref|ZP_05660864.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,502] gi|257889798|ref|ZP_05669451.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,410] gi|257892265|ref|ZP_05671918.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,408] gi|260559053|ref|ZP_05831239.1| polynucleotide adenylyltransferase [Enterococcus faecium C68] gi|293563404|ref|ZP_06677853.1| cca-adding enzyme [Enterococcus faecium E1162] gi|293568062|ref|ZP_06679400.1| cca-adding enzyme [Enterococcus faecium E1071] gi|294621944|ref|ZP_06701092.1| cca-adding enzyme [Enterococcus faecium U0317] gi|257812231|gb|EEV40989.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,230,933] gi|257816869|gb|EEV44197.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,502] gi|257826158|gb|EEV52784.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,410] gi|257828644|gb|EEV55251.1| polynucleotide adenylyltransferase [Enterococcus faecium 1,231,408] gi|260074810|gb|EEW63126.1| polynucleotide adenylyltransferase [Enterococcus faecium C68] gi|291589283|gb|EFF21093.1| cca-adding enzyme [Enterococcus faecium E1071] gi|291598493|gb|EFF29562.1| cca-adding enzyme [Enterococcus faecium U0317] gi|291604665|gb|EFF34150.1| cca-adding enzyme [Enterococcus faecium E1162] Length = 402 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLGKISVERINVEFIKMLLGNERAAGIHAFIETECY-ICCPGLKEEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + ++T ++ Sbjct: 246 PSVPLKEESQAWALLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ ++++ D + + + + G +++ Sbjct: 306 FE--LYFLGKKHALQVEELM--IYFDETPQMDA--VGESYDRLPIKSLSELAVDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 398 >gi|187736125|ref|YP_001878237.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Akkermansia muciniphila ATCC BAA-835] gi|187426177|gb|ACD05456.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Akkermansia muciniphila ATCC BAA-835] Length = 464 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 99/450 (22%), Positives = 176/450 (39%), Gaps = 49/450 (10%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M+ ++ ++ +L+ VGG VRD L+ SV+DIDIAT+ PD V+ Sbjct: 1 MIRFMEG-ILLRKAAEDVARVLSGAGHTVYFVGGCVRDRLLGYSVKDIDIATSARPDEVL 59 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119 R+F ++G + + F++ T R D DGR + V D + D+ R Sbjct: 60 RLFPDA----WEVGAAFGVVLVRREGFSFEVATFRRDGSYRDGRRPEDVCFTDAEEDARR 115 Query: 120 RDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RDFT+N L+ D G+V+DYVGG+ D+R R ++ IG+ R ED LR++R RF Sbjct: 116 RDFTMNGLFEDPFSSPPGRVVDYVGGVEDIRARVLRCIGEPDRRFEEDSLRLMRAVRFAV 175 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 E ++ + + + L +S ERI E++++L + + + G+ K + Sbjct: 176 T-REVQVEKETCSSIFRNAPLLARISPERIREELDRILLSPGRKRGVEMLVETGLMKHVI 234 Query: 236 LDVQEI-SLDQLSQVIEAEQVFEWKIDSL-------------LRFIVLISWQDKKSILS- 280 ++ ++ Q Q V+ + L L VL+ K Sbjct: 235 PEIYDMIGCTQPPQWHPEGDVYTHTLMMLDALGRDGSPVSLKLALGVLLHDIGKPPCRQV 294 Query: 281 ---------------------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 + ++ + + S + + L Sbjct: 295 DETGRIRFSGHDKEGSSMARVILRRLKYSNAVVDAVCSMVERHMRFINVRQMRKSTLRMF 354 Query: 320 YGDKVMIAKLKI-FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL-TGDDVVKYGIPP 377 +L++ L +N + F+ + + PL TG D+V G+ P Sbjct: 355 MNAPHFRDELELHRLDCLSSNGLMDNWQFVRDFMDSYRNAPLVPPPLVTGRDLVNLGLSP 414 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 G G L ++ + + + +E L L Sbjct: 415 GPDFGKWLSRLQELQLEGTLRTREEALLQL 444 >gi|198422855|ref|XP_002122885.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1 [Ciona intestinalis] Length = 488 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 117/403 (29%), Positives = 187/403 (46%), Gaps = 14/403 (3%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + L K + GGAVRD L+ + D+D+ATT P ++ +F K + Sbjct: 88 LFTDEFRFVQHLFEKENHELRFCGGAVRDLLLGKAPHDLDLATTATPTEMIEMFRKNDVR 147 Query: 70 VI-PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +I S+GT+ ++ F+ITTLR D +TDGR A V +T+DW D+ RRD T N+L+ Sbjct: 148 LICENGWSHGTVTCRVEEQNFEITTLRIDRVTDGRRALVEYTKDWYLDASRRDLTCNSLF 207 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN--IDSDG 186 G VIDY G++D++++ ++F+GD RI EDYLRILR+FRFF E+ D Sbjct: 208 LTMSGNVIDYFNGISDVKDKKVRFVGDPALRIQEDYLRILRYFRFFGRLKEEPAIPDEST 267 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L K GL ++ ER W E +L + + + MY GI K++ L +++ L++ Sbjct: 268 LQEITKYGSGLGGVAGERKWVEFTMILNGRLLVLIMKMMYRCGILKQLGLP-EQVDLEEF 326 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 V + F +LL +L D +S+ K + F+I K Sbjct: 327 ENVYNRSKHFSPNHMTLL-TSILKDKTDLDHFMSVIKCSRYEYNVAKFIIEHRALYRPDK 385 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + L Y + + + L + ++ H+ P FPL Sbjct: 386 DMISVYVDLLVDSYKQDKNLVNVFMELMKYIGQA---------DIMDYFTHFNIPTFPLK 436 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G + + GK VG + Q+W S ++L E L L+ Sbjct: 437 GGILKERFGMKGKPVGIAINFAFQKWKESRYKLDSEALLQLIE 479 >gi|260583471|ref|ZP_05851219.1| poly A polymerase [Granulicatella elegans ATCC 700633] gi|260158097|gb|EEW93165.1| poly A polymerase [Granulicatella elegans ATCC 700633] Length = 403 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 99/409 (24%), Positives = 175/409 (42%), Gaps = 38/409 (9%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + ++ L ++ VGG+VRD L++ + D+DIAT+ P V IFS T + Sbjct: 11 EALPVMQQLVDAGYEAYFVGGSVRDMLLHKPISDVDIATSATPQEVKEIFSHT----VDV 66 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ +I K+ +++TT R++ D R+ KV F R + D RRDFTINAL Sbjct: 67 GIEHGTVMVIHHKEGYEVTTFRTEEGYEDFRHPDKVTFVRSLEEDLKRRDFTINALAIGI 126 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 ++ID+ G+ DL + I+ +GDA R ED LR+ R RF G + I+ + A Sbjct: 127 DDQLIDFFDGIGDLERQCIRCVGDAKERFNEDALRMFRAVRFVGQLGFQ-IEENTKNAIS 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK---------EIFLDVQEIS 242 K L ++ ER+ E K++++ +A+ G+++ EI L + E Sbjct: 186 LLKMNLSKVAVERMKVEFEKMIQSSYRKDALKLFVETGLYQACPLFDGKGEILLKLAEFP 245 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE-IRYFLISFFNC 301 + ++S + Q + +D L K + + K + E IR L+ + Sbjct: 246 IKEMSVL----QAWILFVDEL--------KLSDKEVTHLLKSWKSSNEQIRDVLVGYKTY 293 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 ++ F+L D ++ L N + + Sbjct: 294 RARKEEEWN------FFLAYDCSYEVASEVEQLLIAQN-KSTSIKGLEATYQSLPIRSMN 346 Query: 362 LFPLTGDDVVKYGI--PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 L G D+++ G +G +L ++ + S + E L + Sbjct: 347 DIQLNGHDIIRILKLEKKGPIIGQVLKTVEKMILEQSIENDAEILEAYV 395 >gi|293556746|ref|ZP_06675309.1| cca-adding enzyme [Enterococcus faecium E1039] gi|291601078|gb|EFF31367.1| cca-adding enzyme [Enterococcus faecium E1039] Length = 402 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLAEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLGKISVERINVEFIKMLLGNERAAGIHAFIETECY-ICCPGLKEEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + ++T ++ Sbjct: 246 PSVTLKEESQAWTLLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRETGALEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ ++++ D + + + + G +++ Sbjct: 306 FE--LYFLGKKHALQVEELM--IYFDETPQMDA--VGESYDRLPIKSLSELAVDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 360 ETGKKPGKWVSEALQLAEKAVVEQRIKNDKKQVLDFLSK 398 >gi|257896203|ref|ZP_05675856.1| poly A polymerase [Enterococcus faecium Com12] gi|293379555|ref|ZP_06625697.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium PC4.1] gi|257832768|gb|EEV59189.1| poly A polymerase [Enterococcus faecium Com12] gi|292641864|gb|EFF60032.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecium PC4.1] Length = 402 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 170/399 (42%), Gaps = 16/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R + D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLEEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S ERI E K+L I + ++E + L + E Sbjct: 188 NHELLGKISVERINLEFIKMLLGNERSAGIHAFIKTECY-ICCPGLREEG-EALLRFAEL 245 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 V + ++ + I S K + ++ + + +KT + Sbjct: 246 PSVPLKEESQAWTLLISQLDLKENEIRSFLKSWKCSNQMIKDVQALVQGLRQRKTGVLEP 305 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G K + ++ +++ D + + + + G +++ Sbjct: 306 FE--LYFLGKKHALQVEELMT--YFDETPQMD--VVEESYDRLPIKSLSELAVDGKILLE 359 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G PGK V L ++ + + ++ + L K Sbjct: 360 ESGKKPGKWVSEALQSAEKAVVEQRIENDKKQVLDFLSK 398 >gi|282916724|ref|ZP_06324482.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus D139] gi|282319211|gb|EFB49563.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus D139] Length = 411 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 193 CTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEHLDMNQINVT- 250 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 251 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQAKDINQYIQIMNALPSIIT 300 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 301 KEQLKIFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHCLPMHNRKDMM 360 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 361 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|295104303|emb|CBL01847.1| tRNA nucleotidyltransferase/poly(A) polymerase [Faecalibacterium prausnitzii SL3/3] Length = 444 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 99/425 (23%), Positives = 174/425 (40%), Gaps = 54/425 (12%) Query: 35 AVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTL 94 VRDSL+ + D D+ T+ LP +VM +F + IPT + +GT+ I + ++ TT Sbjct: 29 CVRDSLLGRTAHDWDLCTSALPQQVMELFGTE--QCIPTGLQHGTVTIKYGGQLYETTTF 86 Query: 95 RSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKF 152 R++ TDGR+ +V F D + D RRDFTINA+ + ++D GG DL+N ++ Sbjct: 87 RTEGSYTDGRHPDEVQFVPDVREDLARRDFTINAMAYNAAEGLVDPFGGQKDLQNGLLRA 146 Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKL 212 +G+ R ED LRILR +RF A +G + A+ + L +S+ERI E+ KL Sbjct: 147 VGEPQQRFTEDALRILRLYRFAARFGFALD-AATARAARQLAPHLDCISAERIQEELAKL 205 Query: 213 LEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272 L A P + + + ++ +L+ V++A + + +R+ L+ Sbjct: 206 LAAPQPGAYL----EPAVLAVVLPELTPAALEAAKPVVDA--CPAGEENLPVRWAALLGA 259 Query: 273 QDKKSILSMAKKFSLPREIRYFLI-------------SFFNCNFNQKTLSIP-------- 311 + + K+ SF + + +++ P Sbjct: 260 LGESDTRRVLKRLRCSNACIEETAVLVRETAGEGVCGSFLLGHESGHSIARPTACGSRVP 319 Query: 312 --------------------EIKKLFYLYGDKVMIAKLKIFLALH--YNNLTHQDTCFIL 349 I++L YG + + AL Sbjct: 320 PQRTVLGETPAHAPERASDIHIRQLLGRYGLCTVERLCALCAALRPQAAPACALAAQRAR 379 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 Q+ +D + + + G D++ GIP G + +L I + + + L + Sbjct: 380 QLEADGVCCRVSQLAVNGRDLMAAGIPAGPALRRVLEALLDGVIRAEYPNEKPALLAAAQ 439 Query: 410 KLIAS 414 K+IAS Sbjct: 440 KIIAS 444 >gi|325681365|ref|ZP_08160891.1| HDIG domain protein [Ruminococcus albus 8] gi|324106855|gb|EGC01145.1| HDIG domain protein [Ruminococcus albus 8] Length = 444 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 101/435 (23%), Positives = 176/435 (40%), Gaps = 48/435 (11%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L +L+K E ++ IVGG VRDSLM+ S D D+ T P ++RIF+ + I T + + Sbjct: 12 VLDVLSKNEYEAYIVGGCVRDSLMDKSPHDYDVCTNCTPSEMVRIFNN--FHTIETGLKH 69 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ +ITT RSD TD R V F + + D RRDFTINA+ + + Sbjct: 70 GTLTVMSEHMPVEITTYRSDGEYTDHRRPDTVKFETELREDLRRRDFTINAMCFNPDEGI 129 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D G DL R I+ +G A R ED LRI+R RF A + +I+ + +A K Sbjct: 130 VDMFEGEKDLELRVIRCVGKAEERFEEDALRIMRALRFAAVL-DFSIEENTSLAMRKKAH 188 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L +S+ERI++E+ KL+ K + + + I ++ + + V Sbjct: 189 LLNAISAERIFTELKKLICGKAARRIL--LEYSDLIALIIPEIAPCIGCAQNNIHHCYDV 246 Query: 256 FEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMAKKF 285 +E + + LR +L K + + Sbjct: 247 YEHICRSVESIEPNDELRLTMLFHDIGKPQKKTTDEDGQDHFKLHQLASADIAEQVLTRL 306 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 ++ + S + N+ +K+ Y A LK+ A + Sbjct: 307 KSSKKTLDMVTSLVREHDNRVPPKRRSLKRFIAKYDYDFFEAWLKVRRADTLAQSDYMRA 366 Query: 346 CFILQV----------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + ++ +D+ K + G DV+ G G ++ +L I+ Sbjct: 367 EKLAELDELARLGEEIKADMCCLKVTDLAINGHDVMSMGYK-GAEIKTVLNFALDAVIDE 425 Query: 396 SFQLSQEDLHHLLRK 410 + + L +++ Sbjct: 426 VSENEHDTLMDYVKE 440 >gi|311068759|ref|YP_003973682.1| tRNA CCA-pyrophosphorylase [Bacillus atrophaeus 1942] gi|310869276|gb|ADP32751.1| tRNA CCA-pyrophosphorylase [Bacillus atrophaeus 1942] Length = 397 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 100/398 (25%), Positives = 176/398 (44%), Gaps = 16/398 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L+ L + ++ VGGAVRDS M ++ D+DIAT P+ V R+F +T + Sbjct: 8 ALPVLNTLIEAGHQAYFVGGAVRDSYMKRAIGDVDIATDAAPNEVERLFKRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R +V F + D RRDFTINA+ Sbjct: 64 KEHGTIIVLWEDETYEVTTFRTESDYQDYRRPSEVHFITSLEEDLKRRDFTINAMAMKTD 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++IDY GG D+ ++ I+ +G R ED LR+LR RF + G + + + Sbjct: 124 GELIDYFGGRQDIDHQLIRTVGKPEDRFQEDALRMLRAIRFMSQLG-FALSEETAATIER 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ L+ +S ER E KLL+ K+ +A+ M G+F+E+ + + L E Sbjct: 183 SRSLLRYVSVERKTVEFEKLLQGKSCSSALRMMVKTGLFEEL-PGFSDKK-EHLLYASEC 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + L I++ K KK+ LP ++ + T Sbjct: 241 PFSLLTEREELWTAILVYLKISAKEQTPFLKKWKLPGKV------IKEASRIADTFYQEL 294 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 Y G+K +I+ +KI + + + + + + +TG D++ Sbjct: 295 DALSMYQAGEKALISAVKIKMLSETKQVDKEKLEAVRKEYRSLPIKSLKDLDITGQDLLN 354 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P GK V L +Q + ++ L L+ Sbjct: 355 VRNRPAGKWVSEELQRIEQAVVTGKLSNQKKHLEEWLK 392 >gi|332654007|ref|ZP_08419751.1| poly A polymerase [Ruminococcaceae bacterium D16] gi|332517093|gb|EGJ46698.1| poly A polymerase [Ruminococcaceae bacterium D16] Length = 437 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 92/437 (21%), Positives = 165/437 (37%), Gaps = 47/437 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + +L+ L ++ +VGG VRD L D D AT+ P+ +M + Sbjct: 6 DPRALEVLARLRASGYQAVLVGGCVRDFLRGKEPHDYDAATSARPEEIMSAC--ADLHCV 63 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 PT + +GT+ ++C+ ++TT R + +DGR+ +V FT D RRDFTINA+ Sbjct: 64 PTGLRHGTVTVLCQGLPVEVTTFRREGTYSDGRHPDQVSFTTSLTEDLARRDFTINAMAW 123 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D+ G + D GG DL I+ +G+ R ED LRILR R A + I D A Sbjct: 124 DEDG-LADRFGGRADLEAGLIRCVGEPERRFQEDALRILRGLRLAAQL-DFAIHPDTAQA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--GGIFKEIFLDV------QEI 241 L +++ ERI E +LL ++ I ++ V Sbjct: 182 IRTETPRLAMVARERIGGEFLRLLCGPGACRVLLDFPQTVCEIVPQLAPTVGFDQKNPHH 241 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI----------------------L 279 D + +++ + + R L+ K + Sbjct: 242 VWDVYTHLVKTVEKVPPEPAP--RLAALLHDVGKPATFFMDEGGAGHFYGHAEASARLCE 299 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 ++A + L R +++ + + + + G + + + A + Sbjct: 300 NIAGQLRLDSATRNRVVTLVERHHLPLQPTQACVGRWLRRLGPGLFFQLIDLMKADGASC 359 Query: 340 LTHQDTCFILQVLSDIIHW--------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 L +Q L ++D+ H + G D + G+ G +G+ L + Sbjct: 360 LPNQSAREELDEVADLAHTILAQAPCLTLKDLAVNGRDAMAAGLS-GPAIGHALNRLLDQ 418 Query: 392 WINSSFQLSQEDLHHLL 408 + ++ L + L Sbjct: 419 VAEGTLPNERDILLNHL 435 >gi|224476578|ref|YP_002634184.1| tRNA CCA-pyrophosphorylase [Staphylococcus carnosus subsp. carnosus TM300] gi|254813699|sp|B9DNX1|CCA_STACT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|222421185|emb|CAL27999.1| putative poly(A) polymerase [Staphylococcus carnosus subsp. carnosus TM300] Length = 400 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 109/402 (27%), Positives = 182/402 (45%), Gaps = 22/402 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL + ++ VGGAVRD LM+ + DIDI T+ PD + IF+ T IP Sbjct: 9 AAPILQEIQDNGYEAYYVGGAVRDYLMDRPIHDIDITTSASPDEIEGIFTNT----IPIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R +V+F RD D RRDFTINA+ D Q Sbjct: 65 KEHGTINVVYNHENYEVTTFRAEGEYEDHRRPSEVIFVRDLYKDVERRDFTINAIAMDNQ 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + DY G +D++N+ IK +G+ + R ED LRILR RF + IDSD A + Sbjct: 125 FNIKDYFNGYSDIQNKLIKTVGNPYERFNEDALRILRGLRFKSQL-RFEIDSDTYKAMQE 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LS ERI E+ KLLE + + FK + + Sbjct: 184 KIADTEYLSIERIIIELRKLLEGTDASIVYPLLNELQFFKYV----------PFFKSFNT 233 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSI-LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + L I ++S++ +I LSM K + ++ I+ FN + KT Sbjct: 234 SAIEIKDPIKLELLIAIMSFKQSSNISLSMLKISNDSKKKIQKYITLFNKLPDIKTKKAL 293 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPLFPLTGD 368 ++ Y I +K LA + L H + I ++ ++I ++ + G Sbjct: 294 KVFVYDYGISTLSYILDMKDTLAANQIELGHPLIFNIESIDEINQNLIIRQRSDMMVNGK 353 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D+++ G + ++L + + IN + ++ + ++ Sbjct: 354 DILESLNQKGGPWLKDVLRNIECAIINQEIPNQKSEIINWVK 395 >gi|329890224|ref|ZP_08268567.1| tRNA-nucleotidyltransferase 1 [Brevundimonas diminuta ATCC 11568] gi|328845525|gb|EGF95089.1| tRNA-nucleotidyltransferase 1 [Brevundimonas diminuta ATCC 11568] Length = 364 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 114/363 (31%), Positives = 181/363 (49%), Gaps = 17/363 (4%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96 R++++ + D+DIAT + P+ V++ K +PT + +GT+ I ++ F+ITTLR Sbjct: 2 RNAVLGAPIDDVDIATVLTPEAVVKALKAAGLKSVPTGMEHGTVTAISERQPFEITTLRR 61 Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRNRTIKFIGD 155 D+ TDGR A V FT DW D+ RRDF +NALYAD G ++D G G D I F+G+ Sbjct: 62 DVSTDGRRATVAFTDDWAEDAARRDFRLNALYADADGLILDPTGAGYEDALAGRIVFVGE 121 Query: 156 AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA 215 RI EDYLRILRF+RFFA YG D + A +G++ LS+ER+ ++ KLL A Sbjct: 122 PEQRIREDYLRILRFYRFFAWYGRGAPDVAAVEACAALAEGVEQLSAERVSKDLLKLLAA 181 Query: 216 KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275 +P A+ M G+ + + ++L E + D +LR L+ + Sbjct: 182 PDPRAAVRLMDQAGVLGRVAPQPESLTL--------FEAMVGISADPVLRLSALLPD-EA 232 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 +++ + A K L R L+ + +S E + + G + + +L A Sbjct: 233 EAVRAAALKLRLSNAQRDRLVEAVAERID-PAMSEAETRAAIWRAGRQAVEDRLYRAWA- 290 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + D + +L+ W P P+ G D+ + G+ PG + G +L +Q WI Sbjct: 291 -----SGADAGVVQHLLALATAWTPPKLPVGGKDLARLGLSPGPETGRLLKAFEQSWIAD 345 Query: 396 SFQ 398 F Sbjct: 346 DFP 348 >gi|89897899|ref|YP_515009.1| poly (A) polymerase [Chlamydophila felis Fe/C-56] gi|89331271|dbj|BAE80864.1| poly (A) polymerase [Chlamydophila felis Fe/C-56] Length = 410 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 106/405 (26%), Positives = 179/405 (44%), Gaps = 17/405 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL L ++ VGG VRD LM +++IDIAT P V IF T + Sbjct: 9 AKKILQKLRNAGYQAYFVGGCVRDMLMGKPIEEIDIATNAPPVIVSTIFPDT----LALG 64 Query: 75 ISYGTIKIICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RS + DGR+ + V K D+LRRDFTIN +Y D + Sbjct: 65 AAFGIIVVKEDSRLFEVATFRSDENYEDGRHPERVVFSSMKEDALRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G D+ R ++ IG R ED LRILR RF + G +D A ++ Sbjct: 125 EKIFDLVEGRRDIEKRVVRAIGHPKLRFSEDKLRILRAIRFSSSLG-FTLDPATERAIVR 183 Query: 193 AKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L+ + P A+ + I IF +++++ L IE Sbjct: 184 EAPTLVNSVSPERIWQELRKMLK-QRPYEALYLLIKLKIITVIFPELRDVPPSLLLVNIE 242 Query: 252 AEQVFEWKIDSLLRFIV-LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + + F++ L +++ + + + + ++ + ++ Sbjct: 243 FAKKLNPLDFPEICFLLPLFQGVSEEAACVAFTRLRVSNKDLKLVQLWYQALPQFQNINN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ----DTCFILQVLSDIIHWKKPLFPL- 365 + +L + L +F A + T Q + L I K PL Sbjct: 303 NRVFWAHFLASPTASLF-LSLFSATQKDPSTQQHFIARVQELETRLEQFIERIKTSSPLV 361 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + D++ GI PG+ +G++L + I + L +E + LL++ Sbjct: 362 SAPDLISRGIAPGRLLGDLLREAETLSIENEC-LDKEKILSLLKE 405 >gi|332977064|gb|EGK13868.1| polyA polymerase family protein [Desmospora sp. 8437] Length = 411 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 93/400 (23%), Positives = 176/400 (44%), Gaps = 16/400 (4%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L + ++ VGG VRD L+ D D+ T P +V +F+KT + T I Sbjct: 9 LQVLERLEEAGFQAYWVGGCVRDELLGREPTDYDVTTDAPPGKVQSLFAKT----VATGI 64 Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ ++ +++ ++TT R + D R+ +V F + + D RRDFTINA+ D++G Sbjct: 65 RHGTVTVLIQRQAVEVTTFREETGYEDHRHPGQVQFVKRLEMDLARRDFTINAMARDRRG 124 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID GG DLR++ ++ +G+A R ED LR++R RF A G + +D A I+ Sbjct: 125 RLIDPFGGRKDLRSQVVRAVGEAEERFREDALRMVRALRFCAQLGFR-LDEQTEAALIRQ 183 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K L+ L+ ER+ E+ KL P I ++ G+F + D + + Sbjct: 184 KSLLRHLAVERVTQELEKLWATDKPSQGIRPLWEMGLFPHL-PPFTRWD-DHIGRPAIPV 241 Query: 254 QVFEWKIDSLLRFIVLIS--WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + + ++ R+ + + K + + F LP + S + Sbjct: 242 EEMDRQMGRWARWALFLHLCGVPPKESGTHLRSFRLPATDVDIIASVHRLGLDWHLTPGE 301 Query: 312 EI--KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT--CFILQVLSDIIHWKKPLFPLTG 367 + K+ +G + + + L+ +H ++ + + ++ + G Sbjct: 302 DSTGKQFLLSHGREKLTSALETAAVIHRWGPEEEEEMRRALFRWQQEMPVHHLRQLRVNG 361 Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 ++V+ G PG G +L ++ E L Sbjct: 362 RNLVEATGREPGPWTGRVLDILLKKVALGELPNETEALIE 401 >gi|291543612|emb|CBL16721.1| uncharacterized domain HDIG [Ruminococcus sp. 18P13] Length = 446 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 95/441 (21%), Positives = 172/441 (39%), Gaps = 54/441 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + LL + IVGG VRD L+ + D D+ T LP+++ ++F+ R I Sbjct: 6 PQVLTAMELLEQAGYACHIVGGCVRDMLLGRTPSDYDLTTNALPEQMQQVFASCR--TIE 63 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ I+ + TT R D +DGR+ V FT + D RRDFT+NA+ Sbjct: 64 TGIAHGTLTILLEGMSLECTTYRVDGTYSDGRHPDSVRFTPTLEEDLARRDFTVNAMAYH 123 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + + D GG +DL+ ++ +G+ R ED LRILR RF + G ++ + A Sbjct: 124 PRLGLTDPFGGRDDLKRGILRCVGEPERRFTEDALRILRCVRFASVLG-FAVEPETAAAV 182 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL---DQLS 247 K+ L+++S+ERI SE++KLL ++ + G +F+ + E++ Sbjct: 183 HSMKQRLELVSAERIRSELDKLLMGEHVT---EILCRYG--DVVFVPIPELAPCLGFAQH 237 Query: 248 QVIEAEQVFEW--------KIDSLLRFIVLISWQDKKS---------------------- 277 V+ D LLR +L+ K Sbjct: 238 SRYHCYDVWTHVAHTVGAAPRDPLLRLTMLLHDVGKPDCFTLDPDGTGHFKGHAPKGAVL 297 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA--- 334 + + + + + +K S ++ G + + + A Sbjct: 298 AAKILPRLRYDKHTCEQVTELIAWH-AEKLRSRASVRHALSRLGAEQFFRLIDVMCADNS 356 Query: 335 ------LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 L + + +L + + G D+V G G+++G +L Sbjct: 357 AKQPFCLEELPGLLEAADYARALLDAGVCLTLKQLAVNGRDLVAIG-AQGRQIGQVLQML 415 Query: 389 KQEWINSSFQLSQEDLHHLLR 409 + + L L + Sbjct: 416 LDAVVAERASNDRAQLLELAQ 436 >gi|15834702|ref|NP_296461.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] gi|270284868|ref|ZP_06194262.1| polyA polymerase [Chlamydia muridarum Nigg] gi|270288895|ref|ZP_06195197.1| polyA polymerase [Chlamydia muridarum Weiss] gi|7190112|gb|AAF38959.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] Length = 410 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 104/406 (25%), Positives = 178/406 (43%), Gaps = 21/406 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ VGG+VRD L++ ++++DIAT P V IF T + Sbjct: 9 AKKIVQKLRNAGYQAYFVGGSVRDMLLDRPIEEVDIATNASPTIVTTIFPDT----LSIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYADGRHPNRVIFASMKDDAIRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G DL + ++ IG R LED LRILR RF A G ++D +A IK Sbjct: 125 EKLFDLVEGRADLERKVVRAIGHPKQRFLEDKLRILRAIRFAATLG-FSLDPKTEIAIIK 183 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L K P ++ + + IF +++ L I Sbjct: 184 EAPSLPTSVSPERIWQELKKMLR-KAPYESLQLLIKLKVLPIIFPELKASPSGFLRSTIA 242 Query: 252 -AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ + I + + L ++ ++ + + + L ++ + Sbjct: 243 FAQRIRDPHIPEIAFLLPLFQEVKQEEAIAAFSRLKVSNKELGLLEDWYEALPQFRAKQN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-------LQVLSDIIHWKKPLF 363 +I + + L + L L H+ FI ++ S I + Sbjct: 303 NKIFWAHFFASQ---TSPLLLSLFLSLQRTPHEQELFISRVHHLKTRLASFIERIQTGSP 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ D++ GI PG+ +G +L + I +E + LL+ Sbjct: 360 LVSAPDLMARGIAPGRLLGELLKEAEALSIEHECS-DKEKILSLLK 404 >gi|282890317|ref|ZP_06298845.1| hypothetical protein pah_c016o016 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499699|gb|EFB41990.1| hypothetical protein pah_c016o016 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 412 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 91/405 (22%), Positives = 178/405 (43%), Gaps = 14/405 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 I+ L K + GG VRD LM DIDIAT P++++ +F T Sbjct: 7 HATEIVKKLVKAGYIAYFAGGWVRDYLMGHPSSDIDIATNAPPEKILDLFPHTLL----V 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ- 131 +++G + ++ ++I+T R D DGR + + D+ RRDFTIN ++ D Sbjct: 63 GLAFGVVIVLIEGHQYEISTFRQDFDYLDGRKPSKIQLSTPQEDAKRRDFTINGMFYDPI 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + + D+V G DL I+ IG+ R LED LR++R RF + +G ID+D A I Sbjct: 123 EDTIFDFVRGAVDLDLGIIRTIGNPQERFLEDRLRMVRAIRFASRFG-FIIDTDTQEAII 181 Query: 192 KAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L ++ ERIW E K+ + +A++ ++ + EIF + L+ + + Sbjct: 182 ENASTLFPSVAMERIWQEFCKMSNYPSFDHALIELHRLQLLAEIFPTLANTHLNAIKHRV 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF---NCNFNQKT 307 ++ ++ + ++L L ++L + K+ + +++ + N + Sbjct: 242 KSFHLYPHETPTILYLAQLFPDLSLTTLLDIFKELKTSKRDCHYVEVYRKGQNLMNSANA 301 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLAL---HYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +Y + + + I A +L + ++ I + Sbjct: 302 GDNWVEWTHYYALPEAQICLDIMIANAATEEERTDLANFHKNLRKKLAKHIERIQHKNPL 361 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ ++ GI P K++G +L ++ I ++ + +Q+ L L + Sbjct: 362 ISSAFLMDQGILPSKQMGLLLKEAEKIVILNNLENAQDALSSLKQ 406 >gi|297563764|ref|YP_003682738.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848212|gb|ADH70232.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 499 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 91/449 (20%), Positives = 172/449 (38%), Gaps = 56/449 (12%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + +VGG VRD+L+ D+D+ T +P R++ + V I +GT Sbjct: 51 ERFAAHGQQLALVGGPVRDALLGRPANDVDLTTDAVPQRILELVDGWADSVWTVGIDFGT 110 Query: 80 IKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVID 137 + + + ++TT RS+ + R +V + D D LRRDFT+NA+ G + +D Sbjct: 111 VGLRKKGLQLEVTTYRSESYSPKSRKPEVAYGTDIHDDLLRRDFTVNAMAVRLPGLEFVD 170 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL DLR + ++ G +D LRI+R RF A G + + A+ L Sbjct: 171 PFGGLADLRAKVLRTPGRPEDSFSDDPLRIMRAVRFAAQLG-FTLAPEVAEAARDMADRL 229 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD------------- 244 I+S+ER+ E+ KL+ + +P I M + GI + + ++ ++ L+ Sbjct: 230 SIVSAERVRDELTKLMLSPDPHRGIELMVDLGIARYVLPEIPKLRLEIDEHHRHKDVYEH 289 Query: 245 ---QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-------------------- 281 L Q IE E+ + D +LR L+ K + Sbjct: 290 SLTVLDQAIELEEKRGHEPDLVLRLAALLHDVGKPKTRAFESGGRVTFHHHEVVGASMSR 349 Query: 282 --AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI-KKLFYLYGDKVMIAKLKIFLALHYN 338 P+++ + + + E Y + ++ + + Sbjct: 350 KRLTALRFPKDVVSDVSTLVELHLRFHGYGRGEWTDSAVRRYARDAGLQLERLHILTRAD 409 Query: 339 ------------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 ++ D +++L++ + L G+++ + G+ PG VG Sbjct: 410 CTTRNRRKAAALARSYDDIERRIELLAEQEELDRIRPDLDGNEIQEILGVKPGPVVGRAY 469 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + + + + +E LR A Sbjct: 470 RFLLELRLENG-PMGREAATEELRAWAAE 497 >gi|194016787|ref|ZP_03055400.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus pumilus ATCC 7061] gi|194011393|gb|EDW20962.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacillus pumilus ATCC 7061] Length = 400 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 27/403 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 I IL L++ ++ VGGAVRD L+ + DIDIAT PD V +F KT + Sbjct: 7 HAIPILHTLHEHGHQAYFVGGAVRDVLLGREIGDIDIATDATPDTVESLFEKT----VDV 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 +GT+ ++ +++TT R++ D R +V F K D LRRD TINA+ D Sbjct: 63 GKEHGTVIVLHDGVSYEVTTFRTESEYEDFRRPKEVAFITSLKEDLLRRDLTINAMAMDI 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ID+V G D+ + I+ +GD R ED LR++R RF + G + + A Sbjct: 123 DGEIIDHVEGKKDIERKRIQTVGDPACRFQEDALRMMRAVRFLSQLG-FELAPETAEAME 181 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K K+ L +S ER E+ KLL+ + AI + + +++E+ +++ L + Q Sbjct: 182 KDKRLLANISVERKKIEMEKLLKGRYCERAIKVLISTKLYEEL-PGLKKDRLQESFQSFP 240 Query: 252 --AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS---FFNCNFNQK 306 E +++ + L D+ + K++ L ++ ++ + +C+++ + Sbjct: 241 YYLLDGLEEVWGAVIHLLGL----DEAEAVLFLKEWKLSTKLLKDAVAISQYVDCDWDAE 296 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + G+ V+++ LKI H + + + + ++ Sbjct: 297 KM---------FEAGEHVLLSSLKISQLKHERRIFFDELEAAKRSYDALPIKTLQDLAVS 347 Query: 367 GDDVVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G D++ + GK + L K+ +++ + +E + L Sbjct: 348 GKDLMAFRQKTSGKWIAEELDLVKKAVLHNHLENRKEAIEEWL 390 >gi|301336247|ref|ZP_07224449.1| polyA polymerase [Chlamydia muridarum MopnTet14] Length = 410 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 104/406 (25%), Positives = 178/406 (43%), Gaps = 21/406 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ VGG+VRD L++ ++++DIAT P V IF T + Sbjct: 9 AKKIVQKLRNAGYQAYFVGGSVRDMLLDRPIEEVDIATNASPTIVTTIFPDT----LSIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYADGRHPNRVIFASMKDDAIRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G DL + ++ IG R LED LRILR RF A G ++D +A IK Sbjct: 125 EKLFDLVEGRADLERKVVRAIGHPKQRFLEDKLRILRAIRFAATLG-FSLDPKTEIAIIK 183 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L K P ++ + + IF +++ L I Sbjct: 184 EAPSLPTSVSPERIWQELKKMLR-KAPYESLQLLIKLKVLPIIFPELKASPSGFLRSTIA 242 Query: 252 -AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ + I + + L ++ ++ + + + L ++ + Sbjct: 243 FAQRIRDPHIPEIAFLLPLFQEVKQEEAIAAFSRLKVSNKELGLLEDWYEALPQFRAKQN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-------LQVLSDIIHWKKPLF 363 +I + + L + L L H+ FI ++ S I + Sbjct: 303 NKIFWAHFFASQ---TSPLLLSLFLSLQRTPHEQELFISRVHHLKTRLASFIERIQTGSP 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ D++ GI PG+ +G +L + I +E + LL+ Sbjct: 360 LVSAPDLMARGIAPGRLLGELLKEAEALSIEHECS-DKEKILSLLK 404 >gi|160933669|ref|ZP_02081057.1| hypothetical protein CLOLEP_02530 [Clostridium leptum DSM 753] gi|156867546|gb|EDO60918.1| hypothetical protein CLOLEP_02530 [Clostridium leptum DSM 753] Length = 422 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 163/401 (40%), Gaps = 26/401 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I ++ L + ++ VGG VRD L+ +D D A + LPD + V T + Sbjct: 38 IKLIRRLEEKGFEAYAVGGCVRDMLLGKKPEDYDFAVSALPDETKQAL--NGVPVFDTGL 95 Query: 76 SYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 +GT+ + +ITT R++ +D R KV FTR D RRDFT+NA+ + Sbjct: 96 RHGTVTAVVDGHAAEITTYRTESGYSDFRRPDKVGFTRSLSEDLSRRDFTVNAMAFHPER 155 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D GG DL+NR +K +G+ R ED LRILR RF + E I+ D A +K Sbjct: 156 GLVDCFGGKEDLKNRILKCVGEPERRFREDALRILRCLRFSSAL-EFAIEEDTRQALLKH 214 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 ++ LK ++ ER+ +E +KL+ + + +F+ + + Sbjct: 215 RELLKKIAPERLQAEFSKLILGEWAEQVLT--EYLPVFQVFLPEAG-----------QRR 261 Query: 254 QVFEW-KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 W + LR + S ++ + + + + Sbjct: 262 SALSWLPAEKKLRLAGVFSGCTPDETARALERLRYDGKTIRTVTTLERYRQVPLETDRRQ 321 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 +KL +L G + L+ + ++ + + + G+D+++ Sbjct: 322 ARKLVFLLGMETAEELLRFRE-------EPELLKWLEVIRGQGLCCSLSQLSVNGEDLIR 374 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G P GK +G L Q ++ + + +E L + + Sbjct: 375 LGYPEGKGIGKALNRLLQLVLDETLENQKELLLKKAKSWMK 415 >gi|330684979|gb|EGG96654.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus epidermidis VCU121] Length = 400 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 93/406 (22%), Positives = 166/406 (40%), Gaps = 26/406 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL+ + + ++ VGG+VRD LM + DIDI T+ P + IF T IP Sbjct: 7 ERAKPILNQIQQHGYQAYYVGGSVRDYLMQRPIHDIDITTSATPYEIESIFDHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVV-FTRDWKADSLRRDFTINALYAD 130 +GTI ++ ++ +++TT R++ D R V F RD D RRDFTINA+ D Sbjct: 63 VGKEHGTINVVYNRENYEVTTFRAEEEYIDHRRPSDVHFVRDLYEDVQRRDFTINAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + DY G +D+ N I+ +G R ED LRILR RF + K I+ A Sbjct: 123 TDYQTFDYFSGEDDINNGIIRTVGQPTERFEEDALRILRGLRFQSQLNFK-IEYHTYNAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + +K LS ERI E+ KL+ +N + H+ F I Q Sbjct: 182 ANQMEDIKYLSIERIIVELKKLISGQNVAKSYHHLIELKAFNFI----------PYFQNF 231 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E Q+ + +I LI+ + + + + + + T++ Sbjct: 232 EMHQLNIDEPIHFDTWIALINSKFDEQ--QPLSPLKISNKEKSHIKQLTTIINQLPTINT 289 Query: 311 -PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-----ILQVLSDIIHWKKPLFP 364 ++ + Y + ++ +++ L N + I++ + ++ Sbjct: 290 KKDLIMMVYDFDINDILTVIELSTLLSKNQFETPNPLIINPQTIMESYHQLPINERQQLA 349 Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G D+++ G V ++L + + S +++ + Sbjct: 350 VNGSDLMQYLNQRGGPWVKDVLRQIECAVVTKQVINSHDEIMKWVD 395 >gi|330836490|ref|YP_004411131.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta coccoides DSM 17374] gi|329748393|gb|AEC01749.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirochaeta coccoides DSM 17374] Length = 475 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 101/436 (23%), Positives = 173/436 (39%), Gaps = 53/436 (12%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 S + IVGGAVRD L+ + +D D AT +P+ VM F +KVIPT I +GT Sbjct: 31 SFFARKGLSLYIVGGAVRDWLLGIRNEDFDFATDAMPEEVMDTF----HKVIPTGIKHGT 86 Query: 80 IKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVI 136 + ++ RK+ +++TT R D +DGR+ V F R+ + D RRDFTINAL + G + Sbjct: 87 VTVLFRKQQYEVTTFRVDGDYSDGRHPDSVAFVRNLEQDLARRDFTINALAVNAYTGVLT 146 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D G+ DL+ + I+ IGD R+ ED LRI+R RF G I+ A K G Sbjct: 147 DLHDGIGDLKRKVIRAIGDPEARLSEDALRIVRACRFAGKLG-FAIEDKTFTAMKKLSPG 205 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVIEAEQV 255 L+ +S ERI E++++L P + + K ++ + ++Q V Sbjct: 206 LEAVSGERIHEELSRMLLGARPSACLRLLQECDALKIFMPELDACVGIEQ--GGYHIHDV 263 Query: 256 FEWKI---DSL--------LRFIVLISWQDKKSILS----------------------MA 282 F + D+ +R+ L K + Sbjct: 264 FTHSLLACDAAAKNGASLNVRYAALFHDIGKPETRGGTIAGGHTFYKHEFVSERLTAMVC 323 Query: 283 KKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 ++ R ++ + + + +++ G + + +A Sbjct: 324 ERLKFSRADTERILLLVRSHMLHYTEDWTDAAVRRFIRRIGVDALDELFALHMADQEAIA 383 Query: 341 THQDTCFILQVLSDI-------IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 + ++ I + G ++ GIP G+ +G I + Sbjct: 384 GKSSMLTLGRLPDRIREQLHAGTALSVKDLTVDGKVLMAAGIPAGRHMGTIFQDLLELVT 443 Query: 394 NSSFQLSQEDLHHLLR 409 +S + + E L + Sbjct: 444 DSPEKNTPEILIAEAQ 459 >gi|296333017|ref|ZP_06875474.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674879|ref|YP_003866551.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149868|gb|EFG90760.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413123|gb|ADM38242.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 397 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 167/400 (41%), Gaps = 20/400 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 8 ALPVLRTLIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R V F + D RRD TINA+ Sbjct: 64 KEHGTIIVLWEDETYEVTTFRAESEYEDYRRPSDVQFITSLEEDLKRRDLTINAMAMTAD 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GKV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K Sbjct: 124 GKVLDYFGGKKDIDQKLIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSLETKEAITK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L +S ER E K+L+ + A+ + G+++ ++ + + + + Sbjct: 183 EKSLLSHVSVERKTIEFEKMLQGRASRQALQTLIQTGLYE----ELPGFYHKRENLLAAS 238 Query: 253 EQVFEWKIDSLLRFIVLISWQ--DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E F + L+ D K K + LP ++ I + Sbjct: 239 EFPFYSLTSREELWAALLIDLEIDLKDAPLFLKAWKLPGKVMKEAIHISHTFGQSLDTMS 298 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G+K +++ KI L + I ++ +TG D+ Sbjct: 299 ------MYKAGEKSLLSAAKISQLRQNEKLDDEKLKDIQNTYQNLPIKSLRDLDITGKDL 352 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + P GK V L +Q + ++ + L+ Sbjct: 353 LALRNRPAGKWVSEELQRIEQAVVTGKLSNQKKHIEEWLK 392 >gi|302333068|gb|ADL23261.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus JKD6159] Length = 400 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGNNVEESFNHLKSLKAFNYM-PYFEHLDINQINVT- 239 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 240 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNALPSVIT 289 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 349 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 350 VNGGVLMAYLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|255261768|ref|ZP_05341110.1| poly A polymerase family protein [Thalassiobium sp. R2A62] gi|255104103|gb|EET46777.1| poly A polymerase family protein [Thalassiobium sp. R2A62] Length = 383 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 108/406 (26%), Positives = 182/406 (44%), Gaps = 26/406 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ + +W + + + + VGG VR+++++L + D+D+++ P++ + Sbjct: 1 MTQIDGQWMKSPAVQRVFEIYADAGFELFFVGGCVRNAVLDLPIHDVDLSSNATPEQGTK 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 I S KVI T +GTI ++ +IT+ R D+ T GR A V +++ D+ RRD Sbjct: 61 IASAAGLKVISTGYDHGTITVVSDGTPLEITSFRRDVETYGRRAVVAYSQSIDDDARRRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYA G+V+D +GGL DL R ++FI +A RI ED+LR LRFFRF A Y ++ Sbjct: 121 FTMNALYARATGEVVDPLGGLLDLYARRLRFIENADQRIQEDFLRSLRFFRFHALYADQT 180 Query: 182 --IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + + + A GL+ L ERI +E+ KLL A +P AI M G+ + Sbjct: 181 LGFEPEAIAAISGNLDGLETLPKERIGAEMVKLLAATDPAPAIATMGQCGVLMRVLPGAA 240 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 +L L V E+ + +++ R V+ + L + L Sbjct: 241 AAALAVLVHV---EEAYSVAPNAIRRLCVVGGEDPVRD-------LRLSKAQAKEL---- 286 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + S+ +L Y G I L + A L ++ + I Sbjct: 287 -NVLKEGLGSLMSAAELGYRLGSTAAIDVLLLRAATAGMMLDPRE-------IDAAIRGD 338 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 + P+ D+ G +G L + WI S ++ +L Sbjct: 339 AQVCPIAASDLSDSF--QGWALGEELKRLEAVWIASDLSATKSELL 382 >gi|290894259|ref|ZP_06557227.1| polyA polymerase [Listeria monocytogenes FSL J2-071] gi|290556198|gb|EFD89744.1| polyA polymerase [Listeria monocytogenes FSL J2-071] Length = 393 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 173/399 (43%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF + T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQTS----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +Y+++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEYYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FVLHDPFSGQEAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--ISLDQLSQVI 250 + L+ S ERI E K+++ K AI + + +++ +L + + Sbjct: 183 QIELLQHTSVERITVEWIKMMKGKAAKRAIELLLKVK-METYLPGLKDEKPALSEFASWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ E I ++ L+ ++ + K + LP + + + K + Sbjct: 242 WEKRTTEESI-----WLGLVVAVKPNNVNAFLKAWKLPNKTIQLVNKAYQDALKMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 TDE---LYHAGKAVFSLVNELNVIRGQENNQHK----LSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 350 LKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388 >gi|257795487|ref|ZP_05644466.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9781] gi|258413296|ref|ZP_05681572.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9763] gi|258420597|ref|ZP_05683539.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9719] gi|258426793|ref|ZP_05688013.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A9299] gi|258444791|ref|ZP_05693120.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A8115] gi|258447375|ref|ZP_05695519.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A6300] gi|258449740|ref|ZP_05697841.1| polynucleotide adenylyltransferase [Staphylococcus aureus A6224] gi|258454591|ref|ZP_05702555.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A5937] gi|282892953|ref|ZP_06301188.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A8117] gi|282927984|ref|ZP_06335593.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus A10102] gi|147741012|gb|ABQ49310.1| Polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus JH9] gi|149946458|gb|ABR52394.1| Polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus JH1] gi|257789459|gb|EEV27799.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9781] gi|257839860|gb|EEV64328.1| polynucleotide adenylyltransferase [Staphylococcus aureus A9763] gi|257843545|gb|EEV67952.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9719] gi|257849954|gb|EEV73912.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A9299] gi|257850284|gb|EEV74237.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A8115] gi|257853566|gb|EEV76525.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A6300] gi|257856988|gb|EEV79888.1| polynucleotide adenylyltransferase [Staphylococcus aureus A6224] gi|257862974|gb|EEV85738.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A5937] gi|282590281|gb|EFB95361.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus A10102] gi|282764950|gb|EFC05075.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A8117] Length = 411 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I + A Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIAMETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + +++ ++Q++ Sbjct: 193 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEQLDMNQINVT- 250 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 251 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 300 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 301 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 360 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 361 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|313608008|gb|EFR84108.1| CCA-adding enzyme [Listeria monocytogenes FSL F2-208] Length = 390 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 94/399 (23%), Positives = 174/399 (43%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF + T Sbjct: 5 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQTS----YDTG 60 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GTI + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 61 IAHGTITVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 120 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 121 FTLHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALES 179 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--ISLDQLSQVI 250 + L+ S ERI E K+++ K P AI + + +++ +L + + Sbjct: 180 QIELLQHTSVERITVEWIKMMKGKAPKRAIELLLKVK-METYLPGLKDEKPALSEFASWD 238 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ E I ++ L+ ++ + K + LP + + + K Sbjct: 239 WEKRTTEESI-----WLGLVVAVKPNNVNAFLKAWKLPNKTIQLVNKAYQDALKMKETW- 292 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 +K Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 293 --LKDELYHAGKAVFSLVNELNVIRGQENNQHK----LSQAYEALPIHSKKDLAITGADL 346 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 347 LKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 385 >gi|258422511|ref|ZP_05685419.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9635] gi|257847268|gb|EEV71274.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9635] Length = 411 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 93/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 193 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEHLDMNQINVT- 250 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + + Sbjct: 251 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNALPIIIT 300 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + ++++K + Sbjct: 301 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIYETLHHLPMYYRKDMM 360 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 361 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|327539083|gb|EGF25715.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rhodopirellula baltica WH47] Length = 420 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 173/407 (42%), Gaps = 20/407 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++ + I++ LN + + GG VRD+L+ +D D+AT P+ V +F K Sbjct: 14 AAEAVRIITELNDAGFVAVLAGGCVRDALLGRKPKDFDVATDATPESVREVFGKRNTLAF 73 Query: 72 PTSISYGTIKIICRKKYF-----------DITTLRSD-LITDGRYAKVVFTRDWKADSLR 119 S+G I ++ + ++ T R+D +DGR V D +AD++R Sbjct: 74 --GESFGVIGVLPPRSAVTEEPSAKLMPTEVATFRADGNYSDGRRPDSVTYGDAEADAMR 131 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN ++ D KVIDYVGG+ DL ++ IG A R ED LR+LR RF G Sbjct: 132 RDFTINGMFYDLFDSKVIDYVGGIQDLEKGHLRTIGKAVQRFEEDKLRMLRAVRFATTLG 191 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I+ A + ++S ERI +E+ +++ + + + + G+ ++ + Sbjct: 192 -FSIEYKTFAAIQNHASDISVVSGERIGAEMRRVMTSSASDFGLETLVDTGLALHVWPQL 250 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + ++ + S+ I+ + +++ L L + + + + L R + + Sbjct: 251 RSMNWTEYSRAIQTTKHRSFEVAMALALFHL-PGDSIQCLRLLFNDWKLSVAERRAIEAA 309 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 +L + D+ A+ + A + + D Sbjct: 310 LTHAQTITQCDGLPWSRLQPILIDE--DAETIVATARALAPKSRGVARAARSLSGDPNEL 367 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 P +TG D++ G+ PG + +IL + + ++ ++ L Sbjct: 368 NPPPL-VTGADLIANGMRPGPEFKSILQSIRDDQLDGKLTSREDALQ 413 >gi|291295024|ref|YP_003506422.1| Polynucleotide adenylyltransferase region [Meiothermus ruber DSM 1279] gi|290469983|gb|ADD27402.1| Polynucleotide adenylyltransferase region [Meiothermus ruber DSM 1279] Length = 427 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 103/415 (24%), Positives = 175/415 (42%), Gaps = 41/415 (9%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ + +D+D AT+ P+ VMR+ + IPT + +GT+ I+ + Sbjct: 18 YLVGGAVRDILLGETPEDLDFATSAPPEVVMRLAKAQGLEAIPTGLEHGTVTILIDHHPY 77 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRT 149 ++TT R D+ T GR A+V + + + D RRDFTI A+ D G+VID GG DL Sbjct: 78 EVTTFRRDVETYGRKARVAWGQSIEEDLARRDFTIGAIAMDAAGRVIDPYGGQQDLEAGV 137 Query: 150 IKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG-LKILSSERIWSE 208 ++ +GD R EDYLR++R RF A YG I+ L A+ A L ++ ER+ +E Sbjct: 138 LRAVGDPAQRFREDYLRVIRAGRFAARYG-FEIEPRTLQAARAAAPEVLSHVAIERVTAE 196 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL--------DQLSQVIEAEQVFEWKI 260 +K + P + ++Y+ I + + + ++ L + + QV + Sbjct: 197 FDKAFQNGTPSRFLRYLYDLEILQRLIPEFEDTHLLLQNPRWHPEGDVLTHVLQVVDRAP 256 Query: 261 DSLLRFIVLISWQDKKS----------------------ILSMAKKFSLPREIRYFLISF 298 R+ L+ KK I +A+ LP +R L+ Sbjct: 257 PP-YRWHALLHDIGKKDTARWRPEGWYSFYGHERVGAGLIPRIARDLRLPNHLRDELVVT 315 Query: 299 FNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + T P + F + A ++ A + + F Sbjct: 316 TALHMVPVFTKPTPAAIRKFQAQAGPHLPALRALYEADGAGRRSKESWKFFEP------Q 369 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 L G +++ G PGK +L ++S + E L+ + + + Sbjct: 370 PVPVQPVLLGRHLIERGHKPGKVFSRMLKAAYDWQLDSG-ETDIEALYRVALRAL 423 >gi|257425523|ref|ZP_05601948.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 55/2053] gi|257428182|ref|ZP_05604580.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 65-1322] gi|257430812|ref|ZP_05607194.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 68-397] gi|257433570|ref|ZP_05609928.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus E1410] gi|257436412|ref|ZP_05612459.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus M876] gi|282904040|ref|ZP_06311928.1| polyA polymerase [Staphylococcus aureus subsp. aureus C160] gi|282905805|ref|ZP_06313660.1| tRNA nucleotidyltransferase CCA-adding enzyme [Staphylococcus aureus subsp. aureus Btn1260] gi|282908775|ref|ZP_06316593.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911036|ref|ZP_06318838.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914248|ref|ZP_06322035.1| polyA polymerase [Staphylococcus aureus subsp. aureus M899] gi|282919171|ref|ZP_06326906.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282924355|ref|ZP_06332029.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus subsp. aureus C101] gi|283958222|ref|ZP_06375673.1| polyA polymerase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501274|ref|ZP_06667125.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus 58-424] gi|293510235|ref|ZP_06668943.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus subsp. aureus M809] gi|293526830|ref|ZP_06671514.1| polyA polymerase [Staphylococcus aureus subsp. aureus M1015] gi|297591063|ref|ZP_06949701.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|257271980|gb|EEV04118.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 55/2053] gi|257275023|gb|EEV06510.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 65-1322] gi|257278940|gb|EEV09559.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus 68-397] gi|257281663|gb|EEV11800.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus E1410] gi|257284694|gb|EEV14814.1| polynucleotide adenylyltransferase region [Staphylococcus aureus subsp. aureus M876] gi|282313742|gb|EFB44135.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus subsp. aureus C101] gi|282316981|gb|EFB47355.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282322316|gb|EFB52640.1| polyA polymerase [Staphylococcus aureus subsp. aureus M899] gi|282324731|gb|EFB55041.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327039|gb|EFB57334.1| polynucleotide adenylyltransferase protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331097|gb|EFB60611.1| tRNA nucleotidyltransferase CCA-adding enzyme [Staphylococcus aureus subsp. aureus Btn1260] gi|282595658|gb|EFC00622.1| polyA polymerase [Staphylococcus aureus subsp. aureus C160] gi|283790371|gb|EFC29188.1| polyA polymerase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920388|gb|EFD97452.1| polyA polymerase [Staphylococcus aureus subsp. aureus M1015] gi|291096279|gb|EFE26540.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus 58-424] gi|291467179|gb|EFF09697.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Staphylococcus aureus subsp. aureus M809] gi|297575949|gb|EFH94665.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438138|gb|ADQ77209.1| polyA polymerase family protein [Staphylococcus aureus subsp. aureus TCH60] Length = 411 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 134 TANKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 193 RTQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVT- 250 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 251 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 300 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 301 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 360 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 361 VNGGVLMAHLNAKSGPWLKDLLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|226312087|ref|YP_002771981.1| tRNA CCA-adding enzyme [Brevibacillus brevis NBRC 100599] gi|226095035|dbj|BAH43477.1| probable tRNA CCA-adding enzyme [Brevibacillus brevis NBRC 100599] Length = 407 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 88/409 (21%), Positives = 167/409 (40%), Gaps = 15/409 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L L + ++ VGG VRD L+ V DIDI T P V+ +F +PT Sbjct: 6 AKRVLDRLEEHGFEAYYVGGCVRDWLLQRPVHDIDICTNAHPGDVILLFPDH----VPTG 61 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ + + F++TT R++ + R A+V F + + D RRDFT+NA+ D+ Sbjct: 62 LKHGTVSVKVEGQLFEVTTFRTEGKYEDYRRPAEVQFVSELRLDLERRDFTMNAMAMDRH 121 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GG D+ +R ++ +G R ED LR+LR RF + G I+ ++A + Sbjct: 122 QVLHDPFGGQEDIEHRLVRAVGIPLERFQEDALRLLRGVRFASQLG-FVIEDQTMLAMKQ 180 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L ++ ERI E+NK L++K P + + +V+++ + LS Sbjct: 181 MAPLLAHIAVERIREELNKTLDSKAPEVGCQLLNETRLMAY-APEVEKLFI--LSNEHAW 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIP 311 + ++ + + + + + + Q +P Sbjct: 238 RLRHLQTVTQKWSLLLFAANYSPVQAREVCRFLKMSKRETEAICCLVELLTRLQPKWDVP 297 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH---WKKPLFPLTGD 368 + + L + + FL L + + + +L + +TG Sbjct: 298 QEIEWGPLLLEVGWDTCNEFFLLLQACWWEERQSFSMQALLDQYENMPVKTIKDLAITGL 357 Query: 369 DV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 D+ V PG+ + +L ++ + E L + +K +A + Sbjct: 358 DLQVAVQKKPGEWIVRVLESLLRQTALHGLPNTPEALVEVAKKEVAQDE 406 >gi|298694748|gb|ADI97970.1| probable PolyA polymerase family protein [Staphylococcus aureus subsp. aureus ED133] Length = 400 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFDDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 CTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEHLDMNQINVT- 239 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 240 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQAKDINQYIQIMNALSSIIT 289 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLQHLPMHNRKDMM 349 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|225873814|ref|YP_002755273.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Acidobacterium capsulatum ATCC 51196] gi|225792662|gb|ACO32752.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Acidobacterium capsulatum ATCC 51196] Length = 462 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 94/455 (20%), Positives = 176/455 (38%), Gaps = 69/455 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I++ L ++ GG VRD L+ +D D+ T PD V+ +F +T Sbjct: 20 AAHIVAHLRAHGYEAYFAGGCVRDMLLGHPPKDYDVTTRARPDVVLALFPRTYA----VG 75 Query: 75 ISYGTIKII--CRKKYF--DITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALY 128 +G + + + ++ T RSD DGR +V F + D LRRDFTIN + Sbjct: 76 AHFGVVLVADEIDGQPITTEVATFRSDGAYLDGRRPSEVAFADRPEDDVLRRDFTINGML 135 Query: 129 ADQ---------QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 D V+D+V G DL ++ IG A R ED LR+LR RF A +G Sbjct: 136 LDPEKWQQTGSLDDAVLDFVDGRADLSAGIVRAIGHAERRFTEDKLRMLRAVRFAARFG- 194 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++ + A + G+ +S ER+ E+ ++L + +A + G+ +E+ ++ Sbjct: 195 YELEPETFAALRQLAPGIAQVSRERVRDELTRMLTEGHARHAFELLDASGLLREVLPEI- 253 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK------------------------ 275 D+L V + Q + + D + ++L+ Sbjct: 254 ----DRLHGVEQPPQ-YHPEGDVWVHTLLLLEKLAPGCPATLAWGALLHDVGKPATFERA 308 Query: 276 --------------KSILSMAKKFSLPREIRYFLISFFNCNFN---QKTLSIPEIKKLFY 318 K + ++ + +++ + + + +K+ F Sbjct: 309 PDRIRFSGHVEVGVKIAAEICRRLRFSNDETEQILALVENHMRFGDIQRMKPSTLKRFFR 368 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 L G + +I + +LT + Q + +P +TG D+++ G PG Sbjct: 369 LPGFDEHLELHRIDCLSSHGDLTLYEFAQ-QQYHALPPEAVRPPLLVTGRDLIEAGYQPG 427 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + L + + S+E+ L+R+ A Sbjct: 428 PQFRQWLALAEDAQLEGRIH-SREEGLALIREAAA 461 >gi|269302631|gb|ACZ32731.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Chlamydophila pneumoniae LPCoLN] Length = 410 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 111/408 (27%), Positives = 184/408 (45%), Gaps = 19/408 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L L ++ VGG VRD LMN ++DIDIAT P V IF VI Sbjct: 7 EAAKKVLIKLRNAGYQAYFVGGCVRDMLMNRPLEDIDIATNASPTIVSTIFPD----VIS 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +++G I + + F++ T RSD DGR+ + + D+LRRDFT+N +Y D Sbjct: 63 IGVAFGIIVVKQDGRLFEVATFRSDGEYKDGRHPDRIIFSSMREDALRRDFTVNGMYYDP 122 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + KV D+V G D+ + I+ IG R ED LRILR RF + G +D A Sbjct: 123 FEDKVFDFVEGTRDIEKKVIRAIGHPRLRFSEDKLRILRAIRFSSSLG-FTLDPTTERAI 181 Query: 191 IKAKKGL-KILSSERIWSEINKLLE-AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 IK L +S ERIW E+ K+L+ + +++ IF IF ++++I L Sbjct: 182 IKEAPALVNSVSPERIWQELKKMLKRQPHGALSLLLKLKVLIF--IFPELRDIPYSLLRT 239 Query: 249 VIEAEQVFEWKIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 IE + F +L + L +++ + + + + S++ + + Sbjct: 240 TIEFARKFNPTHFPEILFLLPLFQGVSEEAATVAFGRLRISNKELKLIESWYEALPHFQN 299 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS-----DIIHWKKPL 362 S + +L + L++F AL + Q +Q L I+ K Sbjct: 300 QSSNRVFWAHFLASPTAPLF-LELFSALQKDPSRQQHFISRVQELESRLEQFILRIKTSS 358 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ D++ GI PG+ +G++L + I + L +E + LL++ Sbjct: 359 PVVSAPDLIAKGITPGRLLGDLLREAEILSIENEC-LDKEKILLLLQE 405 >gi|256847161|ref|ZP_05552607.1| tRNA adenylyltransferase [Lactobacillus coleohominis 101-4-CHN] gi|256715825|gb|EEU30800.1| tRNA adenylyltransferase [Lactobacillus coleohominis 101-4-CHN] Length = 403 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 170/405 (41%), Gaps = 20/405 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L + + ++ VGG+VRD+++ ++ DIDIAT+ P + IF KT + Sbjct: 11 EPARPVLQKIEQAGFEAYFVGGSVRDTILGDAIHDIDIATSAYPSEIKAIFKKT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ I+ ++ TT R++ D R +V F R K D RRDFTINAL Sbjct: 67 TGIQHGTVMILDHGTGYETTTFRTESGYQDYRRPDQVTFVRSLKDDLKRRDFTINALAMK 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G +ID GL DL+ I+ +GD R ED LR++R RF A + ID Sbjct: 127 EDGTIIDLFDGLGDLQRHLIRAVGDPEERFHEDALRMMRAVRFAAKL-DFAIDPATQRGI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L ++ ERI E +KLL NP + + + ++ + L ++ Sbjct: 186 EDHGELLTKIAVERIEVEFSKLLLGINPKRGLDYFLTTDL--YLYCPRLQHHYQALVKLS 243 Query: 251 EAEQVFEWKIDSLLRFIVLISWQ--DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + + ++ +L S Q + +I S K + L + + + Sbjct: 244 QHQDWSSITNEAEAWLALLYSLQITGQSAISSFMKDWKLSNALISLVQHAMTVLLAIQKD 303 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 I + + + G K + L + L H D +L + + + + G Sbjct: 304 QIKPM--MLFNAGRKAI---LTASQVAEFEELQHPD---LLAMNDQLPIHDRHDLAIDGG 355 Query: 369 DVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 ++++ I PG +G ++ + + L + LI Sbjct: 356 ALIRHASIQPGPLLGKVMNQLLALVVEGKVANEEPALLQEAQDLI 400 >gi|282863336|ref|ZP_06272395.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces sp. ACTE] gi|282561671|gb|EFB67214.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces sp. ACTE] Length = 505 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 86/451 (19%), Positives = 170/451 (37%), Gaps = 59/451 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + + +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 55 ADDLARRFREAGFRLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVG 114 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ +ITT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 115 IAFGTVGSQKDGYQIEITTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPE 174 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GGL+DL R ++ G +D LR+LR RF A + + D L A Sbjct: 175 KEFVDPHGGLDDLAARVLRTPGTPEESFSDDPLRMLRAARFAAQL-DFEVAPDVLTAMTD 233 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E+NKLL + +P + + G+ + ++ + L++ Sbjct: 234 MAGRIEIVSAERVREELNKLLLSGHPRKGLGLLVETGLADRVLPELPALRLERDEHHRHK 293 Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 L+ + +A + E D +LR L+ K K Sbjct: 294 DVYEHSLTVLEQAIDLEEEGPDLVLRLAALLHDIGKPKTRRFEKDGRVSFHHHEVVGAKL 353 Query: 284 ------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 + ++ + + P + +L L Sbjct: 354 TRKRLTELKYSNDMVKDVSKLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLDRLHKLTR 413 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL ++ L+ ++ + L G++++K G+ PG Sbjct: 414 SDCTTRNKRKANALSRTYDGLEERIAQLKDQEELDAIRPD---LDGNEIMKILGVGPGPV 470 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +G + + + + ++ L++ Sbjct: 471 IGKAYAFLLELRLENG-PMERDAAIAALKEW 500 >gi|169335807|ref|ZP_02863000.1| hypothetical protein ANASTE_02233 [Anaerofustis stercorihominis DSM 17244] gi|169258545|gb|EDS72511.1| hypothetical protein ANASTE_02233 [Anaerofustis stercorihominis DSM 17244] Length = 439 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 105/440 (23%), Positives = 178/440 (40%), Gaps = 52/440 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + IL N ++ IVGG VRD L+ + +D DI T P M +F + YK IP Sbjct: 7 KEAKIILDKFNNNGYEAYIVGGCVRDLLLGKTPKDYDITTNASPKETMELFKE--YKTIP 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I YGT+ +I ++TT R + R + V F + D RRDFTINA+ + Sbjct: 65 TGIKYGTVTVIINNTPIEVTTFRKEGKYIKNRKPESVEFLSSIEEDLSRRDFTINAMAYN 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ +ID G DL I+ +GD R ED +RILR +RF Y + I+++ L A Sbjct: 125 EKSGLIDLFEGRQDLEKGIIRVVGDGKERFKEDAIRILRAYRFMGRY-DFEIENNTLNAI 183 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L ++ ERI EI ++ E+ + + +F ++E + Sbjct: 184 KENMHLLNNVAKERILPEIKEIFESD------MDINKMDFITVLFPIIKECFHTYQNNKY 237 Query: 251 EAEQVFEWKIDSL--------LRFIVLISWQDKKSIL------------------SMAKK 284 + V E + L+ +L+ K MAK Sbjct: 238 HMQNVGEHTYKTFNNIENVFHLKMTMLLHDIGKVKTKTTDAENTDHFYNHSDISREMAKN 297 Query: 285 ----FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA------ 334 F + + ++ + +K+ +G+++ +K+ +A Sbjct: 298 ILDDFKFDNDTKEKILLLIKNHDKYMAPKNKYVKEKLNEFGEELFFDLIKVRIADDEAKN 357 Query: 335 --LHYNNLTHQD--TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 L +NL F +V+ + ++ + GD ++ G GK VG IL + Sbjct: 358 HELVKDNLKRFRDTEEFAKRVIKNKEPYRISDLKINGDYIISLGFT-GKDVGEILKYLLS 416 Query: 391 EWINSSFQLSQEDLHHLLRK 410 E I + + L L+R+ Sbjct: 417 EVIEDKDKNDKNKLIELVRE 436 >gi|154686492|ref|YP_001421653.1| tRNA CCA-pyrophosphorylase [Bacillus amyloliquefaciens FZB42] gi|166233842|sp|A7Z5Z6|CCA_BACA2 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|154352343|gb|ABS74422.1| Cca [Bacillus amyloliquefaciens FZB42] Length = 396 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 180/400 (45%), Gaps = 23/400 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL L K ++ VGGAVRDS M + D+DIAT+ P+ V R+F +T + Sbjct: 8 ALPILHHLMKAGHQAYFVGGAVRDSYMKRKIGDVDIATSASPNEVERLFKRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 +GT+ ++ + +++TT R++ D R + V F D RRD TINA+ + Sbjct: 64 KEHGTVIVLWEDETYEVTTFRAESEYKDYRRPEAVRFITSLSEDLKRRDLTINAMAMSAE 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++DY GG +D+ + I+ +G+ R ED LR++R RF + G ++ + A IK Sbjct: 124 GELLDYFGGAHDIGQKLIRTVGNPEDRFREDALRMMRAVRFMSQLGFL-LEKETREAVIK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ L +S ER E KLL+ + AI M G+ +E+ + Q++EA Sbjct: 183 DRELLAHVSVERKTVEFEKLLQGASSQEAIQTMVQTGLIQEL-PGLSGYE----QQMLEA 237 Query: 253 EQVFEWKIDS-LLRFIVLISWQD--KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 +D+ R+ L+ + KS + K++ LP ++ + + Q Sbjct: 238 SGFPFSSLDAREERWAALLLFLGLCPKSAEAFLKQWKLPGKVIKKAMQIISVYPAQLE-- 295 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + Y G + + + +KI + + + Q + + + ++G D Sbjct: 296 ----AEAMYRAG-EALFSAVKIGMLKKHKTIDEQKLKEVQSLYEQLPIKSLRDLDISGAD 350 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +++ GK V L ++ + + D+ L Sbjct: 351 LMELRNRRAGKWVAEELRRIEEAVLAGKLPNRKHDIKEWL 390 >gi|330443931|ref|YP_004376917.1| poly A polymerase [Chlamydophila pecorum E58] gi|328807041|gb|AEB41214.1| poly A polymerase [Chlamydophila pecorum E58] Length = 410 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 107/407 (26%), Positives = 185/407 (45%), Gaps = 17/407 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L L ++ VGG VRD LM + DIDIAT P V IFS VI Sbjct: 7 EAAKKVLVKLRNAGYQAYFVGGCVRDMLMGKPMVDIDIATDAPPVIVSTIFSD----VIS 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 ++G I + F++ T R+D TDGR+ + V + D+LRRDF+IN +Y D Sbjct: 63 IGAAFGIIVVKLEGYLFEVATFRNDGQYTDGRHPQQVKFSSMREDALRRDFSINGIYYDP 122 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + K+ D+V G+ D+ + I+ IG R ED LRILR RF + E +D A Sbjct: 123 FEDKLFDFVEGIRDIEKKVIRAIGHPRLRFAEDKLRILRAIRFASSL-EFTLDPATERAL 181 Query: 191 IKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 IK L +S ERIW E+ K++++ +P A+V + + IF ++++I L Sbjct: 182 IKEAPTLVSAVSPERIWQELKKMMKS-HPYQAMVLLLKLKVLVTIFPELRDIPYGILRST 240 Query: 250 IEAEQVFEW-KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 I K +L + L +++ + + + + + +++ + + + Sbjct: 241 IAFLNKLNPQKFPEILLLLPLFQGVPEEATSAAFSRLKVSNKELRLIEAWYKALPHFQNI 300 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD-----TCFILQVLSDIIHWKKPLF 363 S+ + +L + L+IF AL + Q ++ I+ K Sbjct: 301 SMSRVFWAHFLASPSASMF-LEIFSALQKDPSKQQHFIARVQELETRLEKFILRIKTASP 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ D++ GI PG+ +G++L + I L +E + +L++ Sbjct: 360 LISAPDLMAKGIAPGRLLGDLLKEAENLSIEHEC-LDKEKILAILQE 405 >gi|32471688|ref|NP_864681.1| poly A polymerase [Rhodopirellula baltica SH 1] gi|32397059|emb|CAD72363.1| poly A polymerase [Rhodopirellula baltica SH 1] Length = 427 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 173/407 (42%), Gaps = 20/407 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++ + I++ L + + GG VRD+L+ +D D+AT P+ V +F K Sbjct: 21 AAEAVRIITELKDAGFVAVLAGGCVRDALLGRKPKDFDVATDATPESVREVFGKRNTLAF 80 Query: 72 PTSISYGTIKIICRKKYF-----------DITTLRSD-LITDGRYAKVVFTRDWKADSLR 119 S+G I ++ + ++ T R+D +DGR V D +AD++R Sbjct: 81 --GESFGVIGVLPPRSAVTEEPSAKLMPTEVATFRADGNYSDGRRPDSVTYGDAEADAMR 138 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN ++ D + KVIDYVGG+ DL ++ IG A R ED LR+LR RF G Sbjct: 139 RDFTINGMFYDLFESKVIDYVGGIQDLEKGHLRTIGKAVQRFEEDKLRMLRAVRFATTLG 198 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I+ A + ++S ERI +E+ +++ + + + + G+ ++ + Sbjct: 199 -FSIEYKTFAAIQNHASDISVVSGERIGAEMRRVMTSSASDFGLETLVDTGLALHVWPQL 257 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + ++ + S+ I+ + +++ L L + + + + L R + + Sbjct: 258 RSMNWTEYSRAIQTTKHRSFEVAMALALFHL-PGDSIQCLRLLFNDWKLSVAERRAIEAA 316 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 +L + D+ A+ + A + + D Sbjct: 317 LTHAQTITQCDGLPWSRLQPILIDE--DAETIVATARALAPKSRGVARAARSLFGDPNKL 374 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 P +TG D++ G+ PG + +IL + + ++ ++ L Sbjct: 375 NPPPL-VTGADLIANGMRPGPEFKSILQSIRDDQLDGKLTSREDALR 420 >gi|253733296|ref|ZP_04867461.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|258451115|ref|ZP_05699150.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A5948] gi|282921703|ref|ZP_06329420.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9765] gi|304380961|ref|ZP_07363619.1| polyA polymerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253728836|gb|EES97565.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257861170|gb|EEV83983.1| polynucleotide adenylyltransferase region [Staphylococcus aureus A5948] gi|282593965|gb|EFB98954.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9765] gi|304340486|gb|EFM06422.1| polyA polymerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320142702|gb|EFW34505.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 411 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 94/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 193 RIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVTE 251 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + +LI+ K I K L + + ++ Sbjct: 252 AID------------LELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSII 299 Query: 310 IPEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPL 362 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 300 TKEQLKMFVYDYDTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDM 359 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 360 MVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|89052572|ref|YP_508023.1| polynucleotide adenylyltransferase protein [Jannaschia sp. CCS1] gi|88862121|gb|ABD52998.1| Polynucleotide adenylyltransferase protein [Jannaschia sp. CCS1] Length = 379 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 127/406 (31%), Positives = 186/406 (45%), Gaps = 32/406 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W + + L+ VGG VR+ L+ L V DIDI T + P+RVM + Sbjct: 3 LDADWLRRPETGAVFDALDGHG--VWFVGGCVRNGLLGLDVADIDICTNLRPERVMALAE 60 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K +PT I +GT+ ++ ++ITTLR D+ TDGR+A V FT D+ RRDFT+ Sbjct: 61 AAGLKAVPTGIDHGTVTVVSGGLPYEITTLRRDVETDGRHASVAFTDVLAEDAARRDFTM 120 Query: 125 NALYADQQGKVIDYVG-GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KN 181 NALYA + G+V+D G GL+DL R ++FIGDA RI EDYLRILRFFRF A Y + Sbjct: 121 NALYATRGGEVLDPNGDGLSDLHARRVRFIGDADARIAEDYLRILRFFRFHAWYADPSGG 180 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D++ L A G+ LS ER+ +EI LL A +P A+ M G+ + Sbjct: 181 LDAESLAACAAGLDGIAQLSRERVGAEIKTLLRAPDPAPAVAAMDQTGVLAAVLPGASSR 240 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 L L+ + D++ R L +A++ L R L + Sbjct: 241 MLTLLTGLET-----GLTPDAVRRLAALGGD-------DVAERLRLSRSDSKRLTLYRTE 288 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 T L Y +G L + L +T L Sbjct: 289 MGAMTTPG-----ALGYHHGLDAARDILVLRGLLSEQPVTA-------SALHTAKLGATA 336 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 FP+ D+ GK +G+ L + WI+S+F L++ +L + Sbjct: 337 TFPIRAADLPDL---HGKPLGDRLKLLEARWIDSTFTLTKSELLNR 379 >gi|259046862|ref|ZP_05737263.1| poly A polymerase [Granulicatella adiacens ATCC 49175] gi|259036485|gb|EEW37740.1| poly A polymerase [Granulicatella adiacens ATCC 49175] Length = 409 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 94/407 (23%), Positives = 177/407 (43%), Gaps = 34/407 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L K ++ VGG+VRD ++ + D+DIAT+ P+ V +FS T + Sbjct: 19 ALPVLQTLKKAGHEAVFVGGSVRDLVLGKEISDVDIATSATPEEVKSLFSHT----VDVG 74 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ +I + +++TT R++ D R+ V F R + D +RRDFTINAL + Q Sbjct: 75 IEHGTVLVIYHQDSYEVTTFRTEGTYQDFRHPDSVTFVRSLEEDLMRRDFTINALAINDQ 134 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++DY GL DL N I+ +G+ R ED LR++R RF G I+S A Sbjct: 135 EEIVDYFDGLKDLENSIIRCVGNPMERFNEDALRMMRAIRFAGQLG-FTIESKTFNAIRV 193 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L+ ++ ER+ E K++ + + NA + +++ D S + L ++ E Sbjct: 194 LKSNLERVAVERMKVEFEKMIVSLHRSNAFLAFIESDLYQSC-PDFTN-SRETLKKIGE- 250 Query: 253 EQVFEWKIDSLLRFIVLISW---QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 F S+L+ VL ++ + + K + E + + + Sbjct: 251 ---FPVSSMSILQAWVLFAYYNQLSVSELKKVLKNWKSSNEQISETLIGYQTFLKRLDKE 307 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + Y +++ I + L ++ + QV + + G Sbjct: 308 WDSF--MAYECTERIAIEIEGLLPGLGRT----ENHNILTQVYKTLPIHSMQDIQIDG-- 359 Query: 370 VVKYGIPP-------GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +G+ G K+G +L ++ +++ + ++ +R Sbjct: 360 ---FGVKEALKLEKMGPKIGKVLQAVEKAILSNKLKNENHEIVDWIR 403 >gi|325956656|ref|YP_004292068.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus 30SC] gi|325333221|gb|ADZ07129.1| tRNA CCA-pyrophosphorylase [Lactobacillus acidophilus 30SC] Length = 405 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 165/373 (44%), Gaps = 16/373 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L++ V D+DI T+ P+ V +F K+ I T Sbjct: 14 AMPVLRTLEDAGFEAYFVGGSVRDVLLHRHVHDVDITTSAYPEEVKELFDKS----IDTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F ++ D RRDFTINAL D Sbjct: 70 IKHGTVTVLYGGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDMH 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G ++D G+ DL+N I+ +G+ R ED LR++R RF + E ++ A Sbjct: 130 GDIVDLFNGIEDLKNHIIRAVGNPEKRFHEDALRMMRAVRFMSQL-EFKLEEKTEQAIKD 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LK +S ERI E K+ A + + +++ + L Q+ ++ Sbjct: 189 NHELLKKISVERIREEFVKMGLGPFSRQAFQIFLDTQLSEDVPDFAGKKDLLQVYPQLKF 248 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + +++ ++ +S ++ + K + E +I F+ + Sbjct: 249 SPTMETSLWAVIIILLKVSNENISKFMRDWKNSNAMTEKVEQIIKMFDLIADHVPTDYE- 307 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + G+ ++I + + L + + L+ I + G ++K Sbjct: 308 ----LFEAGEDIIINTIDVADIL---GQPVSSEALVDRYLALPIK-TPSELAVDGRFLIK 359 Query: 373 YGIPPGKKVGNIL 385 G+ PG ++G + Sbjct: 360 RGMRPGAQLGRTI 372 >gi|253732099|ref|ZP_04866264.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724146|gb|EES92875.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 411 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 94/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDTGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 193 RTQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVTE 251 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + +LI+ K I K L + + ++ Sbjct: 252 AID------------LELLIAIASVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSII 299 Query: 310 IPEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPL 362 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 300 TKEQLKMFVYDYDTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDM 359 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 360 MVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|15605437|ref|NP_220223.1| polyA polymerase [Chlamydia trachomatis D/UW-3/CX] gi|166154921|ref|YP_001653176.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|3329159|gb|AAC68299.1| Poly A Polymerase [Chlamydia trachomatis D/UW-3/CX] gi|165930909|emb|CAP06471.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|297748835|gb|ADI51381.1| Poly(A) polymerase [Chlamydia trachomatis D-EC] gi|297749715|gb|ADI52393.1| Poly(A) polymerase [Chlamydia trachomatis D-LC] Length = 410 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 99/403 (24%), Positives = 171/403 (42%), Gaps = 15/403 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ VGG+VRD L+ ++++DIAT P V IF T + Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G DL + I+ IG R LED LRILR RF A G +D A IK Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIK 183 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L P ++ + + +F +++ S L I Sbjct: 184 ELPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKVLPILFPELKVSSSGFLRSAIA 242 Query: 252 -AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ + +I + + L DK+ L + + + L ++ + Sbjct: 243 FAQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----LT 366 + + + + + I + + + + + + ++ Sbjct: 303 DKFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVS 362 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D++ GI PG+ +G +L + I +E + LL+ Sbjct: 363 AQDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404 >gi|325109887|ref|YP_004270955.1| polynucleotide adenylyltransferase region [Planctomyces brasiliensis DSM 5305] gi|324970155|gb|ADY60933.1| Polynucleotide adenylyltransferase region [Planctomyces brasiliensis DSM 5305] Length = 426 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 103/422 (24%), Positives = 189/422 (44%), Gaps = 27/422 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ L + ++ GG VRD L+ D D+AT PD+V ++F R + + Sbjct: 9 AVEVVQRLVEAGYQALWAGGCVRDFLLEGEPADFDVATDARPDQVRKLFG--RRRTLAVG 66 Query: 75 ISYGTIKIICRKK--YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 S+G I ++ K+ ++ T R+D +DGR + + D+LRRDFTIN ++ D Sbjct: 67 ESFGVIIVLGPKEAGQVEVATFRTDATYSDGRRPDAITFSTPQEDALRRDFTINGMFYDP 126 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++IDYVGG +DL R ++ IGD H RI ED LR+LR RF A + + +D ++A Sbjct: 127 LAEELIDYVGGQSDLEARIVRAIGDPHARIEEDKLRMLRALRFAARF-DFVLDEATMLAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-----Q 245 ++++S ERI E K+L + + + G+ + ++ + D Sbjct: 186 RTHGPQIEVVSQERITDEFRKMLRHPSRARGMEMIAESGLLTHVLPEIIDCWGDGNYATN 245 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVL-----ISWQDKKSILS---MAKKFSLPREIRY---F 294 ++++ ++V +++ + + F L QD+ + K+ L + + Sbjct: 246 TLEMLQLQRVAGFQLAAAIAFRCLSERVATGPQDRHRASELDVLGKRLRLSNQECDDISW 305 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 L + N + L++ E+K L +I ++ + + + + Q L Sbjct: 306 LAGHYRQIQNAEALTLAELKPLLADSRRDQLIEFARLADVVERH--APRGATYCEQYLQQ 363 Query: 355 IIHWKKPLFP-LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 P LTG D++ G PGK +L + +N + S E L +L+ Sbjct: 364 TPQELLDPPPLLTGGDLIAMGQRPGKHFATVLAEVRAAQLNERLE-SPEQAMALANELLK 422 Query: 414 SS 415 S Sbjct: 423 QS 424 >gi|229084643|ref|ZP_04216911.1| CCA-adding enzyme [Bacillus cereus Rock3-44] gi|228698666|gb|EEL51383.1| CCA-adding enzyme [Bacillus cereus Rock3-44] Length = 384 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 170/390 (43%), Gaps = 15/390 (3%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + K ++ VGG+VRD ++N + DIDIAT+ LPD VM +F + +P + +GT+ Sbjct: 1 MKKHGHEAYFVGGSVRDFIINRPIGDIDIATSALPDEVMHLFPRH----VPVGLEHGTVI 56 Query: 82 IICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 ++ +++TT R++ D R V F R + D RRDFT+NA+ +++G +ID Sbjct: 57 VVQEGVPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGAIIDLF 116 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 G +R + I +G+A R ED LR++R RF + G +++ A K L+ Sbjct: 117 SGQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLG-FSLEEKTKQAIEKYGHLLEH 175 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 ++ ERI E KLL + + + +F + +Q L FE Sbjct: 176 IAIERITVEFEKLLTGTCCVKGLQELVETKLFTHL-PYLQMSEERLLEAAQYNWGYFETD 234 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 I++ F+ I + L +++ + +++ +KT + Sbjct: 235 IEAWAFFLHCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLAIRARKTKHWDAVFLYKTS 291 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP-PG 378 +M ++ + Y+ + + + + ++G+D++ + PG Sbjct: 292 LPTALMAERVYRVIIKKYDMSF---VNHVQSLFDSLSIHNRQEMKISGNDLLGWTEKTPG 348 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 V +L ++E + + +E + L Sbjct: 349 PWVSEVLQKIEEEILQERLENKKEKIREWL 378 >gi|322437026|ref|YP_004219238.1| metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX9] gi|321164753|gb|ADW70458.1| metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX9] Length = 456 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 90/458 (19%), Positives = 168/458 (36%), Gaps = 69/458 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ GG VRD L+ + +D D+AT+ PD++ +F +T + Sbjct: 8 ARKIVQTLRSAGHQAFFAGGCVRDLLLGKTPKDFDVATSATPDQITALFPRT----LQVG 63 Query: 75 ISYGTIKIICRKKYF----DITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALY 128 +G I + + ++ T R D +DGR V F+ D + D LRRDFTIN + Sbjct: 64 AHFGVILVQMDVEGEPTSTEVATFRHDGAYSDGRRPDAVRFSTDPREDVLRRDFTINGML 123 Query: 129 ADQ-----QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 D ++D+VGG NDL + I+ IG R ED LR+LR RF A ID Sbjct: 124 LDPFAEGSDNAILDFVGGRNDLAVKIIRTIGSPDTRFEEDKLRMLRAVRFAARL-SFAID 182 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + A + + +S+ERI E+ +L N A +Y G+ I + + + Sbjct: 183 PNTAAAITRHAAEIFQVSNERIRDELTLMLTEGNAHRAFELLYQTGLLHHILPEAERMI- 241 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQ------------------------------ 273 ++ + + D + ++L+ Sbjct: 242 -----GVQQPPQYHPEGDVWVHTLLLLDHLFAGASPTLAWGMLLHDIGKPATFQPPNPAK 296 Query: 274 -------------DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT---LSIPEIKKLF 317 + S+ + + +++ + + +K+ Sbjct: 297 PGDRIRFNGHVETGVRIAESILARLRFSNDDTAQILALIQNHMRFGDILHMKQSTLKRFL 356 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 L + +A + + L D D + L LTG D++ G P Sbjct: 357 RLPHFEEHLALHRADCLSSHARLELYDFAKTQYESHDPEQIRPTLL-LTGRDLIAAGYRP 415 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + ++L + + ++ +H ++++ A Sbjct: 416 SPQFKSMLERAEDAQLEGILHSLEDAIHLIIKEFGAPP 453 >gi|283470670|emb|CAQ49881.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trnacca-pyrophosphorylase) (trna-nt) [Staphylococcus aureus subsp. aureus ST398] Length = 400 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 94/405 (23%), Positives = 166/405 (40%), Gaps = 26/405 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + I ++ A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAAERFQEDALRMIRCLRFQSQL-SFEIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEHLDMNQINVT- 239 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 240 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 289 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHHLPMHNRKDMM 349 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G + G + ++L + + + ++ + Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWV 394 >gi|308174036|ref|YP_003920741.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307606900|emb|CBI43271.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328552838|gb|AEB23330.1| tRNA CCA-pyrophosphorylase [Bacillus amyloliquefaciens TA208] gi|328912366|gb|AEB63962.1| tRNA nucleotidyltransferase [Bacillus amyloliquefaciens LL3] Length = 396 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 177/399 (44%), Gaps = 21/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + IL L K ++ VGGAVRDS M + D+DIAT+ P+ V R+F +T + Sbjct: 8 ALPILHHLMKAGHQAYFVGGAVRDSYMKRKIGDVDIATSASPNEVERLFERT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 +GT+ ++ + + +++TT R++ D R + V F D RRD TINA+ + Sbjct: 64 KEHGTVIVLWKDETYEVTTFRAESEYKDYRRPEAVRFITSLSEDLKRRDLTINAMAMSAE 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++DY GG +D+ + I+ +G+ R ED LR++R RF + G ++ A IK Sbjct: 124 GELLDYFGGAHDIGKKLIRTVGNPEDRFREDALRMMRAVRFMSQLG-FVLEEKTKKAVIK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ L +S ER E KLL + AI M G+ + ++ +S + + + Sbjct: 183 DRELLAHVSVERKTVEFEKLLLGTSSNEAIQTMVQTGLIQ----ELPGLSGYEQQMLEAS 238 Query: 253 EQVFEWKIDSLLRFIVLISWQD--KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E F R+ L+ + K+ K++ LP ++ + + Q Sbjct: 239 EFSFSSLDAREERWAALLLFLGLSPKNAEPFLKQWKLPGKVIKGAVRIISVYPAQLE--- 295 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + Y G + + + +KI + + + Q + + + ++G D+ Sbjct: 296 ---AEAMYRAG-EALFSAVKIGMLKKHKTIDEQKLKEVQSLYEQLPIKSLRDLDISGADL 351 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +++ GK V L ++ + + D+ L Sbjct: 352 MEFRNRRAGKWVAEELSRIEEAVLAGKLPNRKHDIKEWL 390 >gi|315498160|ref|YP_004086964.1| polynucleotide adenylyltransferase region [Asticcacaulis excentricus CB 48] gi|315416172|gb|ADU12813.1| Polynucleotide adenylyltransferase region [Asticcacaulis excentricus CB 48] Length = 409 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 116/373 (31%), Positives = 179/373 (47%), Gaps = 16/373 (4%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 VGG VRD +M + D+D++T + PD S + +PT ++GTI + + Sbjct: 30 VRFVGGCVRDVVMGRTPGDLDLSTQLTPDATEAALSAASIRHVPTGKAFGTITAVIDGQP 89 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG-GLNDLRN 147 F+IT+LR D+ TDGR A V +T DW D+ RRD +NALYAD +G+V D G G +D R Sbjct: 90 FEITSLREDVETDGRRAVVSYTTDWSRDAQRRDLYLNALYADIRGEVFDPTGQGFDDARA 149 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 ++ IGDA RI EDYLRILRFFRF A +G +D+ L A + + G+ LS ERI Sbjct: 150 ARVRLIGDAETRIREDYLRILRFFRFSASHGT-GLDAASLSACVALRAGIDSLSGERIQQ 208 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFI 267 E+ KLL +P+N + M G+ + E F D + R I Sbjct: 209 ELFKLLGIADPVNVVRRMTETGVMAHVVPGAS-------VNAERVEAGFPLTSDPIQRLI 261 Query: 268 VLISWQD-KKSILSMAKKFSLPREIRYFL-ISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 +L+ Q +++ ++ + L + L + C T S+ +++ Y YG + Sbjct: 262 ILVGGQGWGETLTALILRLRLSSRMADRLSAAAVACAEVDITASLAALRRGLYRYGRHAI 321 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNIL 385 L + + ++ + P+FPL ++ G+ PG ++G L Sbjct: 322 SDGLVL-----RGAEAGLSPEAWKALDQNLKKIEVPVFPLKSARLISIGLAPGPELGQTL 376 Query: 386 VHCKQEWINSSFQ 398 + EWI F Sbjct: 377 RRIEAEWIAHDFS 389 >gi|255311533|ref|ZP_05354103.1| polyA polymerase [Chlamydia trachomatis 6276] gi|255317834|ref|ZP_05359080.1| polyA polymerase [Chlamydia trachomatis 6276s] Length = 410 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 99/403 (24%), Positives = 171/403 (42%), Gaps = 15/403 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ VGG+VRD L+ ++++DIAT P V IF T + Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G DL + I+ IG R LED LRILR RF A G +D A IK Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPRQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIK 183 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L P ++ + + +F +++ S L I Sbjct: 184 ELPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKVLPILFPELKVSSSGFLRSAIA 242 Query: 252 -AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ + +I + + L DK+ L + + + L ++ + Sbjct: 243 FAQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----LT 366 + + + + + I + + + + + + ++ Sbjct: 303 DKFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVS 362 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D++ GI PG+ +G +L + I +E + LL+ Sbjct: 363 AQDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404 >gi|269839869|ref|YP_003324562.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermobaculum terrenum ATCC BAA-798] gi|269791599|gb|ACZ43739.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermobaculum terrenum ATCC BAA-798] Length = 484 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 95/439 (21%), Positives = 175/439 (39%), Gaps = 51/439 (11%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPTSISYG 78 + + VGG VRDSL+ VQ++D AT+ P+ + R+ + R V +G Sbjct: 29 KQFTEAGHELYAVGGCVRDSLLGKEVQELDFATSAHPEEIKRLLAPLRPDSVYTVGERFG 88 Query: 79 TIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVI 136 TI I +ITT R + + D R +V F + D RRDFT+NA+ D G++I Sbjct: 89 TIGAIFGPYRVEITTYRGEWYSPDSRKPEVTFGISLEEDLSRRDFTVNAIAMDIPSGRLI 148 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D GG+ DL ++ I+ +GD R +D LR++R RF A+ G K I+ A + Sbjct: 149 DPFGGVEDLHSKVIRAVGDPDARFRDDPLRLMRAVRFAANLGFK-IEPRTAEAIRRHAAQ 207 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL---------DQLS 247 + +S ER+ E+ ++L P AI + + G+ + I +V E+ D Sbjct: 208 ICKISIERVRDELTRMLTGPAPDVAIAALVDLGLMQYIVPEVVELKQVSTGGGKHKDIFI 267 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------ILSMAKKFS 286 ++ + D ++R+ L+ K + + Sbjct: 268 HTLKVVR--NTPPDLVIRWAALLHDIAKPRTFGIRDGKVHFDHHETIGAKMAEEILSRLH 325 Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH---- 342 R+ + + + + +L+ LAL ++T Sbjct: 326 YDRQTIEAVAKVVRMHTQANSYDPEVWTDGAVRRLVREAGDELEPLLALSQADITSYRRQ 385 Query: 343 ---------QDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392 ++ +Q L + ++ PL G+D+++ +G PG + + + Sbjct: 386 KVEAGVQRVRELRERIQRLEEEAAIRELRPPLDGNDLMRIFGRGPGPWIKPLKNYLLDLV 445 Query: 393 INSSF-QLSQEDLHHLLRK 410 I+ ++ L+R+ Sbjct: 446 IDGQLAPDDRQTAERLVRE 464 >gi|27573943|pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme gi|27573944|pdb|1MIV|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme gi|27573945|pdb|1MIW|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme In Complex With Atp gi|27573946|pdb|1MIW|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme In Complex With Atp Length = 404 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 95/401 (23%), Positives = 171/401 (42%), Gaps = 16/401 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + I+ L + + VGGAVRD L+ + D+DIAT+ LP+ V IF KT I Sbjct: 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVXAIFPKT----IDV 62 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 +GT+ ++ + K +++TT ++D D R + V F R + D RRDFT NA+ D+ Sbjct: 63 GSKHGTVVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTXNAIAXDE 122 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +ID GG +R R I+ +G+A R ED LR R RF + G + D A + Sbjct: 123 YGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRXXRAVRFVSELG-FALAPDTEQAIV 181 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L +S ER E KLL A+ + G+ + ++ + + Sbjct: 182 QNAPLLAHISVERXTXEXEKLLGGPFAARALPLLAETGLNAYL----PGLAGKEKQLRLA 237 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 A + W R+ +L + + + LP ++ + + Sbjct: 238 AAYRWPWLAAREERWALLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRPEAW 297 Query: 312 EIKKLFYLYGDKVM-IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 ++LF ++ + + ++ H+ + + + + K + G DV Sbjct: 298 TNEQLFSAGLERALSVETVRAAFTGAPPGPWHEK---LRRRFASLPIKTKGELAVNGKDV 354 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +++ G P G V L + +N + +E ++ L + Sbjct: 355 IEWVGKPAGPWVKEALDAIWRAVVNGEVENEKERIYAWLXE 395 >gi|15618754|ref|NP_225040.1| Poly A polymerase [Chlamydophila pneumoniae CWL029] gi|15836378|ref|NP_300902.1| poly A polymerase [Chlamydophila pneumoniae J138] gi|16752194|ref|NP_445561.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39] gi|33242205|ref|NP_877146.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183] gi|4377160|gb|AAD18983.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029] gi|7189937|gb|AAF38800.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39] gi|8979219|dbj|BAA99053.1| poly A polymerase [Chlamydophila pneumoniae J138] gi|33236716|gb|AAP98803.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183] Length = 410 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 111/407 (27%), Positives = 184/407 (45%), Gaps = 17/407 (4%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L L ++ VGG VRD LMN ++DIDIAT P V IF VI Sbjct: 7 EAAKKVLIKLRNAGYQAYFVGGCVRDMLMNRPLEDIDIATNASPTIVSTIFPD----VIS 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +++G I + + F++ T RSD DGR+ + + D+LRRDFT+N +Y D Sbjct: 63 IGVAFGIIVVKQDGRLFEVATFRSDGEYKDGRHPDRIIFSSMREDALRRDFTVNGMYYDP 122 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + KV D+V G D+ + I+ IG R ED LRILR RF + G +D A Sbjct: 123 FEDKVFDFVEGTRDIEKKVIRAIGHPRLRFSEDKLRILRAIRFSSSLG-FTLDPTTERAI 181 Query: 191 IKAKKGL-KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 IK L +S ERIW E+ K+L+ + P A+ + + IF ++++I L Sbjct: 182 IKEAPALVNSVSPERIWQELKKMLK-RQPYGALSLLLKLKVLIFIFPELRDIPYSLLRTT 240 Query: 250 IEAEQVFEWKIDS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 IE + F +L + L +++ + + + + S++ + + Sbjct: 241 IEFARKFNPTHFPEILFLLPLFQGVSEEAATVAFGRLRISNKELKLIESWYEALPHFQNQ 300 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS-----DIIHWKKPLF 363 S + +L + L++F AL + Q +Q L I+ K Sbjct: 301 SGNRVFWAHFLASPTAPLF-LELFSALQKDPSRQQHFISRVQELESRLEQFILRIKTSSP 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ D++ GI PG+ +G++L + I + L +E + LL++ Sbjct: 360 VVSAPDLIAKGISPGRLLGDLLREAEILSIENEC-LDKEKILLLLQE 405 >gi|76789444|ref|YP_328530.1| polyA polymerase [Chlamydia trachomatis A/HAR-13] gi|237803134|ref|YP_002888328.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT] gi|237805055|ref|YP_002889209.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT] gi|76167974|gb|AAX50982.1| polyA polymerase [Chlamydia trachomatis A/HAR-13] gi|231273355|emb|CAX10270.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274368|emb|CAX11163.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT] Length = 410 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 171/403 (42%), Gaps = 15/403 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ VGG+VRD L+ ++++DIAT P + IF T + Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIITTIFPDT----LSIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G DL + I+ IG R LED LRILR RF A G +D A IK Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIK 183 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L P ++ + + +F +++ S L I Sbjct: 184 ELPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKVLPILFPELKVSSSGFLRSAIA 242 Query: 252 -AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ + +I + + L DK+ L + + + L ++ + Sbjct: 243 FAQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----LT 366 + + + + + I + + + + + + ++ Sbjct: 303 DKFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVS 362 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D++ GI PG+ +G +L + I +E + LL+ Sbjct: 363 AQDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404 >gi|254831494|ref|ZP_05236149.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 10403S] Length = 393 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 170/399 (42%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +DS+ A Sbjct: 124 FALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQL-DFQLDSETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVI 250 L+ S ERI E K+++ A+ + + + ++ +L + Sbjct: 183 QIGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVE-METYLPGLKGEKKALTEFGSWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ + I ++ L+ ++ + K + LP + + K + Sbjct: 242 WGKRTTDDAI-----WLGLVVTVQPNNVNAFLKAWKLPNNTIQLVSKAYQYALKMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 AEE---LYHAGKAVFSLVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 350 LKWSGESAGPWVKETLDKLECGVLSNEINNEKNQIKRWL 388 >gi|257791803|ref|YP_003182409.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Eggerthella lenta DSM 2243] gi|257475700|gb|ACV56020.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Eggerthella lenta DSM 2243] Length = 465 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 98/446 (21%), Positives = 167/446 (37%), Gaps = 50/446 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + L ++ IVGG VRD+L+ DIDIAT V R+F Y+ T Sbjct: 20 LAAFDALENAGFETWIVGGYVRDALLGRPSSDIDIATQAHWQDVQRVFEGQGYRTHETGT 79 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQG 133 ++GT+ +I ++ ++TT RSD D R+ +V F R D RRDFT+NAL Sbjct: 80 AHGTLTVIVDEQALEVTTYRSDGAYADARHPNQVSFVRTIAEDLARRDFTMNALAYHPAR 139 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D GG DL + I+ +GD R ED LR+LR RF A G ID + + Sbjct: 140 GLFDPYGGHADLEAQIIRAVGDPDRRFSEDALRMLRACRFAAELG-FAIDPNTFEGMLAN 198 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 K L +S++RI E+ +LL ++ A+ + + + ++ + + Sbjct: 199 KGLLPRISTQRITHELQRLLLGEHAGRALTATVD--VLAAVLPELVAMKGFEQRTPYHIY 256 Query: 254 QVFEW--------KIDSLLRFIVLISWQDKKS----------------------ILSMAK 283 V E L+R+ L K + + Sbjct: 257 DVLEHTARVLDGVPPYPLVRWAALFHDMGKPAAFFTDEDGTGHFYGHAAISVMLARGIMD 316 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + +L +++ + + + +K+ G + L + Q Sbjct: 317 RLALSSAFAAQVLTLVERHDDVIDRTPKAVKRALSRLG--GNVELFAALCDLKRGDARGQ 374 Query: 344 ---------DTCFILQVLSDI----IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 D + ++LS+I + + G DV++ G+P G VG L Sbjct: 375 APRCIDRVSDADELERILSEILAADEAFSLKKLAIDGRDVIELGVPQGPLVGLALSDALD 434 Query: 391 EWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ L + A + Sbjct: 435 AVMDERIDNEACALRAFIEGWRAEHE 460 >gi|47094230|ref|ZP_00231942.1| polyA polymerase [Listeria monocytogenes str. 4b H7858] gi|226224509|ref|YP_002758616.1| tRNA CCA-adding enzyme [Listeria monocytogenes Clip81459] gi|254825600|ref|ZP_05230601.1| polyA polymerase [Listeria monocytogenes FSL J1-194] gi|254931924|ref|ZP_05265283.1| polyA polymerase [Listeria monocytogenes HPB2262] gi|255520919|ref|ZP_05388156.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J1-175] gi|259585845|sp|C1KWK5|CCA_LISMC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|47017402|gb|EAL08223.1| polyA polymerase [Listeria monocytogenes str. 4b H7858] gi|225876971|emb|CAS05680.1| Putative tRNA CCA-adding enzyme [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583476|gb|EFF95508.1| polyA polymerase [Listeria monocytogenes HPB2262] gi|293594843|gb|EFG02604.1| polyA polymerase [Listeria monocytogenes FSL J1-194] gi|328466255|gb|EGF37412.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 1816] gi|332312346|gb|EGJ25441.1| CCA-adding enzyme [Listeria monocytogenes str. Scott A] Length = 393 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 174/399 (43%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF + T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQTS----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQVI 250 + L+ S ERI E K+++ K AI + + +++ +L + + Sbjct: 183 QIELLQHTSVERITVEWLKMMKGKAAKRAIELLLKVK-METYLPGLKDEKSALSEFASWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ E I ++ L+ ++ + K + LP + + + N K + Sbjct: 242 WEKRTTEESI-----WLGLVVAVKPNNVNAFLKAWKLPNKTIQLVNKAYQYALNMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 TEE---LYHAGKAVFSLVNELNVIRGQENNQHK----VSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 350 LKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388 >gi|15924447|ref|NP_371981.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus Mu50] gi|15927038|ref|NP_374571.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus N315] gi|156979776|ref|YP_001442035.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus Mu3] gi|162036297|ref|YP_001246886.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus JH9] gi|162077203|ref|YP_001316681.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus JH1] gi|253315966|ref|ZP_04839179.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006244|ref|ZP_05144845.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269203082|ref|YP_003282351.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus ED98] gi|295407207|ref|ZP_06817007.1| tRNA nucleotidyltransferase [Staphylococcus aureus A8819] gi|296275345|ref|ZP_06857852.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus MR1] gi|297244631|ref|ZP_06928514.1| CCA-adding enzyme [Staphylococcus aureus A8796] gi|73619851|sp|Q99U32|CCA_STAAM RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619853|sp|Q7A5K2|CCA_STAAN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166233880|sp|A7X2F4|CCA_STAA1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|13701255|dbj|BAB42550.1| SA1290 [Staphylococcus aureus subsp. aureus N315] gi|14247228|dbj|BAB57619.1| putative poly(A) polymerase [Staphylococcus aureus subsp. aureus Mu50] gi|156721911|dbj|BAF78328.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|262075372|gb|ACY11345.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus ED98] gi|285817137|gb|ADC37624.1| tRNA nucleotidyltransferase [Staphylococcus aureus 04-02981] gi|294967920|gb|EFG43949.1| tRNA nucleotidyltransferase [Staphylococcus aureus A8819] gi|297178661|gb|EFH37907.1| CCA-adding enzyme [Staphylococcus aureus A8796] gi|312829849|emb|CBX34691.1| poly A polymerase head domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329727606|gb|EGG64062.1| tRNA adenylyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329731308|gb|EGG67674.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus aureus subsp. aureus 21193] Length = 400 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I + A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIAMETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + +++ ++Q++ Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEQLDMNQINVT- 239 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 240 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 289 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 349 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|297207883|ref|ZP_06924316.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911968|ref|ZP_07129411.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|296887457|gb|EFH26357.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886214|gb|EFK81416.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus TCH70] Length = 411 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 93/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 193 RIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVTE 251 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + +LI+ K I K L + + ++ Sbjct: 252 AID------------LELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSII 299 Query: 310 IPEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPL 362 E K+F Y Y ++ + + N++ + + + +H +K + Sbjct: 300 TKEQLKMFVYDYDTHLIKNVMVAADVIKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDM 359 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 360 MVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|254827210|ref|ZP_05231897.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL N3-165] gi|258599593|gb|EEW12918.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL N3-165] Length = 393 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 171/399 (42%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +DS+ A Sbjct: 124 FALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQL-DFQLDSETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVI 250 L+ S ERI E K+++ A+ + + + ++ +L + Sbjct: 183 QIGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVE-METYLPGLKGEKKALTEFGSWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ + I ++ L+ ++ + K + LP + + + K + Sbjct: 242 WGKRTTDDAI-----WLGLVITVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 AEE---LYHAGKAVFSLVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 350 LKWSGESAGPWVKETLDKLECGVLSNEINNEKNQIKRWL 388 >gi|49483646|ref|YP_040870.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus MRSA252] gi|295427967|ref|ZP_06820599.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|73619857|sp|Q6GGV2|CCA_STAAR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|49241775|emb|CAG40466.1| poly A polymerase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|295128325|gb|EFG57959.1| tRNA nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315195355|gb|EFU25742.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus CGS00] Length = 400 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 123 TANKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVT- 239 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 240 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNALPSIIT 289 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMM 349 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 350 VNGGVLMAHLNAKSGPWLKDLLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|168699746|ref|ZP_02732023.1| metal dependent phosphohydrolase [Gemmata obscuriglobus UQM 2246] Length = 410 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 98/407 (24%), Positives = 171/407 (42%), Gaps = 17/407 (4%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 + L + GG VRD + L +D D+AT+ P+++ +F + +G Sbjct: 2 VRTLQSAGFTALWAGGCVRDEFLGLVPEDYDVATSARPEQLRPLFRRRN----EIGAHFG 57 Query: 79 TIKIICRKK------YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 +++I KK ++ + RSD TDGR V + D+ RRDFT+N ++ D Sbjct: 58 VVQVIGPKKADGTWHTIEVASFRSDGAYTDGRRPDTVTFSTPEEDAQRRDFTVNGMFFDP 117 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +++D+VGG DL + ++ IGD R ED LRILR R +G ID A+ Sbjct: 118 VRNELLDFVGGRADLDAKVLRAIGDPFARFTEDKLRILRAARMATRFG-LAIDPTTRDAA 176 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + + ++S+ER+ E+ KL N + + G+ + I ++ S D+ S + Sbjct: 177 QQMAPQVSVVSAERVAEELRKLFAHPNRTRGLALLRELGLIEPILPELTP-SADRASAAL 235 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A ++ L F V + + +A++ L L + Sbjct: 236 AALSEVGGRLPFPLAFAVTLHAVGRAVTERVAERLKLSNVESDRLCWLVANQSVLTDAEV 295 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALH-YNNLTHQDTCFILQVLSDIIHWKKPLFP-LTGD 368 KL L + L + AL + F +VL D + P LTG Sbjct: 296 MRPSKLKPLLVHPGIDDLLALHRALATATGGSLAPVEFCTRVLRDTPPEELNPPPVLTGA 355 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 D++ G+ PG +L ++ + ++E H L+ +L+A Sbjct: 356 DLIARGLKPGPAFKRLLDAVREAQLEGR-AATKEQGHALVTRLLAEP 401 >gi|148666982|gb|EDK99398.1| tRNA nucleotidyl transferase, CCA-adding, 1, isoform CRA_c [Mus musculus] Length = 296 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 91/257 (35%), Positives = 144/257 (56%), Gaps = 4/257 (1%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 41 PEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQ 100 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 101 SAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 160 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ ++ + Sbjct: 161 INSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGD 220 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ G+ I L Sbjct: 221 HDHETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLGVAPHIGLPANA- 279 Query: 242 SLDQLSQVIEAEQVFEW 258 +L++ ++V + + F Sbjct: 280 NLEEFNKVSKNVEGFSP 296 >gi|82751056|ref|YP_416797.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus RF122] gi|123549198|sp|Q2YY49|CCA_STAAB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|82656587|emb|CAI81010.1| probable PolyA polymerase family protein [Staphylococcus aureus RF122] Length = 400 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 92/410 (22%), Positives = 167/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNNENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + I ++ A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAAERFQEDALRMIRCLRFQSQL-SFEIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVT- 239 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL-S 309 + L I ++S + I K L + + ++ + Sbjct: 240 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNALPSIFT 289 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 ++K Y Y ++ + L N++ + + + +H +K + Sbjct: 290 KEQLKIFVYDYDTNLIKNIMVAADVLKANDIQGHEPLIVNLQTIDETLHHLPMHNRKDMM 349 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|315129172|gb|EFT85167.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus CGS03] Length = 400 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 94/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I + A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIAMETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + +++ ++Q++ Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEQLDMNQINVTE 240 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + +LI+ K I K L + + ++ Sbjct: 241 PID------------LELLIAIASVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSII 288 Query: 310 IPEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPL 362 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 289 TKEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDM 348 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 349 MVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|229004419|ref|ZP_04162169.1| CCA-adding enzyme [Bacillus mycoides Rock1-4] gi|228756836|gb|EEM06131.1| CCA-adding enzyme [Bacillus mycoides Rock1-4] Length = 366 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 169/378 (44%), Gaps = 15/378 (3%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + + ++ VGG+VRD ++N + DIDIAT+ LP+ VM +F + +P + +GT+ Sbjct: 1 MKQHGHEAYFVGGSVRDFIINRPIGDIDIATSALPEEVMHLFPRH----VPVGLEHGTVI 56 Query: 82 IICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYV 139 ++ +++TT R++ D R V F R + D RRDFT+NA+ +++G +ID Sbjct: 57 VVQEGIPYEVTTFRTESDYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMNEEGNIIDLF 116 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 G +R + I +G+A R ED LR++R RF + G ++ A + L+ Sbjct: 117 AGQEAIRKQEIATVGNAADRFQEDALRMMRGIRFVSTLGFF-LEEQTKRAIEEYGHLLEH 175 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 ++ ERI E KLL K +N + + + + +Q L + FE Sbjct: 176 IAIERITVEFEKLLTGKYCVNGLQQLVETKLVTHL-PYLQMSEERILKAMQYNWDFFETD 234 Query: 260 IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 I++ F+ I + L +++ + +++ ++KT S + Y Sbjct: 235 IEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVILAIRSRKTKSWDAV--FLYK 289 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP-PG 378 G + +++ A+ + + + + ++G+D++ + PG Sbjct: 290 TGLHTALMAERVYQAIIK-KYDIFSVNQVQSLFDSLSIHNRQEMKVSGNDLLGWTEKTPG 348 Query: 379 KKVGNILVHCKQEWINSS 396 V +L ++E + Sbjct: 349 PWVAEVLQRIEEEILQER 366 >gi|261367214|ref|ZP_05980097.1| poly(A) polymerase [Subdoligranulum variabile DSM 15176] gi|282570813|gb|EFB76348.1| poly(A) polymerase [Subdoligranulum variabile DSM 15176] Length = 456 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 102/462 (22%), Positives = 180/462 (38%), Gaps = 59/462 (12%) Query: 5 VQHKWFHDS-DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 ++ + H D + +L L+ + +VGG VRDSL+ D DI T+ PD++ +F Sbjct: 1 MKREIIHLPRDAMWLLQTLHDAGYSAYVVGGCVRDSLLGRRPGDWDICTSARPDQLRALF 60 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRD 121 + ++I T +GT+ ++ ++ITT R D D R+ KV F + D RRD Sbjct: 61 ADQ--QLILTGEKHGTVGVVLHGSPYEITTYRLDGTYRDHRHPDKVQFVSELAEDLARRD 118 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FTINA+ VID GG DL I+ +GD R ED LRILR RF A + Sbjct: 119 FTINAMAYAPGEGVIDLCGGRKDLAAGIIRCVGDPEARFAEDALRILRALRFAARL-DFA 177 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN--GGIFKEIFLDV- 238 +D A+ +A+ L+ +S+ERI++E++ LL A+ + G E+ + Sbjct: 178 LDPATEAAAREARDSLQAVSAERIYTELDGLLMAQYAGKTLAQYGEILAGAVPEVGPCIG 237 Query: 239 -----QEISLDQLSQVIEAEQVFEWKID-----SLLRFIVLISW---------------- 272 + D A + + +LR+ + Sbjct: 238 CTQPGRWHCFDVWQHTAAAVTALDLRGQDTRGARVLRWATFLHDIAKPLCRSVGPDGAAH 297 Query: 273 ------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 + ++ ++ P + + + I K YG Sbjct: 298 FKGHNQRGAAVARAILRRLKAPSYLLEGAVGLIAIHDAPLPEGDAAILKCLNRYG----A 353 Query: 327 AKLKIFLALHYNNL-----------THQDTCFILQVLSDIIH---WKKPLFPLTGDDVVK 372 L+ AL Y +L +D ++++ + + G D+++ Sbjct: 354 VSLRRLCALKYADLDAHALTPEVACRREDVTIFENRMTELSKNGCFTIRQLAVNGSDLME 413 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 G+P G VG +L + + ++ L ++L+ Sbjct: 414 AGLPAGPAVGRVLHALLSAVMEGRIENQRDTLLREAQRLLRE 455 >gi|290959021|ref|YP_003490203.1| RNA nucleotidyltransferase [Streptomyces scabiei 87.22] gi|260648547|emb|CBG71658.1| putative RNA nucleotidyltransferase [Streptomyces scabiei 87.22] Length = 482 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 84/449 (18%), Positives = 163/449 (36%), Gaps = 58/449 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P+ V++I + Sbjct: 29 ADDLARRFQQAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADALWEVG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 89 IAFGTVGAQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPE 148 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + ID GGL DL R ++ G +D LR++R RF A G + + + A Sbjct: 149 KEFIDPHGGLEDLSARVLRTPGTPEDSFSDDPLRMMRAARFAAQLG-FEVAPEVVSAMTA 207 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 L+I+S+ER+ E+NKL+ + +P + + G+ + + ++ + L++ Sbjct: 208 MAGRLEIVSTERVRDELNKLILSAHPREGLSLLVETGLAEHVLPELPALRLERDEHHRHK 267 Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 L + +A + + D LR L+ K + Sbjct: 268 DVYDHTLIVLEQAIALEDAGPDLTLRLAALLHDIGKPRTRRFEQDGRVSFHHHEVVGAKM 327 Query: 284 ------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 E+ + + + P + +L L Sbjct: 328 TKKRMTALKYSNELVRDVSRLVELHLRFHGYGMGEWTDSAVRRYVRDAGPLLDRLHKLTR 387 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL +D LQ ++ + L G+ +++ G+ PG Sbjct: 388 SDCTTRNKRKANALSRAYDGLEDRIAQLQEQEELDAIRPD---LDGNQIMEILGVGPGPA 444 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +G + + + E + L Sbjct: 445 IGQAYKFLLELRLENGPMPQDEAVTALKE 473 >gi|57650412|ref|YP_186341.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus COL] gi|151221580|ref|YP_001332402.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus str. Newman] gi|161353526|ref|YP_499992.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509625|ref|YP_001575284.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|162138558|ref|YP_494045.2| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|262048981|ref|ZP_06021860.1| hypothetical protein SAD30_1259 [Staphylococcus aureus D30] gi|284024456|ref|ZP_06378854.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus 132] gi|294848421|ref|ZP_06789167.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9754] gi|73619848|sp|Q5HFW6|CCA_STAAC RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|172048887|sp|A6QH08|CCA_STAAE RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|189081881|sp|A8Z437|CCA_STAAT RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|57284598|gb|AAW36692.1| polyA polymerase [Staphylococcus aureus subsp. aureus COL] gi|150374380|dbj|BAF67640.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368434|gb|ABX29405.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162913|gb|EEW47476.1| hypothetical protein SAD30_1259 [Staphylococcus aureus D30] gi|269940950|emb|CBI49334.1| poly A polymerase family protein [Staphylococcus aureus subsp. aureus TW20] gi|294824447|gb|EFG40870.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus A9754] gi|302751288|gb|ADL65465.1| polynucleotide adenylyltransferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315197797|gb|EFU28131.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus CGS01] gi|329314134|gb|AEB88547.1| CCA-adding enzyme [Staphylococcus aureus subsp. aureus T0131] gi|329723189|gb|EGG59720.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus aureus subsp. aureus 21189] Length = 400 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 94/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 RIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVTE 240 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + +LI+ K I K L + + ++ Sbjct: 241 AID------------LELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSII 288 Query: 310 IPEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPL 362 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 289 TKEQLKMFVYDYDTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDM 348 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 349 MVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|257057896|ref|YP_003135728.1| tRNA adenylyltransferase [Saccharomonospora viridis DSM 43017] gi|256587768|gb|ACU98901.1| tRNA adenylyltransferase [Saccharomonospora viridis DSM 43017] Length = 523 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 96/451 (21%), Positives = 171/451 (37%), Gaps = 57/451 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + ++ + +VGG+VRD+L+ D+D T P+++ RI S V T Sbjct: 32 ADELAARFSRAGHRLYLVGGSVRDALLGKLSTDLDFTTDARPEQIQRIVSGWAEAVWDTG 91 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I +GT+ + +ITT R+D GR+ +V F ++D +RRDFT+NA+ D Sbjct: 92 IEFGTVGVAKHGTTCEITTFRADRYDRVGRHPEVEFGDSIESDLVRRDFTVNAMAVDLAT 151 Query: 134 K-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K +D GL L RT+ +D LR+LR RF + G + + A Sbjct: 152 KSFVDPHNGLEALARRTLDTPATPEESFADDPLRMLRAARFVSQLG-FEPEPRVVRAMTD 210 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ------------- 239 +K +++ER+ +E++KL+ P I M + G+ + +V Sbjct: 211 MADEIKRITAERVQAELSKLILGSAPRKGIELMVDTGLADHVLPEVPGMRLAIDEHHQHK 270 Query: 240 ---EISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSM------------- 281 + SL L Q I+ E E + D +LR L+ K + Sbjct: 271 DVYQHSLKVLEQAIDLETAHEPRLEPDLVLRLAALLHDIGKPATRRFEPGGGVSFHHHEV 330 Query: 282 ---------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKL 329 + P+++ + + E Y+ ++ KL Sbjct: 331 VGAKMARKRLRALRYPKDVVNDVSQLVFLHLRFHGYGRGEWTDSAVRRYVTDAGPLLPKL 390 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 + + + + D+ K L G+++++ G+ PG Sbjct: 391 HKLVRADCTTRNKRKAAALQRAYDDLEQRIERIAKEEDLAKVRPDLDGNEIMRILGVEPG 450 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 VG H K+ ++ E + LLR Sbjct: 451 PIVGKAWKHLKELRLDRGPLGRDEAVAELLR 481 >gi|16803944|ref|NP_465429.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes EGD-e] gi|224501296|ref|ZP_03669603.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL R2-561] gi|255029019|ref|ZP_05300970.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes LO28] gi|73619795|sp|Q8Y5Z8|CCA_LISMO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|16411358|emb|CAC99983.1| cca [Listeria monocytogenes EGD-e] Length = 393 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 170/399 (42%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +DS+ A Sbjct: 124 FALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQL-DFQLDSETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVI 250 L+ S ERI E K+++ A+ + + + ++ +L + Sbjct: 183 QIGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVE-METYLPGLKGEKKALTEFGSWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ + I ++ L+ ++ + K + LP + + + K + Sbjct: 242 WGKRTTDDAI-----WLGLVVTVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 AEE---LYHAGKAVFSLVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + + + + + L Sbjct: 350 LKWSGESAGPWVKETLDKLECGVLCNEINNEKNQIKRWL 388 >gi|308496537|ref|XP_003110456.1| hypothetical protein CRE_05412 [Caenorhabditis remanei] gi|308243797|gb|EFO87749.1| hypothetical protein CRE_05412 [Caenorhabditis remanei] Length = 479 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 119/428 (27%), Positives = 201/428 (46%), Gaps = 36/428 (8%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 + L+ + L K + I GGAVRD LMN+ D+D A+T P ++ +F + Sbjct: 44 DFRALFTPQLLKLRDLFAKRNYEIRIAGGAVRDLLMNIHPADVDFASTATPTQMKEMFEE 103 Query: 66 TRYKVIPT-SISYGTIKIICRK-KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 +++ +GTI + + F+ITTLR D++ DGR A+V +T DW+ D+ RRD T Sbjct: 104 ENIRMLHKRGEEHGTITCRIDEAENFEITTLRIDVVCDGRRAEVKYTTDWQQDANRRDLT 163 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL--------------R 169 IN+L+ D G V+DY GG+ D+ +R + F+GDA RI EDYLRIL R Sbjct: 164 INSLFLDLHGNVVDYFGGIADIESRRVAFVGDARQRIQEDYLRILRYESQQFLIGSNSFR 223 Query: 170 FFRFFAHY-GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 +FRFF ++D + A I K G+ +S+ERIW+E+ K++ + + M Sbjct: 224 YFRFFGRISNTPEHEADTIQAIIDNKDGMAGISAERIWTELKKIVVGRMADIVVKSMIEQ 283 Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ + +L++ +V F ++ + L ++++ I K L Sbjct: 284 CQLQKYLGLPENCNLNRFQKVFTR---FPKCVEPMTMIACLC--EEEEQIALFHKITKLS 338 Query: 289 REIR---YFLISFFNC---NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNNLT 341 + R F++ N N + I I +L G + + +L++ L L + L Sbjct: 339 NDERLLGEFILRERNAAIENLDNNDWWIDRIVELEVRPGHENQLDRLRLRLVQLARSVLA 398 Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLS 400 ++ + I + P FP+T D++ + G V N+L + W S F + Sbjct: 399 DEER------IQMIEKFVAPQFPITAQDLIDLQKVRRGPHVRNVLFYLLDLWKASRFTET 452 Query: 401 QEDLHHLL 408 +E L Sbjct: 453 RETLLEHA 460 >gi|74177543|dbj|BAB27827.3| unnamed protein product [Mus musculus] Length = 290 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 91/257 (35%), Positives = 144/257 (56%), Gaps = 4/257 (1%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + L ++ L K + I GGAVRD L + QD+D ATT P ++ +F Sbjct: 35 PEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQ 94 Query: 65 KTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 ++I +GTI ++ F++TTLR D+ TDGR+A+V FT DW+ D+ RRD T Sbjct: 95 SAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLT 154 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--N 181 IN+++ G + DY G DL+N+ ++F+G A RI EDYLRILR+FRF+ ++ + Sbjct: 155 INSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGD 214 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D + L A + KGL +S ERIW E+ K+L + + I +Y+ G+ I L Sbjct: 215 HDHETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLGVAPHIGLPANA- 273 Query: 242 SLDQLSQVIEAEQVFEW 258 +L++ ++V + + F Sbjct: 274 NLEEFNKVSKNVEGFSP 290 >gi|291484667|dbj|BAI85742.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. natto BEST195] Length = 397 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 168/400 (42%), Gaps = 20/400 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R +V F + D RRD TINA+ Sbjct: 64 KEHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTAD 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GKV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K Sbjct: 124 GKVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSPETEEAIAK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L +S ER E KLL+ + A+ + +++ ++ + + + + Sbjct: 183 EKSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYE----ELPGFYHKRENLISTS 238 Query: 253 EQVFEWKIDSLLRFIVLISWQDK--KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E F + L+ K K + LP ++ I + + Sbjct: 239 EFPFFSLTSREELWAALLINLGIVLKDAPLFLKGWKLPGKVIKEAIHIADTFGQSLDVMT 298 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G+K +++ KI L + I ++ +TG D+ Sbjct: 299 ------MYRAGEKALLSAAKISQLRQNEKLDEKKLKDIQYAYQNLPIKSLKDLDITGKDL 352 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + P GK V L +Q + ++ + L+ Sbjct: 353 LALRNRPAGKWVSEELQRIEQAVVTGKLSNQKKHIEEWLK 392 >gi|320140371|gb|EFW32227.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Staphylococcus aureus subsp. aureus MRSA131] Length = 411 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 93/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 18 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 73 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 74 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 133 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 134 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 192 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ER+ E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 193 RIQMADIKFLSIERMVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVTE 251 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + +LI+ K I K L + + ++ Sbjct: 252 AID------------LELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSII 299 Query: 310 IPEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPL 362 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 300 TKEQLKMFVYDYDTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDM 359 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 360 MVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 410 >gi|328473515|gb|EGF44358.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 220] Length = 387 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 172/392 (43%), Gaps = 23/392 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF + T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQTS----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQVI 250 + L+ S ERI E K+++ K AI + + +++ +L + + Sbjct: 183 QIELLQHTSVERITVEWLKMMKGKAAKRAIELLLKVK-METYLPGLKDEKSALSEFASWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ E I ++ L+ ++ + K + LP + + + N K + Sbjct: 242 WEKRTTEESI-----WLGLVVAVKPNNVNAFLKAWKLPNKTIQLVNKAYQYALNMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 TEE---LYHAGKAVFSLVNELNVIRGQENNQHK----VSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQ 401 +K+ G G V L + +++ + Sbjct: 350 LKWSGESAGPWVKETLDKVECGVLSNEINNEK 381 >gi|296271520|ref|YP_003654152.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermobispora bispora DSM 43833] gi|296094307|gb|ADG90259.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermobispora bispora DSM 43833] Length = 483 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 89/450 (19%), Positives = 165/450 (36%), Gaps = 57/450 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + L + +VGG VRD + +D+D+ T+ P++V+ I V Sbjct: 25 ADELGELFAARGHELALVGGCVRDVFLGRLGKDLDLTTSARPEQVLEIVKDWADAVWTIG 84 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I +GT+ + + +ITT RS+ R +V F + D RRDFT+NA+ G Sbjct: 85 IEFGTVGVRKGDRLLEITTYRSESYDPSSRKPEVSFGDSLEGDLSRRDFTVNAMAVRLPG 144 Query: 134 KV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 V +D GGL DL + ++ G +D LR+LR RF A G + + + A Sbjct: 145 YVFVDPFGGLGDLAAKVLRTPGSPEQSFDDDPLRMLRAARFAAQLG-FTVAPEVVEAMTA 203 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + I+S+ERI E++KL+ A +P + + + G+ + ++ + L ++ + Sbjct: 204 MAGRIDIVSAERIRDELDKLICAPHPRAGLTLLVDTGLAARVLPELPNLRL-EIDEHHRH 262 Query: 253 EQVFEWK--------------IDSLLRFIVLISWQDKKSILSM----------------- 281 + V+E D +LR+ L+ K + Sbjct: 263 KDVYEHTLIVLEQAIAQETGGPDRVLRWAALLHDIGKPKTRRLEPDGRVTFHHHEVVGAQ 322 Query: 282 -----AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKL---- 329 + P+++ + + E Y+ ++ +L Sbjct: 323 MARKRLTELKFPKDVVADVSRLVELHLRFHGYGSGEWTDSAVRRYVRDAGHLLERLHKLT 382 Query: 330 ------KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 + + + L+ K L G ++ + GIPPG VG Sbjct: 383 RADCTTRNKRKAAALARAYDQLEERIARLAKEEELAKIRPELNGHEIQEILGIPPGPLVG 442 Query: 383 NILVHCKQEWINSSF---QLSQEDLHHLLR 409 ++ + ++E L R Sbjct: 443 KAYKFLLDLRMDRGLIGKEAAKEALLEWAR 472 >gi|47096488|ref|ZP_00234080.1| polyA polymerase [Listeria monocytogenes str. 1/2a F6854] gi|224500255|ref|ZP_03668604.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes Finland 1988] gi|254899398|ref|ZP_05259322.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes J0161] gi|254912463|ref|ZP_05262475.1| polyA polymerase [Listeria monocytogenes J2818] gi|254936790|ref|ZP_05268487.1| polyA polymerase [Listeria monocytogenes F6900] gi|284802350|ref|YP_003414215.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5578] gi|284995492|ref|YP_003417260.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5923] gi|47015141|gb|EAL06082.1| polyA polymerase [Listeria monocytogenes str. 1/2a F6854] gi|258609385|gb|EEW21993.1| polyA polymerase [Listeria monocytogenes F6900] gi|284057912|gb|ADB68853.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5578] gi|284060959|gb|ADB71898.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes 08-5923] gi|293590445|gb|EFF98779.1| polyA polymerase [Listeria monocytogenes J2818] Length = 393 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 171/399 (42%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +DS+ A Sbjct: 124 FALHDPFSGQEAVKNKAIKAVGKASERFHEDALRMMRGVRFLSQL-DFQLDSETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVI 250 L+ S ERI E K+++ A+ + + + ++ +L + Sbjct: 183 QIGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVE-METYLPGLKGEKKALTEFGSWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ + I ++ L+ ++ + K + LP + + + K + Sbjct: 242 WGKRTTDDAI-----WLGLVVTVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 AEE---LYHAGKAVFSLVNELNIIRGKENNQHK----LSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 350 LKWSGESAGPWVKETLDKLECGVLSNEINNEKNQIKRWL 388 >gi|321311714|ref|YP_004204001.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis BSn5] gi|320017988|gb|ADV92974.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis BSn5] Length = 397 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 167/400 (41%), Gaps = 20/400 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRAIGDVDIATDAAPDQVERLFQRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R +V F + D RRD TINA+ Sbjct: 64 KEHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTAD 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GKV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K Sbjct: 124 GKVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSPETEEAIAK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L +S ER E KLL+ + A+ + ++K ++ + + + + Sbjct: 183 EKSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYK----ELPGFYHKRENLISTS 238 Query: 253 EQVFEWKIDSLLRFIVLISWQDK--KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E F + L+ K K + LP ++ I + Sbjct: 239 EFPFFSLTSREELWAALLINLGIALKDAPLFLKAWKLPGKVIKEAIHIADTFGQSLDAMT 298 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G+K +++ KI L + I ++ +TG D+ Sbjct: 299 ------MYRAGEKALLSAAKISQLRQNEKLDEKKLKDIQYTYQNLPIKSLKDLDITGKDL 352 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + P GK V L +Q + ++ + L+ Sbjct: 353 LALRNRPAGKWVSEELQRIEQAVVTGKLSNQKKYIEEWLK 392 >gi|166154046|ref|YP_001654164.1| polyA polymerase [Chlamydia trachomatis 434/Bu] gi|301335247|ref|ZP_07223491.1| polyA polymerase [Chlamydia trachomatis L2tet1] gi|165930034|emb|CAP03517.1| polyA polymerase [Chlamydia trachomatis 434/Bu] Length = 410 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 171/403 (42%), Gaps = 15/403 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ VGG+VRD L+ ++++DIAT P V IF T + Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G DL + I+ IG R LED LRILR RF A G +D A IK Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIK 183 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L ++ ERIW E+ K+L P ++ + + +F +++ S L I Sbjct: 184 ELPSLPNSVAPERIWQELKKMLRTA-PYESLQLLTKLKVLPILFPELKVSSSGFLRSAIA 242 Query: 252 -AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ + +I + + L DK+ L + + + L ++ + Sbjct: 243 FAQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----LT 366 + + + + + I + + + + + + ++ Sbjct: 303 DKFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVS 362 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D++ GI PG+ +G +L + I +E + LL+ Sbjct: 363 AQDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404 >gi|149198773|ref|ZP_01875816.1| putative poly(A) polymerase [Lentisphaera araneosa HTCC2155] gi|149138209|gb|EDM26619.1| putative poly(A) polymerase [Lentisphaera araneosa HTCC2155] Length = 385 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 111/385 (28%), Positives = 175/385 (45%), Gaps = 16/385 (4%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 IVGGAVRD L+ + V DIDIA+ I P + YK T I +GT+ ++ Sbjct: 10 GKDIYIVGGAVRDRLLGIDVVDIDIASAIHPYDFKDLSKSLGYKTFDTGIEHGTVTVLID 69 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 K ++ TT R+D+ DGR A V F++ + D RRDFTINA+ K+ID G NDL Sbjct: 70 GKPYEHTTFRTDVSCDGRNANVSFSKTIEEDLSRRDFTINAIAL-LGKKIIDPFNGQNDL 128 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSER 204 +N+ +K +G A R EDYLRI+R RF + + +ID+D L+A+ + + + +S ER Sbjct: 129 KNKILKTVGTAEERFSEDYLRIIRAARFASRL-KMSIDTDLLIAAKELAPKITQHVSVER 187 Query: 205 IWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLL 264 I E K + + +Y+ I +F ++ ++L E + ++ D Sbjct: 188 ISDEFKKA--QGHAEEFLKVLYSMNILDVLFDSTKDHYANELW-WEEVGRAAQY--DGET 242 Query: 265 RFIVLISWQ-DKKSILSMAKKFSLPREIRYFLISFFN--CNFNQKTLSIPEIKKLFYLYG 321 F L+ DK + S+ +++ L R I F FN S+ + ++ G Sbjct: 243 YFAALVRPSGDKNKVESICREYKLSRSIIRFSCQLVEHLAYFNTGEFSLEKSYQILKSCG 302 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 D L + L L DI K + G D+ I PG + Sbjct: 303 DNSSR-LLNYLHNVIEQTEPRPALEQTLNQLDDIDQAIKNPL-INGGDLHTMNIKPGPEF 360 Query: 382 GNILVHCKQEWINSSFQLSQEDLHH 406 +IL I L++E++ + Sbjct: 361 RHILDRAALLQIEG---LNKEEILN 382 >gi|262051628|ref|ZP_06023848.1| hypothetical protein SA930_1905 [Staphylococcus aureus 930918-3] gi|259160469|gb|EEW45493.1| hypothetical protein SA930_1905 [Staphylococcus aureus 930918-3] Length = 400 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 94/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNAENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 RIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVTE 240 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + +LI+ K I K L + + ++ Sbjct: 241 AID------------LELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSII 288 Query: 310 IPEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPL 362 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 289 TKEQLKMFVYDYDTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDM 348 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 349 MVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|119385302|ref|YP_916358.1| polynucleotide adenylyltransferase region [Paracoccus denitrificans PD1222] gi|119375069|gb|ABL70662.1| Polynucleotide adenylyltransferase region [Paracoccus denitrificans PD1222] Length = 388 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 120/408 (29%), Positives = 192/408 (47%), Gaps = 28/408 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 ++ + + D L +L+ L G ++ IVGGAVR++L+ V D+DI+T+ P+ +R Sbjct: 1 MTRLTAPFLDDPALKQVLAALAAGGAQALIVGGAVRNALLGEPVADVDISTSARPEDTVR 60 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + + +PT I +GT+ +I + F++T+ R D+ T GR A V ++ + D+ RRD Sbjct: 61 LAEAAGLRSVPTGIEHGTVTVIADGRGFEVTSFRRDVETFGRRAVVAYSDRIEDDAHRRD 120 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NALYA G+V+D VGGL DL R ++F+G+ H RI EDYLRILRFFR A YG + Sbjct: 121 FTMNALYATASGEVLDPVGGLPDLAARRLRFVGNPHARIAEDYLRILRFFRLLAWYG-RE 179 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + L A + ++GL +S ERI EI KLL+A +P A+ M G+ + Sbjct: 180 AELQALAACRELREGLTGISRERIGHEIRKLLDAPDPSRAVALMAEAGVLPLVLPGADAG 239 Query: 242 SLDQLSQVIEAEQVFEW-KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 L L +E E+ + + R + L++ QD + L R+ Sbjct: 240 DLPDL---VEVEREYGTGALPCWPRRLALLAPQDAEGA------LRLSRDEA-------R 283 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + Y +G + I A + D+ Sbjct: 284 AQDHIAAALALPAPAAAYRFGRASAAQAVLIRAA--------RGERPAFGWCHDLARGAA 335 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 FPLT D++ G +G L + ++ S F L ++ L + Sbjct: 336 AQFPLTARDLMPE--LSGPALGEALRRAEAAFVESDFTLPRDALLRIA 381 >gi|16079302|ref|NP_390126.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. 168] gi|221310161|ref|ZP_03592008.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. 168] gi|221314483|ref|ZP_03596288.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319405|ref|ZP_03600699.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323681|ref|ZP_03604975.1| tRNA CCA-pyrophosphorylase [Bacillus subtilis subsp. subtilis str. SMY] gi|1709578|sp|P42977|CCA_BACSU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|1146238|gb|AAB38446.1| poly(A) polymerase [Bacillus subtilis subsp. subtilis str. 168] gi|2634663|emb|CAB14161.1| tRNA nucleotidyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 397 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 166/400 (41%), Gaps = 20/400 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R +V F + D RRD TINA+ Sbjct: 64 KEHGTIIVLWEDETYEVTTFRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTAD 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GKV+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K Sbjct: 124 GKVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSPETEEAIAK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L +S ER E KLL+ + A+ + +++ ++ + + + + Sbjct: 183 EKSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYE----ELPGFYHKRENLISTS 238 Query: 253 EQVFEWKIDSLLRFIVLISWQDK--KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E F + L+ K K + LP ++ I + Sbjct: 239 EFPFFSLTSREELWAALLINLGIVLKDAPLFLKAWKLPGKVIKEAIHIADTFGQSLDAMT 298 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 Y G K +++ KI L + I ++ +TG D+ Sbjct: 299 ------MYRAGKKALLSAAKISQLRQNEKLDEKKLKDIQYAYQNLPIKSLKDLDITGKDL 352 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + P GK V L +Q + ++ + L+ Sbjct: 353 LALRNRPAGKWVSEELQWIEQAVVTGKLSNQKKHIEEWLK 392 >gi|323439540|gb|EGA97261.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus O11] gi|323442221|gb|EGA99852.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus O46] Length = 400 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 26/410 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDDGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 RTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYM-PYFEHLDMNQINVT- 239 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L I ++S + I K L + + ++ Sbjct: 240 --------EPIDLELLIAIVSVKF--DINYSLKPLKLSNRQVKDINQYIQIMNVLPSIIT 289 Query: 311 PEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPLF 363 E K+F Y Y ++ + L N++ + + + +H +K + Sbjct: 290 KEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHHLTMHDRKDMM 349 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 350 VNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|239942688|ref|ZP_04694625.1| putative RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 15998] gi|239989147|ref|ZP_04709811.1| putative RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 11379] gi|291446152|ref|ZP_06585542.1| RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 15998] gi|291349099|gb|EFE76003.1| RNA nucleotidyltransferase [Streptomyces roseosporus NRRL 15998] Length = 480 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 85/453 (18%), Positives = 172/453 (37%), Gaps = 59/453 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 30 ADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 90 IAFGTVGSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVALPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GGL DL +R ++ G +D LR+LR RF A + + + + A + Sbjct: 150 KEFVDPYGGLKDLADRVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPEVITAMTE 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 + I+S+ER+ E+NKLL +++P + + + G+ + ++ + L+ Sbjct: 209 MAARIDIVSAERVRDELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHHRHK 268 Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 L+ + +A + E D +LR L+ K K Sbjct: 269 DVYEHSLTVLEQAIDLEEGGPDLVLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVGAKM 328 Query: 284 ------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 E+ + + P +++L L Sbjct: 329 TKKRMTALKYSNELVKDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHKLTR 388 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL ++ +LQ ++ + L G+++++ G+ PG Sbjct: 389 SDCTTRNKRKANALSRTYDALEERIALLQEQEELDSIRPD---LDGNEIMQILGVGPGPV 445 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 +G ++ + + ++ L++ A Sbjct: 446 IGKAYGFLLEQRLEHG-PMERDAAVAALKEWWA 477 >gi|237745324|ref|ZP_04575805.1| poly(a) polymerase [Fusobacterium sp. 7_1] gi|229432553|gb|EEO42765.1| poly(a) polymerase [Fusobacterium sp. 7_1] Length = 442 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 103/435 (23%), Positives = 184/435 (42%), Gaps = 50/435 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D T + + + +IFS+ Y T Sbjct: 14 IKILNKLNKCG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKIFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 S+G ++I ++I R D+ G+ KV F D + D RRDFTINA+ ++ + Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDIY--GKEKKVSFVDDIRNDLARRDFTINAMAYNEIDGI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG D+ N+ I F+G+ RI+ED LR+LR FRF + ++ + + A K Sbjct: 129 IDLYGGQKDIENKIINFVGNVEERIIEDPLRVLRAFRFMSRLN-FSLSENTIEAIKNQKS 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LK + ERI E +KLL N N + M + G+ + I + + + Sbjct: 188 LLKNIPEERINMEFSKLLLGDNIKNTLTLMKDTGVLELIIPEFKATYDFNQCNPHHNLDL 247 Query: 256 FEW--------KIDSLLRFIVLISWQDKKSI----------------------LSMAKKF 285 F D LR+ L+ K + + + Sbjct: 248 FNHIINVVSKVPADLELRYSALLHDMAKPIVQIFDEEGIAHYKTHEIVGADMARDILTRL 307 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 LP ++ ++ + K ++ + KL G L++ +N + + Sbjct: 308 KLPVKLIDTVVEIIKKHMVLYKDITDKKFNKLLSEMG---YDNLLRLIEHSIADNSSKNN 364 Query: 345 T---------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + + + + + G D+++ G GK++G I ++++ Sbjct: 365 EVVSTENDLHERLKRAVEKQMQVTVNDLAINGKDLIELGFN-GKEIGEIKKELLDKYLSE 423 Query: 396 SFQLSQEDLHHLLRK 410 Q ++E++ +++ Sbjct: 424 EIQNNKEEMMEYVKE 438 >gi|170742595|ref|YP_001771250.1| polynucleotide adenylyltransferase region [Methylobacterium sp. 4-46] gi|168196869|gb|ACA18816.1| Polynucleotide adenylyltransferase region [Methylobacterium sp. 4-46] Length = 418 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 191/367 (52%), Gaps = 13/367 (3%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L L +++ +VGGAVRD+L+ +V D+D+ATT+LP+ VMR + + K +PT IS Sbjct: 20 KVLDALALPGEETRLVGGAVRDALLGRAVADVDLATTLLPETVMRRAAASGLKPVPTGIS 79 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 +GT+ ++ + F++TTLR D+ TDGR+A V + RD+ D+ RRDFTINAL+AD G + Sbjct: 80 HGTVTVVAHGEPFEVTTLREDVETDGRHAVVRYGRDFGRDAARRDFTINALFADAGGHLH 139 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D VGGL DL ++FIGD RI EDYLRILRFFRF A YG +D GL A+I A+ G Sbjct: 140 DPVGGLPDLAAGRVRFIGDPAQRIREDYLRILRFFRFHARYGRGPLDPAGLAAAIAARDG 199 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L LS ER+ E+ KL+ A + M G+ + + + ++ +L+++ + Sbjct: 200 LATLSRERVRVEMLKLVAAPGAPEVVAVMSATGLLQRLLGGIGDLG--RLARLRSRDD-- 255 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ----KTLSIPE 312 D + R L + Q + + + L + L + + Sbjct: 256 --PPDPVRRLAAL-AVQSEADADRLREGLRLSKAEHARLAGAAAALAALHGATEAIDAAA 312 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 +++ +G +I I L + + + + I PLFP+TG +V Sbjct: 313 LRRQVARHGLPAIIDATMILAGEPRPILDEEARELLASLAAGRIA--VPLFPVTGAQLVA 370 Query: 373 YGIPPGK 379 G PG Sbjct: 371 GGATPGP 377 >gi|160915815|ref|ZP_02078023.1| hypothetical protein EUBDOL_01831 [Eubacterium dolichum DSM 3991] gi|158432291|gb|EDP10580.1| hypothetical protein EUBDOL_01831 [Eubacterium dolichum DSM 3991] Length = 447 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 93/444 (20%), Positives = 177/444 (39%), Gaps = 48/444 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++I ++ ++ +VGG VRD++ + D D+ T LP + +F + ++PT Sbjct: 7 ILDIFAIYEANGYEAFVVGGCVRDAICKRNCHDYDVITNALPQETIALFQQIGLHILPTG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 ++GT+ +I ++ + +ITT R + I R A + FT+ D RRDFTINA+ Sbjct: 67 FAHGTLTLIYQEHFIEITTYRKEDDYIDHRRPANISFTKSIYEDLKRRDFTINAIAYHPV 126 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID G+ D+ RTI+ +GD + R+ ED LRILR RF A I+ A + Sbjct: 127 HGLIDPFCGIKDIHRRTIRCVGDPNKRMEEDALRILRALRFSAQL-SFTIEEKTWQAILT 185 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + +S ERI +E N+ L + P NA+ + + + I ++Q I A Sbjct: 186 HAMDIDYVSKERIQAEFNQYLCSDKP-NALHFLRAANVLELILPEMQRIYDAPQPTPWHA 244 Query: 253 EQVFEWKIDSLLR---------FIVLISWQD----------------------KKSILSM 281 +F +L ++ K+ Sbjct: 245 YDIFTHTDIALNHSKGYNLEKKLAIVFHDLGKPLCESFDEKGIVHYHGHAEISKEIAKQR 304 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 K+ ++ + + +++ + + +A + + L N+ Sbjct: 305 LKQLHYSNTAIKYITTLIAFHDYYVCPKRKVLRRFLSKLDNDIELALDILDIQLADNHAK 364 Query: 342 H------------QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 H +LQ+ + ++ + G D++ G G + L Sbjct: 365 HPKLQKELIENILASKALLLQMQKEQDMIQRKDLAVNGHDIIALGYQ-GADIKKALEMLY 423 Query: 390 QEWINSSFQLSQEDLHHLLRKLIA 413 Q I+ Q ++++L LL+ + Sbjct: 424 QTVIDDPSQNTKDNLLSLLKTFKS 447 >gi|21283076|ref|NP_646164.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus MW2] gi|49486297|ref|YP_043518.1| tRNA CCA-pyrophosphorylase [Staphylococcus aureus subsp. aureus MSSA476] gi|73619859|sp|Q6G9A5|CCA_STAAS RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|73619861|sp|Q8NWP0|CCA_STAAW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|21204516|dbj|BAB95212.1| MW1347 [Staphylococcus aureus subsp. aureus MW2] gi|49244740|emb|CAG43176.1| poly A polymerase family protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 400 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 93/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL + ++ VGG+VRD +M ++ DIDI T+ PD + IFS T IP Sbjct: 7 EQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT----IP 62 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ + +++TT R++ D R V F RD D RRDFT+NA+ D Sbjct: 63 VGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMD 122 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K+ DY G D+ NR I+ +G A R ED LR++R RF + +I ++ A Sbjct: 123 TAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQL-SFDIATETFEAM 181 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +K LS ERI E+ KL+ N + H+ + F + + + ++Q++ Sbjct: 182 RIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYM-PYFEHLDMNQINVTE 240 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKK-SILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + +LI+ K I K L + + ++ Sbjct: 241 AID------------LELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSII 288 Query: 310 IPEIKKLF-YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------LQVLSDIIHWKKPL 362 E K+F Y Y ++ + + N++ + + + +H +K + Sbjct: 289 TKEQLKMFVYDYDTHLIKNVMVAADVIKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDM 348 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G + G + ++L + + + ++ + + Sbjct: 349 MVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVK 399 >gi|255349096|ref|ZP_05381103.1| polyA polymerase [Chlamydia trachomatis 70] gi|255503633|ref|ZP_05382023.1| polyA polymerase [Chlamydia trachomatis 70s] gi|255507312|ref|ZP_05382951.1| polyA polymerase [Chlamydia trachomatis D(s)2923] gi|289525748|emb|CBJ15229.1| polyA polymerase [Chlamydia trachomatis Sweden2] gi|296435320|gb|ADH17498.1| polyA polymerase [Chlamydia trachomatis E/150] gi|296439037|gb|ADH21190.1| polyA polymerase [Chlamydia trachomatis E/11023] Length = 410 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 15/403 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ VGG+VRD L+ ++++DIAT P V IF T + Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G DL + I+ IG R LED LRILR RF A G +D A IK Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPKQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIK 183 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L P ++ + +F +++ S L I Sbjct: 184 ELPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKGLPILFPELKVSSSGFLRSAIA 242 Query: 252 -AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ + +I + + L DK+ L + + + L ++ + Sbjct: 243 FAQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----LT 366 + + + + + I + + + + + + ++ Sbjct: 303 DKFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVS 362 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D++ GI PG+ +G +L + I +E + LL+ Sbjct: 363 AQDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404 >gi|46908138|ref|YP_014527.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes serotype 4b str. F2365] gi|254992071|ref|ZP_05274261.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J2-064] gi|73619794|sp|Q71YB0|CCA_LISMF RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|46881408|gb|AAT04704.1| polyA polymerase [Listeria monocytogenes serotype 4b str. F2365] Length = 393 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 173/399 (43%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF + T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQTS----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQVI 250 + L+ S ERI E K+++ K AI + + +++ +L + + Sbjct: 183 QIELLQHTSVERITVEWLKMMKGKAAKRAIELLLKVK-METYLPGLKDEKSALSEFASWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ E I ++ L+ ++ + K + LP + + + K Sbjct: 242 WEKRTTEESI-----WLGLVVAVKPNNVNAFLKAWKLPNKTIQLVNKAYQDALKMKETW- 295 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 +K Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 296 --LKDELYHAGKAVFSLVNELNVIRGKENNQHK----VSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 350 LKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388 >gi|315282932|ref|ZP_07871227.1| CCA-adding enzyme [Listeria marthii FSL S4-120] gi|313613420|gb|EFR87269.1| CCA-adding enzyme [Listeria marthii FSL S4-120] Length = 393 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 175/399 (43%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF T T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQST----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + K+ +++TT R++ D R +V F R K D LRRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLKEDLLRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++++ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FDLHDPFAGQLAIQHKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETENALGS 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQVI 250 L+ S ERI E K+++ A+ + + +Q + +L + + Sbjct: 183 QIALLEHTSVERITVEWIKMIKGPAVKRAMDLLLKVE-METYLPGLQGEKAALTEFASWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ E I ++ L+ ++ + K + LP + + + F++K + Sbjct: 242 WAKRISEEVI-----WLGLVVAVKPSNVTAFLKAWKLPNKTIQLVNKAYQDAFDRKEIWQ 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G V + L+ + Q S + K +TG D+ Sbjct: 297 TEE---LYHAGQPVF----SLVNELNVLRGQEDKQQVLNQAYSALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + ++S + + L Sbjct: 350 LKWSGENAGPWVKETLDKLECAILSSEINNEKNQIKRWL 388 >gi|307718754|ref|YP_003874286.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192] gi|306532479|gb|ADN02013.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192] Length = 421 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 98/420 (23%), Positives = 166/420 (39%), Gaps = 51/420 (12%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LI 99 + D D+AT P VM++F +VIPT I +GT+ I+ R ++ITT R + Sbjct: 3 LGTPPDDYDLATDAPPREVMKLFR----RVIPTGIQHGTVTIVFRDHCYEITTFRVETSY 58 Query: 100 TDGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAH 157 +DGR+ +V FT + D RRDFTINA+ D G+ D G +D++ R IK IG+ Sbjct: 59 SDGRHPDEVRFTTSLEEDLSRRDFTINAMALDPLTGEFFDPFDGYSDIKRRLIKAIGNPE 118 Query: 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 R ED LRILR RF +I+ + A + + L+ +S ERI E++K++EA Sbjct: 119 ERFEEDALRILRAIRFATQL-SFSIEQETYAAIGRHAEYLRRISWERIRDELSKIMEAVR 177 Query: 218 PLNAIVHMYNGGIFKEIFLDVQE---------ISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 P + M GI + ++++ D L ++ D LR+ Sbjct: 178 PSQGFLRMEETGILSIVVPELKKCRGVPQSPPHRFDVLDHLLHTCDALPPS-DPPLRWAG 236 Query: 269 LISWQDKKSILS----------------------MAKKFSLPREIRYFLISFFNCNFNQ- 305 L+ K LS + K+ P + + + Sbjct: 237 LLHDIGKPETLSEDDLGGIHFHRHEHVSSHLAQHILKRLKFPNAVIQDVSHLIRHHMFDY 296 Query: 306 -KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT--------CFILQVLSDII 356 + +++ + G + + +K+ +A ++L++ Sbjct: 297 TPDWTDAAVRRFLHRTGPEYLERLIKLRIADRIGMTGETAPSHDLAGLKARAERLLAENT 356 Query: 357 HWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + G + + GIPPG +G L + Q ++ L L R Sbjct: 357 PLSIKDLAVDGHILKEDAGIPPGPWMGKTLRFLLDAVLEDPSQNTRARLTELARNFYTQR 416 >gi|21222303|ref|NP_628082.1| RNA nucleotidyltransferase [Streptomyces coelicolor A3(2)] gi|256786596|ref|ZP_05525027.1| RNA nucleotidyltransferase [Streptomyces lividans TK24] gi|289770488|ref|ZP_06529866.1| tRNA adenylyltransferase [Streptomyces lividans TK24] gi|4808392|emb|CAB42723.1| putative RNA nucleotidyltransferase [Streptomyces coelicolor A3(2)] gi|289700687|gb|EFD68116.1| tRNA adenylyltransferase [Streptomyces lividans TK24] Length = 483 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 85/464 (18%), Positives = 164/464 (35%), Gaps = 59/464 (12%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + ++ + +VGG+VRD+L+ D+D T P V++I Sbjct: 20 AREPLRVAPVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIMR 79 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFT 123 V I++GT+ ++TT RS+ R +V + + D +RRDFT Sbjct: 80 PWADAVWEVGIAFGTVGGQKDGWQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFT 139 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NA+ + ID GGL+DL R ++ G +D LR++R RF A + + Sbjct: 140 VNAMAVALPEKVFIDPHGGLDDLAARVLRTPGTPEDSFSDDPLRMMRAARFAAQL-DFEV 198 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + + A + I+S+ER+ E+NKL+ + +P + + G+ + + ++ + Sbjct: 199 APEVVKAMHDMAGRIDIVSAERVRDELNKLILSPHPRKGLSLLVETGLAERVLPELPALR 258 Query: 243 LDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------ 283 L++ L + +A + D LR L+ K K Sbjct: 259 LERDEHHRHKDVYDHTLIVLEQAMALESEGPDLTLRLAALLHDIGKPRTRRFEKDGRVSF 318 Query: 284 ----------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------P 311 ++ + + P Sbjct: 319 HHHEVVGAKMTKKRMIALKYSNDLVRDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGP 378 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + +L L + AL +D LQ ++ + L G+ ++ Sbjct: 379 LLDRLHKLTRSDCTTRNKRKASALSRAYDGLEDRIAQLQEQEELDAIRPD---LDGNQIM 435 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + G+ PG VG H + + + + + L++ A Sbjct: 436 EVLGVRPGPAVGQAYKHLLELRLENG-PMEHDAAVAALKEWWAQ 478 >gi|296436248|gb|ADH18422.1| polyA polymerase [Chlamydia trachomatis G/9768] gi|296437177|gb|ADH19347.1| polyA polymerase [Chlamydia trachomatis G/11222] gi|296438108|gb|ADH20269.1| polyA polymerase [Chlamydia trachomatis G/11074] gi|297140609|gb|ADH97367.1| polyA polymerase [Chlamydia trachomatis G/9301] Length = 410 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 15/403 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L ++ VGG+VRD L+ ++++DIAT P V IF T + Sbjct: 9 AKKIVRKLRNAGYQAYFVGGSVRDMLLGRPIEEVDIATNASPTIVTTIFPDT----LSIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++G I + + F++ T RSD DGR+ V K D++RRDFTIN +Y D + Sbjct: 65 AAFGIIAVKENGQLFEVATFRSDEDYEDGRHPNRVVFASMKDDAIRRDFTINGMYYDPFE 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D V G DL + I+ IG R LED LRILR RF A G +D A IK Sbjct: 125 EKLFDLVEGRADLERKIIRAIGHPRQRFLEDKLRILRAIRFAATLG-FALDPQTEQAIIK 183 Query: 193 AKKGLKI-LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 L +S ERIW E+ K+L P ++ + +F +++ S L I Sbjct: 184 ELPSLPNSVSPERIWQELKKMLRTA-PYESLQLLTKLKGLPILFPELKVSSSGFLRSAIA 242 Query: 252 -AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 A+++ + +I + + L DK+ L + + + L ++ + Sbjct: 243 FAQKIHDSQIPEIALLLPLFREVDKEKALEAFSRLRVSNKELKLLEDWYAALPQFLSKQN 302 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----LT 366 + + + + + I + + + + + + ++ Sbjct: 303 DKFFWAHFFASETSSLLLSLFLSMQRSPDEQELFIARIHDLKTRLAAFIERIQSGAPLVS 362 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 D++ GI PG+ +G +L + I +E + LL+ Sbjct: 363 AQDLIAKGITPGRLLGELLREAEALSIEHECS-DKEKILSLLK 404 >gi|302552677|ref|ZP_07305019.1| tRNA adenylyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302470295|gb|EFL33388.1| tRNA adenylyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 481 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 165/456 (36%), Gaps = 59/456 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P V++I V Sbjct: 30 ADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVWEVG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 90 IAFGTVGAHKGGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + ID GGL DL +R ++ G +D LR++R RF A + + + + A Sbjct: 150 KEFIDPHGGLEDLASRVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAPEVVAAMEG 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E+NKL+ + +P + + G+ + ++ + L++ Sbjct: 209 MAGRIEIVSAERVRDELNKLILSPHPRKGLTLLVETGLADRVLPELPALRLERDEHHRHK 268 Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 L + +A + D LR L+ K K Sbjct: 269 DVYDHTLIVLEQAMALEGDGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVGAKM 328 Query: 284 ------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 E+ + + P + +L L Sbjct: 329 TKKRMAALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHKLTR 388 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL ++ LQ ++ + L G+ +++ G+ PG Sbjct: 389 SDCTTRNKRKAAALSRAYDGLEERIASLQEEEELDSIRPD---LDGNQIMEILGVGPGPV 445 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +G H + + + + + L++ A + Sbjct: 446 IGRAYKHMLELRLENG-PMEPDAAVTALKEWWAEQE 480 >gi|257869568|ref|ZP_05649221.1| poly A polymerase [Enterococcus gallinarum EG2] gi|257803732|gb|EEV32554.1| poly A polymerase [Enterococcus gallinarum EG2] Length = 404 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 89/403 (22%), Positives = 162/403 (40%), Gaps = 16/403 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I +L + + VGG+VRD+++ + D+DIAT+ P + +F +T I Sbjct: 11 EQAIPVLQRIEAAGFDAYFVGGSVRDTILGQPIHDVDIATSAFPAEIKELFPRT----ID 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + ++ITT R++ D R KV F R D RRDFTINA Sbjct: 67 LGIEHGTVLVLWENEQYEITTFRTEEAYQDFRRPDKVAFVRSLAEDLKRRDFTINAFALK 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G++ID GL DL+ + ++ +G H R ED LR++R RF + G ++ A Sbjct: 127 KDGEIIDLFDGLADLQLKILRAVGQPHERFHEDALRMMRGLRFVSQLG-FTLEPRTFEAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L +S ERI E KLL + +A+ + +++ L Sbjct: 186 YDNHQLLAKISVERITIEFVKLLLGAHRNSALKAFVATECYLYC-PGLKQAGEALLRMAD 244 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E+ + + ++ + K++ E+ + S F +K Sbjct: 245 LPERPLNNEASAWT-LLIDQIGLSTAEVRPFLKQWKCSNELIRMVQSLFEGVLLRKA--G 301 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 P + Y G + A+L L +Y D + + G D+ Sbjct: 302 PFSDEALYHLGSEA--ARLSEELLYYYG--QEVDPSVSQARYQALPIHSLKDLAINGRDL 357 Query: 371 VKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + + G + +L ++ I ++ L + ++ Sbjct: 358 LSHFDQSGGPWMKEVLAAAEKAVIEKRVANEEKALLAFAKTIV 400 >gi|307330000|ref|ZP_07609152.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces violaceusniger Tu 4113] gi|306884376|gb|EFN15410.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces violaceusniger Tu 4113] Length = 496 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 92/460 (20%), Positives = 168/460 (36%), Gaps = 68/460 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + + +VGG+VRD+L+ D+D T PD V++I V Sbjct: 35 ADDLARHFQQAGFRLALVGGSVRDALLGRLGNDLDFTTDARPDEVLKIVRPWADAVWDVG 94 Query: 75 ISYGTIKIICR---------KKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTI 124 I++GT+ +ITT RS+ R +V + + D +RRDFT+ Sbjct: 95 IAFGTVGCRKDMAAGSGSDQSFQIEITTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTV 154 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ Q + ID GL DL R ++ G +D LR++R RF A + + Sbjct: 155 NAMAVALPQKEFIDPHHGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVA 213 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + + A + I+S+ER+ E+NKL+ A +P + + G+ + ++ + L Sbjct: 214 PEVVAAMTSMADRIDIVSAERVRDELNKLILADHPREGLRLLVETGLADRVLPELPALRL 273 Query: 244 DQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------- 283 ++ L+ + +A + D +LR L+ K K Sbjct: 274 ERDEHHRHKDVYEHSLTVLDQAIDLEAEGPDLVLRLAALLHDIGKPKTRRFEKDGRVSFH 333 Query: 284 ---------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PE 312 K E+ + + P Sbjct: 334 HHEVVGAKMTKYRMTKLKYSNELIKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPL 393 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + +L L + AL ++ LQ ++ + L G++++K Sbjct: 394 LDRLHKLTRSDCTTRNKRKATALSRAYDGLEERIAQLQEQEELDSIRPD---LDGNEIMK 450 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 GIPPG +VG H + + + +E L++ Sbjct: 451 ILGIPPGPQVGKAYKHLLEMRLEHG-PMERETAIATLQEW 489 >gi|170747035|ref|YP_001753295.1| polynucleotide adenylyltransferase region [Methylobacterium radiotolerans JCM 2831] gi|170653557|gb|ACB22612.1| Polynucleotide adenylyltransferase region [Methylobacterium radiotolerans JCM 2831] Length = 412 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 114/396 (28%), Positives = 176/396 (44%), Gaps = 16/396 (4%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + +L+ L+ ++ +VGG VRD+L+ DID+ATT P+ VMR + Sbjct: 12 ALLERPGVRRVLAALDAPGAETRLVGGCVRDALLGAQTADIDMATTHRPEAVMRAAQRAH 71 Query: 68 Y-KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 K +PT I +GT+ ++ ++TTLR D+ TDGR+A V F D+ D+ RRDFT+NA Sbjct: 72 GLKAVPTGIEHGTVTLVTEDGPIEVTTLREDVETDGRHAVVRFGTDFLRDAERRDFTVNA 131 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 L G + D VGG DL ++FIGD RI ED LRILRFFRF A +G D+ Sbjct: 132 LSLGADGSLHDPVGGRPDLAAGRVRFIGDPATRIREDALRILRFFRFHARFGAGAPDAAA 191 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L A + A+ L LS ER+ +E KLL A + + G+ I V E+ Sbjct: 192 LAACVAARDSLDRLSRERVRAEFLKLLAAPGGPALVTTLSATGLLARITGGVGELG---- 247 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + + + R L + + + ++ L + L+ + + Sbjct: 248 ----RLARAAGAGLPPVKRLAAL-AVGARHDADRLRERLRLSKSEHGHLLGYAEVLADLH 302 Query: 307 T---LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 L + L +G + L I +T + + + P F Sbjct: 303 GCAVLDAVAARALAARHGLSCLADTLAILAGEPRPAVTEAARAALRALEGE---GASPAF 359 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399 PL G D+V G+ PG +G L ++ W+ Sbjct: 360 PLAGADLVAAGVAPGPGIGRGLAAARKVWLERGCPT 395 >gi|198277607|ref|ZP_03210138.1| hypothetical protein BACPLE_03829 [Bacteroides plebeius DSM 17135] gi|198270105|gb|EDY94375.1| hypothetical protein BACPLE_03829 [Bacteroides plebeius DSM 17135] Length = 536 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 86/449 (19%), Positives = 176/449 (39%), Gaps = 58/449 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT--SI 75 I ++ + +VGG VRD +N +DID+ + + F K + Sbjct: 75 ISETADELGLECYVVGGYVRDIFLNRPSKDIDVVVVGSGIEMAQAFGKKLGRGAHVSVFK 134 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--- 132 ++GT ++ + + R + + +V + D RRDFTINA+ Sbjct: 135 NFGTAQVKFKDTEVEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINAMAVCLNKAR 194 Query: 133 -GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GGL+DL+ RTI+ D +D LR++R RF ID + A Sbjct: 195 FGELVDPFGGLDDLKERTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDETFEALE 253 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + K+ +KI+S ERI E+NK+L + P + + G+ + IF ++ + ++ Sbjct: 254 RNKERIKIISRERIADELNKILLSPVPSKGFIDLDRCGLLELIFPELVALQGVEVRNGRG 313 Query: 252 AEQVFEWKI-----------DSLLRFIVLISWQDKKSILS-------------------- 280 + F + D LR+ L+ K Sbjct: 314 HKDNFYHTLEVVDNISRVSNDLWLRWATLLHDIGKPRTKRWEPKAGWTFHNHNFIGEKMI 373 Query: 281 --MAKKFSLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIF 332 + +K LP E ++ + ++ E +++L + GD + + + Sbjct: 374 PEIFRKMKLPMNEKMKYVQKLVGLHMRPIVIADEEVTDSAVRRLLFEAGDDI-DDLMMLC 432 Query: 333 LALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + F+ L+ L + + P+ G ++++ + + P +++G Sbjct: 433 EADITSKNEARKQRFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGAEIMQVFNLQPCREIG 492 Query: 383 NILVHCKQEWINSSFQLSQEDL-HHLLRK 410 ++ K ++ + + ++L+K Sbjct: 493 SLKSSIKDAILDGAIPNEHDAAFEYMLKK 521 >gi|29830842|ref|NP_825476.1| RNA nucleotidyltransferase [Streptomyces avermitilis MA-4680] gi|29607955|dbj|BAC72011.1| putative RNA nucleotidyltransferase [Streptomyces avermitilis MA-4680] Length = 480 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 83/454 (18%), Positives = 165/454 (36%), Gaps = 59/454 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ D+D T P+ V++I + Sbjct: 30 ADELARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAMWEVG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 90 IAFGTVGAQKEGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + ID GGL+DL R ++ G +D LR++R RF A + + D + A + Sbjct: 150 KEFIDPHGGLDDLAARILRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAPDVVTAMTE 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 + I+S+ER+ E+NKL+ + +P + + + G+ + ++ + L++ Sbjct: 209 MAGRIDIVSAERVRDELNKLVLSAHPRKGLTLLVDTGLADHVLPELPALRLERDEHHRHK 268 Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 L + +A + E D LR L+ K K Sbjct: 269 DVYDHSLIVLEQAIALEENGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVGAKM 328 Query: 284 ------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 ++ + + P + +L L Sbjct: 329 TKKRMTALKYSNDLVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHKLTR 388 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL ++ LQ ++ + L G+ +++ G+ PG Sbjct: 389 SDCTTRNKRRAAALSRAYDGLEERIAQLQEQEELDAIRPD---LDGNQIMEVLGVGPGPV 445 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +G + + + + + L++ A Sbjct: 446 IGQAYKFLLELRLENG-PMEYDAAVAALKEWWAE 478 >gi|289435254|ref|YP_003465126.1| polyA polymerase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171498|emb|CBH28042.1| polyA polymerase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 393 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 175/401 (43%), Gaps = 23/401 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IFS T Sbjct: 6 KRALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFSST----FD 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ + + +++TT R++ D R +V F R + D LRRDFT+NA+ D Sbjct: 62 TGIAHGTVTVRENGECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMD 121 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ ++ D G ++N+ IK +G A R ED LR++R RF + + +++ + A Sbjct: 122 EKFQLHDPFSGRISIQNKEIKAVGKAQERFHEDALRMMRAIRFLSQL-DFHLEKETEAAL 180 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 L+ S ERI E K+++ A+ + + + + +L + + Sbjct: 181 QSQIALLQHTSVERITVEWVKMIKGPAVKRAMDLLLKVE-MENFLPGLKGKASALKEFAS 239 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ E I ++ L++ ++ + K + LP + + + N+K + Sbjct: 240 WDWEKRTTENAI-----WLGLVTTVQPSNVTTFLKAWKLPNKTIQLVGKTYQYALNKKQV 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + Y G V +I + + N + + + K +TG Sbjct: 295 WSADE---LYHAGVDVFSLVNEINVIQYGENQQET----LNRAYQALPIHSKKDLAITGA 347 Query: 369 DVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 D++K+ G + L ++ I + + + L Sbjct: 348 DLLKWSNEQAGPWMKETLEKIERAVILEEIENEKNQIRRWL 388 >gi|241889742|ref|ZP_04777040.1| CCA-adding enzyme [Gemella haemolysans ATCC 10379] gi|241863364|gb|EER67748.1| CCA-adding enzyme [Gemella haemolysans ATCC 10379] Length = 386 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 180/401 (44%), Gaps = 35/401 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+IL + N+ ++ VGG VRD L+ DIDI T LPD+V ++F K+ I T Sbjct: 13 AIDILKIFNQNGYEAYFVGGCVRDYLLGEDFSDIDITTNALPDQVKKVFRKS----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ +++TT R++ + R + V F + + D RRDFTINA+ D Sbjct: 69 IQHGTVTILVNGDSYEVTTFRTEEDYANHRSPEKVEFVSNLREDLDRRDFTINAMALDYN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ DY G +DL ++ I+ + + + R ED LR+LR FRF + G I+++ L A K Sbjct: 129 GKLFDYHNGDSDLSSKIIRTVNNPNERFYEDALRMLRAFRFSSKLG-FEIENNTLNAIKK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + +K +S ERI +E KLL K L ++ + + + + + +V Sbjct: 188 NAELIKFVSIERIVNEFKKLLAGKGNLRSLELLLDSKL---------NLYIPFFKEVNTV 238 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSIL-SMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + + + L + D IL K L + + F N K + Sbjct: 239 QDLSSYSFCQSLYILS-----DINDILFEKLKFLKLSNKEIKLIKQFDLINQEFKNTTPI 293 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 E+ + Y Y + + + Y+ + D C + D +T ++++ Sbjct: 294 EL--ILYKYNREDVKF---VCDYFGYDEEKNIDKCILTINSFD-------DIDITSEEII 341 Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 Y PG + ++ +++ + ++ D+ L L Sbjct: 342 NYIEKKPGPWIKTVISIIEKDILLHRLNNNKIDILDFLSNL 382 >gi|254852809|ref|ZP_05242157.1| polyA polymerase [Listeria monocytogenes FSL R2-503] gi|300763785|ref|ZP_07073782.1| polyA polymerase [Listeria monocytogenes FSL N1-017] gi|258606136|gb|EEW18744.1| polyA polymerase [Listeria monocytogenes FSL R2-503] gi|300515521|gb|EFK42571.1| polyA polymerase [Listeria monocytogenes FSL N1-017] Length = 393 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 173/399 (43%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N + D+DIAT+ P+ V IF + T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRMISDVDIATSAFPEEVKEIFQTS----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQVI 250 + L+ S ERI E K+++ K AI + + +++ +L + + Sbjct: 183 QIELLQHTSVERITVEWIKMMKGKAAKRAIELLLKVK-METYLPGLKDEKSALSEFASWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ E I ++ L+ ++ + K + LP + + + N K + Sbjct: 242 WEKRTTEESI-----WLGLVVAVKPNNVNAFLKAWKLPNKTIQLVNKAYQYALNMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 TEE---LYHAGKAVFSLVNELNVIRGQENNQHK----VSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 350 LKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388 >gi|262037488|ref|ZP_06010947.1| tRNA adenylyltransferase [Leptotrichia goodfellowii F0264] gi|261748418|gb|EEY35798.1| tRNA adenylyltransferase [Leptotrichia goodfellowii F0264] Length = 586 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 110/439 (25%), Positives = 185/439 (42%), Gaps = 47/439 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +SD+ IL LN +VGGAVRD + D D AT I +++ IF + Sbjct: 6 NSDVKFILEQLNNNG-TGFLVGGAVRDLITGKEPYDYDFATDIEYEKLKEIFKN--FSPK 62 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYA 129 +G + I K+++I R + + + R+ K V F + D RRDFT+NA+ Sbjct: 63 EVGAHFGILIIKVNGKHYEIAKFRKETGVLNSRHPKSVKFIDTIEEDLSRRDFTVNAMAY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ +ID GG D+ NR I+F+G RI ED LRI+R FRF + G K +D A Sbjct: 123 NEIRGLIDLFGGKKDIENRIIRFVGKPKIRIEEDALRIMRAFRFISQLGFK-LDKKTSEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 KK L +S ERI++E++++L A+ M G+ + I + + Sbjct: 182 IYLKKKFLNKISKERIFTELSRILTGPCMKRALRMMKKCGVLEMIIPEFDYAYDFDQNNS 241 Query: 250 IEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSM-------------------- 281 + + +FE D + RF L K S S+ Sbjct: 242 YKKDLLFEHIIKVTDLCHPDLITRFAALFHDLGKISTKSIDAKGKFHYYGHEKESVLIAE 301 Query: 282 --AKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA--LH 336 K+ +P + + + N + +S EIKKL G+K + +F A L Sbjct: 302 NCLKELRVPNDFLHSVKKIVLNHMIVYQEISDREIKKLIINLGEKDLARLFDLFNADFLC 361 Query: 337 YNNLTHQDTCFILQVLSDIIHWKK-------PLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 N+ ++ + ++ I K +TG D++ G P +G I Sbjct: 362 KNSNEYKKENPVGKLKKRIEEIKSRGYIPSLRELDITGADLISLGFEP-INIGEIKNDIY 420 Query: 390 QEWINSSFQLSQEDLHHLL 408 ++ ++ + + +E++ L Sbjct: 421 EQVLDETVKNEKEEILKYL 439 >gi|167462324|ref|ZP_02327413.1| tRNA CCA-pyrophosphorylase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381850|ref|ZP_08055804.1| tRNA CCA-pyrophosphorylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154238|gb|EFX46560.1| tRNA CCA-pyrophosphorylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 455 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 94/441 (21%), Positives = 183/441 (41%), Gaps = 53/441 (12%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L++ ++ VGG VRD L+ V+D DIAT LP++VM F KVIPT + Sbjct: 12 SVIQQLHRHGYEAYFVGGCVRDELLGRPVKDFDIATAALPEQVMGCFE----KVIPTGLQ 67 Query: 77 YGTIKIICRKKYFDITTLRSDLITD--GRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ I+ F++TT R + + R +V + D D RRDFT+NA+ G+ Sbjct: 68 HGTVTILAEGFAFEVTTFRKESEYEQFRRPKEVCYITDLNEDLRRRDFTMNAMAIGLDGR 127 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG DL ++ +G R ED LR+LR RF + Y + I+ A + A Sbjct: 128 IIDPFGGQEDLAKGLLRCVGQPDERYREDALRMLRAIRFASTYALR-IEECSWQALLSAA 186 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L+ ++ ER+ +E+ +++ P +A+ + G+++ F D +SL+ L + + + Sbjct: 187 PLLRHIAMERVRTELERMVAGPAPEHAVDLLLKSGLWEH-FKDPLHVSLNMLGE--DPAK 243 Query: 255 VFEWKIDSL------LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF--------- 299 + +D L + L++ K + + + + + + Sbjct: 244 MLLPVLDELPDLQDRWTLLFLLAGAKAKEASRAMRSLTFSNQDLFTVKNILASAETLANE 303 Query: 300 ---NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN----------------- 339 + ++ + ++ KL + + + L + Y Sbjct: 304 IVSERKGSMESCTSEKLWKLTAVRQSGISLFSLARIVTAVYPRFYAKPGRKTESLQAGTP 363 Query: 340 -------LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP-GKKVGNILVHCKQE 391 L ++ L I + +TG D++K+ G + +L ++ Sbjct: 364 FYALLHILGEDIWKNGIRWLEQIPCKEVKALAITGRDLMKHFDQKGGPWLKTLLQCLLEK 423 Query: 392 WINSSFQLSQEDLHHLLRKLI 412 + +E L + + Sbjct: 424 VALNVLPNDREKLLEEAERYM 444 >gi|283768261|ref|ZP_06341174.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bulleidia extructa W1219] gi|283105138|gb|EFC06509.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bulleidia extructa W1219] Length = 404 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 100/398 (25%), Positives = 169/398 (42%), Gaps = 20/398 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ L ++ +VGGA+R+ L+ ++D D+ T P+ +MR F Y IPT Sbjct: 9 IQKLIHELQNHGYEAYLVGGAIRNHLLGYPIKDYDLTTNATPEEMMRFFQN--YPTIPTG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + +ITT R D D R+ +V F+ K D RRDFTINAL QQ Sbjct: 67 IQHGTLTVLSQGHPIEITTYRVDGEYQDHRHPNQVQFSSSLKEDCARRDFTINALCYHQQ 126 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D+ G DL R I+ IG A R ED LRILR RF A I+ + A K Sbjct: 127 EGLVDFFQGQRDLEKRLIRCIGKAEDRFEEDALRILRALRFAARLN-FEIEKETAQAMFK 185 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L +S ERI SEI +L + ++ IF + +I + + +VI+ Sbjct: 186 KKDLLAFISKERIHSEIIQLFSYPKSGQFLEPYFD--IFISAIPSLSQIQKEVVFKVIQK 243 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 E + + R +L S S+ K F+ + + + Sbjct: 244 E-----PLSQISRLALLFSTLSDY--HSVLKNFTFSNQEIQKIETILQYQSLPIKEDYDG 296 Query: 313 IKKL-FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + L + + ++ ++ + +L Y++L ++ Q+ I G D Sbjct: 297 YRILSLFSNVEDYLLYRVALTESLDYSSLL----SWLKQLKEKPIPTSLSELKFNGYDAK 352 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G G ++ +L + +L + Sbjct: 353 RLGYE-GIEIKKLLNELLDLCMQEKIVNHHHELLKYAQ 389 >gi|114799278|ref|YP_759076.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Hyphomonas neptunium ATCC 15444] gi|114739452|gb|ABI77577.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Hyphomonas neptunium ATCC 15444] Length = 381 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 122/380 (32%), Positives = 195/380 (51%), Gaps = 15/380 (3%) Query: 32 VGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDI 91 VGG+VR++L L +D+DIAT +LP +VIPT I +GT+ + +I Sbjct: 15 VGGSVRNTLRGLKAEDVDIATQLLPQETAAALEAAGIRVIPTGIEHGTVTAFYKGVPIEI 74 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY-VGGLNDLRNRTI 150 TTLR D+ TDGR A V FT+DW D+ RRDF +NA+YA +G++ + G ++D + Sbjct: 75 TTLRRDVETDGRRAVVAFTQDWAEDAARRDFRMNAIYAGAEGELYEVIPGSIDDAIAGRV 134 Query: 151 KFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 FIG+ R++EDYLRILRF+RF A YG ID DG A + ++GL+ +++ERIW E+ Sbjct: 135 IFIGEGDQRLIEDYLRILRFYRFNAWYG-AGIDEDGQGACARQREGLRKIAAERIWKELK 193 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLI 270 + L A +P A+ M G+ + + L L+ V E D + R + L+ Sbjct: 194 RTLAAPDPAPAMAAMEEAGVLEILLPGASAALLPGLAAV---EAANGLAPDPMQRLMALL 250 Query: 271 SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK-LFYLYGDKVMIAKL 329 + ++ + A L + L ++ + P ++ Y + + ++ + Sbjct: 251 PRR-QRDVTDAANALRLSNQEAARLQAWADPALGHVLALGPAPRREACYRFTPQAVLDRA 309 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 I A + +L + HW +P+FP+ G D + G+ G +G L + Sbjct: 310 LIEAASGGEG-------SLTPLLQEKAHWMRPVFPIGGQDALAAGLK-GPDIGKRLYTLE 361 Query: 390 QEWINSSFQLSQEDLHHLLR 409 Q WI S F+LS+EDL L+ Sbjct: 362 QAWIASGFRLSREDLLSRLK 381 >gi|320528618|ref|ZP_08029771.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Solobacterium moorei F0204] gi|320130984|gb|EFW23561.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Solobacterium moorei F0204] Length = 393 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 103/399 (25%), Positives = 196/399 (49%), Gaps = 17/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ LLN+ + +VGGA+R++L+ L + D D+ T PD ++++FS ++V+ T Sbjct: 9 IQVLIDLLNQNHYSAYVVGGAIRNALLELPIHDYDLTTDATPDEMLQVFSS--HRVLKTG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GTI ++ + + +ITT RS+ + D R+ V+F+ + K D RRDFTINAL + Sbjct: 67 IQHGTITVLSKGQPVEITTFRSENVYEDHRHPSGVLFSDNIKEDCKRRDFTINALCYNNN 126 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D+ GG+NDL N+ I+ IG+A+ RI ED LRILR RF I+ + A K Sbjct: 127 EGLLDFFGGVNDLSNKIIRCIGNANERIDEDALRILRALRFAGRL-SFTIEENTATAIHK 185 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L +S ERI SE +LE N L++I+ Y + + +++E + + Sbjct: 186 QKDLLHYISEERIHSEWIGILET-NALSSILTEY-SDVIQVFIPELKENIIQE-----SI 238 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + + + +R +L+ ++ ++ + ++ + ++S + + I Sbjct: 239 SSINQSPLSANIRMAILL--KEIPNVKEILERLKYSGAEQTVILSCIQNSMQPLSSKIEL 296 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + L L + + + Y T + + + K + G+ V + Sbjct: 297 KRFLSTLKIPFDTYHQYRSAIDSSYQKETIHAYYQEIHNMHEPYQLK--ELAIDGNTVKE 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 +G GK + +IL C I + E L ++++++ Sbjct: 355 FGYQ-GKDIADILQRCLNAVIEKPENNTVEYLTNMIKRI 392 >gi|260893598|ref|YP_003239695.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ammonifex degensii KC4] gi|260865739|gb|ACX52845.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ammonifex degensii KC4] Length = 473 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 94/461 (20%), Positives = 174/461 (37%), Gaps = 67/461 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 LI +L +L + ++ +VGGAVRD L+ D+D+AT+ P V+ + + K + Sbjct: 9 LIKVLKMLEEAGFEAYVVGGAVRDYLLGKPPVDLDVATSARPQEVLDLVVQKGLKAVTYG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG--RYAKVVFTRDWKADSLRRDFTINALYADQQ 132 ++G + ++ ++ T RS++ + R KV F + D RRDFTINA+ D + Sbjct: 69 AAFGVVGVLVEGSLVEVATFRSEVYGEDPHRPEKVDFLGRLEEDLARRDFTINAMAMDLR 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ D GG DLR R I+ +G+ R ED LR R RF A G ++ A + Sbjct: 129 GKLYDPFGGQEDLRRRIIRAVGNPIKRFQEDALRAFRACRFAAQLG-YQVEPRTRSALSQ 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIFLDV 238 K+ + LS ER+ EI ++L + P + G+ I ++ Sbjct: 188 VKERVARLSVERVRDEIERILISDYPNVGFELLREAGLLLSFCRRKNKGREEQVPILPEL 247 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL--------LRFIVLISW------------------ 272 + + V+ + L LR+ L+ Sbjct: 248 ARLYGVAQNPRYHQYDVWGHTMAVLQNCPPQIALRWAALLHDVAKGLPGVRKLNRRGELC 307 Query: 273 ------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL-----YG 321 + + ++ + +I + + L + K + Sbjct: 308 DHRHEVHSAQIAARILRRLRVRPQIARRAVFLIRHHMFLPGLKERNVIKWISRLAGEFHN 367 Query: 322 DKVMIAKLKIFLALHYNNLTH---------QDTCFILQVLSDIIH---WKKPLFPLTGDD 369 + + L AL +L ++ + Q++ +I+ + LTG D Sbjct: 368 RRELETALDELFALRRADLEGGKVEAEKRLRELEELRQLVEEILTRLPFYPSDLALTGKD 427 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +V + G ++G +E + +E L + + Sbjct: 428 LVTL-LGEGPQIGKAQRELLREVQSGRLPNEREALWRFVER 467 >gi|226227317|ref|YP_002761423.1| tRNA nucleotidyltransferase [Gemmatimonas aurantiaca T-27] gi|226090508|dbj|BAH38953.1| tRNA nucleotidyltransferase [Gemmatimonas aurantiaca T-27] Length = 446 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 111/435 (25%), Positives = 185/435 (42%), Gaps = 28/435 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M ++ + +I + L + VGGAVRD+L+ ++ D D+AT P +V Sbjct: 1 MSTLDERGLRVPGAVIELARTLQDAGFPTWCVGGAVRDALLGRALLDFDLATAATPAQVR 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 R+F +T IP I +GT+ ++ R + ++TT R D+ TDGR+A V F D R Sbjct: 61 RLFRRT----IPVGIEFGTVGVLDRDGRMHEVTTFRHDVKTDGRHAVVEFGASLDEDLAR 116 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+ D ++ D G DL ++ +G A R+ ED LR LR RF + +G Sbjct: 117 RDFTINAIAFDPIARRLHDPFRGREDLLAGVVRAVGVAEERMREDRLRALRAIRFASRFG 176 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEA-KNPLNAIVHMYNGGIFKEIFLD 237 I+ + VA + L LS ER+ EI+K LE P A + G F + Sbjct: 177 -FEIERETWVAIEASAAHLTRLSPERVKQEIDKTLEQVDAPSVAFARWRDAGAFAAVVPA 235 Query: 238 VQEISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSMAKKFSLPREI---- 291 + ++ L+ + + + LR L S + K + + Sbjct: 236 LAQVPDGTLAAIDRLPRAVTPTRPLRRTLRLATLFSSLEGKEATRALRALRASNQEISVV 295 Query: 292 -------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + F + S P ++++ G + A L++ A H+ T Sbjct: 296 GALVDGWQRFGTALEAHLVAGSLPSDPALRRIAADVGRLRVNALLRLG-AAHWAGDTRIA 354 Query: 345 TCFILQVLSDIIH------WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 + Q+ + H + + GDD+ ++G+ G +G +L H + I + Sbjct: 355 PRLVRQLFRRLTHIAFHDPIEIADLAIDGDDLRQHGLRAGPALGRVLQHLRHLVIEDPSR 414 Query: 399 LSQEDLHHLLRKLIA 413 +E L L + IA Sbjct: 415 NQREILLALAGEWIA 429 >gi|217963943|ref|YP_002349621.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Listeria monocytogenes HCC23] gi|254813696|sp|B8DC21|CCA_LISMH RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|217333213|gb|ACK39007.1| cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl- transferase) (trnacca-pyrophosphorylase) (trna-nt) [Listeria monocytogenes HCC23] gi|307571487|emb|CAR84666.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Listeria monocytogenes L99] Length = 393 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 173/399 (43%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF + T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQTS----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FALHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALES 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--ISLDQLSQVI 250 + L+ S ER+ E K+++ K AI + + +++ +L + + Sbjct: 183 QIELLQHTSVERMTVEWIKMMKGKAAKRAIELLLKVK-METYLPGLKDEKPALSEFASWD 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ E I ++ L+ ++ + K + LP + + + K + Sbjct: 242 WEKRTTEESI-----WLGLVVAVKPNNVNAFLKAWKLPNKTIQLVNKAYQDALKMKETWL 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + Y G V ++ + N H+ + Q + K +TG D+ Sbjct: 297 TDE---LYHAGKAVFSLVNELNVIRGQENNQHK----LSQAYEALPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G V L + +++ + + L Sbjct: 350 LKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWL 388 >gi|203284602|ref|YP_002222342.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia duttonii Ly] gi|201084045|gb|ACH93636.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia duttonii Ly] Length = 432 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 113/413 (27%), Positives = 180/413 (43%), Gaps = 22/413 (5%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + D+I I + N + +VGGA+RD L+ D D T P +M++F K Sbjct: 31 NTKDIIKISQIFNNHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPKEIMKLFPKN---- 86 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALY 128 I T I +GTI II KK F+ITT R D+ + + + + FT++ K D RRDFTINA+ Sbjct: 87 IQTGIKHGTISIIFNKKIFEITTYRIDIDYENKRSPKQIKFTKNLKEDLKRRDFTINAIA 146 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 ++IDY G DL + IK IG+ + R ED LRILR RF + ID + L Sbjct: 147 MHTLNFEIIDYYNGQQDLNKKIIKCIGNPNKRFEEDALRILRAARFASTLN-FTIDKNTL 205 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 ++ K + LS ERI +E KLLE +NP I ++ FK F +++ Sbjct: 206 ISMKYKKNNILFLSKERINNEFIKLLEGENPTKGIKYLQKINFFKYFF------NIEINK 259 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF---NCNFN 304 ++I+ + L ++ QD ++ K + ++ + N Sbjct: 260 KLIKKITLLNKNKFYLKAIVIFTIKQDISNLKQNLKLLKFSNKDIKLILLYKTTINAIHK 319 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361 + I+ + L I+ AL N + + ++L D + K Sbjct: 320 LNPKKLHHIRIFLSKTTRENYKETLDIYKALKGKNNKFKFITNKIKNNKLLRDPLSLK-- 377 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + G+DV K+ + K G IL H E + +E L ++ + Sbjct: 378 ELQINGNDVQKFQLRTHKNTGIILNHLLNEVLIEPKLNKKEILLQKIKDQYSQ 430 >gi|203288136|ref|YP_002223151.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia recurrentis A1] gi|201085356|gb|ACH94930.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Borrelia recurrentis A1] Length = 432 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 113/413 (27%), Positives = 180/413 (43%), Gaps = 22/413 (5%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + D+I I + N + +VGGA+RD L+ D D T P +M++F K Sbjct: 31 NTKDIIKISQIFNNHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPKEIMKLFPKN---- 86 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALY 128 I T I +GTI II KK F+ITT R D+ + + + + FT++ K D RRDFTINA+ Sbjct: 87 IQTGIKHGTISIIFNKKIFEITTYRIDIDYENKRSPKQIKFTKNLKEDLKRRDFTINAIA 146 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 ++IDY G DL + IK IG+ + R ED LRILR RF + ID + L Sbjct: 147 MHTLNFEIIDYYNGQQDLNKKIIKCIGNPNKRFEEDALRILRAARFASTLN-FTIDKNTL 205 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 ++ K + LS ERI +E KLLE +NP I ++ FK F +++ Sbjct: 206 ISMKYKKNNILFLSKERINNEFIKLLEGENPTKGIKYLQKINFFKYFF------NIEINK 259 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF---NCNFN 304 ++I+ + L ++ QD ++ K + ++ + N Sbjct: 260 KLIKKITLLNKNKFYLKAIVIFTIKQDISNLKQNLKLLKFSNKDIKLILLYKTTINAIHK 319 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361 + I+ + L I+ AL N + + ++L D + K Sbjct: 320 LNPKKLYHIRIFLSKTTRENYKETLDIYKALKGKNNKFKFITNKIKNNKLLRDPLSLK-- 377 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + G+DV K+ + K G IL H E + +E L ++ + Sbjct: 378 ELQINGNDVKKFQLRTHKNTGIILNHLLNEVLIEPKLNKKEILLQKIKDQYSQ 430 >gi|326928160|ref|XP_003210249.1| PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like [Meleagris gallopavo] Length = 385 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 13/337 (3%) Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 + ++ F+ITTLR D++TDGR+A+V FT DW+ D+ RRD TIN+++ G + Sbjct: 60 FRLGTSKLHEQNFEITTLRIDVVTDGRHAEVEFTTDWEKDAERRDLTINSMFLGLDGMLY 119 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD--GLVASIKAK 194 D+ G DL+++ I+F+G A RI EDYLRILR+FRF+ EK D + L A + Sbjct: 120 DFFNGYEDLKSKKIRFVGKATARIQEDYLRILRYFRFYGRIAEKPGDHESSTLQAIKENA 179 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 KGL +S ERIW E+ K+L K+ + + +Y+ + + I L V +LD+L +V + + Sbjct: 180 KGLAGISGERIWVELKKILIGKHVNHLVRLLYDLDVAQYIGLPV-NGNLDELDRVSKNTE 238 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 K ++ L +D + L + K S + F + + T P Sbjct: 239 NLCPKPMTV--LTSLFKVKDDVTNLDLRLKISKEEKNLGFFLLKHREELTKATGPEPLKP 296 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 ++ + KI L Y +L ++ W P FP++G D+ K G Sbjct: 297 YQDFIMDSREANTISKILELLKYQGEEQ--------LLKEMQQWTVPTFPVSGHDLRKMG 348 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 I GK++G+ L ++EW S + + +E+L ++K+ Sbjct: 349 ITCGKEIGSALQQLREEWKKSGYCMDKEELLSCMKKV 385 >gi|255530766|ref|YP_003091138.1| polynucleotide adenylyltransferase region [Pedobacter heparinus DSM 2366] gi|255343750|gb|ACU03076.1| Polynucleotide adenylyltransferase region [Pedobacter heparinus DSM 2366] Length = 468 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 181/463 (39%), Gaps = 59/463 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +QH F L I + ++ IVGG VRD +N +DIDI Sbjct: 1 MEQHLQHPVFKS--LARIADM---HHIEAYIVGGYVRDIFLNRPSKDIDIVVLGNGIEFA 55 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + K + ++GT + + + R + +V + D LRR Sbjct: 56 ELVGKQLQSKVAVFKNFGTAMLKYQDLEIEFVGARKESYRSDSRKPIVENGTIEDDQLRR 115 Query: 121 DFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL G+++D G+ DL N+ I+ D +D LR++R RF Sbjct: 116 DFTINALAISLNKENYGQLVDPFNGIADLNNKLIRTPLDPELTFSDDPLRMMRAIRFATQ 175 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 ID+ + A K K+ + I+S ERI E+NK++ ++ P ++++ G+ + +F Sbjct: 176 LN-FTIDAAAINAIKKQKERIGIVSKERITDELNKIILSEVPSIGFKYLFDTGLLQLVFP 234 Query: 237 DVQEIS----------LDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAK-- 283 + + D ++ + + D LR+ ++ K + + Sbjct: 235 QMANLYGVDIINGKGHKDNFYHTLQVLDNICGTTSDLWLRWAAILHDIAKPATKRFEEGH 294 Query: 284 --------------------KFSLP-REIRYFLISFFNCNFN-----QKTLSIPEIKKLF 317 + LP E F+ + Q+ ++ +++L Sbjct: 295 GWTFHGHEDKGARMVPKIFAQLKLPLNEKMKFVQKLVQLHLRPIVLAQEVVTDSAVRRLL 354 Query: 318 YLYGDKV----MIAKLKIFLALHYNNLTHQDTCFI----LQVLSDIIHWKKPLFPLTGDD 369 + G+ + ++ + Y +++ + L+ + + + P++G+D Sbjct: 355 FDAGEDIESLMLLCNADVTTKNEYKVKKYRNNFELVKQKLRDVEERDKIRNWQPPISGND 414 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410 +++ +G+ GK+VG I ++ + + + L +L K Sbjct: 415 IMETFGLSAGKEVGLIKNAIREAILEGEITNTYDNALQFMLEK 457 >gi|302543982|ref|ZP_07296324.1| tRNA adenylyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302461600|gb|EFL24693.1| tRNA adenylyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 91/463 (19%), Positives = 168/463 (36%), Gaps = 68/463 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T PD V++I V Sbjct: 16 ADDLARRFQQAGFSLALVGGSVRDALLGRLGNDLDFTTDARPDEVLKIVRPWADAVWEVG 75 Query: 75 ISYGTIKIICRK---------KYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTI 124 I++GT+ +ITT RS+ R +V + + D +RRDFT+ Sbjct: 76 IAFGTVGCQKEGPGDNGTHQSFQIEITTYRSEAYDRTSRKPEVSYGASIEEDLVRRDFTV 135 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ Q + ID GL DL R ++ G +D LR++R RF + + + Sbjct: 136 NAMAVALPQKEFIDPHNGLEDLAARVLRTPGTPQESFSDDPLRMMRAARFASQL-DFEVA 194 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + + A + I+S+ER+ E+NKL+ P + + G+ + ++ + L Sbjct: 195 PEVVAAMKAMAGRIDIVSAERVRDELNKLVLGAYPRKGLRLLVETGLADCVLPEIPALRL 254 Query: 244 DQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------- 283 ++ L+ + +A + E D +LR L+ K K Sbjct: 255 ERDEHHRHKDVYEHSLTVLDQAMDLEENGPDLVLRLAALLHDIGKPKTRRFEKDGRVSFH 314 Query: 284 ---------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PE 312 K E+ + + P Sbjct: 315 HHEVVGAKMTKSRMTKLKYSNELVKEVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPL 374 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + +L L + +AL ++ LQ ++ + L G++++K Sbjct: 375 LDRLHKLTRSDCTTRNKRKAMALSRAYDGLEERIARLQEQEELEAIRPD---LDGNEIMK 431 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 GI PG +VG H + + + ++ LR+ A+ Sbjct: 432 VLGIAPGPEVGKAYKHLLELRLEHG-PMGRDAAVAALREWWAA 473 >gi|313637213|gb|EFS02729.1| CCA-adding enzyme [Listeria seeligeri FSL S4-171] Length = 393 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 92/401 (22%), Positives = 175/401 (43%), Gaps = 23/401 (5%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IFS T Sbjct: 6 KRALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFSST----FD 61 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ + + +++TT R++ D R +V F R + D LRRDFT+NA+ D Sbjct: 62 TGIAHGTVTVRENGECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMD 121 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++ ++ D G ++N+ IK +G A R ED LR++R RF + + +++ + A Sbjct: 122 EKFQLHDPFSGRISIQNKEIKAVGKAQERFHEDALRMMRAIRFLSQL-DFHLEKETEAAL 180 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ 248 + L+ S ERI E K+++ A+ + + + + +L + + Sbjct: 181 QSQIELLQHTSVERITVEWVKMIKGPAVKRAMDLLLKVE-MENFLPGLKGKASALKEFAS 239 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 ++ E I ++ L++ ++ + K + LP + + + N+K + Sbjct: 240 WGWEKRTTENAI-----WLGLVTTVQPSNVTAFLKAWKLPNKTIQLVGKTYQYALNKKQV 294 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 E Y G V +I + + N + + + K LTG Sbjct: 295 WSAEE---LYHAGVDVFSLVNEINVIQYGENQQET----LNRAYQALSIHSKKDLALTGA 347 Query: 369 DVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 D++K+ G + L ++ I + + L Sbjct: 348 DLLKWSNEQAGPWLKETLEKIERAVILEEIDNEKNQIRRWL 388 >gi|319892449|ref|YP_004149324.1| tRNA nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317162145|gb|ADV05688.1| tRNA nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] Length = 400 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 91/408 (22%), Positives = 168/408 (41%), Gaps = 27/408 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL L + ++ VGG+VRD +MN + D+DI T PD + +F T IP Sbjct: 9 AKPILERLIQHGYEAYFVGGSVRDFIMNRPIHDVDITTNATPDEIESLFEHT----IPIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R +V F RD D RRDFT+NA+ + Sbjct: 65 KEHGTINVVWSHENYEVTTFRAEAEYVDHRRPTEVYFVRDLYQDVERRDFTMNAIAMNIN 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + ID+ G D+ R I+ +GDA R ED LRILR RF + G I+ A Sbjct: 125 YERIDHFEGERDIEQRIIRTVGDAKTRFDEDALRILRGLRFKSQLG-FTIEEATFEAMAH 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ LS ERI +E+ L++ + +++ I + Sbjct: 184 QMSDLEYLSIERIMNELTLLIKGTFVAKTFPILEALQLWRYI-------------PYFKD 230 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP- 311 V KI++ + ++ ++ K L + + + +T+ Sbjct: 231 VDVAAIKINAPIDMEAFLAILSYRTNYQAFKSLKLSNAQVRTIQTLISAIQVAQTIDTKV 290 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLT 366 ++++ Y +G +V + ++ L N + + + V D+ + + Sbjct: 291 QLQQFTYDFGLEVAVKINELRPILEDNQIDLPSPIIFSSASLQAVWEDLPIQSREDLAID 350 Query: 367 GDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G ++ + + G + ++L + I E + +R + Sbjct: 351 GKWLMQAFQLKGGPWIKDVLRQVECAVIQRQVNNQTEAIIEWVRTHVK 398 >gi|329938655|ref|ZP_08288051.1| RNA nucleotidyltransferase [Streptomyces griseoaurantiacus M045] gi|329302146|gb|EGG46038.1| RNA nucleotidyltransferase [Streptomyces griseoaurantiacus M045] Length = 488 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 86/462 (18%), Positives = 167/462 (36%), Gaps = 67/462 (14%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++ + +VGG+VRD+L+ D+D T P+ V+RI V Sbjct: 27 SPAADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLRIVRPWADAVW 86 Query: 72 PTSISYGTIKIICR--------KKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDF 122 I++GT+ + + ++TT RS+ R +V + + D +RRDF Sbjct: 87 DVGIAFGTVGVQKDARVGDTVQRFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDF 146 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NA+ + + ID GL+DL R ++ G +D LR++R RF A + Sbjct: 147 TVNAMAVALPEKEFIDPHHGLDDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFE 205 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + D + A + ++I+S+ER+ E+NKLL + +P + + G+ + + ++ + Sbjct: 206 VAPDVVAAMKEMAGRIEIVSAERVRDELNKLLLSAHPRKGLTLLVETGLAQYVLPELPAL 265 Query: 242 SLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK----- 283 L++ L + +A + E D LR L+ K + Sbjct: 266 RLERDEHHRHKDVYDHTLIVLEQAIALEEDGPDLTLRLAALLHDIGKPRTRRFEQDGRVS 325 Query: 284 -----------------KFSLPREIRYFLISFFNCNFNQKTLSI---------------- 310 E+ + + Sbjct: 326 FHHHEVVGAKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 385 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 P +++L L + AL + LQ + + L G+ + Sbjct: 386 PLLERLHKLTRSDCTTRNKRKATALSRAYDGLEARIAQLQEQEQLDSIRPD---LDGNQI 442 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + G+ PG VG H + + + + ++ L++ Sbjct: 443 MGILGVRPGPVVGKAYQHLLELRLENG-PMEHDEAVAALKEW 483 >gi|16801085|ref|NP_471353.1| tRNA CCA-pyrophosphorylase [Listeria innocua Clip11262] gi|73619792|sp|Q92AA3|CCA_LISIN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|16414520|emb|CAC97249.1| cca [Listeria innocua Clip11262] Length = 393 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 97/401 (24%), Positives = 174/401 (43%), Gaps = 27/401 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N + D+DIAT+ P+ V IF T T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRPISDVDIATSAFPEEVKEIFQST----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + K+ +++TT R++ D R +V F R + D LRRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLLRRDFTMNAIAMDEN 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K+ D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FKLHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFQLDKETETALTN 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ S ERI E K+++ + AI + + + + S ++E Sbjct: 183 QIALLQHTSVERITVEWIKMIKGQAVKRAIDLLLKVE-METYLPGFK----GEKSALMEF 237 Query: 253 EQ-VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 +E + ++ L+ +I + K + LP + + + N K + Sbjct: 238 ASWNWEKRTTETAIWLGLVIAVKPSNITAFLKAWKLPNKTIQLVNKAYEAALNMKETWLT 297 Query: 312 EIKKLFYLYGDKVMIAKLKIFLAL-HYNNLTHQ--DTCFILQVLSDIIHWKKPLFPLTGD 368 E ++ A+ +FL + NN+ Q + + + K +TG Sbjct: 298 E----------ELYHAQEAVFLLVNEINNIRGQSDKEDELKKAYELLPIHSKKDLAITGA 347 Query: 369 DVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 D++K+ G G V L + + + + + L Sbjct: 348 DLLKWTGENAGPWVKETLDKVECQVLLGKINNEKNQIKRWL 388 >gi|323489708|ref|ZP_08094935.1| CCA-adding enzyme [Planococcus donghaensis MPA1U2] gi|323396839|gb|EGA89658.1| CCA-adding enzyme [Planococcus donghaensis MPA1U2] Length = 377 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 168/391 (42%), Gaps = 34/391 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I ++ L ++ IVGGAVRD L+ + DID+AT+ LP +V +F++T + T Sbjct: 4 AIKVIHTLKAAGFEAYIVGGAVRDLLLGKAPHDIDVATSALPQQVKALFART----VDTG 59 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++TT R++ +D R V F + D RRDFTINA+ + Sbjct: 60 IDHGTVLVLLDGEGIEVTTFRTESSYSDNRRPDSVEFVLSLEEDLRRRDFTINAMAMTED 119 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID GG DL+N+ I+ +GD R ED LR+LR RF + ID L++ + Sbjct: 120 LDIIDPFGGKEDLKNKVIRAVGDPDERFEEDALRMLRAIRFSGQL-DFIIDMKTLLSIRR 178 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + ++ ++ ER+ SEI+K+ ++ ++ + + + +D + + Sbjct: 179 HARLIRFIAVERLKSEIDKIFVNPCMQKSMAYLKDS-VLTKFLPVGGLFEVDWIPYQPDG 237 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + W + Q K+ + K + + + + L+ + Sbjct: 238 KPTYGWFY---------LLHQQKRQFADI-KDYRFSNGEKKLI----EKSLELTALNTWD 283 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 FY Y + + ++ + + + + + G D+++ Sbjct: 284 QW-TFYKYTLEQLEMASRV----------TDKRENLAAIKRQLPIQSRSELAVDGWDLLE 332 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + G G + + ++ + + +E Sbjct: 333 WSGAKSGPWLKVWIEKIERLIVYGILKNDKE 363 >gi|157964083|ref|YP_001498907.1| Poly(A) polymerase [Rickettsia massiliae MTU5] gi|157843859|gb|ABV84360.1| Poly(A) polymerase [Rickettsia massiliae MTU5] Length = 418 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 132/427 (30%), Positives = 204/427 (47%), Gaps = 61/427 (14%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ-------------------------- 46 ILSLLN+ ++ ++GG VRD+L+ N + + Sbjct: 18 KILSLLNEKG-QARLIGGCVRDTLLDLLHNKTNKEEFAGSTYKLPLEASYPRDRLEKGSY 76 Query: 47 DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK 106 DIDIAT + P V I S + K IPT + +GTI + F+ITTLR D+ +GR+AK Sbjct: 77 DIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNEKFEITTLRKDIECNGRHAK 136 Query: 107 VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 V+FT D+ D+ RRDFTINAL + ++ DY G DL+ + FIG+A RI EDYL Sbjct: 137 VIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQEKVVFIGEALDRIKEDYL 196 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 RILRFFRF ++Y + +D A K GLK LS ERI SE++K++ +K + M Sbjct: 197 RILRFFRFSSYYANQ-LDDGNFKACKALKDGLKTLSRERIKSEMDKIIVSKRAAQILKAM 255 Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285 + GI + IF +Q + EQ ++K++ + R+ +L+ Q K L + + Sbjct: 256 FEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRYALLLYCQ-KDFNLKVFLDW 307 Query: 286 SLPREIRYFLISFFN----CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 + ++S N FN K + + YL ++ L Sbjct: 308 KFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAASII------------GKLN 355 Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 H + ++ +P F + G+D++ I K++G L + K WI F+ S+ Sbjct: 356 HSQVKEFILKYDALL---RPKFQVNGNDLLNMNIEK-KEIGIKLEYLKNFWIEQDFKPSK 411 Query: 402 EDLHHLL 408 +L L Sbjct: 412 LELLEKL 418 >gi|310821276|ref|YP_003953634.1| tRNA nucleotidyltransferase/poly(a) polymerase family protein [Stigmatella aurantiaca DW4/3-1] gi|309394348|gb|ADO71807.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Stigmatella aurantiaca DW4/3-1] Length = 423 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 99/422 (23%), Positives = 175/422 (41%), Gaps = 20/422 (4%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M H+ ++++L L + + +VGG VRD L ++ +D D+A++ LP V Sbjct: 1 MTLEPLHRADIPRPILDVLHRLRELGFAAFLVGGCVRDILRGVAPKDFDVASSALPQEVQ 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSL 118 F KVIPT I +GT+ ++ + ++TT RS+ DGR V F RD D Sbjct: 61 GAFK----KVIPTGIQHGTVTVVIGGNHVEVTTFRSEGDYLDGRRPSSVTFERDITQDLS 116 Query: 119 RRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINA+ D G+ ++D GG+ DL+ I+ + R ED LR +R RF A Sbjct: 117 RRDFTINAMAYDPVGQVLVDPFGGMEDLQAHLIRCVRSPLERFSEDGLRPMRAVRFAAVL 176 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++ A K ++ ER+ E KLL + + + G+ + + Sbjct: 177 G-FTLEPATREAIPPTLPIFKKVALERVREEFVKLLLSPRAELGLTLLGETGLLEVFLPE 235 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK-KSILSMAKKFSLPREIRYFLI 296 + + + + A Q +++ +R L++ + +A + P + + Sbjct: 236 LAQAGEEAVRLARAAAQAAPAEVE--IRLAALLADLVRGAQARDIALRLKFPTKAADTMA 293 Query: 297 SFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT------CFI 348 F + + P +++L G ++ L + A + + Sbjct: 294 VLVEHAFLERRTGDADPALRRLLAQVGPALLEPLLAVARARVEARQRDRLPEVLALQERL 353 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +L+ L+G D++ GI P +VG + ++ E L L Sbjct: 354 RALLAAKPPLTPKELALSGKDIMATLGIGPSPQVGEATRFLMEAVFDAPDLNESERLKDL 413 Query: 408 LR 409 LR Sbjct: 414 LR 415 >gi|296122115|ref|YP_003629893.1| tRNA adenylyltransferase [Planctomyces limnophilus DSM 3776] gi|296014455|gb|ADG67694.1| tRNA adenylyltransferase [Planctomyces limnophilus DSM 3776] Length = 420 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 95/419 (22%), Positives = 177/419 (42%), Gaps = 35/419 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I I++ L + + GG VRD L+ + +D D+AT+ P+ V ++F R K Sbjct: 8 AIEIVTTLRQAGHIALFAGGCVRDLLLGKTPKDYDVATSANPEEVQQLFGYRRTKA--VG 65 Query: 75 ISYGTIKIICRKK--------------YFDITTLRSD-LITDGRYAKVVFTRDWKADSLR 119 S+G I ++ +K ++ T R D L DGR + V + D+ R Sbjct: 66 ASFGVIMVLPARKKGEPHHKSDQPAIPPVEVATFRKDGLYVDGRRPETVTFSSPEEDAQR 125 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN ++ D V D+VGG DL++R ++ IG A R ED LR+LR RF + Sbjct: 126 RDFTINGMFFDPLTETVHDFVGGQIDLQSRQLRAIGIAADRFKEDKLRLLRAVRFNSIL- 184 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ + A + ++S ERI +E+ ++L + ++I + + G+ IF + Sbjct: 185 DFSIEFETWRAIQDLAPEICVVSHERIAAELRRMLAHPSRHSSIQTLDHAGLTGAIFGKI 244 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI-- 296 + L +++ + ++ L L +++ S+ + L + R ++ Sbjct: 245 LSATSPDLLLALQSLKTDHFETAMALWLREL----PVETLRSICSQLRLSNQERDAIVWL 300 Query: 297 -SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + + K+L +IA + + H D + + Sbjct: 301 HTMQSAWLEFSDWPVCRQKRLLAYPLVNELIASGQALASAQLLESRHVDAA-----IERL 355 Query: 356 IHWKKPL----FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 W K +TG+D++ +GI PG + IL + + + L + Sbjct: 356 QSWSKEEIDPPLQVTGEDLIHWGISPGPQFKQILEQLRDGQLEGRLTSREAAHQWLADE 414 >gi|256028296|ref|ZP_05442130.1| Poly(A) polymerase [Fusobacterium sp. D11] gi|289766225|ref|ZP_06525603.1| poly(A) polymerase [Fusobacterium sp. D11] gi|289717780|gb|EFD81792.1| poly(A) polymerase [Fusobacterium sp. D11] Length = 442 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 106/435 (24%), Positives = 187/435 (42%), Gaps = 50/435 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LN+ K IVGGA+RD L+ L +D+D AT + + + +FS+ Y T Sbjct: 14 IKILNKLNEYG-KGYIVGGAIRDILLGLKPKDVDFATNLSYETLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 S+G ++I ++I R D+ G+ KV F D + D RRDFTINA+ +Q+ + Sbjct: 71 SFGVLRIRINNIDYEIAKFREDIY--GKEKKVSFVDDIRNDLARRDFTINAMAYNQKEGI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G D+ NR I FIG+A RI+ED LR+LR FRF + ++ + + A K K Sbjct: 129 IDLYNGQKDIENRIINFIGNAEERIIEDPLRVLRSFRFMSRLN-FSLSENTIEAIKKQKD 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LK + ERI E +KLL +N N + M + G+ + I + + + Sbjct: 188 LLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLELIIPEFKATYDFNQCNPHHNLDL 247 Query: 256 FEW--------KIDSLLRFIVLISWQDKKSI----------------------LSMAKKF 285 F D LR+ L+ K + + + Sbjct: 248 FNHIINVVSKVPADLELRYSALLHDIAKPIVQTFDEKGIAHYKTHEIVGADMARDILARM 307 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYG---------DKVMIAKLKIFLAL 335 LP ++ ++ + K ++ + +L G + K + Sbjct: 308 KLPVKLIDTVVEIIKKHMVLYKDITDKKFNELLSEMGYDNLWRLIEHSIADNSSKNNEVV 367 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 N H+ + + + + + + G D+++ G GK++G I ++++ Sbjct: 368 STENDLHE---RLKRAVEKQMQVRVNDLAVNGKDLIELGFT-GKEIGEIKKELLDKYLSE 423 Query: 396 SFQLSQEDLHHLLRK 410 Q ++E++ +++ Sbjct: 424 EIQNNKEEMMEYVKE 438 >gi|297158774|gb|ADI08486.1| RNA nucleotidyltransferase [Streptomyces bingchenggensis BCW-1] Length = 496 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 89/465 (19%), Positives = 166/465 (35%), Gaps = 67/465 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 35 ADDLARRFEAAGFGLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVWEVG 94 Query: 75 ISYGTIKIICRKKY---------FDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTI 124 I++GT+ +ITT RS+ R +V + D +RRDFT+ Sbjct: 95 IAFGTVGCRKEGGNGNGSSQSFQIEITTYRSEAYDRTSRKPEVSYGDSIDEDLVRRDFTV 154 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ + + ID GL DL + ++ G +D LR++R RF A + ++ Sbjct: 155 NAMAVALPRKEFIDPHNGLEDLAAKVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFDVA 213 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + + A ++I+S+ER+ E+NKL+ A P+ + + + G+ + ++ + L Sbjct: 214 PEVIAAMKAMAGRIEIVSAERVRDELNKLILAARPVKGLRLLVDTGLADHVLPELPALRL 273 Query: 244 DQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------- 283 ++ L+ + +A + + D +LR L+ K K Sbjct: 274 ERDEHHRHKDVYEHTLTVLEQAIALEKDGPDLVLRLAALLHDIGKPKTRRFEKDGRVSFH 333 Query: 284 ---------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PE 312 K E+ + + P Sbjct: 334 HHEVVGAKMTKSRMTKLKYSNELVKEVSHLVELHLRFHGYGTGEWTDSAVRRYVRDAGPL 393 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 +++L L + AL ++ LQ + + L G++++K Sbjct: 394 LERLHKLTRSDCTTRNKRKAGALSRAYDGLEERIARLQQQEQLDAIRPD---LDGNEIMK 450 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 GI PG +VG H + + + L A Q Sbjct: 451 ILGIGPGPQVGKAYKHLLELRLEHGPMERDAAVTALQDWWAAQPQ 495 >gi|251796453|ref|YP_003011184.1| polynucleotide adenylyltransferase region [Paenibacillus sp. JDR-2] gi|247544079|gb|ACT01098.1| Polynucleotide adenylyltransferase region [Paenibacillus sp. JDR-2] Length = 417 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 102/415 (24%), Positives = 183/415 (44%), Gaps = 24/415 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L + ++ VGG VRD+ M L ++D+DIAT+ P++VM IF + IPT Sbjct: 14 AIPVLEALVQQGFEAVFVGGCVRDTAMGLPIKDVDIATSARPEQVMSIFPRC----IPTG 69 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT--DGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ ++ +++TT R++ R +V F D LRRD TINA+ + Sbjct: 70 LQHGTVTVLHDGGSYEVTTFRTESEYEKHRRPLQVEFIDRLDGDLLRRDLTINAMAMNAA 129 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ D GLNDL+NRTI+ +GDA R ED LR+LR RF + + E I A ++ Sbjct: 130 GELYDPFRGLNDLKNRTIRCVGDADARFQEDALRMLRTIRFASQF-EFTIAHTTWRALVR 188 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE---IFLDVQEISLDQLSQV 249 ++ L+ ++ ER+ +E+++++ +P A+ + + + + + ++L+QV Sbjct: 189 HRELLRHIAMERVHAELDRMIGGAHPGRALHLLAASKLLRYTGTVLP-----AAEKLAQV 243 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDK--KSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 + + D R+ L+ + K LP + ++S F Sbjct: 244 DPSYSELDKLNDPDARYAALLLAEGITLSDAEETLKALRLPTQKMNAILSVLFVQFAMNQ 303 Query: 308 LSIPEIKKLFY-----LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 L+ +L + YG++ L I + ++L H + L + Sbjct: 304 LNQQSGLRLVWTSTVLQYGEEASRRWLSIVVWNQKHHL-HDQKNLFDKWLDAMPAMTLKQ 362 Query: 363 FPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 L G + + G G +L E ++ L + A Q Sbjct: 363 LNLNGKQLAEELQRVTGNWTGLMLKRLLLEVALDKLPNEKDLLLKQAQIWNAEDQ 417 >gi|154498343|ref|ZP_02036721.1| hypothetical protein BACCAP_02332 [Bacteroides capillosus ATCC 29799] gi|150272654|gb|EDM99832.1| hypothetical protein BACCAP_02332 [Bacteroides capillosus ATCC 29799] Length = 392 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 164/394 (41%), Gaps = 21/394 (5%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 + + L ++ VGG VRD L+ + D D+ T+ +P+ V+ +F +T +PT I + Sbjct: 16 LCARLRSAGWEAYPVGGCVRDLLLGRTPGDWDVTTSAMPEEVIALFDRT----VPTGIRH 71 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++TT R++ DGR+ V F D D RRDFTINA+ G V Sbjct: 72 GTVTVLTEDGGVEVTTFRAESGYADGRHPDAVTFGGDLTGDLTRRDFTINAMALGPDGAV 131 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG DL+ R I+ +G+ R ED LR+LR RF A G +++ A + Sbjct: 132 IDPFGGQKDLQARLIRCVGEPGRRFREDALRMLRAVRFSAQLG-FAVENATAEALRDNAE 190 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LS+ERI +E+ K+L ++ P ++ G+ + L L +V Sbjct: 191 LTACLSAERIRTELEKILLSQWPERG-EGLFAWGLLAAFVGADAQPDLTTLHRVPAR--- 246 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 L R+ L + + + A++F +++R + C + + Sbjct: 247 ------PLERWAALCALLLDEGSIRSAEEF--LKDLRLDGRTVRACAAGAELVKTMPRGA 298 Query: 316 LFYLYG-DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 + + + A+ + + + + L++ L+G ++ G Sbjct: 299 AGWRHALAEHGADACTAAAAIGAAMMGGEYLRELAETLAEGSCLTVRELALSGAELAAMG 358 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G +G ++ E L LL Sbjct: 359 YR-GADIGAAQRRLLDHVLDHPEDNRPERLRELL 391 >gi|52080753|ref|YP_079544.1| tRNA CCA-pyrophosphorylase [Bacillus licheniformis ATCC 14580] gi|52786124|ref|YP_091953.1| tRNA CCA-pyrophosphorylase [Bacillus licheniformis ATCC 14580] gi|319645289|ref|ZP_07999522.1| CCA-adding enzyme [Bacillus sp. BT1B_CT2] gi|73619750|sp|Q65I54|CCA_BACLD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|52003964|gb|AAU23906.1| tRNA nucleotidyltransferase [Bacillus licheniformis ATCC 14580] gi|52348626|gb|AAU41260.1| Cca [Bacillus licheniformis ATCC 14580] gi|317393098|gb|EFV73892.1| CCA-adding enzyme [Bacillus sp. BT1B_CT2] Length = 397 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 109/399 (27%), Positives = 178/399 (44%), Gaps = 18/399 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L K ++ VGGAVRD+ MN V DIDIAT P+ + IF KT + Sbjct: 8 ALPLLRELKKHGWQAYFVGGAVRDAQMNRDVGDIDIATDASPEEIEAIFPKT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R V F + K D RRD TINA+ D++ Sbjct: 64 KEHGTIIVLFEGESYEVTTFRAELEYEDYRRPSGVQFIKSLKEDLKRRDLTINAMAMDEE 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++IDY GGL D+R R I+ +GD R ED LR+LR RF + E + + A + Sbjct: 124 GRLIDYFGGLRDIRERLIQTVGDPAERFHEDALRMLRALRFMSQL-EFELSPNTKKAICE 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + L +S+ER E KLL+ K A+ G++KE+ + L+ Sbjct: 183 NRPLLAHISTERKTVEFEKLLKGKAAGRALEAAAETGLYKEL-PGLDGKKERVLAARAFP 241 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP 311 + D FI +IS + K + LP + IR L + + +S+ Sbjct: 242 FYQLQKSADIWAAFIHMISI-NPAEAHRFLKGWKLPGKVIRQALHTAERIDQKWDAVSM- 299 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 Y G++ ++A I + + I Q + ++G D++ Sbjct: 300 ------YEAGEETLLAASAIRSLRDKQAIDEEQLAEIRQSYQALPIKSLKDLAVSGSDLL 353 Query: 372 KYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + P GK V + L ++ +N ++ + L Sbjct: 354 NFRKKPAGKWVSDDLKRIERAVLNGELANQKKAIEEWLD 392 >gi|302531336|ref|ZP_07283678.1| tRNA adenylyltransferase [Streptomyces sp. AA4] gi|302440231|gb|EFL12047.1| tRNA adenylyltransferase [Streptomyces sp. AA4] Length = 481 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 92/456 (20%), Positives = 173/456 (37%), Gaps = 58/456 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ D+D T PDRV++I S+ V Sbjct: 21 ADELAERFARAGHSLYLVGGSVRDALLGRLSSDLDFTTDARPDRVLQIVSEWGDAVWDVG 80 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I++GT+ + +ITT R+D GR +V F + D LRRDFT+NA+ D G Sbjct: 81 IAFGTVGVTKNGTTLEITTFRADSYDRVGRNPEVTFGDTIEGDLLRRDFTVNAMAIDLVG 140 Query: 134 K-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K ID G++ LR + + +D LR++R RF A G + A Sbjct: 141 KTFIDPHDGMDALRLKVLDTPALPQESFADDPLRMMRAARFSAQLG-FTAAPRVVEAMTS 199 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ------------- 239 + + +++ER+ +E++KL+ A +P + + + G+ + ++ Sbjct: 200 MAEEIDRITAERVQTELSKLMLAPDPRPGLELLVDTGLADRVLPELPGMRLAIDEHHQHK 259 Query: 240 ---EISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSM------------- 281 + SL L+Q I E+ E + D +LR L+ K + Sbjct: 260 DVYQHSLTVLAQAIALEKSHEPTSEPDLVLRLAALLHDIGKPATREFTPGGGVSFHHHEV 319 Query: 282 ---------AKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKL 329 + +EI + + + Y+ ++ +L Sbjct: 320 VGARMARKRLRALKYSKEIVEQVSQLVFLHLRFHGYGGGEWTDSAVRRYVTDAGDLLTRL 379 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 + + + D+ + L G+++++ G+PPG Sbjct: 380 HKLVRADSTTRNKRKAAALQATYDDLEARIERIKEQEDLDRVRPDLDGNEIMRLLGLPPG 439 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +VG K+ ++ L ++ L+K + Sbjct: 440 PQVGRAWKFLKELRLDRG-PLDHDEAVAELKKWAKT 474 >gi|323464448|gb|ADX76601.1| tRNA CCA-pyrophosphorylase [Staphylococcus pseudintermedius ED99] Length = 400 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 91/408 (22%), Positives = 168/408 (41%), Gaps = 27/408 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL L + ++ VGG+VRD +MN + D+DI T PD + +F T IP Sbjct: 9 AKPILERLIQHGYEAYFVGGSVRDFIMNRPIHDVDITTNATPDEIESLFEHT----IPIG 64 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ + +++TT R++ D R +V F RD D RRDFT+NA+ + Sbjct: 65 KEHGTINVVWSHENYEVTTFRAEAEYVDHRRPTEVYFVRDLYQDVERRDFTMNAIAMNIN 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + ID+ G D+ R I+ +GDA R ED LRILR RF + G I+ A Sbjct: 125 YERIDHFEGERDIEQRIIRTVGDAKTRFDEDALRILRGLRFKSQLG-FTIEEATFEAMAH 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ LS ERI +E+ L++ + +++ I + Sbjct: 184 QMSDLEYLSIERIMNELTLLIKGTFVAKTFPILEALQLWRYI-------------PYFKD 230 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP- 311 V KI++ + ++ ++ K L + + + +T+ Sbjct: 231 VDVAAIKINAPIDMEAFLAILSYRTNYQAFKSLKLSNAQVRTIQTLISAIQVAQTIDTKV 290 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ-----DTCFILQVLSDIIHWKKPLFPLT 366 ++++ Y +G +V + ++ L N + + + V D+ + + Sbjct: 291 QLQQFTYDFGLEVALKINELRPILEDNQIDLPSPIIFSSASLQAVWEDLPIQSREDLAID 350 Query: 367 GDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 G ++ + + G + ++L + I E + +R + Sbjct: 351 GKWLMQAFQLKGGPWIKDVLRQVECAVIQRQVNNQTEAIIEWVRTHVK 398 >gi|315303843|ref|ZP_07874330.1| CCA-adding enzyme [Listeria ivanovii FSL F6-596] gi|313627786|gb|EFR96432.1| CCA-adding enzyme [Listeria ivanovii FSL F6-596] Length = 393 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 169/399 (42%), Gaps = 23/399 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF+ T T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKTIFTST----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +Y+++TT R++ D R +V F R + D LRRDFT+NA+ D Sbjct: 64 IAHGTVTVRENNEYYEVTTFRTEGAYEDYRRPSEVTFIRSLEEDLLRRDFTMNAIAMDGD 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G +R + I+ +G A R ED LR++R RF + + +++ + A Sbjct: 124 FDLHDPFLGQISIRKKEIRAVGKASERFHEDALRMMRAIRFLSQL-DFHLEKETEAALQN 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQVI 250 LK S ERI E K+++ A+ + + + + +L + Sbjct: 183 QIGLLKHTSVERITVEWVKMVKGSAIKRAMELLLKVE-MESFLPGLKGKAAALSNFASWN 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 ++ E I ++ L+ ++ + K + LP + + + +KT Sbjct: 242 WDKRETEKAI-----WLGLVVAVKPNNVTAFLKAWKLPNKTVQLVNKTYQYALTKKTDWS 296 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E Y G + + L+ + +V + K +TG D+ Sbjct: 297 EEE---LYHAG----VEAFSLVNELNTIRFGENQLERLAKVYQSLPIHSKKDLAITGADL 349 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +K+ G G + L ++ I + + + L Sbjct: 350 LKWSGEKAGPWMKETLDKIERAVILKEMKNEKNAIRRWL 388 >gi|327440755|dbj|BAK17120.1| tRNA nucleotidyltransferase/poly(A) polymerase [Solibacillus silvestris StLB046] Length = 395 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 90/410 (21%), Positives = 174/410 (42%), Gaps = 35/410 (8%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 ++ +W ++ + ++ IVGGAVRD + D+DIAT+ +P+ + IF Sbjct: 7 MIPQQW---QAAKEVIKKIEHAGFEAFIVGGAVRDYYLKKENNDVDIATSAMPEEIQTIF 63 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRD 121 S+T I I++GT+ ++ + ++TT R++ +D R V F R+ + D RRD Sbjct: 64 SQT----IDVGIAHGTVIVLDCGEPIEVTTYRTESTYSDHRRPDTVEFVRNLQEDLKRRD 119 Query: 122 FTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 FT+NA+ Q G+ IDY G + ++ I +G+ R ED LR+LR RF A + Sbjct: 120 FTMNAMALSQSGEYIDYYNGRQHIDSKVICAVGEPDQRFEEDALRMLRAVRFAAQL-HFS 178 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I+ + A K ++ ++ ERI E++K+ + + I +M + + + Sbjct: 179 IEENTFEAIRKKAASIEYVAIERIQVELSKIFISAHASFGIDYMEKTTLGDYLHGNFTAS 238 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF---LISF 298 + + ++ W + L++ D LS+ K+ + + F +++ Sbjct: 239 N---WTHYYSEDRQVGWA------YFCLVNGSD----LSLLTKYRCSNKDKLFVKTVLAA 285 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + N +L L L L Y L + +Q ++++ Sbjct: 286 YESLRNGMSLVDLLSYDTIVLKTSFQFTIWQNCKLELSYEELVARKNGLPIQHVNELA-- 343 Query: 359 KKPLFPLTGDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +TG D++ + G + L + +N Q ++ L Sbjct: 344 ------ITGKDLLDWSSKKRGSWIKQTLNAAVEAVLNEEVQNDKQQLKEW 387 >gi|329767023|ref|ZP_08258551.1| hypothetical protein HMPREF0428_00248 [Gemella haemolysans M341] gi|328837748|gb|EGF87373.1| hypothetical protein HMPREF0428_00248 [Gemella haemolysans M341] Length = 386 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 110/400 (27%), Positives = 186/400 (46%), Gaps = 33/400 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 INIL N+ ++ VGG VRD L+N DIDI T LP+ V +IF K+ I T Sbjct: 13 AINILEKFNEAGYEAYFVGGCVRDYLLNDEFSDIDITTNALPEEVKQIFRKS----IDTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ + F++TT R++ D R + V F D K D RRDFTINA+ D Sbjct: 69 IQHGTVTILVDEDSFEVTTFRTEDDYIDHRTPEKVEFVSDLKEDLDRRDFTINAMALDSN 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ DY G DLRN+ IK + + + R ED LR+LR FRF + G I+ + L A Sbjct: 129 GKLYDYHCGERDLRNKVIKTVNNPNERFFEDALRMLRSFRFSSKLG-FEIEENTLKAIKN 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + +K +S ERI +E KLL + ++ + + + I LD++S++I Sbjct: 188 NAELIKFVSIERIVNEFRKLLTGRGNKRSLELLLDSKLNNYI------PFLDEISKII-- 239 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 ++ + + + ++S + S + K+ L + + + N+ S Sbjct: 240 ----DFSNYTFCQSLYILSKINDISFEKL-KELKLSNKEIKQIKIY--EKINEDFSSNIP 292 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 ++ + Y Y + F+A + N +D I + +T +++ Sbjct: 293 LEIILYNYDVNDVT-----FIASYSNYCDKEDIEKIK-----LPIKSFNDIAITSMEIIS 342 Query: 373 YGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P G + I+ +++ I +++D+ L K+ Sbjct: 343 IIDKPAGPWIKEIIKKLEEDIILYKIDNTKKDILDFLMKI 382 >gi|320009733|gb|ADW04583.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces flavogriseus ATCC 33331] Length = 481 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 87/450 (19%), Positives = 168/450 (37%), Gaps = 59/450 (13%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 + +VGG+VRD+L+ D+D T P+ V++I V I++GT+ Sbjct: 36 RFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVGIAFGTV 95 Query: 81 KIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDY 138 ++TT RS+ R +V + + D +RRDFT+NA+ + ID Sbjct: 96 GSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVALPHKEFIDP 155 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GGL+DL R ++ G +D LR+LR RF A + + D + A ++ Sbjct: 156 HGGLDDLAQRVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPDVVKAMTDMAGRIE 214 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------------Q 245 I+S+ERI E+NKLL + +P + + + G+ + ++ + L+ Sbjct: 215 IVSAERIREELNKLLLSGHPRKGLGLLVDTGLAGHVLPELPALRLESDEHHRHKDVYEHS 274 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------------- 283 L+ + +A + E D +LR L+ K K Sbjct: 275 LTVLEQAIDLEEDGPDLVLRLAALLHDVGKPRTRRFEKDGRVSFHHHEVVGAKMTKKRMA 334 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYGDKVMIA 327 + ++ + + P + +L L Sbjct: 335 ELKYSNDMVKDVSKLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLDRLHKLTRSDCTTR 394 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILV 386 + AL ++ LQ ++ + L G+++++ + PG +G Sbjct: 395 NKRKANALSRTYDGLEERIAQLQEQEELEAIRPD---LDGNEIMRILDVGPGPVIGKAYA 451 Query: 387 HCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + + + + +E L++ A+ + Sbjct: 452 FLLELRLENG-PMEREAAVAALKEWWAAQE 480 >gi|328883719|emb|CCA56958.1| tRNA nucleotidyltransferase [Streptomyces venezuelae ATCC 10712] Length = 474 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 87/462 (18%), Positives = 169/462 (36%), Gaps = 67/462 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 16 ADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVG 75 Query: 75 ISYGTIKIICRKK--------YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 I++GT+ + + ++TT RS+ R +V + D +RRDFT+N Sbjct: 76 IAFGTVGCQKQGRVGDADQSFQIEVTTYRSEAYDRTSRKPEVSYGDSIDQDLVRRDFTVN 135 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + ID GGL DL R ++ G +D LR++R RF A + + Sbjct: 136 AMAVALPEKEFIDPYGGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAP 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + + A + ++I+S+ER+ E+NKLL + +P + + + G+ + + ++ + L+ Sbjct: 195 EVVTAMKEMSGRIEIVSAERVREELNKLLLSAHPRKGLGLLVDTGLAEHVLPELPALRLE 254 Query: 245 -------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK-------- 283 L+ + +A + E D +LR L+ K K Sbjct: 255 SDEHHRHKDVYEHSLTVLDQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFEKDGRVSFHH 314 Query: 284 --------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEI 313 E+ + + P + Sbjct: 315 HEVVGAKMTKKRMTALKYSNEMIKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPML 374 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK- 372 +L L + AL +D LQ ++ + L G+ + + Sbjct: 375 SRLHKLTRSDCTTRNKRKASALSRAYDGLEDRIAQLQEQEELDAIRPD---LDGNQIQEI 431 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 GI PG +G + + + + + L++ A+ Sbjct: 432 LGIGPGPAIGQAYKFLLELRLENG-PMEHDQAVSALKEWWAA 472 >gi|300791145|ref|YP_003771436.1| poly(A) polymerase [Amycolatopsis mediterranei U32] gi|299800659|gb|ADJ51034.1| poly(A) polymerase [Amycolatopsis mediterranei U32] Length = 478 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 95/457 (20%), Positives = 169/457 (36%), Gaps = 58/457 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+L+ D+D T PDRV++I S V Sbjct: 19 AEELAERFARAGHRLYLVGGSVRDALLGRRSGDLDFTTDARPDRVLKIVSGWGDAVWDVG 78 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ + + +ITT R+D GR +V F + D LRRDFT+NA+ D Sbjct: 79 IAFGTVGVTKKGMQLEITTFRADSYDRVGRNPEVTFGDSIEGDLLRRDFTVNAMAVDLAS 138 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ID GL+ LR R + +D LR+LR RF A + + A Sbjct: 139 KTFIDPHDGLSALRERVLDTPATPQESFADDPLRMLRAARFAAQL-DFAAAPRVVDAMTS 197 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ------------- 239 + + +++ER+ +E++KLL A +P + + + G+ + +V Sbjct: 198 MAEEIDRITAERVQAELSKLLLAADPRPGLELLVDTGLADRVLPEVAGMRLAIDEHHQHK 257 Query: 240 ---EISLDQLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSM------------- 281 + SL L+Q I+ E E + D +LR L+ K + Sbjct: 258 DVYQHSLTVLAQAIDLESSHEPTSEPDLILRLAALLHDVGKPATREFQEGGGVSFHHHEV 317 Query: 282 ---------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKL 329 + +EI + + E Y+ ++ +L Sbjct: 318 VGARMARKRLRALKFSKEIVDDVSQLVFLHLRFHGYGKGEWTDSAVRRYVTDAGPLLTRL 377 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 + + + D+ + L G+ ++ G+ PG Sbjct: 378 HKLVRADCTTRNRRKAAVLQATYDDLEARIAALKAKEDLDRVRPDLNGEQIMALLGLKPG 437 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 VG K+ ++ L ++ L+K A + Sbjct: 438 PDVGKAWKFLKELRLDRG-PLDHDEAVAELKKWAAEN 473 >gi|254391445|ref|ZP_05006647.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294813723|ref|ZP_06772366.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326442144|ref|ZP_08216878.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197705134|gb|EDY50946.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294326322|gb|EFG07965.1| RNA nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 482 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 167/449 (37%), Gaps = 59/449 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + + +VGG+VRD+L+ D+D T P+ V+RI + Sbjct: 30 ADDLARRFQEAGFRLALVGGSVRDALLGRLGNDLDFTTDARPEDVLRIMRPWADSIWDVG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 90 IAFGTVGSQKGGYQIEVTTYRSEAYDRTSRKPEVAYGDSIEDDLVRRDFTVNAMAVALPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + ID GL DL + ++ G +D LR++R RF A + ++ + + A Sbjct: 150 KEFIDPHNGLEDLAAQVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFDVAPEVVEAMKD 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 ++I+S+ER+ E+NKL+ + +P + + + G+ ++ ++ + L+ Sbjct: 209 MAGRIEIVSAERVREELNKLILSAHPRKGLALLVDSGLAAQVLPELPALRLESDEHHRHK 268 Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------------SM 281 L+ + +A + D +LR L+ K M Sbjct: 269 DVYEHSLTVLEQAIALEGNGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHHHEVVGAKM 328 Query: 282 AKK----FSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 KK E+ + + P + +L L Sbjct: 329 TKKRMTALKYSNELVKDVSRLVELHLRFHGYGSGEWTDSAVRRYVRDGGPLLDRLHKLTR 388 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL + L+ ++ + L G+ + K G+ PG Sbjct: 389 SDCTTRNKRKAAALSRTYDGLEVRIAELKEQEELDAIRPD---LDGNQIQKILGVGPGPV 445 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +G H + + + + +E LR Sbjct: 446 IGKAYAHLLELRLENG-PMEEEAAIAALR 473 >gi|87311632|ref|ZP_01093749.1| poly A polymerase [Blastopirellula marina DSM 3645] gi|87285635|gb|EAQ77552.1| poly A polymerase [Blastopirellula marina DSM 3645] Length = 426 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 96/411 (23%), Positives = 185/411 (45%), Gaps = 27/411 (6%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + ++ L ++ GG VRD L+ QD D+AT P+RV +IF + R + Sbjct: 14 LEVVRTLKTHGHQALWAGGCVRDMLLGRDPQDFDVATDAPPERVRQIFGEKR--TLAIGA 71 Query: 76 SYGTIKIICRKK--YFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 S+G I + KK ++ T R D+ +DGR V + D+ RRDFTIN ++ D Sbjct: 72 SFGVITVQGGKKRGQIEVATFRQDVGYSDGRRPDEVRFTSAEEDAKRRDFTINGIFYDPD 131 Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + D+VGG DLR+R ++ IGD + R ED LR+LR RF + + + +++ + + A Sbjct: 132 ASAIYDFVGGQIDLRDRLVRAIGDPNQRFAEDKLRMLRAIRFSSTF-QFDLEMNTMRAIQ 190 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + + + ++S+ER+ E+ K+L + + A+V + + +F + +V + +D + E Sbjct: 191 RHSRNIAVVSAERVAVEMRKMLCSPRRVEAVVLLRDSWLFPTVLPEVITV-IDHAPRWTE 249 Query: 252 AEQVFEW--KIDSLLRFIVLISWQDKKSILS------------MAKKFSLPREIRY---F 294 + ++ D L+ + + + S + +++ L + + Sbjct: 250 TLRTLQFLSGNDFATALAALLRFSTARELASGDPRKPIPLLVEVCRRWKLTNDETRDVQW 309 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 L+ + K S P ++++ + + +L H D F+ + L Sbjct: 310 LLRQVHVLQTAKDQSWPRLQRVLVDPRIEKLADLASAIAKARMESLEHLD--FVRERLGW 367 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 + P TGDD+++ G+ PG+ +L + + E L Sbjct: 368 AVERLNPSPVATGDDLIRAGLKPGRHFQGLLESIRDAQLLGEIATLDEALE 418 >gi|269129150|ref|YP_003302520.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermomonospora curvata DSM 43183] gi|268314108|gb|ACZ00483.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermomonospora curvata DSM 43183] Length = 490 Score = 265 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 165/449 (36%), Gaps = 54/449 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +VGG VRD+L+ +D+D+ T P++V+++ + Sbjct: 30 PAADELGRRFAAAGHELALVGGPVRDALLGRPGKDVDLTTDATPEQVLQLVEGWADAIWT 89 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I +GT+ + +ITT RS+ R +V + + D RRDF +NA+ A Sbjct: 90 IGIEFGTVGLRKGDLQLEITTYRSESYDPKSRKPEVSYGKSLTEDLARRDFAVNAMAARL 149 Query: 132 QG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G + +D GGL DLR +T++ G +D LR++R RF A G + + + A Sbjct: 150 PGHEFVDPFGGLGDLRRKTLRTPGRPEDSFNDDPLRMMRAARFAAQLG-FTVAPEVVAAM 208 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++I+S+ERI E++KL+ A P + + + G+ + + ++ ++ L ++ + Sbjct: 209 RDMAGRIEIVSAERIRDELSKLICAPRPRAGLTLLVDTGLAEHVLPELPKLRL-EIDEHH 267 Query: 251 EAEQVFEWK--------------IDSLLRFIVLISWQDKKSILSM--------------- 281 + V+E D +LR L+ K S Sbjct: 268 RHKDVYEHTLIVLEQAIAQEEDGPDLVLRLAALLHDIGKPKTRSFEPGGRVTFHHHEVVG 327 Query: 282 -------AKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKI 331 P+++ + + + Y+ ++ +L Sbjct: 328 AKMARHRLSALRYPKDVVADVSRLVELHLRFHGYGDGQWTDSAVRRYVRDAGHLLNRLHK 387 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + + D+ K L G+++ + GI PG Sbjct: 388 LTRADCTTRNRRKAERLRRAYDDLEARIARLAAEEELAKIRPELDGNEIQQILGIKPGPL 447 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409 VG ++ + LLR Sbjct: 448 VGKAYKFLLDLRLDRGMIGKEAATAELLR 476 >gi|297200922|ref|ZP_06918319.1| tRNA adenylyltransferase [Streptomyces sviceus ATCC 29083] gi|197716906|gb|EDY60940.1| tRNA adenylyltransferase [Streptomyces sviceus ATCC 29083] Length = 480 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 87/454 (19%), Positives = 165/454 (36%), Gaps = 58/454 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P V++I V Sbjct: 30 ADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVWEVG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 90 IAFGTVGAQKDGYLIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 K ID GGL+DL R ++ G +D LR++R RF A + + + + A + Sbjct: 150 KKFIDPHGGLDDLAARVLRTPGTPEASFSDDPLRMMRAARFAAQL-DFEVAPEVVTAMTE 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 L+I+S+ER+ E+NKL+ + +P + + + G+ + + ++ + L+ Sbjct: 209 MSGRLEIVSAERVRDELNKLILSAHPRKGLTLLVDTGLAEHVLPELPALRLESDEHHRHK 268 Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 L + +A + + D LR L+ K K Sbjct: 269 DVYEHTLIVLEQAIALEKEGPDLTLRLSALLHDIGKPRTRRFEKDGRVSFHHHEVVGAKM 328 Query: 284 ------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 ++ + + P + +L L Sbjct: 329 TKKRMTALKYSNDLVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHKLTR 388 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL ++ LQ ++ + L G+ +++ G+ PG Sbjct: 389 SDCTTRNKRKAAALSRAYDGLEERISQLQEQEELDSIRPD---LDGNQIMEILGVGPGPA 445 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 VG H + + + E + L A Sbjct: 446 VGRAYKHMLELRLENGPMGYDEAVAALKEWWAAQ 479 >gi|229822936|ref|ZP_04449006.1| hypothetical protein GCWU000282_00228 [Catonella morbi ATCC 51271] gi|229787749|gb|EEP23863.1| hypothetical protein GCWU000282_00228 [Catonella morbi ATCC 51271] Length = 416 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 101/411 (24%), Positives = 186/411 (45%), Gaps = 30/411 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L + ++ VGG VRD+L+ + DIDIAT+ PD + IF T Sbjct: 15 AMPLLEAIESHGYEAYFVGGCVRDALLGKEIHDIDIATSATPDEIQGIFPVT----FDVG 70 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI ++ +K+ ++ITT R++ +D R +V F R+ + D+LRRDFTINAL D+ Sbjct: 71 KKHGTIVVVYKKENYEITTFRTEGTYSDRRRPDQVNFVRNLREDTLRRDFTINALALDRL 130 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+V DY GG DL+ I+ +G A R ED LR++R RF + G I+S A + Sbjct: 131 GRVYDYHGGEQDLQAGIIRAVGTAMERFDEDALRMMRALRFASQLG-FEIESQTFEAIGQ 189 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +S ERI E++KL++ + + G+ + ++Q+ + Sbjct: 190 LAPNLSYVSIERIRIELSKLMQGDYLGTSYKALTESGLCAYLL------GMEQVDALSVW 243 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLISFFNCNFNQKTLSIP 311 +QV+E + ++ ++ ++ K L + R FL + + N K +S Sbjct: 244 QQVYETLAAQI---AAGLARDERLVWWALVKALGLDSTQARAFLRDWKHSNPFIKDVS-- 298 Query: 312 EIKKLFYLYGDKVMIAK---------LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 ++ +L + + A L I+ ++ + + Q + + + Sbjct: 299 DLLELDQAFASGPLDAWQLYQMPTHVLAIYETYAFHQGWLSQSNQLSQAKAQLPLASRSD 358 Query: 363 FPLTGDDVVK-YGIPPG-KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + G V++ G+ G +G +L+ +++ + L + L Sbjct: 359 LAINGQKVMEALGLSRGNAGLGRLLLELERQVVMGDLPNEPAVLLAQAQAL 409 >gi|116873340|ref|YP_850121.1| tRNA CCA-pyrophosphorylase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461247|sp|A0AK10|CCA_LISW6 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|116742218|emb|CAK21342.1| polyA polymerase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 393 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 96/401 (23%), Positives = 174/401 (43%), Gaps = 27/401 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+ ++ D+DIAT+ P+ V IF T T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLCRTISDVDIATSAFPEEVKEIFPST----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + K+ +++TT R++ D R +V F R K D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENKECYEVTTFRTEGTYEDFRRPSEVTFIRSLKEDLQRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++ D G ++N+ IK +G A R ED LR++R RF + + ++D + A K Sbjct: 124 FELHDPFFGQLAIQNKEIKAVGKASERFQEDALRMMRAVRFLSQL-DFHLDKETENALQK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ S ERI E KL++ AI + + ++ L + Sbjct: 183 NIALLQHTSVERITVEWVKLMKGPAVKRAINVLLK------VEMETYLPGLKGEKSALIP 236 Query: 253 EQVFEWKIDSL--LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 +EW + + ++ L K ++ S K + LP + + + N K Sbjct: 237 FASWEWDKRTTENVIWLGLAVAVKKANVTSFLKAWKLPNKTIQLVNQAYQYALNGKEYW- 295 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD--TCFILQVLSDIIHWKKPLFPLTGD 368 K+ Y G +V L N + Q+ + Q+ + K +TG Sbjct: 296 --QKEELYYAGKEVF------SLVNEINVIRGQENKQNELDQLYETLPIHSKKDLAITGG 347 Query: 369 DVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 D++++ G + + L + ++ + ++ + L Sbjct: 348 DLLEWADKSAGPWIKDTLDKVESAVLSQAINNDKKHIKRWL 388 >gi|254384792|ref|ZP_05000129.1| RNA nucleotidyltransferase [Streptomyces sp. Mg1] gi|194343674|gb|EDX24640.1| RNA nucleotidyltransferase [Streptomyces sp. Mg1] Length = 480 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 87/454 (19%), Positives = 167/454 (36%), Gaps = 59/454 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 30 ADELGRRFQEAGFRLALVGGSVRDALLGRLGNDLDFTTDAHPEDVLKIVRPWADSVWDVG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 90 IAFGTVGAHKLGFQIEVTTYRSESYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GGL DL+ ++ G +D LR+LR RF A + + + + A Sbjct: 150 KEFVDPHGGLEDLQAGILRTPGTPEDSFSDDPLRMLRAARFAAQL-DFEVAPEVVAAMTA 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 ++I+S+ER+ E+NKLL + NP + + + G+ + ++ + L+ Sbjct: 209 MADRIEIVSAERVQGELNKLLLSPNPRKGLGLLVDSGLADHVLPELPALRLESDEHHRHK 268 Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------------SM 281 L + +A + E D +LR L+ K M Sbjct: 269 DVYDHSLIVLEQAIALEEDGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHHHEVVGAKM 328 Query: 282 AKK----FSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 KK ++ + + P +++L L Sbjct: 329 TKKRMTALKYSNDMIKDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHKLTR 388 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL T+ ++ L + L G+++ + G+ PG Sbjct: 389 SDCTTRNKRKANALSR---TYDGLEERIEQLKEQEQLDAIRPDLDGNEIQQVLGVGPGPV 445 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +G + + + E L++ A+ Sbjct: 446 IGKAYAFLLDLRLENG-PMGHEAAVTALKEWWAA 478 >gi|260495614|ref|ZP_05815738.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_33] gi|260196797|gb|EEW94320.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_33] Length = 442 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 108/435 (24%), Positives = 186/435 (42%), Gaps = 50/435 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D AT + + + +FS+ Y T Sbjct: 14 IKILNKLNKCG-KGYIVGGAIRDILLELKPKDVDFATNLSYETLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 S+G ++I ++I R D+ G+ KV F D K D RRDFTINA+ +Q+ + Sbjct: 71 SFGVLRIRINNIDYEIAKFREDIY--GKEKKVSFVDDIKNDLARRDFTINAMAYNQKEGI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G D+ NR I FIG+A RI+ED LR+LR FRF + + ++ + + A K K Sbjct: 129 IDLYNGQKDIENRIINFIGNAEERIIEDPLRVLRAFRFMSRL-DFSLSENTIEAIKKQKD 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 LK + ERI E +KLL +N N + M + G+ + I + + + Sbjct: 188 LLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLELIIPEFKATYDFNQCNPHHNLDL 247 Query: 256 FEW--------KIDSLLRFIVLISWQDKKSI----------------------LSMAKKF 285 F D LR+ L+ K + + + Sbjct: 248 FNHIINVVSKVPADLELRYSALLHDIAKPVVQTFDEEGIAHYKTHEIVGADMARDILTRL 307 Query: 286 SLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 LP ++ + + K ++ + KL G ++ +N + D Sbjct: 308 KLPVKLIDTVEEIIKKHMVLYKDITDKKFNKLLSEMG---YDNLWRLIEHSIADNSSKND 364 Query: 345 T---------CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + + + + + G D+++ G GK++G I ++++ Sbjct: 365 EVVSTENDLHERLKRAVEKQMQVTVNDLAINGKDLIELGFN-GKEIGEIKKELLDKYLSE 423 Query: 396 SFQLSQEDLHHLLRK 410 Q ++E++ +++ Sbjct: 424 EIQNNKEEMLEYVKE 438 >gi|15639262|ref|NP_218711.1| polynucleotide adenylyltransferase (pcnA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025504|ref|YP_001933276.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum SS14] gi|3322543|gb|AAC65258.1| polynucleotide adenylyltransferase (pcnA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018079|gb|ACD70697.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum SS14] Length = 478 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 100/468 (21%), Positives = 167/468 (35%), Gaps = 75/468 (16%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + +VGGAVRD L+N S D D+AT P+RV +F +T +PT Sbjct: 10 LREVSERFIRAGFCIYVVGGAVRDFLLNRSAHDWDLATDAPPERVRMLFRRT----VPTG 65 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-Q 131 I +GT+ I+ R + TT R + +D R+ V F + D RRDFT+NA A Sbjct: 66 IEHGTVTILFRGHSIECTTFRVESDYSDRRHPDSVCFAARIEDDLARRDFTVNAFAAALP 125 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ID GG DLRN I +GDAH R ED LR LR RF A +I++ A I Sbjct: 126 SGEIIDVCGGYADLRNGLICSVGDAHARFSEDALRPLRAVRFAAQL-SFSIEARTREAII 184 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + +S ER+ E++K+L P A+ M G+ +F + ++ + E Sbjct: 185 ALRAHTARISRERVRDELSKMLCTPRPSIALRLMEETGLLHTLFPALAQVCGRNEGEEKE 244 Query: 252 AEQVFEWKIDS----------------------LLRFIVLISWQDK-------------- 275 + + +R L+ Sbjct: 245 TQDSLQVSPQQRRDARTFAACAFAACDRVPAELAVRLAALLFPLAHYRTLPASGTGAALF 304 Query: 276 ------KSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLF----------- 317 + + P + + + F + F Sbjct: 305 ICPPALAEARELLRGLKYPNYLTAQVCHLVAHARFTPHECWSEGTLRRFVVTVGTTQLES 364 Query: 318 -------------YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 Y + ++ + +V + + Sbjct: 365 LCVLRRAYLADDDYRISAQPGVSCENAREGKKMQEQFEIFVTRVRRVAAQLPVHGIRDLA 424 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + G D++ GIPPG +G+IL + + ++ L ++++ Sbjct: 425 VNGRDLIAQGIPPGPTIGHILNALFDMVLMQPSRNTRPQLLEHAQEIV 472 >gi|154500880|ref|ZP_02038918.1| hypothetical protein BACCAP_04565 [Bacteroides capillosus ATCC 29799] gi|150270380|gb|EDM97706.1| hypothetical protein BACCAP_04565 [Bacteroides capillosus ATCC 29799] Length = 438 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 95/436 (21%), Positives = 176/436 (40%), Gaps = 54/436 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMN-LSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L+LL ++ +VGGAVRD +M + +D DIAT+ LP +V +FS Y +I Sbjct: 5 PQVETVLALLEASGFEAFLVGGAVRDYVMGKRAAKDWDIATSALPQQVKAVFS--GYHLI 62 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T + +GT+ ++ + +ITT R+D + +AD RRDFT+NAL + Sbjct: 63 ETGLKHGTVTVVVDHQPIEITTYRTDS--------GCPSPSLRADLERRDFTMNALAYNP 114 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + V+D VGG D+ ++ GD R ED LRILR RF + YG ID+ A Sbjct: 115 RTGVVDLVGGAGDIEKGIVRCTGDPDRRFREDGLRILRALRFASVYG-MEIDAATADAIR 173 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + + L+ ++ ERI E+ +L KN + G+ ++ + Sbjct: 174 RNQSLLRGVAVERIQVELTGILCGKNAAAVLSDFA--GVLAVTVPELAPMFGFAQHNPHH 231 Query: 252 AEQVFEW--------KIDSLLRFIVLIS-------------------WQDKKSIL---SM 281 + V+ +LR+ L+ +KS L + Sbjct: 232 DKDVWNHTVAVVENVSPQPVLRWAALLHDIGKPLCFSRTEDGVGHFFGHAQKSALLAGDI 291 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL------ 335 + R ++ + T +K+L +G++ +++ A Sbjct: 292 LSRLRFDNAGRERIVRLVRYHDMPITADRKLVKRLLSKHGEETARQLIELHRADTLGQSD 351 Query: 336 ---HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 + + + + ++L + + + G D++ G+ G+ +G +L C Sbjct: 352 ICQYRLGILDEVDAMLEELLREERCFSLKDLAVDGSDMMGLGLT-GRDIGRMLQECLNAV 410 Query: 393 INSSFQLSQEDLHHLL 408 ++ + L Sbjct: 411 LDERIPNERNALLAFA 426 >gi|311030316|ref|ZP_07708406.1| tRNA CCA-pyrophosphorylase [Bacillus sp. m3-13] Length = 405 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 94/397 (23%), Positives = 178/397 (44%), Gaps = 15/397 (3%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I I+ L + ++ VGG+VRD+LMN + DIDIAT+ P + +F KT + Sbjct: 9 IEIIERLEENGHEAYFVGGSVRDTLMNRVIGDIDIATSATPVEIQALFPKT----VDVGA 64 Query: 76 SYGTIKIIC-RKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +GTI +I ++ +++TT R+D TD R+ +V+F + + D RRDFT+NA+ ++ Sbjct: 65 EHGTIIVITTEQESYEVTTFRTDGNYTDNRHPDEVIFVKSLEEDLKRRDFTMNAIAMNKH 124 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 GK+ID G D+ + I+ +G A R ED LR+LR RF + +++++ + Sbjct: 125 GKIIDPFDGEKDINRQVIRTVGKAKDRFREDALRMLRAVRFASQL-SFSLEAETFLGIQA 183 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ER E+ KL+ + + + G+ FL + + +QL ++ + Sbjct: 184 DNALLENVSIERKTIEMEKLILGQGVKFGLELLVATGL--HSFLPLLDGKEEQLLKLGDV 241 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + DK + + LP++I + N K Sbjct: 242 PLYRLNNRSPVWTVLAYGLKIDKAEVEGFLVSWKLPKKIVKSVAE--NLLLMDKIQHQDW 299 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 + Y G + + ++ + L + T + I ++ ++ + G D+++ Sbjct: 300 QSEFVYRAGLERSLEAHQVMVVLGLDEDTSKKK--IYELFENLPIYSLKDIVFDGHDLME 357 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G GK + IL + I+ + + L + Sbjct: 358 LAGGKRGKWISEILSDMEMALIHEETKNERAALKEWV 394 >gi|291059673|gb|ADD72408.1| polynucleotide adenylyltransferase [Treponema pallidum subsp. pallidum str. Chicago] Length = 494 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 100/468 (21%), Positives = 167/468 (35%), Gaps = 75/468 (16%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + +VGGAVRD L+N S D D+AT P+RV +F +T +PT Sbjct: 26 LREVSERFIRAGFCIYVVGGAVRDFLLNRSAHDWDLATDAPPERVRMLFRRT----VPTG 81 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD-Q 131 I +GT+ I+ R + TT R + +D R+ V F + D RRDFT+NA A Sbjct: 82 IEHGTVTILFRGHSIECTTFRVESDYSDRRHPDSVCFAARIEDDLARRDFTVNAFAAALP 141 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ID GG DLRN I +GDAH R ED LR LR RF A +I++ A I Sbjct: 142 SGEIIDVCGGYADLRNGLICSVGDAHARFSEDALRPLRAVRFAAQL-SFSIEARTREAII 200 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + +S ER+ E++K+L P A+ M G+ +F + ++ + E Sbjct: 201 ALRAHTARISRERVRDELSKMLCTPRPSIALRLMEETGLLHTLFPALAQVCGRNEGEEKE 260 Query: 252 AEQVFEWKIDS----------------------LLRFIVLISWQDK-------------- 275 + + +R L+ Sbjct: 261 TQDSLQVSPQQRRDARTFAACAFAACDRVPAELAVRLAALLFPLAHYRTLPASGTGAALF 320 Query: 276 ------KSILSMAKKFSLPREIRYFLISF-FNCNFNQKTLSIPEIKKLF----------- 317 + + P + + + F + F Sbjct: 321 ICPPALAEARELLRGLKYPNYLTAQVCHLVAHARFTPHECWSEGTLRRFVVTVGTTQLES 380 Query: 318 -------------YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 Y + ++ + +V + + Sbjct: 381 LCVLRRAYLADDDYRISAQPGVSCENAREGKKMQEQFEIFVTRVRRVAAQLPVHGIRDLA 440 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + G D++ GIPPG +G+IL + + ++ L ++++ Sbjct: 441 VNGRDLIAQGIPPGPTIGHILNALFDMVLMQPSRNTRPQLLEHAQEIV 488 >gi|149179457|ref|ZP_01858009.1| metal dependent phosphohydrolase [Planctomyces maris DSM 8797] gi|148841703|gb|EDL56114.1| metal dependent phosphohydrolase [Planctomyces maris DSM 8797] Length = 422 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 95/418 (22%), Positives = 169/418 (40%), Gaps = 27/418 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L ++ GG VRD L+ +D D+AT LP+ V +F K R + Sbjct: 10 AVEIVRKLRDAGFQALWAGGCVRDLLLQKEPKDYDVATNALPEEVRTLFGKRR--TLAVG 67 Query: 75 ISYGTIKIICR--KKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 S+G I + +I T RS+ DGR + V + D+ RRDFTIN ++ D Sbjct: 68 ASFGVIIVRGHQPDCDVEIATFRSEGPYLDGRRPEHVKFTTAEEDAQRRDFTINGMFYDP 127 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + DYVGG DL I+ IG+ R+ ED LR+LR RF A ++ A Sbjct: 128 INDSLFDYVGGKADLNQHIIRAIGNPLERMQEDKLRLLRAIRFAATL-HFQLEESTRQAV 186 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 + ++S ERI E+ K+L AI + G+ K++ ++ + Sbjct: 187 QTMADQINVVSPERIADELRKMLIHPARSQAIALVQETGLLKQVLPELAPLWESAGNRSL 246 Query: 242 ---SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE---IRYFL 295 +LD+L +++ LL + Q I + K+ + ++L Sbjct: 247 WLQTLDRL-KLVSTHSFETAFATLLLDLPASGADQRLDEIYEICKRLRFSNHSLNLVHWL 305 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + + + + +K+L + + L+ L + C + + Sbjct: 306 VQQRHSLEHAPAMKLSRLKRLLAHEDCPQLFELIAADLSSRKQPLDDLEFCRQYRDHTPR 365 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED---LHHLLRK 410 P ++G+D++ GI G + ++L + + E L +L+K Sbjct: 366 EVLNPPPL-ISGNDLIDLGIKSGPQFKHLLTQVQDAQLEELIHTQDEAFALLSQILQK 422 >gi|299821657|ref|ZP_07053545.1| tRNA adenylyltransferase [Listeria grayi DSM 20601] gi|299817322|gb|EFI84558.1| tRNA adenylyltransferase [Listeria grayi DSM 20601] Length = 395 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 93/397 (23%), Positives = 168/397 (42%), Gaps = 18/397 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+ + D+DIAT+ P+ V IF KT T Sbjct: 8 ALPVLQKLTAAGFEAYFVGGSVRDFLIGRKIADVDIATSAFPEEVKEIFPKT----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ + +++ITT R++ D R +V F R D RRDFT+NA+ D Sbjct: 64 IEHGTVTVRENGTFYEITTFRTEGTYEDFRRPKEVTFIRSLTEDLRRRDFTMNAIAMDAA 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+ ID G + + I +GD H R ED LR++R RF + + +D A + Sbjct: 124 GRFIDPFRGKEAITAKQICAVGDPHERFHEDALRMMRAIRFVSQL-DFQLDQATRQALQE 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K L + ER +E KLL+ K A+ + + G+ E++L + + L Q+ Sbjct: 183 NKALLAHTAVERKTTEWVKLLQGKAVNKALKLLVDSGV--EVYLPGLQGKQEALLQLATW 240 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 F D L +++L + +S + + L + + + + Sbjct: 241 H--FSKLQDELATWLLLAAAVKPESASQFLRAWKLSNKTIQVVSKAYERLMDYPEEWTAT 298 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 Y G++V+ + A +L+ ++ + G D++ Sbjct: 299 D---LYYAGEQVLC---LVGSAFEIMYAKDGVVNELLKQYGELPIHSRDELMADGRDLMA 352 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G PGK + + ++E + + + + + Sbjct: 353 WTGKAPGKWLKITIEKLEKEIVQGRLSNTSDAIKRWV 389 >gi|51473228|ref|YP_066985.1| NTP polymerase. [Rickettsia typhi str. Wilmington] gi|51459540|gb|AAU03503.1| NTP polymerase [Rickettsia typhi str. Wilmington] Length = 387 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 135/408 (33%), Positives = 207/408 (50%), Gaps = 39/408 (9%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + IL+LLNK +S ++GG VRD+L+ DIDIAT ++P V+ I SK K Sbjct: 10 ISSKEYKKILNLLNKKG-QSRLIGGCVRDALLEKDTYDIDIATNLIPSEVINILSKANIK 68 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 +IPT + +GTI I + F+ITTLR D+ +GR+AKV+FT+D+ D+ RRDFTINAL Sbjct: 69 IIPTGLKFGTITAILNNEKFEITTLRKDIECNGRHAKVIFTKDFAEDAARRDFTINALSY 128 Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + ++ DY G DL+ + FIG A +RI EDYLRILRFFRF ++Y + +D D Sbjct: 129 CPFKNEIYDYFNGFKDLQQAKVVFIGKAFNRIKEDYLRILRFFRFSSYYANQ-LDDDSFK 187 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K GLK LS ERI SEI+K++ +K + M+ GI + IF +Q + Sbjct: 188 ACKALKNGLKTLSRERIKSEIDKIIVSKRVTQILEAMFEIGILELIF-SIQNYEIKFF-- 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN----CNFN 304 E+ +K++ ++ +L+ Q + L + + + ++S N FN Sbjct: 245 ----ERANNFKLELATKYSLLLYNQ-QNLNLKIFLDWKFSKNEAMQILSILNFLNDDEFN 299 Query: 305 QKTLSIPEIKKLFYLYGD----KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 K + + YL K+ +++K F+ L Y+ L+H L ++ K Sbjct: 300 IKKIWFEKKNYKEYLLAACIIGKLDYSQVKEFI-LKYDTLSHPKFELNGNDLLNLNIEK- 357 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 K++G L + K WI F+ S+ +L L Sbjct: 358 ------------------KEIGAKLEYLKNFWIEHDFKPSKSELLEKL 387 >gi|260654684|ref|ZP_05860174.1| polyA polymerase family protein [Jonquetella anthropi E3_33 E1] gi|260630700|gb|EEX48894.1| polyA polymerase family protein [Jonquetella anthropi E3_33 E1] Length = 435 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 96/421 (22%), Positives = 162/421 (38%), Gaps = 26/421 (6%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M+S+ ++ L + +VGG +RD+LM DID+AT P V Sbjct: 1 MISLPSS-------ARKVMDALERNGFSVFLVGGYLRDTLMGRKPGDIDLATDAKPKDVT 53 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSL 118 +F + T + +G++ ++ ++TT RS+ D R+ V F + D Sbjct: 54 ALFGAKY--TLETGVKHGSVTVMSDGLPIEVTTFRSEGAYADKRHPNSVSFLTNVTEDLR 111 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFT+NA+ + + +ID VGG DL+ R I+ +G+ R ED LRILR RF + Sbjct: 112 RRDFTVNAMAWNPEHGLIDPVGGREDLQRRRIRCVGNPDERFAEDGLRILRALRFASLLN 171 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +ID A + L+ +S R+W E++ + P + +F + ++ Sbjct: 172 -FSIDPRADEALNRFTSSLENVSVPRVWHELSLFFQGVRPGRLFAS--HLPVFAAVIPEL 228 Query: 239 QEISLDQLSQVIEAEQVFEW----KIDSLLRFIVLIS--WQDKKSILSMAK-----KFSL 287 + + A W D LR L S D++ +AK + Sbjct: 229 AFLCDNSPLSFQAATDAARWLDAVPQDLPLRLAALFSAVAPDQQEAAFLAKSVLEDRLQT 288 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 R R + S + E + L G + + L + L + + Sbjct: 289 DRNTRRAVQSLLKYP-AIALKTPDEARALLKAVGRETALDWLGLVLPILSQQEGEGTSRI 347 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + VL + + G D++ G PG +G IL E + L Sbjct: 348 LSAVLECNLPLDVSQLAVKGSDLIDLGCLPGPLIGEILSTLLDEVFAGRLPNERPALLRR 407 Query: 408 L 408 Sbjct: 408 A 408 >gi|239918793|ref|YP_002958351.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665] gi|281414981|ref|ZP_06246723.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665] gi|239840000|gb|ACS31797.1| tRNA adenylyltransferase [Micrococcus luteus NCTC 2665] Length = 483 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 80/455 (17%), Positives = 148/455 (32%), Gaps = 57/455 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + + +VGG VRD + D+D T PD + + Sbjct: 24 VVELGRRFEAAGHELSLVGGPVRDLFLGRPSPDLDFTTDADPDASEAVGAGWADATWDVG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI ++TT R++ R +V F + D LRRDFT+NA+ Sbjct: 84 RRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFGDSLEDDLLRRDFTVNAMALRLPA 143 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D GG+ DL ++ G +D LR++R RF + G + + A Sbjct: 144 LELVDPFGGMRDLHAGVLRTPGTPEDSFSDDPLRMMRAARFASQLG-FAVAPEVEQAMTA 202 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 + + I+S+ER+ E+ KL+ +P + + G+ I ++ + L+ Sbjct: 203 MAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGLADHILPELPALQLESDEHHRHK 262 Query: 246 ---------LSQVIEAEQVFEWK-IDSLLRFIVLISWQDKKSILSMAK------------ 283 L Q +E E + D +LR L+ K + K Sbjct: 263 DVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDVGKPATRRFEKGGAVTFRHHETV 322 Query: 284 ----------KFSLPREIRYFLISFFNCNFNQ---KTLSIPEIKKLFYLYGDKVMIAKLK 330 + + + + Y + ++ +L Sbjct: 323 GAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDAGWTDSAVRRYAHDAGDLLPRLH 382 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKP----------LFPLTGDDVVK-YGIPPGK 379 + + D+ L G ++ GI PG Sbjct: 383 ALTRSDVTTRNRRKAERLAHAYDDLERRIAEIAEAEELAAVRPDLDGQQIMALLGIRPGP 442 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 VG H + ++ Q + LR+ A Sbjct: 443 VVGRAYSHLLEWRLDEG-PHEQAEAEAELRRWWAE 476 >gi|224025809|ref|ZP_03644175.1| hypothetical protein BACCOPRO_02551 [Bacteroides coprophilus DSM 18228] gi|224019045|gb|EEF77043.1| hypothetical protein BACCOPRO_02551 [Bacteroides coprophilus DSM 18228] Length = 477 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 83/449 (18%), Positives = 170/449 (37%), Gaps = 58/449 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT--SI 75 I ++ + VGG VRD +N +DIDI + + F K + Sbjct: 15 ISKTADEMGLECYAVGGYVRDIFLNRPSKDIDIVVVGSGIEIAQAFGKKLGRGAHVSVFK 74 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--- 132 ++GT ++ + R + + +V + D RRDFTINA+ Sbjct: 75 NFGTAQVKYHDTEVEFVGARKESYSHDSRKPIVENGTLEDDQNRRDFTINAMAVCLNQAR 134 Query: 133 -GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GG+ DL+ R I+ D +D LR++R RF I+ + A Sbjct: 135 FGELVDPFGGMEDLKERIIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-IEDETFAALE 193 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + K+ +KI+S ERI E+NK+L + P V + G+ + IF ++ + ++ Sbjct: 194 RNKERIKIISRERIADELNKILLSPIPSKGFVELDRCGLLELIFPELTALQGVEVRNGRA 253 Query: 252 AEQVFEWKIDS-----------LLRFIVLISWQDKKSILS-------------------- 280 + F ++ LR+ L+ K Sbjct: 254 HKDNFYHTLEVVDNISKVSNNLWLRWATLLHDIGKPRTKRWEPKIGWTFHNHNFIGEKMI 313 Query: 281 --MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKVMIAKLKIF 332 + +K LP E ++ + ++ +++L + GD + + + Sbjct: 314 PDIFRKMKLPMNEKMKYVQKLVGLHMRPIVIADDVVTDSAVRRLLFEAGDDI-DDLMMLC 372 Query: 333 LALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + F+ L+ L + + P+ G ++++ + + P +++G Sbjct: 373 EADITSKNEARKQRFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGAEIMRVFNLEPCREIG 432 Query: 383 NILVHCKQEWINSSFQLSQEDL-HHLLRK 410 ++ K ++ + ++L+K Sbjct: 433 SLKSSIKDAILDGVIPNEHDAAFEYMLKK 461 >gi|221194633|ref|ZP_03567690.1| cca-adding enzyme [Atopobium rimae ATCC 49626] gi|221185537|gb|EEE17927.1| cca-adding enzyme [Atopobium rimae ATCC 49626] Length = 473 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 97/454 (21%), Positives = 172/454 (37%), Gaps = 58/454 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + L +L ++ IVGG VRD+L+ + DIDI T+ ++ + Y Sbjct: 22 LLPEYAVCALEILESAGFEAWIVGGWVRDALLGSATHDIDITTSAHWEQTAETYRAAGYV 81 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINAL 127 V T I +GT+ ++ +ITT R++ +D R+ +V F D RRDFT+NA+ Sbjct: 82 VHETGIKHGTVTVVVNGHPLEITTYRTEGTYSDHRHPDEVCFVDSIDKDLARRDFTVNAM 141 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + ++D G DL+ R I+ +GDA R ED LR+LR RF G +I+ Sbjct: 142 AFHPRRGLLDPYHGQYDLQQRCIRAVGDAQSRFEEDALRVLRAIRFACKLG-FSIEKKTA 200 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A + L ++ ERI +E+ +++A A+ + G+ + ++ + Sbjct: 201 DALSASASRLAFVAQERIGNEMCAIMDAGVMARALRIGF-AGVAAAV-PELAAMEGFDQQ 258 Query: 248 QVIEAEQVFEWKIDS--------------LLRFIVLISWQDKKSILS------------- 280 A V E LR+ L+ K S Sbjct: 259 SQYHAYDVCEHTARVCAGVEAFSAGRASCALRWAALLHDVAKPKTFSEDVSHRGHFFGHP 318 Query: 281 ---------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD--------- 322 + + ++P+ + I + + +IP I++ + Sbjct: 319 EVSAQMAQTILESMAIPQSVVRQAIQLIRWHDLEIDKNIPSIRRFIATLDEGWIGGGALL 378 Query: 323 -------KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YG 374 K A K Y + + Q + + ++G D+++ Sbjct: 379 ATQIIELKQADALAKAPACREYALELDDISRMVRQEIQKGVAQNPQDLAVSGTDIMQLLH 438 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 I PG VG L + ++ ++EDL LL Sbjct: 439 IGPGPSVGMYLRQLFEAYLAGEVDNTREDLLALL 472 >gi|297193312|ref|ZP_06910710.1| RNA nucleotidyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197718371|gb|EDY62279.1| RNA nucleotidyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 488 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 84/461 (18%), Positives = 166/461 (36%), Gaps = 67/461 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 30 ADDLARRFQDAGFGLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWDVG 89 Query: 75 ISYGTIKIICRKK--------YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 I++GT+ + ++TT RS+ R +V + + D +RRDFT+N Sbjct: 90 IAFGTVGAHKAGRVGDAVQSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEQDLVRRDFTVN 149 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + ID GL+DL + ++ G +D LR++R RF A + + Sbjct: 150 AMAVALPAKEFIDPHDGLSDLAAKVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAP 208 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + + A + ++I+S+ER+ E NKLL + +P + + + G+ + ++ + L+ Sbjct: 209 EVVAAMKAMAERIEIVSAERVRDEFNKLLLSAHPRKGLSLLVDTGLAAHVLPELPALRLE 268 Query: 245 -------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK-------- 283 L+ + +A + E D +LR L+ K + Sbjct: 269 SDEHHRHKDVYEHSLTVLDQAIALEEDGPDLVLRLAALLHDIGKPRTRRFEQDGRVSFHH 328 Query: 284 --------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEI 313 E+ + + P + Sbjct: 329 HEVVGAKMTKKRMTALKYSNEMVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLL 388 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK- 372 +L L + AL +D LQ ++ + L G+++ + Sbjct: 389 DRLHKLTRSDCTTRNKRKAGALSRAYDGLEDRIAELQEQEELDAIRPD---LNGNEIQEI 445 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 GI PG +G + + + + ++ L++ A Sbjct: 446 LGIGPGPMIGKAYAFLLELRLENG-PMERDAAVSALKEWWA 485 >gi|115929256|ref|XP_001187735.1| PREDICTED: similar to Chain A, Crystal Structure Of Human Cca-Adding Enzyme [Strongylocentrotus purpuratus] Length = 407 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 155/299 (51%), Gaps = 9/299 (3%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + + +L + L + + + I GGAVRD L QD+D AT PD++ Sbjct: 69 IDSPEFRGLFTPELKQLAELFERYQYELRIAGGAVRDLLTKKQPQDVDFATIATPDQMKE 128 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F+K ++I +GTI K+ F+ITTLR D +TDGR+A+V FT DW+ D+ R Sbjct: 129 MFTKEGIRMINAKGEKHGTITARINDKENFEITTLRIDRVTDGRHAEVEFTTDWRTDAER 188 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G + D+ G L I F+G+A RI EDYLRILR+FRF+ Sbjct: 189 RDLTINSMFLGLDGTLYDFFNGKEALERCHIAFVGNAATRIQEDYLRILRYFRFYGRIAR 248 Query: 180 KN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++ + L + + GL +S ERIW E+ K+L + I MY+ + + I + Sbjct: 249 ESNKHTPETLQSIRENGHGLAGISGERIWMEVRKILTGNFAADLIHCMYDLDLARHIGIP 308 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 E L +L +V + Q ++L + ++D+ +L+M ++ + E R + Sbjct: 309 -PEADLQELHKVYQRSQSLHPHPVTILSAL----FKDENDVLTMEQRMRISAEERKTAL 362 >gi|15603895|ref|NP_220410.1| poly(A) polymerase (pcnB) [Rickettsia prowazekii str. Madrid E] gi|3860586|emb|CAA14487.1| POLY(A) POLYMERASE (pcnB) [Rickettsia prowazekii] gi|292571611|gb|ADE29526.1| Poly(A) polymerase [Rickettsia prowazekii Rp22] Length = 387 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 133/408 (32%), Positives = 207/408 (50%), Gaps = 39/408 (9%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + ILSLLNK +S ++GG VRD+L++ DIDIAT ++P + I S K Sbjct: 10 ISSKEYKKILSLLNKKG-QSRLIGGCVRDALLDKDTYDIDIATNLMPGEAINILSSANIK 68 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 +IPT + +GTI I + F+ITTLR D+ +GR+AKV+F++D+ D+ RRDFTINAL Sbjct: 69 IIPTGLKFGTITAILNNEKFEITTLRKDIECNGRHAKVIFSKDFAEDAARRDFTINALSY 128 Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + ++ DY G DL+ + FIG A +RI EDYLRILRFFRF ++Y + +D + Sbjct: 129 CPFKNEIYDYFDGFKDLQRAKVVFIGKAFNRIKEDYLRILRFFRFSSYYANQ-LDYESFK 187 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K GLK LS ERI SEI+K++ +K + M+ GI + IF +Q + Sbjct: 188 ACDTLKYGLKTLSRERIKSEIDKIIVSKRATQILEAMFKIGILELIF-SIQNYEIKFF-- 244 Query: 249 VIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN----CNFN 304 E+ +K++ ++ +L+ Q + L + + + ++S N FN Sbjct: 245 ----ERANNFKLELATKYALLLYNQ-QNLNLKIFLNWKFSKHEAMQILSILNFLNDAEFN 299 Query: 305 QKTLSIPEIKKLFYLYG----DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 K + + YL DK+ +++K F+ L Y+ L+H L ++ K Sbjct: 300 IKKIWFEKKNYKEYLLAACIIDKLDYSQVKEFI-LKYDTLSHPKFELNGNDLLNLNIEK- 357 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 K++G L + K WI F+ S+ +L L Sbjct: 358 ------------------KEIGAKLEYLKNFWIEHDFKPSKSELLEKL 387 >gi|196230079|ref|ZP_03128942.1| tRNA adenylyltransferase [Chthoniobacter flavus Ellin428] gi|196225676|gb|EDY20183.1| tRNA adenylyltransferase [Chthoniobacter flavus Ellin428] Length = 447 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 171/440 (38%), Gaps = 42/440 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++ L + GG VRD LM + D DIAT P++V +F +T I Sbjct: 8 AESARRVVQQLQDAGFIAYYAGGCVRDQLMGVEPHDYDIATNAHPEQVQNLFRRT----I 63 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +G I ++ F + T R+D DGR + V + D+ RRDFTIN L+ D Sbjct: 64 AVGAHFGVIIVLQDDFEFQVATFRNDGQYIDGRRPESVSFATPEEDATRRDFTINGLFFD 123 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 GK+IDYVGG DL + ++ IG+ + R+ ED LR+LR RF A ++D A Sbjct: 124 PIAGKLIDYVGGQQDLAKKMLRAIGNPYDRLREDRLRLLRAVRFGATLC-FDLDGATWRA 182 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ 248 + + + +S+ERI E+ K+ + + + G+ + +++ + +Q Q Sbjct: 183 VCENARHIHEVSAERIREELVKIFLSPKRVRGFDLLDESGLMAAVLPEIEALKGCEQPPQ 242 Query: 249 VIEAEQVFEW----------KIDSLLRFIVLISW----------------------QDKK 276 VF ++ L VL + Sbjct: 243 FHPEGDVFVHTRIMLGLLPTQVSVPLVLSVLFHDIGKPGTYAVDPDGRIRFSGHDKLGAE 302 Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 ++ + R + + K + + KL M +L++ Sbjct: 303 MTEALMSRLRFSRAEIDATVEAVANHMVFKDVQQMRVAKLKRFLARPHMEDELELHRVDC 362 Query: 337 YNNLTHQDTCFILQVLSDIIHWKKPLFP--LTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 ++ D L+ + + + P +TG +++ G+ PG + IL + + Sbjct: 363 TSSHGMLDNYEYLKAKREEFANEPLIPPPLITGRELIALGLKPGPRFAEILEAVQSRQLE 422 Query: 395 SSFQLSQEDLHHLLRKLIAS 414 + + S+E L + + Sbjct: 423 GTLKTSEEALEWVKNDWLGE 442 >gi|297622074|ref|YP_003710211.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044] gi|297377375|gb|ADI39205.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044] Length = 403 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 172/385 (44%), Gaps = 12/385 (3%) Query: 35 AVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTL 94 VRD L++ DIDIAT P++++ +F KT I IS+G + ++ +++ T Sbjct: 28 WVRDFLLDHPSDDIDIATDAKPEKIVELFQKT----IEVGISFGVVVVLMDGHQYEVATF 83 Query: 95 RSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKF 152 R DL DGR + + D+ RRDFTIN ++ D + VID+V G DL I+ Sbjct: 84 REDLGYEDGRRPTQCAYTNAEGDAKRRDFTINGMFYDPLEKNVIDFVDGRKDLEKGVIRA 143 Query: 153 IGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL-KILSSERIWSEINK 211 IGD + R ED LR++R RF +G +D D A L ++ ER+W E+ K Sbjct: 144 IGDPYERFKEDRLRMIRAIRFTYRFG-YALDPDTEQAIKDHAHCLFPAVAMERVWHELQK 202 Query: 212 LLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLIS 271 + + A++ M+ G+ E+F ++++ +L + +EA F + ++L+ + L Sbjct: 203 MARYPSFGEALLKMHAVGLLAEVFPPLKKVPEIELLKRVEAINRFPLECPAVLQVMELFP 262 Query: 272 WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 + ++ + + I +T + LY L++ Sbjct: 263 NSPLEEQVAFCYYLKVSNKE----IKLVEYTHQVRTQVSDQDADWVPLYAHPQAETVLQV 318 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 A + ++ I ++ +++ GI PG+++G +L ++ Sbjct: 319 VCARKNGGQFQVHRERMDRLRVHINRIVNQSPVVSASMLLEEGIVPGRQMGELLREAERL 378 Query: 392 WINSSFQLSQEDLHHLLRKLIASSQ 416 I+ L +E L L ++ + S + Sbjct: 379 AISHDLHLPEEVLLLLKKQTVWSKE 403 >gi|294630321|ref|ZP_06708881.1| tRNA adenylyltransferase [Streptomyces sp. e14] gi|292833654|gb|EFF92003.1| tRNA adenylyltransferase [Streptomyces sp. e14] Length = 477 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 87/462 (18%), Positives = 169/462 (36%), Gaps = 67/462 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 19 ADDLARRFEEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVWDVG 78 Query: 75 ISYGTIKI--------ICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 I++GT+ + R ++TT RS+ R +V + + D +RRDFT+N Sbjct: 79 IAFGTVGAQKQARVEGVERCFQIEVTTYRSEAYDRTSRKPEVSYGDSIEQDLVRRDFTVN 138 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + ID GGL DL R ++ G +D LR++R RF A + + Sbjct: 139 AMAVALPEKDFIDPHGGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQL-DFEVAP 197 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + + A + + ++I+S+ER+ E+NKL+ + +P + + + G+ + ++ + L+ Sbjct: 198 EVVTAMTEMAERIEIVSAERVRDELNKLILSDHPRKGLTLLVDTGLADRVLPELPALRLE 257 Query: 245 Q-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK-------- 283 + L + +A + E D LR L+ K K Sbjct: 258 RDEHHRHKDVYDHTLIVLEQAIALEENGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHH 317 Query: 284 --------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEI 313 E+ + + P + Sbjct: 318 HEVVGAKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLL 377 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK- 372 +L L + AL ++ LQ ++ + L G+ +++ Sbjct: 378 DRLHKLTRSDCTTRNKRRAAALSRAYDGLEERISQLQEQEELDAIRPD---LDGNQIMEI 434 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 G+ PG VG H + + + + + L++ A Sbjct: 435 LGVKPGPAVGQAYKHLLELRLENG-PMDYDAAVAALKEWWAE 475 >gi|320120312|gb|EFE28537.2| polyA polymerase [Filifactor alocis ATCC 35896] Length = 444 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 108/439 (24%), Positives = 192/439 (43%), Gaps = 40/439 (9%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +++ I +L + + +VGG VRD +N D D+AT+ P ++ + + Sbjct: 4 LLSNEVKEIFQILQENGHQVYLVGGIVRDYFLNRENYDFDMATSATPTEMISLLKH--FD 61 Query: 70 VIPTSISYGTIKI-ICRKKYFDITTLRSDLITDG-RYA-KVVFTRDWKADSLRRDFTINA 126 + T +GTI+I + K +ITT R + D RY K+ F D D RRDFT+NA Sbjct: 62 LDATDSRFGTIRIKVAGKNDIEITTFRMEEYEDETRYPTKIDFVNDILIDLKRRDFTMNA 121 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 L + +G +ID GL D+R IK IG R LED LR+LR RF A + ID D Sbjct: 122 LAWNHKG-LIDCFHGLEDIRQSCIKTIGVPTKRFLEDPLRMLRAIRFSAQL-DFRIDEDS 179 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245 A ++ + LS E + +E K+L + NP AI +++ I + IF D +I D+ Sbjct: 180 YQAIVENAYLISRLSMESMRNEFVKILISNNPNYAIKCLFDSNIVEYIFFD-SDIEWDRI 238 Query: 246 --------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI-----------LS 280 L ++ E ++ + L + S + KK + Sbjct: 239 YLQIRENNCKILFLLQRLSRLPCQLEVRLSAFLYHLFSCSLESKKEVAGKLISIEQLSEK 298 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSI-PEIKKLFYLYGDK----VMIAKLKIFLAL 335 + K+ + + + + ++ +S I +L G+ +M +++ F L Sbjct: 299 LLKRLKFSKRMISRVCNIIKYYPIEEYISAQTNINRLICAAGEDCWKNIMDIRIQYFSYL 358 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + ++ I + + + K +TG+D++ G GK++G I+ I Sbjct: 359 GVQDGCYEILDRIRKRMKENSIIHKKQLCVTGNDMISLGYK-GKEIGKIIDVLYDAVIEG 417 Query: 396 SFQLSQEDLHHLLRKLIAS 414 + + ++ L +++S Sbjct: 418 NLKNTRVSLMKRAADMMSS 436 >gi|323344432|ref|ZP_08084657.1| polyA polymerase family protein [Prevotella oralis ATCC 33269] gi|323094559|gb|EFZ37135.1| polyA polymerase family protein [Prevotella oralis ATCC 33269] Length = 476 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 94/467 (20%), Positives = 176/467 (37%), Gaps = 66/467 (14%) Query: 8 KWFHDSDLINILS--LLNK-------GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58 K F D+DL IL + +K + +VGG VRD + DID+ + Sbjct: 2 KLFSDADLARILDKDIFHKISLAADSLGMECYVVGGYVRDIFLERPSNDIDVVVVGSGIQ 61 Query: 59 VMRIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116 V K + ++GT ++ + R + + V + D Sbjct: 62 VADALKKLLGRRAHISVFRNFGTAQVKFGSMEIEFVGARKESYSHDSRKPAVENGTLEDD 121 Query: 117 SLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRDFTINAL ++ G++ID GGL D+ + I+ D +D LR++R R Sbjct: 122 QNRRDFTINALAICLNKERFGELIDPFGGLEDMEDGIIRTPLDPDITFSDDPLRMMRCVR 181 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A I+ A + +KI+S+ERI E++K++ P +Y G+ + Sbjct: 182 FAAQLNFF-IEDATFEALRRNADRIKIVSAERIADELHKIMMTPVPSKGFFELYRSGLLE 240 Query: 233 EIFLDVQEISL----------DQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS- 280 I ++ + + + +E D+L LR+ L K Sbjct: 241 IILPELCALDVVDTRNGKAHKNNFYHTLEVVDNIAKHTDNLWLRWAALFHDIGKPRSKRW 300 Query: 281 ---------------------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----I 313 + ++ P + + F+ + + T++ E + Sbjct: 301 NPAVGWTFHNHNFIGAKMLPGIFRRLKFPMDAKLKFVQKLVDMHMRPITIADDEVTDSAV 360 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFP 364 ++L GD V L + A + + F+ L+ L + + + Sbjct: 361 RRLMNDAGDDVNDLML-LCEADITSKNAQRKQRFLDNFRIVREKLKNLEERDYKRLLQPC 419 Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + G+++++ + P ++VG + K +++ +E L LLRK Sbjct: 420 IDGNEIMEMFHLQPSREVGALKQSLKDAVLDNKVPNEREPLLELLRK 466 >gi|302335866|ref|YP_003801073.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Olsenella uli DSM 7084] gi|301319706|gb|ADK68193.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Olsenella uli DSM 7084] Length = 464 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 87/447 (19%), Positives = 169/447 (37%), Gaps = 58/447 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ L ++ +VGG VRD+L+ D+D+ T+ + R+ +V T Sbjct: 15 ALRVVFALESAGFEAWVVGGWVRDALLGTPSHDVDVTTSAPWEAAARVLRAAGIEVHETG 74 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +++GT+ + + + TT R + +D R+ +V+F D + D RRD T+NA+ Sbjct: 75 VAHGTVTAVVDGRAVETTTYRVEGSYSDHRHPDEVLFVDDIRDDLARRDLTVNAMAYHPA 134 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG DL I+ +G R ED LR+LR RF G ++ A + Sbjct: 135 RGLLDPFGGREDLATGVIRAVGVPRRRFEEDALRVLRAVRFACRLG-FVVEPHTQEALVA 193 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------S 242 +GL ++ ERI E++ ++ A+ + + ++ + + Sbjct: 194 CARGLGDIARERIGQELDGIVGTGRMGWALT--HETEVLSAAIPEIAAMVGFDQRSPYHA 251 Query: 243 LDQLSQVIE----AEQVFEWKIDSLLRFIVLISWQDKKS--------------------- 277 D L+ E+ S LR+ L+ K Sbjct: 252 FDVLTHTAHVCHAVEEFTGGMASSELRWAALLHDVAKPQTFTIDETGRGHFYGHPKVGAD 311 Query: 278 -ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF----------------YLY 320 ++ ++ +LP ++ + + + + + I++ L Sbjct: 312 MAAAIMRRLALPGDLVAPVRALVRLHDHVVKPTGRSIRRTLLKFENACPGRALELTFALL 371 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGK 379 K A K+ A Y + + + + ++ W+ ++G DV+ GI PG Sbjct: 372 DLKRADAASKVSSAAKYAIDLDRMSAAVREEVARGGAWRLRDLDVSGADVIACLGISPGP 431 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHH 406 VG IL +N + L Sbjct: 432 AVGIILNEMLSSVVNGDVPNERRALLA 458 >gi|254302647|ref|ZP_04970005.1| tRNA adenylyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322839|gb|EDK88089.1| tRNA adenylyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 451 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 102/442 (23%), Positives = 180/442 (40%), Gaps = 55/442 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +DID T + + + +F + K T Sbjct: 14 IEILNKLNKYG-KGYIVGGAIRDILLGLEPKDIDFTTNLPYETLKDLFKECNPK--ETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D + KV F D K D RRDFTINA+ Sbjct: 71 SFGVLRIRVNNIDYEIAKFREDNYEEKDGMKIIPEEKKVSFVDDIKNDLARRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ +++D G D+ N+ I F+G+A RI+ED LR+LR FRF + ++ + + Sbjct: 131 YNETEEIVDLYNGQKDIENKVINFVGNAEERIIEDPLRVLRAFRFMSRLN-FSLSENTIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K LK + ERI E +KLL +N N + M + G+ + I + + + Sbjct: 190 AIKKQKYLLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLELIIPEFKATYDFEQYN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSI---------------------- 278 +F D L++ L+ K + Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELKYSALLHDIAKPIVQTFDEKGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFN----------QKTLSIPEIKKLFYLYGDKVMIAK 328 + + LP ++ + + K LS L+ L Sbjct: 310 RDILTRLKLPVKLIDTVAEIIKKHMILYRDVTDKKFNKLLSEMGYDNLWRLIEHSNADNG 369 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 K ++ N H+ + + + + + G D+++ G G ++G I Sbjct: 370 SKNNEVVNTENDLHE---RLKRAVEKQMQITVNDLAINGKDLIELGFI-GTEIGQIKKEL 425 Query: 389 KQEWINSSFQLSQEDLHHLLRK 410 ++++ Q +E++ + +++ Sbjct: 426 LDKYLSEELQNEKEEMLNYVKE 447 >gi|229586245|ref|YP_002844746.1| Poly(A) polymerase [Rickettsia africae ESF-5] gi|228021295|gb|ACP53003.1| Poly(A) polymerase [Rickettsia africae ESF-5] Length = 436 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 132/446 (29%), Positives = 205/446 (45%), Gaps = 80/446 (17%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ-------------------------- 46 ILSLLN+ ++ ++GG VRD+L+ N + + Sbjct: 17 KILSLLNEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDTEHRIAMYINVREDSSTGST 75 Query: 47 -------------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 DIDIAT + P V I S + K IPT + +GTI + Sbjct: 76 YKLPLEASYPRDRLEKGSCDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNE 135 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLR 146 F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL + ++ DY G DL+ Sbjct: 136 KFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQ 195 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK LS ERI Sbjct: 196 QEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGNFKACKALKDGLKTLSRERIK 254 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 SE++K++ +K + M+ GI + IF +Q + EQ ++K++ + R+ Sbjct: 255 SEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRY 307 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFN----CNFNQKTLSIPEIKKLFYLYGD 322 +L+ Q + L + + + ++S N FN K + + YL Sbjct: 308 ALLLYCQKDLN-LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAA 366 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382 +++ L H + ++ +P F + G+D++ I KK+G Sbjct: 367 RII------------GKLNHSQVKEFILKYDALL---RPKFQVNGNDLLNMNIEK-KKIG 410 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408 L + K WI F+ S+ +L L Sbjct: 411 AKLEYLKNFWIEQDFKPSKLELLAKL 436 >gi|32267207|ref|NP_861239.1| poly(A) polymerase [Helicobacter hepaticus ATCC 51449] gi|32263260|gb|AAP78305.1| poly(A) polymerase [Helicobacter hepaticus ATCC 51449] Length = 468 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 187/438 (42%), Gaps = 51/438 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ------DIDIATTILPDRVMRIFSKT 66 +++ IL L ++ IVGG VRD L+ + D DI T+ LP VM++F+ T Sbjct: 47 KEVLYILESLQSAGYEAYIVGGCVRDMLLAQNSHIPYVINDYDITTSALPQEVMKLFAHT 106 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTI 124 I T + YGTI ++ + +++TT R D + R K V FTR D RRDFTI Sbjct: 107 ----IHTGLKYGTISVLIESQSYEVTTFRIDGSYINARSPKNVTFTRSLAQDLQRRDFTI 162 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NAL +ID VGGL DL+++ I +GDA R+ ED LRILR RF + G ID Sbjct: 163 NALAYAPCSGLIDEVGGLADLQHKRIVCVGDAFARLNEDILRILRALRFSSTLG-FEIDF 221 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 A + +++ ERI E KLL + F+ + ++ L Sbjct: 222 HTKEAIFSLSSKVCLIAKERIRVEFTKLLCGAWVKVVLDE------FRFVISEI----LS 271 Query: 245 QLSQVIEAEQVFEWKIDSL---------LRFIVLISWQDKKSILSMAKKFSLP---REIR 292 Q+ ++I +++ + L L ++ + D+ + + ++ Sbjct: 272 QMREIIANNTLWQHTLSILDNLTPRSHTLAWVAFLYHTDELKARDILQSLKFDTYNKDYI 331 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352 L+ + N ++ + L + G K A K L L + QDT Q L Sbjct: 332 CSLLVYVKKPLNNNLTTLKTM--LVDMGGRKKGEAMFKDMLKLKVAVINAQDTADKAQKL 389 Query: 353 SDIIHW--------------KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 + + L G D++ G+P GK++G IL QE ++ Sbjct: 390 QMLDSIHSLLECVLASSVPLELKELCLNGRDLIYIGVPKGKRIGEILHFLHQEVLHERVS 449 Query: 399 LSQEDLHHLLRKLIASSQ 416 ++E L + + + + Sbjct: 450 NTKEALLSKAQAFLQTKK 467 >gi|302559683|ref|ZP_07312025.1| tRNA adenylyltransferase [Streptomyces griseoflavus Tu4000] gi|302477301|gb|EFL40394.1| tRNA adenylyltransferase [Streptomyces griseoflavus Tu4000] Length = 488 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 89/464 (19%), Positives = 170/464 (36%), Gaps = 67/464 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ D+D T P V+RI V Sbjct: 29 ADELARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLRIVRPWADAVWDVG 88 Query: 75 ISYGTIKIICRKK--------YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 I++GT+ + ++TT RS+ R +V + + D +RRDFT+N Sbjct: 89 IAFGTVGAQKDARVGDADRSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVN 148 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + ID GGL DL R ++ G +D LR++R RF A + + Sbjct: 149 AMAVALPEKRFIDPHGGLGDLAARALRTPGTPEASFSDDPLRMMRAARFAAQL-DFEVAP 207 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + + A + ++I+S+ER+ E+NKL+ + +P + + + GI + + ++ + L+ Sbjct: 208 EVVAAMKEMAGRIEIVSAERVRDELNKLILSAHPRKGLSLLVDTGIAEYVLPELPALHLE 267 Query: 245 Q-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK-------- 283 + L + +A + E D LR L+ K K Sbjct: 268 RDEHHRHKDVYDHTLIVLEQAMALEEGGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHH 327 Query: 284 --------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEI 313 E+ + + P + Sbjct: 328 HEMVGAKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLL 387 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK- 372 +L L + AL ++ LQ ++ + L G+ +++ Sbjct: 388 GRLHKLTRSDCTTRNRRKAAALSRAYDGLEERIAQLQEQEELDAIRPD---LDGNQIMEI 444 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ PG VG H + + + ++ + L++ A+ Q Sbjct: 445 LGVKPGPAVGQAYKHLLELRLENG-PMAHDAAVAALKEWWAAQQ 487 >gi|257466072|ref|ZP_05630383.1| Poly(A) polymerase [Fusobacterium gonidiaformans ATCC 25563] gi|315917228|ref|ZP_07913468.1| poly(a) polymerase [Fusobacterium gonidiaformans ATCC 25563] gi|313691103|gb|EFS27938.1| poly(a) polymerase [Fusobacterium gonidiaformans ATCC 25563] Length = 446 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 102/438 (23%), Positives = 188/438 (42%), Gaps = 44/438 (10%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ IL L K + +VGG+VRD L+ V D D T + + + +IFSK Y I Sbjct: 10 EKVLYILEELEKYG-EGYLVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK--YFCIE 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 T ++G +++ + F+I + RS+ +DGR + V+F + + D RRDF+INA+ +Q Sbjct: 67 TGKAFGVLRLRIDGEEFEIASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSINAMAYNQ 126 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + ++DY DL N+ I+FIG+ RI ED LRI+R FRF + G +++S+ A + Sbjct: 127 EKGLLDYYDAQKDLENKVIRFIGNPRERIQEDGLRIMRAFRFMSQLG-FSLESNTKKAIM 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + K L ++ RI E NKL+ + + M G+ + I ++ + + Sbjct: 186 EEKGMLGKIAKSRITEEWNKLILGDFVVETLEEMKKTGVLELILPSLKSLYHFNQNNPYH 245 Query: 252 AEQVFEWKIDSL--------LRFIVLISWQDKKSILSMAKK------------------- 284 + ++E + + LR + K ++ +K Sbjct: 246 SYDLWEHTMQVVKSVPKDLDLRLAAIFHDIGKPLTKTIDEKTGYYHFYGHEKKGAERIRS 305 Query: 285 -----FSLPREIRYFLISFFNCNFNQKTLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYN 338 + R + + S + IKKL +G + +K+ +A + Sbjct: 306 ILQEELEESNKTRKEVEFLIENHMILHRNSSEKGIKKLISHFGIERTEKLIKLSIADNLG 365 Query: 339 -NLTHQDTCFILQVLSDIIHWKK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 NL + + I+ +K + G ++K G GK++ I + E + Sbjct: 366 KNLQQLRENNVADLFYKIVEKQKIPTLQELAIDGFALMKLGYQ-GKEIQKIKEYLLNEIL 424 Query: 394 NSSFQLSQEDLHHLLRKL 411 + + L ++L Sbjct: 425 EGKIENKETALLSKAKEL 442 >gi|29347385|ref|NP_810888.1| tRNA nucleotidyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|29339285|gb|AAO77082.1| tRNA nucleotidyltransferase [Bacteroides thetaiotaomicron VPI-5482] Length = 502 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 88/466 (18%), Positives = 178/466 (38%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q ++F + +I + + +VGG VRD + +DID+ Sbjct: 26 MIELTQEELKQYFSEPIFGHIAETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 85 Query: 58 RVMRIFSKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K R + ++GT ++ + + R + +V + Sbjct: 86 AMAEALGKRLGRGAYVSVFKNFGTAQVKYKGTEVEFVGARKESYQRDSRKPIVEDGTLED 145 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINA+ G+++D GG+ D++ +TI+ D +D LR++R Sbjct: 146 DQNRRDFTINAMAVCLNKARFGELVDPFGGMADMKEKTIRTPLDPDITFSDDPLRMMRCI 205 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF ID D + + K ++I+S ERI E+NK++ + P V + G+ Sbjct: 206 RFATQLNFY-IDDDTFESLCRNKDRIEIISRERIADELNKIILSPIPSKGFVELERSGLL 264 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS 280 IF ++ + D +E K D+L LR+ L+ K + Sbjct: 265 PLIFPELAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKR 324 Query: 281 ----------------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K LP E ++ + + ++ Sbjct: 325 WEPKAGWTFHNHNFIGEKMIPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSA 384 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 385 VRRLLFEAGDDI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 443 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 444 PVSGEEIMETFGLQPCREVGALKSAIKDAILDGVIPNEYEAAHAFM 489 >gi|115640845|ref|XP_784774.2| PREDICTED: similar to Chain A, Crystal Structure Of Human Cca-Adding Enzyme, partial [Strongylocentrotus purpuratus] Length = 386 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 155/299 (51%), Gaps = 9/299 (3%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + + + +L + L + + + I GGAVRD L QD+D AT PD++ Sbjct: 69 IDSPEFRGLFTPELKQLAELFERYQYELRIAGGAVRDLLTKKQPQDVDFATIATPDQMKE 128 Query: 62 IFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 +F+K ++I +GTI K+ F+ITTLR D +TDGR+A+V FT DW+ D+ R Sbjct: 129 MFTKEGIRMINAKGEKHGTITARINDKENFEITTLRIDRVTDGRHAEVEFTTDWRTDAER 188 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G + D+ G L I F+G+A RI EDYLRILR+FRF+ Sbjct: 189 RDLTINSMFLGLDGTLYDFFNGKEALERCHIAFVGNAATRIQEDYLRILRYFRFYGRIAR 248 Query: 180 KN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ++ + L + + GL +S ERIW E+ K+L + I MY+ + + I + Sbjct: 249 ESNKHTPETLQSIRENGHGLAGISGERIWMEVRKILTGNFAADLIHCMYDLDLARHIGIP 308 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 E L +L +V + Q ++L + ++D+ +L+M ++ + E R + Sbjct: 309 -PEADLQELHKVYQRSQSLHPHPVTILSAL----FKDENDVLTMEQRMRISAEERKTAL 362 >gi|289706703|ref|ZP_06503051.1| tRNA adenylyltransferase [Micrococcus luteus SK58] gi|289556623|gb|EFD49966.1| tRNA adenylyltransferase [Micrococcus luteus SK58] Length = 483 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 78/455 (17%), Positives = 147/455 (32%), Gaps = 57/455 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + + +VGG VRD + D+D T PD + + Sbjct: 24 VVELGRRFEAAGHELSLVGGPVRDLFLGRPSLDLDFTTDADPDASEAVGAGWADATWDVG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI ++TT R++ R +V F + D LRRDFT+NA+ Sbjct: 84 RRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFGDSLEDDLLRRDFTVNAMALRLPA 143 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D GG+ DL ++ G +D LR++R RF + G + + A Sbjct: 144 LELVDPFGGMQDLHAGVLRTPGTPEDSFSDDPLRMMRAARFASQLG-FAVAPEVEQAMTA 202 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 + + I+S+ER+ E+ KL+ +P + + G+ + ++ + L+ Sbjct: 203 MAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGLADHVLPELPALQLESDEHHRHK 262 Query: 246 ---------LSQVIEAEQVFEWK-IDSLLRFIVLISWQDKKSILSMAK------------ 283 L Q +E E + D +LR L+ K + K Sbjct: 263 DVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDVGKPATRRFEKGGAVTFRHHETV 322 Query: 284 ----------KFSLPREIRYFLISFFNCNFNQ---KTLSIPEIKKLFYLYGDKVMIAKLK 330 + + + + Y + ++ +L Sbjct: 323 GAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDAGWTDSAVRRYAHDAGDLLPRLH 382 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKP----------LFPLTGDDVVK-YGIPPGK 379 + + D+ L G ++ GI PG Sbjct: 383 ALTRSDVTTRNRRKAERLAHAYDDLERRIAEIAEAEELAAVRPDLDGQQIMALLGIRPGP 442 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 VG H + ++ + LR+ A Sbjct: 443 VVGRAYNHLLEWRLDEG-PHEPAEAEAELRRWWAE 476 >gi|326778131|ref|ZP_08237396.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces cf. griseus XylebKG-1] gi|326658464|gb|EGE43310.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Streptomyces cf. griseus XylebKG-1] Length = 487 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 83/453 (18%), Positives = 170/453 (37%), Gaps = 59/453 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 37 ADDLARRFQEAGFGLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 97 IAFGTVGSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVALPE 156 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GGL DL +R ++ G +D LR+LR RF A + + + + A + Sbjct: 157 KEFVDPYGGLKDLADRVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPEVVTAMTE 215 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 + I+S+ER+ E+NKLL +++P + + + G+ + ++ + L+ Sbjct: 216 MAARIDIVSAERVRDELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHHRHK 275 Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 L+ + +A + E D +LR L+ K K Sbjct: 276 DVYEHSLTVLEQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVGAKM 335 Query: 284 ------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 + E+ + + P +++L L Sbjct: 336 TKKRMTELKYSNELVKDVSKLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHKLTR 395 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL ++ L+ ++ + L G+++++ + PG Sbjct: 396 SDCTTRNKRKANALSRTYDGLEERIAQLKEQEELDSIRPD---LDGNEIMRILEVGPGPV 452 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 +G + + + ++ L++ A Sbjct: 453 IGKAYGFLLELRLERG-PMERDAAVAALKEWWA 484 >gi|15891938|ref|NP_359652.1| poly(A) polymerase [Rickettsia conorii str. Malish 7] gi|15619048|gb|AAL02553.1| poly(A) polymerase [Rickettsia conorii str. Malish 7] Length = 436 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 132/446 (29%), Positives = 205/446 (45%), Gaps = 80/446 (17%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ-------------------------- 46 ILSLLN+ ++ ++GG VRD+L+ N + + Sbjct: 17 KILSLLNEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDTERRIAMYINVREDSSTGST 75 Query: 47 -------------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 DIDIAT + P V I S + K IPT + +GTI + Sbjct: 76 YKLPLEASYPRDRLEKGSCDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNE 135 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLR 146 F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL + ++ DY G DL+ Sbjct: 136 KFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQ 195 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK LS ERI Sbjct: 196 QEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGNFKACKALKDGLKTLSRERIK 254 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 SE++K++ +K + M+ GI + IF +Q + EQ ++K++ + R+ Sbjct: 255 SEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRY 307 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFN----CNFNQKTLSIPEIKKLFYLYGD 322 +L+ Q + L + + + ++S N FN K + + YL Sbjct: 308 ALLLYCQKDLN-LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAA 366 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382 +++ L H + ++ +P F + G+D++ I KK+G Sbjct: 367 RII------------GKLNHSQVKEFILKYDALL---RPKFQVNGNDLLNMNIEK-KKIG 410 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408 L + K WI F+ S+ +L L Sbjct: 411 AKLEYLKNFWIEQDFKPSKLELLAKL 436 >gi|255326495|ref|ZP_05367577.1| tRNA adenylyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296535|gb|EET75870.1| tRNA adenylyltransferase [Rothia mucilaginosa ATCC 25296] Length = 474 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 96/460 (20%), Positives = 168/460 (36%), Gaps = 68/460 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIFSKTRYKV 70 D + L + +VGG VRD+L+ D D+ T P++ +I Sbjct: 12 PDAAELGELYRAAGFELYLVGGIVRDNLLDDGGHFTDFDLTTDATPEQSEQILRAWGEHT 71 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 YGTI +++TT R+++ +D R V F D AD +RRDFTINA+ A Sbjct: 72 WDIGKEYGTISARKNGVVYEVTTYRAEVYVSDSRKPTVEFGTDLSADLVRRDFTINAMAA 131 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+V+D GG+ DLR ++ ED LR++R RF A + + + Sbjct: 132 ALPSGEVVDLFGGVEDLRAGVLRTPRSPEESFSEDPLRMMRAARFAARFN-LEVAPEVFE 190 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241 A + ++I+S+ER+ E+ KL+EA P + + + G+ + ++ + Sbjct: 191 AMREMAGRIEIISAERVRDELMKLIEADYPRVGLNLLVDTGLADYVLPELPALRMEMDPA 250 Query: 242 ---------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMAK------ 283 SL + Q +E E + D +LRF L+ K K Sbjct: 251 HHHKDVYAHSLKVMEQAMEKETDEDGPCPAPDFILRFAALMHDIGKPKTRKFEKDGSVSF 310 Query: 284 ----------------KFSLPREIRYFLISFFNCN-----FNQKTLSIPEIKKLFYLYGD 322 + + + + + + +++ GD Sbjct: 311 LHHEVVGAKMVKKRMRALRFDNDTIKAVARLVELHMRFYGYRESGWTDSAVRRYVRDAGD 370 Query: 323 KVMI-------------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 ++ +L LA Y++L + L ++ + L G Sbjct: 371 QLERLHRVSRSDVTTRNRRLSRSLAEAYDDLERRIAE--LAAQEELDSIRPDLD--GGQI 426 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + GI PG VG ++ +E LL+ Sbjct: 427 MQILGITPGPVVGEAYKFLLNLRLDEGSLPEEEAKARLLQ 466 >gi|116623706|ref|YP_825862.1| metal dependent phosphohydrolase [Candidatus Solibacter usitatus Ellin6076] gi|116226868|gb|ABJ85577.1| metal dependent phosphohydrolase [Candidatus Solibacter usitatus Ellin6076] Length = 422 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 96/420 (22%), Positives = 164/420 (39%), Gaps = 42/420 (10%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + ++ +VGG VRD L+ +D DIAT PDR+M +F + +G I Sbjct: 1 MRGAGHQAYLVGGCVRDHLLGCKPKDYDIATDARPDRIMDLFPSSG----RVGAHFGVIL 56 Query: 82 IICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ-GKVIDY 138 + ++ T RSD DGR+ + V F D + D LRRDFTIN L D G+V+D+ Sbjct: 57 VRDVFDQVEVATFRSDHDYLDGRHPEQVRFECDPREDVLRRDFTINGLMLDPDTGRVLDF 116 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 V G DL+ ++ IGD + R ED+LR+LR RF A G I+ A + + Sbjct: 117 VDGQGDLKRGIVRAIGDPYARFREDHLRLLRAVRFAARLG-FEIEPATFDAIRRDHALIL 175 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 ++ ERI E+ ++L + G+ ++ +V + +DQ Q V+ Sbjct: 176 KVAMERIREELVRILTEGGARRGFELLDAAGMLADLLPEVAAMKGVDQPPQFHPEGDVWA 235 Query: 258 WK---------IDSLLRFIVLISWQDKKSILSMA--------------------KKFSLP 288 L L+ K +A + Sbjct: 236 HTLLLLEQLRNPTPTLALGALLHDVGKPPTFRVADRIRFDGHVEEGVRIAHAILTRLRFS 295 Query: 289 REIRYFLISFFNCNFNQKT---LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 RE + + + K + +K+ L + + ++ + L + + Sbjct: 296 REEIDQVEALVENHMRFKDVHHMKESTLKRFLRLPDFEEHLELHRLDVMSSNRRLENYEL 355 Query: 346 CFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 ++ +P +TG D++ G PG + IL + + + Q E +H Sbjct: 356 AR-RKLAEYSEKHLQPEPLVTGADLIGMGYQPGPQFSRILSVIEDAQLEGTIQTRGEAIH 414 >gi|288799639|ref|ZP_06405098.1| polyA polymerase family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332887|gb|EFC71366.1| polyA polymerase family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 475 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 91/463 (19%), Positives = 177/463 (38%), Gaps = 66/463 (14%) Query: 10 FHDSDLINILS-----LLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 +SDL IL+ L++K D + +VGG VRD + +DID+ V Sbjct: 4 LSNSDLAKILNQDIFHLISKAADALSLECYVVGGYVRDLFLERPSKDIDVVVVGSGIAVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 T + ++GT ++ + + R + +V + D Sbjct: 64 EKLKATLGRGAHLSVFRNFGTAQVKYKGIEVEFVGARRESYQRNSRKPIVEDGTLEDDQN 123 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL G+++D G+ DL + I+ + + +D LR+LR RF Sbjct: 124 RRDFTINALAVCLNSARFGELVDPFYGIEDLEDGIIRTPLEPNITFSDDPLRMLRCIRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A I+ + +KI+S ERI E+NK++ K P + +Y G+ + I Sbjct: 184 TQLNFF-IEDETFDALIENAERIKIISGERISDELNKIMLCKTPSKGFIDLYRCGLLQII 242 Query: 235 FLDVQEISL----------DQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDK-------- 275 ++ + + + +E D+L LR+ L+ K Sbjct: 243 LPELCALDIVETRNGRAHKNNFYHTLEVLDNIAKHTDNLWLRWGALLHDIGKPKSKRWEN 302 Query: 276 --------------KSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIP-----EIKK 315 K + M ++ LP + + ++ S + + ++ +++ Sbjct: 303 IAGWTFHNHNFIGAKMVPQMFRRLKLPLDAKMKYVQSMVDLHMRPIVIADDVVTDSAVRR 362 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLT 366 L GD + + + A + + F+ L + + + + Sbjct: 363 LINDAGDNI-DDLMTLCEADITTKNSMRKQRFLDNFRIVREKIEDLKERDYKRALQPVID 421 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+++++ +P G VG + K +++ +E L LL Sbjct: 422 GNEIMEMFNLPQGPAVGTLKQTLKNAVLDNVVPNEREALMELL 464 >gi|265756837|ref|ZP_06090825.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233623|gb|EEZ19243.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 500 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 175/460 (38%), Gaps = 58/460 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F++ I ++ + +VGG VRD + +DID+ + + F K + Sbjct: 35 FNNKIFKLISETADELGVECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGR 94 Query: 70 VIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++GT ++ + R + + VV + D RRDFTINA+ Sbjct: 95 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 154 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G+++D GL+DL+ RTI+ D +D LR++R RF ID Sbjct: 155 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 213 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241 A + K+ + I+S ERI E+NK+L A P + + G+ IF ++ + Sbjct: 214 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 273 Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS------------ 280 D +E D+L LR+ L+ K Sbjct: 274 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 333 Query: 281 ----------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKV 324 + +K LP E ++ + + ++ +++L + GD + Sbjct: 334 NFIGEKMIPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 393 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + + A + + F+ L+ L + + P+ G+++++ + Sbjct: 394 -DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFD 452 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413 + P +++G++ K ++ + L H+L+K + Sbjct: 453 LQPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 492 >gi|218262165|ref|ZP_03476724.1| hypothetical protein PRABACTJOHN_02398 [Parabacteroides johnsonii DSM 18315] gi|218223571|gb|EEC96221.1| hypothetical protein PRABACTJOHN_02398 [Parabacteroides johnsonii DSM 18315] Length = 476 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 94/459 (20%), Positives = 175/459 (38%), Gaps = 62/459 (13%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K FH I ++ ++ ++GG VRD ++ +DID+ + + + Sbjct: 12 ISAKAFHL-----ISEAADELGIEAYVIGGYVRDIFLHRPSKDIDVVAVGSGIELAKAVA 66 Query: 65 KT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 K R + ++GT ++ + R + T +V + D RRDF Sbjct: 67 KKLGRGAYLSVFKNFGTAQVKAGDLELEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDF 126 Query: 123 TINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINAL D+ G+++D GL D+ N I+ D +D LR++R RF + G Sbjct: 127 TINALALCLNKDRYGELVDPFDGLTDMDNLLIRTPLDPDITFSDDPLRMMRAVRFASQLG 186 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ID D A + K+ + I+S ERI E+NK++ + P + G+ IF ++ Sbjct: 187 FF-IDPDTFDAIERNKERISIISKERIVDELNKIVLSPKPSVGFDLLDRCGLLPLIFPEL 245 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKSILSMAKKF-- 285 + + + I + F + L LR+ L K + Sbjct: 246 CALKGVETKEGIGHKDNFAHTLMVLDRLSKTTDNLWLRWSALFHDIAKPVTKRFDPRLGW 305 Query: 286 --------------------SLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYL 319 LP E ++ + + LS E I++L + Sbjct: 306 TFHNHNFIGEKMIPGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFD 365 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDV 370 GD + +K+ A + + F+ L + + + P+TG+++ Sbjct: 366 AGDDI-DDLMKLCEADITSKNPEKVRRFLNNFQKVRSKLAAIEEKDRVRNFQPPVTGEEI 424 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ +G+PP + VG + K ++ E H + Sbjct: 425 METFGLPPSQPVGILKEAIKNAILDGVIPNEYEAAHAFM 463 >gi|237739984|ref|ZP_04570465.1| Poly(A) polymerase [Fusobacterium sp. 2_1_31] gi|229422001|gb|EEO37048.1| Poly(A) polymerase [Fusobacterium sp. 2_1_31] Length = 451 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 101/439 (23%), Positives = 180/439 (41%), Gaps = 49/439 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL LNK K IVGG++RD L+ L +DID T I + + +FS+ K T Sbjct: 14 IEILRKLNKYG-KGYIVGGSIRDILLGLKPKDIDFTTNIPYETLKDLFSEYNPK--ETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 ++G ++I + ++I R D + KV F D K D RRDF+INA+ Sbjct: 71 AFGVLRIRVNEIDYEIAKFREDNYEEKDGLKIVPEDNKVDFVDDIKEDLARRDFSINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G + ++ + Sbjct: 131 YNEADGIVDLYNGQKDIENKVINFVGNAEERIIEDPLRILRAFRFMSRLGFSSSEN-TIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K LK + ERI E +KLL +N N + M + G+ + I + + + Sbjct: 190 AIKKQKDLLKSIPEERITMEFSKLLLGENVKNTLTAMKDTGVLELIIPEFKATYDFEQHN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDK----------------------KSI 278 +F D LR+ L+ K Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELRYTALLHDIAKPLVQTFDENGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 + + LP ++ + + + ++ + KL G ++ ++ A + Sbjct: 310 RDILTRLKLPVKLIETVEDIIKKHMVLYRDVTDKKFNKLLSEMGYDNLLRLIEHCNADNG 369 Query: 338 N------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + N + + + + + L G D++ G G ++G I + Sbjct: 370 SKNNEVVNPENDLHERLKRAVEKQMQVTVNDLTLNGKDLIDMGFK-GTEIGKIKGELLDK 428 Query: 392 WINSSFQLSQEDLHHLLRK 410 +++ +E + +++ Sbjct: 429 YLSEEIPNEKEAMLAYVKE 447 >gi|281356278|ref|ZP_06242770.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Victivallis vadensis ATCC BAA-548] gi|281316970|gb|EFB00992.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Victivallis vadensis ATCC BAA-548] Length = 447 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 95/428 (22%), Positives = 173/428 (40%), Gaps = 42/428 (9%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 L + + +VGG+VRD L+ D D+ T+ P+ + ++F+ R S+G Sbjct: 24 RLREHGFAAGLVGGSVRDLLLGKVPSDFDLVTSAKPEELAQLFADFRA----VGASFGVS 79 Query: 81 KIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVID 137 I ++ T R + DGR+ + V +T D + D RRDFTINAL+ D +G+V D Sbjct: 80 LIGVGGVSLEVATAREERNYLDGRHPELVRYTADLECDVQRRDFTINALWYDPAEGEVCD 139 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 VGG++DL ++ +GDA R EDYLR+LR RF A + + A Sbjct: 140 CVGGIDDLERGVVRTVGDAGRRFNEDYLRMLRAVRFAARL-RFELFPETRRAIQALAPKA 198 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVF 256 L+ ERI +E+ ++L +P A+ +++ G+ + +V + ++Q + V Sbjct: 199 AGLAGERINAEVTRMLTGPDPARAVRMLFDTGLLAAVLPEVAALDGVEQPPEFHPEGDVL 258 Query: 257 EWKI---------DSLLRFIVLISWQDKKSIL----------------------SMAKKF 285 + D+ L + VL+ K + + Sbjct: 259 THTLLMLSHMACADANLAWSVLLHDISKPEARTVGEDGRARFYAHESMGAELAGKILDRL 318 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI--FLALHYNNLTHQ 343 R + + ++ KL L D +L++ + + L Sbjct: 319 HFSSADRDSITQAVRNHMRFASVRDMRAAKLRKLIADPNFPLELELHRLDCISCHGLMEC 378 Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 + ++ ++ H + P + G D+V G+ PG + +L + + +E Sbjct: 379 FVFLLDRLAAEPEHRRLPEPWVRGRDLVAAGVKPGPRFKTVLEEVFELQLAGELSTPEEA 438 Query: 404 LHHLLRKL 411 L L + Sbjct: 439 LETALERF 446 >gi|189462187|ref|ZP_03010972.1| hypothetical protein BACCOP_02869 [Bacteroides coprocola DSM 17136] gi|189431090|gb|EDV00075.1| hypothetical protein BACCOP_02869 [Bacteroides coprocola DSM 17136] Length = 501 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 89/449 (19%), Positives = 173/449 (38%), Gaps = 58/449 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT--SI 75 I ++ + +VGG VRD +N +DID+ + F + + Sbjct: 44 ISDTADELGLECYVVGGYVRDIFLNRPSKDIDVVVVGSGIEIAEAFGRKLGRGAHVSVFK 103 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131 ++GT ++ + R + + VV + D RRDFTINAL + Sbjct: 104 NFGTAQVKYHDLEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINALAVCLNKSR 163 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GGL+DL+ RTI+ D +D LR++R RF I+ + A Sbjct: 164 YGELVDPFGGLDDLKERTIRTPLDPDITFSDDPLRMMRCIRFATQLNFF-IEDETFDALE 222 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241 + ++ +KI+S ERI E+NK+L + P V + G+ + IF + + Sbjct: 223 RNRERIKIISRERIADELNKILLSPVPSKGFVDLDRCGLLELIFPEFVALQGVEVKNGRG 282 Query: 242 SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS-------------------- 280 D +E D+L LR+ L+ K Sbjct: 283 HKDNFYHTLEVVDNIAKVTDNLWLRWATLLHDIGKPRTKRWDSRIGWTFHNHNFVGEKMI 342 Query: 281 --MAKKFSLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIF 332 + +K LP E ++ + ++ E +++L + GD + + + Sbjct: 343 PDIFRKMKLPMNEKMKYVQKLVGLHMRPIVIADEEVTDSAVRRLLFEAGDDI-DDLMLLC 401 Query: 333 LALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + F+ L+ L + + P+ G +++K + + P +++G Sbjct: 402 EADITSKNEVRKQRFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGAEIMKVFNLQPCREIG 461 Query: 383 NILVHCKQEWINSSFQLSQEDL-HHLLRK 410 ++ K ++ + ++L+K Sbjct: 462 SLKSSIKDAILDGVIPNEHDAAFEYMLKK 490 >gi|302535590|ref|ZP_07287932.1| tRNA adenylyltransferase [Streptomyces sp. C] gi|302444485|gb|EFL16301.1| tRNA adenylyltransferase [Streptomyces sp. C] Length = 483 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 84/454 (18%), Positives = 165/454 (36%), Gaps = 59/454 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+L+ D+D T P+ V++I + Sbjct: 30 ADELGRRFQEAGFRLALVGGSVRDALLGRLGNDLDFTTDARPEAVLKIMRPWADSLWDVG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 90 IAFGTVGAQRDGFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMALALPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GGL DL ++ G +D LR+LR RF A + + + + A Sbjct: 150 QEFVDPHGGLEDLAAGVLRTPGTPEDSFSDDPLRMLRAARFAAQL-DFEVAPEVVSAMKA 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E+NKLL + +P + + + G+ + ++ + L++ Sbjct: 209 MSDRIEIVSAERVQGELNKLLLSAHPRKGLGLLVDTGLADRVLPELPALRLERDEHHRHK 268 Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA----------------- 282 L + +A + E D +LR L+ K Sbjct: 269 DVYDHSLIVLEQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHHHEVVGAKM 328 Query: 283 -----KKFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 E+ + + P + +L L Sbjct: 329 TKKRMTALKYSNEMVRDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLDRLHKLTR 388 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL ++ LQ ++ + L G+++ + I PG Sbjct: 389 SDCTTRNKRKANALSRTYDGLEERIAQLQEQEELDSIRPD---LNGNEIQQILEIGPGPL 445 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 VG + + + + +E L++ A+ Sbjct: 446 VGKAYAFLLELRLENG-PMDREAAVAALKEWWAA 478 >gi|254456611|ref|ZP_05070040.1| poly(A) Polymerase [Candidatus Pelagibacter sp. HTCC7211] gi|207083613|gb|EDZ61039.1| poly(A) Polymerase [Candidatus Pelagibacter sp. HTCC7211] Length = 424 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 113/401 (28%), Positives = 193/401 (48%), Gaps = 14/401 (3%) Query: 15 LINILSLLNKG--EDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVI 71 I +N + VGG VR ++ + DID+AT + P+ V K + Sbjct: 31 ANKIFDAINSYSENSEVRYVGGCVR-KIIKKEAIDDIDLATNLKPNEVCEALKKNKIDYY 89 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 T I +GTI + K+ ++IT+LR D++TDGR+AK+ F+ DWK D+ RRDF+IN++Y+D+ Sbjct: 90 ETGIEHGTITALIDKQKYEITSLRKDILTDGRHAKIEFSSDWKEDAERRDFSINSIYSDK 149 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G + D G DL I FIGD +RI EDYLRILR+ RFF +Y + + Sbjct: 150 NGNLFDPNNGKKDLEEGLINFIGDTENRIKEDYLRILRYVRFFINYSNHKHRPEIIKIIK 209 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + G+ LSSER+ E K+ +KN L + + IF + + + Sbjct: 210 RNIDGISKLSSERLLDEFKKITNSKNFLKLFEDDLSLELLYLIFPQFKNLENFKKLNSYA 269 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 +F LL +V+ + + L + ++ + SF+N N K + Sbjct: 270 KNNIFNIDFIFLLSLMVIDGTDNTEYFLYKFNISKIDQKRLKMINSFYNEGINIKKFTKK 329 Query: 312 EIKKLFYLYGDKVMIA--KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + K Y G++ +I KIF +++ ++ +L P+ P+T Sbjct: 330 NLNKYLYYNGNEAVIDIINFKIF-------KSNKVEKKLINLLEYYKDKVIPIIPITAKT 382 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ + IP GK +GN ++ W+N+ F++S + + +++ Sbjct: 383 LMNDFNIPEGKTLGNKFKSIEEIWVNNGFKISDKQVQKVIK 423 >gi|283458980|ref|YP_003363629.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rothia mucilaginosa DY-18] gi|283135044|dbj|BAI65809.1| tRNA nucleotidyltransferase/poly(A) polymerase [Rothia mucilaginosa DY-18] Length = 474 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 96/460 (20%), Positives = 167/460 (36%), Gaps = 68/460 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIFSKTRYKV 70 D + L + +VGG VRD+L+ D D+ T P++ +I Sbjct: 12 PDAAELGELYRAAGFELYLVGGIVRDNLLDDGGHFTDFDLTTDATPEQSEQILRGWGEHT 71 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 YGTI +++TT R+++ +D R V F D AD +RRDFTINA+ A Sbjct: 72 WDIGKEYGTISARKNGVVYEVTTYRAEVYVSDSRKPTVEFGTDLSADLVRRDFTINAMAA 131 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+V+D GG+ DLR ++ ED LR++R RF A + + + Sbjct: 132 ALPSGEVVDLFGGVEDLRAGVLRTPRSPEESFSEDPLRMMRAARFAARFN-LEVAPEVFE 190 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241 A + ++I+S+ER+ E+ KL+EA P + + + G+ + ++ + Sbjct: 191 AMREMAGRIEIISAERVRDELVKLIEADYPRVGLNLLVDTGLADYVLPELPALRMEMDPA 250 Query: 242 ---------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMAK------ 283 SL + Q +E E E D +LRF L K K Sbjct: 251 HHHKDVYAHSLKVMEQAMEKETDDEGPCPAPDFILRFAALTHDIGKPKTRKFEKDGSVSF 310 Query: 284 ----------------KFSLPREIRYFLISFFNCN-----FNQKTLSIPEIKKLFYLYGD 322 + + + + + + +++ GD Sbjct: 311 LHHEVVGAKMVKKRMRALRFDNDTIKAVARLVELHMRFYGYRESGWTDSAVRRYVRDAGD 370 Query: 323 KVMI-------------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 ++ +L LA Y++L + L ++ + L G Sbjct: 371 QLERLHRVSRSDVTTRNRRLSRSLAEAYDDLERRIAE--LAAQEELDSIRPDLD--GGQI 426 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + GI PG VG ++ +E L++ Sbjct: 427 MQILGIAPGPVVGEAYKFLLNLRLDEGSLPEEEAKARLVQ 466 >gi|294774980|ref|ZP_06740510.1| HD domain protein [Bacteroides vulgatus PC510] gi|294451189|gb|EFG19659.1| HD domain protein [Bacteroides vulgatus PC510] Length = 472 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 175/460 (38%), Gaps = 58/460 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F++ I ++ + +VGG VRD + +DID+ + + F + + Sbjct: 7 FNNKIFKLISETADELGLECYVVGGYVRDIFLKRPSKDIDVVVVGSGIEMAQAFGRKLGR 66 Query: 70 VIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++GT ++ + R + + VV + D RRDFTINA+ Sbjct: 67 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 126 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G+++D GL+DL+ RTI+ D +D LR++R RF ID Sbjct: 127 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 185 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241 A + K+ + I+S ERI E+NK+L A P + + G+ IF ++ + Sbjct: 186 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 245 Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS------------ 280 D +E D+L LR+ L+ K Sbjct: 246 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 305 Query: 281 ----------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKV 324 + +K LP E ++ + + ++ +++L + GD + Sbjct: 306 NFIGEKMVPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 365 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + + A + + F+ L+ L + + P+ G+++++ + Sbjct: 366 -DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFD 424 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413 + P +++G++ K ++ + L H+L+K + Sbjct: 425 LQPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 464 >gi|227506205|ref|ZP_03936254.1| possible tRNA adenylyltransferase [Corynebacterium striatum ATCC 6940] gi|227197229|gb|EEI77277.1| possible tRNA adenylyltransferase [Corynebacterium striatum ATCC 6940] Length = 467 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 91/449 (20%), Positives = 173/449 (38%), Gaps = 61/449 (13%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 + ++ +VGG+VRD+L++ D+D T P+ V I V T I + Sbjct: 21 LAEQFRARGNRLYLVGGSVRDALLSRLGHDLDFTTDARPEVVQEILDGWAETVWDTGIDF 80 Query: 78 GTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQ---G 133 GT+ + + + +ITT RSD D R +VVF + D +RRDF +NA+ + + Sbjct: 81 GTVSAVYKGQQIEITTFRSDSYDGDSRNPEVVFGDSLEGDLVRRDFKVNAMAIELKEDGY 140 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + D +GGL DL+N+ + +D LR+LR RF + E ++ A + Sbjct: 141 EFHDPMGGLTDLKNKILDTPDKPEISFHDDPLRMLRAARFASQL-EFDVAERVKTAMTEM 199 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------------ 241 ++ ++ ER+ E++KL+ KNP I + + GI IF ++ + Sbjct: 200 AGEIRRITVERVQVELDKLMLGKNPETGIELLVDTGILDHIFPEIPALRMAPDEHAQHKD 259 Query: 242 ----SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------------- 277 SL L Q I+ E+ + D +LR+ L+ K Sbjct: 260 VYAHSLTVLRQAIDQEE----EPDLILRWAALLHDVGKPDTRDTTDGKVTFHHHEVVGAK 315 Query: 278 -ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKIFL 333 + +K P+ + + + Y+ ++ +L + Sbjct: 316 LVRKRLRKLKYPKATIEAIGQLVYLHMRFHGFGEGQWTDSAVRRYVTDAGDLLPRLHKIV 375 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVG 382 + + + + + L G+++++ G+ PG +VG Sbjct: 376 RADCTTRNAKKARRLQRTYDHLEERIAEIAAKEDLARVRPDLDGNEIMEILGLNPGPEVG 435 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + K+ + L ++ LR+ Sbjct: 436 QAWSYLKELRLEEG-PLERDVAIAKLREW 463 >gi|119953484|ref|YP_945693.1| poly(A) polymerase [Borrelia turicatae 91E135] gi|119862255|gb|AAX18023.1| poly(A) polymerase [Borrelia turicatae 91E135] Length = 407 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 106/394 (26%), Positives = 183/394 (46%), Gaps = 24/394 (6%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + D+I I + NK + +VGGA+RD L+ D D T P+ +M++F Sbjct: 5 INTKDIIKISKIFNKHNYEFFLVGGALRDLLLKKIPYDFDFTTNATPEEIMQLFPNN--- 61 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINAL 127 + T I +GTI II KK F++TT R D+ + + A + FT++ D RRDFTIN++ Sbjct: 62 -VKTGIKHGTISIIFNKKIFEVTTYRIDIDYENKRAPKNIKFTKNLNEDLQRRDFTINSI 120 Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + ++ID G DL + I+ IGD + R ED LRILR RF + + ID + Sbjct: 121 AMNILNYEIIDCYKGKQDLNKKIIRCIGDPNKRFEEDALRILRAARFASTL-DFTIDKNT 179 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQEISLDQ 245 L++ K + LS ERI +E KLLE KNP+ I ++ FK F +++ + + Sbjct: 180 LISMKYKKTNILFLSKERINNEFIKLLEGKNPIKGINYLQKINFFKYFFNIEINK----K 235 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 L I ++ + +++ F + +D ++ K + ++ + Sbjct: 236 LKNKITLLNKNKFYLKAMVIFTI---KKDISCLIENLKSLRFSNKDIKLILLYKTVINEI 292 Query: 306 KTL---SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWK 359 TL + +I+ L + L I+ AL + + + ++L D + K Sbjct: 293 NTLRIKKLHDIRILLSKATRENYKEILDIYKALKGKDHKLKFIINKIRRKKLLKDPLSLK 352 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 + G+D+ + K +G IL + +E + Sbjct: 353 --ELKINGNDIKNLKLTENKNIGKILDYLLREVL 384 >gi|182437476|ref|YP_001825195.1| putative RNA nucleotidyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465992|dbj|BAG20512.1| putative RNA nucleotidyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 480 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 83/453 (18%), Positives = 170/453 (37%), Gaps = 59/453 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P+ V++I V Sbjct: 30 ADDLARRFQEAGFGLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADAVWEVG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ ++TT RS+ R +V + + D +RRDFT+NA+ + Sbjct: 90 IAFGTVGSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEDDLVRRDFTVNAMAVALPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GGL DL +R ++ G +D LR+LR RF A + + + + A + Sbjct: 150 KEFVDPYGGLKDLADRVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAPEVVTAMTE 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 + I+S+ER+ E+NKLL +++P + + + G+ + ++ + L+ Sbjct: 209 MAARIDIVSAERVRDELNKLLLSQHPRKGLGLLVDTGLAAHVLPELPALRLESDEHHRHK 268 Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------------- 283 L+ + +A + E D +LR L+ K K Sbjct: 269 DVYEHSLTVLEQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVGAKM 328 Query: 284 ------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 + E+ + + P +++L L Sbjct: 329 TKKRMTELKYSNELVKDVSKLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHKLTR 388 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL ++ L+ ++ + L G+++++ + PG Sbjct: 389 SDCTTRNKRKANALSRTYDGLEERIAQLKEQEELDSIRPD---LDGNEIMRILEVGPGPV 445 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 +G + + + ++ L++ A Sbjct: 446 IGKAYGFLLELRLERG-PMERDAAVAALKEWWA 477 >gi|311742149|ref|ZP_07715959.1| tRNA adenylyltransferase [Aeromicrobium marinum DSM 15272] gi|311314642|gb|EFQ84549.1| tRNA adenylyltransferase [Aeromicrobium marinum DSM 15272] Length = 482 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 94/463 (20%), Positives = 169/463 (36%), Gaps = 65/463 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + L + +VGG VRD+L+ + D D T+ PD+V ++ + + Sbjct: 24 LARVGELFAAAGHEIALVGGPVRDALLGRTGNDWDFTTSATPDQVEQVVAGWADALWDVG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI + +ITT R+D G R V F R D RRDF +NA+ Sbjct: 84 REFGTIALRKGDDQLEITTYRTDAYEAGSRKPAVAFGRTLSGDLSRRDFAVNAMAVRLPG 143 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+ +D GGL DL +R ++ A +D LR++R RF A G + + A Sbjct: 144 GEFVDEFGGLADLADRVLRTPVTAQQSFDDDPLRMMRAARFVAQLG-FTAAPEVVAAMTA 202 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 L I+S+ERI E++KL+ +P+ + + G+ + ++ + L++ Sbjct: 203 MADRLAIVSAERIRDELDKLVCGADPVAGLRLLVESGLADRMLPELPALRLERDEHHRHK 262 Query: 246 ---------LSQVIEAEQVFE-----WKIDSLLRFIVLISWQDKKSILSMA--------- 282 L Q I E E + D ++R L+ K Sbjct: 263 DVYEHSLIVLEQAIALEGRLESGDGPPRPDLVIRLAALLHDIGKPRTRRFQPGGTVTFHH 322 Query: 283 -------------KKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKV 324 K ++ + + + +++ GD+ Sbjct: 323 HDVVGAKLTRKRMKALRYSNDVTDAVCRLVELHLRFHGYGSGEWTDAAVRRYVRDAGDQ- 381 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPLTGDDVVK-Y 373 + +L I + + + VL++ L G+ +++ Sbjct: 382 -LERLHILTRADCTTRNARKAARLQRTYDELEERIAVLAEAEELGAIRPDLDGNQIMEVL 440 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+PPG++VG ++ L +E LR A+ Sbjct: 441 GVPPGREVGAAYQFLLDLRMDRG-PLGEEQATEALRAWWAARS 482 >gi|229160586|ref|ZP_04288581.1| CCA-adding enzyme [Bacillus cereus R309803] gi|228622996|gb|EEK79827.1| CCA-adding enzyme [Bacillus cereus R309803] Length = 370 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 83/377 (22%), Positives = 168/377 (44%), Gaps = 17/377 (4%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRS 96 RD +++ + DIDIAT+ LP+ VM IF + +P + +GT+ ++ + +++TT R+ Sbjct: 2 RDLIIDRPIGDIDIATSALPEEVMGIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRT 57 Query: 97 DL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIG 154 + D R V F R + D RRDFT+NA+ ++G+++D G ++ + I +G Sbjct: 58 ESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNAIAMTEEGEMVDLFAGQEAIQKKEIVTVG 117 Query: 155 DAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 +A R ED LR++R RF + G +++ A L+ ++ ERI E KLL Sbjct: 118 NAADRFQEDALRMMRGIRFVSTLG-FALETKTKQAIEAYGHLLEHIAIERITVEFEKLLT 176 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE-QVFEWKIDSLLRFIVLISWQ 273 + + + +F + ++S ++L + + E FE I++ F+ I + Sbjct: 177 GTYCVKGLQELVETKLFSHL--PYLQMSEERLLKATQYEWDSFETDIEAWAFFLYCIGEE 234 Query: 274 DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 L +++ + +++ +K + L Y G + +++ Sbjct: 235 HPSVFL---RQWKFSNKKIKDIVAILLAIRTRKEKDWDTV--LLYKTGIHIAEMAERVYE 289 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP-PGKKVGNILVHCKQEW 392 A + + + + + +TG+D++ + PG V IL ++ Sbjct: 290 A-MIESYDRTAVKRVQTLFQTLPIKSRQEMNVTGNDLLNWANKNPGPWVAEILQKIEEAI 348 Query: 393 INSSFQLSQEDLHHLLR 409 I + +E + L+ Sbjct: 349 IQGNVVNEKERIREWLQ 365 >gi|157827883|ref|YP_001494125.1| poly(A) polymerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932572|ref|YP_001649361.1| poly(A) polymerase [Rickettsia rickettsii str. Iowa] gi|157800364|gb|ABV75617.1| poly(A) polymerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907659|gb|ABY71955.1| poly(A) polymerase [Rickettsia rickettsii str. Iowa] Length = 436 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 132/446 (29%), Positives = 205/446 (45%), Gaps = 80/446 (17%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ-------------------------- 46 ILSLLN+ ++ ++GG VRD+L+ N + + Sbjct: 17 KILSLLNEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDTERRIAMYINVREDSSTRST 75 Query: 47 -------------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 DIDIAT + P V I S + K IPT + +GTI + Sbjct: 76 YKLPLEASYPRDRLEKGSRDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNE 135 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLR 146 F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL + ++ DY G DL+ Sbjct: 136 KFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQ 195 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK LS ERI Sbjct: 196 QEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGSFKACKALKDGLKTLSRERIK 254 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 SE++K++ +K + M+ GI + IF +Q + EQ ++K++ + R+ Sbjct: 255 SEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRY 307 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFN----CNFNQKTLSIPEIKKLFYLYGD 322 +L+ Q + L + + + ++S N FN K + + YL Sbjct: 308 ALLLYCQKDLN-LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAA 366 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVG 382 +++ L H + ++ +P F + G+D++ I KK+G Sbjct: 367 RII------------GKLNHSQVKEFILKYDALL---RPKFQVNGNDLLNMNIEK-KKIG 410 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408 L + K WI F+ S+ +L L Sbjct: 411 AKLEYLKNFWIEQDFKPSKLELLAKL 436 >gi|37680945|ref|NP_935554.1| polyA polymerase [Vibrio vulnificus YJ016] gi|37199695|dbj|BAC95525.1| polyA polymerase [Vibrio vulnificus YJ016] Length = 463 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + +L L+ + +VGG VRD L+ S +D DIAT P+++ ++F Sbjct: 39 ISRKQISD-HALKVLYRLHGAGFDAFLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFR 97 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ ++ ++ T R +G + Sbjct: 98 NCRL----IGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTID 153 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 154 EDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIRF 213 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+ D + L+ + + R++ E KLL++ + L M +F++ Sbjct: 214 AAKL-DFDIEEDTAAPIEEMAHLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 272 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F + + S +AEQ+ + +DS Sbjct: 273 MFPAISAYFTEDYSS--KAEQMLDLVLDS 299 >gi|239980804|ref|ZP_04703328.1| RNA nucleotidyltransferase [Streptomyces albus J1074] gi|291452663|ref|ZP_06592053.1| RNA nucleotidyltransferase [Streptomyces albus J1074] gi|291355612|gb|EFE82514.1| RNA nucleotidyltransferase [Streptomyces albus J1074] Length = 488 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 85/447 (19%), Positives = 166/447 (37%), Gaps = 66/447 (14%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++ + +VGG+VRD+L+ D+D T P++V+R+ V Sbjct: 27 SPAADDLARRFEEAGHSLALVGGSVRDALLGRLGNDLDFTTDARPEQVLRLVRPWADAVW 86 Query: 72 PTSISYGTIK-----IICRKK---YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDF 122 I++GT+ ++ ++ +ITT RS+ R +V + + D +RRDF Sbjct: 87 EVGIAFGTVGCQKRAVVEGEEVTFEIEITTYRSEAYDRASRKPEVSYGDSIEDDLVRRDF 146 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NA+ Q ID GGL DL + ++ G +D LR++R RF A + + Sbjct: 147 TVNAMAVALPQKTFIDPYGGLEDLSAQVLRTPGTPEASFSDDPLRMMRAARFAAQL-DFD 205 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + + A + + I+S+ER+ E+NKLL + +P + + + G+ + ++ E+ Sbjct: 206 VAPEVVAAMTAMAERITIVSAERVRDELNKLLLSTHPRKGLTLLVDTGLAAHVLPELPEL 265 Query: 242 SLDQ-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK----- 283 L+ L+ + +A + E D LR L+ K K Sbjct: 266 RLESDEHHRHKDVYEHSLTVLEQAIDLEEDGPDLTLRLAALLHDIGKPRTRRFEKDGRVS 325 Query: 284 -----------------KFSLPREIRYFLISFFNCNFNQKTLSI---------------- 310 E+ + + Sbjct: 326 FHHHEVVGAKMVKKRMTALKYANELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAG 385 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 P++ +L L + AL ++ LQ ++ + L G+ + Sbjct: 386 PQLSRLHKLTRSDCTTRNKRKAAALSRAYDGLEERIAQLQEQEELDAIRPD---LDGNQI 442 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSS 396 ++ G+ PG +G + + + Sbjct: 443 MQLLGVGPGPVIGKAYAFLLDQRLENG 469 >gi|294809798|ref|ZP_06768482.1| HD domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294443038|gb|EFG11821.1| HD domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 474 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 89/463 (19%), Positives = 175/463 (37%), Gaps = 57/463 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + F + I + + +VGG VRD + +DID+ + Sbjct: 1 MTQEELKQHFSEPIFGQIAETADALGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMA 60 Query: 61 RIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K + ++GT ++ R + R + +V + D Sbjct: 61 EALGKRLGRGAHVSVFKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQN 120 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL G+++D GG+ D++ +TI+ D +D LR++R RF Sbjct: 121 RRDFTINALAVCLNKARFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFA 180 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 G ID D + + K+ ++I+S ERI E+NK++ + P + + G+ I Sbjct: 181 TQLGFY-IDDDTFESLCRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLPLI 239 Query: 235 FLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS------------ 271 F + + D +E K D+L LR+ L+ Sbjct: 240 FPEFAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKRWEP 299 Query: 272 ----------WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKK 315 + +K I + +K LP E ++ + + ++ +++ Sbjct: 300 KAGWTFHNHNFIGEKMIPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRR 359 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L + GD + + + A + + F+ L+ L + + P++ Sbjct: 360 LLFEAGDDI-DDLMMLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVS 418 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 GEEIMEIFGLEPCREVGVLKSAIKDAILDGVIPNEYEAAHAFM 461 >gi|293371097|ref|ZP_06617634.1| HD domain protein [Bacteroides ovatus SD CMC 3f] gi|292633755|gb|EFF52307.1| HD domain protein [Bacteroides ovatus SD CMC 3f] Length = 474 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 89/463 (19%), Positives = 173/463 (37%), Gaps = 57/463 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + F + I + + +VGG VRD + +DID+ + Sbjct: 1 MTQEELKQHFSEPIFGQIAETADTLGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMA 60 Query: 61 RIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K + ++GT ++ R + R + +V + D Sbjct: 61 EALGKQLGRGAHVSVFKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQN 120 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL G+++D GGL D++ +TI+ D +D LR++R RF Sbjct: 121 RRDFTINALAVCLNKARFGELVDPFGGLEDMKEKTIRTPLDPDITFSDDPLRMMRCIRFA 180 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 G ID D + + K+ ++I+S ERI E+NK++ + P + + G+ I Sbjct: 181 TQLGFY-IDDDTFESLCRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLLSLI 239 Query: 235 FLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS--- 280 F + + D +E K D+L LR+ L+ K + Sbjct: 240 FPEFAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEP 299 Query: 281 -------------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKK 315 + +K LP E ++ + + ++ +++ Sbjct: 300 KAGWTFHNHNFIGEKMIPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRR 359 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L + GD + + + A + + F+ L+ L + + P++ Sbjct: 360 LLFEAGDDI-DDLMMLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQPPVS 418 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 GEEIMEIFGLEPCREVGVLKSAIKDAILDGVIPNEYEAAHAFM 461 >gi|298385155|ref|ZP_06994714.1| polyA polymerase family protein [Bacteroides sp. 1_1_14] gi|298262299|gb|EFI05164.1| polyA polymerase family protein [Bacteroides sp. 1_1_14] Length = 477 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 176/466 (37%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q ++F + +I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQYFSEPIFGHIAETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ + R + +V + Sbjct: 61 AMAEALGKRLGRGAHVSVFKNFGTAQVKYNGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINA+ G+++D GG+ D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINAMAVCLNKARFGELVDPFGGMADMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF ID D + + K ++I+S ERI E+NK++ + P V + G+ Sbjct: 181 RFATQLNFY-IDDDTFESLCRNKDRIEIISRERIADELNKIILSPIPSKGFVELERSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS 280 IF ++ + D +E K D+L LR+ L+ K + Sbjct: 240 PLIFPELAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKR 299 Query: 281 ----------------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 PVSGEEIMETFGLQPCREVGALKSAIKDAILDGVIPNEYEAAHAFM 464 >gi|257452134|ref|ZP_05617433.1| Poly(A) polymerase [Fusobacterium sp. 3_1_5R] Length = 444 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 104/432 (24%), Positives = 191/432 (44%), Gaps = 40/432 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ IL L K + +VGG+VRD L+ V D D T + + + +IFSK Y I Sbjct: 16 EKVLYILEELEKYG-EGYLVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK--YFCIE 72 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 T ++G +++ + F+I + RS+ +DGR + V+F + + D RRDF+INA+ +Q Sbjct: 73 TGKAFGVLRLRIDGEEFEIASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSINAMAYNQ 132 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + ++DY DL N+ I+FIG+ RI ED LRI+R FRF + G +++S+ A + Sbjct: 133 EKGLLDYYDAQKDLENKVIRFIGNPRERIQEDGLRIMRAFRFMSQLG-FSLESNTKKAIM 191 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQV 249 + ++ L ++ RI E NKL+ + + M G+ + I ++ + S D Sbjct: 192 EEREMLGKIAKSRITEEWNKLILGDFVVETLEEMKETGVLELILPSLKSLYHSYDLWEHT 251 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK------------------------F 285 ++ + +D LR + K ++ +K Sbjct: 252 MQVVKSVPKDLD--LRLAAIFHDIGKPLTKTIDEKTGYYHFYGHEKKGAERIRSILQEEL 309 Query: 286 SLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-NLTHQ 343 + R + + Q+ S IKKL +G + +K+ +A + NL Sbjct: 310 EESNKTRKEVEFLIENHMILQRNSSEKGIKKLISHFGIERTEKLIKLSIADNLGKNLQQL 369 Query: 344 DTCFILQVLSDIIHWKK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399 + + I+ +K + G ++K G GK++ I + +E + + Sbjct: 370 RENNVADLFYKIVEKQKIPTLQELAIDGFALMKLGYQ-GKEIQKIKEYLLEEVLEGKIEN 428 Query: 400 SQEDLHHLLRKL 411 + L ++L Sbjct: 429 KETALLSKAKEL 440 >gi|317058679|ref|ZP_07923164.1| poly(a) polymerase [Fusobacterium sp. 3_1_5R] gi|313684355|gb|EFS21190.1| poly(a) polymerase [Fusobacterium sp. 3_1_5R] Length = 438 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 104/432 (24%), Positives = 191/432 (44%), Gaps = 40/432 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ IL L K + +VGG+VRD L+ V D D T + + + +IFSK Y I Sbjct: 10 EKVLYILEELEKYG-EGYLVGGSVRDILLGREVHDFDFCTNLSYETLKQIFSK--YFCIE 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ 131 T ++G +++ + F+I + RS+ +DGR + V+F + + D RRDF+INA+ +Q Sbjct: 67 TGKAFGVLRLRIDGEEFEIASFRSEKGSDGRRPEEVIFVKRIEEDLARRDFSINAMAYNQ 126 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + ++DY DL N+ I+FIG+ RI ED LRI+R FRF + G +++S+ A + Sbjct: 127 EKGLLDYYDAQKDLENKVIRFIGNPRERIQEDGLRIMRAFRFMSQLG-FSLESNTKKAIM 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQV 249 + ++ L ++ RI E NKL+ + + M G+ + I ++ + S D Sbjct: 186 EEREMLGKIAKSRITEEWNKLILGDFVVETLEEMKETGVLELILPSLKSLYHSYDLWEHT 245 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK------------------------F 285 ++ + +D LR + K ++ +K Sbjct: 246 MQVVKSVPKDLD--LRLAAIFHDIGKPLTKTIDEKTGYYHFYGHEKKGAERIRSILQEEL 303 Query: 286 SLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-NLTHQ 343 + R + + Q+ S IKKL +G + +K+ +A + NL Sbjct: 304 EESNKTRKEVEFLIENHMILQRNSSEKGIKKLISHFGIERTEKLIKLSIADNLGKNLQQL 363 Query: 344 DTCFILQVLSDIIHWKK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQL 399 + + I+ +K + G ++K G GK++ I + +E + + Sbjct: 364 RENNVADLFYKIVEKQKIPTLQELAIDGFALMKLGYQ-GKEIQKIKEYLLEEVLEGKIEN 422 Query: 400 SQEDLHHLLRKL 411 + L ++L Sbjct: 423 KETALLSKAKEL 434 >gi|332799849|ref|YP_004461348.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tepidanaerobacter sp. Re1] gi|332697584|gb|AEE92041.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tepidanaerobacter sp. Re1] Length = 444 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 101/446 (22%), Positives = 181/446 (40%), Gaps = 53/446 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S + I + L ++ +VGG +RD +MN D DIAT+ P+ + +F + P Sbjct: 8 SAIKKICNKLRASGFEAYVVGGTIRDLIMNRQNSDFDIATSAFPNEIKSVFPNAK----P 63 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ- 131 ++GT+ +I +IT R+D GR VF D RRDFTIN++ D Sbjct: 64 YG-NFGTMLVIADGFKVEITPFRNDA--PGRKPDYVFGGSIYTDLARRDFTINSIAYDPI 120 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 ++ID G+ D++ IK G RI ED LR +R RF A G +ID+ L A Sbjct: 121 DDELIDPFDGIKDIKKGVIKCTGST-RRIWEDPLRAMRAARFQAQLG-FSIDASTLYALK 178 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--------ISL 243 K L +S ERI E+ ++L A + +V + + I ++ + Sbjct: 179 SHAKELTGVSQERIRDELTRILTADYNFDGLVTLVITDLMNYIIPELMAGMGVMHSNKPV 238 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISW---------------------QDKKSILSMA 282 D L + A +V + LR L+ + + + Sbjct: 239 DVLEHNLIACKVIRNTLP--LRLAALLHDISKPETAVNCEEGLRFPKHQIESAAAAREIL 296 Query: 283 KKFSLPREIRYFLISFFNCN--FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 ++ + +I + F + S+ + ++L G + + + + +A + Sbjct: 297 QRLRFDNKTIKKVILLIENHMFFYTENSSLADARRLISKVGWENIYNLIDLRVADKIASG 356 Query: 341 THQDTCFILQVL---------SDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQ 390 + L+ L ++ +TG+D++ + GI PG +VG IL Sbjct: 357 FDRVYSPGLKKLIMDIEIIKNEQCGDYQIKDLAVTGEDIMSELGISPGPQVGQILNILLD 416 Query: 391 EWINSSFQLSQEDLHHLLRKLIASSQ 416 + I + ++ L + + +A+ Q Sbjct: 417 KVIENPSLNNKAALLEIAKTTLAAEQ 442 >gi|150004215|ref|YP_001298959.1| putative polyA polymerase [Bacteroides vulgatus ATCC 8482] gi|149932639|gb|ABR39337.1| putative polyA polymerase [Bacteroides vulgatus ATCC 8482] Length = 472 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 176/460 (38%), Gaps = 58/460 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--R 67 F++ I ++ + +VGG VRD + +DID+ + + F + R Sbjct: 7 FNNKIFKLISETADELGLECYVVGGYVRDIFLKRPSKDIDVVVVGSGIEMAQAFGRKLGR 66 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + ++GT +I + R + + VV + D RRDFTINA+ Sbjct: 67 GARVSVFKNFGTAQIKYHDTEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRDFTINAM 126 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G+++D GL+DL+ RTI+ D +D LR++R RF ID Sbjct: 127 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 185 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241 A + K+ + I+S ERI E+NK+L A P + + G+ IF ++ + Sbjct: 186 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 245 Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS------------ 280 D +E D+L LR+ L+ K Sbjct: 246 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 305 Query: 281 ----------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKV 324 + +K LP E ++ + + ++ +++L + GD + Sbjct: 306 NFIGEKMVPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 365 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + + A + + F+ L+ L + + P+ G+++++ + Sbjct: 366 -DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFD 424 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413 + P +++G++ K ++ + L H+L+K + Sbjct: 425 LQPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 464 >gi|227502218|ref|ZP_03932267.1| possible tRNA adenylyltransferase [Corynebacterium accolens ATCC 49725] gi|227077042|gb|EEI15005.1| possible tRNA adenylyltransferase [Corynebacterium accolens ATCC 49725] Length = 478 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 91/454 (20%), Positives = 176/454 (38%), Gaps = 59/454 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ + +VGG+VRD+L+ D+D T P+ V I + V T I+Y Sbjct: 29 LVEKFSARGHALYLVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIAY 88 Query: 78 GTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQ 132 GT+ + + + +ITT RSD R +V++ + D +RRDF +NA+ AD Sbjct: 89 GTVSAVYKGQQIEITTFRSDSYDGQSRNPEVIYGDSLEGDLVRRDFKVNAMAIELLADAT 148 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D +GGL+D+ N+ + +D LR+LR RF + E ++ + A Sbjct: 149 FEFHDPLGGLHDVANKVLDTPDKPEISFHDDPLRMLRAARFASQL-EFHVADRVVAAMRD 207 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 ++ ++ ER+ E++KL+ K P + I + N GI IF ++ + + Sbjct: 208 MAAEIQRITVERVQVELDKLMCGKAPWDGIDLLVNTGIADYIFPEIPALRMTTDEHAQHK 267 Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------I 278 L + +A E D +LR+ L+ K Sbjct: 268 DVYAHSLKVLRQAMDQEEDGPDLVLRWAALLHDIGKPDTFDNTDGKVSFHHHEVVGAKLT 327 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 +K P+ + + + + +++ GD ++ +L + Sbjct: 328 RKRLRKLKYPKATTEDIGQLVYLHMRFHGFGENQWTDSAVRRYVNDAGD--LLPRLHKLV 385 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVG 382 + + + + + L G+++++ G+ PG +VG Sbjct: 386 RADCTTRNAKKARRLQRTYDQLEERIEEIGRKEDLARVRPDLDGNEIMEILGLSPGPEVG 445 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + K+ + L +E+ LR+ S Q Sbjct: 446 QAWSYLKEMRLEYG-PLEREEAIAKLRQWWESKQ 478 >gi|224536185|ref|ZP_03676724.1| hypothetical protein BACCELL_01051 [Bacteroides cellulosilyticus DSM 14838] gi|224522198|gb|EEF91303.1| hypothetical protein BACCELL_01051 [Bacteroides cellulosilyticus DSM 14838] Length = 476 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 87/463 (18%), Positives = 174/463 (37%), Gaps = 61/463 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT- 66 + F D I ++ + +VGG VRD + +DID+ + K Sbjct: 11 QHFSDDIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIEMAEALGKCL 70 Query: 67 -RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 R + ++GT ++ R + R + +V + D RRDFTIN Sbjct: 71 GRGAHVAVFKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTIN 130 Query: 126 ALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL + G+++D GG+ DL+ +TI+ D +D LR++R RF Sbjct: 131 ALAVCLNQSRFGELVDPFGGIEDLKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID + + + + I+S ERI E+NK+L + P + + G+ IF ++ + Sbjct: 190 IDDATFESLCRNCERISIISKERIAEELNKILLSPVPSKGFIDLDRSGLLPLIFPELAAL 249 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS------------------- 271 D +E K D+L LR+ L+ Sbjct: 250 QGVETRNGRAHKDNFYHTLEVLDNISRKTDNLWLRWAALLHDIAKPVTKRWEPRAGWTFH 309 Query: 272 ---WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + +K + + ++ LP E ++ + + ++ +++L + GD Sbjct: 310 NHNFIGEKMVPEIFRRMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G++++K Sbjct: 370 DI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRVRNFQPPISGEEIMKT 428 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQED----LHHLLRKL 411 + + P ++VG + K ++ E + K+ Sbjct: 429 FNLEPCQQVGTLKSAIKDAILDGVIPNEYEAARTFMLQRAEKM 471 >gi|149278885|ref|ZP_01885020.1| tRNA nucleotidyltransferase [Pedobacter sp. BAL39] gi|149230504|gb|EDM35888.1| tRNA nucleotidyltransferase [Pedobacter sp. BAL39] Length = 468 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 89/457 (19%), Positives = 180/457 (39%), Gaps = 54/457 (11%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K + ++ + + ++ ++GG VRD ++ +DIDI + Sbjct: 2 EKHLQHPVFKVLANIAHTQQTEAYVIGGYVRDIFLSRPSKDIDIVVLGNGIDFAEAAGRQ 61 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + ++GT + + + R + +V + D LRRDFTINA Sbjct: 62 LRTKVAVFKNFGTAMLKTQDLEIEFVGARKESYRADSRKPIVENGTIQDDQLRRDFTINA 121 Query: 127 LY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 L AD ++D G+ DL+N+ I+ D +D LR++R RF A G +I Sbjct: 122 LAISLNADNYAALVDPFDGITDLKNKLIRTPLDPEITFSDDPLRMMRAIRFAAQLG-FSI 180 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + A K K+ + I+S ERI E+NK++ +K P ++++ G+ IF + + Sbjct: 181 DHQAIEAIKKQKERIGIVSKERITDELNKIILSKLPSVGFKYLFDTGLLHLIFPQMANLY 240 Query: 243 LDQLSQVIEAEQVFEWKI-----------DSLLRFIVLISWQDKKSILSMAK-------- 283 ++ + F + D LR+ ++ K + + Sbjct: 241 GVEIINGKGHKDNFYHTLQVLDNICEATDDIWLRWAAILHDIAKPATKRFEEGHGWTFHG 300 Query: 284 --------------KFSLP-REIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDK 323 + LP E ++ + Q+ ++ +++L + G+ Sbjct: 301 HEDKGARMVPQIFGQLKLPLNEKMKYVQKLVQLHLRPIVLAQEVVTDSAVRRLLFDAGED 360 Query: 324 V----MIAKLKIFLALHYNNLTHQDTCFI----LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + M+ + Y +++ + L+ + + + P+TG+D+++ +G Sbjct: 361 IESLMMLCNADVTTKNEYKVKKYRNNFELVKQKLKDVEERDKIRNWQPPITGNDIMQIFG 420 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLS-QEDLHHLLRK 410 + GK+VG I ++ + S E L +L K Sbjct: 421 LTAGKEVGLIKNAIREAILEGEITNSYDEALQFMLEK 457 >gi|304414040|ref|ZP_07395408.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1] gi|304283254|gb|EFL91650.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1] Length = 471 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 148/401 (36%), Gaps = 45/401 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LNK ++ +VGG+VRD L+ QD DIAT P++V ++F Sbjct: 46 ISRKDISD-NALKVLYRLNKSGYEAYLVGGSVRDLLLGKKPQDFDIATNATPEQVRKLFR 104 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVF 109 R + I+ + ++ T R + G + Sbjct: 105 NCRL----IGRRFRLAHIMFGRDVIEVATFRGHHEQELSKNSDKNASQQAQSGMLLRDNI 160 Query: 110 TRDWKADSLRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL+DL+ I+ IGD R ED +R+L Sbjct: 161 FGSIEEDAQRRDFTINSLYYGSSDFVLRDYCGGLHDLKQGVIRLIGDPEVRYREDPVRML 220 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L + R++ E KLL+ + + + Sbjct: 221 RAVRFAAKL-DMTISPETAEPIKRMASLLSDIPPARLFEESLKLLQGGYGYKSYLKLCEY 279 Query: 229 GIFKEIFLDVQEI-------------------SLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 +F+ +F + + D+L + F + I Sbjct: 280 QLFQPLFPLISNHFTEHQDSPMERILVQVLKNTDDRLHNDKQVNPAFLFATMLWYPLIEH 339 Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 ++S L+ + FSL L + + T+ EI L + + Sbjct: 340 AQKLKQESGLAYHEAFSLAMNDVLELENRSLAIPKRITIVTREIWSLQLRLPRREGVRAY 399 Query: 330 KIFLA----LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 K+ Y+ L + QVL + W T Sbjct: 400 KLMQHPKFRAAYDLLMLRAEAENNQVLQKLSCWWTQFQVAT 440 >gi|294782920|ref|ZP_06748246.1| poly(A) polymerase [Fusobacterium sp. 1_1_41FAA] gi|294481561|gb|EFG29336.1| poly(A) polymerase [Fusobacterium sp. 1_1_41FAA] Length = 451 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 102/439 (23%), Positives = 179/439 (40%), Gaps = 49/439 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL LNK K IVGGA+RD L+ L +DID T + + + +FS+ K T Sbjct: 14 IEILRKLNKYG-KGYIVGGAIRDILLGLKPKDIDFTTNLPYETLKDLFSEYNPK--ETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 ++G ++I ++I R D + KV F D K D RRDF+INA+ Sbjct: 71 AFGVLRIRVNDTEYEIAKFREDKYEEKDGLKIVPEDNKVDFVDDIKEDLSRRDFSINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G ++ + + Sbjct: 131 YNEVDGIVDLYNGQKDIENKVINFVGNAEERIVEDPLRILRAFRFMSRLG-FSLSENTIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K LK + ERI E +KLL +N N + M + G+ + I + + + Sbjct: 190 AIKKQKDLLKSIPEERITIEFSKLLLGENVKNTLTAMKDTGVLELIIPEFKATYDFEQHN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDK----------------------KSI 278 +F D LR+ L+ K Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELRYTALLHDIAKPLVQTFDEKGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 + + LP ++ + + + ++ + KL G ++ ++ A + Sbjct: 310 RDILTRLKLPVKLIETVEDIIKKHMVLYRDVTDKKFNKLLSEMGYDNLLRLIEHCNADNS 369 Query: 338 N------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + N + + + + + L G D++ G G ++G I + Sbjct: 370 SKNNEVVNPENDLHERLKRAVEKQMQVTVNDLALNGKDLIDMGFK-GTEIGKIKGELLDK 428 Query: 392 WINSSFQLSQEDLHHLLRK 410 +++ +E + +R+ Sbjct: 429 YLSEEIPNEKEVMLAYVRE 447 >gi|253570547|ref|ZP_04847955.1| tRNA nucleotidyltransferase [Bacteroides sp. 1_1_6] gi|251839496|gb|EES67579.1| tRNA nucleotidyltransferase [Bacteroides sp. 1_1_6] Length = 477 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 177/466 (37%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q ++F + +I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQYFSEPIFGHIAETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ + + R + +V + Sbjct: 61 AMAEALGKRLGRGAHVSVFKNFGTAQVKYKGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINA+ G+++D GG+ D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINAMAVCLNKARFGELVDPFGGMADMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF ID D + + K ++I+S ERI E+NK++ + P V + G+ Sbjct: 181 RFATQLNFY-IDDDTFESLCRNKDRIEIISRERIADELNKIILSPIPSKGFVELERSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS 280 IF ++ + D +E K D+L LR+ L+ K + Sbjct: 240 PLIFPELAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKR 299 Query: 281 ----------------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 PVSGEEIMETFGLQPCREVGALKSAIKDAILDGVIPNEYEAAHAFM 464 >gi|326423862|ref|NP_760535.2| Poly(A) polymerase [Vibrio vulnificus CMCP6] gi|319999234|gb|AAO10062.2| Poly(A) polymerase [Vibrio vulnificus CMCP6] Length = 453 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + +L L+ + +VGG VRD L+ S +D DIAT P+++ ++F Sbjct: 29 ISRKQISD-HALKVLYRLHGAGFDAYLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFR 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ ++ ++ T R +G + Sbjct: 88 NCRL----IGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTID 143 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 144 EDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIRF 203 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+ D + L+ + + R++ E KLL++ + L M +F++ Sbjct: 204 AAKL-DFDIEEDTAAPIEEMAYLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F + + S +AEQ+ + +DS Sbjct: 263 MFPAISAYFTEDYSS--KAEQMLDLVLDS 289 >gi|160882737|ref|ZP_02063740.1| hypothetical protein BACOVA_00695 [Bacteroides ovatus ATCC 8483] gi|299148031|ref|ZP_07041094.1| polyA polymerase family protein [Bacteroides sp. 3_1_23] gi|156111907|gb|EDO13652.1| hypothetical protein BACOVA_00695 [Bacteroides ovatus ATCC 8483] gi|298514214|gb|EFI38100.1| polyA polymerase family protein [Bacteroides sp. 3_1_23] Length = 477 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 176/466 (37%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGQIAETADTLGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ R + R + +V + Sbjct: 61 AMAEALGKQLGRGAHVSVFKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL G+++D GGL D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKARFGELVDPFGGLEDMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF G ID D + + K+ ++I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLGFY-IDDDTFESLCRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS 280 IF + + D +E K D+L LR+ L+ K + Sbjct: 240 PLIFPEFAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKR 299 Query: 281 ----------------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMMLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 PVSGEEIMEIFGLEPCREVGVLKSAIKDAILDGVIPNEYEAAHAFM 464 >gi|306834779|ref|ZP_07467843.1| tRNA adenylyltransferase [Corynebacterium accolens ATCC 49726] gi|304569307|gb|EFM44808.1| tRNA adenylyltransferase [Corynebacterium accolens ATCC 49726] Length = 478 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 91/454 (20%), Positives = 176/454 (38%), Gaps = 59/454 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ + +VGG+VRD+L+ D+D T P+ V I + V T I+Y Sbjct: 29 LVDKFSARGHALYLVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIAY 88 Query: 78 GTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQ 132 GT+ + + + +ITT RSD R +V++ + D +RRDF +NA+ AD Sbjct: 89 GTVSAVYKGQQIEITTFRSDSYDGQSRNPEVIYGDSLEGDLVRRDFKVNAMAIELLADAT 148 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D +GGL+D+ N+ + +D LR+LR RF + E ++ + A Sbjct: 149 FEFHDPLGGLHDVANKVLDTPDKPEISFHDDPLRMLRAARFASQL-EFHVADRVVAAMRD 207 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 ++ ++ ER+ E++KL+ K P + I + N GI IF ++ + + Sbjct: 208 MAAEIQRITVERVQVELDKLMCGKAPWDGIDLLVNTGIADYIFPEIPALRMTTDEHAQHK 267 Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------I 278 L + +A E D +LR+ L+ K Sbjct: 268 DVYAHSLKVLRQAMDQEEDGPDLVLRWAALLHDIGKPDTFDNTDGKVSFHHHEVVGAKLT 327 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 +K P+ + + + + +++ GD ++ +L + Sbjct: 328 RKRLRKLKYPKATTEDIGQLVYLHMRFHGFGENQWTDSAVRRYVNDAGD--LLPRLHKLV 385 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVG 382 + + + + + L G+++++ G+ PG +VG Sbjct: 386 RADCTTRNAKKARRLQRTYDQLEERIAEIGRKEDLARVRPDLDGNEIMEILGLSPGPEVG 445 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + K+ + L +E+ LR+ S Q Sbjct: 446 QAWSYLKEMRLEYG-PLEREEAIAKLRQWWESKQ 478 >gi|237723713|ref|ZP_04554194.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437924|gb|EEO48001.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 474 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 175/460 (38%), Gaps = 58/460 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F++ I ++ + +VGG VRD + +DID+ + + F K + Sbjct: 9 FNNKIFKLISETADELGVECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGR 68 Query: 70 VIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++GT ++ + R + + VV + D RRDFTINA+ Sbjct: 69 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 128 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G+++D GL+DL+ RTI+ D +D LR++R RF ID Sbjct: 129 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 187 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241 A + K+ + I+S ERI E+NK+L A P + + G+ IF ++ + Sbjct: 188 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 247 Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS------------ 280 D +E D+L LR+ L+ K Sbjct: 248 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 307 Query: 281 ----------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKV 324 + +K LP E ++ + + ++ +++L + GD + Sbjct: 308 NFIGEKMIPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 367 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + + A + + F+ L+ L + + P+ G+++++ + Sbjct: 368 -DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFD 426 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413 + P +++G++ K ++ + L H+L+K + Sbjct: 427 LQPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 466 >gi|237708182|ref|ZP_04538663.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457735|gb|EEO63456.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 474 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 175/460 (38%), Gaps = 58/460 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F++ I ++ + +VGG VRD + +DID+ + + F K + Sbjct: 9 FNNKIFKLISETADELGLECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQAFGKKLGR 68 Query: 70 VIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++GT ++ + R + + VV + D RRDFTINA+ Sbjct: 69 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 128 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G+++D GL+DL+ RTI+ D +D LR++R RF ID Sbjct: 129 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 187 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241 A + K+ + I+S ERI E+NK+L A P + + G+ IF ++ + Sbjct: 188 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 247 Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS------------ 280 D +E D+L LR+ L+ K Sbjct: 248 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 307 Query: 281 ----------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKV 324 + +K LP E ++ + + ++ +++L + GD + Sbjct: 308 NFIGEKMIPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 367 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + + A + + F+ L+ L + + P+ G+++++ + Sbjct: 368 -DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFD 426 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413 + P +++G++ K ++ + L H+L+K + Sbjct: 427 LQPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 466 >gi|282858987|ref|ZP_06268125.1| HDIG domain protein [Prevotella bivia JCVIHMP010] gi|282588267|gb|EFB93434.1| HDIG domain protein [Prevotella bivia JCVIHMP010] Length = 474 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 88/464 (18%), Positives = 178/464 (38%), Gaps = 56/464 (12%) Query: 2 VSIVQHKWFHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 +S Q D D+ + I +K + +VGG VRD + DID+ +V Sbjct: 4 LSNAQLAQLLDKDIFHHISEAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K ++GT ++ R + R + + +V + D Sbjct: 64 SELKNILGKKAHLSVFKNFGTAQVKYRDTEVEFVGARKESYSHDSRKPIVEDGTLEDDQN 123 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINA+ D+ G+++D GG++DL + I+ D +D LR++R RF Sbjct: 124 RRDFTINAMAVCLNKDRLGELVDPFGGVDDLWDGIIRTPLDPDITFSDDPLRMMRCVRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 ID + A + + +KI+S ERI E+NK++ K P V ++ G+ + I Sbjct: 184 TQLNFF-IDDETFAALERNAERIKIISGERIAEELNKIMMTKTPSKGFVDLHRCGLLQLI 242 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKSILS--- 280 ++ + + + + F ++ L LR+ L+ K Sbjct: 243 MPELTAMDIVDVKNGRAHKNNFYHTLEVLDNSCKTTDKLWLRWSALLHDIGKPKCKRWDN 302 Query: 281 -------------------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPEIKKLFYLY 320 + ++ LP + + ++ + + ++ E+ Sbjct: 303 AIGWTFHNHNIVGAKMVPGLFRRMKLPMDAKMKYVRKLVDMHMRPIVIADEEVTDSAVRR 362 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD------------IIHWKKPLFP-LTG 367 + + L ++T ++ + L++ + +K+ L P + G Sbjct: 363 LMNDAGDDIDDLMTLCEADITSKNELRKQRFLNNFRTVREKIEDLKVRDYKRLLQPCIDG 422 Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +++++ + P +VG + K+ +++ +E L LL K Sbjct: 423 NEIMEMFHLKPSYEVGVLKKALKEAVLDNKVANEREPLLALLNK 466 >gi|167764732|ref|ZP_02436853.1| hypothetical protein BACSTE_03122 [Bacteroides stercoris ATCC 43183] gi|167697401|gb|EDS13980.1| hypothetical protein BACSTE_03122 [Bacteroides stercoris ATCC 43183] Length = 474 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 87/456 (19%), Positives = 174/456 (38%), Gaps = 57/456 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + F DS I ++ + +VGG VRD + +DID+ + ++ Sbjct: 11 QRFSDSIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALARRL 70 Query: 68 YKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT ++ + R + T +V + D RRDFTIN Sbjct: 71 GRGAHLSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPIVEDGSLEDDQNRRDFTIN 130 Query: 126 ALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL + G+++D GG+ D++ +TI+ D +D LR++R RF Sbjct: 131 ALAVCLNSQRYGELVDPFGGMADMKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID D + + K+ + I+S ERI E+NK+L + P + + G+ + IF ++ + Sbjct: 190 IDDDTFESLCRNKERISIISKERIADELNKILLSPVPSKGFIDLDRSGLLQLIFPELVAL 249 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS---------- 280 D +E K D+L LR+ L+ K + Sbjct: 250 QGVETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFH 309 Query: 281 ------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + ++ LP E ++ + ++ +++L + GD Sbjct: 310 NHNFIGEKMIPDIFRRMKLPMNEKMKYVQKLVGLHMRPIVIADDVVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G++++K Sbjct: 370 DI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKT 428 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + +PP ++VG + K ++ E + Sbjct: 429 FNLPPCQQVGALKSAIKDAILDGVIPNEYEAARAFM 464 >gi|256381055|ref|YP_003104715.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Actinosynnema mirum DSM 43827] gi|255925358|gb|ACU40869.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Actinosynnema mirum DSM 43827] Length = 502 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 88/458 (19%), Positives = 168/458 (36%), Gaps = 68/458 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---DIDIATTILPDRVMRIFSKTRYKVI 71 + + + + +VGG+VRD+L+ S D+D T P+++ R+ S + Sbjct: 10 ADELAARFAEAGHRLYLVGGSVRDALLGRSSGGDFDLDFTTDARPEQIQRLLSGWADGLW 69 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD 130 T I++GT+ + +ITT R+D R +V F + D +RRDFT+NA+ D Sbjct: 70 DTGIAFGTVGATKHGRTVEITTFRADSYDGVTRNPEVTFGDTVEGDLVRRDFTVNAMAFD 129 Query: 131 QQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ID GG L + +D LR+LR RF + G D + A Sbjct: 130 VAARELIDPTGGREALAAMVLDTPATPQQSFGDDPLRMLRAARFVSQIGFTPAD-RVVEA 188 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 L+ ++ ER+ E++KLL +P + + G+ + ++ + L ++ + Sbjct: 189 MTAMAGELERITPERVQQELSKLLCGAHPRRGVELFESTGLAAVVLPELPAMRL-EIDEH 247 Query: 250 IEAEQVFEW----------------KIDSLLRFIVLISW--------------------- 272 + + VF+ D +LR L+ Sbjct: 248 HQHKDVFDHSLVVLQQAIDLEDEDNSPDLVLRLAALLHDIGKPGTRRFESGGGVSFHHHE 307 Query: 273 -QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK----------------TLSIPEIKK 315 K + + +E+ + + T + P + + Sbjct: 308 VLGAKMVRKRLRALRYSKEVVEEVAQLVYLHLRFHGYGNGEWTDSAVRRYATDAGPLLSR 367 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YG 374 L L + AL ++ L D+ ++ L G+++++ G Sbjct: 368 LHKLVRADCTTRNKRKANALQRTYDGLEERIDRLAAEEDL---RRVRPDLDGNEIMRLLG 424 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQE---DLHHLLR 409 +PPG +VG K+ ++ E +L R Sbjct: 425 LPPGPQVGRAWKFLKELRLDRGPLDRDEAEVELLAWAR 462 >gi|257462979|ref|ZP_05627383.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Fusobacterium sp. D12] gi|317060596|ref|ZP_07925081.1| poly(a) polymerase [Fusobacterium sp. D12] gi|313686272|gb|EFS23107.1| poly(a) polymerase [Fusobacterium sp. D12] Length = 446 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 96/432 (22%), Positives = 171/432 (39%), Gaps = 44/432 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL L + + +VGG VRD L+ D D T + + + RIF Y T S+ Sbjct: 15 ILEQLERKG-EGYLVGGCVRDILLGKEPHDYDFCTNLSYEELKRIFK--PYPCKETGKSF 71 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKVI 136 G ++ + F+I RSD +DGR K+ F + + D RRDFTINA+ + + Sbjct: 72 GVFRVQIEGEEFEIARFRSDEGSDGRRPQKIKFVKTIEEDLARRDFTINAMAYHRSKGFL 131 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D GG DL+ + I+ +G+ RI ED LRI+R FRF + G +++ + A + K+ Sbjct: 132 DLYGGEEDLKKKRIRLVGNPIERIREDGLRIMRAFRFVSQLG-FHLEENTKRAIAQEKQM 190 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 LK ++ RI E NKL+ + M G + I ++ + ++ Sbjct: 191 LKKIAKSRITEEWNKLVVGDFVAKTLEMMKETGALEIILPSLKLCYNFNQNTPYHCYDLW 250 Query: 257 EWKI--------DSLLRFIVLIS--------------------WQDKKSILSMAKKFSLP 288 E + D +LR + +KK + + Sbjct: 251 EHTLHVVNLVPNDLVLRLAAIFHDIGKPFTKTVDEKTGYYHFYGHEKKGAEIIGRILQGE 310 Query: 289 REIRYFLIS-----FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-NLTH 342 E + N + I+K+ +G++ L++ +A + +L Sbjct: 311 LEEANTIRKEVEFLIANHMLLHQNTDEKSIRKMISRFGEERSRKLLQLSVADNLAKDLKK 370 Query: 343 QDTCFILQVLSDIIHWKK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 + ++ II +K + G D+++ G GK + I + ++ + + Sbjct: 371 ISEKNLEELFYKIIEEEKIPGLSDLAINGFDLMELGYV-GKNIQEIKEYLLEQVVEGKIE 429 Query: 399 LSQEDLHHLLRK 410 L +K Sbjct: 430 NEHTVLWEAAKK 441 >gi|256846258|ref|ZP_05551715.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_36A2] gi|256718027|gb|EEU31583.1| tRNA adenylyltransferase [Fusobacterium sp. 3_1_36A2] Length = 451 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 107/442 (24%), Positives = 183/442 (41%), Gaps = 55/442 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ Y T Sbjct: 14 IKILNKLNKYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYRTLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D + KV F D + D RRDFTINA+ Sbjct: 71 SFGVLRIRIDNTDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 +Q+ +ID G D+ NR I F+G A RI+ED LR+LR FRF + + ++ + + Sbjct: 131 YNQKEGIIDLYNGQKDIENRIINFVGKAEERIIEDPLRVLRAFRFMSRL-KFSLSENTVE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K+ LK +S ERI E +KLL +N N + M + G+ + I +++ Sbjct: 190 AIKKQKELLKNISEERITMEFSKLLLGENIKNTLTLMKDMGVLELIIPELKATYDFNQYN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSI---------------------- 278 +F D LR+ L+ K + Sbjct: 250 PHHNLDLFNHIINVVSKVPADLELRYSALLHDIAKPIVQTFDEEGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFN----------QKTLSIPEIKKLFYLYGDKVMIAK 328 + + LP ++ ++ + K LS L+ L Sbjct: 310 RDILTRMKLPVKLIDTVVEIIKKHMILYRDVTDKKFNKLLSEMGYDNLWRLIEHCNADNS 369 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 K + N H+ + + + + + G D+++ G GK++G I Sbjct: 370 SKNNEVVSTENDLHE---RLKRAVEKQMQVTVNDLAVNGKDLIELGFT-GKEIGEIKKEL 425 Query: 389 KQEWINSSFQLSQEDLHHLLRK 410 ++++ Q +E++ + +++ Sbjct: 426 LDKYLSEEIQNEKEEMLNYVKE 447 >gi|322378795|ref|ZP_08053224.1| poly(A) polymerase [Helicobacter suis HS1] gi|322380644|ref|ZP_08054796.1| poly(A) polymerase [Helicobacter suis HS5] gi|321146966|gb|EFX41714.1| poly(A) polymerase [Helicobacter suis HS5] gi|321148825|gb|EFX43296.1| poly(A) polymerase [Helicobacter suis HS1] Length = 407 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 178/401 (44%), Gaps = 16/401 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L+ ++ L+ +G ++ +VGG+VRD L+N +D D+AT P++++ + +++ + Sbjct: 15 LLELIDLIEQGGFEAVVVGGSVRDLLLNKKPKDYDLATNATPEQLLALL-QSKMQTSLVG 73 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 + +GT+ ++ + ++F+ITT R + T+ R+ KV F ++D RRD TINAL + Sbjct: 74 LKFGTLGVLYKGQFFEITTYRLEFDYTNHRHPKVSFVNSLESDLSRRDLTINALAFHPKK 133 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D GGL DL++R + F+G R+ ED LRILR RF + G K +D A Sbjct: 134 GLLDLHGGLQDLKDRKLAFVGVPSVRLEEDALRILRAMRFASTLGFK-LDVKSENALFDQ 192 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L +S ERIW E ++LL N + V M + + IF + L +LS Sbjct: 193 ANLLDKISKERIWHECSRLLVGFNASD--VCMRYCTLLERIFGSLDSKLLAKLSCT---- 246 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 + + R +++ D+ S+ + K P++ L S + Sbjct: 247 -----PPNLVARLLLIYQNCDQLSMQTCLKNLKAPKQFILTLNKLHPYTKINPQDSKIWV 301 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 K+ + A L A L+ + + L GD V Sbjct: 302 KQQLQVLSLSQFRAWLGWLQASDV-PLSRALRVHFKVIGIQKEVYSLHFLALKGDHVKNL 360 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 G+ G ++G L C +E + + L +K I Sbjct: 361 GLR-GAEIGACLQACLKEVVQERVKNELGALLEWAQKWIKD 400 >gi|254884767|ref|ZP_05257477.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319644170|ref|ZP_07998695.1| polyA polymerase [Bacteroides sp. 3_1_40A] gi|254837560|gb|EET17869.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317384292|gb|EFV65263.1| polyA polymerase [Bacteroides sp. 3_1_40A] Length = 474 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 175/460 (38%), Gaps = 58/460 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F++ I ++ + +VGG VRD + +DID+ + + F K + Sbjct: 9 FNNKIFKLISETADELGLECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQTFGKKLGR 68 Query: 70 VIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++GT ++ + R + + VV + D RRDFTINA+ Sbjct: 69 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 128 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G+++D GL+DL+ RTI+ D +D LR++R RF ID Sbjct: 129 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 187 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241 A + K+ + I+S ERI E+NK+L A P + + G+ IF ++ + Sbjct: 188 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 247 Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS------------ 280 D +E D+L LR+ L+ K Sbjct: 248 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 307 Query: 281 ----------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKV 324 + +K LP E ++ + + ++ +++L + GD + Sbjct: 308 NFIGEKMVPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 367 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + + A + + F+ L+ L + + P+ G+++++ + Sbjct: 368 -DDLMLLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGEEIMRIFD 426 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413 + P +++G++ K ++ + L H+L+K + Sbjct: 427 LQPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 466 >gi|152998010|ref|YP_001342845.1| poly(A) polymerase [Marinomonas sp. MWYL1] gi|150838934|gb|ABR72910.1| poly(A) polymerase [Marinomonas sp. MWYL1] Length = 484 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 28/253 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK + +VGG VRD L+ + +D D+ T P+ V IFS +R Sbjct: 41 SPNAVKVLYRLNKAGFDAFLVGGCVRDHLIGIKPKDFDVVTNATPEEVHTIFSNSRL--- 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------------------ITDGRYAKVVF 109 + + + ++ +++T R++ G + Sbjct: 98 -IGRRFKLVHVTFGREIIEVSTFRANSAQDDSDDDDTQNSSLKGKDSARSAHGIVLRDNV 156 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + + D+ RRDFT NALY + + + DY GGL D+ N+ I+ IGDA R ED +R+L Sbjct: 157 YGNIEEDAERRDFTFNALYYNVKDFSIHDYCGGLKDIENKQIRIIGDARQRYQEDPVRML 216 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF G ++++ + L + R++ E+ KLL + N + + Sbjct: 217 RAIRFAGKLG-FELEAETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGIETFHLLRQY 275 Query: 229 GIFKEIFLDVQEI 241 G+F+ +F D + Sbjct: 276 GLFRYLFPDTDAL 288 >gi|237720154|ref|ZP_04550635.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_2_4] gi|260173994|ref|ZP_05760406.1| tRNA nucleotidyltransferase [Bacteroides sp. D2] gi|315922263|ref|ZP_07918503.1| tRNA nucleotidyltransferase [Bacteroides sp. D2] gi|229450706|gb|EEO56497.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_2_4] gi|313696138|gb|EFS32973.1| tRNA nucleotidyltransferase [Bacteroides sp. D2] Length = 477 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 176/466 (37%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGQIAETADTLGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ R + R + +V + Sbjct: 61 AMAEALGKQLGRGAHVSVFKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL G+++D GGL D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKARFGELVDPFGGLEDMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF G ID D + + K+ ++I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLGFY-IDDDTFESLCRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS 280 IF + + D +E K D+L LR+ L+ K + Sbjct: 240 SLIFPEFAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKR 299 Query: 281 ----------------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMMLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 PVSGEEIMEIFGLEPCREVGVLKSAIKDAILDGVIPNEYEAAHAFM 464 >gi|255691214|ref|ZP_05414889.1| polyA polymerase family protein [Bacteroides finegoldii DSM 17565] gi|260623126|gb|EEX45997.1| polyA polymerase family protein [Bacteroides finegoldii DSM 17565] Length = 478 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 90/473 (19%), Positives = 182/473 (38%), Gaps = 64/473 (13%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGKIAETADTLGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ + + R + +V + Sbjct: 61 AMAEALGKHLGRGAHVSVFKNFGTAQVKYKGTEVEFVGARRESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL + G+++D GGL D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKGRFGELVDPFGGLEDMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF G ID D + + K ++I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLGFY-IDDDTFDSLCRNKDRIEIISRERIADELNKIILSPIPSKGFIDLDRSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS--------- 271 IF ++ + D +E K D+L LR+ L+ Sbjct: 240 PLIFPELAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKR 299 Query: 272 -------------WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K I ++ +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRIRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED----LHHLLRKL 411 P++G+++++ +G+ P ++VG + K ++ E + +K+ Sbjct: 419 PVSGEEIMETFGLQPCREVGTLKSAIKDAILDGVIPNEYEAARTFMLARAKKM 471 >gi|237714012|ref|ZP_04544493.1| tRNA nucleotidyltransferase [Bacteroides sp. D1] gi|262407064|ref|ZP_06083613.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_22] gi|229445836|gb|EEO51627.1| tRNA nucleotidyltransferase [Bacteroides sp. D1] gi|262355767|gb|EEZ04858.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_22] Length = 477 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 178/466 (38%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGQIAETADALGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ R + R + +V + Sbjct: 61 AMAEALGKRLGRGAHVSVFKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL G+++D GG+ D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKARFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF G ID D + + K+ ++I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLGFY-IDDDTFESLCRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS--------- 271 IF + + D +E K D+L LR+ L+ Sbjct: 240 PLIFPEFAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKR 299 Query: 272 -------------WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K I + +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMMLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 PVSGEEIMEIFGLEPCREVGVLKSAIKDAILDGVIPNEYEAAHAFM 464 >gi|300934368|ref|ZP_07149624.1| tRNA nucleotidyltransferase [Corynebacterium resistens DSM 45100] Length = 504 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 93/469 (19%), Positives = 170/469 (36%), Gaps = 65/469 (13%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 ++ L + + +VGG+VRD+L+ D+D T P +++ + K+ Sbjct: 35 QNATLQPLARAFHGAGFSLYLVGGSVRDALLGRLSHDLDFTTDARPAQIIEVLEPLAEKI 94 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I YGT+ + R +ITT R+D D R V F + D +RRDF +NA+ Sbjct: 95 WDTGIEYGTVSALVRGAMLEITTFRADQYDGDSRNPDVTFGDSLEGDLIRRDFRVNAMAL 154 Query: 130 ----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 D + D +GGL+D + +D LR+LR RF + E + Sbjct: 155 ELRPDGDHQFQDPLGGLDDAAAGLLDTPDSPEISFNDDPLRMLRACRFVSQL-EFAVAPR 213 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241 A + +K ++ ER+ E+NKL+ P + + M + G+ + + ++ + Sbjct: 214 VGAAMKEMAPQIKRITVERVAVELNKLMLGAAPWDGLDLMVDSGLAEFVLPELPALKMTQ 273 Query: 242 ------------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-------- 281 SL L +E E W+ D LR L+ K + + Sbjct: 274 DEHKQHKDVYRHSLRVLRNAVELEAKNNWEPDLELRMASLLHDVGKPATRAFTESGAVTF 333 Query: 282 --------------AKKFSLPREIRYFLISFFNCNFN-----------QKTLSIPEIKKL 316 +K R+ + + + + + +++ Sbjct: 334 HQHEVVGAKMTRKRLQKLKYSRQHVKDISQLVFLHMRFHGYSDGGAQGEPSWTDSAVRRY 393 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDT--------CFILQVLSDIIHWKKPLFPLTGD 368 GD + L + N D + L + L G+ Sbjct: 394 VNDAGDLLPRLHLLVRADCTTRNKRKADRLQRTYDGLEQRIAELQEQEDLAAVRPDLDGN 453 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++ +PPG +VG + K+ ++ L +E+ LR A Q Sbjct: 454 AIMEILDLPPGPQVGKAWAYLKELRLDRG-PLPREEAIAELRAWWAEQQ 501 >gi|239930192|ref|ZP_04687145.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291438534|ref|ZP_06577924.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341429|gb|EFE68385.1| RNA nucleotidyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 475 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 89/464 (19%), Positives = 168/464 (36%), Gaps = 67/464 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + +VGG+VRD+L+ D+D T P V++I V Sbjct: 16 ADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPQDVLKIVRPWADAVWEVG 75 Query: 75 ISYGTIKI--------ICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 I++GT+ R ++TT RS+ R +V + + D RRDFT+N Sbjct: 76 IAFGTVGAQKEARVGDADRSFQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLARRDFTVN 135 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + +D GGL+DL R ++ G +D LR+LR RF A + + Sbjct: 136 AMAVALPEKRFVDPYGGLDDLATRVLRTPGTPEESFSDDPLRMLRAARFAAQL-DFEVAP 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + + A + L+I+S+ER+ E+NKL+ + +P + + G+ + + ++ + L+ Sbjct: 195 EVVAAMKEMAGRLEIVSAERVRDELNKLILSSHPRKGLTLLTETGLAEYVLPELPALRLE 254 Query: 245 Q-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK-------- 283 + L + +A + + D LR L+ K K Sbjct: 255 RDEHHRHKDVYDHTLIVLEQAMALEDEGPDLTLRLAALLHDIGKPRTRRFEKDGRVSFHH 314 Query: 284 --------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------PEI 313 E+ + + P + Sbjct: 315 HEVVGAKMTKKRMTALKYSNELVKDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLL 374 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK- 372 +L L + AL ++ LQ ++ + L G+ +++ Sbjct: 375 DRLHKLTRSDCTTRNRRKAAALSRAYDGLEERIAQLQEQEELDAIRPD---LDGNQIMEI 431 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 GI PG VG H + + + + + L++ A Q Sbjct: 432 LGIKPGPVVGQAYQHMLELRLENG-PMEHDAAVKALKEWWAERQ 474 >gi|220917575|ref|YP_002492879.1| tRNA cytidylyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955429|gb|ACL65813.1| tRNA cytidylyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 436 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 101/424 (23%), Positives = 175/424 (41%), Gaps = 30/424 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70 ++++L L+ +S +VGGAVRD L++ D D+AT P +VM +F +V Sbjct: 14 EAILDVLRRLSAAGHRSWLVGGAVRDLLLHRPRAATDFDVATPATPRQVMALFR----RV 69 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALY 128 IPT I +GT+ ++ + ++TT R + DGR V F + +AD RRDFT+NA+ Sbjct: 70 IPTGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPASVTFLAELEADLARRDFTMNAMA 129 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D Q D G D+ R I+ +G+ R ED LR +R RF A G + +D Sbjct: 130 YDPLQADFRDPFDGRVDMSRRRIRAVGEPAARFGEDGLRAMRAVRFAAQLGYR-LDPATR 188 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A A + ++ +S ER+ E+++L+ A + A++ + G+ + + + L Sbjct: 189 AAIPGALEVVRKVSVERVAEELSRLVLAAHAGPALLLLRRTGLLGVVLPAIAALPLSAYR 248 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY---FLISFFNCNFN 304 + + LR L+ + + LPR + L+ + C Sbjct: 249 HAASVVR--HAPAEPALRLAALLHGVGPEEASKIVFGLRLPRRLSDEVGTLLRAYACPAA 306 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL-- 362 + ++P+ + + ++ L L V ++ + + Sbjct: 307 RHPAALPDAPADIRRWLARTGPQRVPAVFELVSAELRTLSPAHRAAVAPEVSRARAAIDA 366 Query: 363 ------------FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L G V+ G PG VG L H + Q ++E L LR Sbjct: 367 ELAAAPPLATGDLALDGRAVMSLLGEGPGPHVGEALHHLLDRVLEDPAQNTREALAAELR 426 Query: 410 KLIA 413 + A Sbjct: 427 RWWA 430 >gi|253689485|ref|YP_003018675.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756063|gb|ACT14139.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 482 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 82/408 (20%), Positives = 141/408 (34%), Gaps = 52/408 (12%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + D + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F Sbjct: 50 TISRSDISD-NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLF 108 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVV 108 R + I+ + ++ T R G + Sbjct: 109 RNCRL----VGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQETKNSSQQAQSGMLLRDN 164 Query: 109 FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 + D+ RRDF+IN+LY V DY GGLNDLR I+ IGD R ED +R+ Sbjct: 165 IFGSVEEDAQRRDFSINSLYYSIADFSVRDYTGGLNDLRQGVIRMIGDPETRYREDPVRM 224 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 LR RF A + + + L + + R++ E KLL++ + + Sbjct: 225 LRAVRFAAKLN-MTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGHGYPTYKMLCE 283 Query: 228 GGIFKEIFLDVQEISLDQLSQVIEA--EQVFE---------WKIDSLLRFIVLISWQDKK 276 +F+ +F + +E QV + +++ F ++ + + Sbjct: 284 YQLFQPLFPLLSRYFTPNGDSTLERMVAQVLKNTDQRLQNNMRVNPAFLFSAMLWYPLIE 343 Query: 277 SILSMAKKFSL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 +A++ L I + S + +T K Sbjct: 344 HAQKLAQESGLAYFDAFSLATNDVLDEQCRSLAIPKRITSLVRDIWQLQTRLSRRQGKRA 403 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 Y + L L HQ+ + Q + P Sbjct: 404 YKLMEHPKFRAAYDLLCLRAEIENHQELLRLAQWWGEFQVAAPPRQQN 451 >gi|295084899|emb|CBK66422.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bacteroides xylanisolvens XB1A] Length = 477 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 178/466 (38%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGQIAETADAFGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ R + R + +V + Sbjct: 61 AMAEALGKRLGRGAHVSVFKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL G+++D GG+ D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKARFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF G ID D + + K+ ++I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLGFY-IDDDTFESLCRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS--------- 271 IF + + D +E K D+L LR+ L+ Sbjct: 240 PLIFPEFAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKR 299 Query: 272 -------------WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K I + +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMMLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 PVSGEEIMEIFGLEPCREVGVLKSAIKDAILDGVIPNEYEAAHAFM 464 >gi|154494462|ref|ZP_02033782.1| hypothetical protein PARMER_03817 [Parabacteroides merdae ATCC 43184] gi|154085906|gb|EDN84951.1| hypothetical protein PARMER_03817 [Parabacteroides merdae ATCC 43184] Length = 477 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 89/446 (19%), Positives = 171/446 (38%), Gaps = 57/446 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIPTSI 75 I ++ ++ ++GG VRD ++ +DID+ + + ++ R + Sbjct: 20 ISEAADELGVEAYVIGGYVRDIFLHRPSKDIDVVAIGSGIELAKAVARKLGRGAYLSVFK 79 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131 ++GT ++ + R + T +V + D RRDFTINAL D+ Sbjct: 80 NFGTAQVKAGDLELEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTINALALCLNKDR 139 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GL D+ N I+ D +D LR++R RF + G ID D A Sbjct: 140 YGELVDPFDGLTDMDNLLIRTPLDPDITFSDDPLRMMRAVRFASQLGFF-IDPDTFDAIE 198 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + K+ + I+S ERI E+NK++ + P + G+ IF ++ + + + I Sbjct: 199 RNKERISIISKERIVDELNKIVLSPKPSVGFDLLERCGLLPLIFPELCALKGVETKEGIG 258 Query: 252 AEQVFEWKIDSL-----------LRFIVLISWQDKKSILSMAKKF--------------- 285 + F + L LR+ L K + + Sbjct: 259 HKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNHNFIGEKMI 318 Query: 286 -------SLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIF 332 LP E ++ + + LS E I++L + GD + +K+ Sbjct: 319 PGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDI-DDLMKLC 377 Query: 333 LALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + F+ + + + P+TG+++++ +G+PP + VG Sbjct: 378 EADITSKNPEKVRRFLANFQKVRSKLADIEEKDRVRNFQPPVTGEEIMETFGLPPSQPVG 437 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408 + K ++ E H + Sbjct: 438 VLKEAIKNAILDGVIPNEYEAAHTFM 463 >gi|329961598|ref|ZP_08299657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacteroides fluxus YIT 12057] gi|328531590|gb|EGF58424.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacteroides fluxus YIT 12057] Length = 476 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 86/451 (19%), Positives = 173/451 (38%), Gaps = 57/451 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++F D I +K + +VGG VRD + +DID+ + ++ Sbjct: 11 QYFSDDIFKRISGTADKLGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGRSL 70 Query: 68 YKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT ++ + R + T +V + D RRDFTIN Sbjct: 71 GRGAHVSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTIN 130 Query: 126 ALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 A+ G+++D GG+ DL+ +TI+ D +D LR++R RF Sbjct: 131 AMAVCLNSARYGELVDPFGGMEDLKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID + + + + I+S ERI E+NK+L + P + + G+ + IF ++ + Sbjct: 190 IDDVTFESLQRNRDRISIISKERIADELNKILLSPVPSKGFIDLDRSGLLELIFPELVAL 249 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS------------------- 271 D +E K D+L LR+ L+ Sbjct: 250 QGVETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKRWEPRAGWTFH 309 Query: 272 ---WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + +K I + +K LP E ++ + + ++ +++L + GD Sbjct: 310 NHNFIGEKMIPEIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G+++++ Sbjct: 370 DI-DDLMTLCEADITSKNMERKKRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMET 428 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 +G+ P ++VG + K ++ E Sbjct: 429 FGLTPCREVGALKSAIKDAILDGVIPNEYEA 459 >gi|255014465|ref|ZP_05286591.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_7] Length = 476 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 91/446 (20%), Positives = 169/446 (37%), Gaps = 57/446 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIPTSI 75 I + + ++GG VRD +N +DID+ + + +K R + Sbjct: 20 ISEAAEELGVEVYVIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGRGAYLSVFK 79 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131 ++GT ++ + R + + VV + D RRDFTINAL ++ Sbjct: 80 NFGTAQVKAGDLELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALALCLNKER 139 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GGL D+ TI+ D +D LR++R RF G ID D A I Sbjct: 140 YGELVDPFGGLEDMDELTIRTPLDPDVTFSDDPLRMMRAIRFATQLGFF-IDPDTFDAII 198 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + ++ + I+S ERI E+NK++ + P + G+ IF ++ + + + I Sbjct: 199 RNRERISIISKERIVDELNKIVLSPKPSIGFDLLDKCGLLPLIFPELCALKGVETKEGIG 258 Query: 252 AEQVFEWKIDSL-----------LRFIVLISWQDKKSILSMAKKF--------------- 285 + F + L LR+ L K + + Sbjct: 259 HKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNHNFIGERMI 318 Query: 286 -------SLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIF 332 LP E ++ + + LS E I++L + GD + +K+ Sbjct: 319 PGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDI-DDLMKLC 377 Query: 333 LALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + F+ L + + + P++G+++++ +G+ P K VG Sbjct: 378 EADITSKNPEKVRRFLNNFRKVREKLADIEEKDRVRNFQPPVSGEEIMETFGLAPSKPVG 437 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408 + K ++ E L Sbjct: 438 VLKEAIKNAILDGVIPNEYEAARQFL 463 >gi|218128766|ref|ZP_03457570.1| hypothetical protein BACEGG_00338 [Bacteroides eggerthii DSM 20697] gi|217988994|gb|EEC55310.1| hypothetical protein BACEGG_00338 [Bacteroides eggerthii DSM 20697] Length = 474 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 176/456 (38%), Gaps = 57/456 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + F D+ I ++ + +VGG VRD + +DID+ + +K Sbjct: 11 QRFSDNIFGRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRL 70 Query: 68 YKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT ++ + R + T VV + D RRDFTIN Sbjct: 71 GRGAHLSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPVVEDGSLEDDQNRRDFTIN 130 Query: 126 ALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL + G+++D GG+ D+R +TI+ D +D LR++R RF Sbjct: 131 ALAVCLNRQRYGELVDPFGGMEDMREKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID D + + K+ + I+S ERI E+NK+L + P ++ + G+ + IF ++ + Sbjct: 190 IDDDTFESLCRNKERISIISRERIADELNKILLSPVPSKGLIDLDRSGLLQLIFPELVAL 249 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS---------- 280 D +E K D+L LR+ L+ K + Sbjct: 250 QGVETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFH 309 Query: 281 ------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + ++ LP E ++ + + ++ +++L + GD Sbjct: 310 NHNFIGEKMIPEIFRRMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G++++K Sbjct: 370 DI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKT 428 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + +PP ++VG + K ++ E + Sbjct: 429 FNLPPCRQVGALKSAIKDAILDGVIPNDYEAARAFM 464 >gi|326329108|ref|ZP_08195437.1| tRNA adenylyltransferase [Nocardioidaceae bacterium Broad-1] gi|325953190|gb|EGD45201.1| tRNA adenylyltransferase [Nocardioidaceae bacterium Broad-1] Length = 483 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 82/446 (18%), Positives = 155/446 (34%), Gaps = 59/446 (13%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 G + +VGG VRD+++ D+D T+ P+ +I + +GT Sbjct: 34 EAFAAGGHELALVGGPVRDAMLGRPHNDLDFTTSARPEETEKILRTWGEALWDMGRDFGT 93 Query: 80 IKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVID 137 I ++TT RS+ + D R V + D +RRDFT+NA+ G +V+D Sbjct: 94 IGTRKGPWQVEVTTYRSEAYSADSRKPAVAYGTSLADDLVRRDFTVNAMAVRLPGREVVD 153 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GG+ DL R ++ G +D LR++R RF A G + + + A + Sbjct: 154 LYGGVVDLATRMLRTPGTPEDSFSDDPLRMMRAARFAAQLG-FTVAPEVVAAMTDMASRI 212 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------------ 245 I+S+ER+ E+ KL+ A P + + G+ + + ++ + +++ Sbjct: 213 SIISAERVRDELVKLICAPFPRLGLTLLVETGLAELVLPELTALRMERDEHNRHKDVYEH 272 Query: 246 ----LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA------------------- 282 L Q I+ E D + RF L+ K Sbjct: 273 TLTVLEQSIDQEARLGGGPDFVSRFAALMHDVGKPRTRKFHDDGTVSFHHHDVVGAKMTR 332 Query: 283 ---KKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 K + + + + +++ GD+ + +L + Sbjct: 333 KRMKALRFSNDEIEAVSKLVELHLRFHGYGDGDWTDSAVRRYVRDAGDQ--LDRLHVLTR 390 Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKP----------LFPLTGDDVVK-YGIPPGKKVGN 383 + + + + + L G+ ++ GI PG++VG Sbjct: 391 ADCTTRNRRKADRLARTYDALEARIERISEEEELAALRPALDGNQIMSLLGISPGREVGA 450 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ E LL Sbjct: 451 AYKFLMDLRLDEGILSEDEAAKRLLD 476 >gi|311897290|dbj|BAJ29698.1| putative tRNA nucleotidyltransferase [Kitasatospora setae KM-6054] Length = 481 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 86/458 (18%), Positives = 170/458 (37%), Gaps = 63/458 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I + + +VGG+VRD+L+ D+D T P +++++ V Sbjct: 24 ADEIARRFQEAGHRLSLVGGSVRDALLGRLGNDLDFTTDARPQQILKLVKGWADAVWDVG 83 Query: 75 ISYGTIKIICR----KKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA 129 I++GT+ +ITT RS+ R +V + + D +RRDFT+NA+ Sbjct: 84 IAFGTVGARKDTPEGSFLIEITTYRSEAYDRSSRKPEVSYGDSIEQDLVRRDFTVNAMAV 143 Query: 130 DQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D G+ +D GL+DL R ++ +D LR++R RF A + + + + Sbjct: 144 DLPGRGFVDPHRGLDDLEARVLRTPATPEESFSDDPLRMMRAARFAAQL-DFDPAPEVVA 202 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD---- 244 A + I+S+ER+ +E+NKLL A++P+ + + + G+ + ++ + L+ Sbjct: 203 AMTAMADRIGIVSAERVQAELNKLLLAEHPVKGLRLLVDTGLADHVLPELPALRLESDEH 262 Query: 245 ---------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA------------- 282 L+ + +A + D +LR L+ K Sbjct: 263 HRHKDVYEHSLTVLEQAIALETDGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHHHEVV 322 Query: 283 ---------KKFSLPREIRYFLISFFNCNFNQKTL----------------SIPEIKKLF 317 ++ E+ + + + P + +L Sbjct: 323 GAKMTRKRMRELKYSNELVNEVSRLVELHLRFHGYGGGEWTDSAVRRYVADAGPLLSRLH 382 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIP 376 L + AL + ++ LQ ++ + L G+ +++ G+ Sbjct: 383 KLTRSDCTTRNKRKAAALARTYDSLEERITALQAQEELDAIRP---ALDGNRIMELLGLR 439 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 PG +VG H + + + + LR A Sbjct: 440 PGPEVGRAYKHLLELRLEHG-PMEPAEAEAALRAWWAE 476 >gi|212690796|ref|ZP_03298924.1| hypothetical protein BACDOR_00283 [Bacteroides dorei DSM 17855] gi|212666673|gb|EEB27245.1| hypothetical protein BACDOR_00283 [Bacteroides dorei DSM 17855] Length = 500 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 174/460 (37%), Gaps = 58/460 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F++ I ++ + +VGG VRD + +DID+ + + K + Sbjct: 35 FNNKIFKLISETADELGLECYVVGGYVRDIFLARPSKDIDVVVVGSGIEMAQALGKKLGR 94 Query: 70 VIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++GT ++ + R + + VV + D RRDFTINA+ Sbjct: 95 GAHVSVFKNFGTAQVKYHDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINAM 154 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G+++D GL+DL+ RTI+ D +D LR++R RF ID Sbjct: 155 AVCLNKARFGELVDPFNGLDDLKERTIRTPLDPDITFSDDPLRMMRCVRFATQLNFY-ID 213 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241 A + K+ + I+S ERI E+NK+L A P + + G+ IF ++ + Sbjct: 214 DTTFEALSRNKERIHIISKERIADELNKILLAPIPSKGFIELDRCGLLPLIFPELVALQG 273 Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS------------ 280 D +E D+L LR+ L+ K Sbjct: 274 VETRNGRAHKDNFYHTLEVVDNISKHTDNLWLRWATLLHDIGKPRTKRWEPRIGWTFHNH 333 Query: 281 ----------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKV 324 + +K LP E ++ + + ++ +++L + GD + Sbjct: 334 NFIGEKMIPDLFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI 393 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + + A + + F+ L+ L + + P+ G+++++ + Sbjct: 394 -DDLMMLCEADITSKNEARKQKFLDNFKLVRQKLKDLEEKDWIRNFQPPVDGEEIMRIFD 452 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRKLIA 413 + P +++G++ K ++ + L H+L+K + Sbjct: 453 LQPCREIGSLKSSIKDAILDGIIPNEHDAALEHMLKKAKS 492 >gi|150008663|ref|YP_001303406.1| tRNA nucleotidyltransferase [Parabacteroides distasonis ATCC 8503] gi|256841303|ref|ZP_05546810.1| tRNA adenylyltransferase [Parabacteroides sp. D13] gi|262383540|ref|ZP_06076676.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_33B] gi|301311477|ref|ZP_07217404.1| polyA polymerase family protein [Bacteroides sp. 20_3] gi|149937087|gb|ABR43784.1| tRNA nucleotidyltransferase [Parabacteroides distasonis ATCC 8503] gi|256737146|gb|EEU50473.1| tRNA adenylyltransferase [Parabacteroides sp. D13] gi|262294438|gb|EEY82370.1| tRNA nucleotidyltransferase [Bacteroides sp. 2_1_33B] gi|300830563|gb|EFK61206.1| polyA polymerase family protein [Bacteroides sp. 20_3] Length = 476 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 91/446 (20%), Positives = 169/446 (37%), Gaps = 57/446 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIPTSI 75 I + + ++GG VRD +N +DID+ + + +K R + Sbjct: 20 ISEAAEELGVEVYVIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGRGAYLSVFK 79 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131 ++GT ++ + R + + VV + D RRDFTINAL ++ Sbjct: 80 NFGTAQVKAGDLELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALALCLNKER 139 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GGL D+ TI+ D +D LR++R RF G ID D A I Sbjct: 140 YGELVDPFGGLEDMDELTIRTPLDPDVTFSDDPLRMMRAVRFATQLGFF-IDPDTFDAII 198 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + ++ + I+S ERI E+NK++ + P + G+ IF ++ + + + I Sbjct: 199 RNRERISIISKERIVDELNKIVLSPKPSIGFDLLDKCGLLPLIFPELCALKGVETKEGIG 258 Query: 252 AEQVFEWKIDSL-----------LRFIVLISWQDKKSILSMAKKF--------------- 285 + F + L LR+ L K + + Sbjct: 259 HKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNHNFIGERMI 318 Query: 286 -------SLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIF 332 LP E ++ + + LS E I++L + GD + +K+ Sbjct: 319 PGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDI-DDLMKLC 377 Query: 333 LALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + F+ L + + + P++G+++++ +G+ P K VG Sbjct: 378 EADITSKNPEKVRRFLNNFRKVREKLADIEEKDRVRNFQPPVSGEEIMETFGLAPSKPVG 437 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408 + K ++ E L Sbjct: 438 VLKEAIKNAILDGVIPNEYEAARQFL 463 >gi|298376033|ref|ZP_06985989.1| polyA polymerase family protein [Bacteroides sp. 3_1_19] gi|298267070|gb|EFI08727.1| polyA polymerase family protein [Bacteroides sp. 3_1_19] Length = 476 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 91/446 (20%), Positives = 169/446 (37%), Gaps = 57/446 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIPTSI 75 I + + ++GG VRD +N +DID+ + + +K R + Sbjct: 20 ISEAAEELGVEVYVIGGYVRDIFLNRPSKDIDVVAVGSGIELAKRVAKKIGRGAYLSVFK 79 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131 ++GT ++ + R + + VV + D RRDFTINAL ++ Sbjct: 80 NFGTAQVKAGDLELEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALALCLNKER 139 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GGL D+ TI+ D +D LR++R RF G ID D A I Sbjct: 140 YGELVDPFGGLEDMDELTIRTPLDPDITFSDDPLRMMRAVRFATQLGFF-IDPDTFDAII 198 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + ++ + I+S ERI E+NK++ + P + G+ IF ++ + + + I Sbjct: 199 RNRERISIISKERIVDELNKIVLSPKPSIGFDLLDKCGLLPLIFPELCALKGVETKEGIG 258 Query: 252 AEQVFEWKIDSL-----------LRFIVLISWQDKKSILSMAKKF--------------- 285 + F + L LR+ L K + + Sbjct: 259 HKDNFAHTLMVLDRLSKTSDNLWLRWSALFHDIAKPATKRFDPRLGWTFHNHNFIGERMI 318 Query: 286 -------SLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIF 332 LP E ++ + + LS E I++L + GD + +K+ Sbjct: 319 PGIFRKMKLPMNEKMKYVQKMVSLHMRPIALSDDEVTDSAIRRLLFDAGDDI-DDLMKLC 377 Query: 333 LALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + F+ L + + + P++G+++++ +G+ P K VG Sbjct: 378 EADITSKNPEKVRRFLNNFRKVREKLADIEEKDRVRNFQPPVSGEEIMETFGLAPSKPVG 437 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLL 408 + K ++ E L Sbjct: 438 VLKEAIKNAILDGVIPNEYEAARQFL 463 >gi|184201989|ref|YP_001856196.1| tRNA nucleotidyltransferase [Kocuria rhizophila DC2201] gi|183582219|dbj|BAG30690.1| tRNA nucleotidyltransferase [Kocuria rhizophila DC2201] Length = 478 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 93/475 (19%), Positives = 170/475 (35%), Gaps = 72/475 (15%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M ++ H L + L + + +VGG VRD L+ D+D T PD+ + Sbjct: 5 MTQLLDTSSLHPVSL-ELGRLFERAGHELSLVGGPVRDLLLGREALDLDFTTDASPDQTL 63 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLR 119 + +GTI + ++TT R++ G R V F D D R Sbjct: 64 AVIRDWADAHWEIGRDFGTIGMRKAGMQLEVTTYRAEAYDPGSRKPTVAFGDDLTEDLRR 123 Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NA+ G +++D GG+ DL ++ G +D LR++R RF + G Sbjct: 124 RDFTVNAMALRLPGLELVDPFGGIRDLHAGVLRTPGTPEDSFTDDPLRMMRAARFTSQLG 183 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + A + ++I+S+ER+ E+ KL+ +P I M + G+ + + +V Sbjct: 184 -LTVAEPVREAMTAMAQRIEIVSAERVREELVKLVCGAHPRRGIELMVDTGLAQIVLPEV 242 Query: 239 QEISLD----------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSIL 279 + L+ + Q E E + D +LRF L+ K + Sbjct: 243 PALQLETDEAHHHKDVYQHSLTVMEQAAEKETGPDGPVPAPDFVLRFAALMHDVGKPATR 302 Query: 280 SMA----------------------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPE 312 K + + + + + Sbjct: 303 RFEPSGAVSFRHHEVVGAKLTRKRMKALRFDNDTVKKVTRLVELHMRFYGYGEADWTDSA 362 Query: 313 IKKLFYLYGDKVMI-------------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 +++ GD++ + LA HY+ L + + L++ + Sbjct: 363 VRRYVRDAGDELERLHRLTRSDVTTRNRRKASRLAGHYDELERR-----IAQLAEQEQLQ 417 Query: 360 KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLS---QEDLHHLLRK 410 L G +++ GIPPG +VG + ++ +E L R+ Sbjct: 418 AVRPELDGQQIMEILGIPPGPQVGRAYAFLLEMRLDEGAVGEDVARERLLRWARE 472 >gi|297627555|ref|YP_003689318.1| tRNA nucleotidyltransferase PcnB [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923320|emb|CBL57920.1| tRNA nucleotidyltransferase PcnB [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 496 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 92/463 (19%), Positives = 173/463 (37%), Gaps = 72/463 (15%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 +L +K ++ +VGG+VRD+L+ D+D T+ PD R+ + V +GT Sbjct: 31 ALFHKAGEELYLVGGSVRDALLGRLGHDLDFTTSADPDTTERLLHRFSSAVWTVGKEFGT 90 Query: 80 IKIIC----RKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 I + +ITT R+D D R V + + + D +RRDFT+NA+ D K Sbjct: 91 IGASKKSNGHELQIEITTFRADAYEPDSRKPIVAYGDNVQDDLVRRDFTVNAMAIDVHSK 150 Query: 135 -VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +D GG+ DL + ++ +D LR++R RF A G K +D A Sbjct: 151 AFVDPHGGIRDLAAKVLRTPTAPEISFSDDPLRMMRACRFAAQLGFK-VDPVTFNAMKAM 209 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-------- 245 + ++I+S ER+ E++KLL A P + + G+ + ++ + L++ Sbjct: 210 HERIEIVSPERVRDELSKLLLADAPRPGLNLLVASGLADIVLPELPAMRLERDEHFRHKD 269 Query: 246 --------LSQVIEAEQV---------FEWKIDSLLRFIVLISWQDKKS----------- 277 L Q I E+ + D ++R L+ K + Sbjct: 270 VYEHSLTVLDQAIALEKARDYKDGKPNPHHQPDLVIRLAALLHDIGKPATRGLDGDKVTF 329 Query: 278 ----------ILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGD 322 + P+ + + + + + + +++ GD Sbjct: 330 HHHDIVGAKLARKRLRALHYPKAVVDAVGQLIEQHLRFHGYGEASWTDSAVRRYVRDAGD 389 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK 372 + + L I + + + ++ K L GD+++ Sbjct: 390 Q--LEHLHILTRSDCTTRNARKADTLRRAYDELEARIDELAATEELKSIRPDLNGDEIMT 447 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 GI PG +VG H ++ L + L++ A+ Sbjct: 448 ILGIAPGPQVGRAYQHMLSVRMDQG-PLDHDAAVAELKRWWAA 489 >gi|253988289|ref|YP_003039645.1| poly(A) polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779739|emb|CAQ82900.1| poly(A) polymerase [Photorhabdus asymbiotica] Length = 523 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 149/394 (37%), Gaps = 43/394 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK + +VGG VRD L+ +D DIAT P++V ++F R Sbjct: 101 SENALKVLYRLNKSGFDAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRL--- 157 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117 + I+ + ++ T R G + + D+ Sbjct: 158 -VGRRFRLAHIMFGPEVIEVATFRGPHEQTDANNEKNQSQQAQSGMLLRDNTFGSIEEDA 216 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 +RRDFTIN+LY + DYVGGLNDL I+ IGD R ED +R+LR RF + Sbjct: 217 MRRDFTINSLYYGINDFSLRDYVGGLNDLETGVIRLIGDPETRYREDPVRMLRAIRFASK 276 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I D + L + R++ E KLL+ + + +F+ +F Sbjct: 277 LN-MTISEDTAEPISRLAFLLSHIPPARLFEESLKLLQTGQGYSTYKRLREYHLFQPLFP 335 Query: 237 DVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285 V+ E L+Q+ + + + +++ F ++ + + ++++ Sbjct: 336 LVERYFTANNDSPMEHMLNQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQES 395 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIFL 333 L + L + ++++IP+ +L +G + Sbjct: 396 GLTYYDSFALAMNDILDEQCQSIAIPKRLTTIMRDIWQLQLRLPRRHGKRANKLMEHPKF 455 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 Y+ L + L D+ HW + Sbjct: 456 RAAYDLLELRANVENRNELKDLAHWWGEFQQVNA 489 >gi|85711815|ref|ZP_01042871.1| Poly(A) polymerase [Idiomarina baltica OS145] gi|85694430|gb|EAQ32372.1| Poly(A) polymerase [Idiomarina baltica OS145] Length = 454 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 133/342 (38%), Gaps = 36/342 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L L+ ++ +VGG VRD L+ + +D D+ T P++V ++F Sbjct: 25 ISRKNISD-NALKVLYRLHNSGFEAYLVGGCVRDLLLGIQPKDFDVTTNATPEQVKKLFR 83 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-------------------GRYA 105 R + I+ K ++ T R D G Sbjct: 84 NCRL----VGRRFRLAHIVFGKDIIEVATFRGHHKEDDSEAASQTRKQPTAKTDEQGFLV 139 Query: 106 KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + + D+ RRDFT+NA+Y + + D+ GG DL I+ IGDA R ED Sbjct: 140 RDNVYGSIEEDAERRDFTVNAMYYNIADFCIYDFAGGKKDLDAGVIRLIGDAEQRYREDP 199 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 +R+LR RF +D ++ L+ + R++ E K+ A Sbjct: 200 VRMLRAIRFATKLN-MQMDKHVQEPIVEMASLLRNIPPARLFDEFLKMFMAGKASANFEM 258 Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF----------EWKIDSLLRFIVLISWQD 274 M +F+++F ++ D+ S I Q E ++ V++ + Sbjct: 259 MVQHNLFQQMFPVLKTYLKDEQSPAIALIQRALSDTDKRVNNEQRVTPAYLLAVMLWYPM 318 Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 + + + LP + S + +T+++P+ L Sbjct: 319 EARRSQLEVESGLPPMDALNIASADVIDRQNQTVAVPKRFSL 360 >gi|153809425|ref|ZP_01962093.1| hypothetical protein BACCAC_03739 [Bacteroides caccae ATCC 43185] gi|149128011|gb|EDM19233.1| hypothetical protein BACCAC_03739 [Bacteroides caccae ATCC 43185] Length = 477 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 86/466 (18%), Positives = 175/466 (37%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGQIAETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ + + R + +V + Sbjct: 61 AMAEALGKRLGRGAHVSVFKNFGTAQVKYKGTEVEFVGARKESYHRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL G+++D GG+ D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKARFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF ID D + + ++ + I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLNFY-IDDDTFESLCRNRERINIISRERIADELNKIILSPVPSKGFIDLERSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS 280 IF ++ + D +E K D+L LR+ L+ K + Sbjct: 240 SLIFPELAALQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKR 299 Query: 281 ----------------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMVPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRIRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 PVSGEEIMETFGLQPCREVGALKSAIKDAILDGVIPNEYEAAHAFM 464 >gi|262204638|ref|YP_003275846.1| tRNA adenylyltransferase [Gordonia bronchialis DSM 43247] gi|262087985|gb|ACY23953.1| tRNA adenylyltransferase [Gordonia bronchialis DSM 43247] Length = 489 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 87/451 (19%), Positives = 177/451 (39%), Gaps = 56/451 (12%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 +L + +VGG+VRD+++ D+D T P++++ + + I +GT Sbjct: 40 ALFTDAGHELYLVGGSVRDAILGRLGNDLDFTTDARPEQILELVGGWADAIWDVGIEFGT 99 Query: 80 IKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGK 134 + + + +ITT R+D GR +V F D +RRDFTINA+ AD Sbjct: 100 VGVRKGEAMIEITTFRADAYDRVGRNPEVTFGDTLDGDLVRRDFTINAMAVRVDADGAQD 159 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 ++D + G+ L I +D LR+LR RF + G + + A + Sbjct: 160 LLDPLDGVTALLAGVIDTPAAPEDSFGDDPLRMLRAVRFISQLGFR-LAPRVADAITRMA 218 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLSQ---- 248 ++ +++ER+ E++KL+ + P++AI M G+ + + +V ++++D+ Q Sbjct: 219 DQIERITAERVRMELDKLICGEYPIDAIDAMVETGLAQHVLPEVPGMKLTIDEHHQHKDV 278 Query: 249 -------VIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------------IL 279 + +A + E D +LR+ L+ K + + Sbjct: 279 YQHSLTVLRQAIDLEEGDPDLVLRWAALLHDIGKPATRRHEPGGGVSFHHHEVVGAKMVR 338 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKIFLALH 336 + P+ + + + + + Y+ ++ +L + Sbjct: 339 KRMRALKYPKAVVSDVADLVYLHLRFHGYGDGTWTDSAVRRYVTDAGPLLGRLHKLVRAD 398 Query: 337 YNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 + + Q + + L G+ +++ G+PPG VG Sbjct: 399 CTTRNKRRARRLQQNYDHLEQRIADLAAAEDLDRVRPDLDGNAIMELLGLPPGPLVGEAW 458 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + K+ ++ LS E+ LR+ A+ Q Sbjct: 459 RYLKELRLDRG-PLSHEEAEDALREWWAARQ 488 >gi|221632084|ref|YP_002521305.1| putative RNA nucleotidyltransferase [Thermomicrobium roseum DSM 5159] gi|221155983|gb|ACM05110.1| putative RNA nucleotidyltransferase [Thermomicrobium roseum DSM 5159] Length = 485 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 90/452 (19%), Positives = 169/452 (37%), Gaps = 47/452 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 HD + + + +VGG VRD L+ V D+D AT+ P+ + + Sbjct: 23 PALHDIN-DRLARSFAAAGHELYLVGGVVRDLLLGRPVTDLDYATSAHPEETRCLGEEAG 81 Query: 68 Y-KVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTIN 125 + ++GTI ++ +ITT R++ R V F D RRDFT+N Sbjct: 82 AESIYTVGEAFGTIGLVFAGVTVEITTYRTEWYPTLDRRPAVRFGDSLLEDLARRDFTVN 141 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ G++ID GG DL R ++ +GD R ED LRILR RF A G +++ Sbjct: 142 AMAVHAVTGELIDPYGGQLDLERRLLRAVGDPFERFREDPLRILRAARFAAQLG-FEVEA 200 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 +A + L+ +S ERI E+N+LL A P + M + + ++ ++ D Sbjct: 201 QTRLAMQELASELQRVSVERIALELNRLLVAPEPDRGLELMRQTRLLPVVLPELVPLAED 260 Query: 245 QLSQVI-----EAEQVFEWKIDSL-LRFIVLISW----------------------QDKK 276 + QV L +R+ L+ + + Sbjct: 261 PGDRRHKDIWRHTLQVVRQSPPRLAVRWAALLHDAAKPMTRTIDEQGEVHFFGHELKGAE 320 Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFN----QKTLSIPEIKKLFYLYGDKVMIAKLKIF 332 + ++ + + + + +T + +++L GD + + Sbjct: 321 LARKVLRRLRQEKALIERVAQLVELHLRPAAYDETWTDSAVRRLMVEAGDLLEDLLDLVA 380 Query: 333 L--------ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383 + ++ L + + PL G +++ +G+PPG+ + Sbjct: 381 ADVTSARAWRRREARARIERLRAHIRRLEEEAALAQIKSPLDGHELMAIFGLPPGRWIAE 440 Query: 384 ILVHCKQEWINSSFQL-SQEDLHHLLRKLIAS 414 + + + I +E L + +A Sbjct: 441 VKNYLRDLVIEGQLAPGDKETARVLAERWVAE 472 >gi|298479673|ref|ZP_06997873.1| polyA polymerase family protein [Bacteroides sp. D22] gi|298274063|gb|EFI15624.1| polyA polymerase family protein [Bacteroides sp. D22] Length = 477 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 178/466 (38%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGQIAETADALGMECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ R + R + +V + Sbjct: 61 AMAEALGKRLGRGAHVSVFKNFGTAQVKYRGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL G+++D GG+ D++ +TI+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKARFGELVDPFGGMEDMKEKTIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF G ID D + + K+ ++I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLGFY-IDDDTFESLCRNKERIEIISRERIADELNKIILSPIPSKGFIDLERSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS--------- 271 IF + + D +E K D+L LR+ L+ Sbjct: 240 PLIFPEFAVLQGVETRNGRSHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPVTKR 299 Query: 272 -------------WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 + +K I + +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPHIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMMLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ +G+ P ++VG + K ++ E H + Sbjct: 419 PVSGEEIMEIFGLEPCREVGVLKSAIKDAILDGVIPNEYEAAHAFM 464 >gi|34581025|ref|ZP_00142505.1| poly(A) polymerase [Rickettsia sibirica 246] gi|28262410|gb|EAA25914.1| poly(A) polymerase [Rickettsia sibirica 246] Length = 418 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 132/444 (29%), Positives = 206/444 (46%), Gaps = 80/444 (18%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLM----NLSVQ---------------------------- 46 +SLLN+ ++ ++GG VRD+L+ N + + Sbjct: 1 MSLLNEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDTERRIAMYINVREDSSTGSTYK 59 Query: 47 -----------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 DIDIAT + P V I S + K IPT + +GTI I + F Sbjct: 60 LPLEASYPRDRLEKGSCDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITAILNNEKF 119 Query: 90 DITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNR 148 +ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL + ++ DY G DL+ Sbjct: 120 EITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQQE 179 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 + FIG+A +RI EDYLRILRFFRF ++Y + +D A K GLK LS ERI SE Sbjct: 180 KVVFIGEALYRIKEDYLRILRFFRFSSYYANQ-LDDGNFKACKALKDGLKTLSRERIKSE 238 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 ++K++ +K + M+ GI + IF +Q + EQ ++K++ + R+ + Sbjct: 239 MDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRYAL 291 Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFN----CNFNQKTLSIPEIKKLFYLYGDKV 324 L+ Q + L + + + ++S N FN K + + YL ++ Sbjct: 292 LLYCQKDLN-LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAARI 350 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNI 384 + L H + ++ +P F L G+D++ I KK+G Sbjct: 351 I------------GKLNHSQVKEFILKYDALL---RPKFQLNGNDLLNMNIEK-KKIGAK 394 Query: 385 LVHCKQEWINSSFQLSQEDLHHLL 408 L + K WI F+ S+ +L L Sbjct: 395 LEYLKNFWIEQDFKPSKLELLAKL 418 >gi|85859113|ref|YP_461315.1| poly A polymerase [Syntrophus aciditrophicus SB] gi|85722204|gb|ABC77147.1| poly A polymerase [Syntrophus aciditrophicus SB] Length = 495 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 93/433 (21%), Positives = 167/433 (38%), Gaps = 55/433 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L + ++ VGG VRD L + D DI T+ P+ + +F +T Sbjct: 71 AAGIVRRLKEAGHEAWFVGGCVRDYLRGVEAGDYDIVTSASPEAIQALFPRTVG----VG 126 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-G 133 I +G + +I ++ T RS + D LRRDFTINA+ D G Sbjct: 127 IRFGILIVIENGYSHEVATYRSP-------------GGYLEDVLRRDFTINAMLQDPDTG 173 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ID VGG DL R I+ +G R ED LR+LR RF A+ +++ + L A Sbjct: 174 RIIDEVGGRADLEGRVIRAVGRPDERFAEDRLRMLRAVRFAANLA-FSVEQETLEAIQAH 232 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS----------- 242 ++ +S ER+ E+ +LL + + G+ +E+ +V + Sbjct: 233 APEIQEVSVERVADELTRLLTLGGAGEGMRLLMKTGLLEELLPEVAAMRGVKQPPKFHPE 292 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS---------------------M 281 D + ++ + DS L + VL+ K + S + Sbjct: 293 GDVWTHTVKMLDLMSIPADSRLAWGVLLHDVGKPDVQSRDHRGIHFYGHVQQGEILAEGI 352 Query: 282 AKKFSLPREIRYFLISFFNCNF---NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 ++ PR ++ C+ N + + +K+L +++ ++ Sbjct: 353 LRRLRFPRADMECILGLIRCHMSFINVREMRTSRLKRLLRSPDFDLLLELHRLDCLGSNG 412 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 L + C + + +P L G D+++ G PG IL + +N S Sbjct: 413 VLDSYEYC-LQKQRELTDEQLRPPPLLRGKDLLEMGYLPGALFREILNAVEDAQLNGSIA 471 Query: 399 LSQEDLHHLLRKL 411 +E + + Sbjct: 472 TPEEARQLVKNRW 484 >gi|317475446|ref|ZP_07934710.1| poly A polymerase head domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908474|gb|EFV30164.1| poly A polymerase head domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 474 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 89/454 (19%), Positives = 174/454 (38%), Gaps = 57/454 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F D+ I ++ + +VGG VRD + +DID+ + +K + Sbjct: 13 FSDNIFGRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRLGR 72 Query: 70 VIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++GT ++ + R + T VV + D RRDFTINAL Sbjct: 73 GAHLSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPVVEDGSLEDDQNRRDFTINAL 132 Query: 128 YA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 + G+++D GG+ D+R +TI+ D +D LR++R RF ID Sbjct: 133 AVCLNRQRYGELVDPFGGMEDMREKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-ID 191 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-- 241 D + + K+ + I+S ERI E+NK+L + P ++ + G+ + IF ++ + Sbjct: 192 DDTFESLCRNKERISIISKERIADELNKILLSPVPSKGLIDLDRSGLLQLIFPELVALQG 251 Query: 242 --------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS------------ 280 D +E K D+L LR+ L+ K + Sbjct: 252 VENRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFHNH 311 Query: 281 ----------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKV 324 + ++ LP E ++ + ++ +++L + GD + Sbjct: 312 NFIGEKMIPEIFRRMKLPMNEKMKYVQKLVGLHMRPIVIADDVVTDSAVRRLLFEAGDDI 371 Query: 325 MIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YG 374 + + A + + F+ L+ L + + P++G++++K + Sbjct: 372 -DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKTFN 430 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +PP ++VG + K ++ E + Sbjct: 431 LPPCRQVGALKSAIKDAILDGVIPNDYEAARAFM 464 >gi|312888916|ref|ZP_07748477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Mucilaginibacter paludis DSM 18603] gi|311298606|gb|EFQ75714.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Mucilaginibacter paludis DSM 18603] Length = 472 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 98/463 (21%), Positives = 179/463 (38%), Gaps = 59/463 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M +QH F+ I S K E + ++GG VRD +N +DIDI Sbjct: 1 MKQHLQHPIFNI-----ISSAAQKMEVDAYVIGGFVRDLYLNRPSKDIDIVVVGNGIAFA 55 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + + ++GT + + + R + +V + D RR Sbjct: 56 EQVAAKLRVPLSVFKNFGTAMLKYQDMEIEFVGARKESYRSESRKPIVENGTLEDDQKRR 115 Query: 121 DFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL G++ID GG+ DL+N+ I+ D +D LRI+R RF + Sbjct: 116 DFTINALAIALHPKQFGQLIDPFGGITDLQNKLIRTPLDPVETFSDDPLRIMRAVRFASQ 175 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + ID L A + I+S ERI E+NK++ + P H++N G+ K IF Sbjct: 176 LNFQ-IDESALAAISTTASRISIVSQERITDELNKIILSPIPSIGFKHLFNTGLLKAIFP 234 Query: 237 DVQEIS----------LDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAK-- 283 + ++ D +E + + E D LR+ ++ K + + Sbjct: 235 QMVDLYGVDIIKGKGHKDNFYHTLEVLDHIAETTNDLWLRWAAILHDIAKPATKRFEEGH 294 Query: 284 --------------------KFSLPREIRYFLIS------FFNCNFNQKTLSIPEIKKLF 317 + LP + L+ Q ++ +++L Sbjct: 295 GWTFHGHEDKGARMVPKIFAQLKLPLNEKMKLVQKLVQLHLRPIVLAQDIITDSAVRRLL 354 Query: 318 YLYGDKV----MIAKLKIFLALHYNNLTHQ----DTCFILQVLSDIIHWKKPLFPLTGDD 369 + GD + ++ K I Y ++ L+ + + + P++G D Sbjct: 355 FEAGDDIESLMLLCKADITTKNEYKIKKYRQNFERVQEKLKQVEERDKIRNWQPPVSGLD 414 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410 +++ GI G++VG I ++ ++ S+E +++ + K Sbjct: 415 IMELFGIREGREVGIIKQKIREAILDGEISNSRETAINYAIEK 457 >gi|211638719|emb|CAR67336.1| poly(a) polymerase (ec 2.7.7.19) (pap) (plasmid copy number protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 494 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 149/394 (37%), Gaps = 43/394 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK + +VGG VRD L+ +D DIAT P++V ++F R Sbjct: 72 SENALKVLYRLNKSGFDAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRL--- 128 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117 + I+ + ++ T R G + + D+ Sbjct: 129 -VGRRFRLAHIMFGPEVIEVATFRGPHEQTDANNEKNQSQQAQSGMLLRDNTFGSIEEDA 187 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 +RRDFTIN+LY + DYVGGLNDL I+ IGD R ED +R+LR RF + Sbjct: 188 MRRDFTINSLYYGINDFSLRDYVGGLNDLETGVIRLIGDPETRYREDPVRMLRAIRFASK 247 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I D + L + R++ E KLL+ + + +F+ +F Sbjct: 248 LN-MTISEDTAEPISRLAFLLSHIPPARLFEESLKLLQTGQGYSTYKRLREYHLFQPLFP 306 Query: 237 DVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285 V+ E L+Q+ + + + +++ F ++ + + ++++ Sbjct: 307 LVERYFTANNDSPMEHMLNQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQES 366 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIFL 333 L + L + ++++IP+ +L +G + Sbjct: 367 GLTYYDSFALAMNDILDEQCQSIAIPKRLTTIMRDIWQLQLRLPRRHGKRANKLMEHPKF 426 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 Y+ L + L D+ HW + Sbjct: 427 RAAYDLLELRANVENRNELKDLAHWWGEFQQVNA 460 >gi|315646461|ref|ZP_07899579.1| Polynucleotide adenylyltransferase region [Paenibacillus vortex V453] gi|315278104|gb|EFU41424.1| Polynucleotide adenylyltransferase region [Paenibacillus vortex V453] Length = 434 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 92/417 (22%), Positives = 184/417 (44%), Gaps = 24/417 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L + ++ VGG VRD M V D+DI T+ LP+ +F KV+PT I Sbjct: 23 DVIRTLLQHGYEAYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFP----KVVPTGIK 78 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + F++TT R + D R+ +V F RD K D RRDFT+NA+ G Sbjct: 79 HGTVTVLMEGQAFEVTTYRVESGYEDHRHPTEVAFVRDVKEDLTRRDFTMNAMARGIDGS 138 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GG D+ + I+ +GDA R ED LR++R RF + +G +I + + Sbjct: 139 WVDPFGGREDIDKQVIRCVGDARLRFREDALRMVRCIRFASVFG-FSIALHTWKGILSER 197 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L ++ ERI SE K++ PL + G++ + D ++EA Sbjct: 198 DTLSWIAMERIRSEFEKIMTGPTPLRGLEMFLRSGLYSRMKAPFPYTGHDV--PIMEAIH 255 Query: 255 VFEWKIDSLLRFIVLIS-WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 + S+ ++L++ + + + ++ + R ++ + + ++ + Sbjct: 256 RTAPEHSSIRWSLLLLACGISAQEAERLLRSWTFSNKQREAIVKLLALHESYAQVNEEKE 315 Query: 314 K----------KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---LSDIIHWKK 360 K KL +G + + L++ A+ + + Q+ L ++ Sbjct: 316 KEKQSGRLTWIKLVLAHGAEAAHSWLQMQTAMEWTGAATVSPAVMEQLEGWLQELQIRNL 375 Query: 361 PLFPLTG-DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +TG + ++ G +G +L ++ +E L + ++++ +++ Sbjct: 376 KDLNITGSELLLALDKRGGAWLGELLGELLEKAAAGLINNDKESLINEAKRVVINNE 432 >gi|160874003|ref|YP_001553319.1| poly(A) polymerase [Shewanella baltica OS195] gi|160859525|gb|ABX48059.1| poly(A) polymerase [Shewanella baltica OS195] gi|315266232|gb|ADT93085.1| poly(A) polymerase [Shewanella baltica OS678] Length = 513 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 107/249 (42%), Gaps = 17/249 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F Sbjct: 70 TISRKQIS-ENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLF 128 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDW 113 R + I+ + ++ T R +GR + + Sbjct: 129 RNCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEI 184 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFT+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR R Sbjct: 185 DEDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVR 244 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F I++ + LK + + R++ E+ KL A L M +F Sbjct: 245 FATKLN-MGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFA 303 Query: 233 EIFLDVQEI 241 +F V + Sbjct: 304 PLFPQVAAL 312 >gi|313677488|ref|YP_004055484.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Marivirga tractuosa DSM 4126] gi|312944186|gb|ADR23376.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Marivirga tractuosa DSM 4126] Length = 471 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 85/445 (19%), Positives = 173/445 (38%), Gaps = 59/445 (13%) Query: 17 NILSLLNKG----EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY--KV 70 + L+ K ++ +VGG VRD ++ +DID + + + K Sbjct: 11 PVFELVKKSAHSLGIEAYVVGGYVRDLILKRPSKDIDFVCVGSGIDLAKEVAANIGSKKK 70 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++GT I + R + +V + D RRDFTINAL Sbjct: 71 FQVFKNFGTASIHHGDWELEFVGARKESYQRDSRKPIVEEGTLEDDQNRRDFTINALAIS 130 Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 G +ID GG+ DL+ + IK + +D LR++R RF + +I + Sbjct: 131 LNEENYGALIDPFGGVKDLKKKIIKTPLEPDVTFSDDPLRMIRAIRFASQLN-FDIAPNT 189 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ 245 + IK + LKI+S+ERI E+NK++ + P +Y+ + + F ++ E+ +D+ Sbjct: 190 FDSIIKNAERLKIISAERITDELNKIILTEKPSYGFKLLYHAQLLDKFFPEIVELQGVDE 249 Query: 246 LSQVIEAEQVFE----------WKIDSLLRFIVLISWQDKKSIL---------------- 279 + + + + D LR+ ++ K + Sbjct: 250 KNGFKHKDNFYHTLQVLDNTAEYGGDLWLRWAAILHDIAKPATKRFNPKQGWTFHGHEDK 309 Query: 280 ------SMAKKFSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLYGDKV--M 325 + K+ LP + L+ + ++ +++L + GD + + Sbjct: 310 GARMVPKIFKRMKLPLNEKMKYVQKLVLLHLRPIPLVRDNITDNAVRRLLFEAGDDIEDL 369 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKKPLFPLTGDDVVK-YGIPPG 378 + + + N Q +V + + + P++G+D++K + + P Sbjct: 370 MTLCRADVTSKNMNKVKQFRANFDKVEQKMKEVEENDQVRNFQPPVSGEDIMKAFDLSPC 429 Query: 379 KKVGNILVHCKQEWINSSFQLSQED 403 K++G I K+ ++ Q ++E+ Sbjct: 430 KEIGIIKSEIKEAILDGEIQNNREE 454 >gi|323491995|ref|ZP_08097160.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546] gi|323313724|gb|EGA66823.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546] Length = 455 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 132/308 (42%), Gaps = 32/308 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L L+ ++ +VGG VRD L++ +D DIAT P+++ ++F Sbjct: 31 ISRKQISD-NALKVLYRLHGAGFEAYLVGGGVRDLLLSQQPKDFDIATNATPEQIRQLFK 89 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R +G + Sbjct: 90 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKEGMLLRDNVYGTID 145 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF Sbjct: 146 EDAERRDFTVNAMYYNIGDYSIHDYAGGIEDLEDKLIRLIGDPDTRYREDPVRMLRAIRF 205 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + +I+ D + L+ + + R++ E K+L++ + L M +F++ Sbjct: 206 AVKL-DFDIEEDTAAPIEELATLLQEIPAARLYEESLKMLQSGHGLETYHLMREYNLFQQ 264 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKID-------------SLLRFIVLISWQDKKSILS 280 +F + E + S EQ+ + +D F ++ + ++ Sbjct: 265 LFPTIAEFFTEDYSS--PTEQMLDLVLDSTDQRIEEGKRINPAFMFAAMLWYPLQEKAKQ 322 Query: 281 MAKKFSLP 288 + +K L Sbjct: 323 LMEKRKLS 330 >gi|152999383|ref|YP_001365064.1| poly(A) polymerase [Shewanella baltica OS185] gi|304411109|ref|ZP_07392725.1| poly(A) polymerase [Shewanella baltica OS183] gi|307301768|ref|ZP_07581526.1| poly(A) polymerase [Shewanella baltica BA175] gi|151364001|gb|ABS07001.1| poly(A) polymerase [Shewanella baltica OS185] gi|304350644|gb|EFM15046.1| poly(A) polymerase [Shewanella baltica OS183] gi|306913806|gb|EFN44227.1| poly(A) polymerase [Shewanella baltica BA175] Length = 513 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 107/249 (42%), Gaps = 17/249 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F Sbjct: 70 TISRKQIS-ENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLF 128 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDW 113 R + I+ + ++ T R +GR + + Sbjct: 129 RNCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEI 184 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFT+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR R Sbjct: 185 DEDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVR 244 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F I++ + LK + + R++ E+ KL A L M +F Sbjct: 245 FATKLN-MGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFA 303 Query: 233 EIFLDVQEI 241 +F V + Sbjct: 304 PLFPQVAAL 312 >gi|320155390|ref|YP_004187769.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O] gi|319930702|gb|ADV85566.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O] Length = 453 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + +L L+ + +VGG VRD L+ S +D DIAT P+++ ++F Sbjct: 29 ISRKQISD-HALKVLYRLHGAGFDAFLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFR 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ ++ ++ T R +G + Sbjct: 88 NCRL----IGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTID 143 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 144 EDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIRF 203 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+ D + L+ + + R++ E KLL++ + L M +F++ Sbjct: 204 AAKL-DFDIEEDTAAPIEEMAYLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F + + S +AEQ+ + +DS Sbjct: 263 MFPAISAYFTEDYSS--KAEQMLDLVLDS 289 >gi|330719089|ref|ZP_08313689.1| tRNA nucleotidyltransferase/poly(A) polymerase [Leuconostoc fallax KCTC 3537] Length = 342 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 11/345 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 IL LN+ ++ VGG+VRD+L+ + D+DIAT+ P+ V RIF+ T + T Sbjct: 3 ASPILKKLNEAHFEAYFVGGSVRDTLLGQPIHDVDIATSAFPEEVKRIFTHT----VDTG 58 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ I+ + ++ITT R++ TD R V F R D RRDFTINAL ++ Sbjct: 59 IQHGTVMILDHGEGYEITTFRTESGYTDFRRPDHVRFVRSLSEDLKRRDFTINALAMTRE 118 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+VID GLNDL I+ +GD R ED LR++R RF A G I+ A Sbjct: 119 GEVIDLFDGLNDLNAGIIRAVGDPTERFGEDALRMMRALRFSAQLG-FTIEEQTCHALAT 177 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV-IE 251 L+ ++ ERI E KL+ KN +AI +F + +++ L + + Sbjct: 178 LVPNLEKIAVERIQVEFEKLMMGKNAAHAIELGITHQLFNYLPSNMRHWRLSIWQDIRHD 237 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT---L 308 + I + ++ + S ++ + ++ +++ L R I + ++ + Sbjct: 238 LLENQPVTIAGIWSYLAVKSGENSHEVNTLLREWKLSRTIMRTTTAIVPVVYHIQAGIIK 297 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 + + Y ++A L I A+ + + ++ Sbjct: 298 AWDLFQVADYQDTLLEVLALLPIRSAVIGEVKKYYPIYLLSMPMN 342 >gi|317046958|ref|YP_004114606.1| poly(A) polymerase [Pantoea sp. At-9b] gi|316948575|gb|ADU68050.1| poly(A) polymerase [Pantoea sp. At-9b] Length = 478 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 81/407 (19%), Positives = 145/407 (35%), Gaps = 54/407 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F R Sbjct: 54 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPEQMRKLFRNCRL--- 110 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117 + ++ + ++ T R D G + + D+ Sbjct: 111 -VGRRFRLAHVMFGPEVIEVATFRGHHQMDEGEEDRNSSQRGQNGMLLRDNIFGSIEDDA 169 Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRD TIN+LY V DYVGGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 170 QRRDLTINSLYYSVADFTVRDYVGGLQDLQQGIIRLIGDPETRYREDPVRMLRVVRFAAK 229 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 E I + + L + R++ E KLL+A M +F+ +F Sbjct: 230 L-EMRIAPETAEPIPRLATLLHDIPPARLFEESLKLLQAGYGYRTYQMMREYQLFQPLFP 288 Query: 237 DV-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA--- 282 + E L Q+ + + + +++ F + + +S +A Sbjct: 289 TLTRGFTEHSDSPMERMLAQVLKNTDTRLQNDMRVNPAFLFAAMFWYPQLESAEQIAQES 348 Query: 283 --------------------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + ++P+ I + + KL Sbjct: 349 GLTYYDAFALAMNETLDEACRALAIPKRITTLIRDIWQLQLRMSRRHGKRAWKLMEHPKF 408 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + L + + N + T + + + +K + GDD Sbjct: 409 RAAYDLLALRAEVENNPELQRLTQWWGEFQAAAPTQQKTMLNTLGDD 455 >gi|217972060|ref|YP_002356811.1| poly(A) polymerase [Shewanella baltica OS223] gi|217497195|gb|ACK45388.1| poly(A) polymerase [Shewanella baltica OS223] Length = 513 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 107/249 (42%), Gaps = 17/249 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F Sbjct: 70 TISRKQIS-ENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLF 128 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDW 113 R + I+ + ++ T R +GR + + Sbjct: 129 RNCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEI 184 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFT+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR R Sbjct: 185 DEDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVR 244 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F I++ + LK + + R++ E+ KL A L M +F Sbjct: 245 FATKLN-MGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFA 303 Query: 233 EIFLDVQEI 241 +F V + Sbjct: 304 PLFPQVAAL 312 >gi|288803036|ref|ZP_06408472.1| polyA polymerase family protein [Prevotella melaninogenica D18] gi|288334553|gb|EFC72992.1| polyA polymerase family protein [Prevotella melaninogenica D18] Length = 474 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 86/465 (18%), Positives = 176/465 (37%), Gaps = 62/465 (13%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + ++ FH I + +K + +VGG VRD + DID+ +V Sbjct: 9 LAQLIDKDIFHH-----ISTAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K ++GT ++ R + R + + +V + D Sbjct: 64 SELKAILGKKAHLSVFRNFGTAQVKYRNIEVEFVGARKESYSHDSRKPIVEDGTLEDDQN 123 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINA+ G+++D GG++DL + I+ D +D LR++R RF Sbjct: 124 RRDFTINAMAVCLNKARFGELVDPFGGIDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + + +KI+S ERI E+NK++ P + +Y G+ + I Sbjct: 184 TQLNFF-IEDETFEALERNAERIKIISGERIEEELNKIMMTATPSKGFIELYRCGLLQLI 242 Query: 235 FLDVQEISL----------DQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS--- 280 ++ + + + +E D+L LR+ L+ K Sbjct: 243 LPELVALDVVDTRNGRAHKNNFYHTLEVLDNICKHTDNLWLRWSALLHDVGKAKCKRWDA 302 Query: 281 -------------------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----IKK 315 + ++ LP + + ++ + + ++ E +++ Sbjct: 303 TVGWTFHNHNFVGAKMVPTIFRRLKLPMDSKMKYVQKQVDLHMRPIAIADEEVTDSAVRR 362 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L GD + + + A + + F+ L+ L D + + + Sbjct: 363 LMNDAGDDI-DDLMTLCEADITSKNAVRKQRFLDNFRIVREKLKDLKDRDYKRLLQPCVD 421 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G+++++ + P ++VG + K +++ +E L LLR+ Sbjct: 422 GNEIMEMFNLKPSREVGVLKKTLKDAVLDNKVPNEREPLLALLRE 466 >gi|213966257|ref|ZP_03394441.1| tRNA adenylyltransferase [Corynebacterium amycolatum SK46] gi|213951109|gb|EEB62507.1| tRNA adenylyltransferase [Corynebacterium amycolatum SK46] Length = 480 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 86/467 (18%), Positives = 182/467 (38%), Gaps = 61/467 (13%) Query: 1 MVSIVQHKWFHDSDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 M+++ +S++++ + + + + +VGG+VRD+L+ D+D T P+ Sbjct: 1 MLAVADQAIAKESEILDSLAAAFSAAGHRLYLVGGSVRDALLGRLGVDLDFTTDARPEVT 60 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSL 118 I V T I +GT+ + +ITT R+D R +V F + D + Sbjct: 61 RAILDDWADIVWDTGIEFGTLSAERHGRQMEITTFRADTYDQVSRNPEVTFGDTLEGDLI 120 Query: 119 RRDFTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDF N++ + G +D +GG DL + G +D LR+LR RF Sbjct: 121 RRDFRCNSIAVELHGDGTRTFLDPLGGFEDLVAGVLDTPGAPEISFGDDPLRMLRACRFA 180 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + G ++ L A + + ++ ERI +E+NKL+ +P I M G+ + Sbjct: 181 SQLG-FDVAPRVLKALKEMSSEIDRITVERISTELNKLILGADPSRGIDLMVESGLADRV 239 Query: 235 FLDVQEISLDQ-------------LSQVIEA-EQVFEWKIDSLLRFIVLISWQDKKS--- 277 ++ ++ + Q L + +A +Q + D +LR+ L+ K + Sbjct: 240 LPEISDMRMTQDEHRQHKDVYQHSLQVMRQAIDQEEPGEPDLVLRWAALLHDCGKPATRA 299 Query: 278 -------------------ILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEI 313 + +K P++ + + + + + + Sbjct: 300 YNEQGNVTFYQHEVVGAKLVRRRLRKLKFPKKTNHEISQLVYLHMRFHGYGEGKWTDSAV 359 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV----------LSDIIHWKKPLF 363 ++ GD ++ +L + + + + L++ + Sbjct: 360 RRYVNDAGD--LLERLNKIVRADCTTRNRRKAARLARACDSLEARIKELAEQEDLARVRP 417 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L G+++++ + PGK+VG + K+ + S ++ + L + Sbjct: 418 DLDGNEIMEILDLKPGKEVGQAWNYLKELRLESGPLEREDAILALKK 464 >gi|294142393|ref|YP_003558371.1| polyA polymerase [Shewanella violacea DSS12] gi|293328862|dbj|BAJ03593.1| polyA polymerase [Shewanella violacea DSS12] Length = 435 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 16/245 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + +F R Sbjct: 2 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKGLFRNCRL--- 58 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ TLR + +GR + D+ RRD Sbjct: 59 -IGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNAEGRLLRDNVYGTIDEDAERRD 117 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR RF Sbjct: 118 FTVNALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVRFATKLN-M 176 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I+ D + LK + + R++ EI KL + LN M + G+F+ +F V Sbjct: 177 TIEKDTAAPISELAPLLKDIPAARMYEEILKLFFNGHALNNFNMMRDLGLFEPLFPLVNS 236 Query: 241 ISLDQ 245 +D+ Sbjct: 237 QLVDE 241 >gi|239948431|ref|ZP_04700184.1| poly(A) polymerase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922707|gb|EER22731.1| poly(A) polymerase [Rickettsia endosymbiont of Ixodes scapularis] Length = 436 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 134/442 (30%), Positives = 204/442 (46%), Gaps = 72/442 (16%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMN---------------------------------- 42 ILSLLN+ ++ ++GG VRD+L++ Sbjct: 17 KILSLLNEKG-QARLIGGCVRDALLDLLHNEANKEEFEGDTERRTAAYIDVREDSSTGST 75 Query: 43 ---------------LSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 DIDIAT ++P V I S + K IPT + +GTI I + Sbjct: 76 YKLPLEASYPRDLLEKDSYDIDIATNLIPSEVTNILSGAKIKTIPTGLKFGTITAILNNE 135 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLR 146 F+ITTLR D+ +GR+AKVVFT D+ D+ RRDFTINAL + ++ DY G DL+ Sbjct: 136 KFEITTLRKDIECNGRHAKVVFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQ 195 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK LS ERI Sbjct: 196 QEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGSFKACKALKDGLKTLSRERIK 254 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 SE++K++ +K + M+ GI + IF +Q + EQ ++K++ R+ Sbjct: 255 SEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELATRY 307 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 +L+ Q + L + + R ++S N N+ +I +I Y Sbjct: 308 ALLLYCQKDLN-LKVFLDWKFSRHEAMQILSITNF-LNEAKFNIKKIWFKKKNY------ 359 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 K + A L H + ++ +P F + G+D++ I K++G L Sbjct: 360 -KEYLLAASIIGKLNHSQAKEFILKYDALL---RPKFQVNGNDLLNMNIEK-KEIGAKLE 414 Query: 387 HCKQEWINSSFQLSQEDLHHLL 408 + K WI F+ S+ +L L Sbjct: 415 YLKNFWIEQDFKPSKLELLDKL 436 >gi|118471508|ref|YP_891120.1| tRNA adenylyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118172795|gb|ABK73691.1| tRNA adenylyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 480 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 90/451 (19%), Positives = 177/451 (39%), Gaps = 57/451 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIP 72 L + ++ + +VGG+VRD+L+ D+D T P+++ + + Sbjct: 25 LRELGAVFAAAGHELYLVGGSVRDALLGRLTENSDLDFTTDARPEQMQKFLRGWSDALWD 84 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY--- 128 T I +GTI + +ITT R+D R V F + D +RRDFTINA+ Sbjct: 85 TGIEFGTIGVGKGDDRLEITTFRADSYDQVSRNPTVEFGDNLGDDLVRRDFTINAMAVRI 144 Query: 129 -ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 AD G+ D +GGL R++ + +D LR+LR RF + G ++ L Sbjct: 145 TADGPGEFHDPLGGLAAARDKVLDTPSAPEVSFGDDPLRMLRAARFVSQLG-FSVAPRVL 203 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE--ISLDQ 245 A I+ L+ +++ER+ +E++KLL +P+ I M G+ + +V E +++D+ Sbjct: 204 EALIEMAPQLERITAERVAAELDKLLLGADPVAGIDLMVQTGMGAVVLPEVGEMRMAIDE 263 Query: 246 LSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS----------------- 277 Q + +A + + D +LR+ L+ K + Sbjct: 264 HHQHKDVYWHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPATRKHEPDGGVSFHHHEV 323 Query: 278 -----ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKL 329 + + +++ + + + Y+ ++++L Sbjct: 324 VGAKMVRKRMRALKYSKQMVEDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLSRL 383 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 + + + D+ ++ L G+++++ GIPPG Sbjct: 384 HKLVRADCTTRNKRRAARLRANYDDLEARIAELAAKEDLQRVRPDLDGNEIMQILGIPPG 443 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +VG + K+ + E + LL+ Sbjct: 444 PQVGEAWKYLKELRLERGPLSHDEAVDELLK 474 >gi|261250263|ref|ZP_05942839.1| poly(A) polymerase [Vibrio orientalis CIP 102891] gi|260939379|gb|EEX95365.1| poly(A) polymerase [Vibrio orientalis CIP 102891] Length = 453 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 137/332 (41%), Gaps = 32/332 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 29 ISRKQISD-NALKVLYRLNGAGFDAYLVGGGVRDLLLGQQPKDFDIATNATPEQIRQLFK 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R +G + Sbjct: 88 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPNKNVSQQSKEGMLLRDNVYGTID 143 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NA+Y + + DY GG DL ++ I+ +GD R ED +R+LR RF Sbjct: 144 EDAERRDFTVNAMYYNIGDYSIHDYAGGHEDLEDKLIRLLGDPETRYREDPVRMLRAIRF 203 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + +I+ D + L+ + + R++ E K+L++ + L M +F++ Sbjct: 204 AVKL-DFDIEEDTAAPIEEMATLLQDIPAARLYEESLKMLQSGHGLETYHLMREYNLFQQ 262 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKID-------------SLLRFIVLISWQDKKSILS 280 +F + E ++ EQ+ + +D F ++ + ++ Sbjct: 263 LFPTIAEFFTEEYDS--PTEQMLDLVLDSTDQRIEEGKRINPAFMFAAMLWYPLQEKAKQ 320 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + L S + + +T++IP Sbjct: 321 LMETRKLSSYDAIMEASNYILDDQVRTIAIPR 352 >gi|237741122|ref|ZP_04571603.1| poly(a) polymerase [Fusobacterium sp. 4_1_13] gi|229430654|gb|EEO40866.1| poly(a) polymerase [Fusobacterium sp. 4_1_13] Length = 451 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 105/442 (23%), Positives = 184/442 (41%), Gaps = 55/442 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ Y T Sbjct: 14 IKILNKLNKYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYRTLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D + KV F D + D RRDFTINA+ Sbjct: 71 SFGVLRIRIDNTDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 +Q+ +ID G D+ N+ I F+G+A RI+ED LR+LR FRF + + ++ + + Sbjct: 131 YNQKEGIIDLYNGQKDIENKIINFVGNAEERIIEDPLRVLRAFRFMSRL-KFSLSENTIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K+ LK + ERI E +KLL +N N + M + G+ + I + + Sbjct: 190 AIKKQKELLKNIPEERITMEFSKLLLGENIKNTLTLMKDTGVLELIIHEFKATYDFNQCN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSI---------------------- 278 +F D LR+ L+ K + Sbjct: 250 PHHNLDLFNHIINVVSKVPADLELRYSALLHDIAKPVVQTFDEEGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFN----------QKTLSIPEIKKLFYLYGDKVMIAK 328 + + LP ++ ++ + K LS L+ L + + Sbjct: 310 RDILTRMKLPVKLIDTVVEIIKKHMVLYRDVTDKKFNKLLSEMGYGNLWRLIEHCIADNE 369 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 K + N H+ + + + + + G D+++ G GK++G I Sbjct: 370 SKNNEVVSTENDLHE---RLKRAVEKQMQVTVNDLAINGKDLIELGFT-GKEIGQIKKDL 425 Query: 389 KQEWINSSFQLSQEDLHHLLRK 410 ++++ Q +E++ + +++ Sbjct: 426 LDKYLSEEIQNEKEEMLNYVKE 447 >gi|262276836|ref|ZP_06054629.1| tRNA-nucleotidyltransferase 1 [alpha proteobacterium HIMB114] gi|262223939|gb|EEY74398.1| tRNA-nucleotidyltransferase 1 [alpha proteobacterium HIMB114] Length = 414 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 110/399 (27%), Positives = 198/399 (49%), Gaps = 7/399 (1%) Query: 13 SDLINILSLLNKGEDKS--CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + + +++N E+ VGG VRD L + DID AT++ P++V +K+ Sbjct: 18 EEAKKVFNIINSDEEDVVCLFVGGCVRDLLFGKELSDIDFATSLEPEQVKNKLNKSNITY 77 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 T YG+IK+ K+F++ TLR D DGR+A V+FT+DW+ D+LRRD TIN++Y D Sbjct: 78 DDTFEKYGSIKVFINNKFFEVNTLRKDFNEDGRHASVMFTKDWRQDALRRDLTINSIYCD 137 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G+V D G++D++N IKFIGD RI EDYLR LR+FRF + + + + L Sbjct: 138 LDGRVYDPFKGVDDIKNGHIKFIGDPAKRIKEDYLRALRYFRFHIQFSKHDHEEYILKYI 197 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + + ++ LS ER+ E++K+L + + ++ +F ++ ++ ++ + + Sbjct: 198 SQNQDNIENLSKERLIDEMSKILISGLGYKLFSNNFSKDLFLSVYKGIKYLTRLEFKR-- 255 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 +++ + ++D + I L+ ++ K F+L EI+ L + F KT Sbjct: 256 -KKRILKKEVD-WVVLISLLLIDQTRNFERFVKDFNLSNEIKSRL-NNLQLQFTFKTTDT 312 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E + K +A + F+ Y L I K P F + + Sbjct: 313 IEKIENLKKAVLKYGVASVIDFIHFQYLVNEKYHYDLYESNLKVIKETKPPEFKFDANIL 372 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +K G +GN + KQ W+ +++++ +D+ ++ Sbjct: 373 IKKGFKEDANLGNAINFLKQRWVANNYEIRDKDIDDAIQ 411 >gi|307244320|ref|ZP_07526434.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptostreptococcus stomatis DSM 17678] gi|306492286|gb|EFM64325.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptostreptococcus stomatis DSM 17678] Length = 420 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 93/410 (22%), Positives = 184/410 (44%), Gaps = 21/410 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + ++ +VGG VRDS+M D DI T LPD ++ IF ++ IPT Sbjct: 16 ASQVIDAIQASGYEAFVVGGCVRDSVMGKIPHDWDITTNALPDDIVNIFPRS----IPTG 71 Query: 75 ISYGTIKIICRKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + F++TT R D + R V ++++ + D RRDFTINA+ + Q Sbjct: 72 IQHGTVTVLIDDEAFEVTTYRLDGDYLDMRRPRSVSYSQNLEDDLSRRDFTINAMAYNDQ 131 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GGL+D+ + ++ +G+ R ED LRILR RF A +I+ + + + I+ Sbjct: 132 VGLVDKFGGLDDIEKKLVRCVGNPDKRFNEDALRILRALRFSAKL-FFDIEGETMDSIIR 190 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ +S ERI +E ++ A N + + + I +F D + L++ + Sbjct: 191 NSVNIEKVSMERINTEFEGIIRAN--TNKLSLINDLDIRSYLFGDF-CFDEEDLTRAMIL 247 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-------NFNQ 305 E + + +I + + ++ K F ++ + +N + Sbjct: 248 EDIDSHEEYLQAAKRAMIFSHYEGDLKALLKFFKYSKKDMEKTLFIWNALRDHMYEDLLN 307 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII----HWKKP 361 + + +++ L + + + I + +DII + Sbjct: 308 ENATRDDLRLTIKYILRDAKDNILAKYAIYAKIIEKYANIGLIFNLFNDIIETGECFSVS 367 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 ++G D++ G+ GK+VG +L + I+ +E L ++RK+ Sbjct: 368 HLQISGRDIIDEGLARGKEVGILLEALLCQVISQPQLNEKERLLEMVRKI 417 >gi|71082812|ref|YP_265531.1| Poly(A) polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1062] gi|71061925|gb|AAZ20928.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1062] Length = 424 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 121/404 (29%), Positives = 197/404 (48%), Gaps = 20/404 (4%) Query: 14 DLINILSLLNKG--EDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKV 70 ++ I ++ + VGG VR ++N DID+A + P V +K K Sbjct: 30 EVSKIFEAIHSYSSNSEIRYVGGCVR-KIINKEAYDDIDLAVNLNPKEVCEALTKKDIKY 88 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + I +GTI + F+IT+LR D+ TDGR+AKV F+ WK D+ RRDFTIN++YAD Sbjct: 89 YESGIEHGTITALINDIKFEITSLRKDIDTDGRHAKVEFSDSWKEDASRRDFTINSIYAD 148 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +G + D G DL I FIG+ RI EDYLR+LR+ RFF Y + + D + A Sbjct: 149 IEGSLFDPFDGKKDLERGKINFIGNVETRIKEDYLRVLRYVRFFLSYSKHSHDPQVIKAI 208 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K G+ +SSER+ E KLL++ L I IF ++ ISL Sbjct: 209 KKNLSGVSSISSERLIDEFQKLLKSNGFLKLTKDKDCLEIINLIFPQIKNISLFNKMNSF 268 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ---KT 307 + E LL +++ + + KF+L ++ + LI N + +T Sbjct: 269 AKKNFLEMDFIFLLSLMIIDGTDNVDYFIY---KFNLSKKDQKRLIFLNKFNLEKNTNQT 325 Query: 308 LSIPEIKKLFYLYGDKVMIAKL--KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 S + K+FY G + ++ L KIF + +N +++++ + P+ P Sbjct: 326 FSEKNLNKIFYFNGREALLDVLYFKIFKSKKVDN-------KLIKMIEIFKKKEMPVMPF 378 Query: 366 TGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ KY IP GK++G L ++ W ++ F++S ++L ++ Sbjct: 379 KASTLMEKYKIPEGKELGQKLKAIEEVWTSNDFKISDKELQKIV 422 >gi|149190136|ref|ZP_01868412.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii AK1] gi|148836025|gb|EDL52986.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii AK1] Length = 449 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 29 ISRKQIS-ENALKVLYRLNGAGYDAYLVGGGVRDLLLGEQPKDFDIATNATPEQIKKLFR 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R +G + Sbjct: 88 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEQEKNVSQQSKEGMLLRDNVYGSID 143 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDF+INA+Y + + DY GG+ DL +R I+ IG+ R ED +R+LR RF Sbjct: 144 EDAERRDFSINAMYYNIGDYSIHDYAGGMEDLEDRLIRLIGEPEVRYREDPVRMLRAIRF 203 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+ D + L+ + S R++ E KLL++ L + +F++ Sbjct: 204 AAKL-DFDIEEDTAAPIEELAPLLRDIPSARLYEESLKLLQSGYGLETYHLLREYNLFQQ 262 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F + ++ S EQV + +D+ Sbjct: 263 LFPIIAPHFTEEYSS--RTEQVLDLVLDA 289 >gi|218284035|ref|ZP_03489872.1| hypothetical protein EUBIFOR_02475 [Eubacterium biforme DSM 3989] gi|218215454|gb|EEC88992.1| hypothetical protein EUBIFOR_02475 [Eubacterium biforme DSM 3989] Length = 438 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 91/444 (20%), Positives = 184/444 (41%), Gaps = 54/444 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ I+ +N ++ +VGG VRD L++ + D DI T+ P+ ++ +F ++ Sbjct: 5 EYILEIIQKINDIGYEAYVVGGCVRDYLLDRPIHDYDICTSAKPEVILNLFDRSVG---- 60 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ +ITT R + D R+ V + + D RRDFT+NA+ Sbjct: 61 TGLKHGTVTVLSNS-PVEITTFRLESEYKDHRHPDSVKYVSTIEEDLSRRDFTVNAMAYH 119 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +ID G DL+ + I+ +G+ R ED LR+LR +RF A G ++D + Sbjct: 120 PNRGLIDPYKGQFDLKAKVIRCVGNPDRRFNEDALRMLRAYRFCAKLG-FSMDETVKKSI 178 Query: 191 IKAKKGLKILSSERIWSEINKLLEA-KNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 ++ +S ERI E+ +++E L ++ + K +F ++ + + Sbjct: 179 DTNATLIQYVSIERIVHELKEIMETNPQVLASMTLL-----LKPVFNELDLALRCSQNSI 233 Query: 250 IEAEQVFEWKIDSL---------LRFIVLISWQDKKSI---------------------- 278 V +D++ L F++L K + Sbjct: 234 YHYTDVLHHTLDAMCYLKPYDETLAFVLLFHDLGKIQVKTTDSNGKDHFKHHAKVGSELS 293 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF--YLYGDKVMIAKLKI--FLA 334 + ++F L E R ++ + + ++ T + I K Y ++ ++ L+I A Sbjct: 294 KELCRRFKLTNEQRKWIPFYVLHHDDKFTCDLDCIYKYRVTYHLDEEHLLNLLQIRYCDA 353 Query: 335 LHYNNLTHQDTCFILQVLSDIIHWK-----KPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 + ++ L + + I + L G D+++ GK++ L C Sbjct: 354 MAHSELGQKSAKDVELFYDYYIQNRNRCMSISQLALNGKDIIEATNLRGKQIQEALNMCL 413 Query: 390 QEWINSSFQLSQEDLHHLLRKLIA 413 + + + DL +RK ++ Sbjct: 414 KYAFYHPEKNHKIDLIEYIRKELS 437 >gi|257063620|ref|YP_003143292.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia heliotrinireducens DSM 20476] gi|256791273|gb|ACV21943.1| tRNA nucleotidyltransferase/poly(A) polymerase [Slackia heliotrinireducens DSM 20476] Length = 467 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 97/465 (20%), Positives = 174/465 (37%), Gaps = 61/465 (13%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H D +I+ L ++ + G VRD LM D+DI+T+ + + +FS Sbjct: 5 HDITIPPDAASIVDALEAAGHEAWVTGSYVRDMLMGRIPHDLDISTSARWETIRDLFSSQ 64 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRY-----------------AKVVF 109 +KV T GT+ + +ITT R++ +G ++ F Sbjct: 65 GFKVYETGTDRGTVTVNTGAHLVEITTFRTEEPIEGTRIAFQNAEHRKLSVWEPSSRFRF 124 Query: 110 TRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 T + D LRRDFT+NAL + ++D GG+ D+ N TI+ +G+ R +D LRILR Sbjct: 125 TNSVEKDLLRRDFTMNALAFNPNCGILDPFGGVKDISNETIRAVGEPSERFWQDPLRILR 184 Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF + G +++S A++ + LK ++RI +E +LL+ + AI M Sbjct: 185 AARFASQLG-FDVESRTKEAALASAPLLKHAPAQRIEAEFARLLQGDHARQAI--MDWID 241 Query: 230 IFKEIFLDVQEISLDQLSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKSILSM 281 + + + V E +LR+ + K + + Sbjct: 242 VIGVFIPEALPMKGLDQRTKYHIYDVLEHTAYTVSLAPQQRVLRYAAFLHDIGKPEVFRI 301 Query: 282 ----------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 + L + + + + ++ + + ++K Sbjct: 302 DEEGVGHSPGHAAAGAVISEQVCSRLKLREDEAAEICTLVGAHDDRISPTPRSVRKALRR 361 Query: 320 YGDKVMIAKLKIFL----ALHYNNLTHQDTC-------FILQVLSDIIHWKKPLFPLTGD 368 G V + + + L AL + + + VL + + G Sbjct: 362 LGGNVRMLRELLELKKADALAHAPEHQERAAIAEEVGLVLDDVLKKEAAFDIKDLAIDGT 421 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 DV+ G+P G VG L I+ +++DL L IA Sbjct: 422 DVIARGVPAGPSVGAALEAALDAVIDELVNNTRDDLLAFLDDRIA 466 >gi|240168387|ref|ZP_04747046.1| poly(a) polymerase PcnA [Mycobacterium kansasii ATCC 12478] Length = 480 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 87/452 (19%), Positives = 174/452 (38%), Gaps = 55/452 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H + L + S + + +VGG+VRD+L+ D+D T P++V ++ V Sbjct: 21 HTAVLRELGSAFAEAGHELYLVGGSVRDALLGRLSPDLDFTTDARPEQVQKLVRSWADAV 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY- 128 T I +GTI + +ITT R+D R+ +V F D +RRDFT+NA+ Sbjct: 81 WDTGIDFGTIGVGKDAYRLEITTFRADSYDQVSRHPEVSFGDRLHDDLVRRDFTVNAMAV 140 Query: 129 ---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 + G+ +D +GGL LR++ + +D LR+LR RF + G + Sbjct: 141 RVTPNGPGEFLDPLGGLASLRDKVLDTPAPPSESFGDDPLRMLRAARFVSQLG-FTVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISL 243 A + L +S+ER+ +E++KLL +P+ I M G+ + + +V +++ Sbjct: 200 VRTAIEEMAPQLGRISAERVGAELDKLLLGDDPVAGIDLMVQSGMGEVVLPEVGGMRMAI 259 Query: 244 DQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------- 277 D+ Q + +A + + + D +LR+ L+ K + Sbjct: 260 DEHHQHKDVYQHSLTVLRQAMALEDEEPDLVLRWAALLHDIGKPATRRHEANGGVSFHHH 319 Query: 278 -------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIA 327 + + +++ + + + Y+ +++ Sbjct: 320 EVVGAKMVRKRMRALKYSKQMIDDVSQLVYLHLRFHGYGDAKWTDSAVRRYVTDAGPLLS 379 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIP 376 +L + + + + + L G+ +++ IP Sbjct: 380 RLHKLVRADCTTRNQRRAARLQVSYDRLEQRIAELAAQEDLARVRPDLDGNQIMRLLDIP 439 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G VG + K+ ++ ++E LL Sbjct: 440 AGPLVGEAWRYLKELRLDRGPLSTEEATAELL 471 >gi|163750934|ref|ZP_02158167.1| polyA polymerase [Shewanella benthica KT99] gi|161329358|gb|EDQ00355.1| polyA polymerase [Shewanella benthica KT99] Length = 448 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 77/299 (25%), Positives = 129/299 (43%), Gaps = 27/299 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I +L L+K K+ +VGG VRD L+ +D D+ T P+ + +F R Sbjct: 2 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGFQPKDFDVVTNATPEEIKGLFRNCRL--- 58 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ TLR + +GR + D+ RRD Sbjct: 59 -IGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNAEGRLLRDNVYGTIDEDAERRD 117 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR RF G Sbjct: 118 FTVNALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVRFATKLG-M 176 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I+ D + LK + + R++ EI KL N M + G+F+ +F V Sbjct: 177 TIEKDTASPISELAPLLKDIPAARMYEEILKLFFNGQAQNNFNMMRDFGLFEPLFPLVNS 236 Query: 241 ISLDQ-----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 + +D+ + + I+A E + + ++ + + +A + L Sbjct: 237 LLVDEPEGPAAKMMQSIMESIDARVKAEKTVTPAFFYAAILWYPLSQRADDIALEGGLS 295 >gi|312944753|gb|ADR25580.1| poly(A) polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 472 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|325854980|ref|ZP_08171696.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella denticola CRIS 18C-A] gi|325483958|gb|EGC86898.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella denticola CRIS 18C-A] Length = 474 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 89/471 (18%), Positives = 181/471 (38%), Gaps = 62/471 (13%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + ++ FH I +K + +VGG VRD + DID+ +V Sbjct: 9 LAQLLDKDIFHH-----ISGAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K ++GT ++ + + R + + VV + D Sbjct: 64 SELKSVLGKKAHLSVFRNFGTAQVKYKDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQN 123 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL ++ G+++D GG++DL N I+ D +D LR++R RF Sbjct: 124 RRDFTINALAVCLNRERFGELVDPFGGVDDLWNGIIRTPLDPDVTFSDDPLRMMRCVRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + ++I+S ERI E+NK++ P V +Y G+ + I Sbjct: 184 TQLNFL-IEDETFEALERNADRIRIVSGERIEEELNKIMMTPTPSKGFVDLYRCGLLQLI 242 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDK-------- 275 ++ + + + + F ++ L LR+ L+ K Sbjct: 243 LPELVALDVVETRNGRAHKNNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKAKCKRWDA 302 Query: 276 --------------KSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----IKK 315 K + ++ ++ LP + + ++ + + ++ E +++ Sbjct: 303 AAGWTFHNHNFVGAKMVPAIFRRLKLPMDSKMKYVQKLVDLHMRPIVIADEEVSDSAVRR 362 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L GD + + + A + + F+ L+ L + + + + Sbjct: 363 LMNDAGDDI-DDLMTLCEADITSKNAVRKKRFLDNFRIVREKLRDLKERDYKRLLQPCID 421 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+++++ + P ++VG + K +++ +E L LLRK A + Sbjct: 422 GNEIMEMFHLRPSREVGTLKQTLKDAVLDNQVPNEREPLLALLRKKAAELE 472 >gi|153005214|ref|YP_001379539.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152028787|gb|ABS26555.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. Fw109-5] Length = 434 Score = 256 bits (655), Expect = 5e-66, Method: Composition-based stats. Identities = 106/415 (25%), Positives = 170/415 (40%), Gaps = 28/415 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++++L L +S +VGGAVRD L++ D D+AT LP++V +F KVIP Sbjct: 16 VLHVLRRLGDAGYRSWLVGGAVRDLLLHRARDANDFDVATPALPEQVAALFP----KVIP 71 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + ++TT R + DGR + V F D +AD RRDFTINAL D Sbjct: 72 TGIEHGTVTVLVGGEPIEVTTFRGEGEYKDGRRPESVTFHEDLEADLARRDFTINALALD 131 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G++ D GG DLR R I+ +GD R ED LR +R RF A G ++D A Sbjct: 132 PLAGELRDPFGGEADLRRRLIRAVGDPVARFGEDGLRPMRAVRFAAQLG-YSLDPATEEA 190 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 A ++ +S ERI E+ +L+ A + A+ M G+ + + +L Sbjct: 191 IRGALPIVRKVSRERIADELTRLVVAPDAPRAVDLMRTTGLLATVLPALAGRPERELDHA 250 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF------ 303 + + L + + + + L R I + + Sbjct: 251 VAVLAATPGEPALRLAAL--LHALPAEDVGRTLLDLRLSRRISDETAALVRAHVCRLDGS 308 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCFILQVLSDIIHWKKP 361 S ++++ G L++ A D + + I ++ Sbjct: 309 RALPASPADVRRWLSAAGPARAPLLLELARAEAAAMGAQVGGDQRAVHALSEAIARIRRE 368 Query: 362 LFPLTGDDV--------VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PLT D+ G PG VG L H + + + + L L Sbjct: 369 RDPLTPQDLALDGRAVMRILGAGPGPHVGEALRHLLERVLAEPRENDEARLTEAL 423 >gi|183600088|ref|ZP_02961581.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827] gi|188022373|gb|EDU60413.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827] Length = 523 Score = 256 bits (655), Expect = 5e-66, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 131/305 (42%), Gaps = 31/305 (10%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + D + + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F Sbjct: 92 TISRSDISD-NALKVLYRLNKNGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQIRKLF 150 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-------------ITDGRYAKVVFT 110 R + I+ + ++ T R +G + Sbjct: 151 RNCRL----VGRRFRLAHIMFGPEVIEVATFRGHHDQIESEDKNRSQQAKNGMLLRDNIF 206 Query: 111 RDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D++RRDFT+N+LY + V DYVGGLNDL+ I+ IGD R ED +R+LR Sbjct: 207 GSIEEDAIRRDFTVNSLYYNIDDFSVRDYVGGLNDLKAGIIRLIGDPETRYREDPVRMLR 266 Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF + I+ + + L+ + S R++ E KLL+A + Sbjct: 267 AVRFACKL-DMRIEPNTAQPIQRLAPLLREIPSARLFEESLKLLQAGQGYATYNMLKEYH 325 Query: 230 IFKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278 +F+++F + E +DQ+ + + + +++ F V++ + + Sbjct: 326 LFEQLFPVISSRFTNNNDSPMEKIIDQVLKNTDFRLKNDKRVNPAFLFAVMLWYPVTEHA 385 Query: 279 LSMAK 283 +++ Sbjct: 386 EKLSQ 390 >gi|313829124|gb|EFS66838.1| tRNA adenylyltransferase [Propionibacterium acnes HL063PA2] gi|315109748|gb|EFT81724.1| tRNA adenylyltransferase [Propionibacterium acnes HL030PA2] Length = 492 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 80/448 (17%), Positives = 154/448 (34%), Gaps = 59/448 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 + + + +VGG+VRD+LM D+D T PD+ + + + Sbjct: 40 RLGQAFQEAGHELHLVGGSVRDALMGTLGHDLDFTTDATPDQTEAVLRTLTHATWDIGRA 99 Query: 77 YGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-K 134 +GTI ++TT R+D D R + + + D +RRDFT+NA+ + + Sbjct: 100 FGTIGARIDDWVVEVTTFRTDAYQPDSRKPVIAYGETLEEDLVRRDFTVNAMALNAATRE 159 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 D GL D+ ++ +D LR++R RF + G D + A Sbjct: 160 FHDPHAGLADIVAGKLRTPFPPERSFSDDPLRMMRAARFTSQLGFTVTD-EVRAAMTDMA 218 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--------- 245 + I+S+ER+ E+++ L +P + + GI + ++ + L++ Sbjct: 219 GRISIISAERVRDELSRTLLTDHPRAGLDLLVTTGIADHVLPELPALRLERDEHHRHKDV 278 Query: 246 -------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------------- 277 L Q I+ E+ + D R L+ K + Sbjct: 279 YEHSLTVLDQSIDLERRRGHEPDLTGRLAALLHDVGKPATRRFEPGGKVSFHHHDVVGAK 338 Query: 278 -ILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKI 331 + K + P +I + + + + +++ GD+ + +L I Sbjct: 339 LVRKRLKALAYPSQIVKDVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERLHI 396 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + D+ L G ++ GI PG + Sbjct: 397 LTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAVRPDLDGQQIMAILGIKPGPE 456 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLL 408 VG ++ E + LL Sbjct: 457 VGKAYKFLLNLRLDEGPHTPDEAKNALL 484 >gi|293418032|ref|ZP_06660654.1| poly(A) polymerase [Escherichia coli B185] gi|291430750|gb|EFF03748.1| poly(A) polymerase [Escherichia coli B185] Length = 472 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 -MHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|213423730|ref|ZP_03356710.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 262 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 19/254 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F Sbjct: 11 ISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRD 112 R + ++ + ++ T R +G + Sbjct: 70 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGS 125 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR Sbjct: 126 IEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAV 185 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A + I + + L + R++ E KLL+A N + +F Sbjct: 186 RFAAKLNMR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLF 244 Query: 232 KEIFLDVQEISLDQ 245 + +F + + Sbjct: 245 QPLFPTITRYFTEN 258 >gi|108759921|ref|YP_631692.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Myxococcus xanthus DK 1622] gi|108463801|gb|ABF88986.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Myxococcus xanthus DK 1622] Length = 422 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 98/422 (23%), Positives = 176/422 (41%), Gaps = 24/422 (5%) Query: 10 FHDSDL----INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 H++D+ +++++ L +VGG VRD + + +D D+AT+ LP V F Sbjct: 5 LHNADIPQPVLDVIARLRDLGHAVYLVGGCVRDMVRLVHPKDFDVATSALPQEVQGAFR- 63 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFT 123 KVIPT I +GT+ ++ + ++TT RS+ DGR V F RD D RRDFT Sbjct: 64 ---KVIPTGIQHGTVTVLQNGTHVEVTTFRSEGDYLDGRRPSSVAFERDIVKDLSRRDFT 120 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INA+ + +++D GG +DLR++ I+ +G A R ED LR LR RF A G + Sbjct: 121 INAMAYNPLDRELVDPFGGQSDLRSQLIRCVGSAQERFSEDGLRPLRAVRFAAVLG-FAL 179 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 DS A + ++ ER+ E+ KLL + + ++ + + G+ ++ Sbjct: 180 DSATRAAIPATLGVFRKVALERVREELVKLLLSPRAESGLLLLADTGLLDVFLPELARAE 239 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQ-DKKSILSMAKKFSLPREIRYFLISFFNC 301 + V A Q +++ +R VL++ D+ + + P ++ + Sbjct: 240 ASAAASVRAAVQASPLEVE--VRVAVLLADLVDRAQARDIGLRLKFPNKVADLVALLVEH 297 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT-CFILQVLSDIIHWKK 360 + + P+ L L + + D + +++ + Sbjct: 298 AKAETRVGEPDAALRRLLARLGPPQLPLWAAVVRARVGVRQPDALPAVEALIARVEALAA 357 Query: 361 PLFPLTGDDV--------VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 PLT D+ G+ P VG + ++ + + L L+ Sbjct: 358 AKPPLTAKDLSLTGGDIMAALGVGPSPIVGEATRFLVESVLDDPSLNTADALRQRLQAWQ 417 Query: 413 AS 414 A Sbjct: 418 AQ 419 >gi|260909396|ref|ZP_05916104.1| tRNA nucleotidyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260636488|gb|EEX54470.1| tRNA nucleotidyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 490 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 87/465 (18%), Positives = 176/465 (37%), Gaps = 66/465 (14%) Query: 8 KWFHDSDLINILS--LLNKGEDKS-------CIVGGAVRDSLMNLSVQDIDIATTILPDR 58 K D+ L +L + +K + + +VGG VRD + + DID+ + Sbjct: 15 KILSDAQLAELLDQDIFHKIGEAADALGVPCYVVGGYVRDLFLERTSNDIDVVVVGSGIQ 74 Query: 59 VMRIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116 V K+ K ++GT ++ R + R + + +V + D Sbjct: 75 VADALRKSLGKKAHISVFRNFGTAQVKFRGYEIEFVGARKESYSHDSRKPIVENGTLEDD 134 Query: 117 SLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRDFTINA+ A + GK+ID G+ DL + I+ D +D LR+LR R Sbjct: 135 QNRRDFTINAMAACLNAENFGKLIDPFDGVYDLEDGIIRTPLDPDITFSDDPLRMLRCVR 194 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F I+ + A + + +KI+S ERI E+NK++ P V ++ G+ + Sbjct: 195 FATQLRFF-IEDETFDALTRNAERIKIISGERIADELNKIMMTPQPSRGFVELHRCGLLQ 253 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKSILS- 280 I ++ + + + F ++ L LR+ L+ K Sbjct: 254 LILPELTRLDNVETRNGRAHKNNFYHTLEVLDNICRYTDNLWLRWAALLHDVGKAKTKRW 313 Query: 281 ---------------------MAKKFSLPREIR-YFLISFFNCNFN-----QKTLSIPEI 313 + ++ LP + + ++ + + + +++ + Sbjct: 314 DPATGWTFHNHNYIGAKMVPDLFRRMKLPLDSKMKYVQKLVDLHMRPIVIAEDSVTDSAV 373 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFP 364 ++L GD + + A + + F+ L L + + + Sbjct: 374 RRLMNDAGDDT-DDLMTLCEADITSKNHIKKQRFLDNFRIVREKLADLKERDYKRLLQPV 432 Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+++++ + P ++VG + K +++ +E L LL Sbjct: 433 IDGNEIMEMFHLGPSREVGTLKQTLKDAVLDNRVPNEREPLMQLL 477 >gi|260592681|ref|ZP_05858139.1| polyA polymerase family protein [Prevotella veroralis F0319] gi|260535451|gb|EEX18068.1| polyA polymerase family protein [Prevotella veroralis F0319] Length = 474 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 83/464 (17%), Positives = 176/464 (37%), Gaps = 62/464 (13%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + ++ FH I + +K + +VGG VRD + DID+ +V Sbjct: 9 LAQLLDKDIFHH-----ISNAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K ++GT ++ + + R + + VV + D Sbjct: 64 SELKAVLGKKAHLSVFRNFGTAQVKYKHTEVEFVGARRESYSHDSRKPVVEDGTLEDDQN 123 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL G+++D G++DL + I+ D +D LR++R RF Sbjct: 124 RRDFTINALAVCLNKARFGELVDPFDGVDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + + +KI+S ERI E+NK++ P + +Y G+ + I Sbjct: 184 TQLNFF-IEDETFEALERNAERIKIISGERIEEELNKIMMTPTPSKGFIDLYRCGLLQII 242 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLIS------------ 271 ++ + + + + F ++ L LR+ L+ Sbjct: 243 LPELVALDVVETRNGRAHKNNFYHTLEVLDNICKHTDNLWLRWAALLHDVGKAMCKRWDA 302 Query: 272 ----------WQDKKSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----IKK 315 + K + + ++ LP + + ++ + + ++ E +++ Sbjct: 303 VAGWTFHNHNYVGAKMVPEIFRRLKLPMDSKMKYVQKQVDLHMRPIVIADEEVTDSAVRR 362 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L G+ + + + A + + F+ L+ L + + + + Sbjct: 363 LLNDAGEDI-DDLMTLCEADITSKNVARKQRFLDNFRSVRKKLKDLKERDYKRLLQPCID 421 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G+++++ + P ++VG + K +++ +E L LLR Sbjct: 422 GNEIMEMFHLKPSREVGILKQTLKDAVLDNKVPNEREPLMELLR 465 >gi|145597083|ref|YP_001161380.1| HDIG domain-containing protein [Salinispora tropica CNB-440] gi|145306420|gb|ABP57002.1| HDIG domain protein [Salinispora tropica CNB-440] Length = 485 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 163/447 (36%), Gaps = 54/447 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ D+D T PD+ +RI + T Sbjct: 32 ADELGRRFASAGHELHLVGGSVRDALLGRLGDDLDFCTDAHPDQTLRIVRGWAEAIWETG 91 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI + +ITT R+++ R V + D RRDFT+NA+ + Sbjct: 92 REFGTIGVQRDGLRLEITTFRAEVYDQVSRNPVVQYGTSLAEDLKRRDFTVNAMAVSLPE 151 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + ID GGL DL + ++ +D LR+LR RF A + D A ++ Sbjct: 152 HRFIDPHGGLADLAAKVVRTPAAPEESFRDDPLRMLRAARFAAQL-RFAVHPDVRAAMVR 210 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +++ERI E KLL +P+ + + + G+ + ++ + L ++ + + Sbjct: 211 MAADLDRITAERIRDEFTKLLCGADPIAGLRLLADTGLAERFLPELTGLKL-EIDEHAQH 269 Query: 253 EQVFEWKI--------------DSLLRFIVLISWQDKKSILSMA---------------- 282 + V+E + D +LR L+ K + ++ Sbjct: 270 KDVYEHTLTVVRNAVTYEEDGCDFILRMAALMHDVGKPATKAVGPDGRVSFHHHEVVGAR 329 Query: 283 ------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 K P+E + + + E L L Sbjct: 330 MTKARMKALRFPKETTTKVTALVALHLRFYGYGRGEWTDSAVRRYVTDAGDVLARLHKLT 389 Query: 337 YNNLTHQDTCFILQVLSDIIHWK-------------KPLFPLTGDDVVK-YGIPPGKKVG 382 ++ T ++ Q+ +D + + L G+ +++ G+PPG VG Sbjct: 390 RSDCTTRNRRKAAQLAADYDALEERIARLAAEEDLARVRPDLDGNAIMELLGVPPGPVVG 449 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLR 409 H K+ + E LLR Sbjct: 450 QAWKHLKEVRLERGPLGRDEAEAELLR 476 >gi|304390464|ref|ZP_07372417.1| tRNA adenylyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326220|gb|EFL93465.1| tRNA adenylyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 509 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 88/439 (20%), Positives = 159/439 (36%), Gaps = 58/439 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + + +VGG VRD+L+ ++ D+D+ T+ PD + V Sbjct: 43 VVPLGEAFAAAGYEIALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVG 102 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +YGT+ F+ITT RSD D R V F + D RRDFT+N++ Sbjct: 103 RNYGTLGARKGDDVFEITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPT 162 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D GGLNDL ++ D +D LRI+R RF A E ++D + + A Sbjct: 163 LELVDPTGGLNDLAAGILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMET 221 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------- 241 ++ L I+S ER+ +E+++L+ A P + M + +++ ++ ++ Sbjct: 222 MRERLTIVSPERVQAELSRLMTAPAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHK 281 Query: 242 -----SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------------ 281 SL L Q I E + D +LR ++ K + Sbjct: 282 DVWEHSLTVLDQAIAQETGPDGPVPAPDLVLRLAAILHDIGKPATRRFEAGGVVTFHQHD 341 Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAK 328 K + + + + Y+ ++ + Sbjct: 342 VVGARITRARLKALKYDKATIRDVSRLVALHQRFHGYGEQVWTDSAVRRYVTDAGPLLER 401 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVK-YGIPP 377 L + + D+ K L L GD++++ GIP Sbjct: 402 LHRLTRADCTTRNVKKAQRLAAAYDDLEARIKELKAQEELDAVRPELNGDEIMEILGIPA 461 Query: 378 GKKVGNILVHCKQEWINSS 396 G +VG + Sbjct: 462 GPEVGKAYKFMLAYRMEHG 480 >gi|268591287|ref|ZP_06125508.1| hypothetical protein PROVRETT_07561 [Providencia rettgeri DSM 1131] gi|291313263|gb|EFE53716.1| polyA polymerase [Providencia rettgeri DSM 1131] Length = 539 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 31/304 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + D + + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F Sbjct: 110 ISRSDISD-NALKVLYRLNKSGFEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFR 168 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-------------ITDGRYAKVVFTR 111 R + I+ + ++ T R +G + Sbjct: 169 NCRL----VGRRFRLAHIMFGPEIIEVATFRGHHDQNVSDDKNLSAQAQNGMLLRDNIFG 224 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRDFT+N+LY + + + DYV GL DL+ I+ IGD R ED +R+LR Sbjct: 225 SIEEDAIRRDFTVNSLYYNIEDFTLRDYVNGLKDLKAGVIRLIGDPETRYREDPVRMLRA 284 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF +I+ + L+ + S R++ E KLL+A + G+ Sbjct: 285 VRFACKLN-MSIEPKTAEPIYQLAHLLREIPSARLFEESLKLLQAGQGYATYKMLKKYGL 343 Query: 231 FKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSIL 279 F+++F V D +E EQV + +++ F V++ + + Sbjct: 344 FEQLFPVVASRFTDNSDSPMEKIIEQVLKNTDFRLKNDKRVNPAFLFAVMLWYPVTEHAE 403 Query: 280 SMAK 283 +++ Sbjct: 404 KLSQ 407 >gi|302870711|ref|YP_003839348.1| tRNA adenylyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315506948|ref|YP_004085835.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Micromonospora sp. L5] gi|302573570|gb|ADL49772.1| tRNA adenylyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315413567|gb|ADU11684.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Micromonospora sp. L5] Length = 486 Score = 255 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 88/447 (19%), Positives = 159/447 (35%), Gaps = 54/447 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+L+ D+D T PD +++ + T Sbjct: 33 ADELGRRFAQAGHELHLVGGSVRDALLGRLGNDLDFCTDAHPDETIKVIRGWAESIWETG 92 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI +ITT R+++ R V + D RRDFT+NA+ Sbjct: 93 REFGTIACQRDGLNLEITTFRAEVYDQVSRNPVVQYGTSLTEDLKRRDFTVNAMAVSLPD 152 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GGL DL + I+ G +D LR+LR RF A + D A + Sbjct: 153 HRFTDPYGGLADLAAKIIRTPGTPQESFRDDPLRMLRAARFAAQL-RFAVHPDVRAAMTE 211 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +++ERI E KLL +P+ + + + G+ + ++ + L + + + Sbjct: 212 MAADLDRITAERIRDEFTKLLCGADPITGLRLLVDTGLAERFLPELTGLKLT-IDEHAQH 270 Query: 253 EQVFEWKI--------------DSLLRFIVLISWQDKKSILSMA---------------- 282 + V+E + D +LR L+ K + ++ Sbjct: 271 KDVYEHTLTVVSNAMSMESDGCDFVLRMAALMHDIGKPATKAVGADGRVSFHHHEVVGAR 330 Query: 283 ------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 K +EI ++ + E L L Sbjct: 331 LTKNRMKALRYSKEITSQVVKLVGLHLRFYGYGRGEWTDSAVRRYVTDAGDLLSRLHKLT 390 Query: 337 YNNLTHQDTCFILQVLSDIIHWK-------------KPLFPLTGDDVVK-YGIPPGKKVG 382 ++ T ++ Q+ +D + + L G+ +++ G+PPG VG Sbjct: 391 RSDCTTRNRRKAAQLAADYDALEERIARIAAEEDLARVRPDLDGNAIMELLGVPPGPVVG 450 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLR 409 + K+ + E LLR Sbjct: 451 RAWQYLKELRLERGPLDRDEAEAELLR 477 >gi|161485780|ref|NP_706091.3| poly(A) polymerase I [Shigella flexneri 2a str. 301] gi|161486546|ref|NP_835874.2| poly(A) polymerase I [Shigella flexneri 2a str. 2457T] gi|281599499|gb|ADA72483.1| poly(A) polymerase I [Shigella flexneri 2002017] Length = 472 Score = 255 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|218710491|ref|YP_002418112.1| poly(A) polymerase [Vibrio splendidus LGP32] gi|218323510|emb|CAV19687.1| Poly(A) polymerase [Vibrio splendidus LGP32] Length = 472 Score = 255 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ +F Sbjct: 50 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFR 108 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R +G + + Sbjct: 109 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSDEGMLLRDNVYGNVD 164 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF Sbjct: 165 EDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRF 224 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+ D + LK + + R++ E KLL++ + L M +F++ Sbjct: 225 AAKL-DFDIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 283 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F V E + EQ+ + +DS Sbjct: 284 MFPSVAEHFTEGYDS--HTEQMLDLVLDS 310 >gi|91209212|ref|YP_539198.1| poly(A) polymerase I [Escherichia coli UTI89] gi|91070786|gb|ABE05667.1| poly(A) polymerase [Escherichia coli UTI89] Length = 472 Score = 255 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 151/374 (40%), Gaps = 34/374 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + L + ++L+IP+ + + + ++ + K L + + Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQAKRAWKLLEHP-KFR 405 Query: 344 DTCFILQVLSDIIH 357 +L + +++ Sbjct: 406 AAYDLLALRAEVER 419 >gi|290476646|ref|YP_003469551.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004] gi|289175984|emb|CBJ82787.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004] Length = 503 Score = 255 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 85/414 (20%), Positives = 163/414 (39%), Gaps = 47/414 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LNK ++ +VGG VRD L++ +D DIAT P++V ++F Sbjct: 76 ISRKDISD-NALKVLYRLNKSGFQAYLVGGGVRDLLLHKKPKDFDIATNATPEQVRKLFR 134 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI-------------TDGRYAKVVFTR 111 R + I+ ++ T R G + Sbjct: 135 NCRL----VGRRFRLAHIMFGPDVIEVATFRGSHEQVESNDRNQSQKAQSGMLLRDNIFG 190 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRDFTIN+LY + + DYVGG+ DL+ I+ IGD R ED +R+LR Sbjct: 191 SVEEDAVRRDFTINSLYYGIEDFALRDYVGGMADLQAGIIRLIGDPETRYREDPVRMLRA 250 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + + I+ + LK + S R++ E KLL++ + + + + Sbjct: 251 VRFASKL-DMTIEKTTAEPIPQLAFLLKDIPSARLFEESLKLLQSGHGYSTYKLLREYNL 309 Query: 231 FKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279 F+ +F +Q E L+Q+ + + + +++ F ++ + + Sbjct: 310 FQLLFPMMQRGFTPNSDSPLEKLLEQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAE 369 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK------------KLFYLYGDKVMIA 327 ++++ LP + L + +++IP+ +L G + Sbjct: 370 KLSQEGGLPYYDAFALAMNDILDEQCGSIAIPKRHTTTMRDIWLLQLRLPRRQGKRANKL 429 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG----DDVVKYGIPP 377 Y+ L + + L +++ W T + + G P Sbjct: 430 MEHPKFRAAYDLLELRASVEPRHELKELVLWWSEFQQATAPQQRGMISELGTDP 483 >gi|116672699|ref|YP_833632.1| metal dependent phosphohydrolase [Arthrobacter sp. FB24] gi|116612808|gb|ABK05532.1| metal dependent phosphohydrolase [Arthrobacter sp. FB24] Length = 496 Score = 255 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 88/462 (19%), Positives = 157/462 (33%), Gaps = 63/462 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D ++ + + +VGG VRD + D+D T PD+ + + K Sbjct: 18 DPVVLELGQRFVDAGYELSLVGGPVRDLFLGRRSPDLDFTTDATPDQTLALIRKWADNFW 77 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++GTI + +ITT R++ + R V F D LRRDFTINA+ Sbjct: 78 EIGKAFGTIGMRKSGFQIEITTYRAEAYDPESRKPMVAFGSSLTDDLLRRDFTINAMALR 137 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ID GG+ DL + G +D LR++R RF A G + D A Sbjct: 138 LPSMELIDPFGGVRDLHASVLATPGAPETSFSDDPLRMMRAARFAAQLG-VAVRGDVKHA 196 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS-- 247 + + + I+S+ER+ E+ KL+ +P I + + G+ + + +V + L+ Sbjct: 197 MSQMAERISIISAERVREELVKLICGAHPRVGIDLLVDTGLAEFVLPEVSALRLEADEHH 256 Query: 248 ----------QVIEAEQVFE-------WKIDSLLRFIVLISWQDKKSILSMA-------- 282 QV+E E D +LRF L+ K + Sbjct: 257 RHKDVYQHSLQVLEQAASLETDSDGAVPGPDFVLRFAALMHDVGKPATRRFEPGGAVSFR 316 Query: 283 --------------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDK 323 K + + + + S +++ Y+ Sbjct: 317 HHDMVGSKLTKKRMKALRFDNDTIKAVARLVELHMRFYGYGEAGWSDSAVRR--YVTDAG 374 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK- 372 ++ +L + + D+ + L G ++ Sbjct: 375 PLLERLHRLTRSDVTTRNQRKADRLSFAYDDLEARIAALREQESLEAVRPDLDGGQIMAL 434 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 G+ PG VG ++ + L LR+ A Sbjct: 435 LGLKPGPVVGKAYKFLLEQRMEHG-PLDPVVAEARLREWWAD 475 >gi|307565902|ref|ZP_07628361.1| HDIG domain protein [Prevotella amnii CRIS 21A-A] gi|307345330|gb|EFN90708.1| HDIG domain protein [Prevotella amnii CRIS 21A-A] Length = 474 Score = 255 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 86/472 (18%), Positives = 178/472 (37%), Gaps = 60/472 (12%) Query: 1 MVSIVQHKWFH--DSDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M + + H + D+ NI +K + +VGG VRD + DID+ Sbjct: 1 MQDLSDAQLAHLLNKDIFHNISKAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 +V K ++GT ++ + + R + + +V + Sbjct: 61 KVAHELKNILGKQAHISIFKNFGTAQVKYKNIEVEFVGARKESYSHDSRKPLVENGTLED 120 Query: 116 DSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINA+ GK+ID GG++DL + I+ D +D LR++R Sbjct: 121 DQNRRDFTINAMAICLNSHLFGKLIDPFGGIDDLWDGIIRTPLDPDVTFSDDPLRMMRCV 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF I+ D A + + +KI+S+ERI E+NK++ K P V + G+ Sbjct: 181 RFATQLNFF-IEDDTFAALERNAERIKIISNERIIEELNKIIMTKTPSKGFVDLQRCGLL 239 Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKS--- 277 + I ++ + + + + F ++ L LR+ L+ K Sbjct: 240 QIIMPELTSMDVVDIKNGRAHKNNFYHTLEVLDNICKKTNNIWLRWAALLHDIGKPKCKR 299 Query: 278 -------------------ILSMAKKFSLPREIRYFLIS------FFNCNFNQKTLSIPE 312 + + ++ LP +++ + K ++ Sbjct: 300 WDNIIGWTFHNHNIVGANMVPKLFRRMKLPMDMKMKYVRKLVDMHMRPIAIADKEVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L G+ + + + A + + F+ ++ L + + + Sbjct: 360 VRRLINDAGNDI-DDLMTLCEADITSKNEVRKQRFLNNFKIVREKIEALKEQDYKRLLQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + G+++++ + + P +VG + K+ +++ +E L LL + Sbjct: 419 CIDGNEIMEIFHLKPSYEVGLLKKSLKEAILDNKVPNEREPLLKLLNETAKE 470 >gi|261406081|ref|YP_003242322.1| polunucleotide adenylyltransferase region [Paenibacillus sp. Y412MC10] gi|261282544|gb|ACX64515.1| Polynucleotide adenylyltransferase region [Paenibacillus sp. Y412MC10] Length = 432 Score = 255 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 170/370 (45%), Gaps = 21/370 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L + ++ VGG VRD M V D+DI T+ LP+ +F KVIPT I Sbjct: 23 DVIRTLLRHGHEAYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFP----KVIPTGIK 78 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + F++TT R + D R+ +V F + K D RRDFT+NA+ G Sbjct: 79 HGTVTVLMEGQSFEVTTYRVESGYEDHRHPTEVAFVGEVKEDLRRRDFTMNAMARGIDGS 138 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GG D+ + I+ +G+A R ED LR++R RF + +G +I + + Sbjct: 139 WVDPFGGREDIDRKVIRCVGEARLRFREDALRMVRCIRFASVFG-FSIALRTWRGILSER 197 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L ++ ERI SE K+L +PL + G+ + + D+ + IEA + Sbjct: 198 DTLGWIAMERIRSEFEKILAGPSPLRGLEMFVRSGLHSRMKAPFPYTTHDR--KTIEAME 255 Query: 255 VFEWKIDSLLRFIVLIS-WQDKKSILSMAKKFSLPREIRY---FLISFFNCNFNQKTLSI 310 E ++ ++L++ + + + ++ + R L+S Q Sbjct: 256 RIEPDHATIRWSLLLLACGTTAQQAEELLRSWTFSNKQRESIVKLLSLHESYLQQPNAGD 315 Query: 311 PEIKKLFYL-----YGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---LSDIIHWKKPL 362 E +L ++ YG + L++ ALH+ + FI Q+ L D+ Sbjct: 316 AESSRLKWISLVLAYGVEAAQGWLEMQTALHHAGASSAPLTFIRQLDVWLQDLRIRSLKD 375 Query: 363 FPLTGDDVVK 372 +TG ++++ Sbjct: 376 LAITGSELLE 385 >gi|86148287|ref|ZP_01066582.1| polyA polymerase [Vibrio sp. MED222] gi|85833912|gb|EAQ52075.1| polyA polymerase [Vibrio sp. MED222] Length = 451 Score = 255 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ +F Sbjct: 29 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFR 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R +G + + Sbjct: 88 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSEEGMLLRDNVYGNVD 143 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF Sbjct: 144 EDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRF 203 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+ D + LK + + R++ E KLL++ + L M +F++ Sbjct: 204 AAKL-DFDIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F V E + EQ+ + +DS Sbjct: 263 MFPSVAEHFTEGYDS--HTEQMLDLVLDS 289 >gi|311740246|ref|ZP_07714077.1| tRNA adenylyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304629|gb|EFQ80701.1| tRNA adenylyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 478 Score = 255 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 163/451 (36%), Gaps = 55/451 (12%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 + +VGG+VRD+L+ D+D T P+ V I + V T I +G Sbjct: 30 VEKFAARGYSLYLVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIDFG 89 Query: 79 TIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQG 133 T+ + + +ITT RSD R +VV+ + D +RRDF NA+ AD Sbjct: 90 TVSAAYKGQQIEITTFRSDSYDGQSRNPEVVYGDTLEGDLVRRDFKANAMAIELLADASF 149 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 K D + GL D+ +R + +D LR+LR RF + E + + A Sbjct: 150 KFHDPLHGLQDIADRVLDTPDKPEISFHDDPLRMLRAARFASQL-EFRVADRVVEAMRDM 208 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-------- 245 ++ ++ ER+ E++KL+ P + I + + GI IF ++ + + Sbjct: 209 AGEIQRITVERVQVELDKLICGTAPWDGIDLLVSTGIADYIFPEIPALRMTADEHAQHKD 268 Query: 246 -----LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------IL 279 L + +A E D +LR+ L+ K Sbjct: 269 VYAHSLKVLSQAMDQEEDGPDLVLRWAALLHDIGKPDTFDNTDGKVSFHHHEVVGAKLAR 328 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKLKIFLALH 336 +K P+ + + + Y+ ++ +L + Sbjct: 329 KRLRKLKYPKATTESIGQLVYLHMRFHGFGENQWTDSAVRRYVTDAGDLLPRLHKLVRAD 388 Query: 337 YNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 + + + + + L G+++++ G+ PG +VG Sbjct: 389 CTTRNAKKARRLQRTYDQLEERIEEIGRKEDLARVRPDLDGNEIMEILGLQPGPEVGQAW 448 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + K+ + L +ED LR+ S Q Sbjct: 449 SYLKELRLEHG-PLEREDAIAKLREWWDSKQ 478 >gi|261345791|ref|ZP_05973435.1| polyA polymerase [Providencia rustigianii DSM 4541] gi|282566280|gb|EFB71815.1| polyA polymerase [Providencia rustigianii DSM 4541] Length = 529 Score = 255 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 67/303 (22%), Positives = 129/303 (42%), Gaps = 30/303 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + D + + +L LNK ++ +VGG VRD L+ L +D DI T P+++ ++F Sbjct: 101 ISRDDISD-NALKVLYRLNKNGYEAYLVGGGVRDLLLGLKPKDFDITTNATPEQIRKLFR 159 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRD 112 R + I+ + ++ T R + G + Sbjct: 160 NCRL----VGRRFRLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNGMLLRDNIFGS 215 Query: 113 WKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D++RRDFT+N+LY + V DYV GL DL++ I+ IGD R ED +R++R Sbjct: 216 IEDDAIRRDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRAV 275 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF + I+ + + L + S R++ E KLL++ + + +F Sbjct: 276 RFACKLNMR-IEPNTAEPIPRLAPLLGEIPSARLFEESLKLLQSGYGYSTYKMLRQYHLF 334 Query: 232 KEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILS 280 +++F + + + +E EQV + +++ F ++ + + Sbjct: 335 EQLFPVIADRFTENNDSPMEKIIEQVLKNTDFRLKNDKRVNPAFLFAAMLWYPVTEHAEK 394 Query: 281 MAK 283 + + Sbjct: 395 LTQ 397 >gi|34763233|ref|ZP_00144196.1| POLY(A) POLYMERASE; TRNA NUCLEOTIDYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887113|gb|EAA24221.1| POLY(A) POLYMERASE; TRNA NUCLEOTIDYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 451 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 104/442 (23%), Positives = 179/442 (40%), Gaps = 55/442 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ Y T Sbjct: 14 IKILNKLNKYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYGTLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D + KV F D + D RRDFTINA+ Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 +Q+ +ID G D+ NR I F+G + RI+ED LR+LR FRF + ++ + + Sbjct: 131 YNQKEGIIDLYNGQKDIENRIINFVGKSEERIIEDPLRVLRAFRFMSRLN-FSLSENTIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K+ LK +S ERI E +KLL KN N + M + G+ + I + + Sbjct: 190 AIKKQKELLKNISEERITMEFSKLLLGKNIKNTLTLMKDTGVLELIIPEFKATYDFNQCN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSI---------------------- 278 +F D LR+ L+ K + Sbjct: 250 PHHNLDLFNHIINVVSKVPADLELRYSALLHDIAKPIVQTFDEEGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFN----------QKTLSIPEIKKLFYLYGDKVMIAK 328 + + +P + ++ + K LS L+ L + Sbjct: 310 RDILTRMKVPVKFIDTVVEIIKKHMILYRDVTDKKFNKLLSEMGYNNLWRLIEHCNADNE 369 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 K + N H+ + + + + + G D+++ G ++G I Sbjct: 370 SKNNEVVSTENDLHE---RLKRAVEKQMQVTVNDLAVNGKDLIELDFT-GTEIGKIKKEL 425 Query: 389 KQEWINSSFQLSQEDLHHLLRK 410 ++++ Q +E++ + +++ Sbjct: 426 LDKYLSEEIQNEKEEMLNYVKE 447 >gi|26246087|ref|NP_752126.1| poly(A) polymerase I [Escherichia coli CFT073] gi|82542743|ref|YP_406690.1| poly(A) polymerase I [Shigella boydii Sb227] gi|110640364|ref|YP_668092.1| poly(A) polymerase I [Escherichia coli 536] gi|161986592|ref|YP_309183.2| poly(A) polymerase I [Shigella sonnei Ss046] gi|162139816|ref|NP_308174.2| poly(A) polymerase I [Escherichia coli O157:H7 str. Sakai] gi|209917334|ref|YP_002291418.1| poly(A) polymerase I [Escherichia coli SE11] gi|218557086|ref|YP_002389999.1| poly(A) polymerase I [Escherichia coli S88] gi|218688020|ref|YP_002396232.1| poly(A) polymerase I [Escherichia coli ED1a] gi|218698564|ref|YP_002406193.1| poly(A) polymerase I [Escherichia coli IAI39] gi|237704302|ref|ZP_04534783.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA] gi|254037561|ref|ZP_04871638.1| poly(A) polymerase I [Escherichia sp. 1_1_43] gi|291280967|ref|YP_003497785.1| Poly(A) polymerase [Escherichia coli O55:H7 str. CB9615] gi|306815256|ref|ZP_07449405.1| poly(A) polymerase I [Escherichia coli NC101] gi|26106484|gb|AAN78670.1|AE016755_170 Poly(A) polymerase [Escherichia coli CFT073] gi|81244154|gb|ABB64862.1| poly(A) polymerase I [Shigella boydii Sb227] gi|110341956|gb|ABG68193.1| poly(A) polymerase [Escherichia coli 536] gi|209910593|dbj|BAG75667.1| poly(A) polymerase [Escherichia coli SE11] gi|218363855|emb|CAR01518.1| poly(A) polymerase I [Escherichia coli S88] gi|218368550|emb|CAR16287.1| poly(A) polymerase I [Escherichia coli IAI39] gi|218425584|emb|CAR06370.1| poly(A) polymerase I [Escherichia coli ED1a] gi|226840667|gb|EEH72669.1| poly(A) polymerase I [Escherichia sp. 1_1_43] gi|226902214|gb|EEH88473.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA] gi|290760840|gb|ADD54801.1| Poly(A) polymerase [Escherichia coli O55:H7 str. CB9615] gi|305850918|gb|EFM51373.1| poly(A) polymerase I [Escherichia coli NC101] gi|307551996|gb|ADN44771.1| poly(A) polymerase [Escherichia coli ABU 83972] gi|309700352|emb|CBI99640.1| poly(A) polymerase [Escherichia coli ETEC H10407] Length = 472 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|119964423|ref|YP_949860.1| RNA nucleotidyltransferase [Arthrobacter aurescens TC1] gi|119951282|gb|ABM10193.1| putative RNA nucleotidyltransferase [Arthrobacter aurescens TC1] Length = 488 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 160/456 (35%), Gaps = 63/456 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D ++++ + +VGG VRD + + D+D T PD+ + + K Sbjct: 15 DPVVLDLGQRFVDAGFELSLVGGPVRDLFLGRTSPDLDFTTDATPDQTISVIKKWADNFW 74 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++GTI + +ITT R++ D R V F D LRRDFTINA+ Sbjct: 75 EIGRAFGTIGMKKSGFQIEITTYRAEAYDPDSRKPVVAFGSSLTDDLLRRDFTINAMALR 134 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++D GG+ DL + G +D LR++R RF + G ++ D +A Sbjct: 135 LPSLELVDPFGGVRDLHASELATPGAPEASFSDDPLRMMRAARFASQLG-VSVHDDVRLA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS-- 247 + +KI+S+ER+ E+ KL+ +P I + + G+ + + +V + L+ Sbjct: 194 MSQMADRIKIISAERVREELVKLINGTHPRVGIDLLVDTGLAEFVLPEVSALRLEADEHH 253 Query: 248 ----------QVIEAEQVFE-------WKIDSLLRFIVLISWQDKKSILSMA-------- 282 QV+E E D +LRF L+ K + Sbjct: 254 RHKDVYQHSLQVLEQAAALETGPDGPVPGPDFVLRFAALMHDVGKPATRRFEPGGAVSFR 313 Query: 283 --------------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDK 323 K + + + S +++ Y+ Sbjct: 314 HHDVVGAKLTAKRMKALRFDNDSIKAVSRLVELHMRFYGYGDAGWSDSAVRR--YVTDAG 371 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK- 372 ++ +L + + D+ L G +++ Sbjct: 372 PLLERLHRLTRSDVTTRNQRKADRLSFAYDDLEQRISALMEQESLAAVRPDLDGAQIMRL 431 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ PG VG +E + LS E+ L Sbjct: 432 LGLKPGPVVGRAYKFLLEERMEHG-PLSPEEAEQKL 466 >gi|84394000|ref|ZP_00992739.1| polyA polymerase [Vibrio splendidus 12B01] gi|84375394|gb|EAP92302.1| polyA polymerase [Vibrio splendidus 12B01] Length = 451 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ +F Sbjct: 29 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFR 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R +G + + Sbjct: 88 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSDEGMLLRDNVYGNVD 143 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF Sbjct: 144 EDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRF 203 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+ D + LK + + R++ E KLL++ + L M +F++ Sbjct: 204 AAKL-DFDIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F + E + EQ+ + +DS Sbjct: 263 MFPAIAEHFTEGYDS--HTEQMLDLVLDS 289 >gi|295837774|ref|ZP_06824707.1| tRNA adenylyltransferase [Streptomyces sp. SPB74] gi|295826667|gb|EDY45863.2| tRNA adenylyltransferase [Streptomyces sp. SPB74] Length = 489 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 87/461 (18%), Positives = 171/461 (37%), Gaps = 71/461 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ +VGG+VRD+L+ D+D T P+ V+ + V Sbjct: 30 ADELARRFHEAGFTLALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVWEVG 89 Query: 75 ISYGTIK----IICRKKY----FDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 I++GT+ ++ ++TT RS+ R KV + + D +RRDFT+N Sbjct: 90 IAFGTVGCQKAARVGEEEQSFQIEVTTYRSEAYDRTSRKPKVSYGDSIEEDLVRRDFTVN 149 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + +D GGL+DL + ++ G +D LR+LR RF A + + + Sbjct: 150 AMAVFLPEKRFVDPHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAA 208 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D + A + + I+S+ER+ +E+NKLL + +P+ + + + G+ +++ ++ + L+ Sbjct: 209 DVVAAMTAMAERIGIVSAERVQAELNKLLLSAHPVKGLRLLVDTGLAEQVLPELPALRLE 268 Query: 245 -------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM---------- 281 L+ + +A + E D LR L+ K Sbjct: 269 SDEHHRHKDVYEHSLTVLEQAIDLEEDGPDLTLRIAALLHDIGKPKTRRFEGDGRVSFHH 328 Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKV 324 E+ + + + +++ G ++ Sbjct: 329 HEIVGAKIAKKRLAALKYSNEMIRDVCRLIELHLRFHGYGAGEWTDSAVRRYVRDAGPQL 388 Query: 325 MI-------------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + LA Y+ L + Q D I L G++++ Sbjct: 389 SRLHKLTRSDCTTRNKRKANALARAYDGLEQRIEELQEQEELDAIR-----PDLDGNEIM 443 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 GI PG +G + L ++ LR+ Sbjct: 444 ALLGITPGPAIGRAYAFLLDLRMEKG-PLGKDAAGEALREW 483 >gi|271501655|ref|YP_003334681.1| poly(A) polymerase [Dickeya dadantii Ech586] gi|270345210|gb|ACZ77975.1| poly(A) polymerase [Dickeya dadantii Ech586] Length = 467 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 77/400 (19%), Positives = 141/400 (35%), Gaps = 52/400 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+K ++ +VGG VRD L+ +D DI T P++V ++F R Sbjct: 45 SENALKVLYRLSKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117 + ++ + ++ T R G + + D+ Sbjct: 102 -VGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQETKNAAQQGHNGMLLRDNIFGTIEEDA 160 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTIN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A Sbjct: 161 QRRDFTINSLYYSIADFTVRDYTNGLNDLRQGLIRLIGDPETRYREDPVRMLRAVRFAAK 220 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G + I ++ + L + R++ E KLL+A + + +F+ +F Sbjct: 221 LGMR-ISAETAEPIPRLASLLHDIPPARLFEESLKLLQAGHGYPTYQLLCEYQLFQPLFP 279 Query: 237 DV------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + + + + L + Q + +++ F ++ + + + ++ Sbjct: 280 LISRYFTANGESTMERMIVQVLKNTDQRIQN-DMRVNPAFLFSAMLWYPLVEHAQKLTQE 338 Query: 285 FSL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L I + S + + K + + Sbjct: 339 SGLAYFEAFALAMNDVLDEQCRSLAIPKRITSLVRDIWQLQLRLSRRQGKRAFKLMEHPK 398 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 L L HQ+ + Q + P + Sbjct: 399 FRAAYDLLCLRAEIENHQELQRLAQWWGEFQVAAPPRQQV 438 >gi|256398126|ref|YP_003119690.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Catenulispora acidiphila DSM 44928] gi|256364352|gb|ACU77849.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Catenulispora acidiphila DSM 44928] Length = 491 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 89/452 (19%), Positives = 164/452 (36%), Gaps = 59/452 (13%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +VGG VRD+L+ +D+D T P++V+++ V I++GT+ Sbjct: 37 RFAAAGHSLALVGGPVRDALLGRLSEDLDFTTDARPEQVLKLMQGWAEAVWDVGIAFGTV 96 Query: 81 KIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-----QQGK 134 +ITT RS+ + R +V + + D RRDFT+NA+ + + Sbjct: 97 GAQKAGAKLEITTFRSEAYDRESRKPEVAYGDSIEDDLFRRDFTVNAMAVRLSADPEDFE 156 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GGL DL ++ G +D LR++R RF A G ++ + A + Sbjct: 157 FVDPYGGLADLGAGVLRTPGTPEMSFSDDPLRMMRAARFAAQLG-FDVAPEVRTAMTEMA 215 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + L I+S+ER+ E++KLL A NP + + + G+ + ++ ++ L ++ + + Sbjct: 216 ERLTIVSAERVQVELSKLLLAPNPRAGLALLVDTGLADIVVPELPKLRL-EIDEHHRHKD 274 Query: 255 VFEWK--------------IDSLLRFIVLISWQDKKSILSM------------------- 281 V+E D +LR L+ K Sbjct: 275 VYEHTLTVLEQAIDLETDGPDLILRLAALLHDIGKPKTRRFEPGGGVSFHHHEVVGAHMT 334 Query: 282 ---AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKLKIFLAL 335 +K +EI + E Y+ ++ +L Sbjct: 335 ASRLRKLKYSKEIIDDTSRLVELHLRFHGYGEAEWTDSAVRRYVRDAGPLLERLHKLTRS 394 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVK-YGIPPGKKVGNI 384 + + D+ L L G+++++ I PG +VG Sbjct: 395 DCTTRNRRRALMLEHAYDDLERRIAELREREELDSIRPDLDGNEIMQILAIKPGPEVGAA 454 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 H + ++ L E LR A + Sbjct: 455 YKHLLELRMDRG-PLDHETAETELRSWWAERE 485 >gi|325280081|ref|YP_004252623.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Odoribacter splanchnicus DSM 20712] gi|324311890|gb|ADY32443.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Odoribacter splanchnicus DSM 20712] Length = 467 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 86/455 (18%), Positives = 177/455 (38%), Gaps = 57/455 (12%) Query: 15 LINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-IP 72 + ILS + + ++ ++GG VRD L+ QDIDI + ++ + + Sbjct: 9 IFKILSGIAAEKGIEAYVIGGYVRDLLLQRPSQDIDIVVHGSGIELAETAARRLGNLRVS 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 ++GT + + R + +V D RRDFTINAL Sbjct: 69 VFKNFGTAMFRYKGMEIEFVGARKESYRANSRKPIVEEGTIDDDQKRRDFTINALAISLN 128 Query: 133 ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G +ID GGL L R IK + +D LR++R RF + + I+ + Sbjct: 129 QENYGVLIDPFGGLQHLEERLIKTPLEPGLTFSDDPLRMMRAIRFASQLNFQ-IEENTFQ 187 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLS 247 A + + L I+S ERI E NK++ + P I + G+ + F ++ + +D++ Sbjct: 188 AIAEYRHRLPIVSMERIMDEFNKIMLSPEPSRGIRLLDEAGLLEIFFPELTALKGVDRVQ 247 Query: 248 QVIEAEQVFE----------WKIDSLLRFIVLISWQDKKSIL------------------ 279 V + + + D LR+ L+ K + Sbjct: 248 GVKHKDNFYHTLTVLDTLSLYSQDLWLRWAALLHDIGKPATKKYIQGQGWTFYGHNHVGE 307 Query: 280 ----SMAKKFSLPREIR-YFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 + + LP+ + ++ N + ++T++ +++L + GD + + Sbjct: 308 RLVGKIFNRLKLPQNEKMKYVQKLVNLHMRPIVLSEETVTDSAVRRLLFDAGDDI-DDLM 366 Query: 330 KIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGK 379 + A + + F+ L+ + + + P++G++++ + +PP K Sbjct: 367 TLAEADITSKNEEKVKRFLENFKTVRRKLKEVEEKDSIRNFQPPISGEEIIATFHLPPCK 426 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +G+I K+ ++ + E+ + K+ Sbjct: 427 TIGDIKNAIKEAILDGIIGNNYEEAREYMFKVAKE 461 >gi|311280885|ref|YP_003943116.1| poly(A) polymerase [Enterobacter cloacae SCF1] gi|308750080|gb|ADO49832.1| poly(A) polymerase [Enterobacter cloacae SCF1] Length = 473 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 86/410 (20%), Positives = 160/410 (39%), Gaps = 46/410 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F Sbjct: 47 ISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFR 105 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR-------SDLITDGR-----YAKVVFTRD 112 R + ++ + ++ T R SD +T R + Sbjct: 106 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEGSASDRVTSQRGQNGMLLRDNIFGS 161 Query: 113 WKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR Sbjct: 162 IEEDAQRRDFTINSLYYSVADFTVRDYVGGMRDLQEGVIRLIGNPETRYREDPVRMLRAV 221 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A G +I ++ + + + R++ E KLL+A + +F Sbjct: 222 RFAAKLG-MSISAETAEPIPRLATLINDVPPARLFEESLKLLQAGYGYETYRLLREYSLF 280 Query: 232 KEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILS 280 + +F + + +E QV E +++ F + + + Sbjct: 281 QPLFPTITRYFTENGDSPMERIISQVLKNTDNRIHNEMRVNPAFLFAAMFWYPLLEMAQK 340 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALH 336 +A++ L + L + +TL+IP+ + + + ++ + K L Sbjct: 341 IAQESGLAYYDAFALAMNDVLDEACRTLAIPKRITTLVRDIWQLQLRMSRRQGKRAWKLM 400 Query: 337 --------YNNLTHQDTCFILQVLSDIIHW----KKPLFPLTGDDVVKYG 374 Y+ L + L ++ W + P D + G Sbjct: 401 EHPKFRASYDLLALRAESESNSELQRLVQWWGEFQVAAPPAQKDMLDDLG 450 >gi|327313325|ref|YP_004328762.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella denticola F0289] gi|326945762|gb|AEA21647.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella denticola F0289] Length = 474 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 88/471 (18%), Positives = 181/471 (38%), Gaps = 62/471 (13%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + ++ FH I +K + +VGG VRD + DID+ +V Sbjct: 9 LAQLLDKDIFHH-----ISGAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K ++GT ++ + + R + + VV + D Sbjct: 64 SELKSVLGKKAHLSVFRNFGTAQVKYKDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQN 123 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL ++ G+++D GG++DL + I+ D +D LR++R RF Sbjct: 124 RRDFTINALAVCLNRERFGELVDPFGGVDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + ++I+S ERI E+NK++ P V +Y G+ + I Sbjct: 184 TQLNFL-IEDETFEALERNADRIRIVSGERIEEELNKIMMTPTPSKGFVDLYRCGLLQLI 242 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDK-------- 275 ++ + + + + F ++ L LR+ L+ K Sbjct: 243 LPELVALDVVETRNGRAHKNNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKAKCKRWDA 302 Query: 276 --------------KSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----IKK 315 K + ++ ++ LP + + ++ + + ++ E +++ Sbjct: 303 AAGWTFHNHNFVGAKMVPAIFRRLKLPMDSKMKYVQKLVDLHMRPIVIADEEVSDSAVRR 362 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L GD + + + A + + F+ L+ L + + + + Sbjct: 363 LMNDAGDDI-DDLMTLCEADITSKNAVRKKRFLDNFRIVREKLRDLKERDYKRLLQPCID 421 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+++++ + P ++VG + K +++ +E L LLRK A + Sbjct: 422 GNEIMEMFHLRPSREVGTLKQTLKDAVLDNQVPNEREPLLALLRKKAAELE 472 >gi|329957804|ref|ZP_08298279.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacteroides clarus YIT 12056] gi|328522681|gb|EGF49790.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Bacteroides clarus YIT 12056] Length = 479 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 85/456 (18%), Positives = 173/456 (37%), Gaps = 57/456 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + F D+ I ++ + +VGG VRD + +DID+ + +K Sbjct: 16 QRFSDNIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALAKRL 75 Query: 68 YKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT ++ + R + T +V + D RRDFTIN Sbjct: 76 GRGAHLSVFKNFGTAQLKYHGTEVEFVGARKESYTHDSRKPIVEDGSLEDDQNRRDFTIN 135 Query: 126 ALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL ++ G++ D GG+ D+R +TI+ D +D LR++R RF Sbjct: 136 ALAVCLNRERYGELADPFGGMADMREKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY- 194 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID D + + K+ + I+S ERI E+NK+L + P + + G+ + IF ++ + Sbjct: 195 IDDDTFESLCRNKERISIISRERIADELNKILLSPVPSKGFIDLDRSGLLQLIFPELVAL 254 Query: 242 SLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKSILS---------- 280 + + F ++ L LR+ L+ K + Sbjct: 255 QGVETRNGRAHKDNFYHTLEVLDNISKKTGNLWLRWAALLHDIAKPATKRWEPRAGWTFH 314 Query: 281 ------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + ++ LP E ++ + ++ +++L + GD Sbjct: 315 NHNFIGEKMIPDIFRRMKLPMNEKMKYVQKLVGLHMRPIVIADDVVTDSAVRRLLFEAGD 374 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G++++K Sbjct: 375 DI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKT 433 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + +PP ++VG + K ++ E + Sbjct: 434 FNLPPCRQVGALKSAIKDAILDGIIPNEYEAARAFM 469 >gi|253774829|ref|YP_003037660.1| poly(A) polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253325873|gb|ACT30475.1| poly(A) polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 472 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|91762765|ref|ZP_01264730.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1002] gi|91718567|gb|EAS85217.1| Poly(A) Polymerase (PAP) [Candidatus Pelagibacter ubique HTCC1002] Length = 424 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 120/404 (29%), Positives = 198/404 (49%), Gaps = 20/404 (4%) Query: 14 DLINILSLLNKG--EDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKTRYKV 70 ++ I ++ + VGG VR ++N DID+A + P V +K K Sbjct: 30 EVSKIFEAIHSYSSNSEIRYVGGCVR-KIINKEAYDDIDLAVNLNPKEVCEALTKKDIKY 88 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + I +GTI + F+IT+LR D+ TDGR+AKV F+ WK D+ RRDFTIN++YAD Sbjct: 89 YASGIEHGTITALINDIKFEITSLRKDIDTDGRHAKVEFSDSWKEDASRRDFTINSIYAD 148 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +G + D G DL + I FIG+ RI EDYLR+LR+ RFF Y + + D + A Sbjct: 149 IEGSLFDPFDGKKDLESGKINFIGNVETRIKEDYLRVLRYVRFFLSYSKHSHDPQVIKAI 208 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K G+ +SSER+ E KLL++ L I IF ++ ISL Sbjct: 209 KKNLSGVSSISSERLIDEFQKLLKSNGFLKLTKDKDCLEIINLIFPQIKNISLFNKMNSF 268 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ---KT 307 + E LL +++ + + KF+L ++ + LI N + +T Sbjct: 269 AKKNFLEMDFIFLLSLMIIDGTDNVDYFIY---KFNLSKKDQKRLIFLNKFNLEKNTNQT 325 Query: 308 LSIPEIKKLFYLYGDKVMIAKL--KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 S + K+FY G + ++ L KIF + +N +++++ + P+ P Sbjct: 326 FSEKNLNKIFYFNGREALLDVLYFKIFKSKKVDN-------KLIKMIEIFKKKEMPVMPF 378 Query: 366 TGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ KY IP G+++G L ++ W ++ F++S ++L ++ Sbjct: 379 KASTLMEKYQIPEGRELGQKLKAIEEVWTSNDFKISDKELQKIV 422 >gi|222031976|emb|CAP74714.1| Poly(A) polymerase [Escherichia coli LF82] Length = 454 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|218552724|ref|YP_002385637.1| poly(A) polymerase I [Escherichia coli IAI1] gi|218693609|ref|YP_002401276.1| poly(A) polymerase I [Escherichia coli 55989] gi|256020021|ref|ZP_05433886.1| poly(A) polymerase I [Shigella sp. D9] gi|293476802|ref|ZP_06665210.1| poly(A) polymerase [Escherichia coli B088] gi|332281167|ref|ZP_08393580.1| poly(A) polymerase I [Shigella sp. D9] gi|218350341|emb|CAU96024.1| poly(A) polymerase I [Escherichia coli 55989] gi|218359492|emb|CAQ97030.1| poly(A) polymerase I [Escherichia coli IAI1] gi|291321255|gb|EFE60697.1| poly(A) polymerase [Escherichia coli B088] gi|332103519|gb|EGJ06865.1| poly(A) polymerase I [Shigella sp. D9] Length = 472 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|161504691|ref|YP_001571803.1| poly(A) polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866038|gb|ABX22661.1| hypothetical protein SARI_02813 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 472 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 108/254 (42%), Gaps = 18/254 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I S+ + L + R++ E KLL+A N + +F+ +F + Sbjct: 228 MR-ISSETAEPIPRLAALLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA 252 + +E Sbjct: 287 TRYFTENGDSAMER 300 >gi|302345230|ref|YP_003813583.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella melaninogenica ATCC 25845] gi|302148944|gb|ADK95206.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Prevotella melaninogenica ATCC 25845] Length = 474 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 85/465 (18%), Positives = 176/465 (37%), Gaps = 62/465 (13%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + ++ FH I + +K + +VGG VRD + DID+ +V Sbjct: 9 LAQLINKDIFHH-----ISTAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K ++GT ++ + + R + + +V + D Sbjct: 64 SELKVILGKKAHLSVFRNFGTAQVKYKNIEVEFVGARKESYSHDSRKPIVEDGTLEDDQN 123 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINA+ G+++D GG++DL + I+ D +D LR++R RF Sbjct: 124 RRDFTINAMAVCLNKARFGELVDPFGGIDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + + +KI+S ERI E+NK++ P + +Y G+ + I Sbjct: 184 TQLNFF-IEDETFEALERNAERIKIISGERIEEELNKIMMTATPSKGFIELYRCGLLQLI 242 Query: 235 FLDVQEISL----------DQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS--- 280 ++ + + + +E D+L LR+ L+ K Sbjct: 243 LPELVALDVVDTRNGRAHKNNFYHTLEVLDNICKHTDNLWLRWSALLHDVGKAKCKRWDA 302 Query: 281 -------------------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----IKK 315 + ++ LP + + ++ + + ++ E +++ Sbjct: 303 TVGWTFHNHNFVGAKMVPTIFRRLKLPMDSKMKYVQKQVDLHMRPIAIADEEVTDSAVRR 362 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L GD + + + A + + F+ L+ L D + + + Sbjct: 363 LMNDAGDDI-DDLMTLCEADITSKNAVRKQRFLDNFRIVREKLKDLKDRDYKRLLQPCVD 421 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G+++++ + P ++VG + K +++ +E L LLR+ Sbjct: 422 GNEIMEMFNLKPSREVGVLKQTLKDAVLDNRVPNEREPLLALLRE 466 >gi|325299813|ref|YP_004259730.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides salanitronis DSM 18170] gi|324319366|gb|ADY37257.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides salanitronis DSM 18170] Length = 473 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 82/441 (18%), Positives = 169/441 (38%), Gaps = 57/441 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT--SI 75 I ++ + +VGG VRD +N +DID+ + K Sbjct: 15 ISQTADELGLECYVVGGYVRDIFLNRPSKDIDVVVVGSGIQTAEALGKRLGPKAHVSVFH 74 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131 ++GT ++ + R + + VV + D RRDFTINAL + Sbjct: 75 NFGTAQVKFFDTEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRDFTINALAVCMNKAR 134 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G++ID GGL+DL+ I+ D +D LR+LR RF I+ + A Sbjct: 135 FGELIDPFGGLDDLKQGIIRTPLDPDITFSDDPLRMLRCIRFATQLNFY-IEDETFNALE 193 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + ++ +KI+S ERI E+NK+L + P V + G+ + IF ++ + ++ Sbjct: 194 RNRERIKIISYERIKDELNKILLSPIPSKGFVDLDRCGLLELIFPELTALQGVEVRNGRG 253 Query: 252 AEQVFEWKIDS-----------LLRFIVLIS----------------------WQDKKSI 278 + F ++ LR+ L+ + +K + Sbjct: 254 HKDNFYHTLEVVDNIAKVSDNLWLRWATLLHDIGKPRTKRWDPRLGWTFHNHNYIGEKMV 313 Query: 279 LSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIF 332 + ++ LP E ++ + ++ E +++L + GD + + + Sbjct: 314 PEIFRRMKLPMNEKMKYVQKLVGLHMRPIVIADDEVTDSAVRRLLFEAGDDI-DDLMALC 372 Query: 333 LALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + F+ L+ L + + P+ G ++++ + + P +++G Sbjct: 373 EADITSKNEARKQRFLDNFKLVRQKLKDLEEKDRIRNFQPPVDGKEIMQVFNLHPCREIG 432 Query: 383 NILVHCKQEWINSSFQLSQED 403 ++ K ++ + + Sbjct: 433 DLKSAIKDAILDGAIPNEHDA 453 >gi|320084436|emb|CBY94229.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 472 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSENDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 287 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 AYYDAFALAMNDVLDEACRSLAIPK 371 >gi|284919920|emb|CBG32975.1| poly(A) polymerase [Escherichia coli 042] Length = 465 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 45 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 220 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 221 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 279 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 280 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 339 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 340 TYHDAFALAMNDVLDEACRSLAIPK 364 >gi|89107024|ref|AP_000804.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. W3110] gi|162135892|ref|NP_414685.4| poly(A) polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|170079780|ref|YP_001729100.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|238899542|ref|YP_002925338.1| poly(A) polymerase I [Escherichia coli BW2952] gi|254791278|ref|YP_003076115.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359] gi|115311610|sp|P0ABF3|PCNB_ECO57 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein gi|115311611|sp|P0ABF2|PCNB_ECOL6 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein gi|115311612|sp|P0ABF1|PCNB_ECOLI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein gi|85674351|dbj|BAB96720.2| poly(A) polymerase I [Escherichia coli str. K12 substr. W3110] gi|87081691|gb|AAC73254.2| poly(A) polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|169887615|gb|ACB01322.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|238862072|gb|ACR64070.1| poly(A) polymerase I [Escherichia coli BW2952] gi|254590678|gb|ACT70039.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359] gi|323380078|gb|ADX52346.1| poly(A) polymerase [Escherichia coli KO11] Length = 465 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 45 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 220 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 221 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 279 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 280 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 339 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 340 TYHDAFALAMNDVLDEACRSLAIPK 364 >gi|325965282|ref|YP_004243188.1| tRNA adenylyltransferase [Arthrobacter phenanthrenivorans Sphe3] gi|323471369|gb|ADX75054.1| tRNA adenylyltransferase [Arthrobacter phenanthrenivorans Sphe3] Length = 501 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 86/464 (18%), Positives = 157/464 (33%), Gaps = 62/464 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D ++ + + +VGG VRD + + D+D T PD+ + + K Sbjct: 18 DPVVLELGQRFVDAGHELSLVGGPVRDLFLGRTSPDLDFTTDATPDQTVALIKKWADNYW 77 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++GTI + ++TT R++ D R V F D LRRDFTINA+ Sbjct: 78 EIGRAFGTIGMRKAGFQIEVTTYRAEAYDPDSRKPVVAFGSSLTDDLLRRDFTINAMALK 137 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++D GG+ DL + G +D LR++R RF A G ++ D A Sbjct: 138 LPSLELVDPFGGVRDLHASVLATPGAPELSFSDDPLRMMRAARFAAQLG-VSVHPDVHKA 196 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245 + + I+S+ER+ E+ KL+ P + + + G+ + + +V + L+ Sbjct: 197 MTDMAERITIISAERVRDELVKLICGAQPRAGVDLLVDTGLAEFVLPEVSALRLESDEHH 256 Query: 246 ------------LSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMA-------- 282 L Q + E E D +LRF L+ K + Sbjct: 257 RHKDVYQHSLQVLEQAAQLETDAEGPVPGPDFVLRFAALMHDVGKPATRRFEPGGAVSFR 316 Query: 283 --------------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDK 323 K + + + + S +++ Y+ Sbjct: 317 HHDMVGAKLTSKRMKALRFDNDTTKAVARLVELHMRFYGYGEAGWSDSAVRR--YVTDAG 374 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK- 372 ++ +L + + D+ L G ++ Sbjct: 375 PLLERLHRLTRSDVTTRNQRKAERLAFAYDDLEARIAALREQESLDAVRPDLDGARIMAL 434 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + PG VG E + + ++E LLR + Sbjct: 435 LDLKPGPVVGRAYKFLLNERMENGPLPAEEAEARLLRWWAEQPE 478 >gi|255324026|ref|ZP_05365151.1| tRNA adenylyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298883|gb|EET78175.1| tRNA adenylyltransferase [Corynebacterium tuberculostearicum SK141] Length = 478 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 164/451 (36%), Gaps = 55/451 (12%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 + +VGG+VRD+L+ D+D T P+ V I + V T I +G Sbjct: 30 VEKFAARGYSLYLVGGSVRDALLGRLGNDLDFTTPARPEVVKEILDEWAETVWDTGIDFG 89 Query: 79 TIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQG 133 T+ + + +ITT RSD R +VV+ + D +RRDF NA+ AD Sbjct: 90 TVSAAYKGQQIEITTFRSDSYDGQSRNPEVVYGDTLEGDLVRRDFKANAMAIELLADASF 149 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 K D + GL+D+ +R + +D LR+LR RF + E + + A Sbjct: 150 KFHDPLHGLHDIADRVLDTPDKPEISFHDDPLRMLRAARFASQL-EFRVADRVVEAMRDM 208 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-------- 245 ++ ++ ER+ E++KL+ P + I + + GI IF ++ + + Sbjct: 209 AGEIQRITVERVQVELDKLICGTAPWDGIDLLVSTGIADYIFPEIPALRMTADEHAQHKD 268 Query: 246 -----LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------IL 279 L + +A E D +LR+ L+ K Sbjct: 269 VYAHSLKVLSQAMDQEEDGPDLVLRWAALLHDIGKPDTFDNTDGKVSFHHHEVVGAKLAR 328 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKLKIFLALH 336 +K P+ + + + Y+ ++ +L + Sbjct: 329 KRLRKLKYPKATTESIGQLVYLHMRFHGFGENQWTDSAVRRYVTDAGDLLPRLHKLVRAD 388 Query: 337 YNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 + + + + + L G+++++ G+ PG +VG Sbjct: 389 CTTRNAKKARRLQRTYDQLEERIEEIGRKEDLARVRPDLDGNEIMEILGLQPGPEVGQAW 448 Query: 386 VHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + K+ + L +ED LR+ S Q Sbjct: 449 SYLKELRLEHG-PLEREDAIAKLREWWDSKQ 478 >gi|298528178|ref|ZP_07015582.1| Polynucleotide adenylyltransferase region [Desulfonatronospira thiodismutans ASO3-1] gi|298511830|gb|EFI35732.1| Polynucleotide adenylyltransferase region [Desulfonatronospira thiodismutans ASO3-1] Length = 898 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 99/426 (23%), Positives = 173/426 (40%), Gaps = 36/426 (8%) Query: 17 NILSLLNKGEDKS-------CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 I SLL ++ VGG VRD L+ S D+D+ + R ++ Sbjct: 469 EIYSLLKSAGHQARDMGYQVYCVGGFVRDILLGRSNLDVDLVVEGDGIKFARALAEKLDA 528 Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + T IIC + D+ T R + +V K D RRDF+INAL Sbjct: 529 RVREHQKFRTAVIICADGRKIDVATARLEYYEHPAALPMVELSSIKMDLYRRDFSINALA 588 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-ID 183 G+++D+ GG DL+++ I+ + +ED RI+R RF +G + Sbjct: 589 VHLNPQNMGRLVDFFGGQRDLKDKVIRVLH--SLSFVEDPTRIVRAIRFEQRFGFRIGAQ 646 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ L+ + LS RI+ E+ + E PL ++ M N G+ K I ++ +S Sbjct: 647 TEKLIKNALELNIFHQLSGSRIFHELQMIFEEDTPLPCLIRMENYGLLKHIHPMLK-LSS 705 Query: 244 DQLSQVIEAEQVFEW--------KIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 + + + E E+V W KID L + L++ ++ + ++F+ ++ Sbjct: 706 NVKNILTETEKVINWFQLLYLEEKIDKWILYMLGLLNHINEVQAGIIMQRFNFSQKKTRH 765 Query: 295 LISFF---NCNFNQKTLSIPEIKKL--FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 + S N + + + KL Y + + + L +A Q Sbjct: 766 IFSLRSQINSAMSSISAWHQDQGKLSSLYFILNPLPLEGLLFLMARV------QKEELRK 819 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 V I H + ++G D+ K G+ PG + G IL K I+ QE + + Sbjct: 820 YVSHYITHLRDIQPQISGRDLKKMGLTPGPEFGRILKELKAAQIDGVACDRQEQKEWVRQ 879 Query: 410 KLIASS 415 K+ S Sbjct: 880 KIAEQS 885 >gi|313646476|gb|EFS10937.1| poly(A) polymerase family protein [Shigella flexneri 2a str. 2457T] Length = 437 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 17 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 193 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 251 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 252 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 311 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 312 TYHDAFALAMNDVLDEACRSLAIPK 336 >gi|322812375|pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) gi|322812376|pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii) Length = 415 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 18 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 74 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 75 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 133 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 134 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 193 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 194 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 252 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 253 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 312 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 313 TYHDAFALAMNDVLDEACRSLAIPK 337 >gi|170021503|ref|YP_001726457.1| poly(A) polymerase I [Escherichia coli ATCC 8739] gi|169756431|gb|ACA79130.1| poly(A) polymerase [Escherichia coli ATCC 8739] gi|242375976|emb|CAQ30658.1| poly(A) polymerase I [Escherichia coli BL21(DE3)] Length = 465 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 45 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 220 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 221 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 279 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 280 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 339 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 340 TYHDAFALAMNDVLDEACRSLAIPK 364 >gi|16763574|ref|NP_459189.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16418686|gb|AAL19148.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261245416|emb|CBG23206.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991868|gb|ACY86753.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156811|emb|CBW16287.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323128504|gb|ADX15934.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987136|gb|AEF06119.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 472 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 228 -MHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 287 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 AYYDAFALAMNDVLDEACRSLAIPK 371 >gi|330996014|ref|ZP_08319908.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Paraprevotella xylaniphila YIT 11841] gi|329574011|gb|EGG55589.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Paraprevotella xylaniphila YIT 11841] Length = 493 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 179/466 (38%), Gaps = 63/466 (13%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 ++ K FH I + ++ + +VGG VRD + QDID+ T + + Sbjct: 12 LLDKKIFHQ-----ISEVADEQGVECYVVGGYVRDLFLERPSQDIDVVTVGSGIALAKAL 66 Query: 64 SKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + R + ++GT ++ R + R + + VV + D RRD Sbjct: 67 AGRLGRGARLSVFSNFGTAQVKFRGMEVEFVGARKESYSHDSRKPVVEDGTLEDDQNRRD 126 Query: 122 FTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 FTINAL ++ G+++D G+ D+ +R I+ D +D LR++R RF Sbjct: 127 FTINALAVCLNRERFGELVDPFDGVWDMEDRLIRTPLDPDITFSDDPLRMMRCVRFATQL 186 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 ID + A + ++ +KI+S ERI E+NK++ P V + G+ IF + Sbjct: 187 NFY-IDEETFEALERNRERIKIVSRERIADELNKIMMTPTPSKGFVELARCGLLPLIFPE 245 Query: 238 VQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMA---- 282 + + D +E D+L LR+ L+ K Sbjct: 246 LAAMEGVEKVKGRAHKDNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKPRTKRFDPVAG 305 Query: 283 ------------------KKFSLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFY 318 +K LP E ++ + ++ E +++L + Sbjct: 306 WTFHNHNFIGSKMVPDIFRKMKLPMNEKMKYVQKMVELHMRPIVIADEEVTDSAVRRLLF 365 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDD 369 GD + + + A + + F+ L L + + P++G++ Sbjct: 366 EAGDDIE-DLMTLCEADITSKNAQRKQRFLDNFKLVRRKLVDLEERDRVRNFQPPVSGEE 424 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL-HHLLRKLIA 413 ++ +G+PP ++VG++ K ++ + +LR+ + Sbjct: 425 IMAVFGLPPCREVGSLKSAIKDAILDGVVPNEHDAAYEFMLRRAVK 470 >gi|218703399|ref|YP_002410918.1| poly(A) polymerase I [Escherichia coli UMN026] gi|218430496|emb|CAR11362.1| poly(A) polymerase I [Escherichia coli UMN026] Length = 472 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYNLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|331645278|ref|ZP_08346389.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli M605] gi|30039945|gb|AAP15679.1| poly(A) polymerase I [Shigella flexneri 2a str. 2457T] gi|56383162|gb|AAN41798.2| poly(A) polymerase I [Shigella flexneri 2a str. 301] gi|281177366|dbj|BAI53696.1| poly(A) polymerase [Escherichia coli SE15] gi|330909990|gb|EGH38500.1| polyA polymerase [Escherichia coli AA86] gi|331046035|gb|EGI18154.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli M605] gi|332762142|gb|EGJ92411.1| poly(A) polymerase family protein [Shigella flexneri 4343-70] gi|332762374|gb|EGJ92641.1| poly(A) polymerase family protein [Shigella flexneri 2747-71] gi|332764987|gb|EGJ95215.1| poly(A) polymerase family protein [Shigella flexneri K-671] gi|332768930|gb|EGJ99109.1| poly(A) polymerase I [Shigella flexneri 2930-71] gi|333009186|gb|EGK28642.1| poly(A) polymerase family protein [Shigella flexneri K-218] gi|333010635|gb|EGK30068.1| poly(A) polymerase family protein [Shigella flexneri VA-6] gi|333022260|gb|EGK41498.1| poly(A) polymerase family protein [Shigella flexneri K-304] Length = 454 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|37524869|ref|NP_928213.1| poly(A) polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784294|emb|CAE13169.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 521 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 147/393 (37%), Gaps = 42/393 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D DIAT P++V ++F R Sbjct: 101 SENALKVLYRLNKSGFEAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRL--- 157 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR-------------YAKVVFTRDWKADSL 118 + I+ ++ ++ T R G + + D++ Sbjct: 158 -VGRRFRLAHIMFGQEVIEVATFRGPHEQTGSDDKNQSQQAQSGMLLRDNIFGSIEEDAM 216 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DY GGL+DL I+ IGD R ED +R+LR RF + Sbjct: 217 RRDFTINSLYYGINDFSLRDYAGGLHDLETGVIRLIGDPETRYREDPVRMLRAIRFASKL 276 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 I + L + R++ E KLL+ + + +F+ +F Sbjct: 277 N-MTISEGTAEPISRLAFLLSNIPPARLFEESLKLLQTGQGYSTYQLLREYRLFQPLFPL 335 Query: 238 VQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 +Q + +E QV + +++ F ++ + + ++++ Sbjct: 336 IQRYFTENNDSPMERIVNQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQEGG 395 Query: 287 LPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIFLA 334 L + L + +++IP+ +L +G + Sbjct: 396 LAYYDAFALAMNDILDEQCHSIAIPKRLTTIMRDIWQLQLRLPRRHGKRANKLMEHPKFR 455 Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 Y+ L + L +++HW + Sbjct: 456 AAYDLLELRANVENRNELKELVHWWGEFQQVNA 488 >gi|300919704|ref|ZP_07136192.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1] gi|300413238|gb|EFJ96548.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1] Length = 454 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 151/374 (40%), Gaps = 34/374 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + L + ++L+IP+ + + + ++ + K L + + Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQSKRAWKLLEHP-KFR 387 Query: 344 DTCFILQVLSDIIH 357 +L + +++ Sbjct: 388 AAYDLLALRAEVER 401 >gi|312883975|ref|ZP_07743692.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368433|gb|EFP95968.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122] Length = 451 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L L+ + +VGG VRD L+ + +D DIAT P+++ ++F Sbjct: 29 ISRKKISD-NALKVLYRLHGAGFDAFLVGGGVRDLLLGQNPKDFDIATNATPEQIRQLFK 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R DG + Sbjct: 88 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKDGMLLRDNVYGSID 143 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NA+Y + + DY G+ DL ++ ++ IGD R ED +R+LR RF Sbjct: 144 EDAERRDFTVNAMYYNIGDYSIHDYASGVEDLEDKLVRLIGDPETRYREDPVRMLRAIRF 203 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + +I+ D + L+ + + R++ E K+L++ L M G+F++ Sbjct: 204 AVKL-DFDIEEDTAEPIERLALLLQDIPAARLYEESLKMLQSGYGLETYHLMREYGLFQQ 262 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F + E D S + EQ+ + +DS Sbjct: 263 LFPTIAEYFTDDYSSM--TEQMLDLVLDS 289 >gi|255011076|ref|ZP_05283202.1| putative polyA polymerase [Bacteroides fragilis 3_1_12] gi|313148884|ref|ZP_07811077.1| tRNA nucleotidyltransferase [Bacteroides fragilis 3_1_12] gi|313137651|gb|EFR55011.1| tRNA nucleotidyltransferase [Bacteroides fragilis 3_1_12] Length = 483 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 82/433 (18%), Positives = 169/433 (39%), Gaps = 57/433 (13%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT--SISYGTIKII 83 + +VGG VRD + +DID+ + K + ++GT ++ Sbjct: 31 GLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRLGRGAHVSVFKNFGTAQVK 90 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYV 139 + R + +V + D RRDFTINAL ++ G+++D Sbjct: 91 YHGTEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTINALAVCLNKERFGELVDPF 150 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GG+NDL+ + I+ D +D LR++R RF ID D + + ++ ++I Sbjct: 151 GGMNDLKEKVIRTPLDPDITFSDDPLRMMRCIRFATQLNFY-IDDDTFESLCRNRERIEI 209 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLDQLSQV 249 +S ERI E+NK++ + P + + G+ IF ++ + D Sbjct: 210 ISRERIADELNKIMLSPIPSKGFIDLDRSGLLALIFPELVALQGVETRNGRAHKDNFYHT 269 Query: 250 IEAEQVFEWKIDSL-LRFIVLIS----------------------WQDKKSILSMAKKFS 286 +E D+L LR+ L+ + +K I ++ ++ Sbjct: 270 LEVLDNISKVTDNLWLRWAALLHDIAKPVTKRWEPKAGWTFHNHNFIGEKMIPNIFRRMK 329 Query: 287 LP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 LP E ++ + + ++ +++L + GD + + + A + Sbjct: 330 LPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGDDI-DDLMTLCEADITSKN 388 Query: 341 THQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQ 390 T + F+ L+ L + + P++G+++++ + + P K+VG++ K Sbjct: 389 TERKQRFLNNFQLVRRKLKDLEEKDRVRNFQPPVSGEEIMEVFNLGPCKEVGSLKSAIKD 448 Query: 391 EWINSSFQLSQED 403 ++ E Sbjct: 449 AILDGVIPNEYEA 461 >gi|115311614|sp|Q8ZRQ8|PCNB_SALTY RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein Length = 465 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 45 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 220 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 221 -MHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 279 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 280 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 339 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 340 AYYDAFALAMNDVLDEACRSLAIPK 364 >gi|328474187|gb|EGF44992.1| poly(A) polymerase [Vibrio parahaemolyticus 10329] Length = 455 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 69/270 (25%), Positives = 120/270 (44%), Gaps = 20/270 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 31 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFR 89 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDW 113 R + I+ + ++ T R +G + Sbjct: 90 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKNISQQSKEGMLLRDNVYGTI 145 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR R Sbjct: 146 DEDAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVR 205 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + +I+ D + L+ + S R++ E KLL++ + L + +F+ Sbjct: 206 FAVKL-DFDIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNLFQ 264 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ++F + E + S EQ+ + +DS Sbjct: 265 QLFPAISEHFTEDYSS--HTEQMLDLVLDS 292 >gi|126175689|ref|YP_001051838.1| poly(A) polymerase [Shewanella baltica OS155] gi|125998894|gb|ABN62969.1| poly(A) polymerase [Shewanella baltica OS155] Length = 450 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 107/249 (42%), Gaps = 17/249 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK K+ +VGG VRD L+ + +D D+ T P+ + ++F Sbjct: 7 TISRKQIS-ENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLF 65 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDW 113 R + I+ + ++ T R +GR + + Sbjct: 66 RNCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEI 121 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFT+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR R Sbjct: 122 DEDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRAVR 181 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F I++ + LK + + R++ E+ KL A L M +F Sbjct: 182 FATKLN-MGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFA 240 Query: 233 EIFLDVQEI 241 +F V + Sbjct: 241 PLFPQVAAL 249 >gi|288927029|ref|ZP_06420922.1| polyA polymerase family protein [Prevotella buccae D17] gi|288336203|gb|EFC74591.1| polyA polymerase family protein [Prevotella buccae D17] Length = 488 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 169/469 (36%), Gaps = 67/469 (14%) Query: 5 VQHKWFHDSDLINILSLLNKGED-KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 D D+ + +S + +VGG VRD + DID+ +V Sbjct: 7 ADLAQLLDKDIFHQISRAADSLHAECYVVGGYVRDLFLERPSGDIDVVVVGSGIQVADAL 66 Query: 64 SKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K + ++GT ++ + + R + + VV + D RRD Sbjct: 67 KKQLGRKAHISVFRNFGTAQVKYKGLEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRD 126 Query: 122 FTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 FTINAL D+ G+++D G+ DL I D +D LR++R RF Sbjct: 127 FTINALAVCLNGDRFGQLVDPFDGIRDLEEGIIATPLDPDITFSDDPLRMMRCVRFATQL 186 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 +I+ A + + LKI+S ERI E+NK++ A +P +++ G+ I + Sbjct: 187 N-FDIEPATYDALSRNARRLKIISGERIADEMNKIMLAPHPSKGFYYLHETGLLYLILPE 245 Query: 238 VQEIS--------------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277 + ++ L+ + + A + +R+ L K Sbjct: 246 LCQLDIVETRNGRAHKNNYYHTLEVLENVCRAASAPDCPSPETHLWIRWAALFHDIGKPR 305 Query: 278 ----------------------ILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-- 312 + + ++ LP + + ++ + ++ E Sbjct: 306 SKRWDNVQGWTFHNHNNIGARMVADIFRRMKLPMDAKMKYVQKLVELHMRPIAIADEEVT 365 Query: 313 ---IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKK 360 +++L GD + + + A + + F+ L + + + Sbjct: 366 DSAVRRLVNDAGDDI-DDLMLLCEADITSKNQVRKARFLENFRIVREKIADLRERDYKRL 424 Query: 361 PLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+++++ +PP ++VG + K +++ +E L LL Sbjct: 425 LQPVIDGNEIMEMFHLPPCREVGTLKQVLKNAVLDNEVPNEREPLMALL 473 >gi|205357046|ref|ZP_02344374.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324360|gb|EDZ12199.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 437 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F ++ Sbjct: 193 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPNI 251 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 252 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 311 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 312 AYYDAFALAMNDVLDEACRSLAIPK 336 >gi|307629719|gb|ADN74023.1| poly(A) polymerase I [Escherichia coli UM146] Length = 454 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 151/374 (40%), Gaps = 34/374 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + L + ++L+IP+ + + + ++ + K L + + Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQAKRAWKLLEHP-KFR 387 Query: 344 DTCFILQVLSDIIH 357 +L + +++ Sbjct: 388 AAYDLLALRAEVER 401 >gi|270295998|ref|ZP_06202198.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479566|ref|ZP_07938693.1| poly A polymerase head domain-containing protein [Bacteroides sp. 4_1_36] gi|270273402|gb|EFA19264.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904228|gb|EFV26055.1| poly A polymerase head domain-containing protein [Bacteroides sp. 4_1_36] Length = 476 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 87/456 (19%), Positives = 174/456 (38%), Gaps = 57/456 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++F D I ++ + +VGG VRD + +DID+ + K Sbjct: 11 QYFSDDIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRL 70 Query: 68 YKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT ++ + R + T +V + D RRDFTIN Sbjct: 71 GRGAHVSVFKNFGTAQLKYYGTEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTIN 130 Query: 126 ALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL G+++D GG+ DL+ +TI+ D +D LR++R RF G Sbjct: 131 ALAVCLNRVRYGELVDPFGGIGDLKEKTIRTPLDPDITFSDDPLRMMRCVRFATQLGFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID + + + ++ + I+S ERI E+NK++ + P + + G+ + IF ++ + Sbjct: 190 IDDETFDSLERNRERISIISKERIADELNKIILSPIPSKGFIELDRCGLLELIFPELVRL 249 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS---------- 280 D +E K D+L LR+ L+ K + Sbjct: 250 QGVETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFH 309 Query: 281 ------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + +K LP E ++ + + ++ +++L + GD Sbjct: 310 NHNFIGEKMIPDIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G++++K Sbjct: 370 DI-DDLMTLCEADITSKNMERKKRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKT 428 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G+ P ++VG + K ++ E + Sbjct: 429 FGLSPCQQVGALKSAIKDAILDGIIPNEYEAARAFM 464 >gi|16759183|ref|NP_454800.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140733|ref|NP_804075.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213650761|ref|ZP_03380814.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25513273|pir||AI0525 poly(A) polymerase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501473|emb|CAD01345.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136357|gb|AAO67924.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 472 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 287 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 AYYDAFALAMNDVLDEACRSLAIPK 371 >gi|19703588|ref|NP_603150.1| Poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713690|gb|AAL94449.1| Poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 451 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 101/442 (22%), Positives = 180/442 (40%), Gaps = 55/442 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LN+ K IVGGA+RD L+ L +D+D T + + + ++FS+ K Sbjct: 14 IGILNKLNEYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKLFSEYNLK--EIGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D + KV F D K D RRDFTINA+ Sbjct: 71 SFGVLRIKINDIDYEIAKFREDNYEEKDGLKIIPEGKKVSFVDDIKNDLTRRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ ++D G D+ N+ I FIG+A RI+ED LR+LR FRF + + ++ D + Sbjct: 131 YNEVEGIVDLYNGQKDIENKVINFIGNAEERIIEDPLRVLRAFRFMSRL-DFSLSEDTIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K LK + E+I E +KLL KN N + M + G+ + I + + + Sbjct: 190 AIKNQKNLLKNIPEEKITMEFSKLLLGKNIRNTLTLMKDTGVLELIIPEFKATYDFEQCN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSI---------------------- 278 +F D L++ L+ K + Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELKYSALLHDIAKPVVQTFDEKGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFN----------QKTLSIPEIKKLFYLYGDKVMIAK 328 + + LP ++ + + K LS L+ L + + Sbjct: 310 RDILTRLKLPVKLIETVAEIIKKHMVLYKDVTDKKFNKLLSEMGYDNLWRLIEHCIADNE 369 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 K + N H+ + + + + + G D+++ G G ++G I Sbjct: 370 SKNNEVVSTENDLHEK---LKRAVEKQMQITVNDLAVNGKDLIELGFI-GSEIGKIKEEL 425 Query: 389 KQEWINSSFQLSQEDLHHLLRK 410 ++++ Q +E++ +++ Sbjct: 426 LDKYLSEEVQNEKEEMLEYVKE 447 >gi|227537511|ref|ZP_03967560.1| tRNA adenylyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227242648|gb|EEI92663.1| tRNA adenylyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 472 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 87/456 (19%), Positives = 174/456 (38%), Gaps = 59/456 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRV 59 M +QH F LI L + + ++GG VRD +M + D+DI Sbjct: 1 MSDNLQHPIFS---LIK--DLAQQTSTECYVIGGYVRDRIMGRPFKNDVDIVVIGSGIEF 55 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 + + S+GT ++ + R + +V + D R Sbjct: 56 ADKLGERLNTKVTVYKSFGTAMLVYDGLNIEFVGARKESYRSDSRKPIVENGTLEDDQNR 115 Query: 120 RDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RDFTINA+ G ++D G+ D+ R I+ +D LR++R RF + Sbjct: 116 RDFTINAMAYSLNAHNYGALLDPFNGIEDIEQRVIRTPLAPQETFSDDPLRMMRAIRFAS 175 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G K ID + A ++ + I+S ERI E+NK++ ++ P ++++ G+ + IF Sbjct: 176 QLGFK-IDIHTIEAIYSTRERISIISKERITDELNKIILSEKPSVGFKYLFDTGLLELIF 234 Query: 236 LDVQEI----------SLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + ++ D +E + V E+ D LR+ ++ K + KK Sbjct: 235 PAMYQLHGVDIVEGKGHKDNFYHTLEVLDNVAEYSDDLWLRWAAIMHDIAKPATKRFDKK 294 Query: 285 ----------------------FSLPREIRYF------LISFFNCNFNQKTLSIPEIKKL 316 LP + L+ + ++ +++L Sbjct: 295 LGWTFHGHEDKGARMVPKLFAELKLPLHDKMKFVQKLVLLHLRPIVLAKDIVTDSAVRRL 354 Query: 317 FYLYGDKV----MIAKLKIFLALHYNNLTHQDTCFI----LQVLSDIIHWKKPLFPLTGD 368 + G+ + ++ + Y +++ + L+ + + + P+TG+ Sbjct: 355 LFEAGNDIDALMLLCHADVTTKNEYKKKKYRENFELVKQKLKDVEERDQIRNWQPPITGE 414 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 D++ + + PG++VG I ++ + S+E Sbjct: 415 DIMTVFNLGPGREVGKIKNAIREAILEGDITNSKEQ 450 >gi|261820477|ref|YP_003258583.1| poly(A) polymerase I [Pectobacterium wasabiae WPP163] gi|261604490|gb|ACX86976.1| poly(A) polymerase [Pectobacterium wasabiae WPP163] Length = 482 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 81/407 (19%), Positives = 139/407 (34%), Gaps = 52/407 (12%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + D + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F Sbjct: 50 TISRSDISD-NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLF 108 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVV 108 R + I+ + ++ T R G + Sbjct: 109 RNCRL----VGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQEVKNSSQQAQSGMLLRDN 164 Query: 109 FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 + D+ RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+ Sbjct: 165 IFGSVEEDAQRRDFSINSLYYSISDFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRM 224 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 LR RF A + + + L + + R++ E KLL++ + Sbjct: 225 LRAVRFAAKLN-MTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCE 283 Query: 228 GGIFKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKK 276 +F+ +F + +E QV + +++ F ++ + + Sbjct: 284 YQLFQPLFPLLSRHFTPNGDSTLERMVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPLIE 343 Query: 277 SILSMAKKFSL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 +A++ L I + S + +T K Sbjct: 344 HAQKLAQESGLAYFDAFALAMNDVLDEQCRSLAIPKRITSLVRDIWQLQTRLSRRQGKRA 403 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 Y + L L HQ+ + Q + P Sbjct: 404 YKLMEHPKFRAAYDLLCLRAEIENHQELLRLAQWWGEFQVATPPRQQ 450 >gi|194447575|ref|YP_002044169.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359247|ref|ZP_02668314.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194405879|gb|ACF66098.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337551|gb|EDZ24315.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|312911154|dbj|BAJ35128.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222237|gb|EFX47309.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 437 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 193 -MHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 251 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 252 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 311 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 312 AYYDAFALAMNDVLDEACRSLAIPK 336 >gi|62178754|ref|YP_215171.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205351523|ref|YP_002225324.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855700|ref|YP_002242351.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582031|ref|YP_002635829.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126387|gb|AAX64090.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205271304|emb|CAR36095.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707503|emb|CAR31777.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466558|gb|ACN44388.1| polyA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713208|gb|EFZ04779.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326626549|gb|EGE32892.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 472 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 287 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 AYYDAFALAMNDVLDEACRSLAIPK 371 >gi|320539917|ref|ZP_08039576.1| poly(A) polymerase I [Serratia symbiotica str. Tucson] gi|320030103|gb|EFW12123.1| poly(A) polymerase I [Serratia symbiotica str. Tucson] Length = 435 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 141/396 (35%), Gaps = 49/396 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK +S +VGG VRD L+ +D DI T P++V ++F R Sbjct: 17 SENALKVLYRLNKSGYESYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-------------VVFTRDWKADSL 118 + ++ + ++ T R Y K + D+ Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEQTPEYDKNSSQQAQNGMLLRDNIFGSIEEDAQ 132 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTIN+LY + DYV GL DL+ R I+ IGD R ED +R+LR RF A Sbjct: 133 RRDFTINSLYYGVADFTLRDYVNGLRDLQQRVIRLIGDPETRYREDPVRMLRAVRFAAKL 192 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G I + + L + R++ E KLL A + + +F+ +F Sbjct: 193 G-MTISDETAEPIPRLASLLHEIPPARLFEESLKLLLAGYGYPTYLKLCEYQLFQPLFPL 251 Query: 238 VQEISLDQLSQVIEAEQVFEWK-IDSLLR----------FIVLISWQDKKSILSMAKKFS 286 + + ++E V K ID LL+ F ++ + +A++ Sbjct: 252 IARHFTPNHATLMERTLVQALKNIDHLLQNSMGVTPAFLFAAMLWHPLLEHAQKLAQESG 311 Query: 287 L-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 L I + + + + K + D+ Sbjct: 312 LGYYDAFALAMNDVLDEQCRSLAIPKRITALVRDIWQLQLRLTRRQDKRAHKLMDRPQFH 371 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 LAL ++Q+ + + + Sbjct: 372 AAYNLLALRAEVESNQEMLHLSEWWGEFQRATPARQ 407 >gi|293408235|ref|ZP_06652075.1| pcnB [Escherichia coli B354] gi|301026010|ref|ZP_07189491.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1] gi|331671653|ref|ZP_08372451.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA280] gi|291472486|gb|EFF14968.1| pcnB [Escherichia coli B354] gi|300395720|gb|EFJ79258.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1] gi|331071498|gb|EGI42855.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA280] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|117622430|ref|YP_851343.1| poly(A) polymerase I [Escherichia coli APEC O1] gi|168751363|ref|ZP_02776385.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113] gi|168755755|ref|ZP_02780762.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401] gi|168764713|ref|ZP_02789720.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501] gi|168770386|ref|ZP_02795393.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486] gi|168782034|ref|ZP_02807041.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076] gi|168789251|ref|ZP_02814258.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869] gi|168801481|ref|ZP_02826488.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508] gi|170680324|ref|YP_001742271.1| poly(A) polymerase I [Escherichia coli SMS-3-5] gi|187731223|ref|YP_001878946.1| poly(A) polymerase I [Shigella boydii CDC 3083-94] gi|188493474|ref|ZP_03000744.1| poly(A) polymerase [Escherichia coli 53638] gi|191166336|ref|ZP_03028168.1| poly(A) polymerase [Escherichia coli B7A] gi|191172771|ref|ZP_03034308.1| poly(A) polymerase [Escherichia coli F11] gi|193063166|ref|ZP_03044257.1| poly(A) polymerase [Escherichia coli E22] gi|194428279|ref|ZP_03060821.1| poly(A) polymerase [Escherichia coli B171] gi|194433394|ref|ZP_03065673.1| poly(A) polymerase [Shigella dysenteriae 1012] gi|195938175|ref|ZP_03083557.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4024] gi|208807142|ref|ZP_03249479.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206] gi|208814587|ref|ZP_03255916.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045] gi|208821338|ref|ZP_03261658.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042] gi|209398537|ref|YP_002268752.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4115] gi|215485303|ref|YP_002327734.1| poly(A) polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|217326217|ref|ZP_03442301.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588] gi|227884943|ref|ZP_04002748.1| polynucleotide adenylyltransferase [Escherichia coli 83972] gi|256025455|ref|ZP_05439320.1| poly(A) polymerase I [Escherichia sp. 4_1_40B] gi|260842377|ref|YP_003220155.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009] gi|261226898|ref|ZP_05941179.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261255302|ref|ZP_05947835.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|300816181|ref|ZP_07096404.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1] gi|300938547|ref|ZP_07153283.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1] gi|300949830|ref|ZP_07163800.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1] gi|300956012|ref|ZP_07168342.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1] gi|300984714|ref|ZP_07177077.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1] gi|300993664|ref|ZP_07180491.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1] gi|301028631|ref|ZP_07191857.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1] gi|301049947|ref|ZP_07196868.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1] gi|301646461|ref|ZP_07246340.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1] gi|307136743|ref|ZP_07496099.1| poly(A) polymerase I [Escherichia coli H736] gi|307311408|ref|ZP_07591050.1| poly(A) polymerase [Escherichia coli W] gi|309796317|ref|ZP_07690726.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7] gi|312966274|ref|ZP_07780500.1| poly(A) polymerase family protein [Escherichia coli 2362-75] gi|331640597|ref|ZP_08341745.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H736] gi|331651047|ref|ZP_08352075.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli M718] gi|331661215|ref|ZP_08362147.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA206] gi|331681528|ref|ZP_08382165.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H299] gi|25389668|pir||C90647 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|13359603|dbj|BAB33570.1| poly(A) polymerase I [Escherichia coli O157:H7 str. Sakai] gi|73854241|gb|AAZ86948.1| poly(A) polymerase I [Shigella sonnei Ss046] gi|115511554|gb|ABI99628.1| poly(A) polymerase I [Escherichia coli APEC O1] gi|170518042|gb|ACB16220.1| poly(A) polymerase [Escherichia coli SMS-3-5] gi|187428215|gb|ACD07489.1| poly(A) polymerase [Shigella boydii CDC 3083-94] gi|188014580|gb|EDU52702.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113] gi|188488673|gb|EDU63776.1| poly(A) polymerase [Escherichia coli 53638] gi|189000464|gb|EDU69450.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076] gi|189356985|gb|EDU75404.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401] gi|189360734|gb|EDU79153.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486] gi|189365327|gb|EDU83743.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501] gi|189371104|gb|EDU89520.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869] gi|189376394|gb|EDU94810.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508] gi|190903587|gb|EDV63304.1| poly(A) polymerase [Escherichia coli B7A] gi|190906921|gb|EDV66523.1| poly(A) polymerase [Escherichia coli F11] gi|192931074|gb|EDV83677.1| poly(A) polymerase [Escherichia coli E22] gi|194413654|gb|EDX29934.1| poly(A) polymerase [Escherichia coli B171] gi|194418322|gb|EDX34412.1| poly(A) polymerase [Shigella dysenteriae 1012] gi|208726943|gb|EDZ76544.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206] gi|208735864|gb|EDZ84551.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045] gi|208741461|gb|EDZ89143.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042] gi|209159937|gb|ACI37370.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4115] gi|209746094|gb|ACI71354.1| poly(A) polymerase I [Escherichia coli] gi|209746096|gb|ACI71355.1| poly(A) polymerase I [Escherichia coli] gi|209746098|gb|ACI71356.1| poly(A) polymerase I [Escherichia coli] gi|209746100|gb|ACI71357.1| poly(A) polymerase I [Escherichia coli] gi|209746102|gb|ACI71358.1| poly(A) polymerase I [Escherichia coli] gi|215263375|emb|CAS07694.1| poly(A) polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|217322438|gb|EEC30862.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588] gi|227838081|gb|EEJ48547.1| polynucleotide adenylyltransferase [Escherichia coli 83972] gi|257757524|dbj|BAI29021.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009] gi|260450652|gb|ACX41074.1| poly(A) polymerase [Escherichia coli DH1] gi|294490657|gb|ADE89413.1| poly(A) polymerase [Escherichia coli IHE3034] gi|299878345|gb|EFI86556.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1] gi|300298309|gb|EFJ54694.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1] gi|300306620|gb|EFJ61140.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1] gi|300317139|gb|EFJ66923.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1] gi|300406499|gb|EFJ90037.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1] gi|300450779|gb|EFK14399.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1] gi|300456499|gb|EFK19992.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1] gi|300531388|gb|EFK52450.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1] gi|301075330|gb|EFK90136.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1] gi|306908387|gb|EFN38885.1| poly(A) polymerase [Escherichia coli W] gi|308120021|gb|EFO57283.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7] gi|312289517|gb|EFR17411.1| poly(A) polymerase family protein [Escherichia coli 2362-75] gi|315059363|gb|ADT73690.1| poly(A) polymerase I [Escherichia coli W] gi|315134834|dbj|BAJ41993.1| poly(A) polymerase I [Escherichia coli DH1] gi|315285223|gb|EFU44668.1| polynucleotide adenylyltransferase [Escherichia coli MS 110-3] gi|315294623|gb|EFU53970.1| polynucleotide adenylyltransferase [Escherichia coli MS 153-1] gi|315300716|gb|EFU59943.1| polynucleotide adenylyltransferase [Escherichia coli MS 16-3] gi|315616374|gb|EFU96992.1| poly(A) polymerase family protein [Escherichia coli 3431] gi|320177485|gb|EFW52481.1| Poly(A) polymerase [Shigella dysenteriae CDC 74-1112] gi|320186563|gb|EFW61288.1| Poly(A) polymerase [Shigella flexneri CDC 796-83] gi|320190332|gb|EFW64982.1| Poly(A) polymerase [Escherichia coli O157:H7 str. EC1212] gi|320639950|gb|EFX09535.1| poly(A) polymerase I [Escherichia coli O157:H7 str. G5101] gi|320647543|gb|EFX16338.1| poly(A) polymerase I [Escherichia coli O157:H- str. 493-89] gi|320652877|gb|EFX21115.1| poly(A) polymerase I [Escherichia coli O157:H- str. H 2687] gi|320658265|gb|EFX25994.1| poly(A) polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663575|gb|EFX30859.1| poly(A) polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320668887|gb|EFX35682.1| poly(A) polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323160155|gb|EFZ46115.1| poly(A) polymerase family protein [Escherichia coli E128010] gi|323166039|gb|EFZ51819.1| poly(A) polymerase family protein [Shigella sonnei 53G] gi|323181842|gb|EFZ67255.1| poly(A) polymerase family protein [Escherichia coli 1357] gi|323190462|gb|EFZ75737.1| poly(A) polymerase family protein [Escherichia coli RN587/1] gi|323934984|gb|EGB31357.1| poly(A) polymerase [Escherichia coli E1520] gi|323939892|gb|EGB36091.1| poly(A) polymerase [Escherichia coli E482] gi|323945619|gb|EGB41668.1| poly(A) polymerase [Escherichia coli H120] gi|323950857|gb|EGB46734.1| poly(A) polymerase [Escherichia coli H252] gi|323955105|gb|EGB50880.1| poly(A) polymerase [Escherichia coli H263] gi|323970690|gb|EGB65945.1| poly(A) polymerase [Escherichia coli TA007] gi|324008275|gb|EGB77494.1| polynucleotide adenylyltransferase [Escherichia coli MS 57-2] gi|324012201|gb|EGB81420.1| polynucleotide adenylyltransferase [Escherichia coli MS 60-1] gi|324017792|gb|EGB87011.1| polynucleotide adenylyltransferase [Escherichia coli MS 117-3] gi|324118493|gb|EGC12387.1| poly(A) polymerase [Escherichia coli E1167] gi|326339802|gb|EGD63610.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1044] gi|326345137|gb|EGD68880.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1125] gi|331040343|gb|EGI12550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H736] gi|331051501|gb|EGI23550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli M718] gi|331052257|gb|EGI24296.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA206] gi|331081749|gb|EGI52910.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H299] gi|332095178|gb|EGJ00207.1| poly(A) polymerase family protein [Shigella boydii 5216-82] gi|332097927|gb|EGJ02900.1| poly(A) polymerase family protein [Shigella dysenteriae 155-74] gi|332098923|gb|EGJ03874.1| poly(A) polymerase family protein [Shigella boydii 3594-74] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|315634141|ref|ZP_07889430.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393] gi|315477391|gb|EFU68134.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393] Length = 485 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 77/434 (17%), Positives = 162/434 (37%), Gaps = 56/434 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKT 66 + + + ++ L + ++ +VGG +RD L+ +D D+AT P+++ +F + Sbjct: 62 PRMFNRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQRQC 121 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R+ +G + + Sbjct: 122 RL----VGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSEEGMLLRDNVYGTLEQ 177 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDF++NALY + + DY G+ DL+N ++ IGD R ED +R+LR RF Sbjct: 178 DAERRDFSVNALYYNPQDNTLKDYFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFM 237 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A E +D LK + R++ E KLL++ + + + G+F+++ Sbjct: 238 AKL-EMFLDKPSEAPIKSLAHLLKNIPPARLFEESLKLLQSGHGVKTYQLLRQYGLFEQL 296 Query: 235 FLDVQEISLDQ---------LSQVIEAEQVF--EWKIDSLLRFIVLISWQDKKSILSMAK 283 F + ++ L +I ++ + I+ F + ++ + ++ Sbjct: 297 FPLLPTYFTEREDSMAEKMILRALISTDERVADKLPINPAFLFAAFFWYPLRERVETLKN 356 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + L Y L S + L++P + + L + Q Sbjct: 357 EGGLNNNDAYALASNDLLDVLCNALAVPR------RHTTVIRDIWSLQLQFLKRTPKSVQ 410 Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDV--VKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 + + G D+ ++ I G+ V W F + Sbjct: 411 RAIEQSKFRA-------------GFDLLVMRAEIEGGEAV-----ELAAWWHEYQFSN-E 451 Query: 402 EDLHHLLRKLIASS 415 L+++L + Sbjct: 452 SQRQDLVKELPSQP 465 >gi|28899278|ref|NP_798883.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633] gi|308094714|ref|ZP_05891383.2| polyA polymerase [Vibrio parahaemolyticus AN-5034] gi|308125331|ref|ZP_05774567.2| polyA polymerase [Vibrio parahaemolyticus K5030] gi|28807502|dbj|BAC60767.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633] gi|308089641|gb|EFO39336.1| polyA polymerase [Vibrio parahaemolyticus AN-5034] gi|308111753|gb|EFO49293.1| polyA polymerase [Vibrio parahaemolyticus K5030] Length = 453 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 69/270 (25%), Positives = 120/270 (44%), Gaps = 20/270 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 29 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFR 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDW 113 R + I+ + ++ T R +G + Sbjct: 88 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKNISQQSKEGMLLRDNVYGTI 143 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR R Sbjct: 144 DEDAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVR 203 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + +I+ D + L+ + S R++ E KLL++ + L + +F+ Sbjct: 204 FAVKL-DFDIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNLFQ 262 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ++F + E + S EQ+ + +DS Sbjct: 263 QLFPAISEHFTEDYSS--HTEQMLDLVLDS 290 >gi|260771220|ref|ZP_05880147.1| poly(A) polymerase [Vibrio furnissii CIP 102972] gi|260613817|gb|EEX39009.1| poly(A) polymerase [Vibrio furnissii CIP 102972] gi|315179174|gb|ADT86088.1| polyA polymerase [Vibrio furnissii NCTC 11218] Length = 456 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 18/262 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 37 SENALKVLYRLHGAGFEAYLVGGGVRDLLLGGKPKDFDVATNATPEQIRQLFRNCRL--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ T R G + D+ RRD Sbjct: 94 -IGRRFRLAHIMFGRDIIEVATFRGHHQENNKQIASQSEAGMLLRDNVYGTIDEDAERRD 152 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y + + DY GG+ D+ ++ I+ IGD R ED +R+LR RF + Sbjct: 153 FTINAMYYNIADYSIHDYAGGMEDMDDKLIRLIGDPETRYREDPVRMLRAIRFAVKL-DF 211 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +I+ + L+ + + R++ E K+L++ L M +F+++F + Sbjct: 212 DIEEETAAPIEHLAPLLRDIPAARLYEESLKMLQSGYGLETYHLMREYNLFQQLFPTIAR 271 Query: 241 ISLDQLSQVIEAEQVFEWKIDS 262 D S + EQ+ + +DS Sbjct: 272 HFTDDYSS--QTEQMLDLALDS 291 >gi|323964964|gb|EGB60430.1| poly(A) polymerase [Escherichia coli M863] gi|327255121|gb|EGE66724.1| poly(A) polymerase family protein [Escherichia coli STEC_7v] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|320179882|gb|EFW54826.1| Poly(A) polymerase [Shigella boydii ATCC 9905] Length = 435 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 15 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 71 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 72 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 130 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 131 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 190 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 191 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 249 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 250 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 309 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 310 TYHDAFALAMNDVLDEACRSLAIPK 334 >gi|284009161|emb|CBA76198.1| poly(A) polymerase I [Arsenophonus nasoniae] Length = 502 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 79/391 (20%), Positives = 154/391 (39%), Gaps = 43/391 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LN ++ +VGG+VRD L+ +D D+ T P+++ ++F Sbjct: 71 ISRRDISD-NALKVLYRLNNAGYEAYLVGGSVRDLLLGKKPKDFDVTTNATPEQIRKLFR 129 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI-------------TDGRYAKVVFTR 111 R + I+ + ++ T R G + Sbjct: 130 NCRL----VGRRFRLAHIMFGYEIIEVATFRGSHEQTDTNNKDMAHKAQSGMLLRDNIFG 185 Query: 112 DWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + + D++RRDFTIN+LY + DYVGG DL N I+ IGD R ED +R+LR Sbjct: 186 NIEDDAIRRDFTINSLYYRINDFTLRDYVGGFEDLNNGMIRLIGDPKIRYREDPVRMLRA 245 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF ID++ + LK + S R++ E KLL+ + + Sbjct: 246 IRFACKLN-MQIDAETAKPIPQLAYLLKDIPSARLFEESLKLLQTGQGYQTYQQLKRYNL 304 Query: 231 FKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279 F+ +F V+ E+ ++Q+ Q + +++ F ++ + + Sbjct: 305 FQSLFPLVERHFTANNDSPMELIINQVLQNTDYRIKNNKRVNPAFLFATMLWYPLVEHAE 364 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIA 327 ++++ LP + + + ++++IP+ +L G K Sbjct: 365 RLSQESGLPYYEAFAIAMNDILDEQCRSIAIPKRLTSIMRDIWQLQLRLPRRQGKKADKL 424 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 ++ L + + L ++ HW Sbjct: 425 LEHPKFRAAFDLLELRANVEKRRELEELAHW 455 >gi|315606302|ref|ZP_07881318.1| polyA polymerase family protein [Prevotella buccae ATCC 33574] gi|315251993|gb|EFU31966.1| polyA polymerase family protein [Prevotella buccae ATCC 33574] Length = 488 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 169/469 (36%), Gaps = 67/469 (14%) Query: 5 VQHKWFHDSDLINILSLLNKGED-KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 D D+ + +S + +VGG VRD + DID+ +V Sbjct: 7 ADLAQLLDKDIFHQISRAADSLHAECYVVGGYVRDLFLERPSGDIDVVVVGSGIQVADAL 66 Query: 64 SKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 K + ++GT ++ + + R + + VV + D RRD Sbjct: 67 KKQLGRKAHISVFRNFGTAQVKYKGLEVEFVGARKESYSHDSRKPVVENGTLEDDQNRRD 126 Query: 122 FTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 FTINAL D+ G+++D G+ DL I D +D LR++R RF Sbjct: 127 FTINALAVCLNGDRFGQLVDPFDGIRDLEEGIIATPLDPDITFSDDPLRMMRCVRFATQL 186 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 +I+ A + + LKI+S ERI E+NK++ A +P +++ G+ I + Sbjct: 187 N-FDIEPATYDALSRNARRLKIVSGERIADEMNKIMLAPHPSKGFYYLHETGLLYLILPE 245 Query: 238 VQEIS--------------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277 + ++ L+ + + A + +R+ L K Sbjct: 246 LCQLDIVETRNGRAHKNNYYHTLEVLENVCRAASAPDCPSPETHLWIRWAALFHDIGKPR 305 Query: 278 ----------------------ILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-- 312 + + ++ LP + + ++ + ++ E Sbjct: 306 SKRWDNVQGWTFHNHNNIGARMVADIFRRMKLPMDAKMKYVQKLVELHMRPIAIADEEVT 365 Query: 313 ---IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKK 360 +++L GD + + + A + + F+ L + + + Sbjct: 366 DSAVRRLVNDAGDDI-DDLMLLCEADITSKNQVRKARFLENFRIVREKIADLRERDYKRL 424 Query: 361 PLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+++++ +PP ++VG + K +++ +E L LL Sbjct: 425 LQPVIDGNEIMEMFHLPPCREVGTLKQVLKNAVLDNEVPNEREPLMALL 473 >gi|317133125|ref|YP_004092439.1| Polynucleotide adenylyltransferase region [Ethanoligenens harbinense YUAN-3] gi|315471104|gb|ADU27708.1| Polynucleotide adenylyltransferase region [Ethanoligenens harbinense YUAN-3] Length = 396 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 161/395 (40%), Gaps = 21/395 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +L++ + ++ +VGG VRD L+ + DIDIAT PD+V +F+KT PT + Sbjct: 11 EMLAVFGRAGIEAWLVGGCVRDGLLGRTPNDIDIATAATPDQVQALFAKTA----PTGVQ 66 Query: 77 YGTIKIICRKKYFDITTLRSDLIT-DGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 YGT+ + C ++TT RS+ T D R+ +VVF + D RRDFTINA+ + Sbjct: 67 YGTVTVFCGGAQAEVTTFRSESGTRDTRHPARVVFGASLRDDLARRDFTINAMAWYPERG 126 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D GG DL+ ++ +G+ R ED LR+LR +RF A G ++ A+++A Sbjct: 127 LYDPFGGEADLKAGLVRAVGEPCLRFAEDALRVLRAYRFAAQLG-FTVEPRTRAAAVEAM 185 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG-GIFKEIFLDVQEISLDQLSQVIEAE 253 LS ER+ E KLL + P+ A + G++ + L V+ + + A Sbjct: 186 PLAAALSGERVREEWEKLLCSPCPVLAF--LPELAGVWCAVGLPVKPMRPPAGLADVPAR 243 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 W + + + + + + + P + Sbjct: 244 AAQRW---------AAFVFLSRVDTGRLFARLHFANRLADEVRALVGVLSGAPLADAPTL 294 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 K + V+ L + L T + +L ++ L G ++ + Sbjct: 295 KAVLERVPPGVLDDGLLLRGLLLGER-TEAARVLLAGILERGEPYRVEHLTLRGGELAEL 353 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G G G Q +Q+ L L Sbjct: 354 GFS-GTACGQAQRALLHYVRFHPEQNTQDRLRAYL 387 >gi|194471610|ref|ZP_03077594.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358330|ref|ZP_03224002.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457974|gb|EDX46813.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335022|gb|EDZ21786.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 269 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 AYYDAFALAMNDVLDEACRSLAIPK 353 >gi|194439099|ref|ZP_03071181.1| poly(A) polymerase [Escherichia coli 101-1] gi|254160263|ref|YP_003043371.1| poly(A) polymerase I [Escherichia coli B str. REL606] gi|297520614|ref|ZP_06939000.1| poly(A) polymerase I [Escherichia coli OP50] gi|300931725|ref|ZP_07147029.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1] gi|312970241|ref|ZP_07784423.1| poly(A) polymerase family protein [Escherichia coli 1827-70] gi|194421918|gb|EDX37923.1| poly(A) polymerase [Escherichia coli 101-1] gi|253972164|gb|ACT37835.1| poly(A) polymerase I [Escherichia coli B str. REL606] gi|253976373|gb|ACT42043.1| poly(A) polymerase I [Escherichia coli BL21(DE3)] gi|300460488|gb|EFK23981.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1] gi|310337739|gb|EFQ02850.1| poly(A) polymerase family protein [Escherichia coli 1827-70] gi|323960087|gb|EGB55733.1| poly(A) polymerase [Escherichia coli H489] gi|332341476|gb|AEE54810.1| poly(A) polymerase PcnB [Escherichia coli UMNK88] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNISDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|56412460|ref|YP_149535.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361396|ref|YP_002141031.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126717|gb|AAV76223.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092871|emb|CAR58297.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 472 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 287 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 AYYDAFALAMNDVLDEACRSLAIPK 371 >gi|212715128|ref|ZP_03323256.1| hypothetical protein BIFCAT_00014 [Bifidobacterium catenulatum DSM 16992] gi|212661809|gb|EEB22384.1| hypothetical protein BIFCAT_00014 [Bifidobacterium catenulatum DSM 16992] Length = 480 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 90/468 (19%), Positives = 179/468 (38%), Gaps = 67/468 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVI 71 + I + + + + +VGG VRD L++ D+D T+ P++ I + R Sbjct: 14 PEAIELGRMFAEEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFW 73 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R++ ++TT RSD D R +V + + D RRDFT+N Sbjct: 74 DMGRKFGTLGAMRRREDGTEVQVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 133 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + +D GG NDL ++ D +D LR++R RF A G + I+ Sbjct: 134 AMALRVPELEFVDPFGGANDLVKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IEP 192 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A ++I+S+ER+ E+ K+L + P I + + G+ +F ++ + L Sbjct: 193 ETAEALTDMVDRIEIVSAERVRDELVKMLLSDRPRAGIEALVDSGLADIVFPEIPALQL- 251 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-----KKSILSMAKKFS---LPREIRYFL- 295 ++ + + VFE + + R + L + D L +A P+ R+ Sbjct: 252 EIDEHHRHKDVFEHTMIVIDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEAG 311 Query: 296 --ISFFNCNFNQKTLSIPEIKKLFYLY--------------------------------- 320 +SF + + ++ +K L + + Sbjct: 312 GKVSFHHHDAVGAKMTRKRLKALHFDHHMVEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 371 Query: 321 -GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + + ++ + L L GD+ Sbjct: 372 KDAGPLYERLNRLTRADATTQNKRKAMVFSSAMDEMEQRVRDLKEKEDFDAIRPDLNGDE 431 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++ GI PG VG H + +++ + ++ L + Q Sbjct: 432 IMQLLGIEPGPLVGKAYKHMLEYRLDNG-PVERDVAVAELNRWYEEQQ 478 >gi|161950166|ref|YP_401882.2| poly(A) polymerase I [Shigella dysenteriae Sd197] Length = 472 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E +QV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIKQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|58699739|ref|ZP_00374391.1| polynucleotide adenylyltransferase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533745|gb|EAL58092.1| polynucleotide adenylyltransferase [Wolbachia endosymbiont of Drosophila ananassae] Length = 246 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 95/219 (43%), Positives = 136/219 (62%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I+ + + ++ +VGG VRDS++ V DID+AT +LP++ ++ K IPT +++ Sbjct: 10 IIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLNH 69 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVID 137 GTI I ++ F+ITTLR D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + D Sbjct: 70 GTITAILNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYD 129 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 Y GG+ DL+ R + FIG+A RI EDYLRILR FRF A ++ + L K + Sbjct: 130 YFGGIEDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCKKHSHMI 189 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + LS ERI EI KLLE +P + M + ++I Sbjct: 190 QNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIP 228 >gi|134103797|ref|YP_001109458.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338] gi|291005745|ref|ZP_06563718.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338] gi|133916420|emb|CAM06533.1| poly(A) polymerase [Saccharopolyspora erythraea NRRL 2338] Length = 499 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 82/457 (17%), Positives = 168/457 (36%), Gaps = 61/457 (13%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + + + +VGG+VRD+L+ D+D T P++V + + V Sbjct: 33 NAPVAEELAERFAAAGHRLYLVGGSVRDALLGRLGTDLDFTTDARPEQVRVLLDEWAETV 92 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GT+ +ITT R+D R +V F + D LRRDFT+NA+ Sbjct: 93 WDTGIQFGTLGAYRHGTTVEITTFRADTYDRVTRNPEVAFGDTIEGDLLRRDFTVNAMAI 152 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + + +D GG+ DL R + +D LR+LR RF + G + Sbjct: 153 ELPKRAFVDLHGGMADLVARRLDTPATPQESFADDPLRMLRAARFVSQLG-FTPAPRVVD 211 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD---- 244 A + ++ ++ ER+ +E++KLL ++P + + G+ + + ++ + L+ Sbjct: 212 AMREMAGEIRRITPERVQTELSKLLCGRHPREGVELLVETGLAEHVLPELPAMKLEIDEH 271 Query: 245 ------------QLSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSM--------- 281 L Q I+ E+ + + D +LR L+ K + Sbjct: 272 HQHKDVYRHSLVVLDQAIDLERAADPDGEPDLVLRLAALLHDIGKPATRRFEPGGGVSFH 331 Query: 282 -------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDK 323 + +++ + + + + +++ G Sbjct: 332 HHEVVGAKMTRKRLRALRYSKDVINDVSGLVYLHLRFHGYGEGQWTDSAVRRYVNDAGH- 390 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK- 372 ++++L + + + + D+ + L G+++++ Sbjct: 391 -LLSRLHKLVRADCTTRNRRKAAALQRSYDDLEARIARIAEEEDLARVRPDLDGNEIMRL 449 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G+ PG VG H K ++ E + L R Sbjct: 450 LGVDPGPVVGKAWKHLKDVRLDRGPMDHDEAVAELFR 486 >gi|115311613|sp|Q8Z9C3|PCNB_SALTI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid copy number protein Length = 465 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 45 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 102 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 160 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 161 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 220 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 221 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 279 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 280 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 339 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 340 AYYDAFALAMNDVLDEACRSLAIPK 364 >gi|288929668|ref|ZP_06423512.1| polyA polymerase family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329173|gb|EFC67760.1| polyA polymerase family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 490 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 88/469 (18%), Positives = 177/469 (37%), Gaps = 66/469 (14%) Query: 4 IVQHKWFHDSDLINILS--LLNKGEDKS-------CIVGGAVRDSLMNLSVQDIDIATTI 54 + K D+ L +L + +K D + +VGG VRD + + DID+ Sbjct: 11 VFSMKILSDAQLAELLDQDIFHKIGDAADALGVPCYVVGGYVRDLFLERASNDIDVVVVG 70 Query: 55 LPDRVMRIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRD 112 +V K+ K ++GT ++ R + R + + +V Sbjct: 71 SGIQVADALRKSLGKKAHISVFRNFGTAQVKFRGYEIEFVGARKESYSHDSRKPIVENGT 130 Query: 113 WKADSLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D RRDFTINA+ A+ G++ID GL DL + I+ D +D LR+L Sbjct: 131 LEDDQNRRDFTINAMAVCLNAENFGQLIDPFDGLYDLEDGIIRTPLDPDITFSDDPLRML 190 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF I+ + A + + +KI+S ERI E+NK++ + P V ++ Sbjct: 191 RCVRFATQLRFF-IEDETFDALTRNAERIKIVSGERIADELNKIMMTQQPSRGFVELHRC 249 Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKS 277 G+ + I ++ + + + F ++ L LR+ L+ K Sbjct: 250 GLLQLILPELTRLDNVETRNGRAHKNNFYHTLEVLDNICQHTDNLWLRWAALLHDVGKAK 309 Query: 278 ILS----------------------MAKKFSLPREIR-YFLISFFNCNFN-----QKTLS 309 + ++ LP + + ++ + + + ++ Sbjct: 310 TKRWDPAAGWTFHNHNFVGAKMVPDLFRRMKLPLDSKMKYVQKLVDLHMRPIVIAEDCVT 369 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKK 360 +++L GD + + A + + F+ L L + + + Sbjct: 370 DSAVRRLMNDAGDDTE-DLMTLCEADITSKNHIKKQRFLDNFRIVREKLADLKERDYKRL 428 Query: 361 PLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+++++ + P ++VG + K +++ +E L LL Sbjct: 429 LQPVIDGNEIMELFHLGPSREVGTLKQTLKDAVLDNRVPNEREPLMQLL 477 >gi|205359858|ref|ZP_02832814.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342490|gb|EDZ29254.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSENDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 269 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 AYYDAFALAMNDVLDEACRSLAIPK 353 >gi|172041689|ref|YP_001801403.1| tRNA nucleotidyltransferase [Corynebacterium urealyticum DSM 7109] gi|171852993|emb|CAQ05969.1| tRNA nucleotidyltransferase [Corynebacterium urealyticum DSM 7109] Length = 521 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 87/454 (19%), Positives = 163/454 (35%), Gaps = 58/454 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 +D+ L + + + +VGG+VRD+++ D+D T PD VM I V Sbjct: 60 NDATLRRLAKAFEEAGHELYLVGGSVRDAMLARLSHDLDFTTDARPDAVMGILEPMAETV 119 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY- 128 T I +GT+ + +ITT R+D R +V F + D +RRDF NA+ Sbjct: 120 WDTGIEFGTVSALVGGLEVEITTFRADQYDGQSRNPEVTFGDTLEGDLVRRDFRANAMAL 179 Query: 129 ---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 AD + + D +GGL D+ + +D LR+LR RF + G + Sbjct: 180 KLSADGEHEFCDPLGGLADVAAGVLDTPDSPEVSFRDDPLRMLRACRFVSQLG-FAVAPR 238 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241 A + ++ ++ ER+ E+NKLL P + M G+ + ++ + Sbjct: 239 VAEAMVAMADQIQRITVERVAVELNKLLLGTAPWEGLDLMVEAGLADYVLPELPRLRMTQ 298 Query: 242 ------------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM-------- 281 SL L + EQ + + D LR+ L+ K + Sbjct: 299 DEHKQHKDVYWHSLTVLRNALVQEQNYGVEPDLELRWAALLHDCGKPDTRAFTESGQVTF 358 Query: 282 --------------AKKFSLPREIRYFLISFFNCNFNQ---KTLSIPEIKKLFYLYGDKV 324 +K +++ + + + + Y+ Sbjct: 359 HQHEVVGAKLVRRRLRKLKFSKQLVKDISQLVFLHMRFYGYGDSAWTDSAVRRYVTDAGD 418 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-Y 373 ++ KL + + + + + D+ L G+++++ Sbjct: 419 LLPKLHMLVRADCTTRNKRKGARLRRNYDDLERRIEELKEKEDLAAVRPDLDGNEIMEIL 478 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 G+ PG +VG K+ ++ E + L Sbjct: 479 GLKPGPEVGQAWAFLKELRLDRGPLGRDEAIAEL 512 >gi|157159375|ref|YP_001461313.1| poly(A) polymerase I [Escherichia coli E24377A] gi|157159609|ref|YP_001456927.1| poly(A) polymerase I [Escherichia coli HS] gi|260853354|ref|YP_003227245.1| poly(A) polymerase I [Escherichia coli O26:H11 str. 11368] gi|260866293|ref|YP_003232695.1| poly(A) polymerase I [Escherichia coli O111:H- str. 11128] gi|300825359|ref|ZP_07105437.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7] gi|300905560|ref|ZP_07123319.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1] gi|300923068|ref|ZP_07139133.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1] gi|301303752|ref|ZP_07209872.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1] gi|301330067|ref|ZP_07222743.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1] gi|331666385|ref|ZP_08367266.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA271] gi|331680723|ref|ZP_08381382.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H591] gi|157065289|gb|ABV04544.1| poly(A) polymerase [Escherichia coli HS] gi|157081405|gb|ABV21113.1| poly(A) polymerase [Escherichia coli E24377A] gi|257752003|dbj|BAI23505.1| poly(A) polymerase I [Escherichia coli O26:H11 str. 11368] gi|257762649|dbj|BAI34144.1| poly(A) polymerase I [Escherichia coli O111:H- str. 11128] gi|300402593|gb|EFJ86131.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1] gi|300420630|gb|EFK03941.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1] gi|300522172|gb|EFK43241.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7] gi|300840879|gb|EFK68639.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1] gi|300843913|gb|EFK71673.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1] gi|315254944|gb|EFU34912.1| polynucleotide adenylyltransferase [Escherichia coli MS 85-1] gi|323157782|gb|EFZ43885.1| poly(A) polymerase family protein [Escherichia coli EPECa14] gi|323176455|gb|EFZ62047.1| poly(A) polymerase family protein [Escherichia coli 1180] gi|331066596|gb|EGI38473.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA271] gi|331072186|gb|EGI43522.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli H591] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|187918562|ref|YP_001884125.1| poly(A) polymerase [Borrelia hermsii DAH] gi|119861410|gb|AAX17205.1| poly(A) polymerase [Borrelia hermsii DAH] Length = 405 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 101/392 (25%), Positives = 176/392 (44%), Gaps = 22/392 (5%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + D++ I + N + +VGGA+RD L+ D D T P +MR+F Sbjct: 6 NTKDIMKISKIFNNNNYEFFLVGGALRDLLLKKIPDDFDFTTNATPKEIMRLFPNN---- 61 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALY 128 I T + +GTI II KK F++TT R D+ + + + V FT+ D RRDFTIN++ Sbjct: 62 IQTGMKHGTISIIFNKKIFEVTTYRIDIDYENKRSPKEVKFTKSLNEDLQRRDFTINSIA 121 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + ++IDY G DL + IK IG+ + R ED LRILR RF + + ID + L Sbjct: 122 MNILNCEIIDYYNGKQDLNKKIIKCIGEPNKRFEEDALRILRAARFASTL-DFTIDQNTL 180 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 ++ K + +LS ERI +E KLLE KNP I ++ F+ F + + Sbjct: 181 ISMKYKKANILLLSKERINNEFIKLLEGKNPRKGIHYLQKINFFRYFF------NTEINK 234 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI---SFFNCNFN 304 ++ + L ++ S +D + + + + ++ + N Sbjct: 235 KLKNKITLLNRNKFYLKAIVIFTSKKDIRCLREKLELLRFSNKDIKLILFYKTIINEINT 294 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKP 361 + + +++ L + L I+ AL + + + ++L+D + K Sbjct: 295 LRIKKLHDVRILLSKATRENYKEILDIYKALKGRDNKLKFIMNKIKSKKLLNDPLSLK-- 352 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 + G+D+ + K +G IL + +E + Sbjct: 353 ELKINGNDIKDLKLTDNKNIGEILNYLLREVL 384 >gi|197263544|ref|ZP_03163618.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205357523|ref|ZP_02571164.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197241799|gb|EDY24419.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205331471|gb|EDZ18235.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 454 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 210 -MHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 269 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 AYYDAFALAMNDVLDEACRSLAIPK 353 >gi|296327658|ref|ZP_06870201.1| poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155248|gb|EFG96022.1| poly(A) polymerase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 451 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 100/442 (22%), Positives = 183/442 (41%), Gaps = 55/442 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LN+ K IVGGA+RD L+ L +D+D T + + + ++FS+ K T Sbjct: 14 IGILNKLNEYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYETLKKLFSEYNPK--ETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D + KV F D K D RRDFTINA+ Sbjct: 71 SFGVLRIRIDDIDYEIAKFREDNYEEKDGLKIIPEGKKVSFVDDIKNDLTRRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ ++D G D+ N+ I FIG+A RI+ED LR+LR FRF + + ++ + + Sbjct: 131 YNEVEGIVDLYNGQKDIENKVINFIGNAEQRIIEDPLRVLRAFRFMSRL-DFSLSENTIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K LK + E+I E +KLL +N N + M + G+ + I + + + Sbjct: 190 AIKKQKNLLKNIPEEKITMEFSKLLLGENIRNTLTLMKDTGVLELIIPEFKATYDFEQCN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSI---------------------- 278 +F D L++ L+ K + Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELKYSALLHDIAKPVVQTFDEKGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYG---------DKVMIAK 328 + + LP ++ + + K ++ + KL G + + Sbjct: 310 RDILTRLKLPVKLIETVTEIIKKHMVLYKDVTDKKFNKLLSEIGYDNLWRLIEHCIADNE 369 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 K + N H+ + + + + + G D+++ G G ++G I Sbjct: 370 SKNNEVVSTENDLHE---RLKRAVEKQMQITVNDLAVNGKDLIELGFI-GSEIGKIKEEL 425 Query: 389 KQEWINSSFQLSQEDLHHLLRK 410 ++++ Q +E++ +++ Sbjct: 426 LDKYLSEEVQNEKEEMLEYVKE 447 >gi|189468554|ref|ZP_03017339.1| hypothetical protein BACINT_04957 [Bacteroides intestinalis DSM 17393] gi|189436818|gb|EDV05803.1| hypothetical protein BACINT_04957 [Bacteroides intestinalis DSM 17393] Length = 476 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 168/456 (36%), Gaps = 57/456 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + F D I ++ + +VGG VRD + +DID+ + K Sbjct: 11 QHFSDDIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIEMAEALGKRL 70 Query: 68 YKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT ++ R + R + +V + D RRDFTIN Sbjct: 71 GRGAHVALFKNFGTAQVKYRGIEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTIN 130 Query: 126 ALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL + G+++D GG+ DL+ +TI+ D +D LR++R RF Sbjct: 131 ALAVCLNQSRFGELVDPFGGIEDLKEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID + + + I+S ERI E+NK++ + P + + G+ IF ++ + Sbjct: 190 IDDTTFESLCRNCGRISIISKERIADELNKIILSPIPSKGFIDLDRSGLLSLIFPELAAL 249 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS---------- 280 D +E K D+L LR+ L+ K + Sbjct: 250 QGVETRNGRAHKDNFYHTLEVLDNISRKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFH 309 Query: 281 ------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + +K LP E ++ + + ++ +++L + GD Sbjct: 310 NHNFIGEKMVPDIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G+++++ Sbjct: 370 DI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEERDRVRNFQPPVSGEEIMET 428 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + + P ++VG + K ++ E + Sbjct: 429 FNLEPCREVGALKSAIKDAILDGVIPNEYEAARAFM 464 >gi|218547599|ref|YP_002381390.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469] gi|218355140|emb|CAQ87747.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469] Length = 472 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 137/388 (35%), Gaps = 48/388 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLKEGIIRLIGNPETRYREDPVRMLRAVRFAAKLN 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 -MQISPETAEPIPRLAALLNDVPPARLFEESLKLLQAGYGYETYKLLREYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEAE--QVFE---------WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSAMERMIIQVLKNTDNRIHNGLRVNPAFLFAAMFWYPLMETAQRIAQESGL 346 Query: 288 -------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 I L + + + K + + Sbjct: 347 TWSDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 406 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDII 356 LAL + + + + + Sbjct: 407 AYDLLALRAEVERNSELQRLAKWWGEFQ 434 >gi|257784302|ref|YP_003179519.1| metal dependent phosphohydrolase [Atopobium parvulum DSM 20469] gi|257472809|gb|ACV50928.1| metal dependent phosphohydrolase [Atopobium parvulum DSM 20469] Length = 492 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 90/444 (20%), Positives = 165/444 (37%), Gaps = 58/444 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +L ++ IVGG VRD+L DIDI T + F V T Sbjct: 42 ALRVLEVLENAGFEAWIVGGWVRDALRGSFAHDIDITTLATWQQSKAAFVAAGIPVHETG 101 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I+YGT+ + + ++TT R D DGR V F + D RRDFTINA+ + Sbjct: 102 IAYGTVTAVVEQHPIEVTTYRCDGEYLDGRRPDSVQFVSCIEKDLARRDFTINAMAYHPK 161 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG DL I+ +G+ R ED LR+LR RF + +++ A I+ Sbjct: 162 RGLLDLYGGQEDLSAHVIRSVGEPKARFTEDALRMLRALRFACRF-SFSVEEKTHQALIE 220 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L ++SERI E+ +++E + +AI + ++ + A Sbjct: 221 CAPLLSQVASERIGLEVAQIVEGGHIAHAIKL--GFSVLAVAIPELLLLQNFDQRSPYHA 278 Query: 253 EQVFEWKID--------------SLLRFIVLISWQDKKSILS------------------ 280 V + +LR+ L+ K + S Sbjct: 279 YDVLKHTARVCSATEAFTVGCATPILRWAALLHDIAKPEMFSVDADGRGHFYGHPEKGAD 338 Query: 281 ----MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL-------------YGDK 323 + K+ +LP+ + + + + ++ ++ + L Y Sbjct: 339 VAKVLLKRLALPQRLINEICALVALHDYDVDVTTASLRHMVALLAEVSKSDGITLAYDLL 398 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDI---IHWKKPLFPLTGDDVV-KYGIPPGK 379 + + A+ Y + ++ I + ++G D++ I PG Sbjct: 399 TLKQADALAKAVPYRGYAVALERMFSLLKNEAKKGIAQRPQDLCISGADIMQALSITPGP 458 Query: 380 KVGNILVHCKQEWINSSFQLSQED 403 VG + ++ + + +E+ Sbjct: 459 IVGAYQHKLFEAYLIGTVENRREE 482 >gi|213052337|ref|ZP_03345215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425919|ref|ZP_03358669.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289826507|ref|ZP_06545600.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 437 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 193 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 251 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 252 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 311 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 312 AYYDAFALAMNDVLDEACRSLAIPK 336 >gi|289177756|gb|ADC85002.1| tRNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis BB-12] Length = 526 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 83/448 (18%), Positives = 161/448 (35%), Gaps = 66/448 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + + + +VGG VRD L++ D+D + P++ I + + Sbjct: 61 PEAIELGQMFADEGFELALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFW 120 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD+ D R +V + + D RRDFT+N Sbjct: 121 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVN 180 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG NDL R ++ D + +D LR++R RF A G +I+ Sbjct: 181 AMALTVPDLEFVDPFGGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIEP 239 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L Sbjct: 240 ETAEAITRMTDRIEIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRL- 298 Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM--- 281 ++ + + VF+ D +LR L+ K Sbjct: 299 EIDEHHRHKDVFDHTMIVVDRAVALETGPDGPVPAPDLVLRLAALMHDIGKPKTRRFEPG 358 Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIP---EIKKLFYL 319 K + + + + + Y+ Sbjct: 359 GKVSFHHHDAVGAKMTRKRLKALRFDHHVVEQVSDLVDLHLRFHGYVDEPWTDAAVRRYV 418 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + A+L + + ++ L L GD+ Sbjct: 419 KDAGPLYARLNRLTRADATTQNRRKALMFEHAMDEMEERVAKLKEQEDIDAIRPDLNGDE 478 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSS 396 ++ + GI PG VG H + +++ Sbjct: 479 IMAELGIAPGPLVGKAYRHMLEYRLDNG 506 >gi|198245984|ref|YP_002214141.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940500|gb|ACH77833.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 437 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 193 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 251 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 252 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 311 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 312 AYYDAFALAMNDVLDEACRSLAIPK 336 >gi|169830674|ref|YP_001716656.1| metal dependent phosphohydrolase [Candidatus Desulforudis audaxviator MP104C] gi|169637518|gb|ACA59024.1| metal dependent phosphohydrolase [Candidatus Desulforudis audaxviator MP104C] Length = 490 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 86/466 (18%), Positives = 165/466 (35%), Gaps = 67/466 (14%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + +L ++ ++ +VGGAVRD L+ ++ D+ T P V+ + ++ R K Sbjct: 1 MFSPGVRKVLDIITAAGREAYVVGGAVRDLLLGREPKEFDVCTDACPREVLTLAAENRIK 60 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINAL 127 ++G I I + +I T R++ R KV F + D RRDFT+NA+ Sbjct: 61 AFKKGAAFGVISWILDDEEIEIATFRTEFYGNDAHRPEKVEFVWALEDDLARRDFTVNAI 120 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 G ++D G DL ++ +GD R ED LR+ R RF A YG + + Sbjct: 121 AMRADGSIVDPFEGRPDLEAGVLRAVGDPEERFGEDALRMFRACRFVAEYG-FTLAPETK 179 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------E 233 A +A + LS ER+ EI + L A++ + M G+ Sbjct: 180 AAIPRALHRVAGLSVERVRDEIYRTLMAEHAAAGLELMRETGLLSADCRGRVNGFDTAVP 239 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKI--------DSLLRFIVLISW------------- 272 + ++ ++ + V+E + + LR+ L+ Sbjct: 240 VLPELARLAGVAQNPEYHQFDVWEHTLRVVSNVPAEPALRWAALLHDVAKGLPEVRGTNR 299 Query: 273 -----------QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY--- 318 + + + ++ P + + L + + Sbjct: 300 RGLPTDYGHARKGAQITGRIMERLRFPPAFARRVTWLVRNHMRFPELEERFVLRWLKSLA 359 Query: 319 --LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-----LSDIIH---WKKPLFP---- 364 + + ++ + LAL +L + + L +++ W+ P FP Sbjct: 360 PDFHNRQELLEAVGECLALRRADLLGGKVDSLAVLDGNQRLEEMVKDVMWRVPFFPEDLA 419 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +TG +V + G +V ++ L + K Sbjct: 420 ITGGEVAAL-VGRGPQVKQVMEDLVVRVQGGQLDNHPGVLKEAVEK 464 >gi|313202600|ref|YP_004041257.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Paludibacter propionicigenes WB4] gi|312441916|gb|ADQ78272.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Paludibacter propionicigenes WB4] Length = 478 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 185/476 (38%), Gaps = 67/476 (14%) Query: 1 MVSIVQHKWFHD---SDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATT--- 53 M S + + ++ I+ ++ + + ++GG VRD + +DID+ Sbjct: 1 MFSKPDKDFMQEFLQDNIFKIISEAADEQQQECYVIGGFVRDIFLKRPSKDIDVVVVGSG 60 Query: 54 -ILPDRVM-RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR 111 L ++V ++ K + ++GT ++ + R + +V Sbjct: 61 IALAEKVALKLGKKAKL---TVFKNFGTAQVKLNDLEVEFVGARKESYQRDSRKPIVEDG 117 Query: 112 DWKADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 + D RRDFTINAL D+ G+++D GG+ DL+N I+ + +D LR+ Sbjct: 118 TLEDDQNRRDFTINALAICLNKDRYGELVDPFGGIEDLKNFVIRTPLNPDITFSDDPLRM 177 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 +R RF A G I+++ A ++ K+ ++I+S ERI E+NK++ ++ P + + Sbjct: 178 MRGIRFSAQLGFF-IETNTFDAIVRNKERIEIISKERIADELNKIMASRKPSVGFILLEK 236 Query: 228 GGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKK 276 G+ + IF +V + + I + F + L LR+ L+ K Sbjct: 237 TGLLELIFPEVLALKGAETKDGIGHKDNFYHTLAVLDGLCEMTDNLWLRWAALLHDIGKP 296 Query: 277 SILSMAKKF----------------------SLP-REIRYFLISFFNCNFNQKTLSIPE- 312 + LP E ++ + + LS E Sbjct: 297 RTKRFDSRLGWTFHNHNFIGEKMIPEIFRKMKLPTNEKMKYVQKMVSLHMRPIVLSEEEI 356 Query: 313 ----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWK 359 I++L + GD + + + A + + F L+ + + + Sbjct: 357 TDSAIRRLLFEAGDDI-DDLMTLCEADITSKNPEKVKRFRSNFQLVRNKLKEIEEKDRVR 415 Query: 360 KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P++G ++++ + +P VG+I + K ++ + H + ++ Sbjct: 416 NFQPPISGQEIMETFNLPASAIVGDIKMRIKDAILDGIIPNEYKAAHAYMLQIAKE 471 >gi|293403213|ref|ZP_06647310.1| pcnB [Escherichia coli FVEC1412] gi|298378747|ref|ZP_06988631.1| poly(A) polymerase [Escherichia coli FVEC1302] gi|300900821|ref|ZP_07118963.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1] gi|331661517|ref|ZP_08362441.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA143] gi|291430128|gb|EFF03142.1| pcnB [Escherichia coli FVEC1412] gi|298281081|gb|EFI22582.1| poly(A) polymerase [Escherichia coli FVEC1302] gi|300355698|gb|EFJ71568.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1] gi|331061432|gb|EGI33395.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia coli TA143] Length = 454 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYNLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|194446356|ref|YP_002039420.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195873676|ref|ZP_02698162.2| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205360723|ref|ZP_02685928.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194405019|gb|ACF65241.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632749|gb|EDX51203.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205347459|gb|EDZ34090.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 437 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 193 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 251 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 252 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 311 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 312 AYYDAFALAMNDVLDEACRSLAIPK 336 >gi|238911251|ref|ZP_04655088.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 437 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 193 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 251 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 252 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 311 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 312 AYYDAFALAMNDVLDEACRSLAIPK 336 >gi|282877716|ref|ZP_06286531.1| HD domain protein [Prevotella buccalis ATCC 35310] gi|281300288|gb|EFA92642.1| HD domain protein [Prevotella buccalis ATCC 35310] Length = 478 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 78/436 (17%), Positives = 161/436 (36%), Gaps = 57/436 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP--TSISYGTIKIICR 85 + +VGG VRD + DID+ +V + K ++GT ++ R Sbjct: 31 ECYVVGGYVRDLFLERPSNDIDVVVVGSGIKVAEALKQRLGKQAHLSVFRNFGTAQVKYR 90 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + + R + VV + D RRDFTINA+ G+++D G Sbjct: 91 GQEVEFVGARKESYNHDSRKPVVEDGTLEDDQNRRDFTINAMAVCLNEARFGELVDPFDG 150 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL + I+ D +D LR++R RF I+ + A + ++ +KI+S Sbjct: 151 LLDLEDGIIRTPLDPDITFSDDPLRMMRCVRFATQLKFF-IEDETFEALQRNRERIKIVS 209 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI E+NK++ +P V ++ G+ + I + + + + + F ++ Sbjct: 210 GERIADELNKIMMTDHPSRGFVELHRCGLLELILPEFTLMDIVETRNGRAHKNNFYHTLE 269 Query: 262 S-----------LLRFIVLISWQDKKSILS----------------------MAKKFSLP 288 LR+ L K + ++ P Sbjct: 270 VVDNICQHTDNLWLRWAALFHDIGKPRSKRWDVQAGWTFHNHNYIGSKMIPGIFRRLKFP 329 Query: 289 REIR-YFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 + + ++ + + ++ E +++L GD + + + A + Sbjct: 330 MDSKMKYVQKMVDMHMRPIAIADEEVTDSAVRRLMNDAGDDI-DGLMTLCEADITSKNAQ 388 Query: 343 QDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392 + F+ L L + + + + G+++++ + P ++VG + K Sbjct: 389 RKQRFLDNFRMVREKLDDLKERDYKRLLQPCIDGNEIMEMFHLQPSREVGTLKQTLKDAV 448 Query: 393 INSSFQLSQEDLHHLL 408 +++ +E L LL Sbjct: 449 LDNKVPNEREPLMALL 464 >gi|161612545|ref|YP_001586510.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361909|gb|ABX65677.1| hypothetical protein SPAB_00235 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|323228577|gb|EGA12706.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] Length = 472 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 18/254 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA 252 + +E Sbjct: 287 TRYFTENGDSAMER 300 >gi|283779836|ref|YP_003370591.1| tRNA adenylyltransferase [Pirellula staleyi DSM 6068] gi|283438289|gb|ADB16731.1| tRNA adenylyltransferase [Pirellula staleyi DSM 6068] Length = 419 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 104/410 (25%), Positives = 178/410 (43%), Gaps = 16/410 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+++ L ++ GG VRD L+ +D D+AT+ LPD V ++F R + Sbjct: 13 AISVVRQLRAAGYQALWAGGCVRDQLLGQRPKDYDVATSALPDEVRKLFGHKR--TLAIG 70 Query: 75 ISYGTIKIICRKK--YFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 ++G I ++ ++ D+ T R+D +DGR+ + + D+ RRDFTIN L+ D Sbjct: 71 AAFGVITVLGPREAGQLDVATFRTDATYSDGRHPDAITFSTPEHDAQRRDFTINGLFFDP 130 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +VIDYVGG DL R ++ I D RI ED LR+LR RF A G +I++ L A Sbjct: 131 IEERVIDYVGGEADLAARVVRAIRDPAERIEEDKLRMLRAVRFAARLG-FSIEAQTLAAI 189 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL--SQ 248 + L+++S+ERI +E+ K+L + + + + E+ ++ E++ L + Sbjct: 190 EQRADQLQVVSAERIAAEMEKILVHNSRAQGLALLRQARLLPEVLPELAEVTDFTLLARE 249 Query: 249 VIEAEQ-VFEWKIDSLLRF--IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 + EQ F I +LLR +A ++ L + IS Q Sbjct: 250 LSLLEQPSFAMAIAALLRHTAAARSPLTAAALADQIAARWRLSNHVAEG-ISLALRQLPQ 308 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP- 364 ++ + I +L LA + + ++ P Sbjct: 309 LQIATELPWPQLQRMLVQPRIGELLGLLAAVERGAGERSPQTDYCRAKLALPAEQLNPPP 368 Query: 365 -LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 LTG D+ + G+ PG IL + + + + + KL A Sbjct: 369 LLTGSDLKRAGLSPGPMFREILEQVRDQQLLGQLHTLGDAIE-YAEKLAA 417 >gi|320200334|gb|EFW74920.1| Poly(A) polymerase [Escherichia coli EC4100B] Length = 454 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPAI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|193067681|ref|ZP_03048648.1| poly(A) polymerase [Escherichia coli E110019] gi|192959093|gb|EDV89529.1| poly(A) polymerase [Escherichia coli E110019] Length = 454 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + + +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLEKAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|323171311|gb|EFZ56959.1| poly(A) polymerase family protein [Escherichia coli LT-68] Length = 454 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRNFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|326621884|gb|EGE28229.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 454 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 269 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 AYYDAFALAMNDVLDEACRSLAIPK 353 >gi|269966964|ref|ZP_06181036.1| Poly(A) polymerase [Vibrio alginolyticus 40B] gi|269828447|gb|EEZ82709.1| Poly(A) polymerase [Vibrio alginolyticus 40B] Length = 455 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 20/270 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 31 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFR 89 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDW 113 R + I+ + ++ T R +G + Sbjct: 90 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKSISQQSKEGMLLRDNVYGTI 145 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR R Sbjct: 146 DEDAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVR 205 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + +I+ D L + S R++ E KLL++ + L + +F+ Sbjct: 206 FAVKL-DFDIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQ 264 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ++F + + S EQ+ + +DS Sbjct: 265 QLFPTIAAHFTEDYSS--HTEQMLDLVLDS 292 >gi|313765090|gb|EFS36454.1| tRNA adenylyltransferase [Propionibacterium acnes HL013PA1] gi|313815662|gb|EFS53376.1| tRNA adenylyltransferase [Propionibacterium acnes HL059PA1] gi|314916152|gb|EFS79983.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA4] gi|314917414|gb|EFS81245.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA1] gi|314921754|gb|EFS85585.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA3] gi|314930978|gb|EFS94809.1| tRNA adenylyltransferase [Propionibacterium acnes HL067PA1] gi|314955350|gb|EFS99755.1| tRNA adenylyltransferase [Propionibacterium acnes HL027PA1] gi|314959432|gb|EFT03534.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA1] gi|315099405|gb|EFT71381.1| tRNA adenylyltransferase [Propionibacterium acnes HL059PA2] gi|315102383|gb|EFT74359.1| tRNA adenylyltransferase [Propionibacterium acnes HL046PA1] gi|327454192|gb|EGF00847.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA3] gi|327456249|gb|EGF02904.1| tRNA adenylyltransferase [Propionibacterium acnes HL083PA2] gi|328755949|gb|EGF69565.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA1] gi|328758980|gb|EGF72596.1| tRNA adenylyltransferase [Propionibacterium acnes HL025PA2] Length = 507 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 83/450 (18%), Positives = 156/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ K D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ +SL++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALSLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 351 Query: 282 -------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ GI PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMAILGIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499 >gi|269120810|ref|YP_003308987.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sebaldella termitidis ATCC 33386] gi|268614688|gb|ACZ09056.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sebaldella termitidis ATCC 33386] Length = 583 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 188/437 (43%), Gaps = 45/437 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++D+ IL +LNK + IVGG+VRD L+ +S +D D T I + +F K Sbjct: 6 NNDVEFILDILNKNG-EGYIVGGSVRDILLGVSPKDYDFTTNIAYSTLKELFKDYNPK-- 62 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYA 129 +G + I +++I R D+ I +GR+ + V F + D RRDFTINA+ Sbjct: 63 EIGKHFGILMIKINGIHYEIAKFRKDIGILNGRHPESVKFVDEIAEDLKRRDFTINAMAY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ +ID G +D++N+ I+F+GD RI ED LRILR RF + G +++++ A Sbjct: 123 SRKNGLIDLYNGSSDIKNKLIRFVGDPGLRIKEDALRILRAVRFVSALG-FDLETETKKA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 +K K LK +S ERI E +K+L + ++ M GI + I +++ + + Sbjct: 182 ILKNKLQLKKISKERIREEFSKILLSDYVDKGLLLMKELGILEIIIPEIEMLYEFNQNNP 241 Query: 250 IEAEQVFEWKI--------DSLLRFIVLISWQDKKSILSMAK------------------ 283 + VF + D L R L K + S+ K Sbjct: 242 HHHKDVFAHTVSVVKNTQKDLLTRITALFHDIGKPNTHSIDKNGISHYYGHENNSAEIAS 301 Query: 284 ----KFSLPRE-IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + P + IR + N + IKK G + + F A + Sbjct: 302 AALRRLKFPNDFIRDVDVLIRNHMIIFEKPGAKAIKKFICKVGIENLDKIFDHFYADMSS 361 Query: 339 NLTHQDTCFILQV-------LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 D I + + + +K + G+D++ I K++ I ++ Sbjct: 362 KKPPVDYSLIDSLKSKVDEIIDKNENIEKQDLEINGNDMLALKIQQ-KQISKIKNEIYEK 420 Query: 392 WINSSFQLSQEDLHHLL 408 ++ + + +++D+ + + Sbjct: 421 VLDGNLENNKKDIVNYI 437 >gi|156975713|ref|YP_001446620.1| nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi ATCC BAA-1116] gi|156527307|gb|ABU72393.1| hypothetical protein VIBHAR_03448 [Vibrio harveyi ATCC BAA-1116] Length = 462 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 20/270 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 31 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFR 89 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDW 113 R + I+ + ++ T R +G + Sbjct: 90 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKNVSQQSKEGMLLRDNVYGTI 145 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFTIN++Y + + DY G+ DL +R ++ IGD R ED +R+LR R Sbjct: 146 DEDAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLRAIR 205 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + +I+ D + L+ + S R++ E K+L++ + L + +F+ Sbjct: 206 FAVKL-DFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNLFQ 264 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ++F + E + EQ+ + +DS Sbjct: 265 QLFPAIAEHFTEDYES--HTEQMLDLVLDS 292 >gi|294790211|ref|ZP_06755369.1| tRNA adenylyltransferase [Scardovia inopinata F0304] gi|294458108|gb|EFG26461.1| tRNA adenylyltransferase [Scardovia inopinata F0304] Length = 468 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 86/461 (18%), Positives = 170/461 (36%), Gaps = 68/461 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + + + +VGG VRD ++ S D+D T+ PD+ + Sbjct: 6 AVELGHIFAEHGYELALVGGPVRDMILGRSAHDLDFCTSATPDQFEPLLKAWGDGFWDMG 65 Query: 75 ISYGTIKIICR-----KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY 128 +GT+ + R + +ITT R+D + R +V + + D RRDFTIN++ Sbjct: 66 RKFGTLGTMKRLPQGEEVSIEITTYRTDAYQPNSRKPQVDYGSSLQGDLSRRDFTINSMA 125 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +D GG++DL R ++ A +D LR++R RF A + I D Sbjct: 126 VRLPSLDFVDPFGGMDDLSKRLLRTPVAAEQSFSDDPLRMMRAVRFVAQL-DFRIALDTA 184 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-- 245 A ++I+S+ER+ E+ KLL +++P + + G+ + ++ + +D+ Sbjct: 185 EALSSMVDRIQIVSAERVRDELTKLLLSQHPRKGLESLVESGLADYVVPELPALHMDRDP 244 Query: 246 --------------LSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------- 281 L + I E + D +LR L+ K Sbjct: 245 NHHHKDVFDHTMKVLERAIALETSPDGPVPAPDLVLRLAALMHDIGKPRTRRFEPGGKVS 304 Query: 282 ------------AKKF---SLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYG 321 K+ + + + S + + S +++ G Sbjct: 305 FYHHDLVGAKMTRKRLTSLRFDKHVVEDVSSLVELHLRFHGYVDEPWSDAAVRRYVKDSG 364 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVV 371 + +L Q + Q + ++ ++ L GD ++ Sbjct: 365 H--LYHRLNRLTRADATTQNRQKSLMFEQAMDELESRVNELKKKEDFEAIRPDLNGDQIM 422 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K G+ PG +VG+ H +++ + Q++ L+K Sbjct: 423 KILGLAPGPQVGHAYKHMLDFRLDNG-PVDQDEAVAELQKW 462 >gi|313835239|gb|EFS72953.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA2] gi|314929206|gb|EFS93037.1| tRNA adenylyltransferase [Propionibacterium acnes HL044PA1] gi|314970839|gb|EFT14937.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA3] gi|328905733|gb|EGG25509.1| tRNA adenylyltransferase [Propionibacterium sp. P08] Length = 499 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 83/454 (18%), Positives = 153/454 (33%), Gaps = 59/454 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 41 HIPLVAELGEAFAQTGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQRTHAT 100 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 ++GTI ++TT R+D D R ++V+ + D +RRDFT+NA+ Sbjct: 101 WDIGRAFGTIGAQINDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMAL 160 Query: 130 DQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + D GL D+ ++ +D LR++R RF + G + D Sbjct: 161 HAATRTFSDPYAGLADIVAGVLRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTGDVRA 219 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--- 245 A ++I+S+ER+ E++K L +P + + GI + ++ + L++ Sbjct: 220 AMTDMASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTGIADYVLPELPALRLERDEH 279 Query: 246 -------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDK----------------- 275 L Q I+ E+ D R L+ K Sbjct: 280 HHHKDVYEHSLTVLDQSIDLEKRRGHNPDLTGRLAALMHDIGKPPTRRFEPGGKVSFHHH 339 Query: 276 -----KSILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVM 325 K K + P ++ + + + + +++ GD+ Sbjct: 340 DVVGAKMARKRLKALAYPSQVVKDVAKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ-- 397 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YG 374 + +L I + + D+ L G ++ G Sbjct: 398 LERLHILTRSDCTTRNRRKAERLEFAYDDLEARIADLTAKEELAAIRPDLDGQQIMATLG 457 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 I G +VG ++ E LL Sbjct: 458 IKSGPEVGKAYKFLLNLRLDEGPHTPDEAKSALL 491 >gi|300770908|ref|ZP_07080785.1| polyA polymerase [Sphingobacterium spiritivorum ATCC 33861] gi|300762181|gb|EFK59000.1| polyA polymerase [Sphingobacterium spiritivorum ATCC 33861] Length = 472 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 87/456 (19%), Positives = 174/456 (38%), Gaps = 59/456 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRV 59 M +QH F LI L + + ++GG VRD +M + D+DI Sbjct: 1 MSDNLQHPIFS---LIK--DLAQQTSTECYVIGGYVRDRIMGRPFKNDVDIVVIGSGIEF 55 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 + + S+GT ++ + R + +V + D R Sbjct: 56 ADKLGEKLNTKVTVYKSFGTAMLVYDGLNVEFVGARKESYRSDSRKPIVENGTLEDDQNR 115 Query: 120 RDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RDFTINA+ G ++D G+ D+ R I+ +D LR++R RF + Sbjct: 116 RDFTINAMAYSLNAHNYGALLDPFNGIEDIAQRIIRTPLAPQETFSDDPLRMMRAIRFAS 175 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G K ID + A ++ + I+S ERI E+NK++ ++ P ++++ G+ + IF Sbjct: 176 QLGFK-IDIHTIEAIYNTRERISIISKERITDELNKIILSEKPSVGFKYLFDTGLLELIF 234 Query: 236 LDVQEI----------SLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + ++ D +E + V E+ D LR+ ++ K + KK Sbjct: 235 PAMYQLHGVDVVEGKGHKDNFYHTLEVLDNVAEYSDDLWLRWAAIMHDIAKPATKRFDKK 294 Query: 285 ----------------------FSLPREIRYF------LISFFNCNFNQKTLSIPEIKKL 316 LP + L+ + ++ +++L Sbjct: 295 LGWTFHGHEDKGARMVPKLFAELKLPLHDKMKFVQKLVLLHLRPIVLAKDIVTDSAVRRL 354 Query: 317 FYLYGDKV----MIAKLKIFLALHYNNLTHQDTCFI----LQVLSDIIHWKKPLFPLTGD 368 + G+ + ++ + Y +++ + L+ + + + P+TG+ Sbjct: 355 LFEAGNDIDALMLLCHADVTTKNEYKKKKYRENFELVKQKLKDVEERDQIRNWQPPITGE 414 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 D++ + + PG++VG I ++ + S+E Sbjct: 415 DIMTVFNLGPGREVGKIKNAIREAILEGDITNSKEQ 450 >gi|197249173|ref|YP_002145185.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200386557|ref|ZP_03213169.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|197212876|gb|ACH50273.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199603655|gb|EDZ02200.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 454 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV E +++ F + + + +A++ L Sbjct: 269 TRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 AYYDAFALAMNDVLDEACRSLAIPK 353 >gi|172087758|ref|YP_205549.2| poly(A) polymerase I [Vibrio fischeri ES114] gi|171902346|gb|AAW86661.2| poly(A) polymerase I [Vibrio fischeri ES114] Length = 475 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 19/245 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L L+ + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 47 ISRKDLSD-NALKVLYRLSNAGYDAYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFR 105 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRD 112 R + I+ + ++ T R D G + Sbjct: 106 NCRL----IGRRFRLAHILFGRDVIEVATFRGHHKEDNEKKNISAQSDEGMLLRDNVYGT 161 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFT+NA+Y + + DY G+ DL+N I+ IGD R ED +R+LR Sbjct: 162 VEEDAERRDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLRAV 221 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A + I + L+ + + R++ E KLL+ N LN + + +F Sbjct: 222 RFAAKL-DMTICDKTAAPIAELSPLLRDIPAARLFEESLKLLQTGNGLNTYWMLRDFNLF 280 Query: 232 KEIFL 236 +++F Sbjct: 281 QQLFP 285 >gi|330470813|ref|YP_004408556.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Verrucosispora maris AB-18-032] gi|328813784|gb|AEB47956.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Verrucosispora maris AB-18-032] Length = 486 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 89/452 (19%), Positives = 163/452 (36%), Gaps = 59/452 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ +D+D T PD+ + I + T Sbjct: 33 ADELGRRFAAAGHELHLVGGSVRDALLGRLGEDLDFCTDAHPDQTLGIVRGWAEAIWETG 92 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI +ITT R++ R V + + D RRDFTINA+ Sbjct: 93 REFGTIGCQRDGLRLEITTFRAESYDQVSRNPVVEYGTNLTEDLRRRDFTINAMAVSLPD 152 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GGL DL + ++ G +D LR+LR RF A + D A + Sbjct: 153 HRFTDPYGGLADLAAKVVRTPGTPAESFGDDPLRMLRAARFAAQL-RFAVHPDVYAAMTR 211 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +++ERI E KLL A +P+ + + + G+ + ++ + L ++ + + Sbjct: 212 MAADLDRITAERIRDEFTKLLCAADPITGLRLLVDTGLAERFLPELTGLKL-EIDEHAQH 270 Query: 253 EQVFEWK--------------IDSLLRFIVLISWQDKKSILSMA---------------- 282 + V+E D +LR L+ K + ++ Sbjct: 271 KDVYEHTLTVVRNAISYEQDGPDFILRMAALMHDVGKPATKAVGSDGRVSFHHHEVVGAR 330 Query: 283 ------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 K P++I + + + E L L Sbjct: 331 LTKARMKALRYPKDITAKVTALVALHLRFYGYGRGEWTDSAVRRYVTDAGDLLSRLHKLT 390 Query: 337 YNNLTHQDTCFILQVLSDIIHWK-------------KPLFPLTGDDVVK-YGIPPGKKVG 382 ++ T ++ Q+ +D + + L G+ +++ G+PPG VG Sbjct: 391 RSDCTTRNRRKAAQLAADYDALEERIARIAAEEDLARVRPDLDGNAIMELLGVPPGPIVG 450 Query: 383 NILVHCKQEWINSSFQLSQE----DLHHLLRK 410 + K + L ++ +L R+ Sbjct: 451 QAWKYLKDLRLERG-PLDRDTAEAELLRWARE 481 >gi|227358020|ref|ZP_03842362.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906] gi|227161755|gb|EEI46787.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906] Length = 507 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 31/309 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F Sbjct: 72 ISRKDISD-NALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFR 130 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS---DLITDGRY----------AKVVFTR 111 +R + I+ + ++ T R D T R + Sbjct: 131 NSRL----VGRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFG 186 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRDFT+N+LY V DYVGGL DL++ TI+ IG R ED +R+LR Sbjct: 187 SIEEDAIRRDFTLNSLYYGVDDFAVRDYVGGLADLKSGTIRLIGSPETRYREDPVRMLRA 246 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + + I + + L+ + S R++ E KLL+ + M + + Sbjct: 247 IRFASKL-DMRIAPETAEPISQLAPLLRNIPSARLFEESLKLLQTGHGYKTYRLMRHFQL 305 Query: 231 FKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSIL 279 + +F V +Q +E EQV E +++ F ++ + + Sbjct: 306 LEPLFPLVASRITEQQDTPMERMIEQVLKNTDYRISKEMRVNPAFLFAAMLWYPLVEHAE 365 Query: 280 SMAKKFSLP 288 +A++ L Sbjct: 366 KLAQESGLS 374 >gi|159040572|ref|YP_001539825.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Salinispora arenicola CNS-205] gi|157919407|gb|ABW00835.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Salinispora arenicola CNS-205] Length = 485 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 91/447 (20%), Positives = 160/447 (35%), Gaps = 54/447 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ D+D T PD+ ++I V T Sbjct: 32 ADELGRRFVAAGHELHLVGGSVRDALLGRLGDDLDFCTDAHPDQTLQIVRGWAEAVWETG 91 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI + +ITT R+++ R V + D RRDFT+NA+ Sbjct: 92 REFGTIGVQRDGLRLEITTFRAEVYDQVSRNPVVQYGTSLTEDLKRRDFTVNAMAVSVPD 151 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GGL DL + ++ +D LR+LR RF A + D A + Sbjct: 152 HRFTDPHGGLADLATKVVRTPSAPEESFRDDPLRMLRAARFAAQL-RFAVHPDVRAAMTR 210 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +++ERI E KLL +P+ + + + G+ + ++ + L ++ + + Sbjct: 211 MATDLDRITAERIRDEFTKLLCGADPVTGLRLLVDSGLAERFLPELTGLKL-EIDEHAQH 269 Query: 253 EQVFEWKI--------------DSLLRFIVLISWQDKKSILSMA---------------- 282 + V+E + D +LR L+ K + ++ Sbjct: 270 KDVYEHTLTVVRNAVSYEEDGCDFVLRMAALMHDVGKPATKAVGPDGRVSFHHHEVVGAR 329 Query: 283 ------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 K PRE + + + E L L Sbjct: 330 LTKARMKALRFPREAIAKVTALVALHLRFYGYGRGEWTDSAVRRYVADAGDLLPRLHKLT 389 Query: 337 YNNLTHQDTCFILQVLSDIIHWK-------------KPLFPLTGDDVVK-YGIPPGKKVG 382 ++ T ++ Q+ +D + + L G+ ++K G+PPG VG Sbjct: 390 RSDCTTRNRRKAAQLAADYDALEERIARIAAEEDLARVRPDLDGNAIMKLLGVPPGPVVG 449 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLR 409 H K+ + E LLR Sbjct: 450 LAWKHLKELRLERGPLGRDEAEAELLR 476 >gi|53714925|ref|YP_100917.1| tRNA nucleotidyltransferase [Bacteroides fragilis YCH46] gi|265766778|ref|ZP_06094607.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_16] gi|52217790|dbj|BAD50383.1| tRNA nucleotidyltransferase [Bacteroides fragilis YCH46] gi|263253155|gb|EEZ24631.1| tRNA adenylyltransferase [Bacteroides sp. 2_1_16] gi|301164367|emb|CBW23925.1| putative polyA polymerase [Bacteroides fragilis 638R] Length = 481 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 88/466 (18%), Positives = 181/466 (38%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGQISETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ C + R + +V + Sbjct: 61 AMAEALGKRLGRGAHVSVFKNFGTAQVKCHGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL + G+++D GG+NDL+ + I+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKGRFGELVDPFGGMNDLKEKIIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF ID D + + ++ ++I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLNFY-IDDDTFESLCRNRERIEIISRERIADELNKIMLSPIPSKGFIDLDRSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS--------- 271 + IF ++ + D +E D+L LR+ L+ Sbjct: 240 ELIFPELVALQGVETRNGRAHKDNFYHTLEVLDNISRVTDNLWLRWSALLHDIAKPVTKR 299 Query: 272 WQDK-------------KSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 W+ K K I ++ +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ + + P ++VG++ K ++ E + + Sbjct: 419 PVSGEEIMEVFNLGPCRQVGSLKSAIKDAILDGVIPNEYEAAYAFM 464 >gi|320197403|gb|EFW72017.1| Poly(A) polymerase [Escherichia coli WV_060327] Length = 454 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISQETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|333011530|gb|EGK30944.1| poly(A) polymerase family protein [Shigella flexneri K-272] Length = 454 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL- 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 209 DMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|227327661|ref|ZP_03831685.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 452 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 82/408 (20%), Positives = 140/408 (34%), Gaps = 52/408 (12%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + D + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F Sbjct: 20 TISRSDISD-NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLF 78 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLR---------------SDLITDGRYAKVV 108 R + I+ + ++ T R S G + Sbjct: 79 RNCRL----VGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEVKNSSQQAQSGMLLRDN 134 Query: 109 FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 + D+ RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+ Sbjct: 135 IFGSVEEDAQRRDFSINSLYYSISDFSVRDYTDGLNDLRQGIIRMIGDPETRYREDPVRM 194 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 LR RF A + + + L + + R++ E KLL++ + Sbjct: 195 LRAVRFAAKLN-MTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCE 253 Query: 228 GGIFKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKK 276 +F+ +F + +E QV + +++ F ++ + + Sbjct: 254 YQLFQPLFPLLSRYFTPNGDSTLERMVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPLVE 313 Query: 277 SILSMAKKFSL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 +A++ L I + S + +T K Sbjct: 314 HAQKLAQESGLAYFDAFSLAMNDVLDEQCRSLAIPKRITSLVRDIWQLQTRLSRRQGKRA 373 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 Y + L L HQ+ + Q + P Sbjct: 374 YKLMEHPKFRAAYDLLCLRAEIENHQELLRLAQWWGEFQVAAPPRQQN 421 >gi|195941525|ref|ZP_03086907.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi 80a] Length = 410 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 171/394 (43%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLTKDLERRDFTINAIAMDIFNFNIIDCYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ ++VI+ + + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKVIKKIALLDKNKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I ++ FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL + I + ++ L ++ L Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTL 402 >gi|194737669|ref|YP_002113212.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300656|ref|ZP_02660022.2| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194713171|gb|ACF92392.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197292033|gb|EDY31383.1| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322616013|gb|EFY12930.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620797|gb|EFY17657.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623852|gb|EFY20689.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627300|gb|EFY24091.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630607|gb|EFY27371.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638174|gb|EFY34875.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640660|gb|EFY37311.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645556|gb|EFY42083.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648150|gb|EFY44617.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657101|gb|EFY53384.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657472|gb|EFY53744.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663791|gb|EFY59991.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666624|gb|EFY62802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672218|gb|EFY68330.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676471|gb|EFY72542.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679437|gb|EFY75482.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686235|gb|EFY82219.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195111|gb|EFZ80294.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197562|gb|EFZ82697.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201168|gb|EFZ86237.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209564|gb|EFZ94497.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212185|gb|EFZ97009.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216489|gb|EGA01215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220633|gb|EGA05081.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225882|gb|EGA10102.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323236810|gb|EGA20886.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239690|gb|EGA23737.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242263|gb|EGA26292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249925|gb|EGA33821.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252354|gb|EGA36205.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255638|gb|EGA39391.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262926|gb|EGA46476.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265411|gb|EGA48907.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271802|gb|EGA55220.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 437 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 18/254 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 193 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 251 Query: 239 QEISLDQLSQVIEA 252 + +E Sbjct: 252 TRYFTENGDSAMER 265 >gi|146310347|ref|YP_001175421.1| poly(A) polymerase I [Enterobacter sp. 638] gi|145317223|gb|ABP59370.1| poly(A) polymerase [Enterobacter sp. 638] Length = 437 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 75/385 (19%), Positives = 156/385 (40%), Gaps = 36/385 (9%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F Sbjct: 10 TISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTSATPEQVRKLF 68 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI-------------TDGRYAKVVFT 110 R + ++ + ++ T R +G + Sbjct: 69 RNCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEAGAPADRTTSQRGQNGMLLRDNIF 124 Query: 111 RDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D+ RRDFTIN+LY V D+VGG+ DL+ I+ IG+ R ED +R+LR Sbjct: 125 GSIEEDAQRRDFTINSLYYSVADFSVRDFVGGVQDLKEGVIRLIGNPETRYREDPVRMLR 184 Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF A I ++ + + + R++ E+ KLL+A + Sbjct: 185 AVRFAAKLN-MQISAETAEPIPRLATLINDVPPARLFEEVLKLLQAGYGYETYKLLRENS 243 Query: 230 IFKEIFLDV-----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI 278 +F+ +F + E + Q+ + + + +++ F + + ++ Sbjct: 244 LFQPLFPSIVRYFTESGDSPMERMIAQVLKNTDTRLHNDMRVNPAFLFAAMFWYPLLETA 303 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLA 334 +A++ L + L + + +TL+IP+ + + + ++ + K Sbjct: 304 QKIAQESGLAYYDAFALAANDVLDEACRTLAIPKRITTLVRDIWQLQLRMSRRQGKRAWK 363 Query: 335 LHYNNLTHQDTCFILQVLSDIIHWK 359 L + + +L + ++I + K Sbjct: 364 LMEHP-KFRAAYDLLALRAEIENNK 387 >gi|228471468|ref|ZP_04056253.1| polyA polymerase family protein [Porphyromonas uenonis 60-3] gi|228306736|gb|EEK15881.1| polyA polymerase family protein [Porphyromonas uenonis 60-3] Length = 501 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 90/442 (20%), Positives = 169/442 (38%), Gaps = 55/442 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIPTSISYGTIKIICR 85 ++ +VGG VRD + DIDI + + ++ + ++GT ++ + Sbjct: 46 ETYVVGGWVRDLFLQRPSSDIDIVCVGSGIALAKAVAREIGPKCQVHVFANFGTAQLRYK 105 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + R + +V + D RRDFTINA+ G+++D G Sbjct: 106 GVEVEFVGARRESYQRDSRKPIVEDGTLEDDQERRDFTINAMAISLNERTYGELVDPFYG 165 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL++ I+ D +D LR++R RF + G ID A +K ++ +KI+S Sbjct: 166 LEDLQDYMIRTPVDPQVTFDDDPLRMMRAVRFASQLGFF-IDDAVFDAIVKLRERIKIVS 224 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS----------LDQLSQVIE 251 +ERI E+NK++ + P + M G+ + I +VQ + D L+ + Sbjct: 225 AERIIVELNKIMLSPRPSVGLSLMEQTGLLELILPEVQLLRGTETVVGVGHKDNLAHTYQ 284 Query: 252 AEQVFEWKIDSL-LRFIVLIS----------------------WQDKKSILSMAKKFSLP 288 K D+L LR+ L+ + K + M ++ LP Sbjct: 285 VVDQLAAKSDNLYLRWAALLHDIAKPKTKRWDAQQGWTFHNHNYIGAKMVPRMFRRLKLP 344 Query: 289 RE------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT- 341 + + + + + ++ I++L + GD + + + N Sbjct: 345 LDSHMQYVAKLVDLHMRPSSLVDEGVTDSAIRRLLFDAGDDIEDLMTLVESDVTSKNPKR 404 Query: 342 -------HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWI 393 +Q LQ + + + P+ G ++++ GIPP + VG + K + Sbjct: 405 VQQVLDNYQVIRRKLQEVEEKDRIRNFAPPIDGAEIMRLFGIPPSQIVGTLKERIKNAIL 464 Query: 394 NSSFQLSQEDLHHLLRKLIASS 415 + LL K A Sbjct: 465 DGEIPNEYGPARELLLKEAAER 486 >gi|225352359|ref|ZP_03743382.1| hypothetical protein BIFPSEUDO_03976 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156866|gb|EEG70235.1| hypothetical protein BIFPSEUDO_03976 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 487 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 90/468 (19%), Positives = 178/468 (38%), Gaps = 67/468 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVI 71 + I + + + +VGG VRD L++ D+D T+ P++ I + R Sbjct: 21 PEAIELGRMFAAEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFW 80 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R++ ++TT RSD D R +V + + D RRDFT+N Sbjct: 81 DMGRKFGTLGAMRRREDGTEVQVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 140 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + +D GG NDL ++ D +D LR++R RF A G + I+ Sbjct: 141 AMALRVPELEFVDPFGGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IEP 199 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A ++I+S+ER+ E+ K+L + P I + + G+ +F ++ + L Sbjct: 200 ETAEALTDMVDRIEIVSAERVRDELVKMLLSDRPRAGIEALVDSGLADIVFPEIPALQL- 258 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-----KKSILSMAKKFS---LPREIRYFL- 295 ++ + + VFE + + R + L + D L +A P+ R+ Sbjct: 259 EIDEHHRHKDVFEHTMIVIDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFESG 318 Query: 296 --ISFFNCNFNQKTLSIPEIKKLFYLY--------------------------------- 320 +SF + + ++ +K L + + Sbjct: 319 GKVSFHHHDAVGAKMTRKRLKALHFDHHMVEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 378 Query: 321 -GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + + ++ + L L GD+ Sbjct: 379 KDAGPLYERLNRLTRADATTQNKRKAMVFSSAMDEMEQRVRDLKEKEDFDAIRPDLNGDE 438 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++ GI PG VG H + +++ + ++ L + Q Sbjct: 439 IMQLLGIDPGPLVGKAYKHMLEYRLDNG-PVERDVAVAELNRWYEEQQ 485 >gi|309811302|ref|ZP_07705089.1| tRNA adenylyltransferase [Dermacoccus sp. Ellin185] gi|308434609|gb|EFP58454.1| tRNA adenylyltransferase [Dermacoccus sp. Ellin185] Length = 509 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 84/465 (18%), Positives = 160/465 (34%), Gaps = 68/465 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + L + +VGG VRD+ ++ + D+D T+ PD RI + Sbjct: 42 LRQLGELFAGAGHEIALVGGPVRDAFLSRTSPDLDFTTSARPDDTERIVAGWADATWDLG 101 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 ++GTI + +ITT R+D + R V F D +RRDFT+NA+ Sbjct: 102 RAFGTIGVRKGGVQVEITTYRADAYDRETRKPVVEFGDSLDDDLVRRDFTVNAMALRLPD 161 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +D GGL DL ++ D +D LR++R RF + G ++ + A + Sbjct: 162 LTFVDPYGGLADLAAGVLRTPTDPEVSFGDDPLRMMRAARFSSQLG-FDVAPEAFRAMRE 220 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++++S+ER+ E+ KLL + P + + GI + + ++ ++L ++ + Sbjct: 221 MAASIEMISAERVRDELVKLLMSPTPRRGLELLVESGIAEHVLPELPALAL-EIDEHHRH 279 Query: 253 EQVFEWK---------------------------IDSLLRFIVLISWQDKKSILSM---- 281 + V+E D +LR L+ K Sbjct: 280 KDVYEHSLIVLEQAMALEGPREVPGVEAPTEVEGPDLVLRLAALLHDIGKPDTRRFEPGG 339 Query: 282 ------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLY 320 + +E + + E Y+ Sbjct: 340 GVSFHHHELVGAKMTRKRLRALRFDKETIKQVSRLVELHLRFHGYGNGEWTDSAVRRYVT 399 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----------LTGDDV 370 ++ +L + + + D+ + L L G+++ Sbjct: 400 DAGPLLPRLHLLTRADSTTRNKRKAARLQATYDDLEARIERLQAEEELAAVRPELDGNEI 459 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 GI PG +G H ++ + ++ LR+ A Sbjct: 460 QAVLGIKPGPVLGRAYKHLLAVRLDEGV-IGKDAASERLREWWAQ 503 >gi|60682903|ref|YP_213047.1| putative polyA polymerase [Bacteroides fragilis NCTC 9343] gi|253566030|ref|ZP_04843484.1| tRNA nucleotidyltransferase [Bacteroides sp. 3_2_5] gi|60494337|emb|CAH09133.1| putative polyA polymerase [Bacteroides fragilis NCTC 9343] gi|251945134|gb|EES85572.1| tRNA nucleotidyltransferase [Bacteroides sp. 3_2_5] Length = 481 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 88/466 (18%), Positives = 181/466 (38%), Gaps = 60/466 (12%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+ + Q + F + I + + +VGG VRD + +DID+ Sbjct: 1 MIELTQEELKQHFSEPIFGQISETADALGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGI 60 Query: 58 RVMRIFSKTRYKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 + K + ++GT ++ C + R + +V + Sbjct: 61 AMAEALGKRLGRGAHVSVFKNFGTAQVKCHGTEVEFVGARKESYQRDSRKPIVEDGTLED 120 Query: 116 DSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL + G+++D GG+NDL+ + I+ D +D LR++R Sbjct: 121 DQNRRDFTINALAVCLNKGRFGELVDPFGGMNDLKEKIIRTPLDPDITFSDDPLRMMRCI 180 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF ID D + + ++ ++I+S ERI E+NK++ + P + + G+ Sbjct: 181 RFATQLNFY-IDDDTFESLCRNRERIEIISRERIADELNKIMLSPIPSKGFIDLDRSGLL 239 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS--------- 271 + IF ++ + D +E D+L LR+ L+ Sbjct: 240 ELIFPELVALQGVETRNGRAHKDNFYHTLEVLDNISRVTDNLWLRWSALLHDIAKPVTKR 299 Query: 272 WQDK-------------KSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----E 312 W+ K K I ++ +K LP E ++ + + ++ Sbjct: 300 WEPKAGWTFHNHNFIGEKMIPNIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSA 359 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLF 363 +++L + GD + + + A + + F+ L+ L + + Sbjct: 360 VRRLLFEAGDDI-DDLMTLCEADITSKNMERKQRFLNNFQLVRQKLKDLEEKDRVRNFQP 418 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ + + P ++VG++ K ++ E + + Sbjct: 419 PVSGEEIMEVFNLGPCRQVGSLKSAIKDAILDGVIPNEYEAAYAFM 464 >gi|309787190|ref|ZP_07681802.1| poly(A) polymerase family protein [Shigella dysenteriae 1617] gi|81239683|gb|ABB60393.1| poly(A) polymerase I [Shigella dysenteriae Sd197] gi|308924768|gb|EFP70263.1| poly(A) polymerase family protein [Shigella dysenteriae 1617] Length = 454 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E +QV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIKQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|332878045|ref|ZP_08445775.1| HDIG domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684007|gb|EGJ56874.1| HDIG domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 493 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 175/458 (38%), Gaps = 62/458 (13%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 ++ ++ K FH I + ++ + +VGG VRD + QDIDI T + Sbjct: 9 LIHLLDKKIFHQ-----ISEVADEQGVECYVVGGYVRDLFLERPSQDIDIVTVGSGIALA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + + + ++GT ++ + ++ R + + VV + D Sbjct: 64 KALAGRLGRGAHLSVFSNFGTAQVKFKGMEVELVGARKESYSHDSRKPVVEDGTLEDDQN 123 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL ++ G+++D G+ D+ +R ++ D +D LR++R RF Sbjct: 124 RRDFTINALAVCLNRERFGELVDPFDGVWDMEDRLVRTPLDPDITFSDDPLRMMRCVRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 ID + A + ++ +KI+S ERI E+NK++ P V + G+ I Sbjct: 184 TQLNFY-IDEETFEALERNRERIKIISRERIADELNKIMMTPTPSKGFVELARCGLLPLI 242 Query: 235 FLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMA- 282 F ++ + D +E D+L LR+ L+ K Sbjct: 243 FPELAAMEGVEKVNGRAHKDNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKPRTKRFDP 302 Query: 283 ---------------------KKFSLP-REIRYFLISFFNCNFNQKTLSIPE-----IKK 315 +K LP E ++ + ++ E +++ Sbjct: 303 VAGWTFHNHNFIGAKMVPDIFRKMKLPMNEKMKYVQKMVELHMRPIVIADEEVTDSAVRR 362 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L + GD + + + A + + F+ L L + + P++ Sbjct: 363 LLFEAGDDIE-DLMTLCEADITSKNAQRKQRFLDNFKLVRRKLVDLEERDRVRNFQPPVS 421 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 G++++ +G+ P ++VG++ K ++ + Sbjct: 422 GEEIMAVFGLSPCREVGSLKSAIKDAILDGVVPNEHDA 459 >gi|309801955|ref|ZP_07696069.1| tRNA adenylyltransferase [Bifidobacterium dentium JCVIHMP022] gi|308221403|gb|EFO77701.1| tRNA adenylyltransferase [Bifidobacterium dentium JCVIHMP022] Length = 476 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 85/450 (18%), Positives = 164/450 (36%), Gaps = 70/450 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVI 71 + I + + + + +VGG VRD L++ D+D T+ P++ I + R Sbjct: 13 PEAIELGRMFAEEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFW 72 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R++ ++TT RSD D R +V + + D RRDFT+N Sbjct: 73 DMGRKFGTLGAMRRREDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 132 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG NDL ++ + +D LR++R RF A G + I+ Sbjct: 133 AMALRVPDLEFVDPFGGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGFR-IEP 191 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + + I+S+ER+ E+ KLL + P I + + G+ +F ++ + L Sbjct: 192 ETAEALSDMVERIDIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQL- 250 Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM--- 281 ++ + + VFE D LR L+ K Sbjct: 251 EIDEHHRHKDVFEHTMIVVDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEPG 310 Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLF 317 K + + N + ++ + +++ Sbjct: 311 GKVSFHHHDAVGAKMTRKRLKALRFDHHMIEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 370 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367 G + +L + + ++ + L L G Sbjct: 371 KDAGP--LYERLNRLTRADATTQNRRKAMIFSSAMDEMEQRVRDLKKKEDFDAIRPDLNG 428 Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSS 396 D++++ GI PG VG H + +++ Sbjct: 429 DEIMQLLGIEPGPMVGRAYKHMLEYRLDNG 458 >gi|332827244|gb|EGK00017.1| hypothetical protein HMPREF9455_03661 [Dysgonomonas gadei ATCC BAA-286] Length = 482 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 85/436 (19%), Positives = 167/436 (38%), Gaps = 57/436 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP--TSISYGTIKIICR 85 + +GG VRD ++ +DIDI T + + ++T K ++GT +I + Sbjct: 35 ECYAIGGYVRDIFLHRPSKDIDIVTVGKGIELAQAVARTLGKKAHLSVFKNFGTAQIKYK 94 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGG 141 + R + VV + D RRDFTINAL D+ G+++D G Sbjct: 95 DTEIEFVGARRESYQRDSRKPVVEDGTLEDDQNRRDFTINALAVCLNKDRFGELLDPFNG 154 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L D+ + I+ D +D LR++R RF + G NI+ A + K + I+S Sbjct: 155 LKDMEDLIIRTPLDPDITFSDDPLRMMRAIRFSSQLG-FNIEPGTFDAITRNKDRIGIIS 213 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI- 260 ERI E+NK++ + P + + G+ IF ++ + + + + + F + Sbjct: 214 GERIIDELNKIVLSPKPSVGFLQLDQTGLLAIIFPELVALKGAETKEGVGHKDNFYHTLV 273 Query: 261 ----------DSLLRFIVLISWQDKKSILSMAKKF----------------------SLP 288 D LR+ ++ K + KK LP Sbjct: 274 VLDNISKKTDDLWLRWSAILHDIAKPATKRFDKKLGWTFHNHNFIGEKMIPGIFRRMKLP 333 Query: 289 -REIRYFLISFFNCNFNQKTLSIPEI-----KKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 E ++ + + L +I ++L + GD + + + A + Sbjct: 334 LNEKMKYVQKMVTLHMRPQVLVDEDITDSAVRRLLFEAGDDIE-DLMTLCEADITSKNPE 392 Query: 343 QDTCFILQV---------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392 + ++ + + H + P+ G+++++ +G+ PG +VG + K Sbjct: 393 KVRRYLRNFELVRHKLKDIEEKDHVRNFQPPIGGEEIMEIFGLAPGVEVGRLKSSVKDAI 452 Query: 393 INSSFQLSQEDLHHLL 408 ++ + + L Sbjct: 453 LDGVISNEYDAAYEYL 468 >gi|298345833|ref|YP_003718520.1| tRNA adenylyltransferase [Mobiluncus curtisii ATCC 43063] gi|315654406|ref|ZP_07907314.1| polyA polymerase family protein [Mobiluncus curtisii ATCC 51333] gi|298235894|gb|ADI67026.1| tRNA adenylyltransferase [Mobiluncus curtisii ATCC 43063] gi|315491441|gb|EFU81058.1| polyA polymerase family protein [Mobiluncus curtisii ATCC 51333] Length = 509 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 88/439 (20%), Positives = 160/439 (36%), Gaps = 58/439 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + + + +VGG VRD+L+ ++ D+D+ T+ PD + V Sbjct: 43 VVPLGEVFAAAGYEIALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVG 102 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +YGT+ F+ITT RSD D R V F + D RRDFT+N++ Sbjct: 103 RNYGTLGARKGDDVFEITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPT 162 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D GGLNDL ++ D +D LRI+R RF A E ++D + + A Sbjct: 163 LELVDPTGGLNDLAAGILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMET 221 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------- 241 ++ L I+S ER+ +E+++L+ A P + M + +++ ++ ++ Sbjct: 222 MRERLTIVSPERVQAELSRLMIASAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHK 281 Query: 242 -----SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------------ 281 SL L Q I E + D +LR ++ K + Sbjct: 282 DVWEHSLTVLDQAIAQETGPDGPVPAPDLVLRLAAILHDIGKPATRRFEAGGVVTFHQHD 341 Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAK 328 K + + + + Y+ ++ + Sbjct: 342 VVGARITRARLKALKYDKATIRDVSRLVALHQRFHGYGEQVWTDSAVRRYVTDAGPLLER 401 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVK-YGIPP 377 L + + D+ K L L GD++++ GIP Sbjct: 402 LHRLTRADCTTRNVKKAQRLAAAYDDLEARIKELKAQEELDAVRPELNGDEIMEILGIPA 461 Query: 378 GKKVGNILVHCKQEWINSS 396 G +VG + Sbjct: 462 GPEVGKAYKFMLAYRMEHG 480 >gi|226362873|ref|YP_002780653.1| tRNA nucleotidyltransferase [Rhodococcus opacus B4] gi|226241360|dbj|BAH51708.1| tRNA nucleotidyltransferase [Rhodococcus opacus B4] Length = 483 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 87/468 (18%), Positives = 175/468 (37%), Gaps = 65/468 (13%) Query: 2 VSIVQHKWFHDSDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 ++ +L +L+ L + + +VGG+VRD+++ D+D T P+ Sbjct: 12 TRLLAGAAMTLRELSEVLTPLGEKFASAGHELYLVGGSVRDAILGRLGTDLDFTTDARPE 71 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKAD 116 +V ++ S T I +GTI + +ITT R+D R V F + D Sbjct: 72 QVQKLLSGWVDNQWDTGIEFGTISAAKAGQQIEITTYRADAYDRVSRNPVVQFGTKLEDD 131 Query: 117 SLRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 +RRDFT+NA+ AD +D + G++ L + + +D LR+LR R Sbjct: 132 LVRRDFTVNAMAVRIGADGSQDFVDPLNGMDALLAGMLDTPSAPENSFNDDPLRMLRAAR 191 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + G + A ++ +++ER+ +E++KL+ + P++ + M G+ Sbjct: 192 FVSQLG-FTLHERVHAAIADMAPQIERITAERVRAELDKLILGEFPIDGMNVMCETGLAD 250 Query: 233 EIFLDVQEISLD-------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-- 277 + +V ++ L+ L+ + +A + + D +LR+ L+ K Sbjct: 251 FVLPEVPQMKLEIDEHHQHKDVYWHSLTVLKQAVDLEDGDPDLVLRWAALLHDIGKPDTK 310 Query: 278 --------------------ILSMAKKFSLPREIRYFLISFFNCNFNQK----------- 306 + + +++ + + Sbjct: 311 RNEPGGGVSFHHHEVVGAKMVRKRMRALKYSKQMVDDVSQLVFLHLRFHGYGKGQWTDSA 370 Query: 307 -----TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 T + P + +L L + AL T+ D + +++ + Sbjct: 371 VRRYVTDAGPLLPRLHKLVRADCTTRNKRRAAALQ---ATYDDIEERIARIAEQEDLARV 427 Query: 362 LFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 L G+ +++ GIP G VG + K+ ++ E LL Sbjct: 428 RPDLDGNAIMELLGIPAGPDVGKAWKYLKELRLDRGPLSRDEAEAELL 475 >gi|269961935|ref|ZP_06176290.1| Poly(A) polymerase [Vibrio harveyi 1DA3] gi|269833258|gb|EEZ87362.1| Poly(A) polymerase [Vibrio harveyi 1DA3] Length = 455 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 20/270 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 31 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFR 89 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDW 113 R + I+ + ++ T R +G + Sbjct: 90 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKNVSQQSKEGMLLRDNVYGTI 145 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFTIN++Y + + DY G+ DL +R ++ IGD R ED +R+LR R Sbjct: 146 DEDAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLRAVR 205 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + +I+ D + L+ + S R++ E K+L++ + L + +F+ Sbjct: 206 FAVKL-DFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNLFQ 264 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ++F + E + EQ+ + +DS Sbjct: 265 QLFPVIAEHFTEDYES--HTEQMLDLVLDS 292 >gi|333021774|gb|EGK41023.1| poly(A) polymerase family protein [Shigella flexneri K-227] Length = 435 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 15 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 71 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 72 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 130 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 131 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL- 189 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 190 DMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 249 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 250 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 309 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 310 TYHDAFALAMNDVLDEACRSLAIPK 334 >gi|254777641|ref|ZP_05219157.1| PcnA [Mycobacterium avium subsp. avium ATCC 25291] Length = 480 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 86/452 (19%), Positives = 171/452 (37%), Gaps = 55/452 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H L + S + + +VGG+VRD+L+ D+D T P++V +I + + Sbjct: 21 HAPMLRELGSAFDAAGHQLYLVGGSVRDALLGRLSPDLDFTTDARPEQVQQILRRWADNL 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY- 128 T I +GT+ + + +ITT R+D R +V F + D +RRDFT NA+ Sbjct: 81 WDTGIEFGTVGVGKGDRRLEITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTANAMAV 140 Query: 129 ---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 D G+ +D +GGL LR R + +D LR+LR RF + G + Sbjct: 141 RITPDGPGEFLDPLGGLAALRQRVLDTPATPEESFGDDPLRMLRAARFVSQLG-FTVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISL 243 A + L +S+ER+ +E++KL+ +P+ I + + G+ + + ++ ++++ Sbjct: 200 VREAIERMAPQLARISAERVAAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAI 259 Query: 244 DQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------- 277 D+ Q + +A + + D +LR+ L+ K + Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPNGGVSFHHH 319 Query: 278 -------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIA 327 + + +++ + + + Y+ ++ Sbjct: 320 EVVGAKMVRKRLRALRYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIP 376 +L + + + + + L G+ +++ GIP Sbjct: 380 RLHKLVRADCTTRNKRRAARLQAAYDRLEARIAELAAQEDLARVRPDLDGNQIMEILGIP 439 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G +VG K+ + E LL Sbjct: 440 AGPQVGEAWRFLKELRLERGPLDPDEATAELL 471 >gi|317509432|ref|ZP_07967050.1| tRNA adenylyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316252261|gb|EFV11713.1| tRNA adenylyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 487 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 94/459 (20%), Positives = 179/459 (38%), Gaps = 57/459 (12%) Query: 7 HKWFHDSDLI--NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 H H D + + +VGG+VRD+++ D+D T P++ ++ Sbjct: 25 HTALHAHDALFGALAGRFVAAGHALYLVGGSVRDAVLGRLGDDLDFTTDAKPEQTQKLLR 84 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFT 123 ++ I++GT+ + +ITT R+D R V F D + D +RRDF Sbjct: 85 GWADELWDVGIAFGTVGAVKDGHKLEITTYRTDSYDQRSRNPVVAFGTDLRGDLVRRDFR 144 Query: 124 INALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 +NA+ G+ +D +GGL+D+ I +D LR+LR RF A G Sbjct: 145 MNAMAVSLTEQGCGEFVDPLGGLDDVLAGKIDTPDSPEISFGDDPLRMLRAARFAAQLGF 204 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ++A K ++ +++ERI +E+ KLL ++ + + H+ + G+ + + ++ Sbjct: 205 TW-SPRVVLAVEKMAGEIQRITAERIGAELEKLLVGEHAVEGLEHLVDSGLAEYVLPELP 263 Query: 240 EISLD-------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 ++ L L+ + A + D +LR+ L+ K + + Sbjct: 264 QLQLAVDAAHHHKDVYRHSLAVLGNAMALEPGDPDPVLRWAALLHDIGKPATRRFEPGGA 323 Query: 287 LP---------REIRYFLISF-FNCNFNQKTLSIPEIKKLFYLYGDKVMIA--------- 327 + + R L + F +F + + + FY YGD+ Sbjct: 324 VSFHHHEVVGAKLARKRLRALTFPKHFVEDVSKLVFLHMRFYGYGDQAWTDSAVRRYAVD 383 Query: 328 ---KLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVV 371 L L + T ++ Q+ +S+ K L G+ ++ Sbjct: 384 AGELLPKLHLLVRADCTTRNQRRSRQLASAYDRFEERIAKISEAEDLAKVRPDLDGNAIM 443 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + GI PG++VG + K+ + + E LL Sbjct: 444 EILGIGPGREVGEAWKYLKELRLEQGPLEADEAERKLLD 482 >gi|326336252|ref|ZP_08202424.1| polyA polymerase family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691761|gb|EGD33728.1| polyA polymerase family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 476 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 93/458 (20%), Positives = 170/458 (37%), Gaps = 70/458 (15%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSKT--RYKVIPTS 74 I + ++ K +VGG VRD L+ + +DIDI T + + I Sbjct: 15 ISKIADQNNQKCFVVGGFVRDLLLKRGIAKDIDIVTLGSGIELAEKVAAQLPNNPKISVF 74 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----AD 130 ++GT I + R + + +V D RRDFTIN L D Sbjct: 75 KNFGTAMIKTDSIDIEFVGARKESYREDSRKPLVENGTLADDQNRRDFTINTLAISLNQD 134 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G+++D GG+NDL+N+ I+ + + +D LR+LR RF + I+ L A Sbjct: 135 SFGELVDPFGGINDLQNQIIRTPLEPNITYSDDPLRMLRAIRFATQLNFQ-IEEKSLQAI 193 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 K+ LKI+S+ERI E+NK+L + P +Y G+ I ++ + Sbjct: 194 ADNKERLKIISNERIAEELNKILASNKPSIGFKLLYETGLLSLILPELVALQGVDEKEGQ 253 Query: 242 -SLDQLSQVIEAEQVFEWKI-DSLLRFIVLISWQDKKSILSMAK---------------- 283 D +E D LR+ L+ K K Sbjct: 254 RHKDNFWHTLEVVDNISLNTNDLWLRWAALLHDIGKAPTKRFDKKIGWTFHGHEFVGGKM 313 Query: 284 ------KFSLPREIRYFLISF------FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 + LP+ + + Q ++ +++L + GD + Sbjct: 314 VVKIFQRLRLPQNEKMKFVQKIVTMSSRPIIIAQDIVTDSAVRRLLFDAGDD-----FEA 368 Query: 332 FLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVKY-GIPP 377 + L ++T ++ + + + H + P+TG++++ G+ P Sbjct: 369 LMTLCEADITTKNPQRYKKYHQNFQIVRQKVVEVEEKDHIRNFQPPITGEEIMALFGLKP 428 Query: 378 GKKVGNILVHCKQEWINSSFQLSQED----LHHLLRKL 411 ++VG + K+ + S E+ + +K+ Sbjct: 429 SREVGQLKEVIKEAILEGIIGNSYEEAYPFMLEKAKKM 466 >gi|218249512|ref|YP_002375206.1| polynucleotide adenylyltransferase [Borrelia burgdorferi ZS7] gi|226321404|ref|ZP_03796931.1| polynucleotide adenylyltransferase [Borrelia burgdorferi Bol26] gi|218164700|gb|ACK74761.1| polynucleotide adenylyltransferase [Borrelia burgdorferi ZS7] gi|226233200|gb|EEH31952.1| polynucleotide adenylyltransferase [Borrelia burgdorferi Bol26] Length = 410 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 104/394 (26%), Positives = 172/394 (43%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLTKDLERRDFTINAIAMDIFNFNIIDCYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL +TI+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKTIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ ++VI+ + + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKVIKKIALLDKNKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I ++ FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL + I + ++ L ++ L Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTL 402 >gi|270284638|ref|ZP_05966443.2| tRNA adenylyltransferase [Bifidobacterium gallicum DSM 20093] gi|270276581|gb|EFA22435.1| tRNA adenylyltransferase [Bifidobacterium gallicum DSM 20093] Length = 512 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 88/459 (19%), Positives = 165/459 (35%), Gaps = 66/459 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVI 71 + I + L + + +VGG VRD L+ D+D T+ P++ I + Sbjct: 23 PEAIELGRLFAQEGYELALVGGPVRDLLLGRPSHDLDFCTSATPEQFEPILRRYGKDGFW 82 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD+ D R +V + + D RRDFT+N Sbjct: 83 DMGRKFGTLGALRRRDDGTEVQMEVTTYRSDVYDPDSRKPEVNYGDSLEGDLSRRDFTVN 142 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL + ++ D +D LR++R RF A G +I Sbjct: 143 AMALRVPDLEFVDPFGGASDLHKQVLRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FHIAP 201 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + I+S+ER+ E+ KLL ++ P + G+ +F ++ + L Sbjct: 202 ETAEAMTDMVDRIDIVSAERVRDELTKLLLSERPRLGLEAFVESGLANIVFPEIPALQL- 260 Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSMAKK 284 ++ + + VFE D LR L+ K Sbjct: 261 EIDEHHRHKDVFEHTMIVVDRAVALETGPDGPVPGPDLTLRLAALVHDIGKPKTRRFEPG 320 Query: 285 FSLP---------REIRYFLISF-FNCNFNQKTLSIPEIKKLFYLYGDKVMIA------- 327 + + R L + F+ + + ++ F+ Y D+ Sbjct: 321 GKVSFHHHDAVGAKLTRKRLRALRFDHHLVDDVSELVDLHLRFHGYVDEPWTDSAVRRYV 380 Query: 328 --------KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDD 369 +L + + ++ L GD+ Sbjct: 381 KDAGHLYHRLNRLTRADATTQNRRKAAMFAHAMDEMEARVTRLKEQEDIDAIRPDLNGDE 440 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 ++ + G+ PGK VG H + +++ + L L Sbjct: 441 IMAELGLQPGKMVGLARKHMLEYRLDNGPVDHETALAEL 479 >gi|160889203|ref|ZP_02070206.1| hypothetical protein BACUNI_01624 [Bacteroides uniformis ATCC 8492] gi|156861210|gb|EDO54641.1| hypothetical protein BACUNI_01624 [Bacteroides uniformis ATCC 8492] Length = 476 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 87/456 (19%), Positives = 174/456 (38%), Gaps = 57/456 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++F D I ++ + +VGG VRD + +DID+ + K Sbjct: 11 QYFSDDIFKRISETADELGLECYVVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGKRL 70 Query: 68 YKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT ++ + R + T +V + D RRDFTIN Sbjct: 71 GRGAHVSVFKNFGTAQLKYYGTEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTIN 130 Query: 126 ALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL G+++D GG+ DL+ +TI+ D +D LR++R RF G Sbjct: 131 ALAVCLNRVRYGELVDPFGGIGDLKEKTIRAPLDPDITFSDDPLRMMRCVRFATQLGFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID + + + ++ + I+S ERI E+NK++ + P + + G+ + IF ++ + Sbjct: 190 IDDETFDSLERNRERISIISKERIADELNKIILSPIPSKGFIELDRCGLLELIFPELVRL 249 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS---------- 280 D +E K D+L LR+ L+ K + Sbjct: 250 QGVETRNGRAHKDNFYHTLEVLDNISKKTDNLWLRWAALLHDIAKPATKRWEPRAGWTFH 309 Query: 281 ------------MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + +K LP E ++ + + ++ +++L + GD Sbjct: 310 NHNFIGEKMIPDIFRKMKLPMNEKMKYVQKMVSLHMRPIVIADDVVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G++++K Sbjct: 370 DI-DDLMTLCEADITSKNMERKKRFLNNFQLVRQKLKDLEERDRIRNFQPPVSGEEIMKT 428 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G+ P ++VG + K ++ E + Sbjct: 429 FGLSPCQQVGALKSAIKDAILDGIIPNEYEAARAFM 464 >gi|229495960|ref|ZP_04389684.1| polyA polymerase family protein [Porphyromonas endodontalis ATCC 35406] gi|229317052|gb|EEN82961.1| polyA polymerase family protein [Porphyromonas endodontalis ATCC 35406] Length = 475 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 85/448 (18%), Positives = 172/448 (38%), Gaps = 56/448 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP--TSI 75 I ++ ++ +VGG VRD L++ + DID+ + + R F+K + Sbjct: 19 ISEAADELGVEAYVVGGYVRDLLLHRTTGDIDVVSVGRGIDLARAFAKKWGRGAHLSVFA 78 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131 ++GT ++ + R + +V + D RRDFTINA+ ++ Sbjct: 79 NFGTAQVKKGGIEVEFVGARRESYRRDSRKPIVEDGTLEEDQERRDFTINAMALCLNKER 138 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GL DL + ++ D +D LR+LR RF + G +D + A Sbjct: 139 FGELVDPFYGLEDLEDCLLRTPLDPDVTFSDDPLRMLRGIRFASQLGFF-LDEETFEAIE 197 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241 + + ++I+S+ERI E+NK++ + P + + G+ I +V + Sbjct: 198 RNAERIQIVSAERIIVELNKIMLSPKPSIGLELLEKTGLMALILPEVLALKGAETRDGIG 257 Query: 242 SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSIL--------------------- 279 D L+ + K D+L LR+ L+ K Sbjct: 258 HKDNLTHTYKVVDNLAAKSDNLYLRWAALLHDVAKPQTKRFDRALGWTFHNHNYIGAKMV 317 Query: 280 -SMAKKFSLPREIR-YFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKVMIAKLKIF 332 M ++ LP + ++ + L +++L + GD + L + Sbjct: 318 PKMFRRLKLPLDASMKYVAKMVELHMRPAALVDEGVTDSAVRRLLFEAGDDIDDLMLLVE 377 Query: 333 --------LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGN 383 + + L + + + P++G+++++ G+PP + VG Sbjct: 378 ADITSKNPQKVRRYLDNYVVVRRKLHEIEEKDRIRNFQPPISGEEIMELFGLPPSRPVGT 437 Query: 384 ILVHCKQEWINSSFQLSQEDL-HHLLRK 410 + K ++ + +LL+K Sbjct: 438 LKEAIKNAILDGVIPNEYDAAYDYLLKK 465 >gi|41410430|ref|NP_963266.1| PcnA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399264|gb|AAS06882.1| PcnA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 480 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 86/452 (19%), Positives = 171/452 (37%), Gaps = 55/452 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H L + S + + +VGG+VRD+L+ D+D T P++V +I + + Sbjct: 21 HAPMLRELGSAFDAAGHQLYLVGGSVRDALLGRLSPDLDFTTDARPEQVQQILRRWADNL 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY- 128 T I +GT+ + + +ITT R+D R +V F + D +RRDFT NA+ Sbjct: 81 WDTGIEFGTVGVGKGDRRLEITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTANAMAV 140 Query: 129 ---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 D G+ +D +GGL LR R + +D LR+LR RF + G + Sbjct: 141 RITPDGPGEFLDPLGGLAALRQRVLDTPATPEESFGDDPLRMLRAARFVSQLG-FTVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISL 243 A + L +S+ER+ +E++KL+ +P+ I + + G+ + + ++ ++++ Sbjct: 200 VREAIERMAPQLARISAERVAAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAI 259 Query: 244 DQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------- 277 D+ Q + +A + + D +LR+ L+ K + Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPNGGVSFHHH 319 Query: 278 -------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIA 327 + + +++ + + + Y+ ++ Sbjct: 320 EVVGAKMVRKRLRALKYSKQMIDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIP 376 +L + + + + + L G+ +++ GIP Sbjct: 380 RLHKLVRADCTTRNKRRAARLHASYDRLEARIAELAAQEDLARVRPDLDGNQIMEILGIP 439 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G +VG K+ + E LL Sbjct: 440 AGPQVGEAWRFLKELRLERGPLDPDEATAELL 471 >gi|220914656|ref|YP_002489965.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arthrobacter chlorophenolicus A6] gi|219861534|gb|ACL41876.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arthrobacter chlorophenolicus A6] Length = 502 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 91/465 (19%), Positives = 160/465 (34%), Gaps = 64/465 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D ++ + + +VGG VRD + + D+D T PD+ + + K Sbjct: 18 DPVVLELGQRFVDAGHELSLVGGPVRDLFLGRTSPDLDFTTDATPDQTVALIKKWADNFW 77 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++GTI + +ITT R++ D R V F D LRRDFTINA+ Sbjct: 78 EIGRAFGTIGMRKAGFQIEITTYRAEAYDPDSRKPVVAFGSSLTDDLLRRDFTINAMALK 137 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++D GG+ DL + G +D LR++R RF + G ++ D A Sbjct: 138 LPTMELVDPFGGVRDLHASVLATPGSPEASFSDDPLRMMRAARFASQLG-VSVHDDVRKA 196 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS-- 247 + + I+S+ERI E+ KL+ P + + + G+ + + +V + L+ Sbjct: 197 MTGMAERITIISAERIRDELVKLVCGARPRVGVDLLVDTGLAEFVLPEVSALRLESDEHH 256 Query: 248 ----------QVIEAEQVFE-------WKIDSLLRFIVLISWQDKKSILSMA-------- 282 QV+E E D +LRF L+ K + Sbjct: 257 RHKDVYQHSLQVLEQAAALETDADGPVPGPDFVLRFAALMHDVGKPATRRFEQGGAVSFR 316 Query: 283 --------------KKFSLPREIRYFLISFFNCNFNQK----------------TLSIPE 312 K + + + T + P+ Sbjct: 317 HHDMVGAKLTTKRMKTLRFDNDTIKSVARLVELHMRFYGYGDAGWSDSAVRRYVTDAGPQ 376 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 +++L L V + L + + D + L + + L G ++ Sbjct: 377 LERLHRLTRSDVTTRNQRKADRLSFA---YDDLEERIAALREQESLEAVRPDLDGAQIMS 433 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ PG VG E + + + LLR + Sbjct: 434 LLGLKPGPVVGRAYKFLLNERMEHGPLAADDAEARLLRWWAEQPE 478 >gi|110804198|ref|YP_687718.1| poly(A) polymerase I [Shigella flexneri 5 str. 8401] gi|110613746|gb|ABF02413.1| poly(A) polymerase I [Shigella flexneri 5 str. 8401] Length = 454 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLS 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|270263017|ref|ZP_06191287.1| poly(A) polymerase [Serratia odorifera 4Rx13] gi|270042705|gb|EFA15799.1| poly(A) polymerase [Serratia odorifera 4Rx13] Length = 492 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 76/407 (18%), Positives = 143/407 (35%), Gaps = 54/407 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R Sbjct: 70 SENALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL--- 126 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117 + ++ + ++ T R +G + + D+ Sbjct: 127 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQTPESDKNSSQQAQNGMLLRDNIFGSIEEDA 185 Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTIN+LY + DYV G+ DL+ I+ IGD R ED +R+LR RF A Sbjct: 186 QRRDFTINSLYYGVADFTLRDYVDGMRDLQQGVIRLIGDPETRYREDPVRMLRAVRFAAK 245 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +I + + L + R++ E KLL+A + + +F+ +F Sbjct: 246 L-DMSISDETAEPIPRLASLLHEIPPARLFEESLKLLQAGYGYPTYLKLCEYQLFQPLFP 304 Query: 237 DVQEISLDQLSQVIEA-----------EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285 + +E + +++ F ++ + + +A++ Sbjct: 305 QIARHFTPSHDTPMERILVQVLKNTDYRLQNDMRVNPAFLFAAMLWYPLLEHAQKLAQES 364 Query: 286 SL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 L I + + + + K + + Sbjct: 365 GLAYYDAFALAMNDVLDEQCRSLAIPKRITTLVRDIWQLQLRLSRRQGKRAHKLMEHPKF 424 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDII----HWKKPLFPLTGDD 369 LAL +Q+ + + + +K + GDD Sbjct: 425 RAAYDLLALRAEVEENQEMLRLTEWWGEFQEATPARQKTMLSTLGDD 471 >gi|161367653|ref|NP_285839.2| poly(A) polymerase I [Escherichia coli O157:H7 str. EDL933] Length = 472 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK + +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 52 SENALKVMYRLNKAGYEXWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 227 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 228 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 347 TYHDAFALAMNDVLDEACRSLAIPK 371 >gi|204927237|ref|ZP_03218439.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323902|gb|EDZ09097.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 454 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 18/254 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A N + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA 252 + +E Sbjct: 269 TRYFTENGDSAMER 282 >gi|324112445|gb|EGC06422.1| poly(A) polymerase [Escherichia fergusonii B253] gi|325496076|gb|EGC93935.1| poly(A) polymerase I [Escherichia fergusonii ECD227] Length = 454 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 137/388 (35%), Gaps = 48/388 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLKEGIIRLIGNPETRYREDPVRMLRAVRFAAKLN 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 -MQISPETAEPIPRLAALLNDVPPARLFEESLKLLQAGYGYETYKLLREYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEAE--QVFE---------WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSAMERMIIQVLKNTDNRIHNGLRVNPAFLFAAMFWYPLMETAQRIAQESGL 328 Query: 288 -------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 I L + + + K + + Sbjct: 329 TWSDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRA 388 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDII 356 LAL + + + + + Sbjct: 389 AYDLLALRAEVERNSELQRLAKWWGEFQ 416 >gi|325104976|ref|YP_004274630.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pedobacter saltans DSM 12145] gi|324973824|gb|ADY52808.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pedobacter saltans DSM 12145] Length = 470 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 87/450 (19%), Positives = 177/450 (39%), Gaps = 54/450 (12%) Query: 15 LINILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + NI+S L NK ++ ++GG VRD + +D+DI K + + Sbjct: 9 IFNIISELSNKLGIETYVIGGFVRDIFLKRPSKDVDILVIGNGPEFALEVGKKLHTNVSV 68 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129 ++GT + + + R + +V + D RRDFTINA+ Sbjct: 69 FKNFGTAMLRYQDLEVEFVGARKESYRTNSRKPIVENGTLEDDQKRRDFTINAMAISLSK 128 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + G++ID G+ DL+ I DA+ +D LR++R RF + I + A Sbjct: 129 NNYGQLIDPFNGVKDLKENLIITPLDANETFSDDPLRMMRAIRFATQLNFQ-IHQSAIDA 187 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------- 242 + K+ +KI+S ERI E+NK++ +K P ++++ + IF + ++ Sbjct: 188 IVFNKERIKIVSKERITDELNKIILSKKPSIGFKYLFDTKLLHIIFPQMAKLYGIDYIDG 247 Query: 243 ---LDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKK-------------- 284 D ++ D L LR+ ++ K + KK Sbjct: 248 KGHKDNFYHTLQVLDNLSQNTDDLWLRWAAILHDIAKPATKRFEKKHGWTFHGHEDKGAR 307 Query: 285 --------FSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLYGDKV----MI 326 LP + L+ ++ ++ +++L + GD + ++ Sbjct: 308 MVPKIFAELKLPLNEKMKYVQKLVLLHLRPIVLAKEIITDSAVRRLLFEAGDDIDDLMLL 367 Query: 327 AKLKIFLALHYNNLTHQDTCFI----LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKV 381 + I Y +++ + L+ + + + P++GDD++K + I G +V Sbjct: 368 CQADITTKNEYKVKKYRNNFELVKQKLKDVEEKDKIRNWQPPISGDDIIKAFNIKAGPEV 427 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 G I ++ + + + + L++ + Sbjct: 428 GIIKNKIREAILEGDIKNDRAEAFDLMKAI 457 >gi|262393336|ref|YP_003285190.1| poly(A) polymerase [Vibrio sp. Ex25] gi|262336930|gb|ACY50725.1| poly(A) polymerase [Vibrio sp. Ex25] Length = 453 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 20/270 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 29 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFR 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDW 113 R + I+ + ++ T R +G + Sbjct: 88 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEQKNKSISQQSKEGMLLRDNVYGTI 143 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 D+ RRDFTIN++Y + + DY G+ DL +R I+ IGD R ED +R+LR R Sbjct: 144 DEDAERRDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLRAVR 203 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + +I+ D L + S R++ E KLL++ + L + +F+ Sbjct: 204 FAVKL-DFDIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQ 262 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ++F + + S EQ+ + +DS Sbjct: 263 QLFPTIAAHFTEDYSSY--TEQMLDLVLDS 290 >gi|315453290|ref|YP_004073560.1| poly(A) polymerase [Helicobacter felis ATCC 49179] gi|315132342|emb|CBY82970.1| poly(A) polymerase [Helicobacter felis ATCC 49179] Length = 409 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 94/422 (22%), Positives = 178/422 (42%), Gaps = 26/422 (6%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 S ++ K S L+ + +++ +G ++CIVGG+VRD L+ +D D+A++ PD++ Sbjct: 6 TSFLRLKRALPSSLLTLHAMIEQGGYQACIVGGSVRDLLLGKEPKDYDLASSATPDQLKA 65 Query: 62 IFSK-TRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAKVV-FTRDWKADSL 118 + K+I ++GT+ + F+ITT R + D R+ + F + ++D Sbjct: 66 LLEGMEGIKIIELGRAFGTLGVGFEGWLFEITTFRQEGEYRDHRHPSALKFVKSIESDLA 125 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFTINAL Q ++D GL DL+ ++ +GD R+ ED LRILR RF + G Sbjct: 126 RRDFTINALALHPQKGLLDLYSGLEDLKKGVLRLVGDPTLRLQEDALRILRALRFSSVLG 185 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +++ A + L+ ++ ERI E KLL + F+ + Sbjct: 186 -FSLEEVTQKALWEQAPLLEHIAKERICMEFFKLLLGDFV-------RSCAPFQSLLEKT 237 Query: 239 QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + L L + R + L D +++ + +++ S Sbjct: 238 LKARLKPLEGLENTPLNLR------ARLLYLAQSWDTQTLRDFCTRLKFSKKL---TQSL 288 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + + + + +L+ L Y + + L DI+H Sbjct: 289 HKLHAHFPLEPQEPSRLWIKTQLQSLYLGELRALLG-FYQTQDPVLSARLKSELKDILHK 347 Query: 359 KK----PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++ + G D+++ G G +VG +L C + + + +E L ++ A Sbjct: 348 REAYALRHLAIKGTDLLELGFQ-GTQVGALLKACLEGVMCGAVCNEREALLQYAKECPAL 406 Query: 415 SQ 416 + Sbjct: 407 RE 408 >gi|289424329|ref|ZP_06426112.1| tRNA adenylyltransferase [Propionibacterium acnes SK187] gi|295131827|ref|YP_003582490.1| tRNA adenylyltransferase [Propionibacterium acnes SK137] gi|289155026|gb|EFD03708.1| tRNA adenylyltransferase [Propionibacterium acnes SK187] gi|291375544|gb|ADD99398.1| tRNA adenylyltransferase [Propionibacterium acnes SK137] Length = 499 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 45 VAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 104 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ K D +RRDFT+NA+ Sbjct: 105 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAAT 164 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 165 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 223 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 224 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 283 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 284 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 343 Query: 282 -------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + P ++ + + + + +++ GD+ + +L Sbjct: 344 AKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 401 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ GI PG Sbjct: 402 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMAILGIKPG 461 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 462 PEVGKAYKFLLNLRLDEGPHTPDEAKNALL 491 >gi|329929733|ref|ZP_08283409.1| putative tRNA adenylyltransferase [Paenibacillus sp. HGF5] gi|328935711|gb|EGG32172.1| putative tRNA adenylyltransferase [Paenibacillus sp. HGF5] Length = 432 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 168/370 (45%), Gaps = 21/370 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 +++ L + ++ VGG VRD M V D+DI T+ LP+ +F KVIPT I Sbjct: 23 DVIRTLLRHGHEAYWVGGCVRDEYMGRRVSDMDITTSALPEVTCSVFP----KVIPTGIK 78 Query: 77 YGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGK 134 +GT+ ++ + F++TT R + D R+ +V F + K D RRDFT+NA+ G Sbjct: 79 HGTVTVLMEGQSFEVTTYRVESGYEDHRHPTEVAFVGEVKEDLRRRDFTMNAMARGIDGS 138 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +D GG D+ + I+ +GDA R ED LR++R RF + +G +I + + Sbjct: 139 WVDPFGGREDIDRKVIRCVGDARLRFREDALRMVRCIRFASVFG-FSIALRTWRGILSER 197 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L ++ ERI SE K+L +PL + G+ + + D+ + IEA + Sbjct: 198 DTLGWIAMERIRSEFEKILAGPSPLRGLEMFVRSGLHSRMKAPFPYTTHDR--KTIEAME 255 Query: 255 VFEWKIDSLLRFIVLIS-WQDKKSILSMAKKFSLPREIRY---FLISFFNCNFNQKTLSI 310 E + ++L++ + + + ++ + R L+S Q Sbjct: 256 RIEPDHAMIRWSLLLLACGITAQEAEELLRSWTFSNKQRESIVKLLSLHESYLQQPNAGD 315 Query: 311 PEIKKLFYL-----YGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---LSDIIHWKKPL 362 E +L ++ +G + L++ ALH+ + FI Q L D+ Sbjct: 316 AESSRLKWIGLVLAHGVEAAQGWLEMQTALHHTGASSAPLTFIRQFDVWLQDLRIRSLKD 375 Query: 363 FPLTGDDVVK 372 +TG ++++ Sbjct: 376 LAITGSELLE 385 >gi|92115178|ref|YP_575106.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043] gi|91798268|gb|ABE60407.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043] Length = 473 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 140/387 (36%), Gaps = 45/387 (11%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + +L L+ ++ +VGG VRDSL+ +D DIAT P+ + +F +R Sbjct: 45 RRLFSENALKVLYRLHNAGHEAYLVGGCVRDSLLGKVPKDFDIATDATPEEIRTLFRNSR 104 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR-----------SDLITDGRYAKVVFTRDWKAD 116 + + + ++ ++TT R S DG + + D Sbjct: 105 I----IGRRFRIVHVRFGREIIEVTTFRGRPGDDHDDTLSQQSDDGLLLRDNVWGTIEED 160 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 +LRRDFT+NALY + + D+ G++D+ RT++ IGD R ED +R+LR RF A Sbjct: 161 ALRRDFTVNALYYNIADFSIHDWANGVSDIDERTLRLIGDPEVRYREDPVRMLRAVRFAA 220 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I+ + L + R++ E+ KL + + L + G+F +F Sbjct: 221 KL-DFDIEPRTEAPIGELAPLLLQIPPARLFEEVLKLFLSGHALRTFELLREYGLFAMLF 279 Query: 236 LDVQEISLDQLSQVIEAEQVF----------EWKIDSLLRFIVL---------------- 269 + E + EQ + L +L Sbjct: 280 PETDETLAEYDWAQPLIEQALINTDRRIQEDRPVTPAFLYGAMLWPGMRLRAERLEAEGM 339 Query: 270 --ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 I Q S S++++ + F + Q+ L K+ F K A Sbjct: 340 PPIPAQQTASQQSISRQLQHTSIPKRFSLPMREIWDLQQHLPKRRGKRAFQTLEHKRFRA 399 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSD 354 L D Sbjct: 400 AYDFLLLRETAGEIEPGLGDWWTAFQD 426 >gi|323975694|gb|EGB70790.1| poly(A) polymerase [Escherichia coli TW10509] Length = 454 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL- 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 209 DMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|283477356|emb|CAY73272.1| methionine gamma-lyase [Erwinia pyrifoliae DSM 12163] Length = 483 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 149/393 (37%), Gaps = 45/393 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F Sbjct: 46 ISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFR 104 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVF 109 R + ++ + ++ T R + G + Sbjct: 105 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNI 160 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+L Sbjct: 161 FGSIEDDAQRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRML 220 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I ++ + L + R++ E KLL+A + + + Sbjct: 221 RVVRFAAKL-DMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEY 279 Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWK-----------IDSLLRFIVLISWQDKKS 277 +F+ +F + +Q +E + K ++ F + + + Sbjct: 280 QLFQPLFPIITRCFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEM 339 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVM 325 +A++ L + L + ++L++P+ +L +G + Sbjct: 340 AQKIAQESGLAYYDAFALAMNEVLDETCRSLAVPKRITTLVRDIWQLQLRLSRRHGKRAW 399 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 400 KLMEHPKFRAAYDLLALRAEVENNHELQRLTTW 432 >gi|120553603|ref|YP_957954.1| poly(A) polymerase [Marinobacter aquaeolei VT8] gi|120323452|gb|ABM17767.1| poly(A) polymerase [Marinobacter aquaeolei VT8] Length = 455 Score = 252 bits (645), Expect = 7e-65, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 21/251 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V + +L LNK ++ +VGG VRD L+ +D DIAT P+ V +F Sbjct: 36 VSRSMISEP-AKKVLHRLNKSGYEAYLVGGGVRDILLGGQPKDFDIATNATPEEVHDLFR 94 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFT 110 +R + + ++ ++ ++TT R + G + Sbjct: 95 NSRL----IGRRFRIVHVVFGREIIEVTTFRGNARDTDDDLADDEHKTSEHGLLLRDNVY 150 Query: 111 RDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + + D+LRRDFTINALY +ID+ G+ DL+NR I+ IGD R ED +R+LR Sbjct: 151 GNQEEDALRRDFTINALYYCIRDFSIIDFANGVQDLKNRQIRLIGDPETRYREDPVRMLR 210 Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF A + I+ + + L + R++ E+ KL A + + + G Sbjct: 211 AIRFAAKL-DFEIEPETEAPIRELAPLLAHIPPARLFDEVLKLFSAGHGEATYRLLQDYG 269 Query: 230 IFKEIFLDVQE 240 + +F + Sbjct: 270 LLAPLFPETAR 280 >gi|226309497|ref|YP_002769459.1| tRNA nucleotidyltransferase [Rhodococcus erythropolis PR4] gi|226188616|dbj|BAH36720.1| putative tRNA nucleotidyltransferase [Rhodococcus erythropolis PR4] Length = 483 Score = 252 bits (645), Expect = 7e-65, Method: Composition-based stats. Identities = 84/452 (18%), Positives = 168/452 (37%), Gaps = 56/452 (12%) Query: 13 SDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 SD++N L + + +VGG+VRD+++ D+D T P++V + K Sbjct: 26 SDVLNPLGERFAEAGHELFLVGGSVRDAILGRFSGDLDFTTDARPEKVQALLKGWVDKQW 85 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA- 129 T I +GTI I + +ITT R+D R V + D +RRDFT+NA+ Sbjct: 86 DTGIEFGTISAIKHGQEIEITTFRADAYDRVSRNPIVEYGTTLADDLVRRDFTVNAMAMK 145 Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 D +D + G++ L + + +D LR+LR RF + G +++ Sbjct: 146 IGADGSYTFVDPLNGMDALLAGELDTPSAPENSFNDDPLRMLRAARFVSQLG-FTLNNRV 204 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244 A + ++ +++ER+ E+NK++ P++ I M + G+ + +V ++ L+ Sbjct: 205 FEAIKEMASQIERITAERVQVELNKMILGMYPVDGINMMVDSGLAAYVLPEVPQMKLEID 264 Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------- 277 L+ + +A + E D +LR+ L+ K Sbjct: 265 EHHQHKDVYQHSLTVLQQAIDLEEGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHE 324 Query: 278 ------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAK 328 + + +++ + + + Y+ ++ + Sbjct: 325 VVGAKLVRKRMRALKFSKQMVDDVSQLVFLHLRFHGYGKGQWTDSAVRRYVTDAGELLPR 384 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPP 377 L + + + DI + L G+ +++ IP Sbjct: 385 LHKLVRADCTTRNKRRAAQLQATYDDIEERIARIAEQEDLARVRPDLDGNAIMELLNIPA 444 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G +VG K+ ++ E LL+ Sbjct: 445 GPQVGKAWTFLKELRLDRGPLERDEAEAELLK 476 >gi|313886460|ref|ZP_07820176.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Porphyromonas asaccharolytica PR426713P-I] gi|332300372|ref|YP_004442293.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Porphyromonas asaccharolytica DSM 20707] gi|312924006|gb|EFR34799.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Porphyromonas asaccharolytica PR426713P-I] gi|332177435|gb|AEE13125.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Porphyromonas asaccharolytica DSM 20707] Length = 488 Score = 252 bits (645), Expect = 7e-65, Method: Composition-based stats. Identities = 91/442 (20%), Positives = 171/442 (38%), Gaps = 55/442 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI--SYGTIKIICR 85 ++ +VGG VRD + DIDI + + ++ + ++GT ++ + Sbjct: 33 ETYVVGGWVRDLFLQRPSDDIDIVCVGSGIALAKAVAREIGPKCQVHLFANFGTAQLRYK 92 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + R + +V + D RRDFTINA+ G+++D G Sbjct: 93 GVEVEFVGARRESYQRDSRKPIVEDGTLEDDQERRDFTINAMAISLNERTYGELVDPFYG 152 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL++ I+ D +D LR++R RF + G ID A +K ++ +KI+S Sbjct: 153 LEDLQDYMIRTPVDPQVTFDDDPLRMMRAVRFASQLGFF-IDDAVFDAIVKLRERIKIVS 211 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS----------LDQLSQVIE 251 +ERI E+NK++ + P + M G+ + I +VQ + D L+ + Sbjct: 212 AERIIVELNKIMLSPRPSVGLSLMEQTGLLELILPEVQLLRGTETVVGVGHKDNLAHTYQ 271 Query: 252 AEQVFEWKIDSL-LRFIVLIS----------------------WQDKKSILSMAKKFSLP 288 K D+L LR+ L+ + K + M ++ LP Sbjct: 272 VVDQLAAKSDNLYLRWAALLHDIAKPKTKRWDAQQGWTFHNHNYIGAKMVPRMFRRLKLP 331 Query: 289 RE------IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT- 341 + + + + + ++ I++L + GD + + + N Sbjct: 332 LDSHMQYVAKLVDLHMRPSSLVDEGVTDSAIRRLLFDAGDDIEDLMTLVESDVTSKNPKR 391 Query: 342 -------HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWI 393 +Q LQ + + + P+ GD++++ G+PP + VG + K + Sbjct: 392 VQQVLDNYQLIRRKLQEVEEKDRIRNFAPPIDGDEIMRLFGLPPSQIVGTLKERIKNAIL 451 Query: 394 NSSFQLSQEDLHHLLRKLIASS 415 + E LL K A Sbjct: 452 DGEIPNEYEPARELLLKEAAER 473 >gi|317493240|ref|ZP_07951662.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918633|gb|EFV39970.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 507 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 76/406 (18%), Positives = 144/406 (35%), Gaps = 48/406 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F R Sbjct: 87 SENALKVLYRLNKSGYEAYLVGGGVRDLLLGKQPKDFDITTSATPEQVRKLFRNCRL--- 143 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + + D+ R Sbjct: 144 -VGRRFRLAHVMFGPEIIEVATFRGHHEHAGDGKNISQQAQNGMLLRDNVYGNIEEDAQR 202 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DY GGL DL+ I+ IGD R ED +R+LR RF A Sbjct: 203 RDFTINSLYYSISDFTVRDYTGGLRDLQEGRIRLIGDPETRYREDPVRMLRAVRFAAKL- 261 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + L + S R++ E KLL++ + +F+ +F + Sbjct: 262 DMTICPQTAEPIPRLAALLHEIPSARLFEESLKLLQSGYGFATYKLLCEYQLFQPLFPVI 321 Query: 239 Q-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLI--------------SWQ 273 E ++Q+ + + +++ F ++ S Sbjct: 322 SRHFTPNGDSPLERIINQVLKNTDHRLQNSMRVNPAFLFAAMLWYPLIELAQKINDESGL 381 Query: 274 DKKSILSMAKKFSLPREIR-----YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 ++A L + R + + ++ + K + ++ Sbjct: 382 TYYDAFALAMNDVLDEQCRTLAIPKRITALVRDIWSLQLRLSRRQGKRAHKLMEQPKFRA 441 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 LAL + + Q + +++ G Sbjct: 442 AFDLLALRAQAENSNELQRLTQWWDEFQKAPLTRQKTMANELGDDG 487 >gi|229491197|ref|ZP_04385025.1| tRNA adenylyltransferase [Rhodococcus erythropolis SK121] gi|229321935|gb|EEN87728.1| tRNA adenylyltransferase [Rhodococcus erythropolis SK121] Length = 483 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 85/452 (18%), Positives = 167/452 (36%), Gaps = 56/452 (12%) Query: 13 SDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 SD++N L + +VGG+VRD+++ D+D T P++V + K Sbjct: 26 SDVLNPLGERFAAAGHELFLVGGSVRDAILGRFSGDLDFTTDARPEKVQALLKGWVDKQW 85 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA- 129 T I +GTI I + +ITT R+D R V + D +RRDFT+NA+ Sbjct: 86 DTGIEFGTISAIKHGQEIEITTFRADAYDRVSRNPIVEYGTTLADDLVRRDFTVNAMAMK 145 Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 D +D + G++ L + + +D LR+LR RF + G +++ Sbjct: 146 IGADGSYTFVDPLNGMDALLAGELDTPSAPENSFNDDPLRMLRAARFVSQLG-FTLNNRV 204 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244 A + ++ +++ER+ E+NKL+ P++ I M + G+ + +V ++ L+ Sbjct: 205 FEAIKEMASQIERITAERVQVELNKLMLGMYPVDGINMMVDSGLAAYVLPEVPQMKLEID 264 Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------- 277 L+ + +A + E D +LR+ L+ K Sbjct: 265 EHHQHKDVYQHSLTVLQQAIDLEEGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHE 324 Query: 278 ------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAK 328 + + +++ + + + Y+ ++ + Sbjct: 325 VVGAKLVRKRMRALKFSKQMVDDVSQLVFLHLRFHGYGKGQWTDSAVRRYVTDAGELLPR 384 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPP 377 L + + + DI + L G+ +++ IP Sbjct: 385 LHKLVRADCTTRNKRRAAQLQATYDDIEERIARIAEQEDLARVRPDLDGNAIMELLNIPA 444 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G +VG K+ ++ E LL+ Sbjct: 445 GPQVGKAWTFLKELRLDRGPLERDEAEAELLK 476 >gi|313814283|gb|EFS51997.1| tRNA adenylyltransferase [Propionibacterium acnes HL025PA1] Length = 507 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ K D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 351 Query: 282 -------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ GI PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMATLGIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499 >gi|162447078|ref|YP_001620210.1| poly(A) polymerase family protein [Acholeplasma laidlawii PG-8A] gi|161985185|gb|ABX80834.1| poly(A) polymerase family protein [Acholeplasma laidlawii PG-8A] Length = 382 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 106/401 (26%), Positives = 175/401 (43%), Gaps = 36/401 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L K ++ +VGG VRD LM DIDI T+ P VM+ F K +PT Sbjct: 6 AKNLIRDLKKHGYQAYLVGGVVRDFLMKAKFSDIDITTSAKPYEVMKHF-----KAVPTG 60 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I YGTI I+ F++TT R+D T D R+ V+++ + D +RRDFT+N + D+ Sbjct: 61 IKYGTITIMYDNVSFEVTTFRTDGPTSDFRHPDSVIYSDNVNDDVMRRDFTMNGILMDEY 120 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + DYVGG D+ ++ I+ IGD + R ED LR+LR F F + G I+ A Sbjct: 121 QNIYDYVGGQRDIEHKIIRAIGDPNERFKEDALRMLRAFYFQSKLG-FEIEPVTKQAIQD 179 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 +K L+ ERI +E+ K+L+ K+ A+ M GI K + +++ +I Sbjct: 180 NAHLIKELAMERIHAELIKILKGKHLKTALNSMIETGIHK-VLPGLEK-------GIIHT 231 Query: 253 EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + E ID+ ++ + K++ R+ T Sbjct: 232 ANLEEMPFIDTFFALSFTLNNGF------IPAKWTFSNRHRHKYQKASELALMHPTTIPD 285 Query: 312 EIKKLFYLYGDKVMIAKLKIFLAL---HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 Y YG ++ + K+ L Y N + Q+ L + S++ LT Sbjct: 286 TA---LYHYGLEISLLANKVNFNLGKQSYQNQSLQERFNNLPLKSELD------LALTSQ 336 Query: 369 DVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +++ G +G + H + ++E L + Sbjct: 337 EIMNIVNKKAGAWLGKLKAHMIDHILEKKLSNNKEALTSFV 377 >gi|310764989|gb|ADP09939.1| poly(A) polymerase I [Erwinia sp. Ejp617] Length = 459 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 147/386 (38%), Gaps = 44/386 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 28 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFRNCRL--- 84 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116 + ++ + ++ T R + G + + D Sbjct: 85 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNIFGSIEDD 143 Query: 117 SLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 144 AQRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 203 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I ++ + L + R++ E KLL+A + + + +F+ +F Sbjct: 204 RL-DMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLF 262 Query: 236 LDVQEISLDQLSQVIEAEQVFEWK-----------IDSLLRFIVLISWQDKKSILSMAKK 284 + +Q +E + K ++ F + + + +A++ Sbjct: 263 PIITRCFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKIAQE 322 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIF 332 L + L + ++L++P+ +L +G + Sbjct: 323 SGLAYYDAFALAMNEVLDETCRSLAVPKRITTLVRDIWQLQLRLSRRHGKRAWKLMEHPK 382 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 383 FRAAYDLLALRAEVENNHELQRLTTW 408 >gi|307699928|ref|ZP_07636979.1| tRNA adenylyltransferase [Mobiluncus mulieris FB024-16] gi|307614966|gb|EFN94184.1| tRNA adenylyltransferase [Mobiluncus mulieris FB024-16] Length = 486 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 91/449 (20%), Positives = 162/449 (36%), Gaps = 59/449 (13%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + + +VGG VRD+L+ + D+D+ T+ P+ + + V ++GT Sbjct: 25 DVFTGAGFEIALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWDVGRNFGT 84 Query: 80 IKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 I F+ITT R D D R V F + D RRDFT+NA+ + ++D Sbjct: 85 IGARKGDAIFEITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRLPEMTLVD 144 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GG DL + ++ +D LRI+R RF A G +ID L A ++ L Sbjct: 145 PTGGERDLEQQMLRTPISPEESFNDDPLRIMRAARFAAQLG-FDIDYSVLTAMQDMRERL 203 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------------- 241 +I+S ERI +E ++LL + P + M + ++ ++ E+ Sbjct: 204 QIVSRERIQAEFSRLLVSPWPRRGLELMVYTDVAAQVVPELMELRDMQDEHKRHKDVWEH 263 Query: 242 SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM----------------- 281 SL L Q I E + + D +LR L+ K + Sbjct: 264 SLIVLEQAIAQETGPDGPVPEPDLVLRLAALLHDIGKPATRRFEGGGVVTFHQHDVVGAK 323 Query: 282 -----AKKFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 ++ + LI+ + Y+ ++ +L Sbjct: 324 IARRRLRELKYDKATIRDVSRLIALHQRFHGYGEQPWTDSAVRRYVTDAGPLLQRLHRLT 383 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----------LTGDDVVK-YGIPPGKKVG 382 + + D+ L L G ++++ GI PG +VG Sbjct: 384 RADCTTRNVRKAERLSAAYDDLEARIAALQAKEELDAVRPELDGSEIMEILGISPGPQVG 443 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + + + + +E +LR+ Sbjct: 444 KAYKYLLAYRMENGL-VGRETAETVLREW 471 >gi|319427561|gb|ADV55635.1| poly(A) polymerase [Shewanella putrefaciens 200] Length = 494 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 17/248 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK K+ +VGG VRD L+ L +D D+ T P+ + ++F Sbjct: 69 ISRKQIS-ENALKVLYRLNKSGFKAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFR 127 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWK 114 R + I+ + ++ T R +GR + + Sbjct: 128 NCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEID 183 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR RF Sbjct: 184 EDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVRF 243 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 NI+ + L + + R++ E+ KL A L M +F Sbjct: 244 ATKL-SMNIEDVTAKPIKQLAPLLTDIPAARMYEEVLKLFFAGKALANFEMMQEYKLFAP 302 Query: 234 IFLDVQEI 241 +F V + Sbjct: 303 LFPQVDAL 310 >gi|50122241|ref|YP_051408.1| poly(A) polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49612767|emb|CAG76217.1| poly(A) polymerase [Pectobacterium atrosepticum SCRI1043] Length = 482 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 81/408 (19%), Positives = 139/408 (34%), Gaps = 52/408 (12%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + D + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F Sbjct: 50 TISRSDISD-NALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLF 108 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLR---------------SDLITDGRYAKVV 108 R + I+ + ++ T R S G + Sbjct: 109 RNCRL----VGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEAKNSSQQAQSGMLLRDN 164 Query: 109 FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 + D+ RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+ Sbjct: 165 IFGSVEEDAQRRDFSINSLYYSISDFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRM 224 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 LR RF A + + + L + + R++ E KLL++ + Sbjct: 225 LRAVRFAAKLN-MTVSPETAEPIPRLAALLHDIPAARMFEESLKLLQSGYGYPTYKMLCE 283 Query: 228 GGIFKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKK 276 +F+ +F + +E QV + +++ F ++ + + Sbjct: 284 YQLFQPLFPLLSRHFTPNSDSTLERMVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPLIE 343 Query: 277 SILSMAKKFSL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 +A++ L I + S + + K Sbjct: 344 HAQKLAQESGLAYLDAFALAMNDVLDEQCRSLAIPKRITSLVRDIWQLQMRLSRRQGKRA 403 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 Y + L L HQ+ + Q + P Sbjct: 404 YKLMEHPKFRAAYDLLCLRAEIENHQELLRLAQWWGEFQVAAPPRQQN 451 >gi|227541389|ref|ZP_03971438.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182940|gb|EEI63912.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 477 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 99/454 (21%), Positives = 171/454 (37%), Gaps = 66/454 (14%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 N+ ++ +VGG+VRDSL+ D+D T+ LPD I S+ V T I YGTI Sbjct: 31 FNRHGEELYLVGGSVRDSLLGRLAGDLDFTTSALPDITHDILSEWADAVWDTGIEYGTIS 90 Query: 82 IICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVI 136 + +ITT R+D + R V F + D +RRDFTINA+ Sbjct: 91 AAKDGQQVEITTFRADTYDGNSRNPVVKFGDTLEGDLVRRDFTINAMAIALSPTGDHTFC 150 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D +GGL L+NR I +D LR+LR RF A E ++ + + A Sbjct: 151 DPLGGLTALQNRIIDTPDAPEISFGDDPLRMLRAARFAAQL-EFDVATRVVDAMTTMAAE 209 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------------- 241 + ++ ERI +E++KL+ P I + GI IF ++ + Sbjct: 210 IDRITRERIQTELDKLICGAAPWRGIDLLVETGIMDRIFPEISALKALGDEHNQHKDVYQ 269 Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------- 281 SL L Q +E E+ D +LR+ L+ K + Sbjct: 270 HSLTVLRQAMEQEED---GPDLVLRWAALLHDIGKPQTKRVLDNGQVTFHQHDVVGAKMA 326 Query: 282 ---AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 + ++ + + + + +++ Y+ ++ +L + Sbjct: 327 RKRLRALKYSKQDIKDISQLIYLHMRFYGFPEGEWTDSAVRR--YVTDAGSLLPRLHKLV 384 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVG 382 + +I + D+ + L G+++++ GI PG VG Sbjct: 385 RADTTTRNKKKARWISRAYDDLEQRIAELAEKEDLARVRPDLDGNEIMEILGITPGPAVG 444 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 K+ ++ L ++ L+K Q Sbjct: 445 KAWTFMKELRLDRG-PLPHDEAVAALKKWWKEQQ 477 >gi|118465833|ref|YP_884405.1| tRNA adenylyltransferase [Mycobacterium avium 104] gi|118167120|gb|ABK68017.1| tRNA adenylyltransferase [Mycobacterium avium 104] Length = 480 Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats. Identities = 87/452 (19%), Positives = 171/452 (37%), Gaps = 55/452 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H L + S + + +VGG+VRD+L+ D+D T PD+V +I + + Sbjct: 21 HAPMLRELGSAFDAAGHQLYLVGGSVRDALLGRLSPDLDFTTDARPDQVQQILRRWADNL 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY- 128 T I +GT+ + + +ITT R+D R +V F + D +RRDFT NA+ Sbjct: 81 WDTGIEFGTVGVGKGDRRLEITTFRADTYDQVSRNPQVRFGNRLEDDLVRRDFTTNAMAV 140 Query: 129 ---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 D G+ +D +GGL LR R + +D LR+LR RF + G + Sbjct: 141 RITPDGPGEFLDPLGGLAALRQRVLDTPATPEESFGDDPLRMLRAARFVSQLG-FTVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISL 243 A + L +S+ER+ +E++KL+ +P+ I + + G+ + + ++ ++++ Sbjct: 200 VREAIERMAPQLARISAERVAAELDKLVLGDDPVAGIDLLVHSGMGEVVLPEIGGMQMAI 259 Query: 244 DQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------- 277 D+ Q + +A + + D +LR+ L+ K + Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPNGGVSFHHH 319 Query: 278 -------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIA 327 + + +++ + + + Y+ ++ Sbjct: 320 EVVGAKMVRKRLRALKYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIP 376 +L + + + + + L G+ +++ GIP Sbjct: 380 RLHKLVRADCTTRNKRRAARLQASYDRLEARIAELAAQEDLARVRPDLDGNQIMEILGIP 439 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G +VG K+ + E LL Sbjct: 440 AGPQVGEAWRFLKELRLERGPLDPDEATAELL 471 >gi|323495885|ref|ZP_08100953.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326] gi|323319101|gb|EGA72044.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326] Length = 454 Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats. Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V K D + + +L L+ + +VGG VRDSL+ +D DIAT P+++ ++F Sbjct: 31 VSRKKISD-NALKVLYRLHGAGFDAYLVGGGVRDSLLGQQPKDFDIATNATPEQIRQLFK 89 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R +G + Sbjct: 90 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSQQSKEGMLLRDNVYGTID 145 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y + DY GG+ DL ++ ++ IGD R ED +R+LR RF Sbjct: 146 EDAERRDFTINAMYYSIADYSIHDYAGGIEDLEDKLVRLIGDPETRYREDPVRMLRAIRF 205 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + +I+ D L+ + R++ E K+L++ + L M +F++ Sbjct: 206 AVKL-DFDIEEDTAAPIEDMAVLLRDIPPARLYEESLKMLQSGHGLETYHLMREYNLFQQ 264 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F + E + EQ+ + +DS Sbjct: 265 LFPTIAEFFTEDYDS--PTEQMLDLVLDS 291 >gi|313771128|gb|EFS37094.1| tRNA adenylyltransferase [Propionibacterium acnes HL074PA1] gi|313811705|gb|EFS49419.1| tRNA adenylyltransferase [Propionibacterium acnes HL083PA1] gi|313832472|gb|EFS70186.1| tRNA adenylyltransferase [Propionibacterium acnes HL007PA1] gi|313832699|gb|EFS70413.1| tRNA adenylyltransferase [Propionibacterium acnes HL056PA1] gi|314969145|gb|EFT13243.1| tRNA adenylyltransferase [Propionibacterium acnes HL037PA1] gi|314975136|gb|EFT19231.1| tRNA adenylyltransferase [Propionibacterium acnes HL053PA1] gi|314977547|gb|EFT21642.1| tRNA adenylyltransferase [Propionibacterium acnes HL045PA1] gi|314985106|gb|EFT29198.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA1] gi|315096968|gb|EFT68944.1| tRNA adenylyltransferase [Propionibacterium acnes HL038PA1] gi|315107385|gb|EFT79361.1| tRNA adenylyltransferase [Propionibacterium acnes HL030PA1] gi|327332438|gb|EGE74173.1| tRNA adenylyltransferase [Propionibacterium acnes HL096PA2] gi|327446787|gb|EGE93441.1| tRNA adenylyltransferase [Propionibacterium acnes HL043PA2] gi|327448772|gb|EGE95426.1| tRNA adenylyltransferase [Propionibacterium acnes HL043PA1] gi|328759834|gb|EGF73424.1| tRNA adenylyltransferase [Propionibacterium acnes HL099PA1] Length = 507 Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ K D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 351 Query: 282 -------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ GI PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMAILGIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499 >gi|227487679|ref|ZP_03917995.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092373|gb|EEI27685.1| possible tRNA adenylyltransferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 477 Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats. Identities = 99/454 (21%), Positives = 170/454 (37%), Gaps = 66/454 (14%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 N+ ++ +VGG+VRDSL+ D+D T+ LPD I S+ V T I YGTI Sbjct: 31 FNRHGEELYLVGGSVRDSLLGRLAGDLDFTTSALPDVTHDILSEWADAVWDTGIEYGTIS 90 Query: 82 IICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVI 136 + +ITT R+D R V F + D +RRDFTINA+ Sbjct: 91 AAKDGQQVEITTFRADTYDGTSRNPVVKFGDTLEGDLVRRDFTINAMAIALSPTGDHTFC 150 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D +GGL L+NR I +D LR+LR RF A E ++ + + A Sbjct: 151 DPLGGLTALQNRIIDTPDAPEISFGDDPLRMLRAARFAAQL-EFDVATRVVDAMTTMAAE 209 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------------- 241 + ++ ERI +E++KL+ P I + GI IF ++ + Sbjct: 210 IDRITRERIQAEMDKLICGAAPWRGIDLLVETGIMDRIFPEISALKALGDEHNQHKDVYQ 269 Query: 242 -SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------------- 281 SL L Q +E E+ D +LR+ L+ K + Sbjct: 270 HSLTVLRQAMEQEED---GPDLVLRWAALLHDIGKPQTKRVLDNGQVTFHQHDVVGAKMA 326 Query: 282 ---AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 + ++ + + + + +++ Y+ ++ +L + Sbjct: 327 RKRLRALKYSKQDIKDISQLIYLHMRFYGFPEGEWTDSAVRR--YVTDAGSLLPRLHKLV 384 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVG 382 + +I + D+ + L G+++++ GI PG VG Sbjct: 385 RADTTTRNKKKARWISRAYDDLEQRIAELAEKEDLARVRPDLDGNEIMEILGITPGPAVG 444 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 K+ ++ L ++ L+K Q Sbjct: 445 KAWTFMKELRLDRG-PLPHDEAVAALKKWWKEQQ 477 >gi|313792633|gb|EFS40719.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA1] gi|313803167|gb|EFS44363.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA2] gi|313839560|gb|EFS77274.1| tRNA adenylyltransferase [Propionibacterium acnes HL086PA1] gi|314963939|gb|EFT08039.1| tRNA adenylyltransferase [Propionibacterium acnes HL082PA1] gi|315079096|gb|EFT51103.1| tRNA adenylyltransferase [Propionibacterium acnes HL053PA2] gi|315081559|gb|EFT53535.1| tRNA adenylyltransferase [Propionibacterium acnes HL078PA1] gi|327334503|gb|EGE76214.1| tRNA adenylyltransferase [Propionibacterium acnes HL097PA1] gi|327457476|gb|EGF04131.1| tRNA adenylyltransferase [Propionibacterium acnes HL092PA1] Length = 492 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 78/442 (17%), Positives = 152/442 (34%), Gaps = 59/442 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 + + + +VGG+VRD+LM D+D T PD+ + + + Sbjct: 40 RLGQAFQEAGHELHLVGGSVRDALMGTLGHDLDFTTDATPDQTEAVLRTLTHATWDIGRA 99 Query: 77 YGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-K 134 +GTI ++TT R+D D R + + + D +RRDFT+NA+ + + Sbjct: 100 FGTIGARIDDWVVEVTTFRTDAYQPDSRKPVIAYGETLEEDLVRRDFTVNAMALNAATRE 159 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 D GL D+ ++ +D LR++R RF + G D + A Sbjct: 160 FHDPHAGLADIVAGKLRTPFPPERSFSDDPLRMMRAARFTSQLGFTVTD-EVRAAMTDMA 218 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--------- 245 + I+S+ER+ E+++ L +P + + GI + ++ + L++ Sbjct: 219 GRISIISAERVRDELSRTLLTDHPRAGLDLLVTTGIADHVLPELPALRLERDEHHRHKDV 278 Query: 246 -------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------------- 277 L Q I+ E+ + D R L+ K + Sbjct: 279 YEHSLTVLDQSIDLERRRGHEPDLTGRLAALLHDVGKPATRRFEPGGKVSFHHHDVVGAK 338 Query: 278 -ILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKI 331 + K + P +I + + + + +++ GD+ + +L I Sbjct: 339 LVRKRLKALAYPSQIVKDVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERLHI 396 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + D+ L G++++ GI PG Sbjct: 397 LTRSDCTTRNRRKAERLEFAYDDLERRIADLTAKEELAAIRPDLDGEEIMATLGIKPGPA 456 Query: 381 VGNILVHCKQEWINSSFQLSQE 402 VG ++ E Sbjct: 457 VGKAYKFLLNLRLDEGPHTPDE 478 >gi|296141887|ref|YP_003649130.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tsukamurella paurometabola DSM 20162] gi|296030021|gb|ADG80791.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Tsukamurella paurometabola DSM 20162] Length = 486 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 179/473 (37%), Gaps = 60/473 (12%) Query: 2 VSIVQHKWFHDSDLINIL----SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 ++ +L ++L + + +VGG+VRD+L+ D+D T P+ Sbjct: 14 TRLLAAAHISLRELSDVLVPLGTRFADAGHELYLVGGSVRDALLGRLTSDLDFTTDARPE 73 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKAD 116 +V + + T I +GT+ + +ITT R++ R V F + + D Sbjct: 74 QVQALLRGWADAMWDTGIEFGTVSAAFHDQQIEITTYRAEAYDRVTRNPVVKFGENLRDD 133 Query: 117 SLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 +RRDFTINA+ D D + GL+ L I +D LR+LR R Sbjct: 134 LVRRDFTINAMAVRIGRDGAEDFQDPLNGLDALLAGVIDTPATPEESFSDDPLRMLRAAR 193 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + G + + A + +++ER+ +E++KL+ ++P++ IV + + G+ + Sbjct: 194 FVSQLG-FAVAARVQRAMTDMAPEIDRITAERVRAELDKLILGEHPVDGIVLLVDTGLAE 252 Query: 233 EIFLDVQ--EISLDQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS-- 277 + ++ ++++D+ Q + +A + E D +LR+ L+ K + Sbjct: 253 RVIPEIPGMKLAIDEHHQHKDVFWHSMTVLQQAIDLEESDPDLILRWAALLHDIGKPATR 312 Query: 278 --------------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIK 314 + + + P+ + + + + Sbjct: 313 RHEPNGGVSFHHHEVVGAKMVRKRMRALAYPKSVIEDVAQLVFLHLRFHGYGDGQWTDSA 372 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFP 364 Y ++ +L + + + + + Sbjct: 373 VRRYATDAGPLLPRLHKLVRADCTTRNKRRAARLQATYDGLEERIAKIAAQEDLARVRPD 432 Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 L G+ +++ G+PPG +VG + K+ ++ + +++ L K A+ Q Sbjct: 433 LDGNAIMELLGLPPGPQVGAAWKYLKELRLDRG-PMDRDEAEAELAKWWAAQQ 484 >gi|291455678|ref|ZP_06595068.1| tRNA adenylyltransferase [Bifidobacterium breve DSM 20213] gi|291382606|gb|EFE90124.1| tRNA adenylyltransferase [Bifidobacterium breve DSM 20213] Length = 472 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 169/470 (35%), Gaps = 71/470 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D ++ P++ I + + Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRRADGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G +I Sbjct: 127 AMALRVPDLEFVDPFGGASDLAKGVLRTPVDPSQSFDDDPLRMMRAVRFVAQLG-FSIAP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + ++I+S+ER+ E+ K+L + P + + G+ +F ++ + L Sbjct: 186 DAAEAISSMRDRIEIVSAERVRDELTKMLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244 Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM--- 281 Q+ + + VFE D LR ++ K Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAITLETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304 Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLF 317 K + + N + + + +++ Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNLHLRFHGYVDEPWTDSAVRRYV 364 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367 G + +L + Q + ++ + L + G Sbjct: 365 KDAGH--LYERLNRLTRADATTQNKRKAMVFSQAMDEMEARVRELKKKEDFDAIRPDVDG 422 Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++++ G+ PG +G H + +++ + + L++ A + Sbjct: 423 NEIMELLGLEPGPMIGRAYKHMLEYRLDNG-PVDHDVAVAELKRWYAEIE 471 >gi|157960524|ref|YP_001500558.1| poly(A) polymerase [Shewanella pealeana ATCC 700345] gi|157845524|gb|ABV86023.1| poly(A) polymerase [Shewanella pealeana ATCC 700345] Length = 434 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 75/299 (25%), Positives = 124/299 (41%), Gaps = 27/299 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F R Sbjct: 14 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRL--- 70 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI----------TDGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ TLR + GR + D+ RRD Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNESGRLLRDNVYGSIDEDAERRD 129 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL +RTI+ IGD R ED +R+LR RF G Sbjct: 130 FTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKLG-M 188 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +I+ LK + + R++ E+ KL A L M G+F+ +F ++ Sbjct: 189 SIEPKAAEPIQGLAHLLKDIPAARMYEEVLKLFFAGKALENYHMMREFGLFEPLFPQLEA 248 Query: 241 I-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 + L ++ + + + + L+ + + +A + L Sbjct: 249 LLKEYPNGETAKLLQEMMANTDERVAQDKPVTPAFFYAALLWYPLSQRADDIALESGLS 307 >gi|260596566|ref|YP_003209137.1| poly(A) polymerase I [Cronobacter turicensis z3032] gi|260215743|emb|CBA28132.1| Poly(A) polymerase [Cronobacter turicensis z3032] Length = 479 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 144/383 (37%), Gaps = 41/383 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 58 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 114 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 115 -VGRRFRLAHVMFGPEIIEVATFRGHHEESESDRATSQRGQNGMLLRDNIFGSIEEDAQR 173 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGGLNDL I+ IGD R ED +R+LR RF A Sbjct: 174 RDFTINSLYYSVADFTVRDYVGGLNDLNEGIIRLIGDPETRYREDPVRMLRAVRFAARL- 232 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 233 DMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQAGYGYATYRLLCEYNLFQPLFPGI 292 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ +E QV + +++ F + + + +A++ L Sbjct: 293 SRYFTEKGDSPMERIIAQVLKNTDHRIHNDMRVNPAFLFAAMFWYPQLEMAQKIAQESGL 352 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIFLAL 335 + L + ++L+IP+ +L G + Sbjct: 353 AYYDAFALAMNDVLDEACRSLAIPKRITTLIRDIWMLQLRLSRRQGKRAWKLMEHPKFRA 412 Query: 336 HYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + +W Sbjct: 413 AYDLLALRAEAESNSELQRLTNW 435 >gi|170768603|ref|ZP_02903056.1| poly(A) polymerase [Escherichia albertii TW07627] gi|170122707|gb|EDS91638.1| poly(A) polymerase [Escherichia albertii TW07627] Length = 454 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL- 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I + + L + R++ E KLL+A + +F+ +F + Sbjct: 209 HMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|262401705|ref|ZP_06078271.1| poly(A) polymerase [Vibrio sp. RC586] gi|262352122|gb|EEZ01252.1| poly(A) polymerase [Vibrio sp. RC586] Length = 457 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 73/359 (20%), Positives = 140/359 (38%), Gaps = 37/359 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMREYNLFQQLFPTI 269 Query: 239 QEIS-----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 E LD + + + +I+ F ++ + K + + SL Sbjct: 270 AEHFTSDHSSQTEQMLDLVLDATDIRIEEDLRINPAFMFAAMLWYPMIKLADQLMESLSL 329 Query: 288 PR-----EIRYFLISFFNCNF---NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 E ++ + T +I +I +L + ++ + Sbjct: 330 HEFDAMTEASNRILDEVVKRIAIPRRHTTTIRDIWQLQQRLPRRSGKRAFRLLELSKFR 388 >gi|111020630|ref|YP_703602.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1] gi|110820160|gb|ABG95444.1| probable tRNA nucleotidyltransferase [Rhodococcus jostii RHA1] Length = 483 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 170/451 (37%), Gaps = 61/451 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + +VGG+VRD+++ D+D T P+RV ++ S T Sbjct: 29 LTPLGERFAAAGHELYLVGGSVRDAILGRLGTDLDFTTDAHPERVQKLLSGWADNQWDTG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY----A 129 I +GTI + +ITT R+D R V F + D +RRDFT+NA+ A Sbjct: 89 IEFGTISAAKAGQQIEITTYRADAYDRVSRNPVVQFGTKLEDDLVRRDFTVNAMAVRIGA 148 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D +D +GG+N L + + +D LR+LR RF + G + A Sbjct: 149 DGSQDFVDPLGGMNALLAGVLDTPSAPENSFNDDPLRMLRAARFVSQLG-FTLHERVHQA 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244 + ++ +++ER+ +E++KL+ + P++ + M G+ + +V ++ L+ Sbjct: 208 IVDMAPQIERITAERVRAELDKLILGEFPIDGMNVMCETGLADFVLPEVPQMKLEIDEHH 267 Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS------------------- 277 L+ + +A + + D +LR+ L+ K Sbjct: 268 QHKDVYWHSLTVLKQAVDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHEVVG 327 Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQK----------------TLSIPEIKKLFY 318 + + +++ + + T + P + +L Sbjct: 328 AKMVRKRMRALKYSKQMVDDVSQLVFLHLRFHGYGKGQWTDSAVRRYVTDAGPLLPRLHK 387 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPP 377 L + AL T+ D + L++ + L G+ +++ GIP Sbjct: 388 LVRADCTTRNKRRAAALQ---ATYDDIEERIARLAEQEDLARVRPDLDGNAIMELLGIPA 444 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G VG + K+ ++ E LL Sbjct: 445 GPDVGKAWKYLKELRLDRGPLSRDEAEAELL 475 >gi|269977721|ref|ZP_06184681.1| tRNA adenylyltransferase [Mobiluncus mulieris 28-1] gi|269934025|gb|EEZ90599.1| tRNA adenylyltransferase [Mobiluncus mulieris 28-1] Length = 486 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 162/449 (36%), Gaps = 59/449 (13%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + + +VGG VRD+L+ + D+D+ T+ P+ + + V ++GT Sbjct: 25 DVFTGAGFEIALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWDVGRNFGT 84 Query: 80 IKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 I F+ITT R D D R V F + D RRDFT+NA+ + ++D Sbjct: 85 IGARKGDAIFEITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRLPEMTLVD 144 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GG DL + ++ +D LRI+R RF A G +ID L A ++ L Sbjct: 145 PTGGERDLEQQMLRTPISPEESFNDDPLRIMRAARFAAQLG-FDIDYSVLTAMQDMRERL 203 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------------- 241 +I+S ERI +E ++LL + P + M + ++ ++ ++ Sbjct: 204 QIVSRERIQAEFSRLLVSPWPRRGLELMVYTDVAAQVVPELMDLRDMQDEHKRHKDVWEH 263 Query: 242 SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM----------------- 281 SL L Q I E + + D +LR L+ K + Sbjct: 264 SLIVLEQAIAQETGPDGPVPEPDLVLRLAALLHDIGKPATRRFEGGGVVTFHQHDVVGAK 323 Query: 282 -----AKKFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 ++ + LI+ + Y+ ++ +L Sbjct: 324 IARRRLRELKYDKATIRDVSRLIALHQRFHGYGEQPWTDSAVRRYVTDAGPLLQRLHRLT 383 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----------LTGDDVVK-YGIPPGKKVG 382 + + D+ L L G ++++ GI PG +VG Sbjct: 384 RADCTTRNVRKAERLSAAYDDLEARIAALQAKEELDAVRPELDGSEIMEILGISPGPQVG 443 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + + + + +E +LR+ Sbjct: 444 KAYKYLLAYRMENGL-VGRETAETVLREW 471 >gi|221111472|ref|XP_002167859.1| PREDICTED: similar to tRNA nucleotidyl transferase, CCA-adding, 1 [Hydra magnipapillata] Length = 297 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 103/269 (38%), Positives = 161/269 (59%), Gaps = 3/269 (1%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 +N + K+ +VGG VRD++ + +D+DI TT+LP+ + R+F + +KVIPT I Sbjct: 6 LNSFKTIKSKNHKARLVGGVVRDAIFGIESKDVDIITTMLPEEITRVFEELGHKVIPTGI 65 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK- 134 +GT+ I+ + F+ITTLR D+ +DGR+++V FT D+ D+LRRDFTINAL + Sbjct: 66 KHGTVSILYNNELFEITTLRKDISSDGRHSEVEFTGDFHVDALRRDFTINALSYCPFEET 125 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 V DY G+ L+ +KFIG+ RI EDYLRILRFFRF+ +G K ID D L A IK + Sbjct: 126 VYDYFNGIEHLKLGCVKFIGNPESRIQEDYLRILRFFRFYGKFG-KIIDKDSLDACIKYR 184 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 +K LS ERI SE++ +L N + I M + I +E+F + I +++ ++ + Sbjct: 185 SSIKKLSRERIKSELDSILNLPNYFDVIRLMNDHSILQEVFP-ISTIDIEKFTKANDIAN 243 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAK 283 +F ++ ++ +L K+ + K Sbjct: 244 IFGVLLNIKTKYALLFELSGIKNSYYLKK 272 >gi|216264893|ref|ZP_03436885.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 156a] gi|223889371|ref|ZP_03623957.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 64b] gi|225548827|ref|ZP_03769804.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 94a] gi|215981366|gb|EEC22173.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 156a] gi|223885057|gb|EEF56161.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 64b] gi|225370430|gb|EEG99866.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 94a] Length = 410 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 104/394 (26%), Positives = 172/394 (43%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLLKDLERRDFTINAIAMDIFNFNIIDCYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL +TI+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKTIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ ++VI+ + + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKVIKKIALLDKNKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I ++ FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL + I + ++ L ++ L Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTL 402 >gi|225551849|ref|ZP_03772792.1| polynucleotide adenylyltransferase [Borrelia sp. SV1] gi|225371644|gb|EEH01071.1| polynucleotide adenylyltransferase [Borrelia sp. SV1] Length = 410 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 172/394 (43%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLIQDLERRDFTINAIAMDIFNFNIIDCYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ ++VI+ + + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKVIKKIALLDKNKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I ++ FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL + I + ++ L ++ L Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTL 402 >gi|326772861|ref|ZP_08232145.1| tRNA adenylyltransferase [Actinomyces viscosus C505] gi|326637493|gb|EGE38395.1| tRNA adenylyltransferase [Actinomyces viscosus C505] Length = 504 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 81/461 (17%), Positives = 161/461 (34%), Gaps = 59/461 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 L + + + +VGG VRD+ + ++ D+D+ T+ P++ +I + Sbjct: 44 PALAALGHAFVRAGHEIALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWD 103 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 ++GTI ++TT R++ G R +V + D RRDFT+NA+ Sbjct: 104 VGRAFGTIGARKGSTIVEVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRL 163 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +++D GGL DL ++ A +D LRI+R RF A G +++ D + A Sbjct: 164 PDLELVDPCGGLADLNAGVLRTPVSAEQSFDDDPLRIMRAARFAAQLG-FDVEMDVMTAM 222 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 + L+I+S+ER+ +E+ +LL + P + M + G+ + ++ + Sbjct: 223 EEMAPRLEIVSAERVRAELERLLISPWPRRGLELMVHTGVADVVLPELSALRETVDEHKR 282 Query: 242 -------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---------- 281 +L L Q I+ E + D +LR ++ K + Sbjct: 283 HKDVYEHTLTVLDQAIDLETGPDGPVPGPDLVLRLAAILHDIGKPATRRFLPDGTVTFHG 342 Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326 + ++ + + Y ++ Sbjct: 343 HDHVGARMTAKRLRALRFDKQTIKDVSRLVELHLRFHGYVDAAWSDSAVRRYATDAGPLL 402 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVV-KYGI 375 +L + + + D+ L G ++ + G+ Sbjct: 403 ERLHRLTRADVTTRNRRKAAMLDRAYDDLEERIEALRAAEELAAIRPDLDGGQIMAELGV 462 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PG VG + + ++ LR A+ Q Sbjct: 463 APGPVVGEAYRFLMDLRMEKG-PIGEDLARQALRSWWAARQ 502 >gi|70732584|ref|YP_262347.1| poly(A) polymerase [Pseudomonas fluorescens Pf-5] gi|68346883|gb|AAY94489.1| poly(A) polymerase [Pseudomonas fluorescens Pf-5] Length = 555 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R Sbjct: 134 AVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVKAEFRNARI----IG 189 Query: 75 ISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ GR + + D+ RR Sbjct: 190 RRFKLVHIHFGREIIEVATFRANHPQNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQRR 249 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +++DY G++D+RN I+ IGD R ED +R+LR RF A Sbjct: 250 DFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDPRQRYQEDPVRMLRAVRFAAKLN- 308 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ + L+ + S R++ E+ KL + + + + +F +F Sbjct: 309 FGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFP 365 >gi|25497051|pir||C85498 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12512861|gb|AAG54447.1|AE005190_9 poly(A) polymerase I [Escherichia coli O157:H7 str. EDL933] Length = 454 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK + +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 34 SENALKVMYRLNKAGYEXWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 210 MR-ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 329 TYHDAFALAMNDVLDEACRSLAIPK 353 >gi|259907516|ref|YP_002647872.1| poly(A) polymerase I [Erwinia pyrifoliae Ep1/96] gi|224963138|emb|CAX54622.1| Poly(A) polymerase [Erwinia pyrifoliae Ep1/96] Length = 459 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 147/386 (38%), Gaps = 44/386 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 28 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGTKPKDFDVTTNATPDQMRKLFRNCRL--- 84 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116 + ++ + ++ T R + G + + D Sbjct: 85 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSQRDQNGMLLRDNIFGSIEDD 143 Query: 117 SLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRD TIN+LY + V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 144 AQRRDLTINSLYYNVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 203 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I ++ + L + R++ E KLL+A + + + +F+ +F Sbjct: 204 KL-DMSIAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLF 262 Query: 236 LDVQEISLDQLSQVIEAEQVFEWK-----------IDSLLRFIVLISWQDKKSILSMAKK 284 + +Q +E + K ++ F + + + +A++ Sbjct: 263 PIITRCFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKIAQE 322 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIF 332 L + L + ++L++P+ +L +G + Sbjct: 323 SGLAYYDAFALAMNEVLDETCRSLAVPKRITTLVRDIWQLQLRLSRRHGKRAWKLMEHPK 382 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 383 FRAAYDLLALRAEVENNHELQRLTTW 408 >gi|157372221|ref|YP_001480210.1| poly(A) polymerase I [Serratia proteamaculans 568] gi|157323985|gb|ABV43082.1| poly(A) polymerase [Serratia proteamaculans 568] Length = 505 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 79/407 (19%), Positives = 150/407 (36%), Gaps = 54/407 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D DI T P++V ++F R Sbjct: 83 SENALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 139 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI--------------TDGRYAKVVFTRDWKADS 117 + ++ + ++ T R +G + + D+ Sbjct: 140 -VGRRFRLAHVMFGPEIIEVATFRGHHEQQTPESDKNSSQQAQNGMLLRDNIFGSIEEDA 198 Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTIN+LY + DYV GL DL+ I+ IGD R ED +R+LR RF A Sbjct: 199 QRRDFTINSLYYGVADFTLRDYVDGLRDLKQGVIRLIGDPETRYREDPVRMLRAVRFAAK 258 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I + + L + R++ E KLL+A + + +F+ +F Sbjct: 259 L-DMTISDETAEPIPRLASLLHEIPPARLFEESLKLLQAGYGYPTYLKLCEYQLFQPLFP 317 Query: 237 DV-------QEISLDQ-LSQVIEAEQ---VFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285 + Q+ +++ L+QV++ +++ F ++ + + +A++ Sbjct: 318 QIARHFTPGQDTPMERILAQVLKNTDYRLQNNMRVNPAFLFAAMLWYPLLEHAQKLAQES 377 Query: 286 SL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 L I + + + + K + + Sbjct: 378 GLAYYDAFALAMNDVLDEQCRSLAIPKRITTLVRDIWQLQLRLSRRQGKRAHKLMEHPKF 437 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDII----HWKKPLFPLTGDD 369 LAL +Q+ + + + +K + GDD Sbjct: 438 RAAYDLLALRAEVEENQEMLRLTEWWGEFQEATPARQKTMLSTLGDD 484 >gi|332662823|ref|YP_004445611.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Haliscomenobacter hydrossis DSM 1100] gi|332331637|gb|AEE48738.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Haliscomenobacter hydrossis DSM 1100] Length = 471 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 94/456 (20%), Positives = 175/456 (38%), Gaps = 59/456 (12%) Query: 17 NILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV-- 70 IL ++++ K + +VGG VRD L+ +DIDI + + + + V Sbjct: 11 KILEIVSQAAAKMQVPAYVVGGYVRDRLLARPSKDIDIVCVGSGIELAQRVAGELHPVPR 70 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 I +GT I R + R + V + D RRDFTINAL Sbjct: 71 ITVFQRFGTAMIKHRDLEVEFVGARKESYRHDSRKPAVEDGSLEDDQNRRDFTINALAVS 130 Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 G +ID GL DL + I+ D +D LR++R RF + I+ Sbjct: 131 LNEADFGNIIDPFDGLGDLERKIIRTPLDPGKTFSDDPLRMMRAIRFATQL-DFVIEPAT 189 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----- 241 A K+ +KI+S+ERI +E+NK+++A P +++ G+ + IF ++ + Sbjct: 190 FKAIDTYKERIKIISAERIATELNKIIQAPKPSVGFKLLFDSGLLQLIFPEMTALHGVEI 249 Query: 242 -----SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMA------------- 282 D +E K ++L LR+ ++ K Sbjct: 250 RNGRAHKDNFYHTLEVLDNLSKKTENLWLRWSAILHDIAKPPTKRFHPEQGWTFHGHEVM 309 Query: 283 ---------KKFSLPREIR-YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF 332 ++F LP + + ++ + +L+ EI L+ Sbjct: 310 GATMTATIFRRFRLPMDQKMKYVQKLVRLHLRPISLTKEEITDSAMRRLLVDAGDDLEDL 369 Query: 333 LALHYNNLTHQDTCFILQVL-------------SDIIHWKKPLFPLTGDDVVK-YGIPPG 378 + L ++T ++ + + L + H + P+TG+ +++ +GI P Sbjct: 370 MLLCEADITSKNPDKVKRYLENYELVRQRLQAVEERDHLRNWQPPITGEVIMEAFGIGPS 429 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++VG I ++ ++ E + L+ + A Sbjct: 430 REVGEIKNFVREAILDGIIPNQYEAAYALMMEKAAE 465 >gi|307132158|ref|YP_003884174.1| poly(A) polymerase I [Dickeya dadantii 3937] gi|306529687|gb|ADM99617.1| poly(A) polymerase I [Dickeya dadantii 3937] Length = 467 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 75/400 (18%), Positives = 139/400 (34%), Gaps = 52/400 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+K ++ +VGG VRD L+ +D DI T P++V ++F R Sbjct: 45 SENALKVLYRLSKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 101 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117 + ++ + ++ T R G + + D+ Sbjct: 102 -VGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQETKNAAQQGHNGMLLRDNIFGTIEEDA 160 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDF+IN+LY V DY GLNDLR I+ IG+ R ED +R+LR RF A Sbjct: 161 QRRDFSINSLYYSIADFTVRDYTNGLNDLRQGLIRLIGEPETRYREDPVRMLRAVRFAAK 220 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G + I + + L + R++ E KLL+A + +F+ +F Sbjct: 221 LGMR-ISPETAEPIPRLASLLHDIPPARLFEESLKLLQAGYGYPTYQLLCEYQLFQPLFP 279 Query: 237 DV------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + + + + L + Q + +++ F ++ + + + ++ Sbjct: 280 LISRYFTANGESTMERMIVQVLKNTDQRIQN-DMRVNPAFLFSAMLWYPLVEHAQKLTQE 338 Query: 285 FSL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L I + S + + K + + Sbjct: 339 SGLAYFEAFALAMNDVLDEQCRSLAIPKRITSLIRDIWQLQLRLSRRQGKRAFKLMEHPK 398 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 L L HQ+ + Q + P + Sbjct: 399 FRASYDLLCLRAEIENHQELQRLAQWWGEFQVAAPPRQQV 438 >gi|227876518|ref|ZP_03994630.1| possible tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35243] gi|227843059|gb|EEJ53256.1| possible tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35243] Length = 486 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 162/449 (36%), Gaps = 59/449 (13%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + + +VGG VRD+L+ + D+D+ T+ P+ + + V ++GT Sbjct: 25 DVFTGAGFEIALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWDVGRNFGT 84 Query: 80 IKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 I F+ITT R D D R V F + D RRDFT+NA+ + ++D Sbjct: 85 IGARKGDAIFEITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRLPEMTLVD 144 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GG DL + ++ +D LRI+R RF A G +ID L A ++ L Sbjct: 145 PTGGERDLEQQMLRTPISPEESFNDDPLRIMRAARFAAQLG-FDIDYSVLTAMQDMRERL 203 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------------- 241 +I+S ERI +E ++LL + P + M + ++ ++ ++ Sbjct: 204 QIVSRERIQAEFSRLLVSPWPRRGLELMVYTDVAAQVVPELMDLRDMQDEHKRHKDVWEH 263 Query: 242 SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM----------------- 281 SL L Q I E + + D +LR L+ K + Sbjct: 264 SLIVLEQAIAQETGPDGPVPEPDLVLRLAALLHDIGKPATRRFEAGGVVTFHQHDVVGAK 323 Query: 282 -----AKKFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 ++ + LI+ + Y+ ++ +L Sbjct: 324 IARRRLRELKYDKATIRDVSRLIALHQRFHGYGEQPWTDSAVRRYVTDAGPLLQRLHRLT 383 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----------LTGDDVVK-YGIPPGKKVG 382 + + D+ L L G ++++ GI PG +VG Sbjct: 384 RADCTTRNVRKAERLSAAYDDLEARIAALQAKEELDAVRPELDGSEIMEILGISPGPQVG 443 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + + + + +E +LR+ Sbjct: 444 KAYKYLLAYRMENGL-VGRETAETVLREW 471 >gi|183602655|ref|ZP_02964019.1| probable RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|241191621|ref|YP_002969015.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241197026|ref|YP_002970581.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218073|gb|EDT88720.1| probable RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|240250013|gb|ACS46953.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251580|gb|ACS48519.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794613|gb|ADG34148.1| RNA nucleotidyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 502 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 83/448 (18%), Positives = 161/448 (35%), Gaps = 66/448 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + + + +VGG VRD L++ D+D + P++ I + + Sbjct: 37 PEAIELGQMFADEGFELALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFW 96 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD+ D R +V + + D RRDFT+N Sbjct: 97 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVN 156 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG NDL R ++ D + +D LR++R RF A G +I+ Sbjct: 157 AMALTVPDLEFVDPFGGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIEP 215 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L Sbjct: 216 ETAEAITRMTDRIEIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRL- 274 Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM--- 281 ++ + + VF+ D +LR L+ K Sbjct: 275 EIDEHHRHKDVFDHTMIVVDRAVALETGPDGPVPAPDLVLRLAALMHDIGKPKTRRFEPG 334 Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIP---EIKKLFYL 319 K + + + + + Y+ Sbjct: 335 GKVSFHHHDAVGAKMTRKRLKALRFDHHVVEQVSDLVDLHLRFHGYVDEPWTDAAVRRYV 394 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + A+L + + ++ L L GD+ Sbjct: 395 KDAGPLYARLNRLTRADATTQNRRKALMFEHAMDEMEERVAKLKEQEDIDAIRPDLNGDE 454 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSS 396 ++ + GI PG VG H + +++ Sbjct: 455 IMAELGIAPGPLVGKAYRHMLEYRLDNG 482 >gi|293390232|ref|ZP_06634566.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950766|gb|EFE00885.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 488 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 82/434 (18%), Positives = 158/434 (36%), Gaps = 56/434 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKT 66 + + ++ L + ++ +VGG +RD L+ +D D+AT P+++ IF + Sbjct: 62 PRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQRQC 121 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R+ +G + + Sbjct: 122 RL----VGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSEEGMLLRDNVYGTLEQ 177 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDF++NALY + + DY G++DL+N ++ IGD R ED +R+LR RF Sbjct: 178 DAERRDFSVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFM 237 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A E +D + LK + R++ E KLL+ + + + G+F+++ Sbjct: 238 AKL-EMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQYGLFEQL 296 Query: 235 FLDVQEISLDQLSQVIEA----------EQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 F +Q ++ + E E+V + + W + + M K Sbjct: 297 FPLLQNYFTEREDSMAEKMILRALTSTDERVADKLPINPAFLFAAFFWYPLRERVEMLKN 356 Query: 285 F-SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 L Y L S + L+IP + + L + Q Sbjct: 357 EGGLNNYDAYALASNDLLDVLCNALAIPR------RHTAVIRDIWSLQLQFLKRTPKSVQ 410 Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDV--VKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 + + G D+ ++ I G+ V W F Sbjct: 411 RVMEQSKFRA-------------GFDLLVMRAEIEGGEAV-----ELSAWWHEYQFSNDS 452 Query: 402 EDLHHLLRKLIASS 415 L+++L + Sbjct: 453 -QRQDLVKELPSQP 465 >gi|227112948|ref|ZP_03826604.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 452 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 138/400 (34%), Gaps = 51/400 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V ++F R Sbjct: 27 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRNCRL--- 83 Query: 72 PTSISYGTIKIICRKKYFDITTLR---------------SDLITDGRYAKVVFTRDWKAD 116 + I+ + ++ T R S G + + D Sbjct: 84 -VGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEIKNSSQQAQSGMLLRDNIFGSVEED 142 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDF+IN+LY V DY GLNDLR I+ IGD R ED +R+LR RF A Sbjct: 143 AQRRDFSINSLYYSISDFSVRDYTDGLNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAA 202 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + + L + + R++ E KLL++ + +F+ +F Sbjct: 203 KLN-MTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEYQLFQPLF 261 Query: 236 LDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKK 284 + +E QV + +++ F ++ + + +A++ Sbjct: 262 PLLSRYFTPNGDSTLERMVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPLVEHAQKLAQE 321 Query: 285 FSL-------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 L I + S + +T K Y + Sbjct: 322 SGLAYFDAFSLAMNDVLDEQCRSLAIPKRITSLVRDIWQLQTRLSRRQGKRAYKLMEHPK 381 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 L L HQ+ + Q + P Sbjct: 382 FRAAYDLLCLRAVIENHQELLRLAQWWGEFQVAAPPRQQN 421 >gi|325269379|ref|ZP_08135996.1| polyA polymerase family protein [Prevotella multiformis DSM 16608] gi|324988300|gb|EGC20266.1| polyA polymerase family protein [Prevotella multiformis DSM 16608] Length = 485 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 83/465 (17%), Positives = 177/465 (38%), Gaps = 62/465 (13%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + ++ + FH I ++ + +VGG VRD + DID+ +V Sbjct: 20 LAELLDNDIFHH-----ISDAADRLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 74 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + ++GT ++ + + R + + V + D Sbjct: 75 SGLKGILGRKAHLSVFRNFGTAQVKYKDTEVEFVGARKESYSHDSRKPAVEDGTLEDDQN 134 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL ++ G+++D GG++DL + I+ D +D LR++R RF Sbjct: 135 RRDFTINALAVCLNRERFGELVDPFGGVDDLWDGIIRTPLDPDVTFSDDPLRMMRCVRFA 194 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A I+ + A + + ++I+S ERI E+NK++ P V +Y G+ + I Sbjct: 195 AQLNFL-IEEETFEALERNAERIRIISGERIEEELNKIMMTPTPSKGFVELYRCGLLQLI 253 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKSILS--- 280 ++ + + + + F ++ L LR+ L+ K Sbjct: 254 LPELVALDVVETRNGRAHKNNFYHTLEVLDNICRHTDNLWLRWAALLHDIGKAKCKRWDT 313 Query: 281 -------------------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----IKK 315 + ++ LP + + ++ + + ++ E +++ Sbjct: 314 AAGWTFHNHNFVGAKMVPGIFRRLKLPMDSKMKYVQKLVDLHMRPIVIADEEVTDSAVRR 373 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLT 366 L GD + + + A + + F+ L+ L + + + + Sbjct: 374 LMNDAGDDI-DDLMTLCEADITSKNAVRKKRFLDNFRVVREKLKDLKERDYKRLLQPCID 432 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G+++++ + P ++VG + K +++ +E L LL K Sbjct: 433 GNEIMEMFHLRPSREVGVLKQTLKDAVLDNQVPNEREPLLALLTK 477 >gi|326799830|ref|YP_004317649.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sphingobacterium sp. 21] gi|326550594|gb|ADZ78979.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sphingobacterium sp. 21] Length = 469 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 177/453 (39%), Gaps = 60/453 (13%) Query: 16 INILSLL----NKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKV 70 + + L N+ + ++GG VRD LM + DIDI K Sbjct: 7 LPVFETLSNLANQYNTEIYVIGGYVRDRLMKRPFKNDIDILVIGSGIEFAEKVGKHLNTK 66 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + ++GT + + + R + +V + D RRDFT+NA+ Sbjct: 67 VSVFKNFGTAMLRYDQIDIEFVGARKESYRRDSRKPIVENGSLEDDQKRRDFTVNAMALS 126 Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 G+++D G+ D++ RTI+ + +D LR++R RF + K I S Sbjct: 127 LNKQNFGELLDPFNGVKDIQIRTIRTPLEPEATFSDDPLRMMRAIRFASQLQFK-ISSPT 185 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS---- 242 A ++ +KI+S ERI E+NK++ +K P ++++ G+ + IF + ++ Sbjct: 186 FNAIKSQRERIKIISKERITDELNKIICSKKPSIGFNYLFDTGLLELIFPLMTQLYGVEI 245 Query: 243 ------LDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK----------- 284 D +E + + E D LR+ ++ K + KK Sbjct: 246 IDGKGHKDNFYHTLEVVDNIAEVTDDLWLRWAAILHDIAKPATKRFDKKQGWTFHGHEDR 305 Query: 285 -----------FSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 LP R L+ + ++ +++L + GD + + Sbjct: 306 GARMVPKIFADLKLPLNDRMKFVQKLVLLHLRPIVLAKDVVTDSAVRRLLFEAGDDI-DS 364 Query: 328 KLKIFLAL-----HYNNLTHQDTCFILQV----LSDIIHWKKPLFPLTGDDVV-KYGIPP 377 +K+ A Y ++D +++ + + + P++G+D++ + + P Sbjct: 365 LMKLCHADVTTKNEYKRKKYRDNFELVKQRIKDVEERDQIRNWQPPVSGEDIMRSFNLRP 424 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G +VG I ++ + + ++E+ + K Sbjct: 425 GPEVGIIKKAIREAILEGDIKNNREEALAYMEK 457 >gi|294784658|ref|ZP_06749947.1| poly(A) polymerase [Fusobacterium sp. 3_1_27] gi|294487874|gb|EFG35233.1| poly(A) polymerase [Fusobacterium sp. 3_1_27] Length = 451 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 105/442 (23%), Positives = 182/442 (41%), Gaps = 55/442 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL+ LNK K IVGGA+RD L+ L +D+D T + + +FS+ Y T Sbjct: 14 IEILNKLNKYG-KGYIVGGAIRDILLGLKPKDVDFTTNLPYGTLKTLFSE--YTPKETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 S+G ++I ++I R D + KV F D + D RRDFTINA+ Sbjct: 71 SFGVLRIRINNIDYEIAKFRKDNYEEKDGLKIIPEEKKVSFVDDIRNDLARRDFTINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 +Q+ +ID G D+ NR I F+G A RI+ED LR+LR FRF + + ++ + + Sbjct: 131 YNQKEGIIDLYNGQKDIENRIINFVGKAEERIIEDPLRVLRAFRFMSRL-KFSLSENTVE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K+ LK +S ERI E +KLL +N N + M + G+ + I + + Sbjct: 190 AIKKQKELLKNISEERITMEFSKLLLGENIKNTLTLMKDTGVLELIISEFKATYDFNQYN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSI---------------------- 278 +F D LR+ L+ K + Sbjct: 250 PHHNLDLFNHIINVVSRVPADLELRYSALLHDIAKPIVQTFDEEGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFN----------QKTLSIPEIKKLFYLYGDKVMIAK 328 + + LP ++ ++ + K LS L+ L + + Sbjct: 310 RDILTRMKLPVKLIDTVVEIIKKHMVLYRDVTDKKFNKLLSEMGYGNLWRLIEHCIADNE 369 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 K + N H+ + + + + + G D+++ G ++G I Sbjct: 370 SKNNEVVSTENDLHE---RLKRAVEKQMQVTVNDLAVNGKDLIELDFT-GTEIGKIKKEL 425 Query: 389 KQEWINSSFQLSQEDLHHLLRK 410 ++++ Q +E++ + +++ Sbjct: 426 LDKYLSEEIQNEKEEMLNYVKE 447 >gi|229918726|ref|YP_002887372.1| polynucleotide adenylyltransferase region [Exiguobacterium sp. AT1b] gi|229470155|gb|ACQ71927.1| Polynucleotide adenylyltransferase region [Exiguobacterium sp. AT1b] Length = 379 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 89/402 (22%), Positives = 171/402 (42%), Gaps = 35/402 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I+ + + ++ IVGGAVRD ++ DID+AT++ P+ VM +F K+ +P Sbjct: 5 EYAKQIIDTIEQHGGEAYIVGGAVRDYVLGSLPDDIDLATSLFPEEVMALFPKS----VP 60 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ +I F++TT RS+ +D R V + D LRRDFT+NA+ Sbjct: 61 TGIEHGTVTVILDHHPFEVTTFRSEGSYSDSRRPDHVALGVSLEEDLLRRDFTMNAMAFH 120 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G+V+D GG +DL R I+ +G R ED LRI+R RF + + + + A+ Sbjct: 121 -DGRVVDLFGGQHDLEERIIRTVGSPFERFGEDALRIMRALRFMSQL-DFTLHDELREAA 178 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 L+ ++ ERI E KLL A+ M GI + + ++ + + +V Sbjct: 179 SGLGHKLEQIAMERIAIEFEKLLTGPAYKKALGEMVELGIHRHL----PNVTTELMQRVQ 234 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E + ++++ + + + LS K+ + + L + ++ T+ Sbjct: 235 EDTRT---PVNAVSGWALFLYHAQDDGWLSPWKRSNAIKREARTLAQLCDTGLDRMTIYA 291 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + L + + + ++ + + G D Sbjct: 292 TDEQTLSTYFRMNGERDRSR-------------------ELKQSLPMTSRKELKFNGRDA 332 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + G G+ + ++L ++ I + + L ++ + Sbjct: 333 LALG-ARGEAIKHLLADLERRVILNELPNHETVLKEEAKRWL 373 >gi|224532099|ref|ZP_03672731.1| polynucleotide adenylyltransferase [Borrelia valaisiana VS116] gi|224511564|gb|EEF81970.1| polynucleotide adenylyltransferase [Borrelia valaisiana VS116] Length = 410 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 104/397 (26%), Positives = 170/397 (42%), Gaps = 24/397 (6%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R KV +T++ D RRDFTINA+ D +IDY G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKKVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDYYDG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + I+S Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILIIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ +++I+ + Sbjct: 195 KERIKNEFHKLLEGTNIQKGIYYLKKVDFFKNFF------NLEIKTKLIKKTALLNKDKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNNNIFNVKKLSDIRYLL- 307 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP-------LTGDDVVKYG 374 K K + +H + + +I K P + G D+ Sbjct: 308 SKSTREHYKEIIDIHKALKGKKKKYLFIT--KNIKRKKLLKSPLSLKDLKINGKDIQNLK 365 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL I + ++ L ++ L Sbjct: 366 QIENKNIGKILNILLSYVIENPKLNNKNYLIKKIKTL 402 >gi|226320457|ref|ZP_03796023.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 29805] gi|226234099|gb|EEH32814.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 29805] Length = 410 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 171/394 (43%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ ++VI+ + + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKVIKKIALLDKNKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I ++ FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL + I + ++ L ++ L Sbjct: 369 NKNIGKILNILLRCVIENPKLNTKNYLIKKIKTL 402 >gi|221217911|ref|ZP_03589378.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 72a] gi|224532377|ref|ZP_03673007.1| polynucleotide adenylyltransferase [Borrelia burgdorferi WI91-23] gi|224533346|ref|ZP_03673940.1| polynucleotide adenylyltransferase [Borrelia burgdorferi CA-11.2a] gi|225550052|ref|ZP_03771013.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 118a] gi|221192217|gb|EEE18437.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 72a] gi|224512684|gb|EEF83055.1| polynucleotide adenylyltransferase [Borrelia burgdorferi WI91-23] gi|224513511|gb|EEF83868.1| polynucleotide adenylyltransferase [Borrelia burgdorferi CA-11.2a] gi|225369511|gb|EEG98963.1| polynucleotide adenylyltransferase [Borrelia burgdorferi 118a] gi|312147829|gb|ADQ30488.1| polynucleotide adenylyltransferase [Borrelia burgdorferi JD1] Length = 410 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 171/394 (43%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ ++VI+ + + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKVIKKIALLDKNKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I ++ FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL + I + ++ L ++ L Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTL 402 >gi|167622692|ref|YP_001672986.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4] gi|167352714|gb|ABZ75327.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4] Length = 430 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 81/330 (24%), Positives = 136/330 (41%), Gaps = 28/330 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F Sbjct: 8 ISRRQISD-NAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFR 66 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI----------TDGRYAKVVFTRDWK 114 R + I+ + ++ TLR + GR + Sbjct: 67 NCRL----VGRRFRLAHIVFGRDVIEVATLRGHHVDSEEKISKTNESGRLLRDNVYGSID 122 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NALY D + Y GGL DL +RTI+ IGD R ED +R+LR RF Sbjct: 123 EDAERRDFTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVRF 182 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + I+++ + LK + + R++ E+ KL A L M G+F+ Sbjct: 183 ATKL-DMTIEANAAKPIKGLARLLKDIPAARMYEEVLKLFFAGKALENFHMMREFGLFEP 241 Query: 234 IFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282 +F V+ + L ++ + + + + L+ + + +A Sbjct: 242 LFPQVEALLKEYPSGETAKLLQEMMTSTDERVAQDKPVTPAFFYAALLWYPLSQRADDIA 301 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + L Y +T+SIP Sbjct: 302 LESGLSTYDAYTAAMGDVMEQQCRTISIPR 331 >gi|296101313|ref|YP_003611459.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055772|gb|ADF60510.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 447 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 34/374 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R Sbjct: 27 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRL--- 83 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 84 -VGRRFRLAHVMFGPEIIEVATFRGHHEAGASDRTTSQRGQNGMLLRDNIFGSIEEDAQR 142 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL+ I+ IG R ED +R+LR RF A Sbjct: 143 RDFTINSLYYSVADFTVRDYVGGMQDLKEGLIRLIGTPETRYREDPVRMLRAVRFAAKL- 201 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + + + R++ E KLL+A + + +F+ +F + Sbjct: 202 DMRISPETAEPIPRLATLINDVPPARLFEEALKLLQAGHGFATYNLLREYNLFQPLFPSI 261 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV + +++ F + + ++ + ++ L Sbjct: 262 TRYFTENGDSPMERMIAQVLKNTDTRIRNDMRVNPAFLFAAMFWYPLLETAQRITQESGL 321 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + L + + +TL+IP+ + + + ++ + K L + + Sbjct: 322 AYYDAFALAANDVLDEGCRTLAIPKRITTLVRDIWQLQLRMSRRQGKRAWKLMEHP-KFR 380 Query: 344 DTCFILQVLSDIIH 357 +L + ++I Sbjct: 381 AAFDLLSLRAEIER 394 >gi|197336263|ref|YP_002156965.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Vibrio fischeri MJ11] gi|197317753|gb|ACH67200.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Vibrio fischeri MJ11] Length = 475 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 19/245 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L L+ + +VGG VRD L+ +D DIAT P+++ ++F Sbjct: 47 ISRKDLSD-NALKVLYRLSNAGYDAYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFR 105 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT------------DGRYAKVVFTRD 112 R + I+ + ++ T R +G + Sbjct: 106 NCRL----IGRRFRLAHILFGRDVIEVATFRGHHKEENEKKNISAQSDEGMLLRDNVYGT 161 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFT+NA+Y + + DY G+ DL+N I+ IGD R ED +R+LR Sbjct: 162 VEEDAERRDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLRAV 221 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A + I + L+ + + R++ E KLL+ N LN + + +F Sbjct: 222 RFAAKL-DMTICDKTAAPIAELSPLLRDIPAARLFEESLKLLQTGNGLNTYWMLRDFNLF 280 Query: 232 KEIFL 236 +++F Sbjct: 281 QQLFP 285 >gi|311114001|ref|YP_003985222.1| RNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945495|gb|ADP38199.1| RNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] Length = 495 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 93/466 (19%), Positives = 164/466 (35%), Gaps = 67/466 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + + + L K + +VGG VRD L++ + D+D T+ P+ I + Sbjct: 30 PEAMELGRLFAKHNYELALVGGPVRDMLLHRTSHDLDFCTSAKPEEFEHILRSWGHDGFW 89 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+K +ITT R D D R +V + + D RRDFT+N Sbjct: 90 DMGRKFGTLGAVRRRKDGTEVKVEITTYRCDDYEPDSRKPEVKYGDTLEGDLSRRDFTVN 149 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG NDL ++ D +D LR++R RF A G I++ Sbjct: 150 AMALRVPDLEFVDPFGGANDLAKGILRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FTIEA 208 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + L I+S+ER+ EI K+L + NP I M GI + ++ + L Sbjct: 209 NTAEAILDMVSRLDIVSAERVRDEITKMLLSANPRAGIEAMVESGIADRVLPEIPALRL- 267 Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSMA-- 282 ++ + + VFE D LR L+ K Sbjct: 268 EIDEHHRHKDVFEHTMMVLERAIALETDNEGAVPRPDLTLRLAALLHDIGKPRTRKFEEG 327 Query: 283 --------------------KKFSLPREIRYFLISFFNCNFNQKTLSIP---EIKKLFYL 319 K I + N + + Y+ Sbjct: 328 GKVSFHHHDVVGAKMTRKRMKALHFDHHIIDDVSELVNLHLRFHGYVDEPWTDSAVRRYV 387 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + + Q + ++ K L L G++ Sbjct: 388 KDSGHLYERLNRLTRADATTQNKRKSLMFEQAMDEMEERVKELKKQEDFNAIRPDLDGNE 447 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +++ + PG VG H +++ + + L+K +S Sbjct: 448 IMQLLDLKPGPIVGKAYKHMLDYRLDNG-PVDHDIAVEELKKWYSS 492 >gi|120597644|ref|YP_962218.1| poly(A) polymerase [Shewanella sp. W3-18-1] gi|146294217|ref|YP_001184641.1| poly(A) polymerase [Shewanella putrefaciens CN-32] gi|120557737|gb|ABM23664.1| poly(A) polymerase [Shewanella sp. W3-18-1] gi|145565907|gb|ABP76842.1| poly(A) polymerase [Shewanella putrefaciens CN-32] Length = 494 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 17/248 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK K+ +VGG VRD L+ L +D D+ T P+ + ++F Sbjct: 69 ISRKQIS-ENALKVLYRLNKSGFKAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFR 127 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWK 114 R + I+ + ++ T R +GR + + Sbjct: 128 NCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEID 183 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR RF Sbjct: 184 EDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVRF 243 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 NI+ + L + + R++ E+ KL A L M +F Sbjct: 244 ATKL-SMNIEDVTAKPIKQLAPLLTDIPAARMYEEVLKLFFAGKALANFEMMQEYKLFAP 302 Query: 234 IFLDVQEI 241 +F V + Sbjct: 303 LFPQVDAL 310 >gi|282880095|ref|ZP_06288815.1| hypothetical protein HMPREF9019_1920 [Prevotella timonensis CRIS 5C-B1] gi|281305968|gb|EFA98008.1| hypothetical protein HMPREF9019_1920 [Prevotella timonensis CRIS 5C-B1] Length = 475 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 83/462 (17%), Positives = 167/462 (36%), Gaps = 56/462 (12%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGED-KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 +S D+D+ + +S + D + +VGG VRD + DID+ V Sbjct: 4 LSNADLAHLLDNDIFHQISAVADHLDVECYVVGGYVRDLFLERPSNDIDVVVVGSGIEVA 63 Query: 61 RIFSKTRYK--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + K + ++GT +I + + R + + VV + D Sbjct: 64 AALKQKLGKRAYLSVFRNFGTAQIKFKGMEIEFVGARKESYSHDSRKPVVENGTLEDDQN 123 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL G+++D GL DL + I+ D +D LR+LR RF Sbjct: 124 RRDFTINALAVCLNQARFGELVDPFDGLLDLEDGLIRTPLDPDITFSDDPLRMLRCVRFS 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + + +KI+S ERI E+NK++ +P + +Y G+ + I Sbjct: 184 TQLKFF-IEDETFEALRRNAERIKIVSGERIADELNKIMMTDHPSRGFIELYRCGLLELI 242 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDS-----------LLRFIVLISWQDKKSILS--- 280 ++ + + F ++ LR+ L K Sbjct: 243 LPELVAMDQVDTKNGRAHKNNFYHTLEVVDNICQHTDKLWLRWAALFHDIGKPRSKRWDS 302 Query: 281 -------------------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPEI----KKL 316 + ++ P + + ++ + + ++ E+ + Sbjct: 303 LVGWTFHNHNFIGAKMVPGIFRRLKFPLDAKMKYVQKLVDMHMRPIAIADDEVTDSAVRR 362 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTG 367 + + + A + + + F+ L L + + + + G Sbjct: 363 LMNDAADDIDDLMTLCEADITSKNSQRKKRFLDNFRIVRAKLDDLKERDYKRLLQPCIDG 422 Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +++++ + P K+VG + K +++ +E L LL Sbjct: 423 NEIMELFHLKPSKEVGALKQALKDAVLDNKVPNEREPLMKLL 464 >gi|228472020|ref|ZP_04056788.1| polyA polymerase family protein [Capnocytophaga gingivalis ATCC 33624] gi|228276632|gb|EEK15345.1| polyA polymerase family protein [Capnocytophaga gingivalis ATCC 33624] Length = 476 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 93/459 (20%), Positives = 171/459 (37%), Gaps = 70/459 (15%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIAT----TILPDRVMR 61 D I + ++ + +VGG VRD L++ +DIDI T L ++V Sbjct: 4 AAALSDPIFHLISQIAHENNQECFVVGGFVRDLLLSRGQAKDIDIVTLGSGISLAEKVAA 63 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 I ++GT I + R + + +V D RRD Sbjct: 64 ELPNN--PKISVFKNFGTAMIKTENIDIEFVGARKESYREDSRKPIVEDGSLSDDQNRRD 121 Query: 122 FTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 FTINAL D G++ID G++DL+N I+ + + +D LR+LR RF Sbjct: 122 FTINALALSLSKDSFGELIDPFHGVDDLQNGLIRTPLEPNVTYSDDPLRMLRAIRFATQL 181 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 I+ L A K+ LKI+S+ERI E+NK+L + P ++ G+ I + Sbjct: 182 N-FVIEEKSLQAIADNKERLKIISNERIAEELNKILASPTPSVGFKLLFQTGLLSLILPE 240 Query: 238 VQEI----------SLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAK--- 283 + + D +E + + + D LR+ L+ K K Sbjct: 241 LVALQGVDEKEGQRHKDNFWHTLEVVDNISKHTDDLWLRWAALLHDIGKAPTKRFDKKIG 300 Query: 284 -------------------KFSLPREIRYFLISF------FNCNFNQKTLSIPEIKKLFY 318 + LP+ + + Q ++ +++L + Sbjct: 301 WTFHGHEFLGGKMVVKIFQRLRLPQNEKMKFVQKMVTMSSRPIIIAQDIVTDSAVRRLLF 360 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPL 365 GD + + L ++T ++ + + + H + P+ Sbjct: 361 DAGDD-----FEALMTLCEADITTKNPQRYKKYHQNFQIVRQKVVEVEEKDHIRNFQPPI 415 Query: 366 TGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQED 403 +G+D+++ G+ P ++VG + K+ + S +D Sbjct: 416 SGEDIMRLFGLSPSREVGQLKEAIKEAILEGIISNSYDD 454 >gi|255536246|ref|YP_003096617.1| tRNA nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255342442|gb|ACU08555.1| tRNA nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 506 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 90/459 (19%), Positives = 178/459 (38%), Gaps = 69/459 (15%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVIPT--S 74 + + K + IVGG VRD LM DID T + + + Sbjct: 51 VSEVAAKNGQSAYIVGGYVRDLLMKRGVPSDIDFVTEGSGIDLAQALANEINPRWKVSVF 110 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-- 132 +YGT + R + + V + D RRDFT+NAL Sbjct: 111 KNYGTAMFKHNGLDLEFVGARKESYAEDSRNPAVEAGTLEDDQKRRDFTVNALAISLNKE 170 Query: 133 --GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID GG++DL+N+ I+ + +D LR+LR RF + K I+ + L A Sbjct: 171 NFGELIDPFGGISDLKNKIIRTPLEPSQTYSDDPLRMLRAIRFASTLRFK-IEENSLAAI 229 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242 + +KI+S ERI E NK++ ++ P + + G+ + I ++ + Sbjct: 230 KTEAERIKIVSRERIMVEFNKIMLSEKPSAGLKILEQTGLMQIILPELTALRGIEEVEGQ 289 Query: 243 --LDQLSQVIEAEQVFEWKIDSL-LRFIVLIS----------------------WQDKKS 277 D +E DSL LR+ L+ + K Sbjct: 290 THKDNFWHTLEVVDNISKNTDSLWLRWAALLHDVGKAPTKKFVEGTGWTFHGHEFLGSKM 349 Query: 278 ILSMAKKFSLP-----REIRYFL-ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 + ++ ++ LP + ++ + +S S +++L + G+ L+ Sbjct: 350 VKTIFQRLKLPLGPDMKYVQKLVKLSSRPIALIDDGTSDSALRRLLFDAGED-----LED 404 Query: 332 FLALHYNNLTHQDT-------------CFILQVLSDIIHWKKPLFPLTGDDVVKY-GIPP 377 L+ ++T +++ ++ + + + P+TG+++++ + P Sbjct: 405 LFILNKADITTKNSFKQEKFKRNFETVALKIKEVEEKDQVRNFQPPITGEEIMELFSLKP 464 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+++G + K+ + Q ++ED + IA ++ Sbjct: 465 GREIGVLKEKVKEAILEGEIQNNREDARLFV---IAEAE 500 >gi|306817479|ref|ZP_07451223.1| tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35239] gi|304649703|gb|EFM46984.1| tRNA adenylyltransferase [Mobiluncus mulieris ATCC 35239] Length = 486 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 161/449 (35%), Gaps = 59/449 (13%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + + +VGG VRD+L+ + D+D+ T+ P+ + + V ++GT Sbjct: 25 DVFTGAGFEIALVGGPVRDALLGQAPHDLDLTTSARPEEIETVLRPWADAVWDVGRNFGT 84 Query: 80 IKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVID 137 I F+ITT R D D R V F + D RRDFT+NA+ + ++D Sbjct: 85 IGARKGDAIFEITTYRCDEYQRDSRKPLVKFGDTLEGDLWRRDFTVNAMALRLPEMTLVD 144 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GG DL + ++ +D LRI+R RF A G +ID L A ++ L Sbjct: 145 PTGGERDLEQQMLRTPISPEESFNDDPLRIMRAARFAAQLG-FDIDYSVLTAMQDMRERL 203 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------------- 241 +I+S ERI +E ++LL + P + M + ++ ++ ++ Sbjct: 204 QIVSRERIQAEFSRLLVSPWPRRGLELMVYTDVAAQVVPELMDLRDMQDEHKRHKDVWEH 263 Query: 242 SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM----------------- 281 SL L Q I E + + D +LR L+ K + Sbjct: 264 SLIVLEQAIAQETGPDGPVPEPDLVLRLAALLHDIGKPATRRFEGGGVVTFHQHDVVGAK 323 Query: 282 -----AKKFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 ++ + LI+ + Y+ ++ +L Sbjct: 324 IARRRLRELKYDKATIRDVSRLIALHQRFHGYGEQPWTDSAVRRYVTDAGPLLQRLHRLT 383 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----------LTGDDVVK-YGIPPGKKVG 382 + + D+ L L G ++++ GI PG +VG Sbjct: 384 RADCTTRNVRKAERLSAAYDDLEARIAALQAKEELDAVRPELDGSEIMEILGISPGPQVG 443 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + + + + E +LR+ Sbjct: 444 KAYKYLLAYRMENGL-VGHETAETVLREW 471 >gi|258623057|ref|ZP_05718070.1| Poly(A) polymerase [Vibrio mimicus VM573] gi|258584670|gb|EEW09406.1| Poly(A) polymerase [Vibrio mimicus VM573] Length = 457 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--QTEQMLDLVLDA 291 >gi|299136118|ref|ZP_07029302.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX8] gi|298602242|gb|EFI58396.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidobacterium sp. MP5ACTX8] Length = 461 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 91/455 (20%), Positives = 162/455 (35%), Gaps = 71/455 (15%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H + I L + + GG VRD L+ + D D+AT+ PD+V F +T Sbjct: 8 HYEAALTIARRLRELGHAAYFAGGCVRDLLLGVDPHDFDVATSATPDQVQAAFPRTE--- 64 Query: 71 IPTSISYGTIKIIC----RKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTI 124 +G + +I + ++ T R+D +DGR V F+ D + D LRRDFTI Sbjct: 65 -SVGAHFGVVLVIELVHGERTATEVATFRNDGAYSDGRRPDAVRFSLDPREDVLRRDFTI 123 Query: 125 NALYAD---------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 N L D Q V D+VGG DL + ++ IG+A R ED LR+LR RF A Sbjct: 124 NGLLLDVIDYEEGDRLQDCVRDFVGGQIDLEWKLVRAIGNAATRFAEDKLRMLRAIRFAA 183 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I+S + A + +S+ER+ E+ K+L + G+ +E+ Sbjct: 184 RL-DFAIESRTMAAIQEQAVTTTQVSAERVRDELTKILTEGGARRGFELLEESGLLREVL 242 Query: 236 LDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK------------ 283 +V + + + + + D ++L+ K + ++A Sbjct: 243 PEVARM------KGVAQPPQYHPEGDVWTHTLMLLGHLPKAASPTLAWGMLLHDVGKPAT 296 Query: 284 -------------------------------KFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + + +++ + + + Sbjct: 297 FTPPDPARPGDRIRFNGHVEIGVAVARTILLRLRFSNDDMEQILALIKHHMQFGDVMKMK 356 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK--KPLFPLTGDDV 370 L L + A ++ + D + + KP L G+ + Sbjct: 357 QSTLKRFLRLPKFDEHLALHRADSLSSHGALGMYDFAKQHFDEMGEEQIKPRLLLDGEAL 416 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 + G PG +LV + + + L Sbjct: 417 IAAGYKPGPGFREMLVAAEDAQLEGVVTTPEAALR 451 >gi|127514059|ref|YP_001095256.1| poly(A) polymerase [Shewanella loihica PV-4] gi|126639354|gb|ABO24997.1| poly(A) polymerase [Shewanella loihica PV-4] Length = 480 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 16/241 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 65 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLEPKDFDVVTNATPEEIKKLFRNCRL--- 121 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ TLR + +GR + D+ RRD Sbjct: 122 -VGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKVNAEGRLLRDNVYGTIDEDAERRD 180 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL +RT++ IGD R ED +R+LR RF G Sbjct: 181 FTVNALYYDISDFSIHSYGGGLQDLESRTLRLIGDPQKRYREDPVRMLRAVRFATKLG-M 239 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +ID + LK + + R++ E+ KL A N V M + G+F +F V Sbjct: 240 SIDKAAAQPISELAPLLKDIPAARMYEEVLKLFFAGQAQNNYVMMRDFGLFAPLFPLVDN 299 Query: 241 I 241 + Sbjct: 300 L 300 >gi|269958130|ref|YP_003327919.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Xylanimonas cellulosilytica DSM 15894] gi|269306811|gb|ACZ32361.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Xylanimonas cellulosilytica DSM 15894] Length = 500 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 86/476 (18%), Positives = 157/476 (32%), Gaps = 80/476 (16%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + +VGG VRD+ + + D+D AT+ PD+ + ++ Sbjct: 20 APAAIELGTLFQAAGHELALVGGPVRDAFLGRASNDLDFATSATPDQTQELLARWGDAHW 79 Query: 72 PTSISYGTIKIICRKKY-------FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFT 123 +GTI + ++TT R+D R V F D RRDFT Sbjct: 80 DIGKEFGTIGARRFGRGEQAADVVVEVTTYRTDEYDPASRKPVVAFGDTLDGDLSRRDFT 139 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NA+ +D GL DL ++ +D LR++R RF A G + Sbjct: 140 VNAMAVRLPDLTFVDPFDGLGDLARGVLRTPIAPERSFDDDPLRMMRAARFAAQLG-FTV 198 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 ++ L A + ++I+S+ER+ +E++KLL A P + + + G+ + + ++ + Sbjct: 199 EAGTLAAIVAMAGRIEIVSAERVQAELSKLLLADKPRRGLEVLVDTGLAEHVLPELPALR 258 Query: 243 LD----------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM-- 281 L+ L Q I E + D +LR L+ K + Sbjct: 259 LEIDEHHRHKDVYQHTLTVLEQAIAQETGPDGPVPGPDLVLRLASLLHDVGKPATRRFEP 318 Query: 282 --------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIP---------- 311 K +++ + + P Sbjct: 319 GGGVSFHHHEVVGAKLVARRLKALKYEKQVVKDVARLVELHLRFHGYGDPSGGADGPGRS 378 Query: 312 -------EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW------ 358 + Y+ ++ +L + + +D+ Sbjct: 379 GGGAAWTDSAVRRYVTDAGPLLERLHRLTRADSTTRNRRKAQRLADAYTDLERRIDALRA 438 Query: 359 ----KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L G ++ GIPP ++VG H + L E LR Sbjct: 439 QEEIDAIRPDLDGTQIMAILGIPPSREVGQAYQHLLALRMEHG-PLGPERAEAELR 493 >gi|315605488|ref|ZP_07880525.1| polyA polymerase family protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312755|gb|EFU60835.1| polyA polymerase family protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 533 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 88/455 (19%), Positives = 167/455 (36%), Gaps = 62/455 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ ++ +VGG VRD+ + ++ D D+AT+ P+R + S+ Sbjct: 39 PAIMELGTIFRDAGEELALVGGPVRDAFLGVTPHDFDMATSARPERTEELLSRWGNATWD 98 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 +GTI ++TT R+D G R +V F + D RRDFT+NA+ Sbjct: 99 IGKEFGTIGGRRGDVVVEVTTYRTDEYEIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRL 158 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q ++D GL DL ++ A +D LRI+R RF A G ++D D + A Sbjct: 159 PQMALVDPCAGLTDLAAGNLRTPVSAEQSFDDDPLRIMRAARFSAQLG-LDVDEDVMNAM 217 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 L+I+S+ERI +E+ +L+ + P I M + G+ + +V + Sbjct: 218 ETMASRLEIVSAERIRAELERLIISPYPRRGIELMVHTGVADIVLPEVAALVSTVDEHKR 277 Query: 242 -------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMA--------- 282 +L + Q I+ E + D +LRF L+ K + Sbjct: 278 HKDVYEHTLTVVEQAIDLETGPDGPVPAPDFVLRFAALMHDVGKPATRRFEANGSVSFHH 337 Query: 283 -------------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKV 324 K + + + + + S +++ GD Sbjct: 338 HEIVGAKMTRKRMKALHFDKATIEAVSTLVALHLRFHGYGEAAWSDSAVRRYVADAGD-- 395 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-Y 373 ++ +L + ++ D+ L GD +++ Sbjct: 396 LLERLHRLTRADCTTRNRRKAAYLSAAYDDLEQRIAALREQEELDAIRPDLDGDQIMEIL 455 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G+ P + V + + + ++ LL Sbjct: 456 GLRPSRAVKIARDYLLELRMERGPLGEEDAREALL 490 >gi|261212292|ref|ZP_05926578.1| poly(A) polymerase [Vibrio sp. RC341] gi|260838900|gb|EEX65551.1| poly(A) polymerase [Vibrio sp. RC341] Length = 457 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--QTEQMLDLVLDA 291 >gi|222151352|ref|YP_002560508.1| hypothetical protein MCCL_1105 [Macrococcus caseolyticus JCSC5402] gi|222120477|dbj|BAH17812.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 410 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 100/404 (24%), Positives = 175/404 (43%), Gaps = 30/404 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I+ L K IVGGA+R+ LM + V DIDI T LP++++RIF +T IP Sbjct: 23 AFAIIETLESYGYKGYIVGGAIRNLLMGIPVNDIDITTDCLPEQMIRIFERT----IPVG 78 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ F++TT R D D R V F K D RRDFT+NA+ AD + Sbjct: 79 IEHGTVIVLIEDFPFEVTTFREDGEYKDHRRPDSVNFVTSLKVDLERRDFTVNAIAAD-K 137 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++ DY G + +R I+ +GD R ED LRI+R RF + + I+ + L + Sbjct: 138 YQLYDYFDGKKHIEDRLIQAVGDPALRFEEDALRIIRALRFMSVL-DFQIEQETLENMKQ 196 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI--FLDVQEISLDQLSQVI 250 + + L+ +S ERI E+ KLL N ++ + GI I F D++ + Q ++ Sbjct: 197 SAQYLEAVSIERIIIELCKLLSGVNVTRSLKLFFELGINCYIPFFKDMKPYIVTQPIRLY 256 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E + + D +++ + L + + + Sbjct: 257 EYISSYIFLHD--------------QTLSQKLPQLKLSNAEKRNIKETITL-LHHLVEGD 301 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNL----THQDTCFILQVLSDIIHWKKPLFPLT 366 I+ L Y +G L + A++ L D + ++ + + + Sbjct: 302 RTIEYLLYHFGLDFFKRTLSLAKAVNIEALHINYKAYDEKSLSEIYDGLPIHSRESLAIN 361 Query: 367 GDDVVKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G +++Y G + +IL + +++ Q ++ L + Sbjct: 362 GTILMEYYKRNGGPWIKDILGITENAVLHNEVQNTKNTLLEWID 405 >gi|298507269|gb|ADI85992.1| nucleic acid-independent polyadenylating polymerase [Geobacter sulfurreducens KN400] Length = 459 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 76/404 (18%), Positives = 138/404 (34%), Gaps = 57/404 (14%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + +L L + +VGG VRD L+ +D D+AT P+++ RIF R Sbjct: 23 LVSPNALRVLYRLRDNGFIAYLVGGCVRDLLLGREPKDFDVATDATPNQIKRIFRNCRL- 81 Query: 70 VIPTSISYGTIKIICRKKYFDITTLR------------------------SDLITDGRY- 104 + I + ++ T R ++ + R+ Sbjct: 82 ---VGRRFRLAHIHFTDEIIEVATFRALSPPEQGEGEPVADETGQRGGDEAERLRPPRHL 138 Query: 105 -------AKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 + D+LRRDFT+NAL +IDY GG+ DL+ I+ IGD Sbjct: 139 VSDEGMVLRDNVFGTPGEDALRRDFTVNALAYCIADFSIIDYAGGMEDLQRGMIRTIGDP 198 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A G ++ + A + + ++ R++ E+ KL + Sbjct: 199 RVRFTEDPVRMLRAVRFAAVLG-FAVEEETWQAMLDLAPAITRATAPRLYEEMLKLFLSG 257 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE--QVFEW---------KIDSLLR 265 A + G+F +F + ++ A EW + L Sbjct: 258 EGERAYQLLRQTGLFAHLFPGFEAWLGEETDGFPHARTGSALEWVDSQVGSGEPVSPPLL 317 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 +L ++ + + P + ++ F I M Sbjct: 318 LALLFGGYLEEQSERFMGQGASPLDAVSAAVAAFLGEQAPLVAVPHRIG--------LAM 369 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 L + LH ++ + + + + G+D Sbjct: 370 REILALQQRLHRIPGKRPQAVLARASFAEAMAYLRCRCAMNGED 413 >gi|188533006|ref|YP_001906803.1| poly(A) polymerase I [Erwinia tasmaniensis Et1/99] gi|188028048|emb|CAO95905.1| Poly(A) polymerase [Erwinia tasmaniensis Et1/99] Length = 483 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 79/393 (20%), Positives = 148/393 (37%), Gaps = 45/393 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F Sbjct: 46 ISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFR 104 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVF 109 R + ++ + ++ T R + G + Sbjct: 105 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQAVDDRNSSQRDQNGMLLRDNI 160 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRD TIN+LY V DYVGGL+DL+ I+ IGD R ED +R+L Sbjct: 161 FGTIEDDAQRRDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRML 220 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I ++ + L + R++ E KLL+A + + + Sbjct: 221 RVVRFAAKL-DMSIAAETGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEY 279 Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEWK-----------IDSLLRFIVLISWQDKKS 277 +F+ +F + +Q +E + K ++ F + + + Sbjct: 280 QLFQPLFPTITRYVTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEM 339 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVM 325 +A++ L + L + ++L+IP+ +L +G + Sbjct: 340 AQKIAQESGLVYYDAFALAMNEVLDEACRSLAIPKRITTLVRDIWQLQLRLSRRHGKRAW 399 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 400 KLMEHPKFRAAYDLLALRAEVENNHELQRLTTW 432 >gi|315924857|ref|ZP_07921074.1| poly A polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621756|gb|EFV01720.1| poly A polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 413 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 101/407 (24%), Positives = 171/407 (42%), Gaps = 14/407 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKVIP 72 L + + +VGGAVRD+L+ D+D+AT P+ + +FS+ +V+ Sbjct: 5 LERLFDHFERAGYALYLVGGAVRDALLGAVPTDMDLATDARPEAMQALFSRALPGARVVT 64 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 +GT+ + ++F+ITT R+D DGR+ +VVF + D LRRDFT+N L D Sbjct: 65 AGARFGTVGVQLDGQWFEITTFRADKNYGDGRHPDRVVFGTSVREDVLRRDFTVNGLLMD 124 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 ++G V+DYVGGL+DL+ R ++ IGD R ED LR R R G I++ A Sbjct: 125 RRGVVLDYVGGLSDLKARRLRCIGDPQARFAEDKLRKWRCVRLATIKG-FAIEAATWHAL 183 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 +S ERI E K L + ++ + G++ ++ + EIS ++ Sbjct: 184 AADADT-AGVSCERIGGEWRKFLIGPHFGRGMMLLAASGLWADLIRRL-EISRARIPSEG 241 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 +A + D +R L++ + K++ + K +LP+ + + I Sbjct: 242 DASALDALPADPAVRLAFLLTGE--KALSEVLKPLALPKAMVRAAERYGERRQISADADI 299 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----KKPLFPLT 366 K G L + AL + + I+ + L+ Sbjct: 300 VAFKSALADLGRPQFEKLLALQEALAQTAADQRRAAANRACYARIVQTCQPIARSELALS 359 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 D+ G G +G+ L + E L +L + I Sbjct: 360 AADLKAMGFG-GAAIGSSLTLLLHHVYRRPAANTPEALRAVLAEAIG 405 >gi|258627266|ref|ZP_05722052.1| Poly(A) polymerase [Vibrio mimicus VM603] gi|258580449|gb|EEW05412.1| Poly(A) polymerase [Vibrio mimicus VM603] Length = 457 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--QTEQMLDLVLDA 291 >gi|227494171|ref|ZP_03924487.1| tRNA nucleotidyltransferase [Actinomyces coleocanis DSM 15436] gi|226831905|gb|EEH64288.1| tRNA nucleotidyltransferase [Actinomyces coleocanis DSM 15436] Length = 489 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 90/454 (19%), Positives = 164/454 (36%), Gaps = 59/454 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++I++ + + + +VGG VRD+ ++L+ D D+ T PD + K Sbjct: 31 KEIIDLGHVFAEAGYELALVGGPVRDAFLSLTPHDFDLTTNARPDTTEGLLEKWGAATWA 90 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 ++GTI + +ITT R++ G R V + + D RRDFT+NA Sbjct: 91 VGKAFGTIGGRKNQLTVEITTYRTEAYEVGSRKPVVEYGDTLEGDLTRRDFTVNACAITL 150 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 K++D GL DL N ++ A +D LRI+R RF A G ++ D + A Sbjct: 151 PDLKLVDPHNGLQDLANGVLRTPVSATQSFDDDPLRIMRAARFAAQLG-IDVSEDVIAAM 209 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------------- 237 + L+I+S+ERI +E+ +L+ + P + M G+ + + Sbjct: 210 EEQAHRLEIVSAERIRAELERLIISPYPRRGLELMVYTGVCDIVLPEFSALRETVDEHNR 269 Query: 238 ---VQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMA--------- 282 V E +L L + I E + D LRF L+ K + Sbjct: 270 HKDVYEHTLTVLDRAIALETDADGPVPGPDFTLRFAALMHDIGKPATRKFEADGTVSFHH 329 Query: 283 -------------KKFSLPREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMI 326 K ++ + + S + Y+ ++ Sbjct: 330 HDYVGAKMTRKRMKALKFDKQTTEDVSELVKLHLRFHGYGDQSWTDSAVRRYVADAGHLL 389 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVKY-GI 375 L + ++ +D+ L G ++++ G+ Sbjct: 390 EYLHRITKADCTTRNRRKALYLETAYADLEKRISELKAQEELDSIRPDLDGSEIMELLGL 449 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 PG +VG + + + L +E LL+ Sbjct: 450 TPGPEVGKAYKYLLELRMEHG-PLGKEKAAELLK 482 >gi|170728128|ref|YP_001762154.1| poly(A) polymerase [Shewanella woodyi ATCC 51908] gi|169813475|gb|ACA88059.1| poly(A) polymerase [Shewanella woodyi ATCC 51908] Length = 421 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 16/241 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + R+F R Sbjct: 2 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRL--- 58 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ TLR + +GR + D+ RRD Sbjct: 59 -VGRRFRLAHIVFGRDVIEVATLRGHHVDNEEKISKTNAEGRLLRDNVYGTIDEDAERRD 117 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL +RTI+ IGD + R ED +R+LR RF G Sbjct: 118 FTVNALYYDISDFSIHSYGGGLEDLHSRTIRMIGDPNTRYREDPVRMLRAVRFATKLG-M 176 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +D + + LK + + R++ E+ KL N M + G+F +F V+ Sbjct: 177 TVDEETAAPIYELAPLLKDIPAARMYEEVLKLFFNGQAENNFAMMRDFGLFAPLFPLVET 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|332535564|ref|ZP_08411337.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505] gi|332035021|gb|EGI71540.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505] Length = 493 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 81/415 (19%), Positives = 152/415 (36%), Gaps = 45/415 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K F + I +L L G + +VGG +RD L+ +D D+ T PD+V ++F Sbjct: 72 ISRKQFS-PNAIKVLYRLKDGGYDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFR 130 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD------------LITDGRYAKVVFTRD 112 R + I+ ++ ++ T+R +G+ + Sbjct: 131 NCRL----IGRRFRLAHIVFGREIIEVATMRGHHEAQEDKNQISQSSNEGQLLRDNVFGS 186 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR Sbjct: 187 IEEDAERRDFSINALYYSIKDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAV 246 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF + +I + L + R++ EI KL + + G+F Sbjct: 247 RFATKL-DMSIAPKSEKPISELASLLDNIPPARLFEEILKLFLNGKAEANFLMLRKYGLF 305 Query: 232 KEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 + +F ++ +I + Q+ Q + + K+ F L+ + + Sbjct: 306 RSLFPELDKILDKNPSGLEHTLIQQMFQNTDKRINADKKVTPAFIFAALLWFPLLERTKK 365 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAK 328 + + L + + N + +++P+ +L G + Sbjct: 366 IQSQEQLSEYDAFAQAMNKVLSDNSQHIAVPKRFTLGARDIWHIQHRLDKRAGQRAYRLT 425 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF-PLTG--DDVVKYGIPPGKK 380 + Y+ L + Q W + L + G + V G G K Sbjct: 426 QQPRFKAAYDFLLLRVDAGETQHTELAQWWTQYLSKDINGQKEMVKSLGHQGGPK 480 >gi|325677331|ref|ZP_08156996.1| polyA polymerase family protein [Rhodococcus equi ATCC 33707] gi|325551794|gb|EGD21491.1| polyA polymerase family protein [Rhodococcus equi ATCC 33707] Length = 484 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 81/451 (17%), Positives = 174/451 (38%), Gaps = 59/451 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + + + +VGG+VRD+++ D+D T P++V +I T Sbjct: 29 LDPLGARFTEAGHELYLVGGSVRDAVLGRLGTDLDFTTDAHPEQVQQILRGWADNQWDTG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I++GTI +ITT R+D R +V + D +RRDFT+NA+ G Sbjct: 89 IAFGTISAAKGADQIEITTYRTDTYDGVTRNPEVQYGTTLDEDLVRRDFTVNAMAVRVDG 148 Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +D + G++ L + +D LR+LR RF + G + A Sbjct: 149 TGTFEFVDPLNGMDALLAGVLDTPAAPEISFNDDPLRMLRAARFVSQLG-FTLAPRVHEA 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244 ++ ++ +++ER+ +E++KL+ + P++ + M G+ + ++ ++ L+ Sbjct: 208 IVEMSGQIERITAERVRTELDKLILGEFPIDGVNVMCETGLAARVIPEIPQLKLEIDEHH 267 Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS---------------- 280 L+ + +A + + D +LR+ L+ K Sbjct: 268 QHKDVYWHSLTVLKQAIDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHEVVG 327 Query: 281 ---MAKKFSLPREIRYFL-----ISFFNCNFN---QKTLSIPEIKKLFYLYGDKVMIAKL 329 + K+ + + + + F + F+ + + +++ GD ++ +L Sbjct: 328 AKMVRKRMRALKYSKQMVDEVGQLVFLHLRFHGYGEGQWTDSAVRRYVTDAGD--LLPRL 385 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 + + + D+ + L G+ +++ GIP G Sbjct: 386 HKLVRADCTTRNKRRAAKLQATYDDLERRIARIAEQEDLARVRPDLDGNAIMELLGIPAG 445 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +VG K+ ++ E LL+ Sbjct: 446 PQVGKAWKFLKELRLDRGPLERDEAEAELLK 476 >gi|300715373|ref|YP_003740176.1| poly(A)polymerase [Erwinia billingiae Eb661] gi|299061209|emb|CAX58317.1| Poly(A)polymerase [Erwinia billingiae Eb661] Length = 480 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 154/393 (39%), Gaps = 44/393 (11%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F Sbjct: 46 TISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLF 104 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVF 109 R + ++ + ++ T R + G + Sbjct: 105 RNCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEAEQVAEDRNTSQRGQNGMLLRDNI 160 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRD TIN+LY V DYVGGLNDL+ ++ IGD R ED +R+L Sbjct: 161 FGTIEDDAQRRDLTINSLYYSVSDFSVRDYVGGLNDLQQGIVRLIGDPETRYREDPVRML 220 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + ++ ++ + L + R++ E KLL+A + + + Sbjct: 221 RVVRFAAKL-DMSVAAETAEPIPRLATLLHDIPPARLFEETLKLLQAGYGYSTYLQLREY 279 Query: 229 GIFKEIFLDVQEISLDQLSQ-----VIEAEQVFEWKIDSLLR------FIVLISWQDKKS 277 +F+ +F + ++ +++ + + +I + +R F + + ++ Sbjct: 280 QLFQPLFPTITRYFTEKGDSNMERMIVQVLKNTDHRIHNQMRVNPAFLFSAMFWYPQLEA 339 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVM 325 +A++ L + L + ++L+IP+ +L +G + Sbjct: 340 AQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRITTLVRDIWQLQLRLSRRHGKRAW 399 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + Q L + W Sbjct: 400 KLMEHPKFRAAYDLLALRAEVENNQELLKLTAW 432 >gi|315225766|ref|ZP_07867554.1| polyA polymerase family protein [Parascardovia denticolens DSM 10105] gi|315119898|gb|EFT83030.1| polyA polymerase family protein [Parascardovia denticolens DSM 10105] Length = 509 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 78/444 (17%), Positives = 157/444 (35%), Gaps = 63/444 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++ + ++ +VGG VRD L+ D+D T+ P+ + K Sbjct: 45 ALDLGEVFSQAGFDLALVGGPVRDLLLGRDPHDLDFCTSAKPEEFEPLLRKWGDGFWDMG 104 Query: 75 ISYGTIKIICR-----KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY 128 +GT+ + + + ++TT RS++ D R +V + + D RRDFT+N++ Sbjct: 105 RKFGTLGTLKKLADGTEVSIEVTTYRSEVYDPDSRKPEVDYGDSLEGDLSRRDFTVNSMA 164 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + + +D GGL DL R ++ + +D LR++R RF A + I D Sbjct: 165 IRLPEMEFVDVFGGLEDLDRRILRTPVEPEQSFSDDPLRMMRAVRFVAQL-DFRISLDTS 223 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD--- 244 A + ++I+S+ER+ E+ KLL + +P + ++ G+ + ++ + ++ Sbjct: 224 AAIARMADRIEIVSAERVRDELVKLLLSAHPRKGLENLVASGLADYVLPELPALQMEMDP 283 Query: 245 -------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------- 281 L + I E E D LR ++ K Sbjct: 284 QHHHKDVFEHTMKVLERAIALETDAEGPVPAPDLELRLAAVMHDVGKPRTRRFEPDGKVS 343 Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323 K I + N + Y+ Sbjct: 344 FYHHDAVGAKITKRRLKALHFDHHIVNDVADLVNMHLRFHGYVDEPWSDSAVRRYVKDAG 403 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK- 372 + +L + Q + ++ + L GD +++ Sbjct: 404 PLYHRLNRLTRADATTQNKRKALAFEQAMDELERRVEDLKKKEDFAAIRPDLNGDQIMQI 463 Query: 373 YGIPPGKKVGNILVHCKQEWINSS 396 G+ PG++VG H + +++ Sbjct: 464 LGLAPGREVGKAYKHMLEFRMDNG 487 >gi|24214670|ref|NP_712151.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira interrogans serovar Lai str. 56601] gi|45657793|ref|YP_001879.1| polynucleotide adenyltransferase-like protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195655|gb|AAN49169.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira interrogans serovar Lai str. 56601] gi|45601033|gb|AAS70516.1| polynucleotide adenyltransferase-like protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 432 Score = 250 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 115/423 (27%), Positives = 199/423 (47%), Gaps = 34/423 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+++I ++ K + +VGG+VRD ++ ++ D+ T++LP++++ +F +T IP Sbjct: 19 EDILHITQIIRKEGGECYLVGGSVRDLALSKIPKEFDLTTSLLPEKILSLFKRT----IP 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + + ++ITT R D DGR + V F D RRDFT+NAL D Sbjct: 75 TGIKHGTVTVLIQDRAYEITTFRKDADYLDGRRPEIVEFGVSLSEDLKRRDFTMNALAFD 134 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + K +ID GL D++N+ I+ IG+ R ED LR +R RF + G +++ + A Sbjct: 135 LETKALIDEHSGLLDIQNKIIRTIGNPIERFTEDGLRPIRAIRFVSSLG-FHLEPNTAKA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I K +S ER+ E+NK+L++KNP ++ GI + +F ++ + +++ Sbjct: 194 IILCKNVTAKVSRERVHDELNKILKSKNPTPSLKLFKEFGILE-LFTKLKLYPVK--NEI 250 Query: 250 IEAEQVFEWKIDSLLRFIVLISW-----QDKKSILSMAKKFSLPREIRY------FLISF 298 +E + LR L +W Q++ S K + IS Sbjct: 251 VENKIQEVPAFPLSLRLSFLQAWLFGNFQNRNSAKQFMKDLRYSNQNTKESIFFSDTISV 310 Query: 299 FNCNFNQKTLSIPEIKK-LFYLYGDKVMIAKLKIF------LALHYNNLTHQDTCF--IL 349 + N TL+ EI+K L + LKI LA Y F IL Sbjct: 311 LLNHKNDSTLTDSEIRKILLHPVCVYSGRENLKIVIEHILNLAYIYEPTLKSVFNFHKIL 370 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +L L G+D+++ +PP K++G++L + + ++ L L Sbjct: 371 DLLLQPQALLVTELALRGEDILEVCPNLPP-KEIGSVLGKLLSFVLENPEANRKDSLIPL 429 Query: 408 LRK 410 L K Sbjct: 430 LPK 432 >gi|315657672|ref|ZP_07910554.1| polyA polymerase family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492144|gb|EFU81753.1| polyA polymerase family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 509 Score = 250 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 88/439 (20%), Positives = 160/439 (36%), Gaps = 58/439 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ + + + +VGG VRD+L+ ++ D+D+ T+ PD + V Sbjct: 43 VVPLGEVFATAGYEIALVGGPVRDALLGITPHDLDLTTSARPDETEAVLRSWADAVWDVG 102 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +YGT+ F+ITT RSD D R V F + D RRDFT+N++ Sbjct: 103 RNYGTLGARKGDDVFEITTYRSDDYQRDSRKPTVKFGDTLEGDLFRRDFTVNSIALRLPT 162 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D GGLNDL ++ D +D LRI+R RF A E ++D + + A Sbjct: 163 LELVDPTGGLNDLVAGILRTPIDPEESFSDDPLRIMRAARFAAQL-EFDVDYETMQAMET 221 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------- 241 ++ L I+S ER+ +E+++L+ A P + M + +++ ++ ++ Sbjct: 222 MRERLTIVSPERVQAELSRLMIASAPRRGLELMVYTRLAEQVLPELMDLLDMQDEHKRHK 281 Query: 242 -----SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------------ 281 SL L Q I E + D +LR ++ K + Sbjct: 282 DVWEHSLTVLDQAIAQETGPDGPVPAPDLVLRLAAILHDIGKPATRRFEAGGVVTFHQHD 341 Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAK 328 K + + + + Y+ ++ + Sbjct: 342 VVGARITRARLKALKYDKATIRDVSRLVALHQRFHGYGEQVWTDSAVRRYVTDAGPLLER 401 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVK-YGIPP 377 L + + D+ K L L GD++++ GIP Sbjct: 402 LHRLTRADCTTRNVKKAQRLAAAYDDLEARIKELKAQEELDAVRPELNGDEIMEILGIPA 461 Query: 378 GKKVGNILVHCKQEWINSS 396 G +VG + Sbjct: 462 GPEVGKAYKFMLAYRMEHG 480 >gi|293376425|ref|ZP_06622657.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Turicibacter sanguinis PC909] gi|292644934|gb|EFF63012.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Turicibacter sanguinis PC909] Length = 386 Score = 250 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 96/400 (24%), Positives = 176/400 (44%), Gaps = 37/400 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L+ L + ++ VGG VRD L+ + DIDI T+ PD V+ +F KT I T I + Sbjct: 10 VLNRLIENGYEAYFVGGMVRDRLLGRDIYDIDITTSAKPDVVIGLFEKT----IQTGIKH 65 Query: 78 GTIKIICRKKYFDITTLR-SDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++TT R + D R +V FT D RRDFT+NA+ G + Sbjct: 66 GTVTVMIEGIPVEVTTFRVEEAYEDFRRPSEVRFTSSLIEDLKRRDFTMNAIAESIDGTL 125 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D GL DL NR IK +G+A R +ED LR+LR RF + G ++ + A + Sbjct: 126 EDPFHGLKDLSNRQIKAVGEAKERFIEDPLRMLRGLRFMSKLG-FELEDETSKAIGEVGA 184 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI--FLDVQEISLDQLSQVIEAE 253 ++ +S ERI EI ++ + L A + + + I F +++ S L+++ E Sbjct: 185 LIEHISKERIKKEIEGMVSGEFSLKAFNLLIHTPLCDSITYFKELKRYSSSNLARLEEGV 244 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 ++F + + + K + + + + C Q Sbjct: 245 ELFA------------LIGLTVEEMEDYLKAWPFSNVEKRMIKAIRECYNKQLP-----P 287 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-LSDIIHWKKPLFPLTGDDVVK 372 + + Y Y + LALHY+ + + + + L ++ + + D+++ Sbjct: 288 QYIQYKYKED---------LALHYHRIQNVLKQSVEKFELRELPITDRKELAIEVADIIQ 338 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + P G + +L + E + + + L + +++L Sbjct: 339 WINHPKGPWLSQLLEALEFEVVMGTLENEVVSLRNYIQQL 378 >gi|157377033|ref|YP_001475633.1| polynucleotide adenylyltransferase [Shewanella sediminis HAW-EB3] gi|157319407|gb|ABV38505.1| Polynucleotide adenylyltransferase [Shewanella sediminis HAW-EB3] Length = 496 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 78/299 (26%), Positives = 126/299 (42%), Gaps = 27/299 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I +L L+K K+ +VGG VRD L+ L +D D+ T P+ + ++F R Sbjct: 76 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKKLFRNCRL--- 132 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD----------GRYAKVVFTRDWKADSLRRD 121 + I+ + ++ TLR + GR + D+ RRD Sbjct: 133 -VGRRFRLAHIVFGRDVIEVATLRGHHVEHVEQVSKTNAEGRLLRDNVYGTIDEDAERRD 191 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL++RTI+ IGD + R ED +R+LR RF + Sbjct: 192 FTVNALYYDISDFSIHSYGGGLEDLKSRTIRLIGDPNTRYREDPVRMLRAVRFATKL-DM 250 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ID + LK + + R++ EI KL N M G+F +F V Sbjct: 251 TIDKGAADPIYELAPLLKDIPAARMYEEILKLFFNGQAANNFTMMREFGLFAPLFPLVDS 310 Query: 241 ISLDQ--------LSQVIEAEQ---VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 +D+ L V+E+ E + + ++ + + +A + L Sbjct: 311 QLVDEPDGFAAKMLQAVMESTDSRVRAEKTVTPAFFYAAILWYPLSQRADDIALESGLS 369 >gi|237746883|ref|ZP_04577363.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS] gi|229378234|gb|EEO28325.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS] Length = 461 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 13/264 (4%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I ++ +L+ K+ IVGGAVRD L+ L +D D+AT P++V R+F + Sbjct: 34 PRLVSNSAIRVVRILHNAGYKAFIVGGAVRDLLLGLKPKDFDVATDATPEQVKRLFRRA- 92 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLI------TDGRYAKVVFTRDWKADSLRRD 121 + + ++ ++ ++TT R GR + + D+ RRD Sbjct: 93 ---FVIGRRFQIVHVLLGQELIEVTTFRGSSTKPALKDDAGRLLRDNSFGTQEEDAARRD 149 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y + + ++DY GG+NDLRNRT+K IGD R ED +R+LR RF A G Sbjct: 150 FTINAMYYNPANQLLLDYHGGMNDLRNRTLKIIGDPEQRYREDPVRMLRIVRFAAKLG-F 208 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +ID + + S R++ E+ KLL + + ++ + + G+ K + + + Sbjct: 209 SIDPATRAPIASLAPLINNVPSARLFDEMLKLLMSGHAMSCLKELRTRGLHKGLLP-LLD 267 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLL 264 ++L+Q E + + Sbjct: 268 VALEQPQAAHFIELALDKTDQRIR 291 >gi|296131529|ref|YP_003638779.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulomonas flavigena DSM 20109] gi|296023344|gb|ADG76580.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulomonas flavigena DSM 20109] Length = 507 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 152/462 (32%), Gaps = 67/462 (14%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + + + +VGG VRD+ + D+D+ T PD + + Sbjct: 39 APDALELGTRFRQAGFDLALVGGPVRDAFLGRPSNDLDLTTPATPDEAEPLLAAWGDAHW 98 Query: 72 PTSISYGTIKII--------CRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDF 122 +GT+ + ++TT R+D R V F + D RRDF Sbjct: 99 DIGREFGTVGARRFAGRRGATQDVVVEVTTYRTDAYDPTSRKPLVEFGDTLEGDLSRRDF 158 Query: 123 TINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NA+ +D GL DL ++ D +D LR++R RF A G + Sbjct: 159 TVNAMAVRVPDLVFVDPFDGLADLAAGVLRTPIDPRRSFDDDPLRMMRAARFVAQLGFR- 217 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ D A ++ ++I+S+ER+ E+ KLL + +P + + G+ + ++ + Sbjct: 218 LEDDTRAAIVEMASRIEIVSAERVRDELTKLLLSPHPRAGLEVLVETGLADHVLPELPAL 277 Query: 242 SLD----------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM- 281 L+ L + I E + D LR L+ K Sbjct: 278 RLEIDEHHRHKDVYQHTLMVLDKAIALETGPDGAVPGPDLTLRLAALLHDIGKPRTRRFE 337 Query: 282 ---------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLF 317 K + + + + E Sbjct: 338 PGGGVSFHHHEVVGAKLAAKRLKALRFDKHTVHDVARLTELHLRFHGYGDGEWTDSAVRR 397 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTG 367 Y+ ++ +L + + D+ L G Sbjct: 398 YVTDAGPLLERLHRLTRSDSTTRNQRKANRLKAAYDDLEQRIATLREAEELASIRPDLDG 457 Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +++ GI PG++VG + ++ + L +E LL Sbjct: 458 TQIMEALGIRPGREVGEAYRYLLEQRMEHG-PLGEERARELL 498 >gi|88810481|ref|ZP_01125738.1| polyA polymerase [Nitrococcus mobilis Nb-231] gi|88792111|gb|EAR23221.1| polyA polymerase [Nitrococcus mobilis Nb-231] Length = 475 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 17/242 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK + +VGG VRD + +D D+AT P++V ++F R Sbjct: 67 SRNALKVLYRLNKAGYAAYLVGGGVRDLSLGREPKDFDVATDARPEQVKQLFRNCRL--- 123 Query: 72 PTSISYGTIKIICRKKYFDITTLR-----------SDLITDGRYAKVVFTRDWKADSLRR 120 + + + ++ T R + ++ +GR + + D+LRR Sbjct: 124 -IGRRFRLAHVYFGSEIIEVATFRALQEAGEADEQARVLENGRLLRDNVFGTIEEDALRR 182 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+NALY ++DYVGG+ DLR ++ IG A R ED +R+LR RF G Sbjct: 183 DFTVNALYYHIADFTLVDYVGGMADLRCGVLRLIGAAEVRYREDPVRMLRAVRFAVKLGF 242 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + + + A + L + R++ E KL L A + + G+F +F + Sbjct: 243 R-MHPETAEAIPRMAHLLGHIPPARLFDETLKLFVTGMGLEAFECLRHYGLFGYLFPATE 301 Query: 240 EI 241 + Sbjct: 302 AV 303 >gi|296455134|ref|YP_003662278.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp. longum JDM301] gi|296184566|gb|ADH01448.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp. longum JDM301] Length = 471 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 91/468 (19%), Positives = 178/468 (38%), Gaps = 67/468 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D ++ P++ I + + Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD TD R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDTDSRKPEVNYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G + I Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + L I+S+ER+ E+ KLL + P + + G+ +F ++ + L Sbjct: 186 DAAEAITSMRDRLDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-KKSILSMAKKFSL-------PREIRYF-- 294 Q+ + + VFE + L R I L + D + + + P+ R+ Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304 Query: 295 -LISFFNCNFNQKTLSIPEIKKLFYLY--------------------------------- 320 +SF + + ++ +K L + + Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364 Query: 321 -GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + Q + ++ + L L G++ Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++ G+ PG +G H + +++ + + L++ A Q Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNG-PVDHDVAVEELKRWYAEIQ 471 >gi|320532845|ref|ZP_08033618.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134920|gb|EFW27095.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 171 str. F0337] Length = 495 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 84/463 (18%), Positives = 167/463 (36%), Gaps = 63/463 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 L + + + +VGG VRD+ + ++ D+D+ T+ P++ +I + Sbjct: 35 PALAALGYAFVRAGHEIALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWD 94 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 ++GTI ++TT R++ G R +V + D RRDFT+NA+ Sbjct: 95 VGRAFGTIGARKGSTIVEVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRL 154 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +++D GGL DL ++ A +D LRI+R RF A G +++ D + A Sbjct: 155 PDLELVDPCGGLADLAAGVLRTPVSAEQSFDDDPLRIMRAARFAAQLG-FDVEMDVMTAM 213 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 + L+I+S+ER+ +E+ +LL + P + + + G+ + ++ + Sbjct: 214 EEMASRLEIVSAERVRAELERLLISPWPRRGLELLVHAGVADVVLPELSALRETVDEHRR 273 Query: 242 -------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---------- 281 +L L Q I+ E + D +LR ++ K + Sbjct: 274 HKDVYEHTLTVLDQAIDLETGPDGPVPGPDLVLRLAAILHDIGKPATRRFLPDGTVTFHG 333 Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQK----------------TLSIPEI 313 + ++ + + T + P + Sbjct: 334 HDHVGARMTAKRLRALRFDKQTVKDVSRLVELHLRFHGYVDAAWSDSAVRRYATDAGPLL 393 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 ++L L V + L + L+ ++ + L G + + Sbjct: 394 ERLHRLTRADVTTRNRRKAAMLDRAYDDLEGRIESLRAAEELAAIRPDLD--GGQIMAEL 451 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ PG VG + + ++ LR A+ Q Sbjct: 452 GVAPGPVVGEAYRFLMDLRMEKG-SIGEDLARQALRSWWAARQ 493 >gi|219684016|ref|YP_002470399.1| tRNA adenylyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|219621666|gb|ACL29823.1| tRNA adenylyltransferase [Bifidobacterium animalis subsp. lactis AD011] Length = 472 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 83/448 (18%), Positives = 161/448 (35%), Gaps = 66/448 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + + + +VGG VRD L++ D+D + P++ I + + Sbjct: 7 PEAIELGQMFADEGFELALVGGPVRDLLLHRRSHDLDFCSNARPEQFEPILRRFGHDGFW 66 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD+ D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDVYDPDSRKPEVSYGDSLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG NDL R ++ D + +D LR++R RF A G +I+ Sbjct: 127 AMALTVPDLEFVDPFGGANDLNKRVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIEP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L Sbjct: 186 ETAEAITRMTDRIEIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADVVLPEIPALRL- 244 Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM--- 281 ++ + + VF+ D +LR L+ K Sbjct: 245 EIDEHHRHKDVFDHTMIVVDRAVALETGPDGPVPAPDLVLRLAALMHDIGKPKTRRFEPG 304 Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIP---EIKKLFYL 319 K + + + + + Y+ Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHVVEQVSDLVDLHLRFHGYVDEPWTDAAVRRYV 364 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + A+L + + ++ L L GD+ Sbjct: 365 KDAGPLYARLNRLTRADATTQNRRKALMFEHAMDEMEERVAKLKEQEDIDAIRPDLNGDE 424 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSS 396 ++ + GI PG VG H + +++ Sbjct: 425 IMAELGIAPGPLVGKAYRHMLEYRLDNG 452 >gi|238750543|ref|ZP_04612043.1| Poly(A) polymerase [Yersinia rohdei ATCC 43380] gi|238711191|gb|EEQ03409.1| Poly(A) polymerase [Yersinia rohdei ATCC 43380] Length = 473 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 147/393 (37%), Gaps = 45/393 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 44 ISRREISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 102 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 103 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNI 158 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 159 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 218 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L + R++ E KLL++ + + Sbjct: 219 RAVRFAAKL-DMTISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 277 Query: 229 GIFKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277 +F+ +F + E L Q+ + + + +++ F ++ + + Sbjct: 278 QLFQPLFPLIARNFTEHHDSPMERILVQVLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEH 337 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVM 325 + ++ L + L + ++L+IP+ +L G + Sbjct: 338 AQKLTQESGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAH 397 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 398 KLMEHPKFRAAYDLLVLRSEVENNHELQRLAQW 430 >gi|291303867|ref|YP_003515145.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Stackebrandtia nassauensis DSM 44728] gi|290573087|gb|ADD46052.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Stackebrandtia nassauensis DSM 44728] Length = 473 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 170/466 (36%), Gaps = 59/466 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M + ++ + + + +VGG VRD+++ D+D AT+ P+ Sbjct: 1 MSDRIGNEISVPPVADALGEVFAAAGHELHLVGGPVRDAILRRDTVDLDFATSAHPEVTQ 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLR 119 I + + T +GTI + R ++TT R+D R +V + + D R Sbjct: 61 AILEEHSSTIWTTGREFGTIGAMFRGHRVEVTTFRADTYDGVSRNPQVAYGDNLTDDLRR 120 Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+ G + D GGL DL +TI+ G +D LR++R RF + G Sbjct: 121 RDFTINAMAVSVPGHEFSDPFGGLTDLAQQTIRTPGTPEDSFADDPLRMMRAARFTSQLG 180 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++D A + ++ +S+ER+ E KL+ +P+ + + G+ +E ++ Sbjct: 181 -FHVDPAVKTAMTNMARDIERISAERVRDEFVKLMGGTDPVPGLRLLVATGLAEEFLPEL 239 Query: 239 QEISLDQLSQVIEAEQVFEWK--------------IDSLLRFIVLISWQDKKS------- 277 + + + + + + V+E D LLR L+ K Sbjct: 240 PALRM-AIDEHAQHKDVYEHTLTVVRNAMSLEEDGPDVLLRIAALLHDIGKPETKGIGPD 298 Query: 278 ---------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 K P++ + + E Sbjct: 299 GRVTFHHHEVAGARIARKRLKALKFPKDDIGAICHLIALHLRFYGYGRGEWTDSAVRRYV 358 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK-------------KPLFPLTGDD 369 A L L ++ T ++ ++ +D + K L G++ Sbjct: 359 TDAGAVLPRLHKLVRSDCTTRNKRKAARLAADYDALEERISRIAAEEDLAKVRPDLNGEE 418 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED----LHHLLRK 410 ++ I PG +VG H K+ + LS+E+ L R+ Sbjct: 419 IMTLLEIKPGPQVGKAWKHLKELRLEQG-PLSREEAETALFAWARE 463 >gi|50843738|ref|YP_056965.1| putative RNA nucleotidyltransferase [Propionibacterium acnes KPA171202] gi|50841340|gb|AAT84007.1| putative RNA nucleotidyltransferase [Propionibacterium acnes KPA171202] Length = 507 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 154/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFAQAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI + TT R+D D R ++V+ K D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEATTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 351 Query: 282 -------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ GI PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMAILGIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499 >gi|24372461|ref|NP_716503.1| polyA polymerase [Shewanella oneidensis MR-1] gi|24346447|gb|AAN53948.1|AE015532_8 polyA polymerase [Shewanella oneidensis MR-1] Length = 438 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 17/248 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F Sbjct: 11 ISRKQIS-ENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFR 69 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWK 114 R + I+ + ++ T R +GR + + Sbjct: 70 NCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEID 125 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR RF Sbjct: 126 EDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAVRF 185 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 ID + LK + + R++ E+ KL A + M +F Sbjct: 186 ATKL-SMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAVANFDMMQEYKLFAP 244 Query: 234 IFLDVQEI 241 +F V + Sbjct: 245 LFPQVDAL 252 >gi|197284108|ref|YP_002149980.1| poly(A) polymerase I [Proteus mirabilis HI4320] gi|194681595|emb|CAR40583.1| poly(A) polymerase [Proteus mirabilis HI4320] Length = 446 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 31/309 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F Sbjct: 11 ISRKDISD-NALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFR 69 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTR 111 +R + I+ + ++ T R G + Sbjct: 70 NSRL----VGRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFG 125 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRDFT+N+LY V DYVGGL DL++ TI+ IG R ED +R+LR Sbjct: 126 SIEEDAIRRDFTLNSLYYGVDDFAVRDYVGGLADLKSGTIRLIGSPETRYREDPVRMLRA 185 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + + I + + L+ + S R++ E KLL+ + M + + Sbjct: 186 IRFASKL-DMRIAPETAEPISQLAPLLRNIPSARLFEESLKLLQTGHGYKTYRLMRHFQL 244 Query: 231 FKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSIL 279 + +F V +Q +E EQV E +++ F ++ + + Sbjct: 245 LEPLFPLVASRITEQQDTPMERMIEQVLKNTDYRISKEMRVNPAFLFAAMLWYPLVEHAE 304 Query: 280 SMAKKFSLP 288 +A++ L Sbjct: 305 KLAQESGLS 313 >gi|238785058|ref|ZP_04629054.1| Poly(A) polymerase [Yersinia bercovieri ATCC 43970] gi|238714030|gb|EEQ06046.1| Poly(A) polymerase [Yersinia bercovieri ATCC 43970] Length = 473 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 44 ISRREISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 102 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT---------------DGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 103 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQALNGMLLRDNI 158 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 159 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 218 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L+ + R++ E KLL++ + + Sbjct: 219 RAVRFAAKL-DMTISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 277 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 278 QLFQPLFPLIARNFTEQHDSPMER 301 >gi|149376132|ref|ZP_01893897.1| poly(A) polymerase [Marinobacter algicola DG893] gi|149359537|gb|EDM47996.1| poly(A) polymerase [Marinobacter algicola DG893] Length = 439 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 21/258 (8%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 F +LS LN ++ +VGG VRD L+ +D DIAT P+ V +F +R Sbjct: 28 FISEPAKKVLSRLNNAGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRNSRL- 86 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKA 115 + + ++ ++ ++TT R + G + + + Sbjct: 87 ---IGRRFRIVHVLFGREVIEVTTFRGNAAEAEADDDDDDRRTSEHGLLLRDNVYGNLEE 143 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+LRRDFT+NALY V+D+ G+ DL NR ++ IGD R ED +R+LR RF Sbjct: 144 DALRRDFTVNALYYCIRDFTVVDFANGIEDLENRQMRLIGDPETRYREDPVRMLRAVRFA 203 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G +I+ D + L + R++ E+ KL A + + + Sbjct: 204 AKLG-FDIEPDTEAPIRELAPLLTHIPPARLFEEVLKLFSAGYGEATYDLLSEYNLLAPL 262 Query: 235 FLD-VQEISLDQLSQVIE 251 F + VQ I+ + ++I Sbjct: 263 FPETVQAINNGEPDELIR 280 >gi|326796836|ref|YP_004314656.1| poly(A) polymerase [Marinomonas mediterranea MMB-1] gi|326547600|gb|ADZ92820.1| poly(A) polymerase [Marinomonas mediterranea MMB-1] Length = 479 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 29/254 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LN + +VGG +RD L+ +S +D D+ T P+ V +FS +R Sbjct: 41 SPNALKVLHRLNGAGFDAYLVGGCIRDHLIGMSPKDFDVVTNATPEEVNDLFSNSRL--- 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------------------LITDGRYAKVV 108 + + + ++ +++T R++ + G + Sbjct: 98 -IGRRFRIVHVTFGREIIEVSTFRANTANNPPPIPKHDENKSLKNKDTARSSHGIILRDN 156 Query: 109 FTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 D+ RRDFT NALY + + + D+ GL D+ N+ I+ IGD R ED +R+ Sbjct: 157 VWGSIDEDAQRRDFTFNALYFNIADRSIHDFCNGLQDIENKQIRIIGDPRERYKEDPVRM 216 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 LR RF G +I+ + + L + R++ E+ KLL + + + Sbjct: 217 LRAIRFAGKLG-FDIEPETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGQGVTTFYLLRE 275 Query: 228 GGIFKEIFLDVQEI 241 G+FK +F D I Sbjct: 276 YGLFKYLFPDTDAI 289 >gi|148979543|ref|ZP_01815574.1| polyA polymerase [Vibrionales bacterium SWAT-3] gi|145961727|gb|EDK27023.1| polyA polymerase [Vibrionales bacterium SWAT-3] Length = 451 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 72/269 (26%), Positives = 118/269 (43%), Gaps = 19/269 (7%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN + +VGG VRD L+ +D DIAT P+++ +F Sbjct: 29 ISRKQISD-NALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFR 87 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL----------ITDGRYAKVVFTRDWK 114 R + I+ + ++ T R +G + Sbjct: 88 NCRL----IGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSKEGMLLRDNVYGSVD 143 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFTINA+Y + + DY GG+ DL ++ I+ IGD R ED +R+LR RF Sbjct: 144 EDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMRF 203 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+ D LK + + R++ E KLL++ L M +F++ Sbjct: 204 SAKL-DFDIEEDTADPIEGLAHLLKDIPAARLYEESLKLLQSGYGLETYHLMREYNLFQQ 262 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 +F V E + EQ+ + +DS Sbjct: 263 MFPAVAEYFTEDYDS--PTEQMLDLVLDS 289 >gi|197122792|ref|YP_002134743.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. K] gi|196172641|gb|ACG73614.1| tRNA cytidylyltransferase [Anaeromyxobacter sp. K] Length = 436 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 101/424 (23%), Positives = 177/424 (41%), Gaps = 30/424 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70 ++++L L+ +S +VGGAVRD L++ D D+AT P +VM +F +V Sbjct: 14 EAILDVLRRLSAAGHRSWLVGGAVRDLLLHRPRAATDFDVATPATPRQVMALFR----RV 69 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALY 128 IPT I +GT+ ++ + ++TT R + DGR V F + +AD RRDFT+NA+ Sbjct: 70 IPTGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPASVTFLAELEADLARRDFTMNAMA 129 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D Q D G D+ R I+ +G+ R ED LR +R RF A G + +D Sbjct: 130 YDPLQADFRDPFDGRVDMSRRRIRAVGEPAARFGEDGLRAMRAVRFAAQLGYR-LDPATR 188 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A A + ++ +S ER+ E+++L+ A + +A++ + G+ + + + L Sbjct: 189 AAIPGALEVVRKVSVERVAEELSRLVLAAHAGSALLLLRRTGLLGVVLPAIAALPLAAYR 248 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY---FLISFFNCNFN 304 + + + LR L+ + + LPR + L+ + C Sbjct: 249 HAVAVVR--HAPAEPALRLAALLHGVGPEEASKIVFGLRLPRRLSDEVGTLVRAYACPAA 306 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL-- 362 + ++P+ + + ++ L L V ++ + + Sbjct: 307 RHPAALPDAPADIRRWLARTGPQRVPAVFELVSAELRTLSPARRAAVAPEVSRARAAIDA 366 Query: 363 ------------FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L G V+ G PG VG L H + Q ++E L LR Sbjct: 367 ELAAAPPLATGDLALDGRAVMSLLGEGPGPHVGEALHHLLDRVLEDPAQNTREALAAELR 426 Query: 410 KLIA 413 + A Sbjct: 427 RWWA 430 >gi|212711310|ref|ZP_03319438.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM 30120] gi|212686039|gb|EEB45567.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM 30120] Length = 502 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 68/303 (22%), Positives = 126/303 (41%), Gaps = 30/303 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + D + + +L LNK ++ +VGG VRD L+ +D DI T P+++ ++F Sbjct: 75 ISRDDISD-NALKVLYRLNKNGYEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFR 133 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRD 112 R + I+ + ++ T R + G + Sbjct: 134 NCRL----VGRRFRLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNGMLLRDNIFGS 189 Query: 113 WKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D++RRDFT+N+LY + V DYV GL DL++ I+ IGD R ED +R++R Sbjct: 190 IEEDAIRRDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRAV 249 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF + I+ + L + S R++ E KLL+A + +F Sbjct: 250 RFACKLNMR-IELKTAEPIHRLAPLLGEIPSARLFEESLKLLQAGYGYATYKMLNQYHLF 308 Query: 232 KEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILS 280 +++F + + +E EQV + +++ F ++ + + Sbjct: 309 EQLFPVIASRFTENGDSPMEKIIEQVLKNTDFRLKNDKRVNPAFLFAAMLWYPVTEHAEK 368 Query: 281 MAK 283 +A+ Sbjct: 369 LAQ 371 >gi|289427314|ref|ZP_06429027.1| tRNA adenylyltransferase [Propionibacterium acnes J165] gi|289159244|gb|EFD07435.1| tRNA adenylyltransferase [Propionibacterium acnes J165] Length = 499 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 45 VAELGEAFAQASHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 104 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ K D +RRDFT+NA+ Sbjct: 105 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAAT 164 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 165 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 223 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 224 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 283 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 284 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 343 Query: 282 -------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + P ++ + + + + +++ GD+ + +L Sbjct: 344 AKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 401 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ GI PG Sbjct: 402 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMAILGIKPG 461 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 462 PEVGKAYKFLLNLRLDEGPHTPDEAKNALL 491 >gi|39998340|ref|NP_954291.1| polyA polymerase [Geobacter sulfurreducens PCA] gi|39985286|gb|AAR36641.1| polyA polymerase [Geobacter sulfurreducens PCA] Length = 455 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 76/404 (18%), Positives = 138/404 (34%), Gaps = 57/404 (14%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + +L L + +VGG VRD L+ +D D+AT P+++ RIF R Sbjct: 19 LVSPNALRVLYRLRDNGFIAYLVGGCVRDLLLGREPKDFDVATDATPNQIKRIFRNCRL- 77 Query: 70 VIPTSISYGTIKIICRKKYFDITTLR------------------------SDLITDGRY- 104 + I + ++ T R ++ + R+ Sbjct: 78 ---VGRRFRLAHIHFTDEIIEVATFRALSPPEQGEGEPVADETGQRGGDEAERLRPPRHL 134 Query: 105 -------AKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 + D+LRRDFT+NAL +IDY GG+ DL+ I+ IGD Sbjct: 135 VSDEGMVLRDNVFGTPGEDALRRDFTVNALAYCIADFSIIDYAGGMEDLQRGMIRTIGDP 194 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A G ++ + A + + ++ R++ E+ KL + Sbjct: 195 RVRFTEDPVRMLRAVRFAAVLG-FAVEEETWQAMLDLAPAITRATAPRLYEEMLKLFLSG 253 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE--QVFEW---------KIDSLLR 265 A + G+F +F + ++ A EW + L Sbjct: 254 EGERAYQLLRQTGLFAHLFPGFEAWLGEETDGFPHARTGSALEWVDSQVGSGEPVSPPLL 313 Query: 266 FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 +L ++ + + P + ++ F I M Sbjct: 314 LALLFGGYLEEQSERFMGQGASPLDAVSAAVAAFLGEQAPLVAVPHRIG--------LAM 365 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 L + LH ++ + + + + G+D Sbjct: 366 REILALQQRLHRIPGKRPQAVLARASFAEAMAYLRCRCAMNGED 409 >gi|91794520|ref|YP_564171.1| poly(A) polymerase [Shewanella denitrificans OS217] gi|91716522|gb|ABE56448.1| poly(A) polymerase [Shewanella denitrificans OS217] Length = 449 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 125/300 (41%), Gaps = 29/300 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK K+ +VGG VRD L+ L +D D+ T PD + +F R Sbjct: 19 SENALKVLYRLNKSGYKAYLVGGGVRDILLGLEPKDFDVVTNATPDEIKALFRNCRL--- 75 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ T R +GR + + D+ RRD Sbjct: 76 -VGRRFRLAHIVFGRDVIEVATFRGHHGENSDNISKSNAEGRLLRDNVYGEIDEDAERRD 134 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GG++DLRN++IK IGD R ED +R+LR RF + Sbjct: 135 FTVNALYYDISDYSIRSYGGGMDDLRNKSIKMIGDPETRYREDPVRMLRAVRFATKL-DM 193 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ID + L + + R++ E+ KL A M G+F +F VQ Sbjct: 194 QIDPVTAAPITELASLLADIPAARMYEEVLKLFFAGKAEANFELMLKFGLFAPLFPQVQA 253 Query: 241 ISLDQLSQVIEAEQVF------------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 + LD+ + A V + + + ++ + K+ MA + L Sbjct: 254 L-LDESPKGDTARMVRAIMRNTDLRVSQDKPVTPAFFYAAMLWYPLKRRAEDMAMEIGLS 312 >gi|262172326|ref|ZP_06040004.1| poly(A) polymerase [Vibrio mimicus MB-451] gi|261893402|gb|EEY39388.1| poly(A) polymerase [Vibrio mimicus MB-451] Length = 457 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAEPIEYLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--QTEQMLDLVLDA 291 >gi|212696602|ref|ZP_03304730.1| hypothetical protein ANHYDRO_01142 [Anaerococcus hydrogenalis DSM 7454] gi|212676333|gb|EEB35940.1| hypothetical protein ANHYDRO_01142 [Anaerococcus hydrogenalis DSM 7454] Length = 371 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 37/350 (10%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L + ++ +VGGAVRD L+ + DID+ T P+ +MRIFS K+I + Sbjct: 6 LIDRLEEEGFETYLVGGAVRDRLLGKEIHDIDLTTRARPNDIMRIFSD--LKLIDIGKKF 63 Query: 78 GTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTIK+I + K ++IT+ R++ D R+ ++ F+ + D RRDFTINA+ ++G Sbjct: 64 GTIKVIYKSKEYEITSFRAESSYKDKRHPDQISFSNTIEEDLKRRDFTINAMAQ-RKGDF 122 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG DL + I+ +G+ + RI EDYLR LR RF + +I+ + A Sbjct: 123 IDLFGGKKDLERKIIRAVGNPYERIEEDYLRALRAVRFATVL-DFSIEDNLKDAIKNMAG 181 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 + +S ERI E++K+L AKNP I + + IF +V+++ + Sbjct: 182 HIDEISKERIRDEVDKILLAKNPSRGIRLLDELNLLAYIFPEVKKMVGFDQHSSHHNLDL 241 Query: 256 FEWKIDSL--------LRFIVLISWQDK----------------------KSILSMAKKF 285 F+ + L R L K K I K Sbjct: 242 FDHTMKVLENCPSNLKTRMGALFHDTGKIDTFFLDENGEGRFFGHQEISEKIIRKRLKIL 301 Query: 286 SLPREIRYFLISFFNCNF-NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 P++ + N T + ++KL G++ + + A Sbjct: 302 KYPKKFIEDTSLLVQRHMDNTNTYTKKSVRKLLRKVGEENIYDLFDLQRA 351 >gi|271970534|ref|YP_003344730.1| hypothetical protein Sros_9369 [Streptosporangium roseum DSM 43021] gi|270513709|gb|ACZ91987.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 479 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 89/452 (19%), Positives = 167/452 (36%), Gaps = 59/452 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + L + + +VGG+VRD L+ D+D+ T P+ V+ + + Sbjct: 25 ADELGELFSARGYQIALVGGSVRDVLLGRIGNDLDLTTDARPETVLELIRDWADSIWTIG 84 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I +GT+ + +ITT RS+ R VV+ + D RRDF +NA+ Sbjct: 85 IDFGTVGVRKGNWLLEITTYRSESYDPKSRKPDVVYGDTLEGDLARRDFAVNAMALRLPS 144 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GGL+DL + ++ +D LR+LR RF + +D A Sbjct: 145 REFVDPHGGLDDLHAKVLRTPALPERSFDDDPLRMLRAARFASQLA-FTVDPAAFAAMTA 203 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 + ++I+S+ERI E+NKL+ +P + + + G+ + ++ ++ L+ Sbjct: 204 MAERIEIVSAERIRDELNKLICGDHPREGLKVLVDSGLASHVLPELPKLRLEIDEHHRHK 263 Query: 245 -----QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS------------------M 281 L + +A + E D +LR+ L+ K + Sbjct: 264 DVYEHTLIVLEQAIDLEENGPDRILRWAALLHDVGKPKTRRHEPGGRVSFHHHEMVGAQL 323 Query: 282 AKK----FSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFYLYG 321 AKK P+++ + + P +++L L Sbjct: 324 AKKRMSELKFPKDVVADVSRLVELHLRFHGYGTGEWTDSAVRRYVRDGGPLLERLHKLTR 383 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + AL T+ + L+D K L G+++ G+PPG Sbjct: 384 ADCTTRNKRKAQALSR---TYDQLEERIARLADEEELGKIRPELDGNEIQALLGVPPGPV 440 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +G ++ + +E LR+ Sbjct: 441 IGRAYKFLLDMRLDKGV-IGKEAATEALRQWA 471 >gi|262067034|ref|ZP_06026646.1| poly(A) polymerase [Fusobacterium periodonticum ATCC 33693] gi|291379243|gb|EFE86761.1| poly(A) polymerase [Fusobacterium periodonticum ATCC 33693] Length = 451 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 100/439 (22%), Positives = 179/439 (40%), Gaps = 49/439 (11%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 I IL LN+ K IVGGA+RD L++L +DID T + + + +FS+ K T Sbjct: 14 IEILRKLNEYG-KGYIVGGAIRDILLDLEPKDIDFTTNLPYETLKDLFSEYNPK--ETGK 70 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD-------GRYAKVVFTRDWKADSLRRDFTINALY 128 ++G ++I ++I R D + KV F D K D RRDF+INA+ Sbjct: 71 AFGVLRIRVNDTEYEIAKFREDNYEEKDGLKIVPEENKVDFVEDIKEDLTRRDFSINAMA 130 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 ++ ++D G D+ N+ I F+G+A RI+ED LRILR FRF + G ++ + + Sbjct: 131 YNEVDGIVDLYNGQKDIENKIINFVGNAEERIIEDPLRILRAFRFMSRLG-FSLSENTIE 189 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K K L + ERI E +KLL +N N + M + + + I + + Sbjct: 190 AIKKQKNLLTSIPEERITMEFSKLLLGENVKNTLTAMKDTEVLELIIPEFKATYDFNQYN 249 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSI---------------------- 278 +F D LR+ L+ K + Sbjct: 250 PHHNLDLFNHIISVVSKVPADLELRYTALLHDIAKPLVQTFDEKGIAHYKTHEIVGADMA 309 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 + + LP ++ + + + ++ + KL G ++ ++ A + Sbjct: 310 RDILTRLKLPVKLIDAVEDIIKKHMVLYRDVTDKKFNKLLSEMGYDNLLRLIEHCNADNG 369 Query: 338 N------NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + N + + + + + L G D+V G G ++G I ++ Sbjct: 370 SKNNEVVNPENDLHERLKRAVEKQMQVTVNDLALNGRDLVDMGFK-GTEIGKIKGELLEK 428 Query: 392 WINSSFQLSQEDLHHLLRK 410 +++ +E + +R+ Sbjct: 429 YLSEEIPNEKEAMLAYVRE 447 >gi|300113450|ref|YP_003760025.1| poly(A) polymerase [Nitrosococcus watsonii C-113] gi|299539387|gb|ADJ27704.1| poly(A) polymerase [Nitrosococcus watsonii C-113] Length = 428 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 81/393 (20%), Positives = 142/393 (36%), Gaps = 43/393 (10%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 I+ + +N+L L K + +VGG VRD L+ +D D+ T P+++ +F Sbjct: 15 IISRANISEP-ALNVLYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLF 73 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLR 119 R + + ++ + T R L +GR + D+ R Sbjct: 74 RSCRL----VGRRFRLAHLRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDAWR 129 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDF++NALY D V+DY GG+ DL ++ IGD R ED +R+LR RF A G Sbjct: 130 RDFSVNALYYDIRDFSVVDYTGGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLG 189 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +D + L+ + S R++ EI KL + + +F+ +F Sbjct: 190 -FTLHADSEAPIWELASSLQEIPSARLFEEILKLFLGGCAVQTFELLRRFNLFQWLFPQT 248 Query: 239 Q-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + I L Q +A + F L+ W+ + + ++ + Sbjct: 249 ESCLEEEEQGFPRIFLAQALSNTDARIAAGKPVTPAFLFAALL-WEPVRKLSERYRQEGI 307 Query: 288 P-----REI---------------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 P RE R F + + Q + K+ L A Sbjct: 308 PEFQAIREAAETVLVNQSSHVALPRRFSLPMREIWYLQPRFAYRRGKRPLRLLQHPRFRA 367 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 L ++ C ++ ++ Sbjct: 368 AYDFLLLRVQAGEDQEELCQWWTEFQEVGEKER 400 >gi|152968724|ref|YP_001333833.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893122|ref|YP_002917856.1| poly(A) polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|150953573|gb|ABR75603.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545438|dbj|BAH61789.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 453 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 41/383 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK +S +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119 + ++ + ++ T R G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGHTTDRVTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLN 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I + + L + R++ E+ KLL+A + + +F+ +F + Sbjct: 210 -MTISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYSLFQPLFPTI 268 Query: 239 QEISLDQ--------LSQVIEAEQV---FEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ +SQV++ + +++ F V+ + ++ +A++ L Sbjct: 269 TRYFTERGDSPMERIISQVLKNTDTRIHNDMRVNPAFLFAVMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALH------- 336 + L + +TL+IP+ + + + ++ + K L Sbjct: 329 AYYDAFALAMNDVLDEACRTLAIPKRITTLIRDIWQLQLRMSRRQGKRAWKLMEHPKFRA 388 Query: 337 -YNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 389 AYDLLELRAGAENNHELQRLTKW 411 >gi|325845057|ref|ZP_08168373.1| tRNA adenylyltransferase [Turicibacter sp. HGF1] gi|325488933|gb|EGC91326.1| tRNA adenylyltransferase [Turicibacter sp. HGF1] Length = 386 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 96/400 (24%), Positives = 175/400 (43%), Gaps = 37/400 (9%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 +L+ L + ++ VGG VRD L+ + DIDI T+ PD V+ +F KT I T I + Sbjct: 10 VLNRLIENGYEAYFVGGMVRDRLLGRDIYDIDITTSAKPDVVIGLFEKT----IQTGIKH 65 Query: 78 GTIKIICRKKYFDITTLR-SDLITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GT+ ++ ++TT R + D R +V FT D RRDFT+NA+ G + Sbjct: 66 GTVTVMIEGIPVEVTTFRVEEAYEDFRRPSEVRFTSSLIEDLKRRDFTVNAIAESIDGTL 125 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D GL DL NR IK +G+A R +ED LR+LR RF + G ++ + A + Sbjct: 126 EDPFHGLKDLSNRQIKAVGEAKERFIEDPLRMLRGLRFMSKLG-FELEDETSKAIGEVGA 184 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI--FLDVQEISLDQLSQVIEAE 253 ++ +S ERI EI ++ + L A + + + I F +++ S L+++ E Sbjct: 185 LIEHISKERIKKEIEGMVSGEFSLKAFNLLIHTPLCDSITYFKELKRYSSSNLARLEEGV 244 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 ++F + + + K + + + + C Q Sbjct: 245 ELFA------------LIGLTVEEMEDYLKAWPFSNVEKRMIKAIRECYDKQLP-----P 287 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-LSDIIHWKKPLFPLTGDDVVK 372 + + Y Y + LALHY+ + + + + L ++ + + D+++ Sbjct: 288 QYIQYKYKED---------LALHYHRIQNVLKQSVEKFELRELPITDRKELAIEVADIIQ 338 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 P G + +L + E + + + L + +++L Sbjct: 339 CINHPKGPWLSQLLEALEFEVVMGTLENEVVSLRNYIQQL 378 >gi|238759902|ref|ZP_04621057.1| Poly(A) polymerase [Yersinia aldovae ATCC 35236] gi|238701886|gb|EEP94448.1| Poly(A) polymerase [Yersinia aldovae ATCC 35236] Length = 448 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 76/393 (19%), Positives = 148/393 (37%), Gaps = 45/393 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 19 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 77 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 78 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNI 133 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+L Sbjct: 134 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKAGIIRLIGSPETRYREDPVRML 193 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + + + + L+ + R++ E KLL++ + + Sbjct: 194 RAVRFAAKL-DMALSPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 252 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKS 277 +F+ +F + ++ +E EQV + +++ F ++ + + Sbjct: 253 QLFQPLFPLIARHFTEEHDSPMERILEQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEH 312 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVM 325 + ++ L + L + ++L+IP+ +L G + Sbjct: 313 AQKLTQESGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAH 372 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 373 KLMEHPKFRAAYDLLLLRSEVEKNHELQRLAQW 405 >gi|206578248|ref|YP_002240384.1| poly(A) polymerase [Klebsiella pneumoniae 342] gi|288937089|ref|YP_003441148.1| poly(A) polymerase [Klebsiella variicola At-22] gi|290512511|ref|ZP_06551877.1| poly(A) polymerase [Klebsiella sp. 1_1_55] gi|206567306|gb|ACI09082.1| poly(A) polymerase [Klebsiella pneumoniae 342] gi|288891798|gb|ADC60116.1| poly(A) polymerase [Klebsiella variicola At-22] gi|289774852|gb|EFD82854.1| poly(A) polymerase [Klebsiella sp. 1_1_55] Length = 453 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK +S +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119 + ++ + ++ T R G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGHTTDRVTSQQGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKL- 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E+ KLL+A + + +F+ +F + Sbjct: 209 DMRISPETAEPLPRLATLLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYNLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ +E QV + +++ F V+ + ++ +A++ L Sbjct: 269 TRYFTERGDSPMERIISQVLKNTDNRIHNDMRVNPAFLFAVMFWYPLLETAQKIAQESGL 328 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + +TL+IP+ Sbjct: 329 AYYDAFALAMNDVLDEACRTLAIPK 353 >gi|68537183|ref|YP_251888.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium K411] gi|68264782|emb|CAI38270.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium K411] Length = 547 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 86/483 (17%), Positives = 165/483 (34%), Gaps = 80/483 (16%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D DL+ + +VGG+VRD+L+ D+D T P ++ I + V Sbjct: 62 DRDLLPLTQAFQDAGHSLYLVGGSVRDALLGRLSHDLDFTTDARPQAIVDIVTPLAETVW 121 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA- 129 T I YGT+ + + + +ITT R+D R +V F D +RRDF NA+ Sbjct: 122 DTGIEYGTVSALVKGQILEITTFRADQYDGQSRNPEVSFGDSLDGDLIRRDFRANAIALE 181 Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 D ++ D +GGL DL+ + +D LR+LR RF + E + Sbjct: 182 LSPDGNHQLRDPLGGLEDLQAGVLDTPDSPEISFNDDPLRMLRACRFVSQL-EFGVTKRV 240 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245 A + + ++ ER+ E+NKL+ P + M G+ + ++ + L Q Sbjct: 241 KEAMAAMSEQISRITVERVAVELNKLMLGAAPWVGLDLMVETGLADHVLPELPALKLTQD 300 Query: 246 ---------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------- 281 L + E + LR L+ K + Sbjct: 301 EHRQHKDVYWHSLKVLRNAVNLEAERGLEPSLELRMAALLHDIGKPDTRAFTESGAVTFH 360 Query: 282 -------------AKKFSLPREIRYFLISFFNCNF------------------------- 303 +K ++ + + Sbjct: 361 QHEVVGARITRRRLRKLKYSKQHVQDIGQLVFLHMRFHGYADTQGKGQNQDARRGAGEKD 420 Query: 304 -NQKTLSIPEIKKLFYLYGDKVMIAKLKIFL--------ALHYNNLTHQDTCFILQVLSD 354 N+ T + +++ G+ + + L + T+ + ++ L + Sbjct: 421 NNESTWTDSAVRRYVNDAGELLPLLHLLVRADCTTRNQRKAQRLQRTYDNLEKRIEQLQE 480 Query: 355 IIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 L G+++++ + PG VG + K+ ++ + +ED L++ Sbjct: 481 QEDLAAVRPDLDGNEIMQILDLKPGPDVGKAWAYLKELRLDRG-PMEREDAIAALKQWWG 539 Query: 414 SSQ 416 + Sbjct: 540 EQK 542 >gi|269215861|ref|ZP_06159715.1| polyA polymerase family protein [Slackia exigua ATCC 700122] gi|269130811|gb|EEZ61887.1| polyA polymerase family protein [Slackia exigua ATCC 700122] Length = 455 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 92/440 (20%), Positives = 167/440 (37%), Gaps = 48/440 (10%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D+ +L LL + +VGG VRD+L D+D+AT+ V R+ +V T Sbjct: 12 DVETLLDLLEGTGASAWVVGGYVRDALAGDDAHDVDVATSARWQDVARVCVDAGMRVYET 71 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 ++GT+ + ++ ++TT R D D R+ V F + D RRDFT NAL Sbjct: 72 GTAHGTVSVNTGRRIVEVTTYRIDGPYEDARHPASVSFVDSIELDLARRDFTFNALAYHP 131 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + ++D G +DL+ I+ +GD R ED LRILR RF + +G +D A Sbjct: 132 ERGLLDPYDGCSDLKGGIIRTVGDPMKRFREDPLRILRAVRFASRFG-FAVDDRTESAMR 190 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNA-IVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + + +++ERI +E +++L + NA I + G+F + + Sbjct: 191 RLAPLIGGVAAERIENEFSRMLLGDHACNAIIEWIDVIGVF---IPEALPMKGFDQRTPY 247 Query: 251 EAEQVFEWKIDS--------LLRFIVLISWQDKKSILSM--------------------- 281 V E + + R+ K S+ ++ Sbjct: 248 HIYDVLEHSAHAVGAAPARRITRYAAFFHDIGKPSVFTVDDEGIGHAKGHPQAGEAIARK 307 Query: 282 -AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI--------- 331 ++ L + + + + + ++++ G V + + + Sbjct: 308 ALQRLRLKATDIDAICTLVALHQDIVPATPRGVRRMLNRMGGDVTLFRELLDVKRADAAA 367 Query: 332 --FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 + + VL D ++ + G+DV+ GIP G VG L Sbjct: 368 HAPDHRDRGAQADEVESVLEDVLKDRSAFRIADLQIDGNDVMACGIPCGPGVGAALRAAL 427 Query: 390 QEWINSSFQLSQEDLHHLLR 409 E ++ ++ L L Sbjct: 428 DEVMDDRIPNERDALLSFLD 447 >gi|254823068|ref|ZP_05228069.1| PcnA [Mycobacterium intracellulare ATCC 13950] Length = 480 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 84/452 (18%), Positives = 165/452 (36%), Gaps = 55/452 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H L + S + +VGG+VRD+L+ D+D T P++V I + + Sbjct: 21 HAPVLAELGSAFEGAGHQLYLVGGSVRDALLGRLSPDLDFTTDARPEQVQNILRRWADNL 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GT+ + +ITT R+D R V + + D +RRDFT NA+ Sbjct: 81 WDTGIQFGTVGVGKGDHRLEITTFRADTYDQVSRNPDVQYGDRLEDDLVRRDFTANAMAV 140 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 G+ +D +GGL LR R + +D LR+LR RF + G + Sbjct: 141 RITPEGPGEFLDPLGGLAALRERVLDTPAAPEVSFGDDPLRMLRAARFVSQLG-FTVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISL 243 A + L +S+ER+ +E++KL+ +P I + G+ + + ++ ++++ Sbjct: 200 VRAAIEQMASQLGRISAERVAAELDKLVLGDDPTAGIDLLVQTGMGEVVLPEIGGMQMAI 259 Query: 244 DQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------- 277 D+ Q + +A + + D +LR+ L+ K + Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEANGGVSFHHH 319 Query: 278 -------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIA 327 + + +++ + + + Y+ ++ Sbjct: 320 EVVGAKMVRKRLRALKYSKQMVEDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIP 376 +L + + + + + L G+ +++ GIP Sbjct: 380 RLHKLVRADCTTRNKRRAARLQSSYDRLETRIAELAAQEDLARVRPDLDGNQIMELLGIP 439 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G +VG K+ + + E LL Sbjct: 440 AGPQVGEAWRFLKELRLERGPLDTDEATAELL 471 >gi|258647149|ref|ZP_05734618.1| polyA polymerase family protein [Prevotella tannerae ATCC 51259] gi|260853114|gb|EEX72983.1| polyA polymerase family protein [Prevotella tannerae ATCC 51259] Length = 479 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 81/436 (18%), Positives = 161/436 (36%), Gaps = 57/436 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP--TSISYGTIKIICR 85 + +VGG VRD + DIDI + +K + ++GT ++ Sbjct: 32 ECYVVGGYVRDLFLERPTNDIDIVVVGSGIAMAEALTKRLGRAAHLSVFKNFGTAQVKYH 91 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + + R + + +V + D +RRDFTINAL G+++D G Sbjct: 92 HQEIEFVGARRESYSHDSRKPIVEDGTLEDDQMRRDFTINALAVCLNTARYGELVDPFDG 151 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL + ++ D +D LR++R RF + ID + A + + L I+S Sbjct: 152 LWDLEDGLLRTPTDPDITFSDDPLRMMRCVRFATQLNFR-IDDETFAALERNAERLSIIS 210 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI E+NK++ A P V + G+ I ++ + + + F ++ Sbjct: 211 GERIIEELNKIMRAPLPSIGFVELQRSGLLPIILPELSALDNVETRNGKSHKNNFYHTLE 270 Query: 262 SL-----------LRFIVLISWQDKKSIL----------------------SMAKKFSLP 288 L LR+ L+ K ++ ++ LP Sbjct: 271 VLDNVARRTDNVWLRWAALLHDIGKAKTKRWEPAVGWTFHNHNFVGEKMTPALFRRLKLP 330 Query: 289 REIRYFLIS------FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 + R + ++ +++L + GD + + + A + Sbjct: 331 LDERMKYVKKMVGLHMRPIVIADDIVTDSAVRRLLFDAGDDI-DDLMLLCEADVTSKNAQ 389 Query: 343 QDTCFI---------LQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEW 392 + F+ L + + + P+TGD+++ ++ +PP ++VG + K Sbjct: 390 RKRNFLNNFKLVREKLVAIEEKDRIRNFQPPVTGDEIMRRFSLPPCREVGLLKAALKDAI 449 Query: 393 INSSFQLSQEDLHHLL 408 ++ S E+ + Sbjct: 450 LDGKVPNSYEEALAFV 465 >gi|311746152|ref|ZP_07719937.1| polyA polymerase family protein [Algoriphagus sp. PR1] gi|126576375|gb|EAZ80653.1| polyA polymerase family protein [Algoriphagus sp. PR1] Length = 483 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 86/457 (18%), Positives = 171/457 (37%), Gaps = 60/457 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQD---IDIATTILPDRVMRIFSKTRYKVIPT 73 + ++ +VGG VRD ++N D ID + +K +P Sbjct: 15 KVAKAAQDLGLEAYVVGGYVRDLILNRKKSDKRDIDFTCVGSGIELAEEVAKNFDYHVPV 74 Query: 74 --SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 ++GT + + + R + +V + D RRDFTINA+ Sbjct: 75 SVFKNFGTAMVKLEEWELEFVGARKESYRSESRKPIVEDGTLQEDLERRDFTINAMAISL 134 Query: 132 Q----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 G ++D GL DL+ +TI+ + +D LR+LR RF A + +ID D Sbjct: 135 HASNYGDLLDPFEGLVDLKRKTIRTPLEPSITFSDDPLRMLRAIRFAAQL-DFDIDPDTF 193 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQL 246 A + L+I+S ERI E+NK++ P ++ + E F ++ E+ +D + Sbjct: 194 YAITQNAHRLRIISGERIIDELNKIMLVPKPSYGFKLLFASKLLHEFFPEMVELQGVDSV 253 Query: 247 SQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSILSMAK------------- 283 + + D LR+ ++ K + K Sbjct: 254 DDKSHKDNFYHTLQVLDNVSVMSEDLWLRWAAVLHDIAKPATKRFNKKVGWTFHGHEDKG 313 Query: 284 ---------KFSLPREIR-YFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAK 328 + LP + R F+ + + ++ +++L + GD + + Sbjct: 314 ARMTPGIFRRLKLPMDDRMKFVQKLVRLHLRPIALVKDEVTDSALRRLLFDAGDDI-DSL 372 Query: 329 LKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-YGIPPG 378 +K+ A + + ++ L + + + P++G+++++ +G+ P Sbjct: 373 MKLCRADVTSKNNRRVKRYLENFDKVEKKLMEVEEKDQVRNFQPPISGEEIMETFGLSPS 432 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 K VG I K+ + Q + L+ ++ S Sbjct: 433 KIVGEIKEEIKEAILEGKIQNKPDKARELMYEIAKSK 469 >gi|294786232|ref|ZP_06751486.1| tRNA adenylyltransferase [Parascardovia denticolens F0305] gi|294485065|gb|EFG32699.1| tRNA adenylyltransferase [Parascardovia denticolens F0305] Length = 485 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 78/444 (17%), Positives = 157/444 (35%), Gaps = 63/444 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++ + ++ +VGG VRD L+ D+D T+ P+ + K Sbjct: 21 ALDLGEVFSQAGFDLALVGGPVRDLLLGRDPHDLDFCTSAKPEEFEPLLRKWGDGFWDMG 80 Query: 75 ISYGTIKIICR-----KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY 128 +GT+ + + + ++TT RS++ D R +V + + D RRDFT+N++ Sbjct: 81 RKFGTLGTLKKLADGTEVSIEVTTYRSEVYDPDSRKPEVDYGDSLEGDLSRRDFTVNSMA 140 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + + +D GGL DL R ++ + +D LR++R RF A + I D Sbjct: 141 IRLPEMEFVDVFGGLEDLDRRILRTPVEPEQSFSDDPLRMMRAVRFVAQL-DFRISLDTS 199 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD--- 244 A + ++I+S+ER+ E+ KLL + +P + ++ G+ + ++ + ++ Sbjct: 200 AAIARMADRIEIVSAERVRDELVKLLLSAHPRKGLENLVASGLADYVLPELPALQMEMDP 259 Query: 245 -------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM------- 281 L + I E E D LR ++ K Sbjct: 260 QHHHKDVFEHTMKVLERAIALETDAEGPVPAPDLELRLAAVMHDVGKPRTRRFEPDGKVS 319 Query: 282 ---------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDK 323 K I + N + Y+ Sbjct: 320 FYHHDAVGAKITKRRLKALHFDHHIVNDVADLVNMHLRFHGYVDEPWSDSAVRRYVKDAG 379 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK- 372 + +L + Q + ++ + L GD +++ Sbjct: 380 PLYHRLNRLTRADATTQNKRKALAFEQAMDELERRVEDLKKKEDFAAIRPDLNGDQIMQI 439 Query: 373 YGIPPGKKVGNILVHCKQEWINSS 396 G+ PG++VG H + +++ Sbjct: 440 LGLAPGREVGKAYKHMLEFRMDNG 463 >gi|330900398|gb|EGH31817.1| poly(A) polymerase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 363 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274 >gi|238918730|ref|YP_002932244.1| poly(A) polymerase I [Edwardsiella ictaluri 93-146] gi|238868298|gb|ACR68009.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 456 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 19/246 (7%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + + + + +L LNK ++ +VGG VRD L+ +D D+ T P++V ++F Sbjct: 26 TISRQQIS-ENALKVLYRLNKSGYEAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLF 84 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTR 111 R + ++ + ++ T R +G + Sbjct: 85 RNCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEHANEGKNIAQQGKNGMLLRDNVYG 140 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + + D+ RRDFTIN+LY V DY GGLNDL I+ IGD R ED +R+LR Sbjct: 141 NIEEDAQRRDFTINSLYYSVADFSVRDYTGGLNDLHAGQIRLIGDPETRYREDPVRMLRA 200 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A + +I+ + L+ + + R++ E KLL+A + + + Sbjct: 201 VRFAAKL-QMSINPETAAPIAHLASLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQL 259 Query: 231 FKEIFL 236 F+ +F Sbjct: 260 FQPLFP 265 >gi|310288293|ref|YP_003939552.1| tRNA nucleotidyltransferase [Bifidobacterium bifidum S17] gi|311065154|ref|YP_003971880.1| RNA nucleotidyltransferase [Bifidobacterium bifidum PRL2010] gi|309252230|gb|ADO53978.1| tRNA nucleotidyltransferase [Bifidobacterium bifidum S17] gi|310867474|gb|ADP36843.1| RNA nucleotidyltransferase [Bifidobacterium bifidum PRL2010] Length = 475 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 90/467 (19%), Positives = 165/467 (35%), Gaps = 69/467 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVI 71 + I + L + +VGG VRD L++ D+D T+ PD I R Sbjct: 12 PEAIELGHLFAARGYELALVGGPVRDLLLHRRSHDLDFCTSAHPDEFESILRHWGRDGFW 71 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R++ +ITT RSD + R +V + + D RRDFT+N Sbjct: 72 DMGRKFGTLGAMRRREDGTEVKVEITTYRSDTYDPESRKPEVSYGDSLEGDLSRRDFTVN 131 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ Q + +D GG +DL ++ D + +D LR++R RF A G +I Sbjct: 132 AMALRVPQLEFVDPFGGASDLAKGVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIAP 190 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + I+S+ER+ E+ KLL + P + + G+ +F ++ + L+ Sbjct: 191 DTAAAISDMTDRIDIVSAERVRDELTKLLLSDRPRAGVEALVESGLADIVFPEIPALQLE 250 Query: 245 ----------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---- 281 L + I E E D LR L K Sbjct: 251 IDEHHRHKDVFEHTMIVLDRAIALETGPEGPVPAPDLTLRLAALTHDIGKPKTRRFEPGG 310 Query: 282 ------------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFY 318 K + + N + ++ + +++ Sbjct: 311 KVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNLHLRFHGYVEEPWTDSAVRRYVK 370 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368 G + +L + + ++ + L + G+ Sbjct: 371 DAGP--LYERLNRLTRADATTQNRRKAMVFSSAMDEMEQRVRDLKEKEDFDAIRPDIDGN 428 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +++ GI PG +VG H + +++ + + L++ AS Sbjct: 429 EIMTILGIAPGPEVGRAYKHMLEYRLDNG-PVDHDTAVAELKRWHAS 474 >gi|209696020|ref|YP_002263950.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio salmonicida LFI1238] gi|208009973|emb|CAQ80291.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio salmonicida LFI1238] Length = 441 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 20/246 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L L+ + +VGG VRD ++ +D DIAT P+++ ++F Sbjct: 13 ISRKDLSD-NALKVLYRLSNAGYDAYLVGGGVRDIILGQEPKDFDIATNATPEQIKKLFR 71 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-------------DGRYAKVVFTR 111 R + I+ + ++ T R +G + Sbjct: 72 NCRL----IGRRFRLAHILFGRDVIEVATFRGHHKEEESEKKNISSQSKEGMLLRDNVYG 127 Query: 112 DWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTINA+Y + + DY G+ DL+N ++ IGD R ED +R+LR Sbjct: 128 TVEEDAQRRDFTINAMYYNIADYSIHDYANGIEDLKNGVVRLIGDPETRYREDPVRMLRA 187 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A + I + ++ L+ + + R++ E KLL+A LN + + + Sbjct: 188 VRFAAKL-DMTICNKTAEPMVELSPLLRDIPAARLFEESLKLLQAGKGLNTYLMLRKFNL 246 Query: 231 FKEIFL 236 F+++F Sbjct: 247 FQQLFP 252 >gi|296167162|ref|ZP_06849569.1| polyA polymerase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897484|gb|EFG77083.1| polyA polymerase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 478 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 168/453 (37%), Gaps = 55/453 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H L + S + + +VGG+VRD+++ D+D T P++V I + + Sbjct: 19 HAPMLRELGSAFDAAGHELYLVGGSVRDAVLGRLSPDLDFTTDARPEQVQEILRRWADNL 78 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GT+ + +ITT R+D R +V F + D +RRDFT NA+ Sbjct: 79 WDTGIEFGTVGVGKGGNRLEITTFRADAYDRVSRKPEVQFGERLEDDLVRRDFTANAMAV 138 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 G+ +D +GGL LR R + +D LR+LR RF A G + Sbjct: 139 RITPEGPGEFLDPLGGLAALRQRVLDTPAAPSVSFGDDPLRMLRAARFVAQLG-FAVAPR 197 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISL 243 A + L +S+ER+ +E++KLL +P++ I + G+ + + +V ++++ Sbjct: 198 VREAIEEMAPELARISAERVAAELDKLLLGDDPVSGIDLLVQTGMGEVVLPEVGGMQMAI 257 Query: 244 DQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------- 279 D+ Q + +A + + D +LR+ L+ K + Sbjct: 258 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEANGGVSFHHH 317 Query: 280 ---------SMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIA 327 + +++ + + + Y+ ++ Sbjct: 318 EVVGAKMTRKRLRALKYSKQMVDDVSQLVYLHLRFHGYGEGKWTDSAVRRYVTDAGPLLP 377 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVKY-GIP 376 +L + + + + + L G+ ++K IP Sbjct: 378 RLHKLVRADCTTRNKRRAARLQASYDRLEARIVELAAQEDLARVRPDLDGNAIMKLLDIP 437 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G +VG K+ + ++E LL Sbjct: 438 AGPQVGEAWRFLKELRLERGPLTAEEATAELLD 470 >gi|15595051|ref|NP_212840.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi B31] gi|2688624|gb|AAC67039.1| polynucleotide adenylyltransferase (papS) [Borrelia burgdorferi B31] Length = 410 Score = 249 bits (637), Expect = 6e-64, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 172/394 (43%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLLKDLERRDFTINAIAMDIFNFNIIDCYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R+ ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNPNKRLEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ ++VI+ + + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKVIKKIALLDKNKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRGIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I ++ FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL + I + ++ L ++ L Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTL 402 >gi|313806788|gb|EFS45286.1| tRNA adenylyltransferase [Propionibacterium acnes HL087PA2] gi|313817579|gb|EFS55293.1| tRNA adenylyltransferase [Propionibacterium acnes HL046PA2] gi|313821595|gb|EFS59309.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA1] gi|313824460|gb|EFS62174.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA2] gi|313826807|gb|EFS64521.1| tRNA adenylyltransferase [Propionibacterium acnes HL063PA1] gi|314926209|gb|EFS90040.1| tRNA adenylyltransferase [Propionibacterium acnes HL036PA3] gi|314961597|gb|EFT05698.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA2] gi|314979986|gb|EFT24080.1| tRNA adenylyltransferase [Propionibacterium acnes HL072PA2] gi|315083014|gb|EFT54990.1| tRNA adenylyltransferase [Propionibacterium acnes HL027PA2] gi|315086547|gb|EFT58523.1| tRNA adenylyltransferase [Propionibacterium acnes HL002PA3] gi|315087950|gb|EFT59926.1| tRNA adenylyltransferase [Propionibacterium acnes HL072PA1] gi|327334060|gb|EGE75775.1| tRNA adenylyltransferase [Propionibacterium acnes HL096PA3] gi|327444535|gb|EGE91189.1| tRNA adenylyltransferase [Propionibacterium acnes HL013PA2] gi|328758040|gb|EGF71656.1| tRNA adenylyltransferase [Propionibacterium acnes HL020PA1] gi|332676693|gb|AEE73509.1| CCA-adding enzyme [Propionibacterium acnes 266] Length = 507 Score = 249 bits (637), Expect = 6e-64, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFAQASHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ K D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 351 Query: 282 -------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ GI PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMAILGIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTPDEAKNALL 499 >gi|312149496|gb|ADQ29567.1| polynucleotide adenylyltransferase [Borrelia burgdorferi N40] Length = 410 Score = 249 bits (637), Expect = 6e-64, Method: Composition-based stats. Identities = 102/394 (25%), Positives = 174/394 (44%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD ++N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLMLNKQPYDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ + +IDY G Sbjct: 76 NKKIFEITTYRIEKEYENNRAPKQVEYTKNLIKDLERRDFTINAIAMNIFNFNIIDYYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R+ ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNPNKRLEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ ++VI+ + + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKVIKKIALLDKNKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + + N ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I ++ FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKNKRYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL + I + ++ L ++ L Sbjct: 369 NKNIGKILNMLLRCVIENPKLNTKNYLIKKIKTL 402 >gi|77461030|ref|YP_350537.1| Poly(A) polymerase, PcnB [Pseudomonas fluorescens Pf0-1] gi|77385033|gb|ABA76546.1| putative polynucleotide adenylyltransferase [Pseudomonas fluorescens Pf0-1] Length = 466 Score = 249 bits (637), Expect = 6e-64, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 124/307 (40%), Gaps = 38/307 (12%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K +NI+ L ++ +VGG VRD L+ ++ +D D+AT+ P++V F Sbjct: 34 QKAQFSRYAVNIVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNA 93 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRD 112 R + + I ++ ++ T R++ GR + Sbjct: 94 RI----IGRRFKLVHIHFGREIIEVATFRANHPQNEDDEDSNQSSRNESGRILRDNVYGT 149 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFTINALY D +++DY G++D+RN I+ IGD R ED +R+LR Sbjct: 150 LEEDAQRRDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAV 209 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A I+ + + L+ + S R++ E+ KL + + + + +F Sbjct: 210 RFAAKLN-FGIEKHTVQPIRELAPMLREIPSARLFEEVLKLFLSGHGAITFEMLVDLQLF 268 Query: 232 KEIFLDVQEISLDQLSQVIEAEQVF--------------EWKIDSLLRFIVLISWQDKKS 277 +F S D L E + F L+ Sbjct: 269 APLFP----ASADALEHNPEYTHTLISEALTNTDLRIKQNKPVTPAFLFAALLWPALPAR 324 Query: 278 ILSMAKK 284 +L + ++ Sbjct: 325 VLRLQER 331 >gi|113461167|ref|YP_719236.1| poly(A) polymerase [Haemophilus somnus 129PT] gi|112823210|gb|ABI25299.1| poly(A) polymerase [Haemophilus somnus 129PT] Length = 457 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 29/314 (9%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKT 66 + ++++ L++ ++ IVGG +RD L+ +D D+AT P++V IF + Sbjct: 34 PRMISRNALSVVEKLHRNGYEAYIVGGCLRDLLLGKKPKDFDVATNAKPEQVQAIFQRQC 93 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKA 115 R + I+ + ++ T R+ + G + + Sbjct: 94 RL----VGRRFRLAHIMFGRDIIEVATFRAAHSDNHNERQAKQNNAGMLLRDNVYGTIEQ 149 Query: 116 DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT+NA Y + Q + DY G+ DL+ ++ IGD R ED +R+LR RF Sbjct: 150 DAERRDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSIRFM 209 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A +D K LK + R++ E KLL+A + + G+F ++ Sbjct: 210 AKLDMF-LDKPSQEPIKKMAHLLKNIPPARLFDESVKLLQAGYGIKTYQLLREYGLFDQL 268 Query: 235 FLDVQEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAK 283 F + D+ E E+V + I+ F + ++ + ++ Sbjct: 269 FPTLTPYFTDKADSFAEKMIITALTSTDERVADNLPINPAFLFAAFFWYPLREKVETLKN 328 Query: 284 KFSLPREIRYFLIS 297 + S Y L S Sbjct: 329 EGSFNNHDAYALAS 342 >gi|262367096|gb|ACY63653.1| poly(A) polymerase [Yersinia pestis D182038] Length = 351 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 62 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFR 120 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 121 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 176 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 177 FGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 236 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I + + L+ + R++ E KLL++ + + Sbjct: 237 RAVRFAAKL-DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 295 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 296 QLFQPLFPLIARNFTEQHDSPMER 319 >gi|23465237|ref|NP_695840.1| RNA nucleotidyltransferase [Bifidobacterium longum NCC2705] gi|46190719|ref|ZP_00206546.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Bifidobacterium longum DJO10A] gi|189440311|ref|YP_001955392.1| tRNA nucleotidyltransferase [Bifidobacterium longum DJO10A] gi|239622867|ref|ZP_04665898.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133644|ref|YP_004000983.1| pcnb [Bifidobacterium longum subsp. longum BBMN68] gi|322692105|ref|YP_004221675.1| RNA nucleotidyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|23325867|gb|AAN24476.1| probable RNA nucleotidyltransferase [Bifidobacterium longum NCC2705] gi|189428746|gb|ACD98894.1| tRNA nucleotidyltransferase [Bifidobacterium longum DJO10A] gi|239514864|gb|EEQ54731.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772903|gb|ADQ02391.1| PcnB [Bifidobacterium longum subsp. longum BBMN68] gi|320456961|dbj|BAJ67583.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp. longum JCM 1217] Length = 471 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 177/468 (37%), Gaps = 67/468 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D ++ P++ I + + Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G + I Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-KKSILSMAKKFSL-------PREIRYFL- 295 Q+ + + VFE + L R I L + D + + + P+ R+ Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFESG 304 Query: 296 --ISFFNCNFNQKTLSIPEIKKLFYLY--------------------------------- 320 +SF + + ++ +K L + + Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364 Query: 321 -GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + Q + ++ + L L G++ Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++ G+ PG +G H + +++ + + L++ A Q Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNG-PVDHDVAVEELKRWYAEIQ 471 >gi|283783928|ref|YP_003363793.1| poly(A) polymerase [Citrobacter rodentium ICC168] gi|282947382|emb|CBG86927.1| poly(A) polymerase [Citrobacter rodentium ICC168] Length = 472 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 148/383 (38%), Gaps = 41/383 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKL- 226 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL++ + + +F+ +F + Sbjct: 227 DMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQSGYGYETYLKLREYSLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV + +++ F + + + +A++ L Sbjct: 287 TRYFTENGDSPMERIIAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPLLEMAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALH------- 336 + L + ++L+IP+ + + + ++ + K L Sbjct: 347 AYYDAFALAMNEVLDEACRSLAIPKRLTALTRDIWQLQLRMSRRQGKRAWKLMEHPKFRA 406 Query: 337 -YNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 407 AYDLLALRAEAENNPELQRLAQW 429 >gi|289422289|ref|ZP_06424140.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptostreptococcus anaerobius 653-L] gi|289157294|gb|EFD05908.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Peptostreptococcus anaerobius 653-L] Length = 430 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 99/431 (22%), Positives = 187/431 (43%), Gaps = 38/431 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D IL + + ++ +VGG VRDS+M + +D DI T LP+ ++ +F +T I Sbjct: 6 DKGAALILDKIEECGFEAFVVGGCVRDSIMARTPKDWDITTDALPEDIIAMFDRT----I 61 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYA 129 PT I +GT+ ++ + +++TT R D D R + V FTR+ D RRDFTINA+ Sbjct: 62 PTGIKHGTVTVLVGGQAYEVTTYRIDGDYLDSRRPESVEFTRNIVDDLSRRDFTINAMAY 121 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++D GL D++N+ I+ +G+ R ED LRI+R RF A G + I+ Sbjct: 122 SPSRGLVDRFSGLEDIKNKIIRCVGNPDLRFKEDALRIMRAIRFSAQLGFQ-IEESTQKY 180 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF-KEIFLDVQE-------- 240 + L ++S+ERI E+ K++E+ N + ++ N G F + FL + Sbjct: 181 IEENSLRLHLISAERIHDELEKVIESD--PNKVKNLNNLGGFVDKFFLGYRPSDENIGLS 238 Query: 241 ISLDQLSQVIEAE--QVFEWKIDSLL----RFIVLISWQDKKSILSMAKKFSLPREIRYF 294 +D L ++ + +V ID+LL + L + + + + ++ Sbjct: 239 TKIDHLYEIFGDKFIEVNFGNIDNLLLQDIKRAYLFLDMEGQDLEKTMRALRYSKKDIDK 298 Query: 295 LISFFNCNFNQKTLSIPE--------------IKKLFYLYGDKVMIAKLKIFLALHYNNL 340 ++ + + E +K++ +GD + + + N Sbjct: 299 SLAIHGFLNDSSLEYLFEKDGFAHGERDLRIGLKRIMSRFGDLSLAKNAILAKIIQKNLK 358 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 ++ + + G +V+ + G +GN+L + I + Sbjct: 359 ADVYFRVYNDIIESGECFSISQMKIDGRFIVENNLAKGPMIGNLLNEMLEHVIKNPSDNE 418 Query: 401 QEDLHHLLRKL 411 ++ L +L+ + Sbjct: 419 KDRLIEILKNI 429 >gi|269217865|ref|ZP_06161719.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212800|gb|EEZ79140.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 520 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 91/463 (19%), Positives = 165/463 (35%), Gaps = 68/463 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + S+ + +VGG VRD+ + L + D D+ T+ P+ R+ S Sbjct: 35 PAIDELGSIFADAGHEVSLVGGPVRDAFLGLPIHDFDLTTSAPPEITERLLSSWGAATWD 94 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 +GTI + ++TT RSD G R KV F R + D RRDFT+NA+ Sbjct: 95 VGREFGTIGSVRDGVTAEVTTYRSDSYEVGSRKPKVDFGRTLEGDLSRRDFTVNAMAVRL 154 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + +++D GGL+DL ++ A +D LRI+R RF A G ++ D + A Sbjct: 155 PELELVDPCGGLDDLVGGVLRTPVTAVQSFDDDPLRIMRAARFAAQLG-FDVGEDVVSAM 213 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 + + L I+S+ERI +E+ +L+ + P I + G+ + ++ ++ Sbjct: 214 AEMAERLAIVSAERIRAELERLMLSPAPRRGIELLVYTGVADVVLPEIAQLRETVDEHKR 273 Query: 242 -------SLDQLSQVIEAEQVFEWK-------------IDSLLRFIVLISWQDKKSILSM 281 +L + Q I E + D LR L K Sbjct: 274 HKDVYEHTLTVVDQAIALEDPASKEEYEAYLLGGELEGPDLTLRLAALFHDVGKPRTRRF 333 Query: 282 AK----------------------KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 K ++ + + S Sbjct: 334 EKDGSVTFRAHDVVGARMAAKRMAALRFDKQTEKDVARLVELHLRAFGFSEAGWTDSAVR 393 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLT 366 + L + L ++T Q+ + ++ L++ L Sbjct: 394 RFVRDAGDLLPRLMRLIRADVTSQNRRKVGRLQAGNDELAARIRDLAEQEALDAIRPDLD 453 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G +++ G+ PG +VG + + ++ +E LL Sbjct: 454 GARIMEILGLKPGPEVGAARNYLLELRLDEGPLGEEEAERRLL 496 >gi|262195628|ref|YP_003266837.1| tRNA adenylyltransferase [Haliangium ochraceum DSM 14365] gi|262078975|gb|ACY14944.1| tRNA adenylyltransferase [Haliangium ochraceum DSM 14365] Length = 471 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 168/408 (41%), Gaps = 28/408 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 + + L++ +S VGGAVRD+L+ + D D+AT+ P V +F KT + T I + Sbjct: 40 VCARLHEAGHQSVCVGGAVRDALLGRAPGDWDVATSAAPAEVQALFDKT----VDTGIQH 95 Query: 78 GTIKIIC-------RKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALY 128 GT+ ++ R+ ++TT R D +DGR V F + D RRDF INA+ Sbjct: 96 GTVTVMARPASGRGRRLPIEVTTFRGDGSYSDGRRPDSVTFGVPLREDLARRDFVINAMA 155 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D + +ID GG DL I+ +G+ R ED LR++R RF A G +D+ Sbjct: 156 YDPVRRALIDPFGGRRDLARGLIRAVGEPARRFDEDGLRVMRAVRFAAKLG-FALDAATE 214 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD--VQEISLDQ 245 A A L +S ERI SE+ LL A+ + GI +I + +++ + Sbjct: 215 AAIPGALGRLSQVSWERIRSELFALLVARAAAEGLAIAARTGILAQILPELAIEDDADAA 274 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLI-SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 A + D+ LR L+ + + + A++ R L+ Sbjct: 275 CWAQTLARLTATPEDDACLRLCALLWEVGAPRRLEAAARRLKTSNADRARLVGVNTWAPR 334 Query: 305 QKTLS--IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW---- 358 + +++L G + + ++ A + + ++ Sbjct: 335 WRAYRDGDARLRELLAALGRARVPDAIALWRAQAAAEDRGEQAEALRELARRAQAILDAG 394 Query: 359 ---KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 L+G DV++ + PG+ VG +L + + + E Sbjct: 395 HPLATGELALSGGDVMRILDMKPGRAVGLLLEAALARVLVAPALNTPE 442 >gi|303245446|ref|ZP_07331730.1| Polynucleotide adenylyltransferase region [Desulfovibrio fructosovorans JJ] gi|302493295|gb|EFL53157.1| Polynucleotide adenylyltransferase region [Desulfovibrio fructosovorans JJ] Length = 931 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 89/433 (20%), Positives = 165/433 (38%), Gaps = 48/433 (11%) Query: 16 INILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 +IL+LL +VGG VRD L+ D+D+ ++ Sbjct: 471 KDILALLKNAGKLGQKLGYAVYVVGGFVRDVLLKHPNTDVDLVVEGDGIAFAAAMTREMG 530 Query: 69 KVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T ++ + D+ T R + V K D RRDFT+NAL Sbjct: 531 GRYKAHPKFKTAVVVLPSGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNAL 590 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-I 182 D+ G+++D+ G D+++R ++ + +ED RI+R RF +G + Sbjct: 591 AVHLSPDRYGELVDFFGAQRDIKDRVLRVLH--SLSFVEDPTRIVRAIRFSERFGFRIGG 648 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 +D L+ + LS R++ E+ +LE K PL + M++ + I + ++ Sbjct: 649 QTDRLIKNAVRHSFFHRLSGSRVFHELQLILEEKTPLACLRRMHDYKLLAAIHP-LLALT 707 Query: 243 LDQLSQVIEAEQVFEW------KIDS---LLRFIVLISWQDKKSILSMAKKFSLPR---- 289 + + ++E E V W + L+ F+ L S D + + K+ + + Sbjct: 708 PPRETVLMEVENVINWYRLLYIEPQPQAWLVYFLALCSGMDAEQFAVVGKRLNFSKRTAG 767 Query: 290 -------EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 IR FN +++ LS +L++L + L + L Sbjct: 768 DIATLRMRIRETAQGLFNWEYHKGPLS-----ELYFLMEPLPVEGALFLMARNPREPLQK 822 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + ++ + + +TG+D+ GI PG +IL + I+ E Sbjct: 823 YVSLYLTTL-------RGKRLEITGNDLKGIGIAPGPDYTSILRRVRGSVIDGHAPCRAE 875 Query: 403 DLHHLLRKLIASS 415 L R + S Sbjct: 876 QLEMARRLAVGES 888 >gi|113969072|ref|YP_732865.1| poly(A) polymerase [Shewanella sp. MR-4] gi|113883756|gb|ABI37808.1| poly(A) polymerase [Shewanella sp. MR-4] Length = 435 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 17/248 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F Sbjct: 8 ISRKQIS-ENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFR 66 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWK 114 R + I+ + ++ T R +GR + + Sbjct: 67 NCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEID 122 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NALY D + Y GG++DL+ T++ IGD R ED +R+LR RF Sbjct: 123 EDAERRDFTVNALYYDISDYSIRSYGGGMDDLKAGTLRLIGDPETRYREDPVRMLRAVRF 182 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 ID + LK + + R++ E+ KL A + M +F+ Sbjct: 183 ATKL-SMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFEP 241 Query: 234 IFLDVQEI 241 +F V + Sbjct: 242 LFPQVDAL 249 >gi|322690155|ref|YP_004209889.1| RNA nucleotidyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|320461491|dbj|BAJ72111.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 471 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 177/468 (37%), Gaps = 67/468 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D ++ P++ I + + Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G + I Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-KKSILSMAKKFSL-------PREIRYF-- 294 Q+ + + VFE + L R I L + D + + + P+ R+ Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304 Query: 295 -LISFFNCNFNQKTLSIPEIKKLFYLY--------------------------------- 320 +SF + + ++ +K L + + Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364 Query: 321 -GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + Q + ++ + L L G++ Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++ G+ PG +G H + +++ + + L++ A Q Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNG-PVDHDVAVEELKRWYAEIQ 471 >gi|71733402|ref|YP_273137.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553955|gb|AAZ33166.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 491 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 67 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 122 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 123 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 182 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 183 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 241 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 242 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 298 >gi|238761613|ref|ZP_04622588.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638] gi|238700127|gb|EEP92869.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638] Length = 483 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 76/393 (19%), Positives = 145/393 (36%), Gaps = 45/393 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 54 ISRRDISD-NALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 112 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 113 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 168 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+L Sbjct: 169 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRML 228 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L + R++ E KLL++ + + Sbjct: 229 RAVRFAAKL-DMTISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 287 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKS 277 +F+ +F + + +E QV + +++ F ++ + + Sbjct: 288 QLFQPLFPLIARHFTEHHDSPMERILVQVLKNTDYRLHNDKRVNPAFLFAAMLWYPLIEH 347 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVM 325 + ++ L + L + ++L+IP+ +L G + Sbjct: 348 AQKLTQESGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAH 407 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 408 KLMEHPKFRAAYDLLALRAEVENNHELQRLAQW 440 >gi|242240239|ref|YP_002988420.1| poly(A) polymerase I [Dickeya dadantii Ech703] gi|242132296|gb|ACS86598.1| poly(A) polymerase [Dickeya dadantii Ech703] Length = 449 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 20/240 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D DI T P++V ++F R Sbjct: 26 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRL--- 82 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117 + ++ + ++ T R G + + D+ Sbjct: 83 -VGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQQVKNASQQDQNGMLLRDNIFGTIEEDA 141 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDF+IN+LY V DY G+NDLR I+ +GD R ED +R+LR RF A Sbjct: 142 QRRDFSINSLYYSIADFTVRDYTNGVNDLRQGIIRLLGDPETRYREDPVRMLRAVRFAAK 201 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G K I + + L + R++ E KLL+A + +F+ +F Sbjct: 202 LGMK-ISPETAEPIPRLSSLLHDIPPARLFEEALKLLQAGYGYPTYQLLCEYQLFQPLFP 260 >gi|139436923|ref|ZP_01771083.1| Hypothetical protein COLAER_00056 [Collinsella aerofaciens ATCC 25986] gi|133776570|gb|EBA40390.1| Hypothetical protein COLAER_00056 [Collinsella aerofaciens ATCC 25986] Length = 464 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 157/449 (34%), Gaps = 59/449 (13%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +L L ++ VGG VRD+LM D+D+ + L V+ + I Sbjct: 16 LRVLRALEAAGLEAWYVGGWVRDALMGYPSHDVDMCCSGLWQESKAALEAAGIAVVESGI 75 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQG 133 +G I I + ++TT R D TDGR+ + V + D RRDFT+NA+ + Sbjct: 76 KFGGITAISDGERIEVTTYRLDGFYTDGRHPQSVERAASLEDDLARRDFTVNAMAWHPER 135 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D G DL + I+ +GD R ED LR+LR RF + I+ + A + Sbjct: 136 GLVDRYDGQGDLERKLIRAVGDPKRRFNEDALRMLRAVRFACRL-DFMIEPETKRALAEC 194 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L ++ ER+ E+ +L + +A + + ++ V A Sbjct: 195 APLLDAVARERVGIELEGILSTGHGGDA--MLRYPELICASVPELAAGRGFDQRSVYHAF 252 Query: 254 QVFEW-----------------KIDSLLRFIVLISW----------------------QD 274 V+E S L + + Sbjct: 253 NVYEHIARVLTVAGELALCDGVAPSSSLMWAAFLHDVSKPECFTVDHAGSGHFYGHPELG 312 Query: 275 KKSILSMAKKFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 K + + +L ++ LI + + + + + + G ++ Sbjct: 313 AKKARVIMDRLALSHDLVRDVCLLIKYHDKPLRPERSCLLNMMRALSGEGVDTARLIDEL 372 Query: 332 FLALHYNNLTHQDTCFIL------------QVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379 + L +CF ++L + + + G D+++ G+ PG Sbjct: 373 MDLKRADTLGKAPSCFYYVETIEEMRALAHELLKAGEPYTLKMLAINGGDLIRAGVKPGP 432 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++G +L I +E L L Sbjct: 433 ELGQLLNSALDAVIEDDIPNEREALLVHL 461 >gi|308234961|ref|ZP_07665698.1| tRNA adenylyltransferase [Gardnerella vaginalis ATCC 14018] Length = 472 Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats. Identities = 93/466 (19%), Positives = 164/466 (35%), Gaps = 67/466 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + + + L K + +VGG VRD L++ + D+D T+ P+ I + Sbjct: 7 PEAMELGRLFAKHNYELALVGGPVRDMLLHRTSHDLDFCTSAKPEEFEHILRSWGHDGFW 66 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+K +ITT R D D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAVRRRKDGTEVKVEITTYRCDDYEPDSRKPEVKYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG NDL ++ D +D LR++R RF A G I++ Sbjct: 127 AMALRVPDLEFVDPFGGANDLAKGILRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FTIEA 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + L I+S+ER+ EI K+L + NP I M GI + ++ + L Sbjct: 186 NTAEAILDMVSRLDIVSAERVRDEITKMLLSANPRAGIEAMVESGIADRVLPEIPALRL- 244 Query: 245 QLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSMA-- 282 ++ + + VFE D LR L+ K Sbjct: 245 EIDEHHRHKDVFEHTMMVLERAIALETDNEGAVPRPDLTLRLAALLHDIGKPRTRKFEEG 304 Query: 283 --------------------KKFSLPREIRYFLISFFNCNFNQKTLSIP---EIKKLFYL 319 K I + N + + Y+ Sbjct: 305 GKVSFHHHDVVGAKMTRKRMKALHFDHHIIDDVSELVNLHLRFHGYVDEPWTDSAVRRYV 364 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + + Q + ++ K L L G++ Sbjct: 365 KDSGHLYERLNRLTRADATTQNKRKSLMFEQAMDEMEERVKELKKQEDFNAIRPDLDGNE 424 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +++ + PG VG H +++ + + L+K +S Sbjct: 425 IMQLLDLKPGPIVGKAYKHMLDYRLDNG-PVDHDIAVEELKKWYSS 469 >gi|260888975|ref|ZP_05900238.1| polyA polymerase [Leptotrichia hofstadii F0254] gi|260861035|gb|EEX75535.1| polyA polymerase [Leptotrichia hofstadii F0254] Length = 585 Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats. Identities = 102/440 (23%), Positives = 170/440 (38%), Gaps = 48/440 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D+ IL LN+ K +VGGAVRD ++N D D AT I + RIF Y Sbjct: 6 DDDVKFILEQLNRNG-KGFLVGGAVRDKILNKDPGDYDFATDIEYSELKRIF--AGYNPK 62 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 +G + I K ++I R + + ++ F + + D RRDFTIN++ Sbjct: 63 EMGAHFGILMINVNGKSYEIAKFRKETGVYNSRYPKEIKFVKTIEEDLARRDFTINSIAY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +Q ++D GG D+R + I+F+G RI ED LRILR FRF + G N+D A Sbjct: 123 SEQTGIVDLYGGRQDIRRKVIRFVGKPKLRIEEDALRILRAFRFISKLG-FNLDKKTAEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K +K L +S ERI+ E++K+L K A + M + + I + + Sbjct: 182 IYKKRKFLTKISKERIFDELSKILMGKFVKKAFIEMKKLRVLEMIIPEFYYAYNFDQNNP 241 Query: 250 IEAEQVFEWKI--------DSLLRFIVLISWQDKKSI----------------------L 279 + +F I D + RF L K ++ Sbjct: 242 DHPDDLFNHIIKVIHLCDYDLVTRFAALFHDLGKINVKIIDAKGIFYFYGHEKESALIAE 301 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLA---L 335 K+ + + + + +S +KKL +K + +F A Sbjct: 302 EELKQLKASNDFINSVKKIVKNHMLIYQDVSDKTLKKLIIEMEEKNLKRLFNLFSADLNS 361 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKP-------LFPLTGDDVVKYGIPPGKKVGNILVHC 388 ++ I I + KK +TG D++ +++G + Sbjct: 362 KGLRTKKENEQIIQNFWEKIENIKKQGKIPQFNDLDITGIDLINLKFSN-REIGEVKNRL 420 Query: 389 KQEWINSSFQLSQEDLHHLL 408 + + + +E L + Sbjct: 421 YELVLGDEIENEKEALLKYV 440 >gi|66044085|ref|YP_233926.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a] gi|63254792|gb|AAY35888.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a] Length = 491 Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 67 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 122 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 123 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 182 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 183 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 241 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 242 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 298 >gi|325066341|ref|ZP_08125014.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Actinomyces oris K20] Length = 459 Score = 248 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 80/450 (17%), Positives = 159/450 (35%), Gaps = 59/450 (13%) Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 + + +VGG VRD+ + ++ D+D+ T+ P++ +I + ++GTI Sbjct: 10 RAGHEIALVGGPVRDAFLGVAPHDLDLTTSARPEQTEKILAAWGETTWDVGRAFGTIGAR 69 Query: 84 CRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141 ++TT R++ G R +V + D RRDFT+NA+ +++D GG Sbjct: 70 KGSTIVEVTTYRTEAYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRLPDLELVDPCGG 129 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 L DL ++ A +D LRI+R RF A G +++ D + A + L+I+S Sbjct: 130 LADLNAGILRTPVSAEQSFDDDPLRIMRAARFAAQLG-FDVEMDVMTAMEEMAPRLEIVS 188 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------------SLDQ 245 +ER+ +E+ +LL + P + M + G+ + ++ + +L Sbjct: 189 AERVRAELERLLISPWPRRGLELMVHTGVADVVLPELSALRETVDEHKRHKDVYEHTLTV 248 Query: 246 LSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM--------------------- 281 L Q I+ E + D +LR ++ K + Sbjct: 249 LDQAIDLETGPDGPVPGPDLVLRLAAILHDIGKPATRRFLPDGTVTFHGHDHVGARMTAK 308 Query: 282 -AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMIAKLKIFLALHY 337 + ++ + + Y ++ +L Sbjct: 309 RLRALRFDKQTIKDVSRLVELHLRFHGYVDAAWSDSAVRRYATDAGPLLERLHRLTRADV 368 Query: 338 NNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVV-KYGIPPGKKVGNILV 386 + + + D+ L G ++ + G+ PG VG Sbjct: 369 TTRNRRKAAMLDRAYDDLEERIEALRAAEELAAIRPDLDGGQIMAELGVAPGPIVGEAYR 428 Query: 387 HCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + + ++ LR A+ Q Sbjct: 429 FLMDLRMEKG-PIGEDLARQALRSWWAARQ 457 >gi|237786638|ref|YP_002907343.1| tRNA nucleotidyltransferase [Corynebacterium kroppenstedtii DSM 44385] gi|237759550|gb|ACR18800.1| tRNA nucleotidyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 511 Score = 248 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 88/449 (19%), Positives = 170/449 (37%), Gaps = 59/449 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 + N + +VGG+VRD+L+ D+D T P + R+ T V T I Sbjct: 53 PLAQAFNDDDCDLYLVGGSVRDALLGRLSSDLDFTTNARPHDIHRLLESTCDAVWDTGID 112 Query: 77 YGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK- 134 YGT+ + ++TT R+D + R +V F D RRDFT+NA+ + +G Sbjct: 113 YGTVSGQRSGQDIEVTTFRADTYDGESRNPEVTFGDSLDKDLTRRDFTVNAMAVEVRGDG 172 Query: 135 ---VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 D + GL DL + D +D LR+LR RF + G + + A Sbjct: 173 SQVFHDPLHGLTDLVRGYLDTPDDPAISFHDDPLRMLRACRFVSQLGLR-VAPRVREAME 231 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------ 245 + ++ +++ERI +E++KL+ +P + I M + G+ I ++ + + + Sbjct: 232 RMAGDIQRITAERIHAELDKLILGDHPTDGIELMVDTGLADYIIPEIPAMRMTRDEHMQH 291 Query: 246 -------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS------------------ 280 L + +A D +LR+ L+ K S + Sbjct: 292 KDVYAHSLQVLRQAIDREPDGPDLVLRWAALLHDCGKPSTRAPKPGGGVTFYHHDVVGAK 351 Query: 281 -MAKKFSLPREIRYFL--------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 K+F + + F+ + + +K + +++ Y+ ++ +L Sbjct: 352 MARKRFRALKYSKQFIKDVSGLIYLHQRFHGYTEKAWNDSAVRR--YVTDAGPLLPRLHR 409 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + ++ D+ + L G+D++ I PG Sbjct: 410 LVRADCTTRNQAKARRLQRLYDDLERRIEEIQHKEDLARIRPDLDGNDIMTILDIEPGPM 469 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409 VG H K ++ ++ + L + Sbjct: 470 VGKAWKHMKDVRLDQGPLEREDAILELKK 498 >gi|224283939|ref|ZP_03647261.1| metal dependent phosphohydrolase [Bifidobacterium bifidum NCIMB 41171] gi|313141091|ref|ZP_07803284.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bifidobacterium bifidum NCIMB 41171] gi|313133601|gb|EFR51218.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bifidobacterium bifidum NCIMB 41171] Length = 470 Score = 248 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 90/467 (19%), Positives = 165/467 (35%), Gaps = 69/467 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVI 71 + I + L + +VGG VRD L++ D+D T+ PD I R Sbjct: 7 PEAIELGHLFAARGYELALVGGPVRDLLLHRRSHDLDFCTSAHPDEFEPILRHWGRDGFW 66 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R++ +ITT RSD + R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRREDGTEVKVEITTYRSDTYDPESRKPEVSYGDSLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ Q + +D GG +DL ++ D + +D LR++R RF A G +I Sbjct: 127 AMALRVPQLEFVDPFGGASDLAKGVLRTPVDPYQSFDDDPLRMMRAVRFVAQLG-FSIAP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + I+S+ER+ E+ KLL + P + + G+ +F ++ + L+ Sbjct: 186 DTAAAISDMTDRIDIVSAERVRDELTKLLLSDRPRAGVEALVESGLADIVFPEIPALQLE 245 Query: 245 ----------------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---- 281 L + I E E D LR L K Sbjct: 246 IDEHHRHKDVFEHTMIVLDRAIALETGPEGPVPAPDLTLRLAALTHDIGKPKTRRFEPGG 305 Query: 282 ------------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFY 318 K + + N + ++ + +++ Sbjct: 306 KVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNLHLRFHGYVEEPWTDSAVRRYVK 365 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGD 368 G + +L + + ++ + L + G+ Sbjct: 366 DAGP--LYERLNRLTRADATTQNRRKAMVFSSAMDEMEQRVRDLKEKEDFDAIRPDIDGN 423 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +++ GI PG +VG H + +++ + + L++ AS Sbjct: 424 EIMTILGIAPGPEVGRAYKHMLEYRLDNG-PVDHDTAVAELKRWHAS 469 >gi|281422478|ref|ZP_06253477.1| polyA polymerase family protein [Prevotella copri DSM 18205] gi|281403461|gb|EFB34141.1| polyA polymerase family protein [Prevotella copri DSM 18205] Length = 480 Score = 248 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 80/454 (17%), Positives = 173/454 (38%), Gaps = 61/454 (13%) Query: 16 INILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +I +++ D + +VGG VRD + DID+ V K + Sbjct: 15 KDIFHKISEAADGLSVECYVVGGYVRDLFLERPSNDIDVVVVGSGIEVASALKKMLGRKA 74 Query: 72 P--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 ++GT ++ + + R + +V + D RRDFTINA+ Sbjct: 75 HLSVFRNFGTAQVKYQDTEVEFVGARKESYQHDSRKPIVEDGTLEDDQNRRDFTINAMAI 134 Query: 130 ----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 D+ G+++D G+ D+ + I D +D LR++R RF + I+ + Sbjct: 135 CLNKDRFGELVDPFDGVYDMEDGIIATPLDPDITFSDDPLRMMRCVRFATQLNFQ-IEEE 193 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A + + LKI+S+ERI E+NK++ +K+P + ++ + G+ I ++ + + Sbjct: 194 TYDALSRNAERLKIISAERICDEMNKIMLSKHPSSGFYYLKDTGLLDLILPELIAMDKVE 253 Query: 246 LSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKSILS-------------- 280 + ++ ++ L LR+ L K Sbjct: 254 TRNGRAHKNNYDHTMEVLENVCKHSDNLWLRWAALFHDIGKPKSKRWDNNIGWTFHSHNI 313 Query: 281 --------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMI 326 + ++ LP + + ++ + ++ E +++L GD + Sbjct: 314 IGAKMIPGIFRRMKLPMDAKMKYVQKLVELHMRPIVIADEEVTDSAVRRLLNDAGDDIN- 372 Query: 327 AKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVKY-GIP 376 + + A + + F+ L L + + + + G+++++ + Sbjct: 373 DLMTLCEADITSKNQVRKQRFLDNFKMVREKLVDLQERDYKRLLQPCIDGNEIMEMFHLT 432 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P ++VG + + K +++ +E L LL K Sbjct: 433 PCREVGTLKQYLKDAVLDNKVANEREPLMELLMK 466 >gi|330828362|ref|YP_004391314.1| poly(A) polymerase [Aeromonas veronii B565] gi|328803498|gb|AEB48697.1| Poly(A) polymerase [Aeromonas veronii B565] Length = 488 Score = 248 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 18/243 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNKG ++ +VGG VRD L+ + +D DIAT P+++ +FS R Sbjct: 55 SENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKALFSNCRL--- 111 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R +G + + D+ R Sbjct: 112 -IGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDAER 170 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + D+ GGL DL R ++ IGD R ED +R+LR RF A Sbjct: 171 RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRAVRFAAKL- 229 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + L+ + + R++ E KL A + L + G+F+++F V Sbjct: 230 DMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQQLFPQV 289 Query: 239 QEI 241 + Sbjct: 290 AAL 292 >gi|269138047|ref|YP_003294747.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda EIB202] gi|267983707|gb|ACY83536.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda EIB202] gi|304558091|gb|ADM40755.1| Poly(A) polymerase [Edwardsiella tarda FL6-60] Length = 456 Score = 248 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 19/246 (7%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + + + + +L LNK ++ +VGG VRD L+ +D D+ T P++V ++F Sbjct: 26 TISRQQIS-ENALKVLYRLNKSGYEAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLF 84 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTR 111 R + ++ + ++ T R +G + Sbjct: 85 RNCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEHADESKNIAQQGKNGMLLRDNVYG 140 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + + D+ RRDFTIN+LY V DY GGLNDLR I+ IGD R ED +R+LR Sbjct: 141 NIEEDAQRRDFTINSLYYSVADFSVRDYTGGLNDLRAGQIRLIGDPETRYREDPVRMLRA 200 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A + +I + L+ + + R++ E KLL+A + + + Sbjct: 201 VRFAAKL-QMSISPETAAPIAHLASLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQL 259 Query: 231 FKEIFL 236 F+ +F Sbjct: 260 FQPLFP 265 >gi|304383950|ref|ZP_07366407.1| polyA polymerase [Prevotella marshii DSM 16973] gi|304335028|gb|EFM01301.1| polyA polymerase [Prevotella marshii DSM 16973] Length = 474 Score = 248 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 83/465 (17%), Positives = 177/465 (38%), Gaps = 66/465 (14%) Query: 8 KWFHDSDL-----INILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58 K F + +L NI +++ D + +VGG VRD + DID+ + Sbjct: 2 KIFSNPELTTLLDQNIFHRISEAADDLQLECYVVGGYVRDLFLERPSNDIDVVVVGSGIK 61 Query: 59 VMRIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116 V + + +GT ++ R + R + + +V + D Sbjct: 62 VADRLKQLLGRKAHLSVFKRFGTAQVKYRDIEIEFVGARRESYSHDSRKPIVEDGTLEDD 121 Query: 117 SLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRDFTINAL ++ G++ID G+ D+ + I+ D +D LR++R R Sbjct: 122 QCRRDFTINALAVCLNRERFGQLIDPFDGIADMEDGIIRTPLDPDVTFSDDPLRMMRCVR 181 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F I+ + A ++ LKI+S ERI E++K++ + P V ++ G+ Sbjct: 182 FATQLHFF-IEDETFEALVRNTDRLKIVSGERIVDELHKIMMTRTPSKGFVDLHRTGLLP 240 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLIS---------- 271 I ++ + + + + F ++ L LR+ L+ Sbjct: 241 LIMPELCAMDMVETRNGKAHKNNFYHSLEVLDNICKTTDNLWLRWAALLHDIGKPKSKRW 300 Query: 272 ------------WQDKKSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIP-----EI 313 + K + + K+ LP + + ++ + + ++ + Sbjct: 301 DNTSGWTFHNHNYIGAKMLPQIFKRMKLPMDAKMKYVQKMVDLHMRPIVIADDIVTDSAV 360 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFP 364 ++L GD + + + A + + F+ L + + + Sbjct: 361 RRLVNDAGDDI-DDLMTLCEADITSKNAIRKQRFLENFRIVREKIADLKEKDYKRLLQPV 419 Query: 365 LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+++++ + P ++VG + K+ ++++ +E L LL Sbjct: 420 IDGNEIMEMFHLRPSREVGILKKALKEAVLDNTVPNEREPLMQLL 464 >gi|119718898|ref|YP_925863.1| HDIG domain-containing protein [Nocardioides sp. JS614] gi|119539559|gb|ABL84176.1| HDIG domain protein [Nocardioides sp. JS614] Length = 483 Score = 248 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 84/450 (18%), Positives = 164/450 (36%), Gaps = 60/450 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++ + + +VGG VRD+++ D+D T+ P++ + V + Sbjct: 31 DLGERFTQAGHELALVGGPVRDAMLGRQHNDLDFTTSARPEQTEALLKGWADAVWDMGRA 90 Query: 77 YGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-K 134 +GTI + +ITT RS+ D R V F D RRDFT+NA+ G + Sbjct: 91 FGTIGCRKGEWQVEITTYRSEAYDPDSRKPTVDFGDTLAGDLGRRDFTVNAMAVRVPGRE 150 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D GG+ DL R ++ G +D LR++R RF A G +D + A Sbjct: 151 LEDPYGGVVDLAERVLRTPGRPEDSFSDDPLRMMRAARFAAQLG-FGVDPAVVAAMTAMA 209 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--------- 245 ++I+S+ER+ E+ KL+ A P + + + G+ + ++ ++L++ Sbjct: 210 GRIEIISAERVRDELVKLVCAPYPRLGLRLLVDTGLAALVLPELPALALERDEHHRHKDV 269 Query: 246 -------LSQVIEAE-QVFEWKIDSLLRFIVLISWQDKKSILSMA--------------- 282 L Q I+ E ++ D + RF L+ K Sbjct: 270 YEHTLTVLEQAIDLESRLPGGGPDFVTRFAALMHDVGKPRTRRFIDDGTVTFHHHDVVGA 329 Query: 283 -------KKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKVMIAKLK 330 + + + + + +++ GD+ + +L Sbjct: 330 KMTRKRMRALRFSNDETDAVTKLVELHLRFHGYGTGEWTDSAVRRYVRDAGDQ--LGRLH 387 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGK 379 + + + + D+ L G+ +++ GI PG+ Sbjct: 388 VVTRADCTTRNQRKADRLRRTYDDLEARIARLSEQEELDALRPDLDGNQIMEILGIGPGR 447 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +VG + + ++ +E LL Sbjct: 448 EVGAAYQYLLELRMDRGPMAEEEARAALLE 477 >gi|296537169|ref|ZP_06899104.1| possible tRNA adenylyltransferase [Roseomonas cervicalis ATCC 49957] gi|296262504|gb|EFH09194.1| possible tRNA adenylyltransferase [Roseomonas cervicalis ATCC 49957] Length = 264 Score = 248 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 91/258 (35%), Positives = 137/258 (53%), Gaps = 9/258 (3%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + VGG VRD+L V D+D+A P + KV T + +GT+ + + Sbjct: 5 ARAVGGVVRDALAGRPVHDVDVAAPYPPREIADRLLAAGLKVFETGLQHGTVTAVLDHEP 64 Query: 89 FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNR 148 ++T+LR DL TDGR+A+V +T DW+ D+ RRDFT NAL D +G + DY GG DL Sbjct: 65 VEVTSLRRDLATDGRHAEVAWTTDWREDAARRDFTFNALSMDAEGHIWDYFGGREDLAAG 124 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++F+GD R+ EDYLR+LRFFRF A YG+ ++ L A A GL+ LS+ER+W E Sbjct: 125 RVRFVGDPATRLAEDYLRVLRFFRFHARYGQGAPEAVALAALRDAVPGLQRLSAERVWME 184 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 + +LLE P A+ M G+ + + +++ + D +LR + Sbjct: 185 LKRLLEGPRPAAALALMRETGVLGAVLPEAGDLA---------PLARLDGPADPVLRLSL 235 Query: 269 LISWQDKKSILSMAKKFS 286 L+ L+ +FS Sbjct: 236 LLPQGTPPDGLTQRLRFS 253 >gi|87121697|ref|ZP_01077584.1| polyA polymerase [Marinomonas sp. MED121] gi|86162948|gb|EAQ64226.1| polyA polymerase [Marinomonas sp. MED121] Length = 478 Score = 248 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 23/248 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK + +VGG +RD L++L+ +D D+ T P+ V +FS +R Sbjct: 41 SPNAVKVLYRLNKAGFDAFLVGGCIRDHLIDLAPKDFDVVTNATPEEVHNLFSNSRL--- 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYA-----------KVVFTRDWK 114 + + + ++ +++T R+ D D +++ + D + Sbjct: 98 -IGRRFRLVHVTFGREIIEVSTFRATAQQSEDSKKDDKHSDSARSAHGMILRDNIFGDIE 156 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT NALY D + DY GGL D+ + ++ IGDA R ED +R+LR RF Sbjct: 157 QDAERRDFTFNALYYDISDFSIHDYCGGLEDIAAKKVRIIGDAKLRYQEDPVRMLRAIRF 216 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + +I+++ + L + R++ E+ KLL + N + + G+F+ Sbjct: 217 AAKL-DFDIEAETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGVTTYKLLREYGLFRY 275 Query: 234 IFLDVQEI 241 +F + E+ Sbjct: 276 LFPETDEL 283 >gi|238754483|ref|ZP_04615838.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473] gi|238707312|gb|EEP99674.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473] Length = 467 Score = 248 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 22/252 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 38 ISRKEISD-NALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 96 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 97 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQPESNDKNSSQQAQNGMLLRDNI 152 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 153 FGSIEEDAQRRDFTINSLYYGISDFALRDYTGGLRDLKQGIIRLIGDPEVRYREDPVRML 212 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L+ + R++ E KLL++ + + Sbjct: 213 RAVRFAAKL-DMTISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 271 Query: 229 GIFKEIFLDVQE 240 +F+ +F + Sbjct: 272 QLFQPLFPLIAR 283 >gi|227834346|ref|YP_002836053.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|227455362|gb|ACP34115.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 545 Score = 248 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 88/447 (19%), Positives = 165/447 (36%), Gaps = 55/447 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ + +VGG+VRD+L+ D+D T PD V I + V T I + Sbjct: 97 LVERFALHDAPLYLVGGSVRDALLGRLGNDLDFTTPARPDVVYSILEEWAETVWDTGIDF 156 Query: 78 GTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA----DQQ 132 GT+ + + +ITT RSD R +V++ + D +RRDF +NA+ D Sbjct: 157 GTVSAAYKGQQIEITTFRSDSYDGQSRNPEVMYGDTLEGDLVRRDFKVNAMAIELRSDGT 216 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D +GGL+DL R + +D LR+LR RF A E ++ A I Sbjct: 217 REFHDPMGGLDDLAKRILDTPDAPEISFHDDPLRMLRAARFAAQL-EFDVAQRVRDAMID 275 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++ ++ ER+ E+NKL+ P I + + GI +F ++ + + Sbjct: 276 MAGEIQRITVERVQVELNKLICGTAPWKGIDLLVDSGIADYVFPEIPALRMAPDEHAQHK 335 Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------I 278 L+ + +A + E D +LR+ L+ K Sbjct: 336 DVYAHSLTVLRQAMEQEEEGPDLILRWAALLHDIGKPDTRDTTDGKVSFHHHEVVGAKLT 395 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKIFLAL 335 +K P+ + + + Y+ ++ +L + Sbjct: 396 RKRLRKLKFPKATTEDIGQLVYLHMRFHGFGDGQWTDSAVRRYVTDAGDLLPRLHKLVRA 455 Query: 336 HYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVGNI 384 + + + + + L G+++++ G+ PG +VG Sbjct: 456 DCTTRNERKARRLQRTYDQLEERIADIAAKEDLARVRPDLDGNEIMEILGLEPGPEVGKA 515 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKL 411 + K+ + L +E LR+ Sbjct: 516 WSYLKELRLEEG-PLEREVAIAKLREW 541 >gi|327483400|gb|AEA77807.1| Poly(A) polymerase [Vibrio cholerae LMA3894-4] Length = 457 Score = 248 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--KTEQMLDLVLDA 291 >gi|314987177|gb|EFT31269.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA2] gi|314990621|gb|EFT34712.1| tRNA adenylyltransferase [Propionibacterium acnes HL005PA3] Length = 507 Score = 248 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 155/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFAQASHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ K D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLKDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 351 Query: 282 -------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALTYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ GI PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMAILGIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTPDESKNALL 499 >gi|227547075|ref|ZP_03977124.1| possible tRNA adenylyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212492|gb|EEI80381.1| possible tRNA adenylyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 471 Score = 248 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 176/468 (37%), Gaps = 67/468 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D ++ P++ I + + Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G + I Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-KKSILSMAKKFSL-------PREIRYFL- 295 Q+ + + VFE + L R I L + D + + + P+ R+ Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFESG 304 Query: 296 --ISFFNCNFNQKTLSIPEIKKLFYLY--------------------------------- 320 +SF + + ++ +K L + + Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364 Query: 321 -GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + Q + ++ + L L G++ Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++ G+ PG +G H + +++ + + L+ A Q Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNG-PVDHDVAVEELKCWYAEIQ 471 >gi|170717755|ref|YP_001784822.1| poly(A) polymerase [Haemophilus somnus 2336] gi|168825884|gb|ACA31255.1| poly(A) polymerase [Haemophilus somnus 2336] Length = 457 Score = 248 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 29/314 (9%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKT 66 + ++++ L++ ++ IVGG +RD L+ +D D+AT P++V IF + Sbjct: 34 PRMISRNALSVVEKLHRNGYEAYIVGGCLRDLLLGKKPKDFDVATNAKPEQVQAIFQRQC 93 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKA 115 R + I+ + ++ T R+ + G + + Sbjct: 94 RL----VGRRFRLAHIMFGRDIIEVATFRAAHTDNHNERQAKQNNAGMLLRDNVYGTIEQ 149 Query: 116 DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT+NA Y + Q + DY G+ DL+ ++ IGD R ED +R+LR RF Sbjct: 150 DAERRDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSIRFM 209 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A +D K LK + R++ E KLL+A + + G+F ++ Sbjct: 210 AKLDMF-LDKPSQEPIKKMAHLLKNIPPARLFDESVKLLQAGYGIKTYQLLREYGLFDQL 268 Query: 235 FLDVQEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAK 283 F + D+ E E+V + I+ F + ++ + ++ Sbjct: 269 FPTLTSYFTDKADSFAEKMIITALTSTDERVADNLPINPAFLFAAFFWYPLREKVETLKN 328 Query: 284 KFSLPREIRYFLIS 297 + S Y L S Sbjct: 329 EGSFNNHDAYALAS 342 >gi|303242318|ref|ZP_07328804.1| CBS domain containing protein [Acetivibrio cellulolyticus CD2] gi|302590157|gb|EFL59919.1| CBS domain containing protein [Acetivibrio cellulolyticus CD2] Length = 879 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 101/428 (23%), Positives = 177/428 (41%), Gaps = 35/428 (8%) Query: 13 SDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 ++ +L+L K +VGG VRD ++ + DIDI R F++T Sbjct: 461 PNVREVLALAGKVADLEGFSIYVVGGFVRDLILGVENLDIDIVVEGDAIAFARKFAETSK 520 Query: 69 KVIPTSISYGTI-KIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 V+ + T ++ DI T R + V K D RRDFTIN + Sbjct: 521 AVLTEYEKFQTAYAVLAEDLKIDIVTARKEYYEFPGALPSVERGSIKDDLFRRDFTINCI 580 Query: 128 YA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 + GK++D+ GG DL + I+ + + +ED RILR RF YG K + Sbjct: 581 AMKLNGREFGKIVDFYGGRRDLYDGIIRILYN--FSFIEDPTRILRAVRFEQRYGFKMDE 638 Query: 184 SDGLVAS-IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 A L LS ERI SE +L+ KN + + M G+ ++I+ ++ + Sbjct: 639 KTEEFAIDAINSDVLDKLSRERINSEFFYMLKEKNTVIMLERMQELGLLEKIYPEI--ML 696 Query: 243 LDQLSQVIEAEQVF----------EWKIDSLL-RFIVLISWQDKKSILSMAKKFSLPREI 291 D+L ++E + ID +L +VL S +++ ++ +F L +E Sbjct: 697 SDRLKMLMEKSDKHYDEFYNSLINKKNIDKILVYLLVLYSDVCMENVPVLSDRFRLSKEY 756 Query: 292 RYFLISF---FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 R ++ F + ++ Y + + L + L+L ++++ Sbjct: 757 RDEILRFAKVRDLKLHEILNGGEPSNYEIYCMFKGLALESLYM-LSLMFDDMLKGAVLLY 815 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 LS+I +TG D+ + GI PG ++ IL +E IN E++ ++ Sbjct: 816 ANNLSNIKTK------ITGRDLQELGISPGPQIKKILEIVLKEKINGKIFTRSEEIDYVK 869 Query: 409 RKLIASSQ 416 L+ + Sbjct: 870 INLLDEEK 877 >gi|162420585|ref|YP_001605569.1| poly(A) polymerase I [Yersinia pestis Angola] gi|165925807|ref|ZP_02221639.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. F1991016] gi|166010184|ref|ZP_02231082.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166214122|ref|ZP_02240157.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398734|ref|ZP_02304258.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420762|ref|ZP_02312515.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423197|ref|ZP_02314950.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229839037|ref|ZP_04459196.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896516|ref|ZP_04511684.1| Poly(A) polymerase [Yersinia pestis Pestoides A] gi|229899602|ref|ZP_04514743.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India 195] gi|229901064|ref|ZP_04516187.1| Poly(A) polymerase [Yersinia pestis Nepal516] gi|294505105|ref|YP_003569167.1| poly(A) polymerase [Yersinia pestis Z176003] gi|115349027|emb|CAL21988.1| poly(A) polymerase [Yersinia pestis CO92] gi|162353400|gb|ABX87348.1| poly(A) polymerase [Yersinia pestis Angola] gi|165922419|gb|EDR39596.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165991091|gb|EDR43392.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166204753|gb|EDR49233.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961568|gb|EDR57589.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051238|gb|EDR62646.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057367|gb|EDR67113.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681789|gb|EEO77882.1| Poly(A) polymerase [Yersinia pestis Nepal516] gi|229687094|gb|EEO79169.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India 195] gi|229695403|gb|EEO85450.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700590|gb|EEO88621.1| Poly(A) polymerase [Yersinia pestis Pestoides A] gi|294355564|gb|ADE65905.1| poly(A) polymerase [Yersinia pestis Z176003] gi|320016600|gb|ADW00172.1| Poly(A) polymerase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 440 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 11 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFR 69 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 70 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 125 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 126 FGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 185 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I + + L+ + R++ E KLL++ + + Sbjct: 186 RAVRFAAKL-DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 244 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 245 QLFQPLFPLIARNFTEQHDSPMER 268 >gi|256833750|ref|YP_003162477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Jonesia denitrificans DSM 20603] gi|256687281|gb|ACV10174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Jonesia denitrificans DSM 20603] Length = 492 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 84/461 (18%), Positives = 155/461 (33%), Gaps = 64/461 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +I + L + + IVGG VRD+L+ + D+D AT+ PD + Sbjct: 27 NPTVIELGELFHAAGHELAIVGGPVRDALLGRTSHDLDFATSASPDETEALLRTWGDSHW 86 Query: 72 PTSISYGTIKIICRKKY------FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTI 124 +GTI + +ITT R+D R V F D RRDFT+ Sbjct: 87 DIGKEFGTIGAMRHGVNGSDDIVVEITTYRTDKYDPTSRKPLVAFGDTLDGDLSRRDFTV 146 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ + D GLNDL + ++ +D LR++R RF A G ++ Sbjct: 147 NAMAIRLPELTFADPFDGLNDLSHGLLRTPIRPEQSFDDDPLRMMRAARFAAQLG-FTVE 205 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---- 239 D A + I+S+ER+ E+ KL+ + +P+ + + N G+ + +V Sbjct: 206 PDAFAAIAAMAGRISIVSAERVRDELTKLMLSAHPVTGLEVLVNTGLAHHVIPEVPGMKE 265 Query: 240 ------------EISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM--- 281 ++ + Q I+ E + D +LRF L+ K + Sbjct: 266 ASDEHNRHKDVYAHTMTVIQQAIDLETGPDGPVPAPDLVLRFAALMHDVGKPATRKFEPN 325 Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYL 319 + ++ + + + + Y+ Sbjct: 326 GTVSFHHHELVGAKMTAKRLRALRFDKDTIKSVSRLVELHLRFHGYGEGAWTDSAVRRYV 385 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDD 369 + +L + + D+ L G+ Sbjct: 386 TDAGPHLERLHRLTRADCTTRNKNKARRLSRAYDDLEQRIVALREQEEIDAIRPDLNGEQ 445 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ GI PG++VG + + ++ LL+ Sbjct: 446 IMDILGIAPGREVGLAYKYLLELRMDEGPLDEDTAKERLLQ 486 >gi|153997558|ref|ZP_02022658.1| poly(A) polymerase [Yersinia pestis CA88-4125] gi|149289195|gb|EDM39275.1| poly(A) polymerase [Yersinia pestis CA88-4125] Length = 502 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 73 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFR 131 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 132 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 187 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 188 FGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 247 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I + + L+ + R++ E KLL++ + + Sbjct: 248 RAVRFAAKL-DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 306 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 307 QLFQPLFPLIARNFTEQHDSPMER 330 >gi|229512859|ref|ZP_04402326.1| poly(A) polymerase [Vibrio cholerae TMA 21] gi|229520886|ref|ZP_04410308.1| poly(A) polymerase [Vibrio cholerae TM 11079-80] gi|229525250|ref|ZP_04414655.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426] gi|229530403|ref|ZP_04419791.1| poly(A) polymerase [Vibrio cholerae 12129(1)] gi|254226863|ref|ZP_04920433.1| polyA polymerase [Vibrio cholerae V51] gi|254291266|ref|ZP_04962061.1| polyA polymerase [Vibrio cholerae AM-19226] gi|262190661|ref|ZP_06048894.1| poly(A) polymerase [Vibrio cholerae CT 5369-93] gi|297580723|ref|ZP_06942649.1| polyA polymerase [Vibrio cholerae RC385] gi|125620614|gb|EAZ48978.1| polyA polymerase [Vibrio cholerae V51] gi|150422830|gb|EDN14782.1| polyA polymerase [Vibrio cholerae AM-19226] gi|229332176|gb|EEN97664.1| poly(A) polymerase [Vibrio cholerae 12129(1)] gi|229338831|gb|EEO03848.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426] gi|229342119|gb|EEO07115.1| poly(A) polymerase [Vibrio cholerae TM 11079-80] gi|229350108|gb|EEO15061.1| poly(A) polymerase [Vibrio cholerae TMA 21] gi|262033445|gb|EEY51950.1| poly(A) polymerase [Vibrio cholerae CT 5369-93] gi|297535139|gb|EFH73974.1| polyA polymerase [Vibrio cholerae RC385] Length = 457 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--KTEQMLDLVLDA 291 >gi|320330254|gb|EFW86239.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4] Length = 467 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATNATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274 >gi|312142006|ref|YP_004009342.1| polynucleotide adenylyltransferase [Rhodococcus equi 103S] gi|311891345|emb|CBH50666.1| putative polynucleotide adenylyltransferase [Rhodococcus equi 103S] Length = 484 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 82/451 (18%), Positives = 174/451 (38%), Gaps = 59/451 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + + + +VGG+VRD+++ D+D T P+RV +I T Sbjct: 29 LDPLGARFTEAGHELYLVGGSVRDAVLGRLGTDLDFTTDAHPERVQQILRGWADNQWDTG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I++GTI +ITT R+D R +V + D +RRDFT+NA+ G Sbjct: 89 IAFGTISAAKGADQIEITTYRTDTYDGVTRNPEVQYGTTLDEDLVRRDFTVNAMAVRVDG 148 Query: 134 ----KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +D + G++ L + +D LR+LR RF + G + A Sbjct: 149 TGTFEFVDPLNGMDALLAGVLDTPAAPEISFNDDPLRMLRAARFVSQLG-FTLAPRVHEA 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244 ++ ++ +++ER+ +E++KL+ + P++ + M G+ + ++ ++ L+ Sbjct: 208 IVEMSGQIERITAERVRTELDKLILGEFPIDGVNVMCETGLAARVIPEIPQLKLEIDEHH 267 Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS---------------- 280 L+ + +A + + D +LR+ L+ K Sbjct: 268 QHKDVYWHSLTVLKQAIDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHEVVG 327 Query: 281 ---MAKKFSLPREIRYFL-----ISFFNCNFN---QKTLSIPEIKKLFYLYGDKVMIAKL 329 + K+ + + + + F + F+ + + +++ GD ++ +L Sbjct: 328 AKMVRKRMRALKYSKQMVDEVGQLVFLHLRFHGYGEGQWTDSAVRRYVTDAGD--LLPRL 385 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 + + + D+ + L G+ +++ GIP G Sbjct: 386 HKLVRADCTTRNKRRAAKLQATYDDLERRIARIAEQEDLARVRPDLDGNAIMELLGIPAG 445 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +VG K+ ++ E LL+ Sbjct: 446 PQVGKAWKFLKELRLDRGPLERDEAEAELLK 476 >gi|308185719|ref|YP_003929850.1| poly(A) polymerase [Pantoea vagans C9-1] gi|308056229|gb|ADO08401.1| poly(A) polymerase [Pantoea vagans C9-1] Length = 479 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 77/415 (18%), Positives = 151/415 (36%), Gaps = 55/415 (13%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F Sbjct: 46 TISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLF 104 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRS----DLITDGRYA----------KVVF 109 R + ++ + ++ T R + I + R + + Sbjct: 105 RNCRL----VGRRFRLAHVMFGPEVIEVATFRGHHQVEEIAEDRNSSQRAQSGMLLRDNI 160 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRD TIN+LY V DYVGG++DL I+ IGD R ED +R+L Sbjct: 161 FGSIEDDAQRRDLTINSLYYSVADFSVRDYVGGISDLEQGIIRLIGDPETRYREDPVRML 220 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A +I + + L+ + R++ E KLL+A + + + Sbjct: 221 RVARFAAKLN-MSIAPETAEPIPRLASLLRDIPPARLFEESLKLLQAGYGYSTYLKLCEY 279 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKS 277 +F+ +F + + +E QV + +++ F + + ++ Sbjct: 280 QLFQPLFPTLARNFTENSDSHMERMLAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPQLEA 339 Query: 278 ILSMA-----------------------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 +A + ++P+ I + + Sbjct: 340 AERIAQESGLTYFEAFAMAMNDTLDEACRALAIPKRITSLIRDIWLLQLRMSRRHGKRAW 399 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 KL + L + + N + + + + +K + GDD Sbjct: 400 KLMEHPKFRAAYDLLALRAEVENNPELLRLSQWWGEFQVAAPPHQKNMLNNLGDD 454 >gi|54027630|ref|YP_121872.1| putative tRNA nucleotidyltransferase [Nocardia farcinica IFM 10152] gi|54019138|dbj|BAD60508.1| putative tRNA nucleotidyltransferase [Nocardia farcinica IFM 10152] Length = 485 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 90/459 (19%), Positives = 175/459 (38%), Gaps = 62/459 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + L + +VGG+VRD+++ D+D T P++V+ I V T Sbjct: 31 LTPLGGLFAARGHELYLVGGSVRDAVLGRLGTDLDFTTDARPEQVLEIMRGWADHVWDTG 90 Query: 75 -ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY---- 128 +++GT+ + +ITT RSD R +V F + D +RRDFT+NA+ Sbjct: 91 GLAFGTVSAAKAGQQLEITTFRSDTYDRVSRNPEVTFGDTLEGDLVRRDFTVNAMAVRIA 150 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 AD + +D +GG++ L + +D LR+LR RF + G + Sbjct: 151 ADGSLEFVDPLGGMDALLAGVLDTPASPEDSFDDDPLRMLRAARFVSQLG-FELAPRVRA 209 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD---- 244 A + + + +++ER+ E++KL+ +P++ I M G+ + + +V + L+ Sbjct: 210 AIGRMAEQIDRITAERVRVELDKLIAGDHPIDGIDIMCETGLAQRVLPEVPAMKLEIDEH 269 Query: 245 ---------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS------------------ 277 L+ + +A + + D +LR+ L+ K Sbjct: 270 HQHKDVYRHSLTVLEQAIDLEDGDPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHEVV 329 Query: 278 ----ILSMAKKFSLPREIRYFLISFFNCNFNQK----------------TLSIPEIKKLF 317 + + P++ + + T + + +L Sbjct: 330 GAKMVRKRMRALKYPKQFTEDVARLVFLHLRFHGYGKGQWTDSAVRRYVTDAGDLLPRLH 389 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY-GIP 376 L + AL ++ LQ D+ K L G+ +++ G+P Sbjct: 390 KLVRADCTTRNKRRASALQATYDELEERIARLQQEEDLA---KVRPDLDGNAIMELLGLP 446 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 PG +VG + K+ ++ +E L+ + S Sbjct: 447 PGPEVGRAWRYLKELRLDRGPLTREEAEAALVEWWKSQS 485 >gi|301061040|ref|ZP_07201837.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2] gi|300444834|gb|EFK08802.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2] Length = 444 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 91/443 (20%), Positives = 175/443 (39%), Gaps = 57/443 (12%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 I+ L + ++ +VGGAVRD L+ + D+DI T+ P+ + +F Y V + Sbjct: 5 RIIKRLCQHGYETYVVGGAVRDMLIGKAPADVDIVTSATPEEIEVLFE--GYPVKTVGKA 62 Query: 77 YGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYA-DQQG 133 +G + + ++++T R D D + +V F + D RRD TINA+ DQ G Sbjct: 63 FGVVLVA----GYEVSTFRQDRYLGLDDKACQVTFVEAIEEDLSRRDLTINAMAFCDQSG 118 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +ID G DL+ R I+F+G+ RI ED RI+R RF A + + D A + Sbjct: 119 ALIDPHNGREDLKKRRIRFVGNPMERIYEDPNRIVRACRFLARI-DGSFDPQTFKALKEC 177 Query: 194 KKGLK-ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ ++ +R+ EI K ++ + +++ G+ + IF +++ Sbjct: 178 GHYVRDHVAPDRVRIEIMKAMKIRRASRFFYALHDIGVLQYIFPSMEKCY-SHAHGPHHL 236 Query: 253 EQVFEWKID---------SLLRFIVLISWQDKKSIL------------------SMAKK- 284 E VF+ + LL+ + K + S A + Sbjct: 237 EDVFDHLMICGDAVSIRYPLLKLAGYLHDVGKPLVYEYNPEKGHHTFYGHAGAGSEAARE 296 Query: 285 ----FSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 + + + + ++ +++ + + + + L L + Sbjct: 297 EMGLLRFSNSDIDHVSTLVGLHMRAMEGITPKAARRMLKTLHEHDIDFRDFLRLRLADSQ 356 Query: 340 LTHQDTCFILQVLSDIIH----------WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHC 388 + L +I+H + +TG DV+ I PG KVG +L Sbjct: 357 ANLAKRPMAIADLKNIVHAFEVESYEGSFSVTDLAVTGKDVMAVLRIAPGPKVGKVLKSL 416 Query: 389 KQEWINSSFQ-LSQEDLHHLLRK 410 ++ + S+E L ++ + Sbjct: 417 LDRVLDQGKELNSRETLLAVIAR 439 >gi|319903055|ref|YP_004162783.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides helcogenes P 36-108] gi|319418086|gb|ADV45197.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides helcogenes P 36-108] Length = 482 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 176/456 (38%), Gaps = 57/456 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++F D +I + ++ + VGG VRD + +DID+ + + Sbjct: 11 QFFSDDIFKSISATADELGLECYAVGGYVRDIFLQRPSKDIDVVVVGSGIAMAEALGRRL 70 Query: 68 YKVIPT--SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + ++GT ++ R + R + T +V + D RRDFTIN Sbjct: 71 GRGAHVSVFKNFGTAQLKYRGVEVEFVGARKESYTHDSRKPIVEDGTLEDDQNRRDFTIN 130 Query: 126 ALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL G+++D GG+ D++ RTI+ D +D LR++R RF Sbjct: 131 ALAVCLNRARYGELVDPFGGMQDMKERTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ID + + ++ + I+S ERI E+NK++ + P + + G+ + IF ++ + Sbjct: 190 IDDGTFDSLCRNRERISIISKERIADELNKIILSPIPSRGFIDLDRCGLLELIFPELVAL 249 Query: 242 SLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLIS------------------- 271 + + F ++ L LR+ L+ Sbjct: 250 QGVETRNGRAHKDNFYHTLEVLDNICKNTDNLWLRWAALLHDIAKPVTKRWEPRVGWTFH 309 Query: 272 ---WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGD 322 + +K I ++ +K LP E ++ + + ++ +++L + GD Sbjct: 310 NHNFIGEKMIPNIFRKMKLPMNEKMKYVQKLVSLHMRPIVIADDVVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK- 372 + + + A + + F+ L+ L + + P++G++++K Sbjct: 370 DI-DDLMILCEADITSKNVERKKRFLDNFQLVRRKLKDLEERDRVRNFQPPVSGEEIMKT 428 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G+ P ++VG + K ++ E + Sbjct: 429 FGLSPCRQVGVLKSAIKDAILDGIIPNEYEAARSFM 464 >gi|270292416|ref|ZP_06198627.1| polyA polymerase [Streptococcus sp. M143] gi|270278395|gb|EFA24241.1| polyA polymerase [Streptococcus sp. M143] Length = 354 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 162/365 (44%), Gaps = 17/365 (4%) Query: 49 DIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK- 106 DIAT+ P+ +IF +T I +GT+ ++ + +++TT R++ + D R Sbjct: 2 DIATSSYPEETKQIFPRTA----DIGIEHGTVLVLDGNEEYEVTTFRTEDVYVDYRRPSA 57 Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 V F R + D RRDFT+NA D+ G++ID GL DL N+ ++ +G A R ED LR Sbjct: 58 VSFVRSLEEDLKRRDFTVNAFALDETGEIIDLFHGLEDLENQVLRAVGIASERFNEDALR 117 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 I+R FRF A G ++ + A L+ +S ER + E +KLL A + M Sbjct: 118 IMRGFRFQASLG-FELEPETFEAMKSLTPLLEKISVERTFVEFDKLLLAPFWRVGLSSMI 176 Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 + + D+ S D+L+++ + E F ++ S + L+ + K K + Sbjct: 177 ESQAYNYL-PDM-AGSQDKLNRLFDLESDFTFE-SSEQAWAALLWTLEIKDAQPFLKAWK 233 Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346 R+ + ++ + K+ Y + ++ + A + Sbjct: 234 TSRQFAKQVQDLLTILALREEGEL--SKRDCYRFDLDSLLQAENLRQA----QGKAVNPQ 287 Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 I + + + K + G ++K YG PG +G +L + ++ + ++ +H Sbjct: 288 AITETYQSLTIYDKKEIQINGGILIKEYGYQPGPDLGEVLTEIEFAIVDGELENDRQAIH 347 Query: 406 HLLRK 410 LR+ Sbjct: 348 AYLRE 352 >gi|333029157|ref|ZP_08457218.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides coprosuis DSM 18011] gi|332739754|gb|EGJ70236.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Bacteroides coprosuis DSM 18011] Length = 481 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 174/456 (38%), Gaps = 57/456 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT- 66 K F I ++ + +VGG VRD ++ DID+ ++ ++ Sbjct: 11 KKFDSPIFHQISQTADELNLECYVVGGYVRDIFLDRPSTDIDVVVVGSGIKIAEALTRKL 70 Query: 67 -RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 R + ++GT ++ + + R + +V + D RRDFTIN Sbjct: 71 GRGANLSVFKNFGTAQVKYKNLEVEFVGARKESYQRDSRKPIVEDGTLEDDQNRRDFTIN 130 Query: 126 ALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 A+ ++ G++ID G+ DL +TI+ D +D LR++R RF Sbjct: 131 AMAVCLNQERFGELIDPFNGMKDLEEKTIRTPLDPDITFSDDPLRMMRCIRFATQLNFY- 189 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I+ D + + + ++I+S ERI E+NK++ + P V + G+ IF ++ + Sbjct: 190 IEDDTFDSLARNHERIEIISKERIADELNKIILSPVPSKGFVDLDRSGLLALIFPELLAL 249 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKS------------- 277 D ++ D+L LR+ L+ K + Sbjct: 250 QGVETVNGRGHKDNFYHTLQVLDNICQATDNLWLRWAALLHDIAKPATKRWDPKAGWTFH 309 Query: 278 ---------ILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGD 322 I + +K LP E ++ + ++ E +++L + GD Sbjct: 310 NHNFIGEKMIPKIFRKMKLPMNEKMKYVQKLVRLHMRPIVIADDEVTDSAVRRLLFEAGD 369 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVKY 373 + + + A + + F+ L+ + + + P++G+++++ Sbjct: 370 DI-DDLMTLCEADITSKNLERKQRFLNNFALVRRKLKSIEEKDRVRNFQPPISGEEIMEM 428 Query: 374 -GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +PP K+VG++ K ++ + + L Sbjct: 429 FNLPPSKEVGSLKTAIKDAILDGVIPNEYDAAFNFL 464 >gi|51588364|emb|CAH19972.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 32953] Length = 437 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 11 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFR 69 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 70 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 125 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 126 FGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 185 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I + + L+ + R++ E KLL++ + + Sbjct: 186 RAVRFAAKL-DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 244 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 245 QLFQPLFPLIARNFTEQHDSPMER 268 >gi|260579544|ref|ZP_05847415.1| polyA polymerase [Corynebacterium jeikeium ATCC 43734] gi|258602315|gb|EEW15621.1| polyA polymerase [Corynebacterium jeikeium ATCC 43734] Length = 541 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 86/478 (17%), Positives = 163/478 (34%), Gaps = 80/478 (16%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D DL+ + +VGG+VRD+L+ D+D T P ++ I + V Sbjct: 56 DRDLLPLTQAFQDAGHSLYLVGGSVRDALLGRLSHDLDFTTDARPQAIVDIVTPLAETVW 115 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA- 129 T I YGT+ + + + +ITT R+D R +V F D +RRDF NA+ Sbjct: 116 DTGIEYGTVSALVKGQILEITTFRADQYDGQSRNPEVSFGDSLDGDLIRRDFRANAIALE 175 Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 D ++ D +GGL DL+ + +D LR+LR RF + E + Sbjct: 176 LSPDGNHQLRDPLGGLEDLQAGVLDTPDSPEISFNDDPLRMLRACRFVSQL-EFGVTKRV 234 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245 A + + ++ ER+ E+NKL+ P + M G+ + ++ + L Q Sbjct: 235 KEAMAAMSEQISRITVERVAVELNKLMLGAAPWVGLDLMVETGLADHVLPELPALKLTQD 294 Query: 246 ---------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------- 281 L + E + LR L+ K + Sbjct: 295 EHRQHKDVYWHSLKVLRNAVNLEAERGLEPSLELRMAALLHDIGKPDTRAFTESGAVTFH 354 Query: 282 -------------AKKFSLPREIRYFLISFFNCNF------------------------- 303 +K ++ + + Sbjct: 355 QHEVVGARITRRRLRKLKYSKQHVQDIGQLVFLHMRFHGYADTQGKGQNQDARRGAGEKD 414 Query: 304 -NQKTLSIPEIKKLFYLYGDKVMIAKLKIFL--------ALHYNNLTHQDTCFILQVLSD 354 N+ T + +++ G + + L + T+ + ++ L + Sbjct: 415 NNESTWTDSAVRRYVNDAGKLLPLLHLLVRADCTTRNQRKAQRLQRTYDNLEKRIEQLQE 474 Query: 355 IIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 L G+++++ + PG VG + K+ ++ + +ED L++ Sbjct: 475 QEDLAAVRPDLDGNEIMQILDLKPGPDVGKAWAYLKELRLDRG-PMEREDAIAALKQW 531 >gi|317010861|gb|ADU84608.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori SouthAfrica7] Length = 576 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 107/401 (26%), Positives = 165/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I R ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRVEKGHIKHRRPKELVFSTHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I +GDA R ED LRILR RF A G K I + A Sbjct: 125 SPTKGLIDPFKGQNAIENQVIACVGDARLRFFEDALRILRALRFSATLGFK-IAASTKKA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVIQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ C+ Sbjct: 238 KNAPLNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFSKAKECHQAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ +KK L G Sbjct: 286 NKTELKFLLKDYDLEPFNLAL-DFYALENPKHALKIKRLLKEIFDSNEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + S E L + Sbjct: 345 ALQSLGYQHQK-IGEILNACLDLVIANPKHNSLEFLIEWAK 384 >gi|172057791|ref|YP_001814251.1| polynucleotide adenylyltransferase region [Exiguobacterium sibiricum 255-15] gi|171990312|gb|ACB61234.1| Polynucleotide adenylyltransferase region [Exiguobacterium sibiricum 255-15] Length = 379 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 171/396 (43%), Gaps = 37/396 (9%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I+ + ++ IVGGAVRD L+ D D+AT++LP+ VM +F VIP Sbjct: 3 ESANQIIQTIEAAGGEAYIVGGAVRDMLLKREPGDYDLATSLLPEAVMHLFP----VVIP 58 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++ F++TT RS+ +D R +V + D RRDFTINA+ Sbjct: 59 TGLDHGTVTVVLDHVPFEVTTFRSESTYSDRRRPDEVTLGVSLEEDLTRRDFTINAMALK 118 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G ++D GG DL + ++ +G A R ED LR++R FRF + E +D + A Sbjct: 119 PTG-LVDLFGGQADLATKVVRTVGRAEDRFDEDALRMIRAFRFMSQL-EFTLDPETERAI 176 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 K+ L ++ ERI E KLL A+ M GI + + ++ L QL + Sbjct: 177 ENKKQHLSSVAVERIAIEFEKLLLGPGRKAALAAMRRTGIGHYM-PHMNDVILHQLMLLP 235 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 F + +VL++ +S+ + + ++ +F +++TLS Sbjct: 236 -----FNGVSPDDVWTLVLVAGLHPESL----RAWKRSKKQEGRAKTFAPL-VHEQTLSD 285 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + +L + ++ H+ + + + G D+ Sbjct: 286 WQRYRL----------SDEELDHLNQMTGYRHEGRASLPIR-------RLQDLTVNGRDM 328 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHH 406 + G+ ++ L H +Q+ ++ +E L Sbjct: 329 MDLGLRK-HQIKEALHHLEQQVVHRQLDNEREILLK 363 >gi|256821580|ref|YP_003145543.1| poly(A) polymerase [Kangiella koreensis DSM 16069] gi|256795119|gb|ACV25775.1| poly(A) polymerase [Kangiella koreensis DSM 16069] Length = 456 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 86/404 (21%), Positives = 155/404 (38%), Gaps = 47/404 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L L+ +S +VGG VRD L+ L +D DIAT P+++ +F Sbjct: 36 ISRKDISD-NALKVLYRLSNAGYESFLVGGGVRDILLGLHPKDFDIATNATPEQIKELFR 94 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSL 118 R + I+ + ++ T R+ +G + D + D++ Sbjct: 95 NCRI----IGRRFRLAHILFGRDVIEVATFRAHCDDNIQQAKEGMILRDNVYGDIEEDAI 150 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY + V D+ GL DLR R ++ IGD R ED +R+LR R Sbjct: 151 RRDFTINALYYNIKDFSVHDFCDGLADLRKRQLRMIGDPETRYREDPVRMLRAVRLACKL 210 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL- 236 I+ + L + L+ + + R+W E KL A + G+F +F Sbjct: 211 N-LTIEPNTLKPVAELSHFLEQVPAARLWEEYRKLFLAGAAKLTFQKLREYGLFHALFPA 269 Query: 237 --------------DVQEISLDQLSQV---IEAEQVFEWK-IDSLLRFIVLISWQDKKS- 277 ++++ LD L I +EQ + +++ + L+ + Sbjct: 270 TDRALKHDDETQTQAIEQLVLDALENTDTRIASEQTVNPAFLMAVMLWQPLLESTEALQQ 329 Query: 278 ---------ILSMAKKFSLPREI----RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 SMA+ + + R + + + Q L KK + ++ Sbjct: 330 KGNNFNDAFFKSMARVLNAQNQHISIPRRYALVIRDIWSMQLRLPAYHGKKAWSIFEHPR 389 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-WKKPLFPLTG 367 A L ++ ++ + ++ + TG Sbjct: 390 FRAAYDFLLLRSQSDPRQKELADWWTKFQEADASDRRQMLQKTG 433 >gi|119026636|ref|YP_910481.1| RNA nucleotidyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|118766220|dbj|BAF40399.1| probable RNA nucleotidyltransferase [Bifidobacterium adolescentis ATCC 15703] Length = 472 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 174/466 (37%), Gaps = 67/466 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + + + +VGG VRD L++ D+D T+ P++ I + + Sbjct: 7 PEAIELGRMFAAEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGHDGFW 66 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R++ ++TT RSD D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRREDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + +D GG NDL ++ D +D LR++R RF A G + I+ Sbjct: 127 AMALRVPELEFVDPFGGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IEP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L Sbjct: 186 ETAEALSDMVDRIEIVSAERVRDELVKLLLSDRPRAGIEALVDSGLADIVLPEIPALQL- 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-----KKSILSMAKKFS---LPREIRYFL- 295 ++ + + VFE + + R + L + D L +A P+ R+ Sbjct: 245 EIDEHHRHKDVFEHTMIVIERAVALETGSDGPVPAPDLTLRLAALLHDIGKPKTRRFEAG 304 Query: 296 --ISFFNCNFNQKTLSIPEIKKLFYLY--------------------------------- 320 +SF + ++ +K L + + Sbjct: 305 GKVSFHRHDAVGAKMTRKRLKALHFDHHMVEDVSELVNLHLRFHGYVEEPWTDSAVRRYV 364 Query: 321 -GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + + ++ + L L GD+ Sbjct: 365 KDAGPLYERLNRLTRADTTTQNKRKAMMFSAAMDEMEQRVRDLKEKEDFDAIRPDLNGDE 424 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 +++ I PG VG H + +++ + ++ L + Sbjct: 425 IMQLLSIEPGPMVGKAYKHMLEYRLDNG-PVERDVAVAELERWYKE 469 >gi|15640615|ref|NP_230244.1| polyA polymerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121730139|ref|ZP_01682536.1| polyA polymerase [Vibrio cholerae V52] gi|227080777|ref|YP_002809328.1| polyA polymerase [Vibrio cholerae M66-2] gi|229509186|ref|ZP_04398671.1| poly(A) polymerase [Vibrio cholerae B33] gi|229519604|ref|ZP_04409047.1| poly(A) polymerase [Vibrio cholerae RC9] gi|229608891|ref|YP_002879539.1| poly(A) polymerase [Vibrio cholerae MJ-1236] gi|254850828|ref|ZP_05240178.1| polyA polymerase [Vibrio cholerae MO10] gi|255744185|ref|ZP_05418138.1| poly(A) polymerase [Vibrio cholera CIRS 101] gi|262155757|ref|ZP_06028881.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1] gi|298500714|ref|ZP_07010517.1| polyA polymerase [Vibrio cholerae MAK 757] gi|9655025|gb|AAF93761.1| polyA polymerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628115|gb|EAX60652.1| polyA polymerase [Vibrio cholerae V52] gi|227008665|gb|ACP04877.1| polyA polymerase [Vibrio cholerae M66-2] gi|229344293|gb|EEO09268.1| poly(A) polymerase [Vibrio cholerae RC9] gi|229353758|gb|EEO18694.1| poly(A) polymerase [Vibrio cholerae B33] gi|229371546|gb|ACQ61969.1| poly(A) polymerase [Vibrio cholerae MJ-1236] gi|254846533|gb|EET24947.1| polyA polymerase [Vibrio cholerae MO10] gi|255738125|gb|EET93517.1| poly(A) polymerase [Vibrio cholera CIRS 101] gi|262030468|gb|EEY49108.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1] gi|297540495|gb|EFH76553.1| polyA polymerase [Vibrio cholerae MAK 757] Length = 457 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--KTEQMLDLVLDA 291 >gi|317482345|ref|ZP_07941365.1| tRNA adenylyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|316916225|gb|EFV37627.1| tRNA adenylyltransferase [Bifidobacterium sp. 12_1_47BFAA] Length = 471 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 178/468 (38%), Gaps = 67/468 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D ++ P++ I + + Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRWGHDGFW 66 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD+ D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDMYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G + I Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-KKSILSMAKKFSL-------PREIRYF-- 294 Q+ + + VFE + L R I L + D + + + P+ R+ Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304 Query: 295 -LISFFNCNFNQKTLSIPEIKKLFYLY--------------------------------- 320 +SF + + ++ +K L + + Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAVRRYV 364 Query: 321 -GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + Q + ++ + L L G++ Sbjct: 365 KDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDGNE 424 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++ G+ PG +G H + +++ + + L++ A Q Sbjct: 425 IMELLGLEPGPMIGRAYKHMLEYRLDNG-PVDHDVAVEELKRWYAEIQ 471 >gi|34540583|ref|NP_905062.1| polyA polymerase family protein [Porphyromonas gingivalis W83] gi|188994688|ref|YP_001928940.1| tRNA nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277] gi|34396896|gb|AAQ65961.1| polyA polymerase family protein [Porphyromonas gingivalis W83] gi|188594368|dbj|BAG33343.1| tRNA nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 483 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 81/441 (18%), Positives = 166/441 (37%), Gaps = 56/441 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP--TSI 75 I + ++ ++ +VGG VRD +N +DIDI + + +K + Sbjct: 19 IAEVADQLGLETYVVGGYVRDIFLNRPSKDIDIVAVGRGIDLAKAVAKKLGRKAHLSVFA 78 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQ 131 ++GT ++ + R + +V + D RRDFTINAL D+ Sbjct: 79 NFGTAQVKHGDLEIEFVGARKESYRHDSRKPIVEDGTLEDDLRRRDFTINALAVCLNSDR 138 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G ++D GL D+ + + D +D LR++R RF + I A Sbjct: 139 FGDLVDMFDGLCDMDDMLLCTPLDPDITFSDDPLRMMRAIRFASQLPGFTILPRDFEAIQ 198 Query: 192 KAKKGLK-ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 + +K +S+ER+ E+NK++ + P + G+ + +F ++ + Sbjct: 199 RNAHRIKEAVSAERVIEELNKIMLSPRPSIGLSLFEETGLMEYVFPELLALKGAETRDGI 258 Query: 242 -SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSIL-------------------- 279 D L+ + DSL LR+ L+ K Sbjct: 259 GHKDNLTHTYKVVDNLARHSDSLWLRWAALLHDIGKPRTKKFVGGQWTFHNHNFVGAKML 318 Query: 280 -SMAKKFSLPREIR-YFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKVMIAKLKIF 332 S+ K+ LP + + ++ + + L +++L + GD + + + Sbjct: 319 PSLFKRLRLPLDAKLKYVQKLVDLHMRPAALVDEGVTDSAVRRLLFEAGDDI-DDLMMLC 377 Query: 333 LALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 A + + +I + + H + P++G+++++ +G+ P + VG Sbjct: 378 EADITSKNPDKVRKYIDNYALVRHKFKEIEEKDHVRNFQPPISGEEIMQTFGLKPSRHVG 437 Query: 383 NILVHCKQEWINSSFQLSQED 403 I K+ ++ + E Sbjct: 438 TIKEAIKEAILDGAIPNDYEA 458 >gi|302185887|ref|ZP_07262560.1| poly(A) polymerase [Pseudomonas syringae pv. syringae 642] gi|330941558|gb|EGH44344.1| poly(A) polymerase [Pseudomonas syringae pv. pisi str. 1704B] gi|330954360|gb|EGH54620.1| poly(A) polymerase [Pseudomonas syringae Cit 7] gi|330977389|gb|EGH77338.1| poly(A) polymerase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 467 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274 >gi|53803591|ref|YP_114728.1| polyA polymerase [Methylococcus capsulatus str. Bath] gi|53757352|gb|AAU91643.1| polyA polymerase [Methylococcus capsulatus str. Bath] Length = 438 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 15/245 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + D + + +L L K ++ +VGG VRD L+ +D D+ T P+ + +F Sbjct: 54 ISRALISD-NALKVLYRLRKAGYQAYLVGGCVRDLLLGREPKDFDVVTDAHPEEIKAVFR 112 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS--------DLITDGRYAKVVFTRDWKAD 116 R + + ++ ++ T R+ + GR + + D Sbjct: 113 NCRL----IGRRFRLAHVHFGEEIIEVATFRALTREPHDEHVTEGGRILRDNVYGTIEED 168 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NALY + VIDYVGG++D RN +++ IGD R ED +R+LR RF Sbjct: 169 AFRRDFTVNALYYNISDFSVIDYVGGMDDHRNASLRLIGDPEQRYREDPVRMLRAIRFAV 228 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G + + L+ + + R++ EI KL A + + + +F +F Sbjct: 229 KLG-FTLHPSCAEPIHRLADLLRDIPAARLYDEIVKLFLAGYAVQTFEQLRHFRLFGSLF 287 Query: 236 LDVQE 240 + + Sbjct: 288 PETEN 292 >gi|238791217|ref|ZP_04634856.1| Poly(A) polymerase [Yersinia intermedia ATCC 29909] gi|238729350|gb|EEQ20865.1| Poly(A) polymerase [Yersinia intermedia ATCC 29909] Length = 474 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 134/335 (40%), Gaps = 33/335 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 44 ISRREISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 102 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 103 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGMLLRDNI 158 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 159 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 218 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L + R++ E KLL++ + + Sbjct: 219 RAVRFAAKL-DMTISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 277 Query: 229 GIFKEIFL-------DVQEISLDQLSQVIEAEQVFEWKID----SLLRFIVLISWQDKKS 277 +F+ +F ++ + ++++ + D F ++ + + Sbjct: 278 QLFQPLFPLIARNFTELHDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEH 337 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + ++ L + L + ++L++P+ Sbjct: 338 AQKLTQESGLAYYDAFALAMNDVLDEECRSLAVPK 372 >gi|322812373|pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) gi|322812374|pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii) gi|322812377|pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii) gi|322812378|pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii) Length = 415 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 18 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 74 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 75 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 133 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 134 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 193 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + ++ E KLL+A + +F+ +F + Sbjct: 194 MR-ISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 252 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 253 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 312 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 313 TYHDAFALAMNDVLDEACRSLAIPK 337 >gi|332672277|ref|YP_004455285.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulomonas fimi ATCC 484] gi|332341315|gb|AEE47898.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulomonas fimi ATCC 484] Length = 503 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 85/463 (18%), Positives = 154/463 (33%), Gaps = 69/463 (14%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 D I + L + +VGG VRD+ + D+D T+ PD I ++ Sbjct: 35 DAIELGELFRAAGHELALVGGPVRDAFLGRLSADLDFTTSATPDETEAILARWGDAHWDI 94 Query: 74 SISYGTIKII---------CRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFT 123 +GTI R ++TT R+D R +VVF + D RRDFT Sbjct: 95 GKEFGTIGARRMPGGRRGAERDVVVEVTTYRTDAYDPSSRKPEVVFGDTLEGDLSRRDFT 154 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NA+ + +D GL DL ++ D +D LR++R RF A G + Sbjct: 155 VNAMAVRLPELTFVDPFDGLADLARGVLRTPVDPRQSFDDDPLRMMRAARFAAQLG-FTV 213 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + A + + I+S+ER+ E++KLL A P + + + G+ + ++ + Sbjct: 214 EPAARAAIEDMAERIGIVSAERVRDELSKLLVAAQPRAGLEVLVDTGLADHVLPELPALR 273 Query: 243 LDQLSQVIEAEQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM- 281 L ++ + + V+E D +LR L+ K Sbjct: 274 L-EIDEHHRHKDVYEHSLTVLDKAIALETGPDGPVPGPDLVLRLAALLHDIGKPRTRRFE 332 Query: 282 ---------------------AKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLF 317 K+ + + + + Sbjct: 333 PGGGVSFHHHEVVGAKLAAKRLKELRFDKATVQAVSRLTELHLRFHGYGEGGWTDSAVRR 392 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTG 367 Y+ ++ +L + + D+ L G Sbjct: 393 YVTDAGPLLERLHRLTRSDCTTRNLRKAARLSAAYDDLETRIARLQEQEELAAIRPDLDG 452 Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +++ GI PG++VG H + ++ E LL+ Sbjct: 453 TQIMEILGIGPGREVGAAYKHLLELRMDRGPLGPDEARAELLQ 495 >gi|289628855|ref|ZP_06461809.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651028|ref|ZP_06482371.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 2250] gi|330867395|gb|EGH02104.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890665|gb|EGH23326.1| poly(A) polymerase [Pseudomonas syringae pv. mori str. 301020] Length = 467 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274 >gi|147117|gb|AAA24303.1| plasmid copy number protein [Escherichia coli] Length = 410 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 133/318 (41%), Gaps = 29/318 (9%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 + LNK ++ +VGG VRD L+ +D D+ T P++V ++F R + Sbjct: 1 MYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVAKLFRNCRL----VGRRFR 56 Query: 79 TIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLRRDFTINA 126 ++ + ++ T R +G + + D+ RRDFTIN+ Sbjct: 57 LAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINS 116 Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G + I + Sbjct: 117 LYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMR-ISPE 175 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + L + R++ E KLL+A + +F+ +F + + Sbjct: 176 TAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTEN 235 Query: 246 LSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 +E EQV + +++ F + + ++ ++A++ L + Sbjct: 236 GDSPMERIIEQVLKNTDTRIHNDMRVNPTFLFAAMFWYPLLETAQNIAQESGLTYHDAFA 295 Query: 295 LISFFNCNFNQKTLSIPE 312 L + ++L+IP+ Sbjct: 296 LAMNDVLDEACRSLAIPK 313 >gi|300721909|ref|YP_003711187.1| poly(A) polymerase I [Xenorhabdus nematophila ATCC 19061] gi|297628404|emb|CBJ88969.1| poly(A) polymerase I [Xenorhabdus nematophila ATCC 19061] Length = 455 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 156/399 (39%), Gaps = 43/399 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LNK ++ +VGG VRD L++ +D DIAT P++V ++F Sbjct: 25 ISRKDISD-NALKVLYRLNKSGFQAYLVGGGVRDLLLHKQPKDFDIATNATPEQVRKLFR 83 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR-------------SDLITDGRYAKVVFTR 111 R + I+ ++ T R S G + Sbjct: 84 NCRL----VGRRFRLAHIMFGPDVIEVATFRGPHDQVESNDRSQSHKAQSGMLLRDNIFG 139 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D+ RRDFTIN+LY + + DYVGG+ DL I+ IGD R ED +R+LR Sbjct: 140 SVEEDAARRDFTINSLYYGIEDFALRDYVGGMADLNEGIIRLIGDPEIRYREDPVRMLRA 199 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + + I+ + L + S R++ E KLL++ + + + Sbjct: 200 VRFASKL-DMTIEPATAEPIPRLAFLLNDIPSARLFEESLKLLQSGQGYSTYKLLCKYNL 258 Query: 231 FKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279 F+ +F +Q E L Q+ + + + +++ F ++ + + Sbjct: 259 FQPLFPMIQRGLTQTGDSPMEKLLVQVLKNTDHRIRDDKRVNPAFLFAAMLWYPLIEHAE 318 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK------------KLFYLYGDKVMIA 327 ++++ L + L + ++++IP+ +L G + Sbjct: 319 KLSQEGGLQYYDAFALAMNDILDEQCRSIAIPKRHTTTMRDIWLLQLRLPRRQGRRANKL 378 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 Y+ L + + L +++HW T Sbjct: 379 MEHPKFRAAYDLLELRASIEPRHELKELVHWWTDFQQST 417 >gi|322812372|pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T P++V ++F R Sbjct: 17 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 74 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR 132 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A G Sbjct: 133 RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLG 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + ++ E KLL+A + +F+ +F + Sbjct: 193 MR-ISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTI 251 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E EQV + +++ F + + ++ +A++ L Sbjct: 252 TRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGL 311 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 + L + ++L+IP+ Sbjct: 312 TYHDAFALAMNDVLDEACRSLAIPK 336 >gi|22124701|ref|NP_668124.1| poly(A) polymerase I [Yersinia pestis KIM 10] gi|108808891|ref|YP_652807.1| poly(A) polymerase I [Yersinia pestis Antiqua] gi|108810855|ref|YP_646622.1| poly(A) polymerase I [Yersinia pestis Nepal516] gi|145600216|ref|YP_001164292.1| poly(A) polymerase I [Yersinia pestis Pestoides F] gi|153948549|ref|YP_001402297.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 31758] gi|165936780|ref|ZP_02225347.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275] gi|170025685|ref|YP_001722190.1| poly(A) polymerase I [Yersinia pseudotuberculosis YPIII] gi|218930416|ref|YP_002348291.1| poly(A) polymerase I [Yersinia pestis CO92] gi|270489241|ref|ZP_06206315.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27] gi|21957515|gb|AAM84375.1|AE013681_5 poly(A) polymerase I [Yersinia pestis KIM 10] gi|108774503|gb|ABG17022.1| poly(A) polymerase [Yersinia pestis Nepal516] gi|108780804|gb|ABG14862.1| poly(A) polymerase [Yersinia pestis Antiqua] gi|145211912|gb|ABP41319.1| poly(A) polymerase [Yersinia pestis Pestoides F] gi|152960044|gb|ABS47505.1| poly(A) polymerase [Yersinia pseudotuberculosis IP 31758] gi|165915429|gb|EDR34039.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275] gi|169752219|gb|ACA69737.1| poly(A) polymerase [Yersinia pseudotuberculosis YPIII] gi|262363166|gb|ACY59887.1| poly(A) polymerase I [Yersinia pestis D106004] gi|270337745|gb|EFA48522.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27] Length = 491 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 62 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFR 120 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 121 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 176 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 177 FGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 236 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I + + L+ + R++ E KLL++ + + Sbjct: 237 RAVRFAAKL-DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 295 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 296 QLFQPLFPLIARNFTEQHDSPMER 319 >gi|261338862|ref|ZP_05966720.1| hypothetical protein ENTCAN_05058 [Enterobacter cancerogenus ATCC 35316] gi|288318685|gb|EFC57623.1| polyA polymerase [Enterobacter cancerogenus ATCC 35316] Length = 447 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 34/374 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T+ P++V ++F R Sbjct: 27 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRL--- 83 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 84 -VGRRFRLAHVMFGPEIIEVATFRGHHEASAADRTTSQRGQNGMLLRDNIFGSIEEDAQR 142 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG R ED +R+LR RF A Sbjct: 143 RDFTINSLYYSVADFTVRDYVGGMQDLKDGLIRLIGTPETRYREDPVRMLRAVRFAAKLN 202 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + + + R++ E KLL+A + +F+ +F + Sbjct: 203 MR-ISPETAEPIPRLATLINDVPPARLFEEALKLLQAGYGFETYNLLREYSLFQPLFPTI 261 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV + +++ F + + ++ + ++ L Sbjct: 262 TRYFTENGDSPMERMIAQVLKNTDTRIHNDMRVNPAFLFSAMFWYPLLETAQRITQESGL 321 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + L + + +TL+IP+ + + + ++ + K L + + Sbjct: 322 AYYDAFALAANDVLDEACRTLAIPKRITTLVRDIWQLQLRMSRRQGKRAWKLMEHP-KFR 380 Query: 344 DTCFILQVLSDIIH 357 +L + ++I Sbjct: 381 AAFDLLSLRAEIEK 394 >gi|323702567|ref|ZP_08114230.1| CBS domain containing protein [Desulfotomaculum nigrificans DSM 574] gi|323532541|gb|EGB22417.1| CBS domain containing protein [Desulfotomaculum nigrificans DSM 574] Length = 910 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 92/419 (21%), Positives = 174/419 (41%), Gaps = 32/419 (7%) Query: 17 NILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 I+++L K + VGG VRD L+ + D+D+ + + Sbjct: 462 RIMNILTKAGEVADKLNYQVYAVGGLVRDVLLKVENFDVDLVVEGNGILMANQLAAVLGG 521 Query: 70 VIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + T +GT +II Y D+ T R + V + D RRDFTINA+ Sbjct: 522 RVRTHEKFGTAEIIFPDGYWVDVVTARVEYYEYPAALPQVEQSSLRHDLYRRDFTINAMA 581 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 + G+++DY G DL+ I+ + + +ED RILR RF Y + I+ Sbjct: 582 VALNPGRFGELVDYFNGREDLQIGAIRVLHN--LSFVEDPTRILRAIRFEQRY-DMAIEP 638 Query: 185 DGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--- 239 + +A + + LS+ER+W E+ +LE +P + + M G++ +F ++ Sbjct: 639 QTMRLIKEAVREKVIARLSTERMWGELKSILEEADPEHMLDRMSELGVWDYLFPEITFWE 698 Query: 240 -EISLDQLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPREIRYF- 294 + + ++ Q + + + W + L F+ ++ W + + + ++++L R Sbjct: 699 VQPVISEMPQALMILRNWGWAEPAEKWLPYFLAILHWTTQDTAYQICQRYNLGRRQTDKV 758 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 L + + + LS PE L L +K++ + L L ++ +++ + Sbjct: 759 LDTIAHWREALRRLSAPEDVPLSAL--NKIVQTLPREAYPLFLTLLEDKNAIRRFRLVME 816 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL---HHLLRK 410 +H K + G D+ G PG L Q ++ Q +E+L L K Sbjct: 817 SVH--KHKPTVNGKDIRDMGFKPGPLYRRALDSVWQARLDGLVQTREEELAYVRAYLEK 873 >gi|114048784|ref|YP_739334.1| poly(A) polymerase [Shewanella sp. MR-7] gi|113890226|gb|ABI44277.1| poly(A) polymerase [Shewanella sp. MR-7] Length = 435 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 17/247 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F Sbjct: 8 ISRKQIS-ENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFR 66 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWK 114 R + I+ + ++ T R +GR + + Sbjct: 67 NCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGDSNEKISKANAEGRLLRDNVYGEID 122 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NALY D + Y GG++DL+ T++ IGD R ED +R+LR RF Sbjct: 123 EDAERRDFTVNALYYDISDYSIRSYGGGMDDLKAGTLRLIGDPETRYREDPVRMLRAVRF 182 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 ID + LK + + R++ E+ KL A + M +F Sbjct: 183 ATKL-SMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFAP 241 Query: 234 IFLDVQE 240 +F V Sbjct: 242 LFPQVDA 248 >gi|45435001|gb|AAS60561.1| poly(A) polymerase [Yersinia pestis biovar Microtus str. 91001] Length = 473 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 44 ISRRDISD-NPLKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFR 102 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 103 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 158 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 159 FGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 218 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I + + L+ + R++ E KLL++ + + Sbjct: 219 RAVRFAAKL-DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 277 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 278 QLFQPLFPLIARNFTEQHDSPMER 301 >gi|161760588|ref|YP_069273.2| poly(A) polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186894092|ref|YP_001871204.1| poly(A) polymerase I [Yersinia pseudotuberculosis PB1/+] gi|186697118|gb|ACC87747.1| poly(A) polymerase [Yersinia pseudotuberculosis PB1/+] Length = 488 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 62 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFR 120 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 121 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 176 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 177 FGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 236 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I + + L+ + R++ E KLL++ + + Sbjct: 237 RAVRFAAKL-DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 295 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 296 QLFQPLFPLIARNFTEQHDSPMER 319 >gi|213970146|ref|ZP_03398277.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1] gi|213925027|gb|EEB58591.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1] Length = 491 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 67 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 122 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 123 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 182 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 183 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 241 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + +F+ +F Sbjct: 242 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 298 >gi|229822681|ref|YP_002884207.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Beutenbergia cavernae DSM 12333] gi|229568594|gb|ACQ82445.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Beutenbergia cavernae DSM 12333] Length = 483 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 83/442 (18%), Positives = 147/442 (33%), Gaps = 58/442 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +D+ + L G + +VGG VRD+ + D+D AT+ P++ I ++ V Sbjct: 24 AADVDPLGDLFAAGGHEIALVGGPVRDAFLGRGSSDLDFATSARPEQTEAILARWGDAVW 83 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD 130 ++GTI ++TT R++ G R V + D RRDFTINA+ Sbjct: 84 DVGRAFGTIGAGRGDVVVEVTTYRTEAYDAGSRKPAVEYGDTLDGDLSRRDFTINAMAVR 143 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +D GL+DL ++ A +D LR++R RF A ++ D + A Sbjct: 144 LPDLTFVDPHHGLDDLAAHVLRTPVSAEQSFDDDPLRMMRAARFAAQL-RVDVAPDVMAA 202 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----- 244 L I+S+ER+ +E+ KLL A P + M G+ + ++ + L+ Sbjct: 203 MTAMAGRLAIVSAERVQAELTKLLLAPAPRRGLELMVETGLADVVLPELPAMKLEIDEHH 262 Query: 245 -----------QLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKS------------- 277 L Q I+ E + D +LR L+ K + Sbjct: 263 RHKDVYEHSLTVLDQAIDLETGPDGPVPAPDLVLRLAALLHDVGKPATRRNEPGGRVSFH 322 Query: 278 ---------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVM 325 + + + + + + Y+ Sbjct: 323 HHEVVGAKLARKRLAALRYDKATIADVTTLIALHLRFHGYGDGAWTDSAVRRYVTDAGPE 382 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YG 374 + +L + + D+ L G ++ G Sbjct: 383 LERLHRLTRADCTTRNRRKAERLSHAYDDLERRIAELAEKEELAAIRPDLDGAAIMATLG 442 Query: 375 IPPGKKVGNILVHCKQEWINSS 396 I PG VG + + Sbjct: 443 IGPGPVVGEAYRFLLELRMERG 464 >gi|332521230|ref|ZP_08397688.1| Polynucleotide adenylyltransferase region [Lacinutrix algicola 5H-3-7-4] gi|332043323|gb|EGI79520.1| Polynucleotide adenylyltransferase region [Lacinutrix algicola 5H-3-7-4] Length = 472 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 92/462 (19%), Positives = 179/462 (38%), Gaps = 61/462 (13%) Query: 5 VQHKWFHDSDLINILSL-LNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRI 62 + HK ++ I+S + S ++GG VRD L+ +DIDI + + Sbjct: 1 MNHKKALKHNIFKIISQSAKELNLDSYVIGGFVRDYLLQRGNAKDIDIVAVGSGIALAKQ 60 Query: 63 FSK--TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 +K + +YGT + + R + + VV + D RR Sbjct: 61 VAKNLPNKPKVQVFKTYGTAMLKYNDIEVEFVGARKESYNENSRNPVVENGTLQDDQNRR 120 Query: 121 DFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DF+INAL D G ++D G+ DL+N+ I+ D +D LR++R RF Sbjct: 121 DFSINALALDLSQDNFGDLLDPFNGVEDLQNKIIRTPLDPDITYSDDPLRMMRAIRFATQ 180 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G I+ + L A + +KI++ ERI E+NK+LE+K P + + G+ K I Sbjct: 181 LG-FTIEKESLDAITRNNNRIKIITKERIVVELNKILESKTPSIGFLLLEQTGLLKHILP 239 Query: 237 DVQEI-SLDQLSQVIEAEQVFE----------WKIDSLLRFIVLIS-------------- 271 ++ + +D++ + + D LR+ L+ Sbjct: 240 ELTALKGIDEVEGQRHKDNFYHTLEVVDNIAKHTDDVWLRWAALLHDIGKAPTKKFSKKV 299 Query: 272 --------WQDKKSILSMAKKFSLPREIRYFLISF------FNCNFNQKTLSIPEIKKLF 317 ++ K + + K+ +P + + Q ++ +++L Sbjct: 300 GWTFHAHEFEGSKMVYHLFKRLKMPLNEKMKFVQKLVFMSSRPIVLAQDIVTDSAVRRLV 359 Query: 318 YLYGDKVMIAKLKIFLAL----------HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 + GD + + + A Y+N I++V + + P+TG Sbjct: 360 FDAGD-YVDDLMTLCEADITTKNPKKFNKYHNNFKIVREKIIEV-EEKDSIRNFQPPVTG 417 Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++++K + + P +++G I K+ + E +L+ Sbjct: 418 EEIMKTFNLKPSREIGIIKEAIKEAILEGEIPNEHEAAFNLM 459 >gi|322515233|ref|ZP_08068231.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976] gi|322118738|gb|EFX90944.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976] Length = 510 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 78/426 (18%), Positives = 157/426 (36%), Gaps = 55/426 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 85 KNALVIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGHQCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 142 -IGRRFRLAHIVFGRDIYEVATFRADHSNHSSDKISKVSEEGMLLRDNVYGTLREDAQRR 200 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 201 DFTVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVIRYQEDPVRMLRAVRFMAKLDM 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--- 236 +D + LK + + R++ E KLL++ M G+F+++F Sbjct: 261 F-LDKPSDAPIRELAHLLKNIPAARLFDESLKLLQSGQGFKTYQLMRQYGLFEQLFPVLV 319 Query: 237 ---------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + + + L+ E + +++ F L+ + ++ + + + L Sbjct: 320 PFFTEHNDSNAERMLSKALNSTDERIRD-NLRVNPAFLFAALLWYPLREKMEVLKNEGGL 378 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 L + N + L + + F + Q T Sbjct: 379 NSHDAMMLAA------NDVLDESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLE 432 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLH 405 ++ + + G D+V W F + ++ Sbjct: 433 YVKFRAGFDLL-VMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEML 476 Query: 406 HLLRKL 411 +R L Sbjct: 477 KAVRNL 482 >gi|120406990|ref|YP_956819.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] gi|119959808|gb|ABM16813.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] Length = 483 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 78/451 (17%), Positives = 168/451 (37%), Gaps = 58/451 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + L + +VGG+VRD+L+ D+D T PD+++ + T Sbjct: 25 LRELGRLFGDHGHQLYLVGGSVRDALLGRLGTDLDFTTDARPDQMLPFLRGWGDALWDTG 84 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132 I +GT+ + +ITT R+D R+ +V + + D +RRDFT+NA+ Sbjct: 85 IDFGTLGVAKGGDRLEITTFRADSYDQVSRHPEVRYGDNLADDLVRRDFTVNAMAVRITP 144 Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +D + GL LR++ + + +D LR+LR RF + G + A Sbjct: 145 GGPTEFLDPLDGLAALRDQVLDTPSEPEVSFSDDPLRMLRAARFVSQLG-FAVAPRVRRA 203 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + L +++ER+ +E++KLL +P+ + M G+ + ++ + + + + Sbjct: 204 LQEMAPQLSRITAERVAAELDKLLLGADPVAGLNLMVETGLGDVVLPEIGAMRM-AIDEH 262 Query: 250 IEAEQVFEWK---------------IDSLLRFIVLISWQDKKSIL--------------- 279 + + V++ D +LR+ L+ K + Sbjct: 263 HQHKDVYQHSLTVLRQAMDLEGPEGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEV 322 Query: 280 -------SMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKL 329 ++ +++ + + + Y+ ++ +L Sbjct: 323 VGAKMTRKRLRELKYSKQMISDVSQLVYLHLRFHGYGDGRWTDSAVRRYVTDAGPLLGQL 382 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 + + + D+ + + G+++++ IPPG Sbjct: 383 HKLVRADCTTRNKRRAARLQASYDDLERRIEELAAKEDLARVRPDIDGNEIMRILDIPPG 442 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +VG H K+ ++ E + LL+ Sbjct: 443 PQVGQAWNHLKELRLDRGPLEYDEAVAELLK 473 >gi|298485543|ref|ZP_07003625.1| Poly(A) polymerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159943|gb|EFI00982.1| Poly(A) polymerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320326088|gb|EFW82145.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. B076] Length = 467 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274 >gi|304396621|ref|ZP_07378502.1| poly(A) polymerase [Pantoea sp. aB] gi|304356130|gb|EFM20496.1| poly(A) polymerase [Pantoea sp. aB] Length = 443 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 77/415 (18%), Positives = 151/415 (36%), Gaps = 55/415 (13%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F Sbjct: 10 TISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLF 68 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRS----DLITDGRYA----------KVVF 109 R + ++ + ++ T R + I + R + + Sbjct: 69 RNCRL----VGRRFRLAHVMFGPEVIEVATFRGHHQVEEIAEDRNSSQRAQSGMLLRDNI 124 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRD TIN+LY V DYVGG++DL I+ IGD R ED +R+L Sbjct: 125 FGSIEDDAQRRDLTINSLYYSVADFSVRDYVGGISDLEQGIIRLIGDPETRYREDPVRML 184 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L+ + R++ E KLL+A + + + Sbjct: 185 RVARFAAKLNMR-IAPETAEPIPRLASLLRDIPPARLFEESLKLLQAGYGYSTYLKLCEY 243 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKS 277 +F+ +F + + +E QV + +++ F + + ++ Sbjct: 244 QLFQPLFPTLARNFTENSDSHMERMLAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPQLEA 303 Query: 278 ILSMA-----------------------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 +A + ++P+ I + + Sbjct: 304 AERIAQESGLTYFEAFAMAMNDTLDEACRALAIPKRITSLIRDIWLLQLRMSRRHGKRAW 363 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 KL + L + + N + + + + +K + GDD Sbjct: 364 KLMEHPKFRAAYDLLALRAEVENNPELLRLSQWWGEFQVAAPPHQKNMLNNLGDD 418 >gi|297572329|ref|YP_003698103.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arcanobacterium haemolyticum DSM 20595] gi|296932676|gb|ADH93484.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Arcanobacterium haemolyticum DSM 20595] Length = 497 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 89/461 (19%), Positives = 167/461 (36%), Gaps = 60/461 (13%) Query: 7 HKWFHD--SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 HK + ++ + S+ + + +VGG VRD+L+ L + D D T+ PD + + Sbjct: 30 HKRLSELPKAILELGSIFARNGHELAMVGGPVRDALLGLPIHDYDFTTSARPDETEELLA 89 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFT 123 +GTI ++TT R++ + R V + + D RRDFT Sbjct: 90 SWGGAHWDIGREFGTIGASRDGLVVEVTTYRAEEYDAESRKPGVHYGDSLEGDVTRRDFT 149 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NA+ ++ D GGL+DL ++ A +D LRI+R RF A G Sbjct: 150 VNAMAIRLPSMELADTTGGLDDLVAGVLRTPVTARQSFDDDPLRIMRAARFAAQLGFDVA 209 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI- 241 D D A + L+I+S ER+ +E+++L+ + +P + + G+ + ++ + Sbjct: 210 D-DVREAMTEMASRLEIVSVERVQAELHRLMISPHPRKGLELLVETGVADIVLPELSNLQ 268 Query: 242 ---------------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKS------ 277 +L L Q I E + + D +LRF L+ K + Sbjct: 269 DTVDEHGRHKDVYTHTLTVLDQAIALETDADGAVPRPDFILRFAALMHDIGKPATRRYES 328 Query: 278 ----------------ILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKL 316 K + + + ++ S +++ Sbjct: 329 DGSVTFHAHDIVGARMAAKRMKALRFDKATTKAVARLVELHLRFHGYGEQRWSDSAVRRY 388 Query: 317 FYLYGDKV-MIAKLKIFLALHYNNLTHQ-------DTCFILQVLSDIIHWKKPLFPLTGD 368 G ++ + +L N Q D + +L + L G Sbjct: 389 VTDAGPQLERLNRLTRADVTTRNRRKAQWLAAGMDDLEERIALLKEQEEVDAIRPDLDGG 448 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +++ G+ PG +VG + + +E LL Sbjct: 449 KIMELLGLTPGPEVGKAYKFLLELRMEEGPLGEEEAARRLL 489 >gi|153803792|ref|ZP_01958378.1| polyA polymerase [Vibrio cholerae MZO-3] gi|124120672|gb|EAY39415.1| polyA polymerase [Vibrio cholerae MZO-3] Length = 351 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTSDHSS--KTEQMLDLVLDA 291 >gi|325276181|ref|ZP_08141985.1| poly(A) polymerase [Pseudomonas sp. TJI-51] gi|324098690|gb|EGB96732.1| poly(A) polymerase [Pseudomonas sp. TJI-51] Length = 462 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 19/239 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRHAVNIVERLQAAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ D GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAPHTEDDQNDSHRSSHNASGRILRDNVYGTLEEDAQ 154 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 155 RRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ + L+ + R++ E KL + A + + +F+ +F Sbjct: 215 -DFGIEKHTFKPIRELAPLLREIPPARLFEESLKLFLSGQGAIAFEMLVDLELFEPLFP 272 >gi|117921843|ref|YP_871035.1| poly(A) polymerase [Shewanella sp. ANA-3] gi|117614175|gb|ABK49629.1| poly(A) polymerase [Shewanella sp. ANA-3] Length = 435 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 17/247 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F Sbjct: 8 ISRKQIS-ENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFR 66 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWK 114 R + I+ + ++ T R +GR + + Sbjct: 67 NCRV----VGRRFRLAHIVFGRDVIEVATFRGHHGDSNEKISKANAEGRLLRDNVYGEID 122 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDFT+NALY D + Y GG+ DL+ T++ IGD R ED +R+LR RF Sbjct: 123 EDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAVRF 182 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 I+ + LK + + R++ E+ KL A + M +F Sbjct: 183 ATKL-SMAIEEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFAP 241 Query: 234 IFLDVQE 240 +F V Sbjct: 242 LFPQVDA 248 >gi|183222200|ref|YP_001840196.1| putative tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912254|ref|YP_001963809.1| poly A polymerase family of protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776930|gb|ABZ95231.1| Poly A polymerase family of protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780622|gb|ABZ98920.1| Putative tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 430 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 99/407 (24%), Positives = 170/407 (41%), Gaps = 29/407 (7%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 H L I L + +VGG+VRD +M ++ D+ T P V ++F Sbjct: 12 PTLHKKHLDTINFALKNAGFECYLVGGSVRDLVMKKIPKEYDLTTNAEPKDVKKLFR--- 68 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTIN 125 VI T I +GT+ ++ K +++TT R D DGR V F D RRDFT+N Sbjct: 69 -TVIDTGIEHGTVTVVLDKVNYEVTTYRIDKDYVDGRRPGHVEFGTTLHEDLKRRDFTMN 127 Query: 126 ALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 AL D G +ID GL D++++TI+ IG+ R ED LR +R RF + K ID Sbjct: 128 ALAYDLTSGVLIDDHNGLADIKSKTIRTIGNPIQRFTEDGLRPIRALRFASTLNFK-IDE 186 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----- 239 + A + K K +S ER EI K + P I + +F+ +Q Sbjct: 187 ETKKAIHQTKHITKKISLERFQDEILKSFLGEKPSVMIALLVEENLFQVFLPSMQLDLIP 246 Query: 240 -EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP----REIRYF 294 EI L++L++V + + F ++ K + + + ++ F Sbjct: 247 NEIFLEELNKVSKDLVGLQLSFA----FYSILPNVSLKELETYLRSLKFSGQNIKDTLLF 302 Query: 295 --LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL--HYNNLTHQDTCFILQ 350 LI +N + +L+ +IKK F + ++ ++ + + +L Sbjct: 303 SELIQKWNQYPDLNSLTTYDIKKYFLAPVKRHFQSRYELNEIFFQKLTPIFGNEIMKLLS 362 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV--GNILVHCKQEWINS 395 + ++ + G+ + + P K+ G +L + + S Sbjct: 363 IWNENPPLLLSDLSINGNHLSE-NFPDLPKLKFGEVLSFLLELVLQS 408 >gi|213693333|ref|YP_002323919.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524794|gb|ACJ53541.1| metal dependent phosphohydrolase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459515|dbj|BAJ70136.1| putative RNA nucleotidyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 471 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 87/470 (18%), Positives = 170/470 (36%), Gaps = 71/470 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D ++ P++ I + + Sbjct: 7 PEAIELGRLFAEQGYELALVGGPVRDLLLHRRSHDLDFCSSARPEQFEPILRRWGHDGFW 66 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT RSD D R +V + + D RRDFT+N Sbjct: 67 DMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVN 126 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G + I Sbjct: 127 AMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IAP 185 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 D A + + I+S+ER+ E+ KLL + P + + G+ +F ++ + L Sbjct: 186 DAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIPALQL- 244 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD------------------------------ 274 Q+ + + VFE + L R I L + D Sbjct: 245 QIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRRFEPG 304 Query: 275 ------------KKSILSMAKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLF 317 K K + + N + + + +++ Sbjct: 305 GKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDISELVNMHLRFHGYVDEPWTDSAVRRYV 364 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTG 367 G + +L + Q + ++ + L L G Sbjct: 365 KDAGH--LYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDLDG 422 Query: 368 DDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +++++ G+ PG +G H + +++ + + L++ A Q Sbjct: 423 NEIMELLGLEPGPMIGRAYKHMLEYRLDNG-PVDHDVAVEELKRWYAEIQ 471 >gi|283782575|ref|YP_003373329.1| tRNA adenylyltransferase [Gardnerella vaginalis 409-05] gi|298253265|ref|ZP_06977057.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella vaginalis 5-1] gi|283441848|gb|ADB14314.1| tRNA adenylyltransferase [Gardnerella vaginalis 409-05] gi|297532660|gb|EFH71546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella vaginalis 5-1] Length = 475 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 84/448 (18%), Positives = 158/448 (35%), Gaps = 66/448 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D T+ P+ I + + Sbjct: 9 PEAIELGRLFAERHYELALVGGPVRDMLLHRVSHDLDFCTSARPEEFEPILRRWGHDGFW 68 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ +ITT RSD+ D R +V + + D RRDFT+N Sbjct: 69 DMGRKFGTLGAMRRRADGTEVKVEITTYRSDVYDPDSRKPEVQYGDTLEGDLSRRDFTVN 128 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G +I++ Sbjct: 129 AMALRVPDLQFVDPFGGASDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FSIEA 187 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + L I+S+ERI EI K+L + P + + GI + + ++ + L Sbjct: 188 NTAEAIVDMADRLDIVSAERIRDEITKMLLSDRPRKGLEALVESGIAQRVLPEIPALQL- 246 Query: 245 QLSQVIEAEQVFEW--------------------KIDSLLRFIVLISWQDKKSILSM--- 281 ++ + + VFE D LR L+ K Sbjct: 247 EIDEHHRHKDVFEHTMMVLERAIALETDQEGPVPSPDLTLRLAALLHDIGKPKTRKFEDG 306 Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIP---EIKKLFYL 319 K + + N + + Y+ Sbjct: 307 GKVSFHHHDVVGAKMTRKRLKALHFDHHLIEDVTELVNLHLRFHGYVDEPWTDSAVRRYV 366 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + + + ++ K L + G++ Sbjct: 367 KDSGHLYERLNRLTRADATTQNRRKSLMFEHAMDEMEERVKELKKQEDFNAIRPDVDGNE 426 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSS 396 +++ + PG VG H +++ Sbjct: 427 IMQLLHLQPGPTVGEAYKHMLDYRLDNG 454 >gi|306824009|ref|ZP_07457383.1| tRNA adenylyltransferase [Bifidobacterium dentium ATCC 27679] gi|304553007|gb|EFM40920.1| tRNA adenylyltransferase [Bifidobacterium dentium ATCC 27679] Length = 456 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 84/442 (19%), Positives = 161/442 (36%), Gaps = 70/442 (15%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGT 79 + + + +VGG VRD L++ D+D T+ P++ I + R +GT Sbjct: 1 MFAEEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDMGRKFGT 60 Query: 80 IKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + + R++ ++TT RSD D R +V + + D RRDFT+NA+ Sbjct: 61 LGAMRRREDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPD 120 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GG NDL ++ + +D LR++R RF A G + I+ + A Sbjct: 121 LEFVDPFGGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSD 179 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + + I+S+ER+ E+ KLL + P I + + G+ +F ++ + L ++ + Sbjct: 180 MVERIDIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRH 238 Query: 253 EQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM----------- 281 + VFE D LR L+ K Sbjct: 239 KDVFEHTMIVVDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEPGGKVSFHHH 298 Query: 282 -----------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVM 325 K + + N + ++ + +++ G + Sbjct: 299 DAVGAKMTRKRLKALRFDHHMIEDVSELVNLHLRFHGYVEEPWTDSAVRRYVKDAGP--L 356 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVKY-G 374 +L + + ++ + L L GD++++ G Sbjct: 357 YERLNRLTRADATTQNRRKAMIFSSAMDEMEQRVRDLKKKEDFDAIRPDLNGDEIMQLLG 416 Query: 375 IPPGKKVGNILVHCKQEWINSS 396 I PG VG H + +++ Sbjct: 417 IEPGPMVGRAYKHMLEYRLDNG 438 >gi|257484045|ref|ZP_05638086.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987743|gb|EGH85846.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013061|gb|EGH93117.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 467 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274 >gi|229816983|ref|ZP_04447265.1| hypothetical protein BIFANG_02238 [Bifidobacterium angulatum DSM 20098] gi|229785728|gb|EEP21842.1| hypothetical protein BIFANG_02238 [Bifidobacterium angulatum DSM 20098] Length = 478 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 178/466 (38%), Gaps = 67/466 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVI 71 + + + + + +VGG VRD L++ D+D T+ P++ I K R Sbjct: 13 PEAMELGEMFAAEGFELALVGGPVRDLLLHRRSHDLDFCTSARPEQFEPILRKFGRDGFW 72 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ ++TT R+D D R +V + + D RRDFT+N Sbjct: 73 DMGRKFGTLGAMRRRADGTEVQVEVTTYRTDAYNPDSRKPEVAYGDTLEGDLSRRDFTVN 132 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + +D GG NDL ++ D +D LR++R RF A G +I+ Sbjct: 133 AMALRVPELEFVDPFGGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLG-FSIEP 191 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A ++I+S+ER+ E+ K L + P I + G+ +F ++ + L Sbjct: 192 ETAEAMYDMTDRIRIVSAERVRDELVKTLLSDRPRAGIEALVESGLADIVFPEIPALEL- 250 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQD-----KKSILSMAKKFS---LPREIRYFL- 295 Q+ + + VFE + L R + L + D L +A P+ R+ Sbjct: 251 QIDEHHRHKDVFEHTMIVLDRAVALETDDDGPVPRPDLTLRLAALMHDIGKPKTRRFEAG 310 Query: 296 --ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH----------- 342 +SF + + L+ ++ L + + +++L + + Sbjct: 311 GKVSFHHHDVVGAKLTRKRLRALHFDHHLVEDVSELVNLHLRFHGYVDEPWTDSAVRRYV 370 Query: 343 QDTCFILQVLSDIIH---------------------------------WKKPLFPLTGDD 369 +D + + L+ + + + G++ Sbjct: 371 KDAGHLYERLNRLTRADATTQNRRKAMVFASAMDEMEDRVRELKKKEDFDAIRPDINGNE 430 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++ G+ PG +G H +++ + + L++ + Sbjct: 431 IMDLLGLEPGPMIGKAYRHMLDYRLDNG-PVDHDVAVAELKRWYSE 475 >gi|157147427|ref|YP_001454746.1| poly(A) polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084632|gb|ABV14310.1| hypothetical protein CKO_03226 [Citrobacter koseri ATCC BAA-895] Length = 454 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 18/254 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGNDSDRATSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL++ I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKL- 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 209 DMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGFETYKKLREYSLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA 252 + +E Sbjct: 269 TRYFTENGDSAMER 282 >gi|123441078|ref|YP_001005067.1| poly(A) polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088039|emb|CAL10827.1| poly(A) polymerase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 440 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 11 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 69 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 70 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNI 125 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 126 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 185 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L + R++ E KLL++ + + Sbjct: 186 RAVRFAAKL-DMTISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 244 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + + +E Sbjct: 245 QLFQPLFPLIARNFTEHHDSAMER 268 >gi|329944766|ref|ZP_08292845.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328529902|gb|EGF56792.1| tRNA adenylyltransferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 503 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 79/443 (17%), Positives = 160/443 (36%), Gaps = 62/443 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 L + + + +VGG VRD+ + ++ D+D+ T+ P++ I Sbjct: 43 PALAALGHAFVRAGHEIALVGGPVRDAFLGVAPHDLDLTTSARPEQTEEILKAWGETTWD 102 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 ++GTI ++TT R++ G R +V + D RRDFT+NA+ Sbjct: 103 VGRAFGTIGARKGSTIVEVTTYRTEDYEVGSRKPQVTYGDTLTGDLTRRDFTVNAMALRL 162 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +++D GGL+DL + ++ A +D LRI+R RF A G +++ D + A Sbjct: 163 PDLELVDPCGGLSDLASGVLRTPVSAEQSFDDDPLRIMRAARFSAQLG-FDVEMDVMAAM 221 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 + L+I+S+ER+ +E+ +LL + P + + + G+ + ++ + Sbjct: 222 EEMAPRLEIVSAERVRAELERLLIGRWPRRGLELLVHTGVADVVLPELSALRETVDEHRR 281 Query: 242 -------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM---------- 281 +L L Q ++ E + D +LR ++ K + Sbjct: 282 HKDVYEHTLTVLDQAVDLETGPDGPVPGPDLVLRLAAILHDIGKPATRRFLPDGTVTFHG 341 Query: 282 ------------AKKFSLPREIRYFLISFFNCNFNQKTLSI----------------PEI 313 + ++ + + + P + Sbjct: 342 HDHVGARMTAKRLRALRFDKQTIKDVSRLVELHLRFHGYADAAWSDSAVRRYATDAGPLL 401 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 ++L L V + L ++ L+ ++ + L G + + Sbjct: 402 ERLHRLTRADVTTRNRRKAAMLDRAYDDLEERIESLRAAEELAAIRPDLD--GGQIMAEL 459 Query: 374 GIPPGKKVGNILVHCKQEWINSS 396 G+PPG VG + Sbjct: 460 GVPPGPIVGEAYRFLMDLRMERG 482 >gi|153819896|ref|ZP_01972563.1| polyA polymerase [Vibrio cholerae NCTC 8457] gi|126509566|gb|EAZ72160.1| polyA polymerase [Vibrio cholerae NCTC 8457] Length = 457 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAAHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--KTEQMLDLVLDA 291 >gi|169632007|ref|YP_001705656.1| Poly(A) polymerase PcnA [Mycobacterium abscessus ATCC 19977] gi|169243974|emb|CAM65002.1| Poly(A) polymerase PcnA [Mycobacterium abscessus] Length = 478 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 93/463 (20%), Positives = 174/463 (37%), Gaps = 62/463 (13%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H L + +L + +VGG+VRD+ + D+D T P++V + + + Sbjct: 21 HKKLLSELGALFDSAGFDLYLVGGSVRDAALGKPGIDLDFTTDARPEQVQNLVTGWAEAI 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY- 128 T I++GTI + R + +ITT RSD R +VVF + D +RRDFT+NA+ Sbjct: 81 WDTGIAFGTIGVARRGQRVEITTFRSDSYDQQSRNPEVVFGDSLEGDLVRRDFTVNAMAV 140 Query: 129 ---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 D G+ D + GL LR + +D LR+LR RF + G + Sbjct: 141 KIGPDGPGEFCDPLNGLEALRAGVLDTPSAPEISFGDDPLRMLRAARFVSQLG-FTVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD- 244 L A L +++ER+ +E++KL+ +P+ I + + G+ + +V ++ L Sbjct: 200 VLEALHAMADQLGRITAERVQTELDKLIVGAHPVAGIDLLVDSGLGAVVLPEVGQMQLTI 259 Query: 245 ------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------- 277 L+ + +A + + D +LR+ L+ K + Sbjct: 260 DEHHQHKDVYRHSLTVLEQAVDLEDEGPDLVLRWAALLHDIGKPATRRHEEGGGVSFHHH 319 Query: 278 -------ILSMAKKFSLPREIRYFLISFFNCNFNQK----------------TLSIPEIK 314 + + +++ + + T + P + Sbjct: 320 EVVGAKMVRKRMRALKYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLLP 379 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY- 373 +L L + L N ++ L D+ + L G+ +++ Sbjct: 380 RLHKLVRADCTTRNKRRAARLQANYDGLEERIAELAAKEDLARVRPD---LDGNQIMELL 436 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+P G VG K+ + L ++ LR+ A Sbjct: 437 GVPAGPIVGQAWQFLKELRLERG-PLDHDEAVEALRQWWAGRS 478 >gi|282852983|ref|ZP_06262320.1| tRNA adenylyltransferase [Propionibacterium acnes J139] gi|282582436|gb|EFB87816.1| tRNA adenylyltransferase [Propionibacterium acnes J139] Length = 499 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 80/450 (17%), Positives = 154/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 45 VAELGEAFARAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 104 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ + D +RRDFT+NA+ Sbjct: 105 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAAT 164 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 165 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 223 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 224 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 283 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 284 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 343 Query: 282 ----AKKFSL---PREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K+ P ++ + + + + +++ GD+ + +L Sbjct: 344 AKMARKRLKALIYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 401 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ I PG Sbjct: 402 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMATLDIKPG 461 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 462 PEVGKAYKFLLNLRLDEGPHTLDEAKNALL 491 >gi|330811775|ref|YP_004356237.1| polynucleotide adenylyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|28932734|gb|AAO60158.1| polynucleotide adenylyltransferase [Pseudomonas fluorescens] gi|327379883|gb|AEA71233.1| Putative polynucleotide adenylyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 465 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 20/245 (8%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K +NI+ L ++ +VGG VRD L+N++ +D D+AT+ P+++ F Sbjct: 34 QKAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQIRAEFRNA 93 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRD 112 R + + I ++ ++ T R++ GR + Sbjct: 94 RI----IGRRFKLVHIHFGREIIEVATFRANHPQNDEEEDSNQSSRNESGRILRDNVYGT 149 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDFTINALY D +++DY G++D+RNR I+ IGD R ED +R+LR Sbjct: 150 LEEDAQRRDFTINALYYDPVSERILDYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAV 209 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A + I+ V + L+ + S R++ E+ KL + N + + + +F Sbjct: 210 RFAAKL-DFGIEKHSAVPIRELAPMLREIPSARLFEEVLKLFLSGNAADTFEMLVDLQLF 268 Query: 232 KEIFL 236 +F Sbjct: 269 DPLFP 273 >gi|15843539|ref|NP_338576.1| polyA polymerase [Mycobacterium tuberculosis CDC1551] gi|31795080|ref|NP_857573.1| poly(A) polymerase PCNA (polynucleotide adenylyltransferase) (NTP polymerase) (RNA adenylating enzyme) (poly(A) polymerase) [Mycobacterium bovis AF2122/97] gi|57117168|ref|YP_178026.1| poly(A) polymerase [Mycobacterium tuberculosis H37Rv] gi|121639818|ref|YP_980042.1| Poly(A) polymerase pcnA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663774|ref|YP_001285297.1| polyA polymerase [Mycobacterium tuberculosis H37Ra] gi|148825115|ref|YP_001289869.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis F11] gi|167969443|ref|ZP_02551720.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis H37Ra] gi|215405965|ref|ZP_03418146.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 02_1987] gi|215413836|ref|ZP_03422501.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 94_M4241A] gi|215425170|ref|ZP_03423089.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92] gi|218755697|ref|ZP_03534493.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503] gi|224992313|ref|YP_002647003.1| poly(A) polymerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800957|ref|YP_003033959.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 1435] gi|254366445|ref|ZP_04982489.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis str. Haarlem] gi|254548911|ref|ZP_05139358.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184837|ref|ZP_05762311.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A] gi|260203120|ref|ZP_05770611.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85] gi|289445508|ref|ZP_06435252.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A] gi|289556175|ref|ZP_06445385.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 605] gi|289572559|ref|ZP_06452786.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85] gi|289747751|ref|ZP_06507129.1| polyA polymerase [Mycobacterium tuberculosis 02_1987] gi|289748445|ref|ZP_06507823.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92] gi|289764098|ref|ZP_06523476.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503] gi|294995590|ref|ZP_06801281.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis 210] gi|297636594|ref|ZP_06954374.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 4207] gi|297733589|ref|ZP_06962707.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN R506] gi|298527379|ref|ZP_07014788.1| polyA polymerase [Mycobacterium tuberculosis 94_M4241A] gi|306778272|ref|ZP_07416609.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu001] gi|306778801|ref|ZP_07417138.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu002] gi|306786828|ref|ZP_07425150.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu003] gi|306786957|ref|ZP_07425279.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu004] gi|306791512|ref|ZP_07429814.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu005] gi|306795577|ref|ZP_07433879.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu006] gi|306801552|ref|ZP_07438220.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu008] gi|306805761|ref|ZP_07442429.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu007] gi|306970159|ref|ZP_07482820.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu009] gi|306974390|ref|ZP_07487051.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu010] gi|307082099|ref|ZP_07491269.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu011] gi|307086709|ref|ZP_07495822.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu012] gi|313660920|ref|ZP_07817800.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN V2475] gi|7478690|pir||D70600 probable polynucleotide polymerase - Mycobacterium tuberculosis (strain H37RV) gi|13883916|gb|AAK48390.1| polyA polymerase [Mycobacterium tuberculosis CDC1551] gi|31620678|emb|CAD96123.1| POLY(A) POLYMERASE PCNA (POLYNUCLEOTIDE ADENYLYLTRANSFERASE) (NTP POLYMERASE) (RNA ADENYLATING ENZYME) (POLY(A) POLYMERASE) [Mycobacterium bovis AF2122/97] gi|38490392|emb|CAE55651.1| PROBABLE POLY(A) POLYMERASE PCNA (POLYNUCLEOTIDE ADENYLYLTRANSFERASE) (NTP POLYMERASE) (RNA ADENYLATING ENZYME) (POLY(A) POLYMERASE) [Mycobacterium tuberculosis H37Rv] gi|121495466|emb|CAL73954.1| Poly(A) polymerase pcnA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151957|gb|EBA44002.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis str. Haarlem] gi|148507926|gb|ABQ75735.1| polyA polymerase [Mycobacterium tuberculosis H37Ra] gi|148723642|gb|ABR08267.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis F11] gi|224775429|dbj|BAH28235.1| poly(A) polymerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253322461|gb|ACT27064.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 1435] gi|289418466|gb|EFD15667.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CPHL_A] gi|289440807|gb|EFD23300.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 605] gi|289536990|gb|EFD41568.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis K85] gi|289688279|gb|EFD55767.1| polyA polymerase [Mycobacterium tuberculosis 02_1987] gi|289689032|gb|EFD56461.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T92] gi|289711604|gb|EFD75620.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis GM 1503] gi|298497173|gb|EFI32467.1| polyA polymerase [Mycobacterium tuberculosis 94_M4241A] gi|308213421|gb|EFO72820.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu001] gi|308328138|gb|EFP16989.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu002] gi|308328600|gb|EFP17451.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu003] gi|308336255|gb|EFP25106.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu004] gi|308339861|gb|EFP28712.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu005] gi|308343873|gb|EFP32724.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu006] gi|308347657|gb|EFP36508.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu007] gi|308351575|gb|EFP40426.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu008] gi|308352283|gb|EFP41134.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu009] gi|308356285|gb|EFP45136.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu010] gi|308360171|gb|EFP49022.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu011] gi|308363862|gb|EFP52713.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis SUMu012] gi|323717323|gb|EGB26528.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis CDC1551A] gi|326905740|gb|EGE52673.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis W-148] gi|328460685|gb|AEB06108.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis KZN 4207] Length = 480 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 87/452 (19%), Positives = 167/452 (36%), Gaps = 55/452 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H + L + S+ + +VGG+VRD+L+ D+D T P+RV I V Sbjct: 21 HAALLRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAV 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GT+ + +ITT R+D R+ +V F + D +RRDFT NA+ Sbjct: 81 WDTGIEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAV 140 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 G+ +D +GGL LR + + +D LR+LR RF + G + Sbjct: 141 RVTATGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLG-FAVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISL 243 A + L +S+ER+ +E++KLL ++P I M G+ + ++ +++ Sbjct: 200 VRAAIEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAI 259 Query: 244 DQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------- 277 D+ Q + +A + + D +LR+ L+ K + Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHH 319 Query: 278 -------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIA 327 + + +++ + + + Y+ ++ Sbjct: 320 EVVGAKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLP 379 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIP 376 +L + + + + + L G+ ++ IP Sbjct: 380 RLHKLVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIP 439 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G +VG + K+ + ++E LL Sbjct: 440 AGPQVGEAWRYLKELRLERGPLSTEEATTELL 471 >gi|227553358|ref|ZP_03983407.1| possible tRNA CCA-pyrophosphorylase [Enterococcus faecalis HH22] gi|227177509|gb|EEI58481.1| possible tRNA CCA-pyrophosphorylase [Enterococcus faecalis HH22] Length = 241 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + L+ +S ERI E K+L N + ++ Sbjct: 186 AEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIETECYQY 228 >gi|147673822|ref|YP_001216090.1| polyA polymerase [Vibrio cholerae O395] gi|262169899|ref|ZP_06037589.1| poly(A) polymerase [Vibrio cholerae RC27] gi|146315705|gb|ABQ20244.1| polyA polymerase [Vibrio cholerae O395] gi|227012420|gb|ACP08630.1| polyA polymerase [Vibrio cholerae O395] gi|262021633|gb|EEY40344.1| poly(A) polymerase [Vibrio cholerae RC27] Length = 457 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNMYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--KTEQMLDLVLDA 291 >gi|258655493|ref|YP_003204649.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nakamurella multipartita DSM 44233] gi|258558718|gb|ACV81660.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nakamurella multipartita DSM 44233] Length = 464 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 87/449 (19%), Positives = 168/449 (37%), Gaps = 61/449 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++ + +VGG+VRD+L+ D+D T P++V+R+ + T Sbjct: 11 ADELGTVFAAAGHQLFLVGGSVRDALLGRLEDDLDFTTDARPEQVLRLVKGWAESIWQTG 70 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I +GT+ + +ITT RSDL + R +V F + D LRRDF +NA+ G Sbjct: 71 IEFGTVGLAKAGFRVEITTFRSDLYDGETRNPEVTFGDTLEGDLLRRDFAVNAMAVSVPG 130 Query: 134 -KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 D GL L R + G +D LR+LR RF + G + + A Sbjct: 131 HTFTDPFHGLTQLAERVLDTPGTPEQSFRDDPLRMLRAARFVSQLG-FHPAPRVVAAMTA 189 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + ++ ER+ +E+ KL+ ++P + + + G+ I ++ + L++ + ++ Sbjct: 190 MAGEIDRITPERVGAELVKLIMGEHPREGLRLLTDTGLADRILPELPALRLER-DEHLQH 248 Query: 253 EQVFEWK--------------IDSLLRFIVLISWQDKKSILSM----------------- 281 + V+E D LR L+ K + Sbjct: 249 KDVYEHTLTVLDQAIAQEADGPDLTLRLAALMHDIGKPATRRFEPGAGVSFHHHEVVGAK 308 Query: 282 -----AKKFSLPREIRY--FLISFFNCNFNQKTLSIPE--------------IKKLFYLY 320 + +P+ + +++F + F+ + +L L Sbjct: 309 LARKRLRALRMPKALIDDVAMLTFLHLRFHGYGTGAWTDSAVRRYVTDAGELLPRLHKLV 368 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGK 379 AL + + ++ + D+ + L G+ +++ G+PPG Sbjct: 369 RADCTTRNPGRRAALQRSYDSLEERIAQIAAAEDLARVRPD---LDGNAIMELLGVPPGP 425 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408 VG + K+ + L +E L Sbjct: 426 IVGKAWAYLKELRLERG-PLDRETAEAAL 453 >gi|312963066|ref|ZP_07777551.1| poly(A) polymerase [Pseudomonas fluorescens WH6] gi|311282577|gb|EFQ61173.1| poly(A) polymerase [Pseudomonas fluorescens WH6] Length = 467 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R Sbjct: 42 AVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVRAEFRNARI----IG 97 Query: 75 ISYGTIKIICRKKYFDITTLR--------------SDLITDGRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R S GR + + D+ RR Sbjct: 98 RRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGRILRDNVYGTLEEDAQRR 157 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +++DY G++D+RN I+ IGD R ED +R+LR RF A Sbjct: 158 DFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDPTQRYQEDPVRMLRAVRFAAKLN- 216 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ + L+ + S R++ E+ KL + + + + +F +F Sbjct: 217 FGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFP 273 >gi|171741747|ref|ZP_02917554.1| hypothetical protein BIFDEN_00838 [Bifidobacterium dentium ATCC 27678] gi|171277361|gb|EDT45022.1| hypothetical protein BIFDEN_00838 [Bifidobacterium dentium ATCC 27678] Length = 456 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 84/442 (19%), Positives = 161/442 (36%), Gaps = 70/442 (15%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGT 79 + + + +VGG VRD L++ D+D T+ P++ I + R +GT Sbjct: 1 MFAEEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDMGRKFGT 60 Query: 80 IKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + + R++ ++TT RSD D R +V + + D RRDFT+NA+ Sbjct: 61 LGAMRRREDGIEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPD 120 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GG NDL ++ + +D LR++R RF A G + I+ + A Sbjct: 121 LEFVDPFGGANDLVKGVLRTPVNPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSD 179 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + + I+S+ER+ E+ KLL + P I + + G+ +F ++ + L ++ + Sbjct: 180 MVERIDIVSAERVRDELTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRH 238 Query: 253 EQVFEWK--------------------IDSLLRFIVLISWQDKKSILSM----------- 281 + VFE D LR L+ K Sbjct: 239 KDVFEHTMIVVDRAVALETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEPGGKVSFHHH 298 Query: 282 -----------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVM 325 K + + N + ++ + +++ G + Sbjct: 299 DAVGAKMTRKRLKALRFDHHMIEDVSELVNLHLRFHGYVEEPWTDSAVRRYVKDAGP--L 356 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVKY-G 374 +L + + ++ + L L GD++++ G Sbjct: 357 YERLNRLTRADATTQNRRKAMIFSSAMDEMEQRVRDLKKKEDFDAIRPDLNGDEIMQLLG 416 Query: 375 IPPGKKVGNILVHCKQEWINSS 396 I PG VG H + +++ Sbjct: 417 IEPGPMVGRAYKHMLEYRLDNG 438 >gi|326383888|ref|ZP_08205572.1| tRNA adenylyltransferase [Gordonia neofelifaecis NRRL B-59395] gi|326197347|gb|EGD54537.1| tRNA adenylyltransferase [Gordonia neofelifaecis NRRL B-59395] Length = 484 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 91/455 (20%), Positives = 171/455 (37%), Gaps = 56/455 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + +VGG+VRD+++ D+D+ T P + I V T Sbjct: 28 LTPLADSFAARGHELYLVGGSVRDAVLGRLAGDLDLTTDARPAVIAEILRSWGDAVWDTG 87 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQ-- 131 I +GT+ +ITT RSD+ R V F D +RRDF INA+ Sbjct: 88 IDFGTVSAAKAGATVEITTFRSDIYDQQSRNPVVTFGDTLDGDLIRRDFRINAMAVRLLP 147 Query: 132 --QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + D + G+ DL I +D LR+LR RF + G + D L A Sbjct: 148 GGGQEFCDPLDGMTDLLAGIIDTPAAPESSFNDDPLRMLRGVRFVSQLGFRMSD-RVLEA 206 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--EISLDQLS 247 + ++ +++ERI E++K + ++PL A+ + G+ + I ++ ++++D+ Sbjct: 207 TRSMAGQIERITAERIRVELDKTICGEHPLEAVDLLVETGLAELIIPEIPGMKLTIDEHH 266 Query: 248 Q-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS------------------- 277 Q + +A + D +LR+ L+ K + Sbjct: 267 QHKDVYQHSLTVLQQAIDLETGDPDPVLRWAALLHDIGKPATRRHEDGGGVSFHHHEVVG 326 Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKI 331 + + P+ + + + + Y+ ++ +L Sbjct: 327 AKMVRKRMRALKYPKAVVDDVSQLVFLHLRFHGYGDGMWTDSAVRRYVTDAGPLLDRLHK 386 Query: 332 FLALHYNN----------LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + T+ D + VL + + L G+ +++ G+PPG Sbjct: 387 LVRADCTTRNKRRARRLQETYDDLERRIAVLREAEDLDRVRPDLDGNAIMELLGLPPGPL 446 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 VG + K+ ++S +S+ED LR+ A Sbjct: 447 VGEAWRYLKELRLDSG-PMSREDAEAALREWWAQR 480 >gi|312131994|ref|YP_003999334.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leadbetterella byssophila DSM 17132] gi|311908540|gb|ADQ18981.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leadbetterella byssophila DSM 17132] Length = 479 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 78/452 (17%), Positives = 169/452 (37%), Gaps = 59/452 (13%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTRYKV-IPTSI 75 + S ++ +VGG VRD ++ + +DID + SK + + T Sbjct: 19 VSSAAEDLGIQAYVVGGFVRDLILCRAGKDIDFVCVGSGIELAIATASKLGKHISVNTFK 78 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ--- 132 ++GT + + ++ R + +V + D RRDFTINA+ Sbjct: 79 NFGTAQFVYDGYEYEFVGARRESYRSDSRKPIVEDGTLEEDQNRRDFTINAMALSLNKKD 138 Query: 133 -GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G+++D GL D++ R I+ D +D LR++R RF + +I+++ Sbjct: 139 YGRLLDPFQGLEDIKRRLIRTPLDPETTFSDDPLRMMRAVRFASQLN-FDIETETFEGLK 197 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---------- 241 + I+S ERI E+NK++ + P +Y G+ + IF ++ + Sbjct: 198 AMAPRISIISQERITDELNKIILSPKPSYGFKLLYQVGLLEIIFPELVNLLGVETMDGKG 257 Query: 242 SLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMA------------------ 282 D ++ + D LR+ ++ K + + Sbjct: 258 HKDNFYHTLQVLDNTAVRSNDLWLRWAAILHDIAKPATKRFSPKVGWTFHGHEELGGRWV 317 Query: 283 ----KKFSLPREIRYF-LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 +K+ LP + + + + + L+ + ++ + L Sbjct: 318 KGIFRKYKLPLDEKMRKVTTLVRLHLRPIALAKEGVSDSAVRRLLVEAGEYIEDLMILCR 377 Query: 338 NNLTHQDTCFILQVLSDI-------------IHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383 ++T +D + + L + + +TG+ +++ +G+ P K+VG Sbjct: 378 ADITSKDANRVRRYLKNFDKVEELLKEIEEKDKLRNFQPVITGEMIMEVFGLGPSKEVGQ 437 Query: 384 ILVHCKQEWINSSFQLSQED----LHHLLRKL 411 I ++ ++ + + E L + +K+ Sbjct: 438 IKTEVREAILDCRIENNMESAYPYLLEVGKKM 469 >gi|307546716|ref|YP_003899195.1| poly(A) polymerase [Halomonas elongata DSM 2581] gi|307218740|emb|CBV44010.1| poly(A) polymerase [Halomonas elongata DSM 2581] Length = 488 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 79/399 (19%), Positives = 143/399 (35%), Gaps = 46/399 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V + F D+ + +L L+ ++ +VGG +RD+L+ +D D+AT PD V +F Sbjct: 63 VSRQHFSDA-ALKVLYRLHNAGFEAFLVGGCIRDALLGRMPKDFDVATDATPDEVRDLFR 121 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR-----------SDLITDGRYAKVVFTRDW 113 +R + + + ++ ++TT R + DG + + Sbjct: 122 NSRI----IGRRFRIVHVRFGREVIEVTTFRGKPNDDHGDHIAQQSDDGMLLRDNVWGNI 177 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+LRRDFTINALY + + D+ G D+ RT++ IGD R ED +R+LR R Sbjct: 178 EEDALRRDFTINALYYNIADFSIHDFADGARDIDARTLRLIGDPATRYREDPVRMLRAIR 237 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A + ++ + L + R++ E+ KL A + + + G+F Sbjct: 238 FAAKL-DFSLARATEEPIEELAPLLLQVPPARLFDEVLKLFMAGHGVETFQLLREYGLFA 296 Query: 233 EIFLDVQEISLDQLSQVIEAEQVF---------EWKIDSLLRFIVLI------------- 270 +F + E + EQ E + F L+ Sbjct: 297 MLFPEADEAFDELPWAEGLIEQALASTDKRVQEERPVTPAFLFAALLWGPVQLRQRAHQQ 356 Query: 271 SWQDKKSILSMAKKFSLPREI------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV 324 L A + + R++ + F + + Q+ L K++F Sbjct: 357 DGMPPIPALQAASQQVVSRQLQHVSIPKRFSLPMRDIWDLQQRLPSRRGKRVFQTRDHPR 416 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 A L ++ Sbjct: 417 FRAAYDFLLLREAAGEIEPGLGDWWTAFQQADEHEQRRL 455 >gi|297243119|ref|ZP_06927057.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella vaginalis AMD] gi|296889330|gb|EFH28064.1| tRNA nucleotidyltransferase/poly(A) polymerase [Gardnerella vaginalis AMD] Length = 475 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 84/448 (18%), Positives = 158/448 (35%), Gaps = 66/448 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVI 71 + I + L + + +VGG VRD L++ D+D T+ P+ I + + Sbjct: 9 PEAIELGRLFAERHYELALVGGPVRDMLLHRVSHDLDFCTSARPEEFEPILRRWGHDGFW 68 Query: 72 PTSISYGTIKIICRK-----KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTIN 125 +GT+ + R+ +ITT RSD+ D R +V + + D RRDFT+N Sbjct: 69 DMGRKFGTLGAMRRRADGTEVKVEITTYRSDVYDPDSRKPEVQYGDTLEGDLSRRDFTVN 128 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + +D GG +DL ++ D +D LR++R RF A G +I++ Sbjct: 129 AMALRVPDLEFVDPFGGASDLAKGVLRTPVDPRQSFDDDPLRMMRAIRFVAQLG-FSIEA 187 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + L I+S+ERI EI K+L + P + + GI + + ++ + L Sbjct: 188 NTAEAIVDMADRLDIVSAERIRDEITKMLLSDRPRKGLEALVESGIAQRVLPEIPALQL- 246 Query: 245 QLSQVIEAEQVFEW--------------------KIDSLLRFIVLISWQDKKSILSM--- 281 ++ + + VFE D LR L+ K Sbjct: 247 EIDEHHRHKDVFEHTMMVLERAIALETDQEGPVPSPDLTLRLAALLHDIGKPKTRKFEDG 306 Query: 282 -------------------AKKFSLPREIRYFLISFFNCNFNQKTLSIP---EIKKLFYL 319 K + + N + + Y+ Sbjct: 307 GKVSFHHHDVVGAKMTRKRLKALHFDHHLIDDVTELVNLHLRFHGYVDEPWTDSAVRRYV 366 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDD 369 + +L + + + ++ K L + G++ Sbjct: 367 KDSGHLYERLNRLTRADATTQNRRKSLMFEHAMDEMEERVKELKKQEDFNAIRPDVDGNE 426 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSS 396 +++ + PG VG H +++ Sbjct: 427 IMQLLHLQPGPIVGEAYKHMLDYRLDNG 454 >gi|238786773|ref|ZP_04630574.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641] gi|238725141|gb|EEQ16780.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641] Length = 521 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 149/393 (37%), Gaps = 45/393 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 91 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 149 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 150 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 205 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 206 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 265 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I ++ + L + R++ E KLL++ + + Sbjct: 266 RAVRFAAKL-DMSISAETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 324 Query: 229 GIFKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277 +F+ +F + E L Q+ + + + +++ F ++ + + Sbjct: 325 QLFQPLFPLIARNFTEHHDSPMERILVQVLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEH 384 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVM 325 + ++ L + L + ++L+IP+ +L G + Sbjct: 385 AQKLTQESGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQGKRAH 444 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ L + L + W Sbjct: 445 KLMEHPKFRAAYDLLALRAEVENNHELQRLAQW 477 >gi|117620345|ref|YP_858006.1| poly(A) polymerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561752|gb|ABK38700.1| poly(A) polymerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 499 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 18/243 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNKG ++ +VGG VRD L+ + +D DIAT P+++ +FS R Sbjct: 63 SENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKSLFSNCRL--- 119 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R +G + D+ R Sbjct: 120 -IGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIVEDAER 178 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + D+ GGL DL R ++ IGD R ED +R+LR RF A Sbjct: 179 RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRAVRFAAKL- 237 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + L+ + + R++ E KL A + L + G+F+++F V Sbjct: 238 DMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQQLFPQV 297 Query: 239 QEI 241 + Sbjct: 298 AAL 300 >gi|153825676|ref|ZP_01978343.1| polyA polymerase [Vibrio cholerae MZO-2] gi|149740613|gb|EDM54722.1| polyA polymerase [Vibrio cholerae MZO-2] Length = 457 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 20/264 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R G + D+ R Sbjct: 92 -IGRRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER 150 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF Sbjct: 151 RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL- 209 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ D + L+ + + R++ E K+L+A + L M +F+++F + Sbjct: 210 DFDIEEDTAAPIEQLALLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTI 269 Query: 239 QEISLDQLSQVIEAEQVFEWKIDS 262 E S + EQ+ + +D+ Sbjct: 270 AEHFTADHSS--KTEQMLDLVLDA 291 >gi|269838464|ref|YP_003320692.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sphaerobacter thermophilus DSM 20745] gi|269787727|gb|ACZ39870.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sphaerobacter thermophilus DSM 20745] Length = 478 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 96/431 (22%), Positives = 166/431 (38%), Gaps = 45/431 (10%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVIPTSI 75 + + + +VGG+VRD L+ V D+D AT+ P+ + V Sbjct: 33 RLGDAFAQHGAELYLVGGSVRDLLLGQPVTDLDFATSAEPELTKAAGAAAGADSVYTVGE 92 Query: 76 SYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQG 133 +GT+ + +ITT R + T R KV D D RRDFTINA+ D + G Sbjct: 93 QFGTVGFVFDGVSVEITTYREEHYPTPDRRPKVRLGTDLVGDLSRRDFTINAIAVDARDG 152 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 V D GGL+DL R I+ +GD R ED LRILR RF A + +D L A Sbjct: 153 TVHDPFGGLDDLERRIIRAVGDPKARFAEDPLRILRAARFAAQL-DFRVDRRTLAAMRAM 211 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ----- 248 L+ +S ERI +E+N+LL A + ++ + + + +V ++ D + Sbjct: 212 GPQLERISRERIAAELNRLLIAPAAARGLALLHETDLLRWVLPEVVPMAEDTGAGRHKDI 271 Query: 249 VIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSM----------------------AKKF 285 + +V E L +R+ L+ K S+ ++ Sbjct: 272 WLHTLRVVEQSPPRLAVRWAALLHDAAKPMTRSVDARGEVHFFGHERVGADLARKALRRL 331 Query: 286 SLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 R + + + + + L + L + A + H Sbjct: 332 KQERALIDRVAGLVEMHLRPASYDSTWTDSAVRRLMLEAGDLWDDLLDLAAADVTSARAH 391 Query: 343 QDTCFILQVLSDIIHWKKPL---------FPLTGDDVVKY-GIPPGKKVGNILVHCKQEW 392 + ++ + H ++ PL G +++ G PPG+ +G + H ++ Sbjct: 392 RQREAARRIAALREHARRLEEEHALAQLQSPLDGHELMAMFGRPPGRWIGEVKDHLRELV 451 Query: 393 INSSFQLSQED 403 I+ ++ Sbjct: 452 IDGVLAPDDKE 462 >gi|318607077|emb|CBY28575.1| poly(A) polymerase [Yersinia enterocolitica subsp. palearctica Y11] gi|330859189|emb|CBX69540.1| poly(A) polymerase [Yersinia enterocolitica W22703] Length = 478 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 49 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 107 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 108 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNI 163 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+L Sbjct: 164 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRML 223 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L + R++ E KLL++ + + Sbjct: 224 RAVRFAAKL-DMTISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 282 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + + +E Sbjct: 283 QLFQPLFPLIARNFTEHHDSAMER 306 >gi|212637095|ref|YP_002313620.1| polyA polymerase [Shewanella piezotolerans WP3] gi|212558579|gb|ACJ31033.1| PolyA polymerase [Shewanella piezotolerans WP3] Length = 433 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 16/236 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I +L L+K K+ +VGG VRD L+ + +D D+ T P+ + R+F R Sbjct: 14 SENAIKVLYRLHKSGFKAYLVGGGVRDILLGMQPKDFDVVTNATPEEIKRLFRNCRL--- 70 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI----------TDGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ TLR + GR + D+ RRD Sbjct: 71 -VGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNESGRLLRDNVYGSIDEDAERRD 129 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NALY D + Y GGL DL +RTI+ IGD R ED +R+LR RF + Sbjct: 130 FTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKL-DM 188 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 +I+S + LK + + R++ E+ KL A M + G+F +F Sbjct: 189 SIESAAADPIQELAPLLKDIPAARMYEEVLKLFFAGKAAQNYNMMRDFGLFAPLFP 244 >gi|88858370|ref|ZP_01133012.1| poly(A) polymerase I [Pseudoalteromonas tunicata D2] gi|88819987|gb|EAR29800.1| poly(A) polymerase I [Pseudoalteromonas tunicata D2] Length = 457 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 83/415 (20%), Positives = 156/415 (37%), Gaps = 54/415 (13%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V K F + I +L L G + +VGG +RD L+ ++ +D D+ T P++V R+F Sbjct: 24 VSRKDFS-PNAIKVLYRLKDGGYDAYLVGGCIRDVLLGVTPKDFDVVTNATPEQVKRLFR 82 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD------------LITDGRYAKVVFTRD 112 R + I+ ++ ++ T+R T+G+ + Sbjct: 83 NCRI----IGRRFRLAHIVFGREIIEVATMRGHHEGSEDKNPISQSSTEGQLLRDNVFGS 138 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D+ RRDF+INALY + DY G++ +++R I+ IG R ED +R+LR Sbjct: 139 IDEDAERRDFSINALYYSINDYSIHDYANGMDAIKHRRIELIGHPETRYREDPVRMLRAI 198 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF + I D + L + + R++ E+ KL V + G+F Sbjct: 199 RFATKL-DMTIAPDTEKPIYELADLLSNIPAARLFEEVLKLFLNGKAEQNFVALRQYGLF 257 Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR------------FIVLISWQDKKSIL 279 K++F + ++ ++Q E + + + I++ R F L+ + + Sbjct: 258 KQLFPAL-DLIIEQSKTGEELKLITQMFINTDTRINADKKVTPAFVFAALLWYPMVQRAE 316 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 + K+ L Y N + +++P+ + G + + +I L L Sbjct: 317 QLIKETKLDEYEAYTQAGNEVVAQNAQHIAVPK----HFTQGSREI---WQIQLRLPKRG 369 Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 + +++ I PG L W Sbjct: 370 GQRAYRLAQQPRFRAAYDF----------LLLRTQITPGP-----LQELANWWTE 409 >gi|318058987|ref|ZP_07977710.1| RNA nucleotidyltransferase [Streptomyces sp. SA3_actG] gi|318078637|ref|ZP_07985969.1| RNA nucleotidyltransferase [Streptomyces sp. SA3_actF] gi|333025736|ref|ZP_08453800.1| putative RNA nucleotidyltransferase [Streptomyces sp. Tu6071] gi|332745588|gb|EGJ76029.1| putative RNA nucleotidyltransferase [Streptomyces sp. Tu6071] Length = 475 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 88/466 (18%), Positives = 171/466 (36%), Gaps = 71/466 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ D+D T P+ V+ + V Sbjct: 16 ADELARRFEEAGFTLALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVWEVG 75 Query: 75 ISYGTIK----IICRKKY----FDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 I++GT+ ++ ++TT RS+ R +V + + D +RRDFT+N Sbjct: 76 IAFGTVGCQKAARVGEEEQSFQIEVTTYRSEAYDRSSRKPQVSYGDSIEEDLVRRDFTVN 135 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + +D GGL+DL + ++ G +D LR+LR RF A + + Sbjct: 136 AMAVFLPEKRFVDPHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAP 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + + A + + I+S+ER+ E+NKLL + +P+ + + + G+ + ++ + L+ Sbjct: 195 EVVAAMTAMAERIDIVSAERVQGELNKLLLSAHPVKGLRLLVDTGLADRVLPELPALRLE 254 Query: 245 -------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------ 279 L+ + +A + E D LR L+ K Sbjct: 255 SDEHHRHKDVYEHSLTVLEQAIDLEEDGPDLTLRIAALLHDIGKPKTRRFEGDGRVSFHH 314 Query: 280 ------SMAKK----FSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKV 324 +AKK E+ + + + +++ G + Sbjct: 315 HEIVGAKLAKKRLAALKYSNELIRDVSRLIELHLRFHGYGTGEWTDSAVRRYVRDAGPLL 374 Query: 325 MI-------------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + LA Y+ L + Q D I L G++++ Sbjct: 375 TRLHKLTRSDCTTRNKRKANALARAYDGLERRIEELQEQEELDAIR-----PDLDGNEIM 429 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + PG +G + L +E L++ A+ Q Sbjct: 430 ALLDVSPGPVIGKAYAFLLDLRMEKG-PLGKEAAGAALKEWWAAQQ 474 >gi|28868183|ref|NP_790802.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000] gi|301384667|ref|ZP_07233085.1| poly(A) polymerase [Pseudomonas syringae pv. tomato Max13] gi|302061944|ref|ZP_07253485.1| poly(A) polymerase [Pseudomonas syringae pv. tomato K40] gi|302134196|ref|ZP_07260186.1| poly(A) polymerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851420|gb|AAO54497.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000] gi|330872464|gb|EGH06613.1| poly(A) polymerase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967200|gb|EGH67460.1| poly(A) polymerase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 467 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 274 >gi|307826250|ref|ZP_07656459.1| poly(A) polymerase [Methylobacter tundripaludum SV96] gi|307732712|gb|EFO03580.1| poly(A) polymerase [Methylobacter tundripaludum SV96] Length = 467 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 25/289 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L L K + +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 50 SEHALKVLYRLQKEGFDAYLVGGCVRDLLLGREPKDFDVVTNADPDQVRKVFRNCRL--- 106 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT---------DGRYAKVVFTRDWKADSLRRDF 122 + + ++ ++ T R +GR + + D RRDF Sbjct: 107 -IGRRFRLAHVHFGREIIEVATFRGAGEEQNDKQVLNKEGRLLRDNVYGTIEEDVWRRDF 165 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NALY + V+DYVGG+ D + T+K IGD R ED +R+LR RF G K Sbjct: 166 TVNALYYNIKDFSVVDYVGGMADHKTGTLKLIGDPEMRFREDPVRMLRAVRFAVKLGFK- 224 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD---- 237 +DS A + L + S R++ E KL + L + + G+F+ +F Sbjct: 225 LDSACEKAIHNDVQLLASIPSARLYDEALKLFLSGYALQTFEMLRHYGLFQVLFPSTENS 284 Query: 238 --VQEISLDQLSQVIEAE----QVFEWKIDSLLRFIVLISWQDKKSILS 280 V++ +L + E ++ E K + + W+ + + Sbjct: 285 LAVEDSGFPRLLLIKALENSDKRIAEGKTVTAYFLLAAFLWEPVRMLAK 333 >gi|104783677|ref|YP_610175.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48] gi|95112664|emb|CAK17392.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48] Length = 464 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 19/239 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I+ L ++ +VGG VRD L+ ++ +D D+AT+ P++V F R Sbjct: 39 SRHAVGIVERLQAAGYQAYLVGGCVRDLLLGITPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ + GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAPHSDEDQADSHRSSHNASGRILRDNVYGTLEEDAQ 154 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 155 RRDFTINALYYDPVSERILDYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ + K L+ + R++ E KL + + +F+ +F Sbjct: 215 -DFGIEKHTVAPIRKLAPMLRDIPPARLFEESLKLFLNGQGAMTFEMLVDLELFEPLFP 272 >gi|331019095|gb|EGH99151.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 467 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 274 >gi|291616321|ref|YP_003519063.1| PcnB [Pantoea ananatis LMG 20103] gi|291151351|gb|ADD75935.1| PcnB [Pantoea ananatis LMG 20103] Length = 479 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 78/415 (18%), Positives = 150/415 (36%), Gaps = 55/415 (13%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F Sbjct: 46 TISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLF 104 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVF 109 R + ++ + ++ T R G + Sbjct: 105 RNCRL----VGRRFRLAHVMFGPEVIEVATFRGHHQIEETSDDHNNSQRAQSGMLLRDNI 160 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRD TIN+LY V DYVGGLNDL+ I+ IGD R ED +R+L Sbjct: 161 FGSIEDDAQRRDLTINSLYYSVADFSVRDYVGGLNDLQQGIIRLIGDPETRYREDPVRML 220 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L+ + + R++ E KLL+A + + + Sbjct: 221 RVARFAAKLNMR-IAPETAEPIPRLASLLRDVPAARLFEESLKLLQAGYGYSTWLKLCEY 279 Query: 229 GIFKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277 +F+ +F + E L Q+ + + + +++ F + + ++ Sbjct: 280 QLFQPLFPTLARNFTENGDSHMERMLAQVLKNTDNRIQNDMRVNPAFLFAAMFWYPQLEA 339 Query: 278 ILSMA-----------------------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 +A + ++P+ I + + Sbjct: 340 AERIAQESGLTYYDAFALAMNDTLDEACRALAIPKRITSLIRDIWQLQLRMSRRHGKRAW 399 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 KL + L + + N + + + + +K + GDD Sbjct: 400 KLMEHPKFRAAYDLLSLRAEVENNPELLRLSKWWGEFQVAAPPQQKTMLNTLGDD 454 >gi|119468903|ref|ZP_01611928.1| poly(A) polymerase I [Alteromonadales bacterium TW-7] gi|119447555|gb|EAW28822.1| poly(A) polymerase I [Alteromonadales bacterium TW-7] Length = 475 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 81/414 (19%), Positives = 151/414 (36%), Gaps = 60/414 (14%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K F + I +L L G + +VGG +RD L+ +D D+ T PD+V ++F Sbjct: 52 ISRKQFS-PNAIKVLYRLKDGGFDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFR 110 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD------------LITDGRYAKVVFTRD 112 R + I+ ++ ++ T+R T+G+ + Sbjct: 111 NCRL----IGRRFRLAHIVFGREIIEVATMRGHHEAPESKNQISQSSTEGQLLRDNVFGS 166 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR Sbjct: 167 IEEDAERRDFSINALYYSINDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAV 226 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF + +I + + L + R++ E+ KL + + G+F Sbjct: 227 RFATKL-DMSIAPNSEKPISELASLLDNIPPARLFEEVLKLFLNGKAEANFLMLRQYGLF 285 Query: 232 KEIFL-----------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 + +F +++ + Q+ Q + + K+ F L+ + +L+ Sbjct: 286 RALFPALDKILEANPNGLEQAFVQQMFQNTDKRINADKKVTPAFIFAALLWFP----LLA 341 Query: 281 MAKKFSLPREI------------------------RYFLISFFNCNFNQKTLSIPEIKKL 316 + KK ++ + F + + Q L ++ Sbjct: 342 ITKKLQAEEQLSEYDAFAQAMNKVLSESAQHIAVPKRFTLGARDIWHIQHRLDKRAGQRA 401 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDT--CFILQVLSDIIHWKKPLFPLTGD 368 + L A L T + Q LS I+ +K + G Sbjct: 402 YRLTQQPRFKAAYDFLLLRVDAGETEHKELAQWWTQYLSQDINGQKDMVKNLGH 455 >gi|149924374|ref|ZP_01912741.1| Polynucleotide adenylyltransferase region [Plesiocystis pacifica SIR-1] gi|149814762|gb|EDM74334.1| Polynucleotide adenylyltransferase region [Plesiocystis pacifica SIR-1] Length = 408 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 103/413 (24%), Positives = 170/413 (41%), Gaps = 25/413 (6%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S ++ +L L++ +VGGAVRD+L+ D D+A+ P+ V+ +F KT IP Sbjct: 8 SAILAVLRTLDEAGFHGVVVGGAVRDALLGRDGGDWDVASNATPEEVIELFPKT----IP 63 Query: 73 TSISYGTIKIICRKKY----FDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINA 126 T + +GT+ ++ + ++TT R + DGR +V F RD D RRD TINA Sbjct: 64 TGLEHGTVTVLSGRGEDRHAVELTTFRGEGAYHDGRRPSEVRFLRDLTEDLARRDLTINA 123 Query: 127 LYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 L D V+ D GGL D+R I+ +G+ R ED LR +R RF A G + + Sbjct: 124 LAWDPVNAVLTDAFGGLEDMRAGLIRAVGEPERRFNEDGLRTMRAVRFAATMG-FALAPE 182 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A A + +S ER+ E+ KLL A P + M G++ + L LD Sbjct: 183 TEAAIAGALEVFAKVSRERVRVELVKLLRAPKPSLGLEPMVRTGLWAHVLLP-----LDD 237 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISW-----QDKKSILSMAKKFSLPREIRYFLISFFN 300 Q V +LR L++ + I + + RE R +++ + Sbjct: 238 ADQAAAIAAVDRLPPRPMLRLTRLLAPARHGADGRARIEATVEALKPSREERARVLALTH 297 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + ++ + + + + A L + L K Sbjct: 298 PRVDALAEALAAEDAVA-ARRCVAALTRTYLEDAADLLELDAAARDRLGAALEGAALTGK 356 Query: 361 PLFPLTGDDVVKYGI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + G D+++ G+ PG +G +L + + +E L R L Sbjct: 357 -ELAIQGRDLIQAGVAKPGPALGKLLAALLDWVLEDPARNHREALLDQARSLA 408 >gi|237729447|ref|ZP_04559928.1| poly(A) polymerase I [Citrobacter sp. 30_2] gi|226909176|gb|EEH95094.1| poly(A) polymerase I [Citrobacter sp. 30_2] Length = 472 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 148/374 (39%), Gaps = 34/374 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 52 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR 167 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL I+ IG+ R ED +R+LR RF A Sbjct: 168 RDFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRMLRAVRFAAKL- 226 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 227 DMRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREYSLFQPLFPTI 286 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV + +++ F + + ++ +A++ L Sbjct: 287 TRYFTEDGDSPMERIIAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPLLEAAQKIAQESGL 346 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + L + ++L+IP+ + + + ++ + K L + + Sbjct: 347 AYYDAFALAMNDVLDEACRSLAIPKRLTSLTRDIWQLQLRMSRRQGKRAWKLMEHP-KFR 405 Query: 344 DTCFILQVLSDIIH 357 +L + +++ H Sbjct: 406 AAYDLLALRAEVEH 419 >gi|314922775|gb|EFS86606.1| tRNA adenylyltransferase [Propionibacterium acnes HL001PA1] gi|314982981|gb|EFT27073.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA3] gi|315091487|gb|EFT63463.1| tRNA adenylyltransferase [Propionibacterium acnes HL110PA4] gi|315105242|gb|EFT77218.1| tRNA adenylyltransferase [Propionibacterium acnes HL050PA2] Length = 507 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 80/450 (17%), Positives = 154/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFARAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ + D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGGKVSFHHHDIVG 351 Query: 282 ----AKKFSL---PREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K+ P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALIYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ I PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMATLDIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTLDEAKNALL 499 >gi|296133143|ref|YP_003640390.1| Polynucleotide adenylyltransferase region [Thermincola sp. JR] gi|296031721|gb|ADG82489.1| Polynucleotide adenylyltransferase region [Thermincola potens JR] Length = 876 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 91/414 (21%), Positives = 167/414 (40%), Gaps = 25/414 (6%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I L ++ IVGG VRD L+ + D D+ + ++ + + Sbjct: 468 ISYLADQKGYSVFIVGGFVRDLLLGVENLDFDLVVEGDGIAFAKELAEFLCGRVRVHDKF 527 Query: 78 GTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQ 132 GT +I ++ D+ T R++ V K D RRDFTINA+ Sbjct: 528 GTAIVILSDEFKIDVATARTEYYEYPAALPKVEISSLKQDLYRRDFTINAMAIALSQKNF 587 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS-- 190 G++ID+ GG DL + ++ + + +ED RILR RF YG I+ L + Sbjct: 588 GELIDFFGGKRDLEEKVVRVLYN--LSFVEDPTRILRAVRFEQRYG-FTIEPQTLALAKG 644 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL------DVQEISLD 244 + L LS++R+ E+ +LE +PL AI+ M GI++ + ++ + Sbjct: 645 AIKAQILNKLSADRVREELKHILEETSPLGAIIRMKELGIWQFVLPQAMVDEEIISLIER 704 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 + +++ I L + L+ + +I + L +E + L + C Sbjct: 705 APKETTHIKELGFLDIKVWLIHLALLVHKSGATIEEIDTHLRLNKEEQLILKNILACWEV 764 Query: 305 QKTLSIPEIKKL--FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 L K+ Y ++ M A+ +FL L D + ++ + K+ Sbjct: 765 IVRLCAVPGAKVSEIARYLNE-MPAEGYVFLLLKLG-----DQRSVNNLVKCLKRMKRNK 818 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +TGDD+ + G PG L + ++ + +E+L + + I + Sbjct: 819 LLITGDDIKRLGHQPGPLFKEALQAAWEAKLDGLLKSREEEL-GFVDRYIKERE 871 >gi|315127518|ref|YP_004069521.1| poly(A) polymerase I [Pseudoalteromonas sp. SM9913] gi|315016032|gb|ADT69370.1| poly(A) polymerase I [Pseudoalteromonas sp. SM9913] Length = 433 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 79/413 (19%), Positives = 150/413 (36%), Gaps = 45/413 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K F + I +L L G + +VGG +RD L+ +D D+ T P++V ++F Sbjct: 10 ISRKQFS-PNAIKVLYRLKDGGYDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFR 68 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD------------LITDGRYAKVVFTRD 112 R + I+ ++ ++ T+R G+ + Sbjct: 69 NCRL----IGRRFRLAHIVFGREIIEVATMRGHHEAQEDKNQISQSSEHGQLLRDNVFGS 124 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR Sbjct: 125 IEEDAERRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAV 184 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF + I L + R++ EI KL + + G+F Sbjct: 185 RFATKL-DMQIAPASEKPITALASLLDNIPPARLFEEILKLFLNGKAQQNFLMLRKYGLF 243 Query: 232 KEIFLD-----------VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 K +F + ++E + Q+ + E K+ F L+ + + Sbjct: 244 KSLFPELDRILDKNPGGLEETFIKQMFANTDIRINAEKKVTPAFVFAALLWFPLVERTEK 303 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAK 328 + ++ L + + N + +++P+ ++L G + Sbjct: 304 IRRQEQLSEYDAFAQAINKVLSENAQHIAVPKRFTLGARDIWHIQQRLDKRAGQRAYRLT 363 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL-FPLTG--DDVVKYGIPPG 378 + Y+ L + + W + L + G + V + G G Sbjct: 364 QQPRFKAAYDFLLLRVDAGETEHTELAQWWTQYLSQDINGQKEMVRELGHQGG 416 >gi|330960809|gb|EGH61069.1| poly(A) polymerase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 467 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 274 >gi|261867904|ref|YP_003255826.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413236|gb|ACX82607.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 592 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 81/435 (18%), Positives = 158/435 (36%), Gaps = 56/435 (12%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SK 65 + + ++ L + ++ +VGG +RD L+ +D D+AT P+++ +F + Sbjct: 5 APRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQRQ 64 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWK 114 R + ++ ++ ++ T R+ +G + + Sbjct: 65 CRL----VGRRFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSEEGMLLRDNVYGTLE 120 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 D+ RRDF++NALY + + DY G++DL+N ++ IGD R ED +R+LR RF Sbjct: 121 QDAERRDFSVNALYYNPQDNTLKDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSIRF 180 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A E +D + LK + R++ E KLL+ + + + G+F++ Sbjct: 181 MAKL-EMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQYGLFEQ 239 Query: 234 IFLDVQEISLDQLSQVIEA----------EQVFEWKIDSLLRFIVLISWQDKKSILSMAK 283 +F +Q ++ + E E+V + + W + + M K Sbjct: 240 LFPLLQNYFTEREDSMAEKMILRALTSTDERVADKLPINPAFLFAAFFWYPLRERVEMLK 299 Query: 284 KF-SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 L Y L S + L+IP + + L + Sbjct: 300 NEGGLNNYDAYALASNDLLDVLCNALAIPR------RHTAVIRDIWSLQLQFLKRTPKSV 353 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDV--VKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 Q + + G D+ ++ I G+ V W F Sbjct: 354 QRVMEQSKFRA-------------GFDLLVMRAEIEGGEAV-----ELSAWWHEYQFSND 395 Query: 401 QEDLHHLLRKLIASS 415 L+++L + Sbjct: 396 S-QRQDLVKELPSQP 409 >gi|311693217|gb|ADP96090.1| polyA polymerase [marine bacterium HP15] Length = 443 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +L LNK ++ +VGG VRD L+ +D DIAT P+ V +F +R Sbjct: 30 SEPAKKVLHRLNKSGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRNSRL--- 86 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADS 117 + + ++ ++ ++TT R + G + + + D+ Sbjct: 87 -IGRRFRIVHVVFGREVIEVTTFRGNAAEADTDTDDDDRRTSEHGLLLRDNVYGNQEEDA 145 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 LRRDFT+NALY VID+ G+ DLRNR ++ IGD R ED +R+LR RF A Sbjct: 146 LRRDFTVNALYYCIRDFTVIDFANGIEDLRNRQLRLIGDPETRYREDPVRMLRAIRFAAK 205 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G +I+ + + L + R++ E+ KL A + + + + +F Sbjct: 206 LG-FDIEPETEAPIGELAPLLTHIPPARLFDEVLKLFSAGHGEATYDLLTRYNLLEPLFP 264 Query: 237 DV 238 + Sbjct: 265 ET 266 >gi|153854755|ref|ZP_01995989.1| hypothetical protein DORLON_01987 [Dorea longicatena DSM 13814] gi|149752662|gb|EDM62593.1| hypothetical protein DORLON_01987 [Dorea longicatena DSM 13814] Length = 396 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 159/395 (40%), Gaps = 48/395 (12%) Query: 55 LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRD 112 +P+ +F KT T I +GTI ++ + +++TT R D D R+ +V FTR+ Sbjct: 1 MPEETKALFDKT----FDTGIEHGTITVLLNHEGYEVTTYRIDGKYEDSRHPKEVTFTRN 56 Query: 113 WKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 K D LRRDFTINA+ + + ++D GG+ DL I+ +G+A R ED LRILR R Sbjct: 57 LKEDLLRRDFTINAMAYNDKDGIVDIFGGMQDLEKHMIRCVGNARERFSEDALRILRGVR 116 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A G ID + L+ +S+ERI E+ K+L + P I Y GI K Sbjct: 117 FAAQLG-FEIDEETKEGMKLLAPTLENISAERIQVELVKMLTSDRPEL-IRTAYELGITK 174 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKI--------DSLLRFIVLISWQDKKS------- 277 + + + + V E I D +LR +L+ K Sbjct: 175 VFLPEFDRMMETKQETLHHMYTVGEHTIHAMMNVRNDKILRLTMLLHDTGKPEYKTMDED 234 Query: 278 ---------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + ++ + + + + + +++ G+ Sbjct: 235 GVAHFKMHALGSERIAKEVLRRLKFDNDTLHKVTRLVLNHDYRMPAVPKNVRRAMNKIGE 294 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQV------LSDIIHWKKP----LFPLTGDDVVK 372 + +++ A +Q + + ++II + +TG D+++ Sbjct: 295 DIFPYYMEVRRADVLAQSEYQRAEKLKNLDEVEQTYAEIIEKGQCVSLKELAVTGRDLIR 354 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 G+ PGK++G L I + ++E L Sbjct: 355 AGMKPGKEIGEKLNELLNLVIENPEMNTKEILLKY 389 >gi|221133901|ref|ZP_03560206.1| poly(A) polymerase I [Glaciecola sp. HTCC2999] Length = 443 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 146/380 (38%), Gaps = 39/380 (10%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L LN ++ +VGG VRD L+N +D DIAT P+++ F R Sbjct: 32 NAVKVLRRLNAAGFEAYLVGGCVRDLLLNQHPKDFDIATDATPEQIKAQFKNCRI----I 87 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLRRD 121 + ++ ++ ++ T R I D G+ + + D+ RRD Sbjct: 88 GRRFRLAHVVFGREIIEVATFRGPHIQDKNTSDKSKKDGEGQLVRDNVFGTLEQDAARRD 147 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y + G + D+ GG++ + +TI IGD R ED +R++R RF A + Sbjct: 148 FTINAMYYNVVDGTIRDFAGGIDSIEEKTISLIGDPETRYREDPVRMIRAVRFAAKL-DM 206 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ID A K L+ + R++ E+ KLL + L + G+F ++F Sbjct: 207 TIDEVSDEAIHKFAYLLENIPPARLFEEVLKLLFSGQGLTTYQLLLEYGLFDKLFPQTGP 266 Query: 241 I---------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 + +DQ+ + ++ + ++ + ++ + + L Sbjct: 267 LLKTDSRERKFIDQVITNTDNRINNGQRVTPAFLYAAMLWYPIEEHSQKLVIESGLSPAD 326 Query: 292 RYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLKIFLALHYNN 339 + + + + + IP+ +L YG + Y+ Sbjct: 327 AFNMAMSDVLHRQLQRIMIPKRFSITMREIWSFQHRLSRRYGRRAYQMLAHPRFRAAYDF 386 Query: 340 LTHQDTCFILQVLSDIIHWK 359 L + ++ W Sbjct: 387 LLLRGEIEGGELYELAQWWT 406 >gi|215432889|ref|ZP_03430808.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis EAS054] gi|289756042|ref|ZP_06515420.1| polyA polymerase [Mycobacterium tuberculosis EAS054] gi|289696629|gb|EFD64058.1| polyA polymerase [Mycobacterium tuberculosis EAS054] Length = 480 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 86/448 (19%), Positives = 165/448 (36%), Gaps = 55/448 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + S+ + +VGG+VRD+L+ D+D T P+RV I V T Sbjct: 25 LRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAVWDTG 84 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132 I +GT+ + +ITT R+D R+ +V F + D +RRDFT NA+ Sbjct: 85 IEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTA 144 Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G+ +D +GGL LR + + +D LR+LR RF + G + A Sbjct: 145 TGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLG-FAVAPRVRAA 203 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLS 247 + L +S+ER+ +E++KLL ++P I M G+ + ++ +++D+ Sbjct: 204 IEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAIDEHH 263 Query: 248 Q-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS------------------- 277 Q + +A + + D +LR+ L+ K + Sbjct: 264 QHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVG 323 Query: 278 ---ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKI 331 + + +++ + + + Y+ ++ +L Sbjct: 324 AKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLPRLHK 383 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + + + + L G+ ++ IP G + Sbjct: 384 LVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIPAGPQ 443 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLL 408 VG + K+ + ++E LL Sbjct: 444 VGEAWRYLKELRLERGPLSTEEATTELL 471 >gi|289674926|ref|ZP_06495816.1| poly(A) polymerase [Pseudomonas syringae pv. syringae FF5] Length = 408 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274 >gi|314965692|gb|EFT09791.1| tRNA adenylyltransferase [Propionibacterium acnes HL082PA2] gi|315094587|gb|EFT66563.1| tRNA adenylyltransferase [Propionibacterium acnes HL060PA1] Length = 507 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 80/450 (17%), Positives = 154/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFARAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDDTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ + D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGDKVSFHHHDIVG 351 Query: 282 ----AKKFSL---PREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K+ P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALIYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ I PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMATLDIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTLDEAKNALL 499 >gi|111115537|ref|YP_710155.1| polynucleotide adenylyltransferase [Borrelia afzelii PKo] gi|216263443|ref|ZP_03435438.1| polynucleotide adenylyltransferase [Borrelia afzelii ACA-1] gi|110890811|gb|ABH01979.1| polynucleotide adenylyltransferase [Borrelia afzelii PKo] gi|215980287|gb|EEC21108.1| polynucleotide adenylyltransferase [Borrelia afzelii ACA-1] Length = 410 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 101/394 (25%), Positives = 168/394 (42%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++++F I T I +GTI II Sbjct: 20 NNYELYLVGGALRDLLLNKQPCDFDFATNATPEEIIKLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + + A V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYEKKRAPKQVKYTKNLIKDLKRRDFTINAIAMDIFNFNIIDCYDG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E KLLE N I ++ FK F +L+ +++I+ + Sbjct: 195 KERIKNEFQKLLEGVNIQKGIYYLKKVDFFKNFF------NLEIKTKLIKKTVLLNKDKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + + N ++ ++ + YL Sbjct: 249 YLKAITILTIEKPIKELKENLTSLKFSNKEIKLILFYRSIIDNNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I + FI + + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKKKKYLFITKNIKRKKLLKSPLSLKDLKINGKDIQNIIQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL I + ++ L ++ L Sbjct: 369 DKNIGKILNILLSYVIENPKLNTKNYLIKKIKTL 402 >gi|145221439|ref|YP_001132117.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] gi|145213925|gb|ABP43329.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] Length = 497 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 83/454 (18%), Positives = 172/454 (37%), Gaps = 61/454 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATTILPDRVMRIFSKTRYKVI 71 L ++ + + +VGG VRD+L+ D+D T P+++ R + Sbjct: 36 LRDLGRVFADNGHELYLVGGPVRDALLGRFDPDKNDLDFTTDARPEQMQRFLRGWGDALW 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY-- 128 T I +GT+ + + +ITT R+D R +V F + D +RRDFT+NA+ Sbjct: 96 DTGIEFGTLGVGKGEDRLEITTFRADTYDKVSRNPEVRFGDNLADDLVRRDFTVNAMAVR 155 Query: 129 --ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 AD + +D + GL+ LR+ + +D LR+LR RF + G + Sbjct: 156 VTADGPTEFLDPLDGLSALRDGVLDTPAAPEVSFGDDPLRMLRAARFVSQLG-FTVAPRV 214 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 A + L +++ER+ +E++KLL +P+ + M + G+ + + +V + + + Sbjct: 215 RRALEEMSSQLSRITAERVAAELDKLLLGADPVAGLDLMVDTGLGEVVLPEVGAMRM-AI 273 Query: 247 SQVIEAEQVFEWK---------------IDSLLRFIVLISWQDKKSIL------------ 279 + + + V++ D +LR+ L+ K + Sbjct: 274 DEHHQHKDVYQHSLTVLRQAMDLEGADGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHH 333 Query: 280 ----------SMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMI 326 ++ +++ + + + Y+ ++ Sbjct: 334 HEVVGAKMTRKRMRELKYSKQMISDVSQLVYLHLRFHGYGDGRWTDSAVRRYVTDAGPLL 393 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGI 375 +L + + + D+ + + G++++K GI Sbjct: 394 TRLHKLVRADCTTRNKRRAARLQANYDDLERRIQDLAAREDLARVRPDIDGNEIMKILGI 453 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 PPG +VG H K+ ++ E + L+R Sbjct: 454 PPGPQVGQAWNHLKELRLDRGPLDHDEAVEELVR 487 >gi|161511462|ref|NP_991684.2| poly(A) polymerase I [Yersinia pestis biovar Microtus str. 91001] Length = 491 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 62 ISRRDISD-NPLKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFR 120 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 121 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNI 176 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IGD R ED +R+L Sbjct: 177 FGSIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRML 236 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +I + + L+ + R++ E KLL++ + + Sbjct: 237 RAVRFAAKL-DMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 295 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + +Q +E Sbjct: 296 QLFQPLFPLIARNFTEQHDSPMER 319 >gi|296392447|ref|YP_003657331.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Segniliparus rotundus DSM 44985] gi|296179594|gb|ADG96500.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Segniliparus rotundus DSM 44985] Length = 513 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 95/453 (20%), Positives = 170/453 (37%), Gaps = 55/453 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 HD ++ + +VGG+VRD+L+ D+D T P+ ++ ++ Sbjct: 57 HDGLFGSLAERFADQGHQLYLVGGSVRDALLGRLGDDLDFTTDARPEHTQKLLRGWAEEM 116 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I++GT+ + +ITT R D R V F D + D RRDF +NA+ Sbjct: 117 WDTGIAFGTVGALKNGNKLEITTFRKDDYDQSSRNPAVDFGTDLRTDLTRRDFRMNAMAV 176 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 G+ +D +GGL D+ I +D LR+LR RF A G Sbjct: 177 SLTAQGCGEFVDPLGGLEDVLAGRIDTPDTPEISFGDDPLRMLRAARFAAQLGFTW-SPR 235 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD- 244 A++ + +++ER+ +E+ KL+ ++ + + + + G+ + + +V ++ L Sbjct: 236 VARATVDMAGEITRITAERVGAELQKLIVGEHAVEGVELLVDSGLAEFVLPEVPQLQLAT 295 Query: 245 ------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM----AKKFSLP 288 L+ + A + D +LR+ L+ K + A F Sbjct: 296 DAAHHHKDVYRHSLAVLGNAMALEPGDPDPVLRWAALLHDIGKPATRRFEAGGAVSFHHH 355 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKL------FYLYGDKVMIA------------KLK 330 + L + ++ KL FY YG++ L Sbjct: 356 EVVGAKLARKRLRALAFPKHMVEDVGKLVFLHMRFYGYGEQSWTDSAVRRYVVDAGELLP 415 Query: 331 IFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIP 376 L + T ++ Q+ L++ K L G+ +++ GI Sbjct: 416 KLNLLVRADCTTRNARRSRQLAAAYDRFEERIAKLAEAEDLAKVRPDLDGNAIMEILGIG 475 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 PG+ VG H K+ + QE HLL Sbjct: 476 PGRAVGEAWHHLKELRLEHGPLDPQEAKRHLLD 508 >gi|219684228|ref|ZP_03539172.1| polynucleotide adenylyltransferase [Borrelia garinii PBr] gi|219672217|gb|EED29270.1| polynucleotide adenylyltransferase [Borrelia garinii PBr] Length = 410 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 175/393 (44%), Gaps = 18/393 (4%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 21 NYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFN 76 Query: 86 KKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGL 142 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 77 KKIFEITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGK 136 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL + I+ IG+++ R+ ED LRILR RF + K I+ + L++ K+ + ++S Sbjct: 137 KDLNKKIIRCIGNSNKRLEEDALRILRAARFSSTLNFK-IEKNTLISMKYKKENILMISK 195 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ERI +E +KLLE KN I ++ FK F +L+ +++I+ + + Sbjct: 196 ERIKNEFHKLLEGKNIQKGIYYLKKVDFFKNFF------NLEIKTKLIKKTALLNKEKFY 249 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 L +L + K + + ++ + + N+ +I ++ + YL Sbjct: 250 LKAITILTIEKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNKNIFNIKKLSDIRYLLSK 309 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPG 378 +I + FI++ + K PL + G D+ Sbjct: 310 STREHYKEIIDIYKALKGKKKKYLFIVKNIKRKKLLKNPLSLKDLKINGKDIQNLEEIEN 369 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL I + +++ L ++ L Sbjct: 370 KNIGKILNTLLSHVIENPKLNTKKYLIERIKTL 402 >gi|15828457|ref|NP_302720.1| hypothetical protein ML2697 [Mycobacterium leprae TN] gi|221230934|ref|YP_002504350.1| pcnA [Mycobacterium leprae Br4923] gi|13093887|emb|CAC32229.1| pcnA [Mycobacterium leprae] gi|219934041|emb|CAR72797.1| pcnA [Mycobacterium leprae Br4923] Length = 486 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 85/454 (18%), Positives = 170/454 (37%), Gaps = 58/454 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69 H L ++ S+ + +VGG+VRD+L+ D+D AT P++V +I + Sbjct: 23 HTPVLRDLGSVFAASGHELYLVGGSVRDALLGRLDSPDLDFATDAGPEQVQQIMRRWADN 82 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY 128 + T I +GTI + +ITT R+D R +V F+ D +RRDFT+NA+ Sbjct: 83 LWETGIEFGTIGVGKGDYRLEITTFRADRYDQVSRNPEVRFSDRLDDDLVRRDFTVNAMA 142 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G+ D +GGL LR R ++ +D LR+LR RF + G + Sbjct: 143 VRIASYGPGEFFDPLGGLAALRVRVLETPAAPSVSFGDDPLRMLRAARFVSQLG-FTVAP 201 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 A + L +S+ER+ +E++KLL +P I + G+ + + ++ ++ + Sbjct: 202 QVHAAIEEMASQLARISAERVSTELDKLLLGNDPAAGIDLLVQTGMGEVVLPEIGDMRM- 260 Query: 245 QLSQVIEAEQVFEWK--------------IDSLLRFIVLISWQDKKS------------- 277 + + + + V++ D +LR+ L+ K + Sbjct: 261 AIDEHHQHKDVYQHSLTVLRQAIALEDNGPDLVLRWAALLHDIGKPATRRHELNGGVSFH 320 Query: 278 ---------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVM 325 + + +++ + + + Y+ + Sbjct: 321 HHEVVGAKMVRKRMRALKYAKQLVDDVSQLVYLHLRFHGYGEGKWTDSAVRRYVTDAGPL 380 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YG 374 +++L + + + + + L G+ ++ Sbjct: 381 LSRLHKLVRADCTTRNQRRAARLQDSYDRLEARIAELAAEEDLARVRPDLDGNQIMALLD 440 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 IP G +VG K+ ++ ++E LL Sbjct: 441 IPAGPQVGEAWRFLKELRLDRGPLTNEEATAELL 474 >gi|237802072|ref|ZP_04590533.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024928|gb|EGI04984.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 467 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD ++N++ +D D+AT+ P++V F R Sbjct: 43 AVNIVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R++ D GR + + D+ RR Sbjct: 99 RRFKLVHIHFGREIIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRR 158 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +V+DY G++D+RN+ I+ IGD R ED +R+LR RF A + Sbjct: 159 DFTINALYYDPVSERVLDYANGVHDIRNKLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-D 217 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ L+ + S R++ E+ KL + + + +F +F Sbjct: 218 FGIEKHSAQPISALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFDPLFP 274 >gi|149910512|ref|ZP_01899152.1| polyA polymerase [Moritella sp. PE36] gi|149806472|gb|EDM66444.1| polyA polymerase [Moritella sp. PE36] Length = 488 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 87/418 (20%), Positives = 156/418 (37%), Gaps = 48/418 (11%) Query: 6 QHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 QH H+ + + +L L+K ++ +VGG VRD + +D DIAT P+++ ++ Sbjct: 59 QHPVNHNLISENALKVLYRLHKSGYQAYLVGGGVRDIFIGQEPKDFDIATNAEPEQIKKL 118 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVF 109 F R + I+ + ++ T R + + G + Sbjct: 119 FHNCRL----VGRRFRLAHILFGRDMIEVATFRGHHVEEQEQNQQTSKQSDGGMLLRDNV 174 Query: 110 TRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFT+NALY + + V D+ GGL DL+++ ++ IGD R ED +R+L Sbjct: 175 YGNISEDAERRDFTVNALYYNIADRAVYDFAGGLADLQSKQLRLIGDPETRYREDPVRML 234 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L+ + + R++ E KL + L M Sbjct: 235 RAVRFSAKL-DMQISPEAKAPIKQLANLLQSIPAARLFEETLKLFLNGHGLATYKLMKEH 293 Query: 229 GIFKEIFLDVQ---------------EISLDQLSQVIEAEQ----VFEWKIDSLLRFIVL 269 G+F+ +F V EI+L+ I A + + + L Sbjct: 294 GLFQPLFPLVSKYQNEDGSSNCDKFIEIALENTDSRINAGKRVTPAYLYAAMLWYPLEAL 353 Query: 270 ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 + S L+ + L + + T +I +I L + Sbjct: 354 AEERVIDSGLNYSDALLLAMNDALDSQTKSIAIPRRFTSTIRDIWHLQGRLPRRQGKRAE 413 Query: 330 KIFLALHYN---NLTHQDTCFILQVLSDIIHWKKPLFPLTG----DDVVKYGIPPGKK 380 K F L + + L ++ W + + + + P GKK Sbjct: 414 KAFEHLKFRAGFDFLEMRAEIQGGDLVEVTQWWRDYQTANATGRQNLIKELNAPAGKK 471 >gi|332160459|ref|YP_004297036.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664689|gb|ADZ41333.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 472 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 22/264 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + D + + +L LNK ++ +VGG VRD L+ +D DI T+ P++V ++F Sbjct: 43 ISRRDISD-NALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFR 101 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI---------------TDGRYAKVVF 109 R + ++ + ++ T R +G + Sbjct: 102 NCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEQQQTEDSDKNSSQQAQNGMLLRDNI 157 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTIN+LY + DY GGL DL+ I+ IG R ED +R+L Sbjct: 158 FGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRML 217 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L + R++ E KLL++ + + Sbjct: 218 RAVRFAAKL-DMTISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 276 Query: 229 GIFKEIFLDVQEISLDQLSQVIEA 252 +F+ +F + + +E Sbjct: 277 QLFQPLFPLIARNFTEHHDSAMER 300 >gi|227496625|ref|ZP_03926901.1| tRNA adenylyltransferase [Actinomyces urogenitalis DSM 15434] gi|226833858|gb|EEH66241.1| tRNA adenylyltransferase [Actinomyces urogenitalis DSM 15434] Length = 489 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 83/441 (18%), Positives = 150/441 (34%), Gaps = 58/441 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 L + L + + +VGG VRD+ + + D+D T+ PD I ++ Sbjct: 29 PSLAALGHLFVRAGHELALVGGPVRDAFLGVVPHDLDCTTSARPDETEAILTQWGDACWD 88 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 +GTI ++TT R++ G R V + + D RRDFT+NA+ Sbjct: 89 IGKEFGTIGARKGDVVVEVTTYRTEEYEVGSRKPVVAYGETLEGDLTRRDFTVNAMALRL 148 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +++D GG DL ++ A +D LRI+R RF A G +++ D L A Sbjct: 149 PDLELVDPCGGRADLEAGVLRTPVTAVQSFDDDPLRIMRAARFAAQLG-FDVEMDVLEAM 207 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-------- 242 + L+I+S+ER+ +E+ +LL ++ P + M + G+ + ++ + Sbjct: 208 SEMAGRLEIVSAERVRAELERLLTSRWPRRGLELMVHSGVADVVLPELSALQETVDEKGR 267 Query: 243 -----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------ 279 LDQ + Q D +LR L+ K + Sbjct: 268 HKDVYEHTLTVLDQAIALETGPQGPVPAPDLVLRLAALLHDIGKPATRRFEGGGVVTFHA 327 Query: 280 ------SMAKK----FSLPREIRYFLISFFNCNFNQKTLSIPEIKK---LFYLYGDKVMI 326 MAKK ++ + + + Y+ ++ Sbjct: 328 HDLVGARMAKKRLTALRFDKQTIKDVARLVELHLRFHGYADARWSDSAVRRYVTDAGPLL 387 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVV-KYGI 375 +L + + D+ L G ++ + I Sbjct: 388 ERLHRLTRADVTTGNKRKAQMLSAAYDDLEERIAELAKQEELAAIRPDLDGQQIMAELRI 447 Query: 376 PPGKKVGNILVHCKQEWINSS 396 PG VG + Sbjct: 448 EPGPVVGQAYRFLMDLRMEKG 468 >gi|312898263|ref|ZP_07757654.1| HD domain protein [Megasphaera micronuciformis F0359] gi|310620760|gb|EFQ04329.1| HD domain protein [Megasphaera micronuciformis F0359] Length = 477 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 90/464 (19%), Positives = 170/464 (36%), Gaps = 71/464 (15%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSI 75 ILS LN+ ++ IVGGAVRD LM+ D DI T+ P+ ++ K ++ I Sbjct: 7 TILSGLNRAGYEAYIVGGAVRDKLMHKEPHDYDITTSARPEEIVATARKEGWQCIESVGR 66 Query: 76 SYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 S+G I+ + +++ T R + R K+ + + + D RRDFT+NAL D++G Sbjct: 67 SFGVSLILIGGQTYEVATFRDESYGEDSHRPEKIWYAQTLQEDVKRRDFTVNALAQDKEG 126 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++ DYVGG+ D+ +T++ +GDA R ED LR+ R RF + + + A A Sbjct: 127 RIYDYVGGVKDISKKTLRAVGDASVRFQEDALRLFRLCRFAGKL-DFTVHKETQRAMPTA 185 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIFLDVQ 239 + +K LS+ER+ +EI +LL + + G+ I + Sbjct: 186 FERVKGLSAERVVAEIERLLVTPAAYKGLDILVRSGLGNMTCRRRENGRYTDVPILPECT 245 Query: 240 EISLDQLSQVIEAEQVF--------EWKIDSLLRFIVLISWQDK---------------- 275 + S + D LR+ L K Sbjct: 246 HLQYTPQSYPYHVFDAWVHTLAVIAHTPPDLTLRYAALFHDVAKGLEGVRGTKDGRYTDY 305 Query: 276 -------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDK-- 323 ++ +++ ++ ++ + LS +++ G + Sbjct: 306 GHERVGADMTAAVLRRWQCNEKLINRVVWLVKTHMQYHALSASPEANVRRWLRREGTRGD 365 Query: 324 --------VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 + + + ++ + + P+T D+ Sbjct: 366 FSRNTDLAEAVRQATVLSVADAKGCRPDSDTTGIESFGEYVQLLVQTLPITTKDL---NY 422 Query: 376 PP------GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 PP G G+ L + + + + L+ R+ + Sbjct: 423 PPELPKLCGSYTGDCLRVLLKRVQDGALENDSAVLYEASRRWLK 466 >gi|327328873|gb|EGE70633.1| tRNA adenylyltransferase [Propionibacterium acnes HL103PA1] Length = 507 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 80/450 (17%), Positives = 154/450 (34%), Gaps = 59/450 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + +VGG+VRD+LM D+D T PD I + + Sbjct: 53 VAELGEAFARAGHDLYLVGGSVRDALMGRLGHDLDFTTDARPDGTEAILRQHTHATWDIG 112 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 ++GTI ++TT R+D D R ++V+ + D +RRDFT+NA+ Sbjct: 113 RAFGTIGAQIDDWVVEVTTYRADAYHPDSRKPEIVYGETLEDDLIRRDFTVNAMALHAAT 172 Query: 134 KVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GL D+ + ++ +D LR++R RF + G + ++ A Sbjct: 173 RTFSDPYAGLTDIVSGILRTPFPPERSFSDDPLRMMRAARFTSQLG-FTVTNEVRAAMTD 231 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++I+S+ER+ E++K L +P + + I + ++ + L++ Sbjct: 232 MASRIEIISAERVRDELSKTLLTDHPREGLDLLVTTRIADYVLPELPALRLERDEHHRHK 291 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------------- 281 L Q I+ E+ D R L+ K S Sbjct: 292 DVYEHSLTVLDQSIDLEKRRGHDPDLTGRLAALLHDIGKPSTRKFEPGDKVSFHHHDIVG 351 Query: 282 ----AKKFSL---PREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K+ P ++ + + + + +++ GD+ + +L Sbjct: 352 AKMARKRLKALIYPSQVVKEVSKLVELHLRFHGYGDQGWTDSAVRRYVRDAGDQ--LERL 409 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + D+ L G ++ I PG Sbjct: 410 HILTRSDCTTRNRRKAERLEFAYDDLEARIANLTAKEELAAIRPDLDGQQIMATLDIKPG 469 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +VG ++ E + LL Sbjct: 470 PEVGKAYKFLLNLRLDEGPHTLDEAKNALL 499 >gi|303237316|ref|ZP_07323886.1| HDIG domain protein [Prevotella disiens FB035-09AN] gi|302482703|gb|EFL45728.1| HDIG domain protein [Prevotella disiens FB035-09AN] Length = 474 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 91/461 (19%), Positives = 181/461 (39%), Gaps = 58/461 (12%) Query: 10 FHDSDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 F D D+ I +K + +VGG VRD + DID+ V KT Sbjct: 12 FIDKDIFHKISDAADKLGLECYVVGGYVRDLFLERPSNDIDVVVVGSGISVANELKKTLG 71 Query: 69 KVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 K ++GT ++ R + R + + +V + D RRDFTINA Sbjct: 72 KRAHISVFHNFGTAQVKLRGMEVEFVGARKESYSHDSRKPIVEDGTLEDDQNRRDFTINA 131 Query: 127 LYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + + G+++D GG++DL + I+ D +D LR++R RF I Sbjct: 132 MAVCLNKEHFGELVDPFGGVDDLWDGIIRTPLDPDITFSDDPLRMMRCVRFATQLNFF-I 190 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + + A + + +KI+S ERI E+NK++ K P + +Y G+ + I ++ + Sbjct: 191 EDETFEALERNAERIKIVSGERIADELNKIMATKTPSKGFIDLYRCGLLQIILPELVAMD 250 Query: 243 LDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDK---------------- 275 + + + F ++ L LR+ L K Sbjct: 251 VVETRNGRAHKNNFYHTLEVLDNAARTTDKLWLRWAALFHDIGKPKSKRWDASIGWTFHS 310 Query: 276 ------KSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDK 323 K I ++ K+ P + + ++ + + ++ E +++L GD Sbjct: 311 HNIIGAKMIPTIFKRLKFPMDTKMKYVRKLVDLHMRPIIIADEEVTDSAVRRLMNDAGDD 370 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDVVK-Y 373 + + + A + + F+ L+ L + + + + GD++++ + Sbjct: 371 I-DDLMTLCEADITSKNAARKQRFLDNFKTVREKLEDLKERDYKRLLQPCIDGDEIMEIF 429 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + P ++VG + K+ +++ +E L LL++ A Sbjct: 430 NLKPSREVGELKKALKEAVLDNRVPNEREPLMALLKEKAAE 470 >gi|302520496|ref|ZP_07272838.1| tRNA adenylyltransferase [Streptomyces sp. SPB78] gi|302429391|gb|EFL01207.1| tRNA adenylyltransferase [Streptomyces sp. SPB78] Length = 475 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 88/466 (18%), Positives = 171/466 (36%), Gaps = 71/466 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ D+D T P+ V+ + V Sbjct: 16 ADELARRFEEAGFTLALVGGSVRDALLGRLGNDLDFTTDARPEDVLALVRPWADAVWEVG 75 Query: 75 ISYGTIK----IICRKKY----FDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTIN 125 I++GT+ ++ ++TT RS+ R +V + + D +RRDFT+N Sbjct: 76 IAFGTVGCQKAARVGEEEQSFQIEVTTYRSEAYDRSSRKPQVSYGDSIEEDLVRRDFTVN 135 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ + + +D GGL+DL + ++ G +D LR+LR RF A + + Sbjct: 136 AMAVFLPEKRFVDPHGGLDDLAAKVLRTPGTPEASFSDDPLRMLRAARFAAQL-DFEVAP 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + + A + + I+S+ER+ E+NKLL + +P+ + + + G+ + ++ + L+ Sbjct: 195 EVVAAMTAMAERIDIVSAERVQGELNKLLLSAHPVKGLRLLVDTGLADRVLPELPALRLE 254 Query: 245 -------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------ 279 L+ + +A + E D LR L+ K Sbjct: 255 SDEHHRHKDVYEHSLTVLEQAIDLEEDGPDLTLRIAALLHDIGKPKTRRFEGDGRVSFHH 314 Query: 280 ------SMAKK----FSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKLFYLYGDKV 324 +AKK E+ + + + +++ G + Sbjct: 315 HEIVGAKLAKKRLAALKYSNELIRDVSRLIELHLRFHGYGTGEWTDSAVRRYVRDAGPLL 374 Query: 325 MI-------------AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + LA Y+ L + Q D I L G++++ Sbjct: 375 TRLHKLTRSDCTTRNKRKANALARAYDGLERRIEELQEQEELDAIR-----PDLDGNEIM 429 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + PG +G + L +E L++ A+ Q Sbjct: 430 ALLDVSPGPVIGKAYAFLLDLRMEKG-PLGKEAAGTALKEWWAAQQ 474 >gi|226328934|ref|ZP_03804452.1| hypothetical protein PROPEN_02836 [Proteus penneri ATCC 35198] gi|225202120|gb|EEG84474.1| hypothetical protein PROPEN_02836 [Proteus penneri ATCC 35198] Length = 473 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 126/309 (40%), Gaps = 31/309 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K D + + +L LN ++ +VGG VRD L+ +D DIAT P+ V R+F Sbjct: 39 ISRKDISD-NALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEDVRRLFR 97 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTR 111 +R + I+ + ++ T R G + Sbjct: 98 NSRL----VGRRFRLAHIMFGPEVIEVATFRGSHEDHEVSDNNQSQQAQSGMLLRDNIFG 153 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRDFT+N+LY V DYVGGL DL+ I+ IGD R ED +R+LR Sbjct: 154 SIEEDAIRRDFTLNSLYYGVDDFAVRDYVGGLADLKAGIIRLIGDPETRYREDPVRMLRA 213 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + + I + + L+ + S R++ E KLL+ M + Sbjct: 214 IRFASKL-DMQIAPETAEPISRLAPLLRNIPSARLFEESLKLLQTGQGYKTYKLMCRHQL 272 Query: 231 FKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279 + +F + E +DQ+ + + E +++ F ++ + + Sbjct: 273 LEPLFPLIASKMTEQHDTPMERMIDQILKNTDYRINKEMRVNPAFLFAAMLWYPLIEHAE 332 Query: 280 SMAKKFSLP 288 + ++ L Sbjct: 333 KLVQESGLS 341 >gi|327392774|dbj|BAK10196.1| poly(A) polymerase PcnB [Pantoea ananatis AJ13355] Length = 443 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 78/415 (18%), Positives = 150/415 (36%), Gaps = 55/415 (13%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK ++ +VGG VRD L+ +D D+ T P+++ ++F Sbjct: 10 TISRKDIS-ENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLF 68 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVF 109 R + ++ + ++ T R G + Sbjct: 69 RNCRL----VGRRFRLAHVMFGPEVIEVATFRGHHQIEETSDDHNNSQRAQSGMLLRDNI 124 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRD TIN+LY V DYVGGLNDL+ I+ IGD R ED +R+L Sbjct: 125 FGSIEDDAQRRDLTINSLYYSVADFSVRDYVGGLNDLQQGIIRLIGDPETRYREDPVRML 184 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + I + + L+ + + R++ E KLL+A + + + Sbjct: 185 RVARFAAKLNMR-IAPETAEPIPRLASLLRDVPAARLFEESLKLLQAGYGYSTWLKLCEY 243 Query: 229 GIFKEIFLDVQ-----------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS 277 +F+ +F + E L Q+ + + + +++ F + + ++ Sbjct: 244 QLFQPLFPTLARNFTENGDSHMERMLAQVLKNTDNRIQNDMRVNPAFLFAAMFWYPQLEA 303 Query: 278 ILSMA-----------------------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 +A + ++P+ I + + Sbjct: 304 AERIAQESGLTYYDAFALAMNDTLDEACRALAIPKRITSLIRDIWQLQLRMSRRHGKRAW 363 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 KL + L + + N + + + + +K + GDD Sbjct: 364 KLMEHPKFRAAYDLLSLRAEVENNPELLRLSKWWGEFQVAAPPQQKTMLNTLGDD 418 >gi|294635067|ref|ZP_06713582.1| polyA polymerase [Edwardsiella tarda ATCC 23685] gi|291091532|gb|EFE24093.1| polyA polymerase [Edwardsiella tarda ATCC 23685] Length = 457 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 79/391 (20%), Positives = 148/391 (37%), Gaps = 42/391 (10%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + + + + +L LNK + +VGG VRD L+ +D D+ T P++V ++F Sbjct: 26 TISRQQIS-ENALKVLYRLNKSGFDAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLF 84 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTR 111 R + ++ + ++ T R +G + Sbjct: 85 RNCRL----VGRRFRLAHVMFGPEIIEVATFRGHHEHADEGKNISQQGKNGMLLRDNVYG 140 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + + D+ RRDFTIN+LY V DY GGLNDLR I+ IGD R ED +R+LR Sbjct: 141 NIEEDAQRRDFTINSLYYSVADFTVRDYTGGLNDLRAGLIRLIGDPETRYREDPVRMLRA 200 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A +I + + L+ + + R++ E KLL+A + + + Sbjct: 201 VRFAAKL-RMDISPETAAPIARLAPLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQL 259 Query: 231 FKEIFL-----------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279 F+ +F E L Q+ + + + +++ F ++ + + Sbjct: 260 FQPLFPVICRHFTPNGDSPMENILAQVLKNTDHRLQNDMRVNPAFLFAAMLWYPLIELAQ 319 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIA 327 + ++ L + L + ++L+IP+ +L G + Sbjct: 320 KITQEGGLTYHDAFALAMNDILDEQCRSLAIPKRITALIRDIWTLQLRLSRRQGKRAHKL 379 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + Y+ L + L + W Sbjct: 380 LEQPKFRAAYDLLALRAEAERSAELQRLAEW 410 >gi|331700374|ref|YP_004336613.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudonocardia dioxanivorans CB1190] gi|326955063|gb|AEA28760.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudonocardia dioxanivorans CB1190] Length = 545 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 98/465 (21%), Positives = 165/465 (35%), Gaps = 72/465 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +VGG+VRD+L+ + D+D T P+R+ + + V Sbjct: 87 ADELGERFRAAGHVLYLVGGSVRDALLGRGAAAGGDLDFTTDARPERIQELLAGWADTVW 146 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL--- 127 T I +GTI +ITT R+D GR V F + D +RRDFT+NA+ Sbjct: 147 DTGIDFGTIGARRGDHVLEITTFRADAYDRVGRNPIVRFGDSIEGDLVRRDFTVNAMAVE 206 Query: 128 --YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 D Q + +D GGL L T+ +D LR+LR RF + G Sbjct: 207 VHAPDGQRRFVDPHGGLAALAAGTLDTPATPQESFADDPLRMLRGARFVSQLG-FAPAPR 265 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD- 244 + A L ++ ER+ +E +KL+ +P AI M + G+ + + +V + L Sbjct: 266 VVEAMTAMAGELARITKERVQAEFSKLILGAHPRRAIELMVDTGLAELVVPEVPAMRLAI 325 Query: 245 ---------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS------------ 277 L Q IE EQ D +LR L+ K Sbjct: 326 DEHMQHKDVYTHSLVVLEQAIEREQD---GPDLVLRLAALLHDVGKPDTRRKEPDGRVSF 382 Query: 278 ----------ILSMAKKFSLPREIRYFLISFFNCNFNQK----------------TLSIP 311 + ++ P+ + + + T + P Sbjct: 383 HHHEVVGAKMVRRRLRELRYPKVVVDEVAQLVFLHLRFHGYGNGEWTDSAVRRYVTDAGP 442 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + +L L + AL + + ++ L+ ++ + L G+ ++ Sbjct: 443 LLDRLHKLVRSDCTTRNRRRAAALQRSYDSLEERIAALREQEELDSIRPD---LDGNAIM 499 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + G+ PG VG H + LS E+ LR A + Sbjct: 500 QLLGLRPGPLVGKAYKHLLALRMERG-PLSHEEAEAELRAWAAEN 543 >gi|237809043|ref|YP_002893483.1| poly(A) polymerase [Tolumonas auensis DSM 9187] gi|237501304|gb|ACQ93897.1| poly(A) polymerase [Tolumonas auensis DSM 9187] Length = 521 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 112/254 (44%), Gaps = 18/254 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+K + +VGG VRD L+ +D D+ T P+++ ++F+ R Sbjct: 85 SENALKVLYRLHKAGYQGYLVGGGVRDLLLGKIPKDFDVVTDAHPEQIRKLFNNCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLR------------SDLITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R ++ +G + + D+ R Sbjct: 142 -IGRRFRLAHIVFGRDIIEVATFRGHHHQVNTSKNIAEQSEEGMLLRDNVYGTIEEDAER 200 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + D+ GGLNDL ++ IGD R ED +R+LR RF A G Sbjct: 201 RDFTVNALYYNIKDFSLHDFHGGLNDLAAGKLELIGDPETRYREDPVRMLRAVRFAAKLG 260 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I + L+ + S R++ E KL A + L+ + G+F+++F Sbjct: 261 -LTISDRSAEPISRLAPLLQDIPSARLFEETIKLFLAGHALSTYQLLRKFGLFQQLFPQA 319 Query: 239 QEISLDQLSQVIEA 252 ++ + E Sbjct: 320 AKLLTPDNNSAYER 333 >gi|56461352|ref|YP_156633.1| Poly(A) polymerase [Idiomarina loihiensis L2TR] gi|56180362|gb|AAV83084.1| Poly(A) polymerase [Idiomarina loihiensis L2TR] Length = 462 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 110/257 (42%), Gaps = 22/257 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + I +L L+ ++ +VGG +RD L+ L +D D+ T P+++ +F R Sbjct: 37 SKNAIKVLYRLHNSGFEAYLVGGCIRDILLGLEPKDFDVTTNATPEQIKSLFRNCRL--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLR----------------SDLITDGRYAKVVFTRDWKA 115 + ++ K+ ++ T R +D G+ + + Sbjct: 94 -IGRRFRLAHVVFGKEVIEVATFRGHHGASPQEENKKNRTADQDEHGQLVRDNVYGSIEE 152 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT NALY + + D+ G++D+ ++ IGD R ED +R+LR RF Sbjct: 153 DAERRDFTANALYYNIADFAIYDFANGVDDINAGILRMIGDPEVRYREDPVRMLRAVRFA 212 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 +D+ + L + R++ E K+ + + M + G+F+++ Sbjct: 213 TKLN-MQMDNSVSGPLKELAPLLINIPPARLFDEFLKMFMSGKAEANFLMMKDFGLFQQL 271 Query: 235 FLDVQEISLDQLSQVIE 251 F +++ D+ S + Sbjct: 272 FPMLKDYVADEQSPAYQ 288 >gi|119478378|ref|ZP_01618386.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143] gi|119448587|gb|EAW29833.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143] Length = 462 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 35/337 (10%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K D+ + +++ L K +VGG VRD L+ +D DIAT P++V ++F Sbjct: 38 TISRKNISDA-ALRVMTTLRKAGFAGFLVGGGVRDLLLGGRPKDFDIATDATPEQVRKLF 96 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRS-----DLITDGRYA------------- 105 +R + + + ++ ++TT R + G+ Sbjct: 97 HNSRI----IGRRFKIVHVRFGREIIEVTTFRGTHEQVEQSPKGKRPQNQNSAQSKNGML 152 Query: 106 -KVVFTRDWKADSLRRDFTINALYA-DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILED 163 + + D++RRDFTINALY V DY GL DL + I+ IGD R ED Sbjct: 153 LRDNVFGTVEEDAVRRDFTINALYYTTADFAVYDYTSGLRDLDEKIIRIIGDPETRYRED 212 Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223 +R+LR RF A I+ + ++ L + + R++ E+ KLL + + Sbjct: 213 PVRMLRAVRFAAKLN-FTIEKNTAKPILRLAPSLADIPAARMFDEVLKLLMSGYGADVYK 271 Query: 224 HMYNGGIFKEIFLDVQ--------EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275 M G+F+ +F Q I ++Q + +A + F L+ W Sbjct: 272 LMQQYGLFEPLFPQTQPCLQQPQANILVEQAIKNTDARIQQGKPVTPAFIFAALL-WPAV 330 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 K +P + + Q+ ++P+ Sbjct: 331 NERQQQLVKERVPEIPAMHQAAQEIASMQQQHTAVPK 367 >gi|117929346|ref|YP_873897.1| metal dependent phosphohydrolase [Acidothermus cellulolyticus 11B] gi|117649809|gb|ABK53911.1| metal dependent phosphohydrolase [Acidothermus cellulolyticus 11B] Length = 525 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 89/452 (19%), Positives = 167/452 (36%), Gaps = 54/452 (11%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + G + +VGG++RD+L+ V D+D+AT+ PD V+++ T Sbjct: 33 LDELGQRFAHGGHELALVGGSIRDALLERPVVDLDLATSARPDEVLKLAKGWAESQWETG 92 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 I++GT+ + + + +ITT R++ R V + D RRDFT+NA+ + Sbjct: 93 IAFGTVGLRKDRYHLEITTYRAERYDPTSRKPAVEYGESLLDDLKRRDFTVNAIALTLPE 152 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +++D G+ DL R I G +D LR+LR RF A G +D + A Sbjct: 153 HELVDPFDGIRDLLRRRITTPGRPEDSFSDDPLRMLRAARFAAQLG-FTVDPHVVAAMTA 211 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L ++S+ERI E KLL A P +V + + G+ ++ + + + Sbjct: 212 MAARLDVVSAERIRDEFTKLLLAPEPRRGLVLLVDTGLADRFLPELPALRRLEADREYRH 271 Query: 253 EQVFEW--------------KIDSLLRFIVLISWQDKKS--------------------- 277 + V+E + D +LR L+ K + Sbjct: 272 KDVYEHTLTVLDQAIALEDGEPDLVLRLAALLHDIGKPATRRKEPDGRVSFHHHEVVGKK 331 Query: 278 -ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKL---- 329 + P+++ + + E Y+ ++ +L Sbjct: 332 LAKARLTALKFPKDVVNDVSRLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLDRLHKLT 391 Query: 330 ------KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVG 382 + + ++ L L G ++ + GIPPG ++G Sbjct: 392 RSDCTTRNKKKAAALQAAYDSLVQRIEALRRQEEIDAIRPELNGHEIGEILGIPPGPELG 451 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + + + +E+ +LR+ A Sbjct: 452 RAYRFLLELRLERG-PIGKENAAAVLREWAAE 482 >gi|220934061|ref|YP_002512960.1| Polynucleotide adenylyltransferase [Thioalkalivibrio sp. HL-EbGR7] gi|219995371|gb|ACL71973.1| Polynucleotide adenylyltransferase [Thioalkalivibrio sp. HL-EbGR7] Length = 465 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 22/243 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L + ++C+VGG VRD L+ +D D+AT P++V ++F R Sbjct: 41 ALKVLYRLREAGFRACLVGGGVRDLLLGREPKDFDVATDAHPEQVRQLFRNCRL----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----------------TDGRYAKVVFTRDWKADSL 118 + + ++ ++ T R+ DGR + + D+ Sbjct: 97 RRFRLAHVQFGREIIEVATFRAPHEVLNGDDDEEFNGDALVEDGRIIRDNVYGTIEQDAW 156 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D + V+DY GG+ DL+ ++ IGD R ED +R+LR RF Sbjct: 157 RRDFTINALYYDIEDFSVVDYAGGMADLKAGVLRLIGDPEVRFREDPVRMLRAVRFAGKL 216 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G + +D A + L+ ++ R++ E KL + L + +F+ +F Sbjct: 217 GFR-LDIACEQAIPRMAGLLEEVAPARLFDEAIKLFHSGYGLQTFEMLRRHDLFRFLFPA 275 Query: 238 VQE 240 +E Sbjct: 276 TEE 278 >gi|163842263|ref|YP_001626668.1| tRNA nucleotidyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162955739|gb|ABY25254.1| tRNA nucleotidyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 487 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 165/468 (35%), Gaps = 64/468 (13%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 M+ ++ D ++ + + +VGG VRD + D+D T +PD + Sbjct: 1 MMQVLDSSTL-DPIVLELGQRFVDAGFELSLVGGPVRDLFLGRQSPDLDFTTDAIPDETL 59 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLR 119 + V ++GTI + R ++TT R++ D R +V F +AD R Sbjct: 60 VVVRSWADAVWEIGRAFGTIGLRKRDFTIEVTTYRAEAYDADSRKPEVAFGDSLEADLQR 119 Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NA+ G +++D GG+ DL ++ G A +D LR++R RF A G Sbjct: 120 RDFTMNAMALRLPGMELVDPYGGIRDLYAGVLRTPGRAEASFSDDPLRMMRAARFVAQLG 179 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + A I + + I+S+ER+ E+ KL+ A + + N G+ ++ +V Sbjct: 180 -VSLHPEVEGAMIAMAERINIISAERVRDELTKLICAPQARLGVDVLVNTGLADQMLPEV 238 Query: 239 QEISLDQLS------------QVIEAEQVFE-------WKIDSLLRFIVLISWQDKKSIL 279 + L+ QV+E E D +LRF L+ K + Sbjct: 239 SALQLEVDEHHRHKDVYQHSLQVLEQAAALETGPDGPVPGPDFVLRFAALMHDVGKPATR 298 Query: 280 SMA----------------------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPE 312 K + + + + + Sbjct: 299 RFEPSGAVSFRHHDMVGAKLTAKRMKALRFDNDTIKAVARLVELHMRFYGYGEAGWTDSA 358 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL---------- 362 +++ Y+ ++ +L + + D+ H L Sbjct: 359 VRR--YVTDAGPVLERLHRLTRSDVTTRNQKKADRLAFAYDDLEHRIAELAEQEELGAIR 416 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L G ++ + P VG +E + L E+ L Sbjct: 417 PDLDGAQIMAILDLKPSPVVGKAYKFLLEERMEHG-PLGAEEAQRRLE 463 >gi|325294588|ref|YP_004281102.1| polynucleotide adenylyltransferase region [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065036|gb|ADY73043.1| Polynucleotide adenylyltransferase region [Desulfurobacterium thermolithotrophum DSM 11699] Length = 881 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 92/423 (21%), Positives = 177/423 (41%), Gaps = 27/423 (6%) Query: 13 SDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 DL++++ + + D+ + IVGG VRD ++ D+DI + +K Sbjct: 462 KDLLDLIKKIGEFADEFGVNAYIVGGFVRDLILGRKNFDVDIVIEGDATEFAKKVAKKAN 521 Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T + T ++ D + R+++ V K D +RRDFTIN L Sbjct: 522 AKVHTFERFKTATVVFPDGFRIDFASARTEVYKAPGALPEVDMAPLKKDLMRRDFTINTL 581 Query: 128 YA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNI 182 + GK+ID+ GGL D+++R I+ + +ED RILR RF Y Sbjct: 582 AIKLNKKEFGKLIDFFGGLRDIKDRKIRILH--SLSFVEDPTRILRALRFATRYRFELGK 639 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---- 238 ++ L+ +K K + +RI+ E+ ++ NPL + + + IF + Sbjct: 640 HTEKLLKIAVQRKLFKTVEGQRIYHELKQIFLEDNPLRVVNKLAYYKVLSSIFPTIVWDK 699 Query: 239 -QEISLDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 ++ +++ +VI ++ + + LL F L+ Q + I + S+P + R Sbjct: 700 KKKDLFERIRKVIIWHKLNFQEKEIRYDLLYFGALLIGQSFQKIDTYLDNLSVPEKDREI 759 Query: 295 LIS-FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 L ++ K ++ Y ++++ K + L +LT ++ ++L Sbjct: 760 LKEILLKASYLLKEVNKERKNSEIYK-----LVSRFKEEVLLFAASLTEEEWKR-EKILE 813 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + W+ +TGD++ G+ PG IL K I+ +E ++ LI Sbjct: 814 YLKSWRFTKPAVTGDNLKAIGLKPGPIFREILNELKYRLIDKEIPEDKEKQLDFVKFLIK 873 Query: 414 SSQ 416 + Sbjct: 874 EEE 876 >gi|297379841|gb|ADI34728.1| CCA-adding enzyme [Helicobacter pylori v225d] Length = 407 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 169/401 (42%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 VID G N ++N+ I+ +G+ R ED LRILR RF A G K I A Sbjct: 125 SPTKGVIDPFKGQNAIKNQIIECVGEVRLRFFEDALRILRALRFSAALGFK-IAPSTKKA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 IFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKKCHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L+ F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLALE-FYALKNPKRALKIKSLLKEIFNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L ++ Sbjct: 345 TLQNLGYRR-QQIGEILNACLNLVIAHPENNSLEWLIKWVK 384 >gi|145297842|ref|YP_001140683.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850614|gb|ABO88935.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449] Length = 468 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 18/243 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNKG + +VGG VRD L+ + +D DIAT P+++ +FS R Sbjct: 29 SENALKVLYRLNKGGYDAYLVGGGVRDILLGRTPKDFDIATNATPEQIKALFSNCRL--- 85 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R +G + + D+ R Sbjct: 86 -IGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDAER 144 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + D+ GG+ DL R ++ IGD R ED +R+LR RF A Sbjct: 145 RDFTVNALYYSARDFTLHDFEGGIEDLAQRKLELIGDPETRYREDPVRMLRAMRFAAKL- 203 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + L+ + R++ E KL A + L M G+F+ +F V Sbjct: 204 DMTISPRSAAPIKELAPLLQDIPPARLFEETLKLFLAGDGLATYKLMREYGLFQPLFPQV 263 Query: 239 QEI 241 + Sbjct: 264 AAL 266 >gi|134298994|ref|YP_001112490.1| polynucleotide adenylyltransferase region [Desulfotomaculum reducens MI-1] gi|134051694|gb|ABO49665.1| Polynucleotide adenylyltransferase region [Desulfotomaculum reducens MI-1] Length = 907 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 87/415 (20%), Positives = 170/415 (40%), Gaps = 33/415 (7%) Query: 17 NILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 I+++L K + VGG VRD L+ + D+D+ + +K Sbjct: 460 RIMNILTKAGEVAEGLNYQVYAVGGLVRDVLLKVENLDVDLVVEGNGIEMANELAKVIGG 519 Query: 70 VIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + +GT +II Y D+ T R + V K D RRDFTINA+ Sbjct: 520 RVRPHEKFGTAEIIFPDGYWVDVVTARVEYYEYPAALPQVEQSSLKHDLYRRDFTINAMA 579 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ++ G+++DY G DL+N I+ + + +ED RILR RF Y + +I+ Sbjct: 580 VALNPERFGELVDYFNGREDLQNGAIRVLHN--LSFIEDPTRILRAIRFEQRY-DMDIEP 636 Query: 185 DGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ--- 239 L +A + + LS+ER+W E+ +LE +P + + + G++ +F ++ Sbjct: 637 QTLRLIKEAVREKVIARLSTERMWGELKHILEEADPEHMLDRLSELGVWDYLFPEITFWE 696 Query: 240 -EISLDQLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPR---EIR 292 + + ++ Q + + + W + L F+ ++ +++ ++ ++++L R E Sbjct: 697 VQYVISEIPQALMILRNWGWAEPAEKWLPYFLSILHLTAQETAYTICQRYNLGRRQTEKV 756 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352 I++ + + + + +FL L +D I + Sbjct: 757 LDTIAYGRVALRRLSATEEVPLSELTKIVQTLPREAYPMFLTLL------EDKNAIRRFR 810 Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + K + G D+ G PG L Q ++ Q +E+L ++ Sbjct: 811 LVMESVNKNKPTVNGKDIRDMGYQPGPMYRRALDSVWQARLDGMVQTREEELEYI 865 >gi|302390046|ref|YP_003825867.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermosediminibacter oceani DSM 16646] gi|302200674|gb|ADL08244.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thermosediminibacter oceani DSM 16646] Length = 449 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 100/439 (22%), Positives = 178/439 (40%), Gaps = 48/439 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I LN ++ +VGGA+RD ++ D DIAT LP+R+ IF+ IP Sbjct: 11 VKQICLELNTRGHQAFVVGGALRDIILGRESPDYDIATDALPERIASIFADA----IPYG 66 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133 ++GT+ +I ++T R D GR F D RRDFTIN++ D G Sbjct: 67 -NFGTMLLIRGNTKIEVTPFRDDA--PGRKPHYTFGGTIYTDLARRDFTINSMAYDPITG 123 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 + ID GGLNDL+ RTI+ G R+ ED LR LR RF A G I+ + + Sbjct: 124 QFIDPFGGLNDLKARTIRCTGST-KRVWEDPLRALRAARFQAQLG-FAIEPSTMYSLKAY 181 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-ISLDQLSQVIEA 252 L +S ERI E++KL+ + +P + +V + G+ I ++ E + + ++ + Sbjct: 182 ASMLDTISRERIRDELSKLITSDHPFDGLVTLVVTGLMNYIIPELMEGMGMRHFNKPADV 241 Query: 253 EQ----------------VFEWKIDSLLRFIVLI----------SWQDKKSILSMAKKFS 286 + + D + + ++ + K Sbjct: 242 LEHNLLACRYVKNSLHLRLAALLHDVGKPGCAVEGKKGLEFPGHHLKSVETAKHILKNLR 301 Query: 287 LPREIRYFLISFFNCNFNQKTLSIP--EIKKLFYLYGDKVMIA----KLKIFLALHYNNL 340 + ++ + + P E ++L G + + ++ LA +N Sbjct: 302 FDSKTIKKVLLLIEHHMFVYSPDSPLSEARRLISRVGWQNIYDLIELRMADRLASGFNEA 361 Query: 341 THQDTCFILQVLSDIIH----WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINS 395 ++ L ++ +K ++G ++++ GI G VG +L ++ I + Sbjct: 362 AGPGLKKLINDLEELKKENSDYKIKDLAVSGKELIETLGIRSGPIVGKLLNRLLEDVIEN 421 Query: 396 SFQLSQEDLHHLLRKLIAS 414 S+ L L K + Sbjct: 422 PELNSKRTLLELAEKYLKE 440 >gi|154508262|ref|ZP_02043904.1| hypothetical protein ACTODO_00758 [Actinomyces odontolyticus ATCC 17982] gi|293191173|ref|ZP_06609106.1| tRNA adenylyltransferase [Actinomyces odontolyticus F0309] gi|153797896|gb|EDN80316.1| hypothetical protein ACTODO_00758 [Actinomyces odontolyticus ATCC 17982] gi|292820594|gb|EFF79563.1| tRNA adenylyltransferase [Actinomyces odontolyticus F0309] Length = 509 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 87/456 (19%), Positives = 169/456 (37%), Gaps = 62/456 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ + ++ ++ ++ +VGG VRD+ + ++ D D+ T+ P+R + ++ Sbjct: 13 PAIMELGTIFDEAGEELALVGGPVRDAFLGVTPHDFDMTTSARPERTEELLAQWGNATWD 72 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 +GTI ++TT R+D G R +V F + D RRDFT+NA+ Sbjct: 73 IGKEFGTIGGRRGDLVVEVTTYRTDEYEIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRL 132 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q ++D GGL DL + ++ A +D LRI+R RF A G ++D D + A Sbjct: 133 PQMALVDPCGGLADLADGNLRTPVSAEQSFDDDPLRIMRAARFSAQLG-LDVDMDVMNAM 191 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----------- 239 L+I+S+ERI +E+ +L+ + P I M + G+ + +V Sbjct: 192 ETMASRLEIVSAERIRAELERLIISPYPRRGIELMVHTGVADIVLPEVAGLVSTVDEHKR 251 Query: 240 -----EISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMA--------- 282 E +L + Q ++ E + D +LRF L+ K + Sbjct: 252 HKDVYEHTLTVVEQAMDLETGPDGAVPAPDFILRFAALMHDVGKPATRRFEPNGTVSFHH 311 Query: 283 -------------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKV 324 K + + + + + S +++ GD Sbjct: 312 HEIVGAKMTRKRMKALHFDKATIEAVSNLVALHLRFHGYGEAAWSDSAVRRYVADAGD-- 369 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-Y 373 ++ +L + ++ D+ L GD +++ Sbjct: 370 LLERLHRLTRADCTTRNRRKANYLSAAYDDLETRIAALREQEELDAIRPDLDGDQIMEIL 429 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G+ P + V + + + + LL Sbjct: 430 GLRPSRAVKIARDYLLELRMERGPLGEEAARQALLD 465 >gi|283852932|ref|ZP_06370192.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp. FW1012B] gi|283571690|gb|EFC19690.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp. FW1012B] Length = 947 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 95/431 (22%), Positives = 165/431 (38%), Gaps = 49/431 (11%) Query: 16 INILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 +IL LL K +VGG VRD L+ D+D+ +K Sbjct: 471 KDILELLKKAGDLGREMGFAVYVVGGFVRDLLLKHPNYDVDLVVEGDGIAFAAAMAKAYG 530 Query: 69 KVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T II D+ T R + V K D RRDFT+NAL Sbjct: 531 GRYKAHPKFKTAVIILPGDARVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNAL 590 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-I 182 D+ G+++D+ G D++ R ++ + +ED RI+R RF +G + Sbjct: 591 AVHLLPDRFGELVDFFGAQRDIKERVLRVLH--SLSFVEDPTRIVRAIRFSERFGFRIGG 648 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 +D L+ + LS R++ E+ +LE KNPL + M + + + ++ Sbjct: 649 QTDRLIKNAVRHNFFHRLSGARVFHELRLILEEKNPLACLRRMQEYKLLAAVHP-LLALT 707 Query: 243 LDQLSQVIEAEQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKKFSLPR---- 289 + + ++E E V W + L+ F+ L S D + +AK+ + + Sbjct: 708 PARETVLMEVENVINWYRLLYIEPAPQNWLVYFLALCSGMDAEQFTVIAKRLNFSKRTAG 767 Query: 290 -------EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 +IR FN +++ LS +L++L + L + L Sbjct: 768 EIASLRVQIRETAQGLFNWEYHKGPLS-----ELYFLLEGLPIEGALFLMARNPREPLQK 822 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + + + + +TG+D+ K G+ PG + IL I+ E Sbjct: 823 YVSQHLTSL-------RGKRVEVTGNDLKKLGVEPGPQYTGILRRILGAVIDGHAPCRSE 875 Query: 403 DLHHLLRKLIA 413 L + R+L A Sbjct: 876 QLE-MARRLAA 885 >gi|51598959|ref|YP_073147.1| polynucleotide adenylyltransferase [Borrelia garinii PBi] gi|51573530|gb|AAU07555.1| polynucleotide adenylyltransferase [Borrelia garinii PBi] Length = 410 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 174/394 (44%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+++ R+ ED LRILR RF + K I+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNSNKRLAEDALRILRAARFSSTLNFK-IEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE KN I ++ FK F +L+ +++I+ + + Sbjct: 195 KERIKNEFHKLLEGKNIQKGIYYLKKVDFFKNFF------NLEIKTKLIKKTALLNKEKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + + + ++ + + N+ +I ++ + YL Sbjct: 249 YLKAITILTIEKPITELKEKLTLLKFSNKEIKLILFYRSIIDNKNIFNIKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I + FI++ + K PL + G D+ Sbjct: 309 KSTREHYKEIIDIYKALKGKKKKYLFIIKNIKRKKLLKNPLSLKDLKINGKDIQNLEEIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL I + +++ L ++ L Sbjct: 369 NKNIGKILNILLNHVIENPRLNTKKYLIKKIKTL 402 >gi|292489258|ref|YP_003532145.1| methionine gamma-lyase [Erwinia amylovora CFBP1430] gi|291554692|emb|CBA22417.1| methionine gamma-lyase [Erwinia amylovora CFBP1430] gi|312173418|emb|CBX81672.1| methionine gamma-lyase [Erwinia amylovora ATCC BAA-2158] Length = 481 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 78/408 (19%), Positives = 146/408 (35%), Gaps = 55/408 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 52 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL--- 108 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116 + ++ + ++ T R + G + + D Sbjct: 109 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSHRDQNGMLLRDNIFGSIEDD 167 Query: 117 SLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRD TIN+LY V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 168 AQRRDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 227 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I + + L + R++ E KLL+A + + + +F+ +F Sbjct: 228 KL-DMSIAAGTGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLF 286 Query: 236 LDVQEISLDQLSQVIEAEQVFEWK-----------IDSLLRFIVLISWQDKKSILSMAKK 284 + +Q +E + K ++ F + + + A++ Sbjct: 287 PIITRYFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKFAQE 346 Query: 285 -----------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 ++P+ I + + KL Sbjct: 347 SGLVYYDAFALAMNEVLDEACRSLAIPKRITTLVRDIWQLQLRLSRRHGKRAWKLMEHPK 406 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + L + + N+ + T + + +K + GDD Sbjct: 407 FRAAFDLLALRAEVENNHELQRLTTWWSEFQVSAPPQQKTMLNTLGDD 454 >gi|313159501|gb|EFR58864.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Alistipes sp. HGB5] Length = 469 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 83/459 (18%), Positives = 169/459 (36%), Gaps = 55/459 (11%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + I L + ++ +VGG VRD + DID+ + + + Sbjct: 3 LTNPIFRRISRLAEEQGVRAFVVGGYVRDHFLRRPSTDIDVVVVGSGIALAEALGRELHA 62 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + ++GT + + + R + T V + D RRDFTINA+ Sbjct: 63 KVSVFKTFGTAMLRHKGVEVEFVGARRESYTQDSRKPQVEAGTLEDDQRRRDFTINAMAW 122 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 G+++D G++DL I+ D +D LR++R RF + G I+ + Sbjct: 123 SLNAGSFGELVDPFDGMDDLEECVIRTPCDPDVTFSDDPLRMMRAVRFASQLG-FTIEGE 181 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A + ++I+S ERI +E+NK++ + P + G+ + IF ++ + + Sbjct: 182 TFDAIRRNAHRIRIVSRERIAAELNKIVLSPVPSMGFELLELTGLLELIFPEMHNLKGVE 241 Query: 246 LSQVIEAEQVFEWKI-----------DSLLRFIVLISW---------------------- 272 + F + D LR+ ++ Sbjct: 242 KRGAHAHKDNFIHTLKVLDNVARRSGDLWLRWAAVLHDIAKPLTKAYDPKVGWTFHGHEV 301 Query: 273 QDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKVMI 326 K + ++ ++ LP E F+ + LS +++L + GD V Sbjct: 302 LGSKMVPAIFRQLKLPLNEHMKFVQKLVFLHLRPIILSEDLVTDSAVRRLLFEAGDDVE- 360 Query: 327 AKLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVK-YGIP 376 + + A + + + ++ L + + P+TG+ +++ YGI Sbjct: 361 QLMILCEADITSGIDAKVKRYLANFELVRRKMKDLEERDRIRNFQPPITGEIIMQTYGIG 420 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 P + +G+I K ++ + + L+ +L A Sbjct: 421 PCRAIGDIKEVIKNAILDGEIPNDYDAAYALMERLAAEK 459 >gi|254491967|ref|ZP_05105145.1| poly(A) polymerase subfamily [Methylophaga thiooxidans DMS010] gi|224462782|gb|EEF79053.1| poly(A) polymerase subfamily [Methylophaga thiooxydans DMS010] Length = 456 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 80/402 (19%), Positives = 156/402 (38%), Gaps = 40/402 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + +N+L L ++ +VGG VRD L+ +D D++T LP++V ++F Sbjct: 36 ISRKQISQ-NALNVLYTLKDAGFEAYLVGGCVRDLLLGHEPKDFDVSTNALPEQVHKLFR 94 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSL 118 ++R + + + ++ ++ T R+ D+ GR + + D+ Sbjct: 95 RSRL----IGRRFKLVHVRFGREVIEVATFRAPPGANGDVDAQGRIVQDNVYGTLEQDAW 150 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NALY + +IDY GG+ DL I+ IGD R ED +R+LR RF A Sbjct: 151 RRDFTVNALYYNIRDFSIIDYTGGIEDLNAGVIRLIGDVETRYREDPVRMLRALRFVAKL 210 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +D+ LK + R++ E KL + N + + G+F ++ Sbjct: 211 G-LQVDAKTEQGIFNWGSLLKDIPPARLFDETLKLYLSGNAAVTHELLCHYGLFDHMYP- 268 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 + + + D+ R +++ + ++ S + K + + I Sbjct: 269 -------------QTAVLLHQEEDNYPRTLLMKALENTDSRIDANKPVTP--AFLFAAIL 313 Query: 298 FFNCNFNQKTLSIPEIKKL--FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + L + ++ +V+ +++ +L +D + L+ Sbjct: 314 WEPVRQRMQLLMENGMPEIPAMQRAASEVITDQIQRVAIPKRYSLVTRDIWTLQPRLTKR 373 Query: 356 IHWKKPLFPL-----TGDDVVKYGIPPGKKVGNILVHCKQEW 392 + L D + G L W Sbjct: 374 QGKRAFKSLLHPKFRAAYDFLALRSDAG----EPLAELVDWW 411 >gi|283787184|ref|YP_003367049.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Citrobacter rodentium ICC168] gi|282950638|emb|CBG90310.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Citrobacter rodentium ICC168] Length = 410 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDTLLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G +ID G Sbjct: 57 ---EYALARTERKSGPGYTGFTCYAAPDVTLEEDLQRRDLTINALAQDDDGNIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 ADLKNRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETMALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F +V + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEVDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S +IR+ + C+ K L+ PE+ + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPEVDIRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D + D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DIRDLAKRVAEFHDLIHTFPVLQPKT 318 >gi|255036177|ref|YP_003086798.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dyadobacter fermentans DSM 18053] gi|254948933|gb|ACT93633.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dyadobacter fermentans DSM 18053] Length = 471 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 84/442 (19%), Positives = 165/442 (37%), Gaps = 55/442 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI--P 72 L + + + ++ I+GG VRD ++ + +DIDI + + + + + Sbjct: 13 LEKVAAAAKELGVEAYIIGGFVRDLILKRNSKDIDIVSIGSGIELAEMVAGRLGPDVFVS 72 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 ++GT +I + R + V D RRDFTINA+ Sbjct: 73 VFKNFGTAQIRQGDLEIEFVGARKESYRSESRKPAVEDGTLADDQNRRDFTINAMGISLN 132 Query: 133 ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+++D G++DLR + I+ D +D LR++R RF + +I+ D Sbjct: 133 AGTFGELVDPFEGMSDLRKKIIRTPLDPEITFSDDPLRMMRAIRFASQLN-FDIEPDTFD 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A +K K + I+S ERI E+NK++ +K P +Y+ G+ IF ++ E+ + + Sbjct: 192 AIVKMKDRISIVSMERISDELNKIIRSKTPSYGFKLLYHAGLLAIIFPEMVELQGVEHIE 251 Query: 249 VIEAEQVFEWKI-----------DSLLRFIVLISWQDKKSILSMAK-------------- 283 + F + D LR+ ++ K + K Sbjct: 252 GKGHKDNFYHTLQVLDNVAQVSDDLWLRWAAILHDIAKPATKKFDKRHGWSFHNHEEVGA 311 Query: 284 --------KFSLP-REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 + LP E F+ + LS EI ++ + Sbjct: 312 RMVPVIFRRMKLPLNEKMRFVKKLVRLHLRPIVLSKEEITDSAMRRLLVEAGEDIEALMN 371 Query: 335 LHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 L ++T ++ + + L + + +TG+ +++ +G+ P ++ Sbjct: 372 LCRADITSKNPEKVRRFISNFDLVEQKLKDLEERDKLRNFQPVITGEMIMEAFGLKPARE 431 Query: 381 VGNILVHCKQEWINSSFQLSQE 402 VG I ++ + E Sbjct: 432 VGVIKEAIREAILEGIVPNEYE 453 >gi|219685520|ref|ZP_03540337.1| polynucleotide adenylyltransferase [Borrelia garinii Far04] gi|219672919|gb|EED29941.1| polynucleotide adenylyltransferase [Borrelia garinii Far04] Length = 410 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 175/393 (44%), Gaps = 18/393 (4%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 + +VGGA+RD L+N D D AT P+ ++ +F I T I +GTI II Sbjct: 21 NYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIITLFPNN----IKTGIKHGTIGIIFN 76 Query: 86 KKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGL 142 KK F+ITT R + + R K V +T++ D RRDFTINA+ D +ID G Sbjct: 77 KKIFEITTYRIEKEYENNRTPKQVEYTKNLIKDLERRDFTINAIAMDIFNFNIIDCYNGK 136 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL + I+ IG+++ R+ ED LRILR RF + K I+ + L++ K+ + ++S Sbjct: 137 KDLNKKIIRCIGNSNKRLEEDALRILRAARFSSTLNFK-IEKNTLISMKYKKENILMISK 195 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ERI +E +KLLE KN I ++ FK F +L+ +++I+ + + Sbjct: 196 ERIKNEFHKLLEGKNIQKGIYYLKKVDFFKNFF------NLEIKTKLIKKTALLNKEKFY 249 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 L +L + K + + ++ + + N+ +I ++ + YL Sbjct: 250 LKAITILTIEKPIKELKEKLTLLKFSNKEIKLILFYRSIIDNKNIFNIKKLSDIRYLLSK 309 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPPG 378 +I + FI++ + K PL + G D+ Sbjct: 310 STREHYKEIIDIYKALKGKKKKYLFIVKNIKRKKLLKNPLSLKDLKINGKDIQNLEEIEN 369 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL I + +++ L ++ L Sbjct: 370 KNIGKILNTLLSHVIENPKLNTKQYLIERIKIL 402 >gi|262273771|ref|ZP_06051584.1| poly(A) polymerase [Grimontia hollisae CIP 101886] gi|262222186|gb|EEY73498.1| poly(A) polymerase [Grimontia hollisae CIP 101886] Length = 451 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 138/324 (42%), Gaps = 28/324 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+N +D DIAT P+ V ++F R Sbjct: 31 SENALKVLYRLNKAGFEAYLVGGGVRDLLLNKQPKDFDIATNATPEEVRKLFRNCRL--- 87 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + ++ T R DG + D+ RR Sbjct: 88 -VGRRFRLAHILFGRDVIEVATFRGHHAGDKSDKAAARSNDGMLLRDNVYGTIDEDAERR 146 Query: 121 DFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY + V DY GG+ DL+NRTI+ IGD R ED +R+LR RF A + Sbjct: 147 DFTINALYYNIDDFSVRDYAGGVEDLKNRTIRLIGDPETRYREDPVRMLRAVRFAAKL-D 205 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I+ L+ + + R++ E KLL++ L + + +F +F + Sbjct: 206 MRINEATAAPIPALAHLLRDIPAARLFEESLKLLQSGQGLATYRLLRDFNLFSPLFPLLD 265 Query: 240 EIS-----------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 E L+ + + +A + +I+ F ++ + + +A + L Sbjct: 266 EHFTEDHSSKCEKMLELVLKSTDARVAKDQRINPAFMFAAMLWYPLETRAEEIAFESGLS 325 Query: 289 REIRYFLISFFNCNFNQKTLSIPE 312 + + + + K+++IP Sbjct: 326 YYDAFMVAANDILDEQVKSIAIPR 349 >gi|315446809|ref|YP_004079688.1| tRNA adenylyltransferase [Mycobacterium sp. Spyr1] gi|315265112|gb|ADU01854.1| tRNA adenylyltransferase [Mycobacterium sp. Spyr1] Length = 486 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 83/454 (18%), Positives = 173/454 (38%), Gaps = 61/454 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL---SVQDIDIATTILPDRVMRIFSKTRYKVI 71 L ++ + + +VGG VRD+L+ D+D T P+++ R+ + Sbjct: 25 LRDLGRVFADNGHELYLVGGPVRDALLGRFDPDKNDLDFTTDARPEQMQRVLRGWGDALW 84 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY-- 128 T I +GT+ + + +ITT R+D R +V F + D +RRDFT+NA+ Sbjct: 85 DTGIEFGTLGVGKGEDRLEITTFRADTYDKVSRNPEVRFGDNLADDLVRRDFTVNAMAVR 144 Query: 129 --ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 AD + +D + GL+ LR+ + +D LR+LR RF + G + Sbjct: 145 VTADGPTEFLDPLDGLSALRDGVLDTPAAPEVSFGDDPLRMLRAARFVSQLG-FTVAPRV 203 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 A + L +++ER+ +E++KLL +P+ + M + G+ + + +V + + + Sbjct: 204 RRALEEMSSQLSRITAERVAAELDKLLLGADPVAGLDLMVDTGLGEVVLPEVGAMRM-AI 262 Query: 247 SQVIEAEQVFEWK---------------IDSLLRFIVLISWQDKKSIL------------ 279 + + + V++ D +LR+ L+ K + Sbjct: 263 DEHHQHKDVYQHSLTVLRQAMDLEGADGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHH 322 Query: 280 ----------SMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMI 326 ++ +++ + + + Y+ ++ Sbjct: 323 HEVVGAKMTRKRMRELKYSKQMISDVSQLVYLHLRFHGYGDGRWTDSAVRRYVTDAGPLL 382 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGI 375 +L + + + D+ + + G++++K GI Sbjct: 383 TRLHKLVRADCTTRNKRRAARLQANYDDLERRIQDLAAREDLARVRPDIDGNEIMKILGI 442 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 PPG +VG H K+ ++ E + L+R Sbjct: 443 PPGPQVGQAWNHLKELRLDRGPLDHDEAVEELVR 476 >gi|251792689|ref|YP_003007415.1| poly(A) polymerase [Aggregatibacter aphrophilus NJ8700] gi|247534082|gb|ACS97328.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Aggregatibacter aphrophilus NJ8700] Length = 421 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 137/325 (42%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + + + ++ L + ++ +VGG +RD L+ +D D+AT P+++ IF + R Sbjct: 3 NRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQRQCRL-- 60 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ ++ ++ T R++ +G + + D+ R Sbjct: 61 --VGRRFRLAHIMFGREIIEVATFRANHAESHNEKHAKQSEEGMLLRDNVYGTLEQDAER 118 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDF++NALY + + D+ G+ DL+N ++ IGD R ED +R+LR RF A Sbjct: 119 RDFSVNALYYNPQDNTLKDFFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 178 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +D + + LK + R++ E KLL+A + + G+F+++F + Sbjct: 179 MF-LDKPSEMPIKELAHLLKNIPPARLFEESLKLLQAGYGVKTYWLLRQYGLFEQLFPLL 237 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + + + E E+V + ++ F + ++ + + + L Sbjct: 238 SKYFTEYEDSMAEKMILRSLTSTDERVVDKLPLNPAFLFAAFFWYPLREQVEVLKNEGGL 297 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L S +L++P Sbjct: 298 NNHDAYALASNDVLELLCNSLAVPR 322 >gi|167035687|ref|YP_001670918.1| poly(A) polymerase [Pseudomonas putida GB-1] gi|166862175|gb|ABZ00583.1| poly(A) polymerase [Pseudomonas putida GB-1] Length = 462 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 20/248 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ D GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQ 154 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 155 RRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I+ L+ + R++ E KL + A + + +F+ +F Sbjct: 215 -DFGIEKHTFQPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP- 272 Query: 238 VQEISLDQ 245 +LD+ Sbjct: 273 ASAHALDE 280 >gi|329914129|ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480] gi|327545195|gb|EGF30466.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480] Length = 455 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 15/237 (6%) Query: 1 MVSIVQH---KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M+S +H S+ I + L + K+ +VGGAVRD L+ + +D DIAT P+ Sbjct: 24 MLSAKEHGIDPKLVSSNAIRVTQGLQQAGFKAFLVGGAVRDLLLGIKPKDFDIATNATPE 83 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTR 111 +V ++F + + + ++ + ++TT R + GR + Sbjct: 84 QVRKLFRRA----FIIGRRFQIVHVMFGQDLLEVTTFRGASVDAAPKDEHGRVLRDNTFG 139 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + D++RRDFTINA+Y D + V+DY GG+ D+RN+T++ IG R ED +R+LR Sbjct: 140 EQHEDAIRRDFTINAMYYDPDTQTVLDYHGGMADIRNKTLRIIGVPEERYREDPVRLLRV 199 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 RF A + ID+ + + + R++ E+ KLL + + + + H+ Sbjct: 200 VRFAAKL-DFTIDAATAAPIKTMAPLINNVPAARVFDEMLKLLMSGHAMACLHHLRK 255 >gi|15602729|ref|NP_245801.1| hypothetical protein PM0864 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721175|gb|AAK02948.1| PcnB [Pasteurella multocida subsp. multocida str. Pm70] Length = 501 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 151/395 (38%), Gaps = 41/395 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKT 66 + + + I+ L++ ++ IVGG +RD L+ +D D+AT LP+++ IF + Sbjct: 76 PRMINRNALGIVEKLHRHGFEAYIVGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQC 135 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-----------DGRYAKVVFTRDWKA 115 R + I+ + ++ T R+ +G + + Sbjct: 136 RL----VGRRFRLAHIMFGRDVIEVATFRASHNENNHESLAKQSKEGMLLRDNVYGTLEQ 191 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF Sbjct: 192 DAERRDFTVNALYYNPQDNTLRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRFM 251 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A ++ + LK + R++ E KLL+A + + G+F+++ Sbjct: 252 AKLDMF-LEKPSEQPIRELAPLLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQL 310 Query: 235 FLDVQEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAK 283 F + ++ + E E+V + +I+ F + ++ + + Sbjct: 311 FPSLMPYFTEKGDSLAERMILKALTSTDERVADKLRINPAFLFAAFFWYPLREKVEMLKN 370 Query: 284 KFSLPREIRYFLIS--------FFNCNFNQKTLSIPEIK----KLFYLYGDKVMIAKLKI 331 + L Y L S + T I +I +L G + + Sbjct: 371 EGGLNNHDAYALASSEILDLFCAALAAPRRHTAVIRDIWFLQLQLLKRSGQQPIRTMEHP 430 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 ++ L + + + W + F + Sbjct: 431 KFRAAFDLLAMRSEVEGGETIELATWWHEYQFSNS 465 >gi|86157905|ref|YP_464690.1| polynucleotide adenylyltransferase protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774416|gb|ABC81253.1| Polynucleotide adenylyltransferase region [Anaeromyxobacter dehalogenans 2CP-C] Length = 436 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 104/424 (24%), Positives = 178/424 (41%), Gaps = 30/424 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKV 70 ++++L L +S +VGGAVRD L++ D D+AT P +VM +F +V Sbjct: 14 EAILDVLRRLAAAGHRSWLVGGAVRDVLLHRPRAATDFDVATPATPQQVMALFR----RV 69 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALY 128 IPT I +GT+ ++ + ++TT R + DGR V F + +AD RRDFT+NA+ Sbjct: 70 IPTGIDHGTVTVLVGDEKVEVTTFRGEGDYVDGRRPATVTFLAELEADLARRDFTMNAMA 129 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D Q D G D+ R I+ +GD R ED LR +R RF A G + +D Sbjct: 130 YDPLQADFRDPFDGRVDMSRRRIRAVGDPAARFGEDGLRAMRAVRFAAQLGYR-LDPATR 188 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A A + ++ +S ER+ E+++L+ A +P A++ + G+ + + + L Sbjct: 189 AAIPGALEVVRKVSVERVAEELSRLVLASHPGPALLLLRRTGLLGVVVPALAALPLAAYR 248 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY---FLISFFNCNFN 304 + + LRF L+ + + LPR + L+ + C Sbjct: 249 HAVAV--AGHAPAEPALRFAALLHGVGPEEAARIVFGLRLPRRLSEEVGTLLRAYACPAA 306 Query: 305 QKTLSIP----EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 + ++P +I++ G + + + ++ A + +V Sbjct: 307 RHPAALPDAPADIRRWLARTGPQRVPSVFELVSAELRTLPPARHAAAAEEVRRARAAIDA 366 Query: 361 PL----------FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L L G V+ G PG VG L H + + + + L LR Sbjct: 367 QLAAAPPLAAGDLALDGRAVMALLGQGPGPHVGEALHHLLDRVLEDPARNTPDALEAELR 426 Query: 410 KLIA 413 + A Sbjct: 427 RWWA 430 >gi|291086145|ref|ZP_06354946.2| polyA polymerase [Citrobacter youngae ATCC 29220] gi|291069510|gb|EFE07619.1| polyA polymerase [Citrobacter youngae ATCC 29220] Length = 454 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 137/388 (35%), Gaps = 48/388 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LNK ++ +VGG VRD L+ +D D+ T PD+V ++F R Sbjct: 34 SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRL--- 90 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI------------TDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R +G + + D+ R Sbjct: 91 -VGRRFRLAHVMFGPEIIEVATFRGHHEGSEADRTTSQRGQNGMLLRDNIFGSIEEDAQR 149 Query: 120 RDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTIN+LY V DYVGG+ DL I+ IG+ R ED +R+LR RF A Sbjct: 150 RDFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRMLRAVRFAAKL- 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I + + L + R++ E KLL+A + +F+ +F + Sbjct: 209 DMRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREYSLFQPLFPTI 268 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + +E QV + +++ F + + ++ +A++ L Sbjct: 269 TRYFTEDGDSPMERIIAQVLKNTDNRINNDMRVNPAFLFAAMFWYPLLEAAQKIAQESGL 328 Query: 288 -------------------PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 I L S + + K + + Sbjct: 329 AYYDAFALAMNDVLDEACRSLAIPKRLTSLTRDIWQLQLRMSRRQGKRAWKLMEHPKFRA 388 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDII 356 LAL + + + Q + Sbjct: 389 AYDLLALRAEVENNAELQRLAQWWGEFQ 416 >gi|332308267|ref|YP_004436118.1| poly(A) polymerase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175596|gb|AEE24850.1| poly(A) polymerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 474 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 84/435 (19%), Positives = 164/435 (37%), Gaps = 64/435 (14%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+ ++ +VGG VRD L+ +D D+ T P++V +F R Sbjct: 47 SDNALKVLYRLHNNGYQAFLVGGCVRDILLGKKPKDFDVTTDATPEQVKELFRNCRL--- 103 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-----------------------ITDGRYAKVV 108 + ++ ++ ++ T R G+ + Sbjct: 104 -IGRRFRLAHVVFGREIIEVATFRGHHPSQDEDKENDKDKDSKGQNLSKQSDHGQLLRDN 162 Query: 109 FTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 + D+ RRDFT+NA+Y + + D+ G+ ++NR I IGD R ED +R+ Sbjct: 163 VFGSIEEDAERRDFTVNAMYYNIADYSIHDFANGMQAVKNRQITMIGDPATRYREDPVRM 222 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 LR RF G K I + + + + R++ E+ KLL + L+ + Sbjct: 223 LRAVRFSVKLGMK-ISPETAKPIYELAPLMANIPPARLFEEVLKLLLSGQGLDTYKLLNE 281 Query: 228 GGIFKEIFLDVQEISLDQLSQVIEA-EQVF---------EWKIDSLLRFIVLISWQDKKS 277 G+F+++F + + Q S+ + EQV + K+ F L+ + Sbjct: 282 FGLFEQLFPQLTPLLKSQNSRELAFIEQVLMNTDNRINSDMKVTPAFIFAALLWYP---- 337 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY 337 L + ++ +F+ L++ ++ L ++ + I + + Sbjct: 338 ---------LEERCQQHMVEGGLNHFDAFNLALSDV--LHRQIQRIMIPKRFTITVREIW 386 Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + + + H P F D ++ G G G +L Q W + F Sbjct: 387 QLQQRLPKRYGRRAFQMLEH---PKFRAAYDFLLIRGQIEG---GELL-ELSQWW--TDF 437 Query: 398 QL-SQEDLHHLLRKL 411 Q + E +L+ L Sbjct: 438 QNLNPEQRQGMLKTL 452 >gi|229592622|ref|YP_002874741.1| putative polynucleotide adenylyltransferase [Pseudomonas fluorescens SBW25] gi|229364488|emb|CAY52328.1| putative polynucleotide adenylyltransferase [Pseudomonas fluorescens SBW25] Length = 467 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 20/237 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +NI+ L ++ +VGG VRD L+N++ +D D+AT+ P++V F R Sbjct: 42 AVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVRAEFRNARI----IG 97 Query: 75 ISYGTIKIICRKKYFDITTLR--------------SDLITDGRYAKVVFTRDWKADSLRR 120 + + I ++ ++ T R S GR + + D+ RR Sbjct: 98 RRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGRILRDNVYGTLEEDAQRR 157 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY D +++DY G++D+RN I+ IGD R ED +R+LR RF A Sbjct: 158 DFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDPVQRYQEDPVRMLRAVRFAAKLN- 216 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+ + L+ + S R++ E+ KL + + + + +F +F Sbjct: 217 FGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFP 273 >gi|260914325|ref|ZP_05920794.1| polyA polymerase [Pasteurella dagmatis ATCC 43325] gi|260631426|gb|EEX49608.1| polyA polymerase [Pasteurella dagmatis ATCC 43325] Length = 499 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 132/330 (40%), Gaps = 31/330 (9%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKT 66 + + I ++ L++ ++ IVGG +RD L+ +D D+ T+ P+++ IF + Sbjct: 76 PRMINRNAIAVIEKLHRQGFEAYIVGGCLRDLLLGKHPKDFDVVTSARPEQIQNIFQRQC 135 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKA 115 R + I+ + ++ T R++ +G + + Sbjct: 136 RL----VGRRFRLAHIMFGRDIIEVATFRANHTESRNENHAKRSEEGMLLRDNVYGTIEQ 191 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF Sbjct: 192 DAERRDFTVNALYYNPQDNTLRDYFNGIEDLKAGKLRLIGDPATRYQEDPVRMLRSIRFM 251 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A ++ + LK + R++ E KLL+A + + G+F ++ Sbjct: 252 AKLDMF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGYGVKTYKLLREYGLFDQL 310 Query: 235 FLDV------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282 F + +++ + L+ E +++ F + ++ + + Sbjct: 311 FPSLIPYFTEKGDSFAEKMIITALTSTDERVSD-NLRVNPAFLFAAFFWYPFREKVEILK 369 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + L Y L S L+ P Sbjct: 370 NEGGLNNHDAYALASNDILELFCAALAAPR 399 >gi|183985441|ref|YP_001853732.1| poly(a) polymerase PcnA [Mycobacterium marinum M] gi|183178767|gb|ACC43877.1| poly(a) polymerase PcnA [Mycobacterium marinum M] Length = 481 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 94/456 (20%), Positives = 168/456 (36%), Gaps = 62/456 (13%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69 H + L + S +VGG+VRD+L+ D+D T P +V +I Sbjct: 21 HAAVLGELGSAFADAGHDLYLVGGSVRDALLGRLKSPDLDFTTDARPQQVQKIVRSWADA 80 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY 128 V T I +GTI I +ITT R+D R+ +V F + D +RRDFT+NA+ Sbjct: 81 VWDTGIEFGTIGIAKNDYRLEITTFRADSYDQVSRHPEVRFGERLEDDLVRRDFTVNAMA 140 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G+ +D +GGL+ LR++ + +D LR+LR RF + G + Sbjct: 141 VRITASGPGEFLDPLGGLSVLRDKVLDTPAAPSVSFGDDPLRMLRAARFVSQLG-FAVAP 199 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------ 238 A + L +S+ER+ +E++KLL +NP+ I M + G+ + + ++ Sbjct: 200 RVRDAIEEMAPQLARISAERVAAELDKLLLGENPVAGIDLMVHTGMGEVVLPEIGGMQMA 259 Query: 239 ----------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS----------- 277 + SL L Q IE E D +LR+ L+ K + Sbjct: 260 IDEHHQHKDVYQHSLTVLRQAIELEDD---GPDLVLRWAALLHDIGKPTTRRHEANGGVS 316 Query: 278 -----------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDK 323 + + +++ + + + Y+ Sbjct: 317 FHHHEVVGAKMVRKRMRALKYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAG 376 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVKY 373 ++A+L + + + + + L G+ ++ Sbjct: 377 PLLARLHKLVRADCTTRNKRRAARLQASYDRLEERITELAAQEDLDRVRPDLDGNQIMTL 436 Query: 374 -GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 IP G +VG + K+ + +E LL Sbjct: 437 LDIPAGPQVGEAWRYLKELRLERGPLTIEEAKAELL 472 >gi|210134846|ref|YP_002301285.1| poly(A) polymerase [Helicobacter pylori P12] gi|210132814|gb|ACJ07805.1| poly(A) polymerase [Helicobacter pylori P12] Length = 402 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 106/401 (26%), Positives = 169/401 (42%), Gaps = 27/401 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDVYEKSPYELYLVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKCHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N +RN+ I+ +G A R ED LRILR RF A G K I A Sbjct: 125 SPTKGLIDPFKGQNAIRNQVIECVGGARLRFFEDALRILRVLRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVIQEKIENLGFF 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L+ F AL T + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLALE-FYALKNPKRTLKIKSLLKEIFNANEPFKKEHLALKGS 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C + I + L L++ Sbjct: 345 ALQNLGYQHQK-IGEILNACLKLVIEN---PKNNALEWLIK 381 >gi|308061970|gb|ADO03858.1| poly(A) polymerase [Helicobacter pylori Cuz20] Length = 388 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 167/400 (41%), Gaps = 24/400 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 VID G N + N+ I+ +G+A R ED LRILR RF A G K I A Sbjct: 125 SPTKGVIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NK L KN ++EI V + ++ L + Sbjct: 184 IFACKDLLKHLSKERLQSELNKFLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 + E LR + Q + P++ + C+ Sbjct: 238 KKVPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L+ F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLALE-FYALKNPKRALKIKSLLKEIFNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G +++G IL C I S E L + Sbjct: 345 TLQNLGYQR-QQIGEILNACLNLVIAHPKNNSLERLVEWV 383 >gi|319786655|ref|YP_004146130.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1] gi|317465167|gb|ADV26899.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1] Length = 478 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 150/376 (39%), Gaps = 29/376 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L + + +VGGAVRD L+ + +D D+AT P++V ++F R Sbjct: 61 SPNALRVLYRLREAGFGAYLVGGAVRDLLLGMHPKDFDVATDATPEQVKQLFRNCRL--- 117 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKADSLRRDFT 123 + ++ ++ ++ T R+++ + DGR + + D++RRDFT Sbjct: 118 -IGRRFRLAHVVYGREIIEVATFRANVDDGSGDREVEDGRLVRDNVYGTIEDDAVRRDFT 176 Query: 124 INALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 NALY + V DY GG D+ R ++ IGD R ED +R+LR R A G +I Sbjct: 177 CNALYYAIEDFSVRDYTGGYEDVLARKMRLIGDPETRYREDPVRMLRAVRLAAKLG-FSI 235 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 D + L + R++ E+ KL + + + + + G+ + + Sbjct: 236 DPPTAEPIPRLAGLLAEAAPARLFEEMLKLFLSGHAVASFEGLERHGLLGALMPETAAAL 295 Query: 243 LDQLSQVIEA----------EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 S + +V + S L+ W L+ + +P E Sbjct: 296 RSNRSGALRRMVLKGLAGTDARVAADEPVSPAFLFALLLWPAYCRALAGLQAQGMPVEEA 355 Query: 293 YFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 + +T+++P+ +++++ L + ++F L + Sbjct: 356 QRRAADRVTLHQVQTIALPKRFSLPMQEIWLLQSRFSTRQRKRVFRLLAHPRFRAAYDFL 415 Query: 348 ILQVLSDIIHWKKPLF 363 L++ + H F Sbjct: 416 ALRLAASDSHAADVEF 431 >gi|300776646|ref|ZP_07086504.1| tRNA nucleotidyltransferase [Chryseobacterium gleum ATCC 35910] gi|300502156|gb|EFK33296.1| tRNA nucleotidyltransferase [Chryseobacterium gleum ATCC 35910] Length = 472 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 90/459 (19%), Positives = 179/459 (38%), Gaps = 62/459 (13%) Query: 15 LINILSLLNKGEDKS-CIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKV-- 70 L I+S + +S IVGG VRD LMN DID T + + ++ Sbjct: 13 LFKIISEAAERNHQSVYIVGGYVRDLLMNRKASTDIDFVTEQSGIELAQNVAQDIDPKLK 72 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA- 129 + +YGT I ++ + R + T+ V + D RRDFTINA+ Sbjct: 73 VSVFKTYGTAMIKYKELDLEFVGARKESYTENSRKPEVEGGSLEDDQKRRDFTINAMAIS 132 Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + G++ID G++DL ++ + +D LR++R RF + K I+ + Sbjct: 133 LNKNNFGELIDPFNGIDDLEKEILRTPLEPAQTYSDDPLRMMRAVRFASTLHFK-IEENS 191 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----- 241 L A + + ++I+S ERI E NK++ ++ P + M G+ K I ++ E+ Sbjct: 192 LKAIQQEAERIRIVSMERIMVEFNKIMLSEKPSVGLRLMEQTGLLKLIIPELIELKGVEE 251 Query: 242 -----SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS----------------------WQ 273 D +E D+L LR+ L+ + Sbjct: 252 VEGQTHKDNFYHTLEVVDNISVNTDNLWLRWAALLHDIGKAPTKKFVEGTGWTFHGHEFL 311 Query: 274 DKKSILSMAKKFSLP-----REIRYFL-ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 K + ++ ++ LP + ++ + +S S +++L + G + + Sbjct: 312 GSKMVKTLFQRLKLPLGSDMKYVQKMVKLSSRPIALITDDASDSALRRLLFDAG-ENLED 370 Query: 328 KLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVKY-GIPP 377 + A + + F + + + P+TG+++++ + P Sbjct: 371 LFTLCKADITTKNSRKQEKFKKNFEYVAVKIKEVEEKDQVRNFQPPITGEEIMEMFNLKP 430 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+++G + K+ + +E+ + IA ++ Sbjct: 431 GREIGILKEKVKEAILEGEIPNEKEEATKFV---IAEAE 466 >gi|254779373|ref|YP_003057478.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori B38] gi|254001284|emb|CAX29261.1| Putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori B38] Length = 402 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 169/401 (42%), Gaps = 27/401 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +++L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 NTELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G + + N+ I+ +G+A R ED LRILR RF A G K I A Sbjct: 125 SPTKGLIDPFKGQSAIENQVIECVGEARLRFFEDALRILRALRFSATLGFK-IAPSTKRA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEMAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCILFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++L+ +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKHALKIKGLLKEILNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + L L++ Sbjct: 345 ALQNLGYQHQK-IGEILNACLDLVIEN---PKNNALEWLIK 381 >gi|149927694|ref|ZP_01915946.1| probable polynucleotide adenylyltransferase protein [Limnobacter sp. MED105] gi|149823520|gb|EDM82750.1| probable polynucleotide adenylyltransferase protein [Limnobacter sp. MED105] Length = 485 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 121/265 (45%), Gaps = 20/265 (7%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + I + L K+ +VGGAVRD L+ + +D D+AT P++ R+F + R Sbjct: 56 RRLVSHNAIRVCETLQSKGYKAFVVGGAVRDLLLGMRPKDFDVATDASPEQTQRLFRRAR 115 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRD 121 + + ++ + + +T R+ + GR + D+ RRD Sbjct: 116 V----IGRRFQIVHVMFGPETIETSTFRALASASNEKDEHGRVLRDNEFGRQDEDASRRD 171 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NA+Y D + V DY G+ DLR+R ++ IG+ R ED +R+LR RF A Sbjct: 172 FTVNAMYYDPSTETVWDYHHGMEDLRSRVLRMIGEPSLRYREDPVRMLRVVRFAAKLN-F 230 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I+ + L+ + + R++ E+ KLL + + + + + G+ +F Sbjct: 231 EIEPATYAPIAELSDLLRNVPASRLFDEMLKLLMSGSAMACLKGLRKAGLHHGVFP---- 286 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLR 265 L ++E E+ + ++L R Sbjct: 287 ----LLDAILEHERGEPFLTEALAR 307 >gi|313500605|gb|ADR61971.1| PcnB [Pseudomonas putida BIRD-1] Length = 460 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ D GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDTHRSSHNASGRILRDNVYGTLEEDAQ 154 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D +++DY G++D+RNR ++ IGD R ED +R+LR RF A Sbjct: 155 RRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTQRYQEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I+ + L+ + R++ E KL + A + + +F+ +F Sbjct: 215 -DFGIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP- 272 Query: 238 VQEISLDQ 245 +LD+ Sbjct: 273 ASAHALDE 280 >gi|84497211|ref|ZP_00996033.1| putative RNA nucleotidyltransferase [Janibacter sp. HTCC2649] gi|84382099|gb|EAP97981.1| putative RNA nucleotidyltransferase [Janibacter sp. HTCC2649] Length = 483 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 160/467 (34%), Gaps = 72/467 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + +L + + +VGG VRD+ ++ + D+D T+ P+ I Sbjct: 15 LTELGALFTQAGHELALVGGPVRDAFLDRTPPDLDFTTSASPEETEAILRAWGTATWDMG 74 Query: 75 ISYGTIKIICR----KKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA 129 +GTI R + +ITT R+D R V F + D +RRDFT+NA+ Sbjct: 75 REFGTIGARRRVGGVETTVEITTYRADAYDGVTRKPVVAFGESLEEDLVRRDFTVNAMAL 134 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + ID GGL DL+ ++ +D LR++R RF A G + + Sbjct: 135 RLPSLEFIDPYGGLADLQAGWLRTPAAPEVSFGDDPLRMMRAVRFVAQLG-LDPAPEVYA 193 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD---- 244 A L+I+S+ERI E+ KLL A P + + G+ + ++ + L+ Sbjct: 194 AMQAMAASLEIVSAERIRDELVKLLLAPRPRAGLELLTVTGLAAHVLPELPALQLEVDEH 253 Query: 245 ------------QLSQVIEAEQVFE------WKIDSLLRFIVLISWQDKKSILSM----- 281 L Q I+ E + D +LR L+ K + Sbjct: 254 HRHKDVYDHSLIVLEQAIDLEGPADGPVESVPGPDLVLRLAALLHDIGKPATRRFEPAGG 313 Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFNQK----------------TL 308 K +E + + T Sbjct: 314 VSFHHHEVVGAKLTAKRLKALRFDKETIKAVSRLVELHLRFHGYGDGAWTDSAVRRYITD 373 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + P + +L L ++ L T+ + + +L + L G+ Sbjct: 374 AGPLLPRLHRLTRADCTTRNVRKAQRLSR---TYDELERRIGLLLEQESLAAVRPELDGN 430 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 ++ + GI PG +G + ++ + E LR A Sbjct: 431 EIAELLGIKPGPVLGRAYKYLLSVRLDEG-PIGPEAAADRLRTWWAE 476 >gi|170719922|ref|YP_001747610.1| poly(A) polymerase [Pseudomonas putida W619] gi|169757925|gb|ACA71241.1| poly(A) polymerase [Pseudomonas putida W619] Length = 462 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 19/239 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRHAVNIVERLQGAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ D GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDSHRSSHNASGRILRDNVYGSLEEDAQ 154 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D +V+DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 155 RRDFTINALYYDPVSERVLDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ L+ + R++ E KL + + + +F+ +F Sbjct: 215 -DFGIEKHTFQPIRGLAPLLREIPPARLFEECLKLFLSGQGAIVFEMLVDLALFEPLFP 272 >gi|308182871|ref|YP_003926998.1| poly(A) polymerase [Helicobacter pylori PeCan4] gi|308065056|gb|ADO06948.1| poly(A) polymerase [Helicobacter pylori PeCan4] Length = 388 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 106/401 (26%), Positives = 169/401 (42%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHDFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSSRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LR+LR RF A G K I S A Sbjct: 125 SPTKGLIDPFKGQNAIENQMIECVGEARLRFFEDALRVLRALRFSATLGFK-IASSTKKA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 IFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KSAPFNLE------LRLLGFFKRQKS------LENLRYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKRALKIKSLLQEIFNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L +R Sbjct: 345 TLQNLGYRR-QQIGEILNACLNLVIAHPENNSLECLVEWVR 384 >gi|291284435|ref|YP_003501253.1| TRNA nucleotidyltransferase [Escherichia coli O55:H7 str. CB9615] gi|209759338|gb|ACI77981.1| tRNA nucleotidyl transferase [Escherichia coli] gi|209759344|gb|ACI77984.1| tRNA nucleotidyl transferase [Escherichia coli] gi|290764308|gb|ADD58269.1| TRNA nucleotidyltransferase [Escherichia coli O55:H7 str. CB9615] gi|320645427|gb|EFX14436.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H- str. 493-89] gi|320650738|gb|EFX19195.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H- str. H 2687] gi|320656116|gb|EFX24028.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661806|gb|EFX29214.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O55:H7 str. USDA 5905] gi|320666957|gb|EFX33933.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. LSU-61] Length = 412 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|119871509|ref|YP_941461.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] gi|119697598|gb|ABL94671.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS] Length = 489 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 89/459 (19%), Positives = 170/459 (37%), Gaps = 58/459 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L +I ++ + +VGG+VRD+L+ D+D T P+++ + T Sbjct: 29 LRDIGAVFAEAGHTLYLVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132 I +GT+ + +ITT R+D R V + + D +RRDFT+NA+ Sbjct: 89 IEFGTVGVGKAGHRMEITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITA 148 Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G+ D +GGL LR + + +D LR+LR RF + G + A Sbjct: 149 AGPGEFHDPLGGLAALRAKVLDTPSAPEVSFGDDPLRMLRAARFASQLG-FGVAPRVRTA 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLS 247 + L ++ ER+ +E++KLL +P+ I M G+ + +V +++D+ Sbjct: 208 MTEMAPQLSRITVERVAAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRLAIDEHH 267 Query: 248 Q----------VIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------------ 279 Q V+ E D +LR+ L+ K + Sbjct: 268 QHKDVYWHSLTVLRQAIDLEDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGA 327 Query: 280 SMAKK----FSLPREIRYFL-------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 MA+K +++ + + F + + Y+ ++ + Sbjct: 328 KMARKRMRALKYSKQMVDDVSQLVFLHLRFHGYGDAKGPGKWTDSAVRRYVTDAGPLLDR 387 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPP 377 L + + + D+ ++ L G+++++ IP Sbjct: 388 LHKLVRADCTTRNKRRAARLQANYDDLERRIAELAAKEDLQRVRPDLDGNEIMRLLDIPA 447 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G +VG H K+ + E + LL+ A + Sbjct: 448 GPQVGEAWRHLKELRLERGPLSHDEAVDELLKWWNAEPR 486 >gi|325578734|ref|ZP_08148781.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC 33392] gi|325159558|gb|EGC71690.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC 33392] Length = 430 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 74/370 (20%), Positives = 148/370 (40%), Gaps = 29/370 (7%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKT 66 + I ++ L + ++ IVGG +RD L+ +D D+AT PD++ +F + Sbjct: 10 PRMFSRNAITVVEKLQRQGYEAYIVGGCLRDLLLGKHPKDFDVATNARPDQIQAVFQRQC 69 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKA 115 R + I+ + ++ T R+ +G + + Sbjct: 70 RL----VGRRFRLAHIMFGRDVIEVATFRASHSDARSENQAKQSDEGMLLRDNVYGTIEQ 125 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT+NALY + + DY G++DL+N ++ IGD R ED +R+LR RF Sbjct: 126 DAERRDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSVRFM 185 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A ++ + LK + R++ E KLL++ N + + G+F+++ Sbjct: 186 AKLDMF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQSGNGVKTYKLLRQYGLFEQL 244 Query: 235 FLDVQEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAK 283 F + ++ + E E++ + +I+ F + ++ + + Sbjct: 245 FPSLTPYFTEKEDSLAERMILTSLNSTDERIADKLRINPAFLFAAFFWYPLREKVDVLKN 304 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + L Y L + + ++L+ P + + LK + + HQ Sbjct: 305 EGGLNNHDAYALATNEVLDQLCRSLAAPRRHTSVIRDIWMLQLQLLKRTGSHPARTMEHQ 364 Query: 344 DTCFILQVLS 353 +L+ Sbjct: 365 KFRAAFDLLA 374 >gi|292898512|ref|YP_003537881.1| poly(A) polymerase [Erwinia amylovora ATCC 49946] gi|291198360|emb|CBJ45466.1| poly(A) polymerase [Erwinia amylovora ATCC 49946] Length = 457 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 78/408 (19%), Positives = 146/408 (35%), Gaps = 55/408 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D D+ T PD++ ++F R Sbjct: 28 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRL--- 84 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD---------------GRYAKVVFTRDWKAD 116 + ++ + ++ T R + G + + D Sbjct: 85 -VGRRFRLAHVMFGPEIIEVATFRGHHEAEQQVVEDRNSSHRDQNGMLLRDNIFGSIEDD 143 Query: 117 SLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRD TIN+LY V DYVGGL+DL+ I+ IGD R ED +R+LR RF A Sbjct: 144 AQRRDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPETRYREDPVRMLRVVRFAA 203 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I + + L + R++ E KLL+A + + + +F+ +F Sbjct: 204 KL-DMSIAAGTGEPIPRLATLLHDIPPARLFEETLKLLQAGYGHSTYLKLLEYQLFQPLF 262 Query: 236 LDVQEISLDQLSQVIEAEQVFEWK-----------IDSLLRFIVLISWQDKKSILSMAKK 284 + +Q +E + K ++ F + + + A++ Sbjct: 263 PIITRYFTEQGDSNMERMILLVLKNTDTRIHNQMRVNPAFLFAAMFWYPQLEMAQKFAQE 322 Query: 285 -----------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 ++P+ I + + KL Sbjct: 323 SGLVYYDAFALAMNEVLDEACRSLAIPKRITTLVRDIWQLQLRLSRRHGKRAWKLMEHPK 382 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 + L + + N+ + T + + +K + GDD Sbjct: 383 FRAAFDLLALRAEVENNHELQRLTTWWSEFQVSAPPQQKTMLNTLGDD 430 >gi|332673488|gb|AEE70305.1| poly(A) polymerase [Helicobacter pylori 83] Length = 407 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 167/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K K +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELQELFDIYEKSSYKLYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF A G K I Sbjct: 125 SPTKGIIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSATLGFK-IAPSTKRE 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK +S ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 IFACKYLLKHISKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTL 308 A E LR + + Q + P++ + C Sbjct: 238 KNAPFNLE------LRLLGFLKHQKS------LENLRYPKKTCVLFLKAKECYKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLTL-DFYALKNPKRALKIKTLLKEISNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L ++ Sbjct: 345 TLQNLGYQR-QQIGEILNACLSLVIAHPKNNSLEWLIKWVK 384 >gi|262183077|ref|ZP_06042498.1| tRNA nucleotidyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 477 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 88/447 (19%), Positives = 165/447 (36%), Gaps = 55/447 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ + +VGG+VRD+L+ D+D T PD V I + V T I + Sbjct: 29 LVERFALHDAPLYLVGGSVRDALLGRLGNDLDFTTPARPDVVYSILEEWAETVWDTGIDF 88 Query: 78 GTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA----DQQ 132 GT+ + + +ITT RSD R +V++ + D +RRDF +NA+ D Sbjct: 89 GTVSAAYKGQQIEITTFRSDSYDGQSRNPEVMYGDTLEGDLVRRDFKVNAMAIELRSDGT 148 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D +GGL+DL R + +D LR+LR RF A E ++ A I Sbjct: 149 REFHDPMGGLDDLAKRILDTPDAPEISFHDDPLRMLRAARFAAQL-EFDVAQRVRDAMID 207 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ------- 245 ++ ++ ER+ E+NKL+ P I + + GI +F ++ + + Sbjct: 208 MAGEIQRITVERVQVELNKLICGTAPWKGIDLLVDSGIADYVFPEIPALRMAPDEHAQHK 267 Query: 246 ------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------I 278 L+ + +A + E D +LR+ L+ K Sbjct: 268 DVYAHSLTVLRQAMEQEEEGPDLILRWAALLHDIGKPDTRDTTDGKVSFHHHEVVGAKLT 327 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKIFLAL 335 +K P+ + + + Y+ ++ +L + Sbjct: 328 RKRLRKLKFPKATTEDIGQLVYLHMRFHGFGDGQWTDSAVRRYVTDAGDLLPRLHKLVRA 387 Query: 336 HYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVGNI 384 + + + + + L G+++++ G+ PG +VG Sbjct: 388 DCTTRNERKARRLQRTYDQLEERIADIAAKEDLARVRPDLDGNEIMEILGLEPGPEVGKA 447 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKL 411 + K+ + L +E LR+ Sbjct: 448 WSYLKELRLEEG-PLEREVAIAKLREW 473 >gi|38234901|ref|NP_940668.1| putative tRNA nucleotidyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|38201166|emb|CAE50890.1| Putative tRNA nucleotidyltransferase [Corynebacterium diphtheriae] Length = 495 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 85/444 (19%), Positives = 162/444 (36%), Gaps = 55/444 (12%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + + +VGG+VRD+L++ D+D T P+ V I + V T I +GT Sbjct: 48 QAFHDRGHRLYLVGGSVRDALLDELGHDLDCTTDARPEVVSAILEEYAPVVWDTGIEFGT 107 Query: 80 IKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA----DQQGK 134 + + +ITT RSD+ R +V F + D +RRDFT+NA+ D + Sbjct: 108 VSAEKDGQQIEITTFRSDVYDGQSRNPEVQFGDTLEGDLIRRDFTVNAMAMEILPDGSMQ 167 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 D VGG+NDL + +D LR+LR RF + G ++ A + Sbjct: 168 FHDPVGGMNDLVAGLLDTPATPQQSFNDDPLRMLRAARFVSQLG-FDLAPRVRHAMTEMA 226 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ--------- 245 + +++ER+ E++K++ K P + I M + G+ I+ ++ + L Q Sbjct: 227 DQITRITAERVQVELDKMICGKVPWDGIDVMVDTGLADIIYPEISALRLTQDEHHQHKDV 286 Query: 246 ----LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA------------------- 282 L+ + +A E D +LR+ L+ K + Sbjct: 287 YAHSLTVLRQAMDQEEDGPDVVLRWAALMHDCGKPDTREFSPEGRVSFHQHEIVGARLMR 346 Query: 283 ---KKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKLKIFLALH 336 + + + + S E Y+ ++ +L + Sbjct: 347 HRMRALKYSKHTIRDVSELIRLHMRFHGFSEGEWTDSAVRRYVTDAGDLLPRLHKLVRAD 406 Query: 337 YNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 + + + + K L G+++++ I G +VG Sbjct: 407 CTTRNKKKAERLQKTYDHLEDRIADIAAKEDLAKVRPDLDGNEIMEILDIKAGPQVGQAW 466 Query: 386 VHCKQEWINSSFQLSQEDLHHLLR 409 K+ + ++ + L + Sbjct: 467 KFLKELRLERGPLEREDAILELKK 490 >gi|90023016|ref|YP_528843.1| poly(A) polymerase [Saccharophagus degradans 2-40] gi|89952616|gb|ABD82631.1| poly(A) polymerase [Saccharophagus degradans 2-40] Length = 443 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 19/243 (7%) Query: 6 QHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 H H S + L + ++ +VGG VRD L++ +D D+AT+ P++V ++F Sbjct: 28 SHDISHASY--KTIEQLQRAGYEAYLVGGGVRDLLLDADPKDFDVATSATPEQVRKVFRN 85 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWK 114 R + + + ++ ++TT R G + D K Sbjct: 86 ARI----IGKRFRIVHVRFGREIIEVTTFRGSHTDARSSRDASQSDTGVLLRDNVYGDIK 141 Query: 115 ADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 +D++RRDFTINALY + G+V+D+ GGL DL+NRTI+ IGD R ED +R+LR RF Sbjct: 142 SDAMRRDFTINALYYNPINGEVLDFCGGLKDLKNRTIRIIGDPEERYKEDPVRLLRAARF 201 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 G NID + L + S R++ E+ KL + + + + +FK Sbjct: 202 AGKLG-FNIDPVTEKPIREHADYLAHIPSARLFEEVLKLFMSGQATATLNKLRDYDLFKY 260 Query: 234 IFL 236 +F Sbjct: 261 LFP 263 >gi|15803598|ref|NP_289631.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 EDL933] gi|15833193|ref|NP_311966.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. Sakai] gi|168754024|ref|ZP_02779031.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4401] gi|168760215|ref|ZP_02785222.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4501] gi|168767077|ref|ZP_02792084.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4486] gi|168773289|ref|ZP_02798296.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4196] gi|168781930|ref|ZP_02806937.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4076] gi|168785928|ref|ZP_02810935.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC869] gi|168797645|ref|ZP_02822652.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC508] gi|195937200|ref|ZP_03082582.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. EC4024] gi|208808678|ref|ZP_03251015.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4206] gi|208814145|ref|ZP_03255474.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4045] gi|208820792|ref|ZP_03261112.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4042] gi|209396575|ref|YP_002272529.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4115] gi|217327265|ref|ZP_03443348.1| multifunctional CCA protein [Escherichia coli O157:H7 str. TW14588] gi|254795007|ref|YP_003079844.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. TW14359] gi|261228068|ref|ZP_05942349.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Escherichia coli O157:H7 str. FRIK2000] gi|261254924|ref|ZP_05947457.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Escherichia coli O157:H7 str. FRIK966] gi|73619767|sp|Q8XBL4|CCA_ECO57 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702048|sp|B5YR96|CCA_ECO5E RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|12517635|gb|AAG58190.1|AE005535_2 tRNA nucleotidyl transferase [Escherichia coli O157:H7 str. EDL933] gi|13363412|dbj|BAB37362.1| tRNA nucleotidyl transferase [Escherichia coli O157:H7 str. Sakai] gi|187770782|gb|EDU34626.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4196] gi|189000523|gb|EDU69509.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4076] gi|189358420|gb|EDU76839.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4401] gi|189363839|gb|EDU82258.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4486] gi|189369210|gb|EDU87626.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4501] gi|189374110|gb|EDU92526.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC869] gi|189379862|gb|EDU98278.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC508] gi|208728479|gb|EDZ78080.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4206] gi|208735422|gb|EDZ84109.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4045] gi|208740915|gb|EDZ88597.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4042] gi|209157975|gb|ACI35408.1| multifunctional CCA protein [Escherichia coli O157:H7 str. EC4115] gi|209759340|gb|ACI77982.1| tRNA nucleotidyl transferase [Escherichia coli] gi|209759342|gb|ACI77983.1| tRNA nucleotidyl transferase [Escherichia coli] gi|209759346|gb|ACI77985.1| tRNA nucleotidyl transferase [Escherichia coli] gi|217319632|gb|EEC28057.1| multifunctional CCA protein [Escherichia coli O157:H7 str. TW14588] gi|254594407|gb|ACT73768.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Escherichia coli O157:H7 str. TW14359] gi|320189407|gb|EFW64066.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320640129|gb|EFX09701.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O157:H7 str. G5101] gi|326337759|gb|EGD61593.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. 1125] gi|326347324|gb|EGD71049.1| tRNA nucleotidyltransferase [Escherichia coli O157:H7 str. 1044] Length = 412 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFTTL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|126438336|ref|YP_001074027.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] gi|126238136|gb|ABO01537.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS] Length = 489 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 89/459 (19%), Positives = 170/459 (37%), Gaps = 58/459 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L +I ++ + +VGG+VRD+L+ D+D T P+++ + T Sbjct: 29 LRDIGAVFAEAGHTLYLVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132 I +GT+ + +ITT R+D R V + + D +RRDFT+NA+ Sbjct: 89 IEFGTVGVGKAGHRMEITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITA 148 Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G+ D +GGL LR + + +D LR+LR RF + G + A Sbjct: 149 AGPGEFHDPLGGLAALRAKVLDTPSAPEVSFGDDPLRMLRAARFASQLG-FGVAPRVRTA 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLS 247 + L ++ ER+ +E++KLL +P+ I M G+ + +V +++D+ Sbjct: 208 MTEMAPQLARITVERVAAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRLAIDEHH 267 Query: 248 Q----------VIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------------ 279 Q V+ E D +LR+ L+ K + Sbjct: 268 QHKDVYWHSLTVLRQAIDLEDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGA 327 Query: 280 SMAKK----FSLPREIRYFL-------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 MA+K +++ + + F + + Y+ ++ + Sbjct: 328 KMARKRMRALKYSKQMVDDVSQLVFLHLRFHGYGDAKGPGKWTDSAVRRYVTDAGPLLDR 387 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPP 377 L + + + D+ ++ L G+++++ IP Sbjct: 388 LHKLVRADCTTRNKRRAARLQANYDDLERRIAELAAKEDLQRVRPDLDGNEIMRLLDIPA 447 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G +VG H K+ + E + LL+ A + Sbjct: 448 GPQVGEAWRHLKELRLERGPLSHDEAVDELLKWWNAEPR 486 >gi|284034912|ref|YP_003384843.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kribbella flavida DSM 17836] gi|283814205|gb|ADB36044.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kribbella flavida DSM 17836] Length = 475 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 156/447 (34%), Gaps = 58/447 (12%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + ++ + +VGG VRD L+ +D+D AT+ PD V R+ + V +GT Sbjct: 24 ARFDRAGHEIALVGGPVRDILLGRGSKDLDFATSARPDDVQRLLTGWADHVWDIGKDFGT 83 Query: 80 IKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALY-ADQQGKVID 137 I +ITT RS+ R +V + +AD RRDF +NA+ + +D Sbjct: 84 IGCRKGDWVLEITTYRSESYDPTSRKPEVAYGDTLEADLARRDFAMNAMAVLLPSHRFVD 143 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 GGL D+ N+ I+ G +D LR++R RF A D + A + + Sbjct: 144 PYGGLEDVANKAIRTPGSPEDSFSDDPLRMMRAARFAAQLA-FTPDPAVVAAMTAMAERI 202 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD------------- 244 I+S+ER+ E+ KL+ A P + + + G+ + ++ + L+ Sbjct: 203 TIVSAERVRDELVKLVCAPYPRIGLDLLVSTGLADHVLPELPALRLELDEHHRHKDVYQH 262 Query: 245 ---QLSQVIEAEQVFEWK---IDSLLRFIVLISWQDKKSILSMA---------------- 282 L Q I+ E + D ++RF LI K Sbjct: 263 SLTVLDQAIDLEPRLGEEVELPDFVVRFAALIHDIGKPRTRKFEGDGKVTFHHHDVVGAK 322 Query: 283 ------KKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKLKIFL 333 K E + + E Y+ ++ +L + Sbjct: 323 LARKRMKALRFSNEQIDQVGKLVELHLRFHGYGTGEWTDSAVRRYVRDAGPLLTRLHVLT 382 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVG 382 + + D+ L G+ +++ GI PG+KVG Sbjct: 383 RADSTTRNRRKADALRAAYDDLEQRIARLQEQEELDAMRPDLDGNQIMEILGIGPGRKVG 442 Query: 383 NILVHCKQEWINSSFQLSQEDLHHLLR 409 + ++ Q LL Sbjct: 443 EAYKFLMELRMDQGPLGEQRARAELLD 469 >gi|90416970|ref|ZP_01224899.1| poly(A) polymerase [marine gamma proteobacterium HTCC2207] gi|90331317|gb|EAS46561.1| poly(A) polymerase [marine gamma proteobacterium HTCC2207] Length = 453 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 17/246 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + D ++ +L K ++ +VGG VRD L+ L +D D+AT+ P V +F ++R Sbjct: 37 NRDAFKVVDVLQKAGFEAYVVGGCVRDLLIGLKPKDFDVATSAKPWEVKELFRRSRI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-----------TDGRYAKVVFTRDWKADSLRR 120 + + + ++ ++TT RS+ G + + D+ RR Sbjct: 94 -IGRRFQIVHVQFSREIIEVTTFRSNSSQSTSKNRRQQTDSGMLTRDNVFGTVEEDASRR 152 Query: 121 DFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 D T+NALY D + D+ G++D+ + I+ IGD R ED +R+LR RF A G Sbjct: 153 DLTVNALYYDPSTNSIHDFTNGIDDVDAKIIRIIGDPETRFREDPVRLLRVARFAAKLG- 211 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 NI+ L+ +S R++ E KL + L+ + +F I + Sbjct: 212 FNIEPATANPMKHRAADLQQVSPPRLFDETLKLFMSGQGLDTFKILVEHRLFDYIVPQLG 271 Query: 240 EISLDQ 245 + D+ Sbjct: 272 PMLNDR 277 >gi|46204034|ref|ZP_00050593.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Magnetospirillum magnetotacticum MS-1] Length = 311 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 107/283 (37%), Positives = 157/283 (55%), Gaps = 7/283 (2%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L +++ +VGG VRD+L+ V DID+ TT+ P+ VM K +PT +++G Sbjct: 28 LAALRVEGEETRLVGGCVRDALLGQIVSDIDLTTTLRPEAVMDRARAAGIKAVPTGVAHG 87 Query: 79 TIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 T+ ++ ++TTLR D+ TDGR+A V F RD+ D+ RRDFTINAL D QG + D Sbjct: 88 TVTLVVDGVPHEVTTLREDVETDGRHAVVRFGRDFARDAERRDFTINALSLDGQGGLHDT 147 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GG+ DL ++FIGDA RI ED LR+LRFFRF A YG D++GL A+I A+ GL Sbjct: 148 TGGVADLAAGRVRFIGDAATRIREDALRLLRFFRFHARYGRGAPDAEGLAAAIAARDGLD 207 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ER+ +E KLL A + A+ + G+ I V E+ +L++ AE Sbjct: 208 RLSRERVRAEFLKLLLAPRVVAAVTILSETGLLPRIVGGVGELG--RLARCAAAE----P 261 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 ++DS +R L + + + + L R L + Sbjct: 262 RLDSTVRLAAL-AVRTVEDADRLQANLRLSRAEHAQLSGYAAA 303 >gi|82545310|ref|YP_409257.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella boydii Sb227] gi|187731005|ref|YP_001881819.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella boydii CDC 3083-94] gi|193062212|ref|ZP_03043308.1| multifunctional CCA protein [Escherichia coli E22] gi|193067390|ref|ZP_03048358.1| multifunctional CCA protein [Escherichia coli E110019] gi|194426481|ref|ZP_03059036.1| multifunctional CCA protein [Escherichia coli B171] gi|218555626|ref|YP_002388539.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli IAI1] gi|256019028|ref|ZP_05432893.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella sp. D9] gi|260845810|ref|YP_003223588.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O103:H2 str. 12009] gi|293449394|ref|ZP_06663815.1| multifunctional CCA protein [Escherichia coli B088] gi|300818821|ref|ZP_07099027.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 107-1] gi|300821649|ref|ZP_07101795.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 119-7] gi|331679132|ref|ZP_08379804.1| multifunctional CCA protein [Escherichia coli H591] gi|332280128|ref|ZP_08392541.1| tRNA nucleotidyl transferase [Shigella sp. D9] gi|123558762|sp|Q31WX9|CCA_SHIBS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702050|sp|B7LZK6|CCA_ECO8A RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702086|sp|B2U1G0|CCA_SHIB3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|81246721|gb|ABB67429.1| tRNA nucleotidyl transferase [Shigella boydii Sb227] gi|187427997|gb|ACD07271.1| multifunctional CCA protein [Shigella boydii CDC 3083-94] gi|192932432|gb|EDV85030.1| multifunctional CCA protein [Escherichia coli E22] gi|192959347|gb|EDV89782.1| multifunctional CCA protein [Escherichia coli E110019] gi|194415789|gb|EDX32056.1| multifunctional CCA protein [Escherichia coli B171] gi|218362394|emb|CAR00018.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli IAI1] gi|257760957|dbj|BAI32454.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O103:H2 str. 12009] gi|291322484|gb|EFE61913.1| multifunctional CCA protein [Escherichia coli B088] gi|300525787|gb|EFK46856.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 119-7] gi|300528606|gb|EFK49668.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 107-1] gi|320174938|gb|EFW50055.1| tRNA nucleotidyltransferase [Shigella dysenteriae CDC 74-1112] gi|320179303|gb|EFW54261.1| tRNA nucleotidyltransferase [Shigella boydii ATCC 9905] gi|320187121|gb|EFW61824.1| tRNA nucleotidyltransferase [Shigella flexneri CDC 796-83] gi|323163106|gb|EFZ48939.1| poly A polymerase head domain protein [Escherichia coli E128010] gi|323173699|gb|EFZ59328.1| poly A polymerase head domain protein [Escherichia coli LT-68] gi|323183639|gb|EFZ69036.1| poly A polymerase head domain protein [Escherichia coli 1357] gi|324119664|gb|EGC13545.1| poly A polymerase head domain-containing protein [Escherichia coli E1167] gi|331073197|gb|EGI44520.1| multifunctional CCA protein [Escherichia coli H591] gi|332086714|gb|EGI91854.1| poly A polymerase head domain protein [Shigella boydii 5216-82] gi|332091836|gb|EGI96914.1| poly A polymerase head domain protein [Shigella boydii 3594-74] gi|332102480|gb|EGJ05826.1| tRNA nucleotidyl transferase [Shigella sp. D9] Length = 412 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|218550309|ref|YP_002384100.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia fergusonii ATCC 35469] gi|226702065|sp|B7LQD4|CCA_ESCF3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|218357850|emb|CAQ90494.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia fergusonii ATCC 35469] Length = 412 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 147/348 (42%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDDGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP +++ G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLHDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLAKLVAEFHDLIHTFPMLNPKT 318 >gi|3650360|emb|CAA77045.1| polynucleotide adenylyltransferase [Pseudomonas putida] Length = 463 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 20/248 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 42 SRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI--- 98 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ D GR + + D+ Sbjct: 99 -IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQ 157 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 158 RRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKL 217 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I+ + L+ + R++ E KL + A + + +F+ +F Sbjct: 218 -DFGIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP- 275 Query: 238 VQEISLDQ 245 +LD+ Sbjct: 276 ASAHALDE 283 >gi|332293599|ref|YP_004432208.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Krokinobacter diaphorus 4H-3-7-5] gi|332171685|gb|AEE20940.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Krokinobacter diaphorus 4H-3-7-5] Length = 471 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 85/457 (18%), Positives = 178/457 (38%), Gaps = 73/457 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLM--NLSVQDIDIATTILPDRVMRIFSK--TRY 68 S+ + L L ++ ++GG VRD L+ N V+DID+ + R S+ Sbjct: 16 SNAADALEL------ETYVIGGFVRDYLLKRNKEVKDIDVVAVGSGIALARKVSQILPNK 69 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + +YGT + + R + VV + D RRDFTINAL Sbjct: 70 PKVQVFKTYGTAMLRSGNMDIEFVGARKESYATESRNPVVEDGTLEDDQNRRDFTINALA 129 Query: 129 A----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 + G VID G++DL + I+ D +D LR++R RF + + I+ Sbjct: 130 IKLNDNGYGDVIDPFNGISDLERKIIRTPLDPDITYSDDPLRMMRAIRFASQL-DFMIER 188 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SL 243 L + K + +KI+++ERI E+NK++ + P + + G+ I ++ + + Sbjct: 189 TSLESITKNAERIKIITNERIVDELNKIMLSPTPSKGFLLLEKTGLLPYILPELMALKGI 248 Query: 244 DQLSQVIEAEQVFE----------WKIDSLLRFIVLISWQDK------------------ 275 D++ + + D LR+ L+ K Sbjct: 249 DEIEGQKHKDNFYHTLEVVDNISEHTDDLWLRWAALLHDIGKAPTKKFSKKVGWTFHGHE 308 Query: 276 ----KSILSMAKKFSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 K + + K+ +P + L+S ++ ++ +++L + GD + Sbjct: 309 FVGSKMVYKLFKRLKMPLNDKMKFVQKMVLMSSRPIVISEDHVTDSAVRRLIFDAGDHI- 367 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK 372 + + L ++T ++ + + + H + P++G+++++ Sbjct: 368 ----EDLMTLCEADITTKNPKRFKRYHNNFKVVREKMKEVEERDHVRNFQPPVSGEEIME 423 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + + PG+++G + K+ + +E + Sbjct: 424 AFNLKPGREIGILKEAIKEAILEGEIPNEKEAAIAFM 460 >gi|152979389|ref|YP_001345018.1| poly(A) polymerase [Actinobacillus succinogenes 130Z] gi|150841112|gb|ABR75083.1| poly(A) polymerase [Actinobacillus succinogenes 130Z] Length = 421 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 79/383 (20%), Positives = 152/383 (39%), Gaps = 36/383 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + + ++ LN+ ++ IVGG +RD L+ +D D+AT P+++ +F + R Sbjct: 3 SKNALTVVEKLNRNGYEAYIVGGCLRDLLLGKKPKDFDVATNARPEQIQTVFQRQCRL-- 60 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLR 119 + ++ + ++ T R+ DG + + D+ R Sbjct: 61 --VGRRFRLAHVMFGRDVIEVATFRAHHAESKNENQARRNEDGMLLRDNVYGTLEQDAER 118 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 119 RDFTVNALYYNPKDNTIHDYYHGIEDLKAGKLRLIGDPATRYQEDPVRMLRSIRFMAKLD 178 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +D K LK + R++ E KLL+A L M G+F ++F + Sbjct: 179 MF-LDKPSEEPIRKLAPLLKNIPPARLFDESLKLLQAGAGLKTYRLMCEYGLFDQLFPAL 237 Query: 239 QEISLDQLSQVIEA--EQVF---------EWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+ + +I+ F + ++ + + + L Sbjct: 238 MPYFTEKNDSFAERMIEKALTSTDERIADKLRINPAFLFAAFFWYPLREKVEMLKNEGGL 297 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE-----IKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 Y L + L+IP I+ +++L ++ + F A N+ Sbjct: 298 NNHDAYALATNEMLEQCCSALAIPRRHTSVIRDIWFL--QLQLMKRAGRFPATTMNHPKF 355 Query: 343 QDTCFILQVLSDIIHWKKPLFPL 365 + +L + ++I + + Sbjct: 356 RAAYDLLAMRAEIEGGEAIELAI 378 >gi|157155570|ref|YP_001464516.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli E24377A] gi|191168809|ref|ZP_03030584.1| multifunctional CCA protein [Escherichia coli B7A] gi|218696761|ref|YP_002404428.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 55989] gi|300923716|ref|ZP_07139742.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 182-1] gi|301325594|ref|ZP_07219060.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 78-1] gi|307310319|ref|ZP_07589967.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli W] gi|309793620|ref|ZP_07688046.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 145-7] gi|331669920|ref|ZP_08370765.1| multifunctional CCA protein [Escherichia coli TA271] gi|167006455|sp|A7ZRT7|CCA_ECO24 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|254813692|sp|B7LGZ2|CCA_ECO55 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157077600|gb|ABV17308.1| multifunctional CCA protein [Escherichia coli E24377A] gi|190901138|gb|EDV60912.1| multifunctional CCA protein [Escherichia coli B7A] gi|218353493|emb|CAU99605.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli 55989] gi|300420030|gb|EFK03341.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 182-1] gi|300847566|gb|EFK75326.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 78-1] gi|306909214|gb|EFN39709.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli W] gi|308122577|gb|EFO59839.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 145-7] gi|315062364|gb|ADT76691.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli W] gi|323377048|gb|ADX49316.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli KO11] gi|323946764|gb|EGB42783.1| poly A polymerase head domain-containing protein [Escherichia coli H120] gi|331062833|gb|EGI34747.1| multifunctional CCA protein [Escherichia coli TA271] Length = 412 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|292491190|ref|YP_003526629.1| poly(A) polymerase [Nitrosococcus halophilus Nc4] gi|291579785|gb|ADE14242.1| poly(A) polymerase [Nitrosococcus halophilus Nc4] Length = 402 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 71/380 (18%), Positives = 135/380 (35%), Gaps = 40/380 (10%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L L K + +VGG VRD L+ +D D+ T P+++ +F R + Sbjct: 2 LYRLKKAGFSAYLVGGCVRDLLLGHEPKDFDVTTDARPEQIRDLFRSCRL----VGRRFR 57 Query: 79 TIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133 + + ++ T R L +GR + D+ RRDF++NALY + Sbjct: 58 LAHVRFGRDIIEVATFRGPPGKGLSENGRIVSDNVYGTLEQDAWRRDFSVNALYYNIRDF 117 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 V+DY GG+ DL+ ++ IGD R ED +R+LR RF A G + Sbjct: 118 SVVDYTGGMEDLKAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLG-FTFHPESEKPIWDL 176 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA- 252 L+ + S R++ E+ KL + + + +F+ +F + ++ Sbjct: 177 APSLQEIPSARLFEEVLKLFLGGCAVQTFELLRHFHLFQWLFPQTEACLAEEEKGFPRTF 236 Query: 253 ---------EQVFEWKIDSLLRFIVLISWQDKKSILSM--------AKKFSLPREI---- 291 ++ E K + + W+ + + A+ E+ Sbjct: 237 LVQALSNTDTRIEEGKPVTPAFLFAALLWEPTRKLTERYQQEGIPGAQAMRKAAEVVLAN 296 Query: 292 --------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 R F + + Q + K+ L A L + + Sbjct: 297 QAVHVALPRRFSLPMREIWYLQPRFAYRRGKRPLRLLQHPRFRAAYDFLLLRAQSGEELE 356 Query: 344 DTCFILQVLSDIIHWKKPLF 363 + C + ++ ++ + Sbjct: 357 ELCQWWTKIQEMGEKERLRY 376 >gi|322834354|ref|YP_004214381.1| poly(A) polymerase [Rahnella sp. Y9602] gi|321169555|gb|ADW75254.1| poly(A) polymerase [Rahnella sp. Y9602] Length = 568 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 20/256 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L++ +D DI T PD+V ++F R Sbjct: 144 SENALKVLYRLNKSGFEAFLVGGGVRDLLLDKKPKDFDITTNATPDQVRKLFRNCRL--- 200 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADS 117 + ++ + ++ T R G + + D+ Sbjct: 201 -VGRRFRLAHVMFGPEIIEVATFRGHHEQHEETEDKNVSQQAVNGMLLRDNIFGTIEDDA 259 Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTIN+LY V DY GGL DL N I+ IGD R ED +R+LR RF A Sbjct: 260 QRRDFTINSLYYGVADFTVRDYTGGLRDLENGIIRLIGDPETRYREDPVRMLRAVRFAAK 319 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I + + L+ + R++ E KLL+A + +F+ +F Sbjct: 320 L-DMKISPETAEPIPRLATLLQEIPPARLFEESLKLLQAGYGYETYKKLCEYQLFQPLFP 378 Query: 237 DVQEISLDQLSQVIEA 252 + +Q +E Sbjct: 379 LIARQFTEQGDSPMEH 394 >gi|78485869|ref|YP_391794.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2] gi|78364155|gb|ABB42120.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2] Length = 484 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 80/364 (21%), Positives = 142/364 (39%), Gaps = 49/364 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + +++L L + + +VGG VRD L+ L +D D+ T P+++ +F K+R ++I Sbjct: 45 DKEALDVLYGLKRAGYDAYLVGGGVRDILLGLEPKDFDVVTNAEPEQIKGVF-KSRCRLI 103 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-------------------LITDGRYAKVVFTRD 112 + + + ++ T R D + GR + Sbjct: 104 --GRRFRLAHVYFGRNVVEVATFRGDGDGQKSAGRSRKQVNHTRAVDDTGRLVRDNVYGS 161 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D RRDFTIN+LY + V+DY GG+ D+ ++ IGD R ED +R++R Sbjct: 162 IEEDVWRRDFTINSLYYNIRDFSVLDYTGGMEDIEKGQLRLIGDPEMRYREDPVRMIRAI 221 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A G I+ + + LK +S R++ E+ KL + + + + G+F Sbjct: 222 RFAAKLG-FEIEPNTKAPIYELAHLLKDVSHARMFEEVLKLFHSGVAIEVFEKLRHFGLF 280 Query: 232 KEIFLDVQEIS------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL 279 +F + ++ L Q + S L +L W+ + Sbjct: 281 TFLFPQTHHLLSMESEGFPRMLVIEALKSTDARIQSNKGVNPSFLFAAML--WEPMLQRM 338 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 R+ F + + SIP K A++K +L + Sbjct: 339 EQHLAEDFSRQDAMFAAANDVIEQQIYSTSIP-----------KRFTAQIKDIWSLQFRL 387 Query: 340 LTHQ 343 L Q Sbjct: 388 LNRQ 391 >gi|320095130|ref|ZP_08026839.1| polyA polymerase family protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977997|gb|EFW09631.1| polyA polymerase family protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 532 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 86/461 (18%), Positives = 167/461 (36%), Gaps = 63/461 (13%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ + ++ ++ +VGG VRD+ + ++ D D+ T+ P R + + V Sbjct: 39 AAIMELGTVFESAGEEIALVGGPVRDAFLGVAPHDFDLTTSARPGRTEELLGQWGNAVWD 98 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD- 130 +GTI ++TT R+D G R +V F + D RRDFT+NA+ Sbjct: 99 IGKEFGTIGARRGDVVVEVTTYRADSYQIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRL 158 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + ++D GGL DL ++ A +D LRI+R RF A G ++D D + A Sbjct: 159 PRMALVDPCGGLADLAAGNLRTPVSAEQSFDDDPLRIMRAARFSAQLG-MDVDLDVMNAM 217 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------- 241 L I+S+ERI +E+ +L+ + +P I + + G+ + +V ++ Sbjct: 218 EDMAHRLGIVSAERIRTELERLIVSPHPRRGIELLVHTGVASIVLPEVADLVSTVDEHRR 277 Query: 242 -------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMA--------- 282 +L + Q ++ E + D +LRF L+ K + Sbjct: 278 HKDVYEHTLTVVEQAMDLETGPDGPVPAPDFILRFAALMHDVGKPATRRFEPNGAVTFHH 337 Query: 283 -------------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKV 324 + + + + + +++ G++ Sbjct: 338 HEVVGAKLTRKRMRALHFDNATTDAVCQLVALHLRFHGYGESAWTDSAVRRYVSDAGEQ- 396 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-Y 373 + +L + + D+ L GD +++ Sbjct: 397 -LERLHRLTRADCTTRNRRKANRLSAAYDDLEERISTLREREELDAIRPDLDGDQIMEIL 455 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 G+ P + V H + + L E L + AS Sbjct: 456 GLRPSRAVKMARDHLLELRMEHG-PLGPEAAREALERWWAS 495 >gi|120436629|ref|YP_862315.1| tRNA nucleotidyltransferase [Gramella forsetii KT0803] gi|117578779|emb|CAL67248.1| tRNA nucleotidyltransferase [Gramella forsetii KT0803] Length = 477 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 87/459 (18%), Positives = 178/459 (38%), Gaps = 71/459 (15%) Query: 17 NILSLLNKGEDK----SCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSK--TRYK 69 I +++++ + + ++GG VRD ++ +DIDI + + S+ Sbjct: 14 KIFNVISEAAEDLSVDAYVIGGFVRDHILERGEPKDIDIVAVGSGIELAKKVSEKLPNKP 73 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + ++GT + + R + +V + D RRDFTINAL Sbjct: 74 KVQVFKNFGTAMLRSEDMEIEFVGARKESYRKDSRKPIVEDGTLEDDQNRRDFTINALAL 133 Query: 130 ----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 D G ++D G +DL+ + IK D +D LR+ R RF + I+++ Sbjct: 134 KLNKDGFGDLLDPFNGYDDLKKKIIKTPLDPDITYSDDPLRMYRAIRFASQLN-FMIEAE 192 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLD 244 L A + +KI+S ERI E+NK++ + P +Y G+ K+I ++ + +D Sbjct: 193 SLKAIKANNERIKIISKERIVDELNKIMLSDKPSKGFALLYKTGLLKKIIPELTALAGID 252 Query: 245 QLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDK------------------- 275 ++ + + D LR+ L+ K Sbjct: 253 EVEGQTHKDNFWHTLEVVDNISENTDDLWLRWAALLHDIGKAPTKKFHKKIGWTFHGHEF 312 Query: 276 ---KSILSMAKKFSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 K + + K+ LP + L+S ++ +++L + GD + Sbjct: 313 VGAKMVYKLFKRLRLPLNEKMKFVQKMVLMSSRPIAIADDHVTDSAVRRLIFDAGDNI-- 370 Query: 327 AKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK- 372 + + L ++T ++ + + + H + P++G+++++ Sbjct: 371 ---EDLMTLCEADITTKNPKRFKKYHNNFKLVRQKIQEVEERDHVRNFQPPVSGEEIMQT 427 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQE-DLHHLLRK 410 +GI P ++VG I K+ + + E +L+K Sbjct: 428 FGIKPSREVGLIKDAIKEAILEGNIPNEYEAAREFMLKK 466 >gi|69250632|ref|ZP_00605176.1| Polynucleotide adenylyltransferase [Enterococcus faecium DO] gi|68193917|gb|EAN08494.1| Polynucleotide adenylyltransferase [Enterococcus faecium DO] Length = 249 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 7/216 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I +L L ++ VGG+VRD L+N + D+DIAT+ P+ + ++F KT I Sbjct: 13 AIPVLKKLENAGYEAYFVGGSVRDILLNQPIHDVDIATSAFPEEIKQLFPKT----IDIG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ ++ + ++ITT R++ D R V F R D RRDFTINA + Sbjct: 69 IEHGTVLVLENDEQYEITTFRTESTYQDYRRPDHVEFVRSLSEDLKRRDFTINAFALKED 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G++ID GL DL + ++ +G+ H R ED LR++R RF + G K ++ + A + Sbjct: 129 GEIIDLFDGLQDLEEQILRAVGNPHERFHEDALRMMRGLRFVSQLGFK-LEEETFYAIKE 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 + L +S ERI E K+L I Sbjct: 188 NHELLGKISVERINVEFIKMLLGNERAAGIHAFIET 223 >gi|317177458|dbj|BAJ55247.1| poly(A) polymerase [Helicobacter pylori F16] Length = 407 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 170/401 (42%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD L+ ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFDIYEKSPYELYLVGGCVRDCLIGITPKDYDLTSNALVNESKDLLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIKNQVIECVGEARLRFFEDALRILRALRFSATLGFKIVLS-TKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ +E+NKLL KN ++EI V + ++ L + Sbjct: 184 IFACKDLLKHLSKERLQNELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-NFNQKTL 308 A E LR + Q + P++ + C T Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECYKAFLNTH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKCALKIKSLLKEISNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L ++ Sbjct: 345 TLQNLGYQC-QQIGEILNACLNLVIAHPKNNSLEWLIKWVK 384 >gi|301063768|ref|ZP_07204272.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2] gi|300442123|gb|EFK06384.1| putative tRNA adenylyltransferase [delta proteobacterium NaphS2] Length = 437 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 92/433 (21%), Positives = 157/433 (36%), Gaps = 59/433 (13%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK-TRYKVIPTSIS 76 ++ L +VGGAVRD + V D D+ T+ D ++ IF +R+ Sbjct: 16 LIRKLEGANHLVYVVGGAVRDICLKRPVTDWDLCTSASVDALLEIFRNESRFSP-----G 70 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKV 135 +GT+ I+ ++ITT R T +D +RD TINA+ D G++ Sbjct: 71 HGTMVIVMEGHSYEITTFRGAAKT------------LASDLSKRDLTINAMALDPSTGEI 118 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G DL+NR ++ + + R ED LR+LR R A + I A + Sbjct: 119 IDPHHGRRDLQNRILRAVINPEDRFREDPLRLLRTVRLAAQL-DFAIHQKTKEAIPALAR 177 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE---- 251 L ++ ERI E+ K+L P + G+ KE ++ E L + ++ Sbjct: 178 LLSGVARERIREELMKILMVPKPSKDFNTLITLGLLKEFLPELLEGRLKRQNRYHRFTIL 237 Query: 252 ---AEQVFEWKIDSLLRFIVLISWQDKKSI---------------------LSMAKKFSL 287 E V K +LR L+ K + + K+ Sbjct: 238 KHVLETVDNVKATPVLRLTALLHDVAKPRVRVKEKGTWRFKGHEKASAKLGEKIMKRLKF 297 Query: 288 PREIRYFLISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 +++ + + + +++ G M L A + Sbjct: 298 SKQMIAEVTHLIRSHLIGYNPRWTDAAVRRFIKRVGADHMENLLAFRRADILAHGIQNGN 357 Query: 346 CFILQVLSDIIH--------WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSS 396 IL L I ++ + G+D++ G+ PG VG IL + Sbjct: 358 QDILFELDQRIQQQLASSPPIQRSDLAIDGNDIMSVTGLSPGPAVGRILNQLNSIVLEHP 417 Query: 397 FQLSQEDLHHLLR 409 +E L +L+ Sbjct: 418 QWNQKEKLMEILK 430 >gi|77359558|ref|YP_339133.1| poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125] gi|76874469|emb|CAI85690.1| poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125] Length = 432 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 84/414 (20%), Positives = 152/414 (36%), Gaps = 47/414 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K F + I +L L G + +VGG +RD L+ +D D+ T P++V ++F Sbjct: 9 ISRKQFS-PNAIKVLYRLKDGGFDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFR 67 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD------------LITDGRYAKVVFTRD 112 R + I+ ++ ++ T+R G+ + Sbjct: 68 NCRL----IGRRFRLAHIVFGREIIEVATMRGHHEAPEDKNQISQSSEQGQLLRDNVFGS 123 Query: 113 WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 + D+ RRDF+INALY + DY GL ++ + I+ IGD R ED +R+LR Sbjct: 124 IEEDAERRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRAV 183 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF + I + L + R++ EI KL + + G+F Sbjct: 184 RFATKL-DMKIAPNSEKPMTALASLLDNIPPARLFEEILKLFLNGKAQANYLMLRKYGLF 242 Query: 232 KEIFLDVQEISLDQLSQVIEA---EQVF---------EWKIDSLLRFIVLISWQDKKSIL 279 +F ++ I LD +EA E +F + K+ F L+ + + Sbjct: 243 NSLFPELNRI-LDNNPGGLEATFIENMFKNTDDRINADKKVTPAYVFAALLWFPLLERTK 301 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIA 327 ++ + L + + N + +++P+ +L G + Sbjct: 302 TVQNEEQLSEYDAFSQAINSVLSDNAQHIAVPKRFTLGARDIWHIQHRLDKRAGQRAYRL 361 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL-FPLTG--DDVVKYGIPPG 378 + Y+ L + Q W + L + G + V G P G Sbjct: 362 TQQPRFKAAYDFLLMRVEAGETQHSELAQWWTQYLSLDINGQKEMVRTLGQPAG 415 >gi|300742670|ref|ZP_07072691.1| tRNA adenylyltransferase [Rothia dentocariosa M567] gi|300381855|gb|EFJ78417.1| tRNA adenylyltransferase [Rothia dentocariosa M567] Length = 474 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 91/441 (20%), Positives = 152/441 (34%), Gaps = 66/441 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV--QDIDIATTILPDRVMRIFSKTRYKV 70 D + + L + +VGG VRD L N D D+ T P + RI S + Sbjct: 12 PDAVELGELYRQAGFDLYLVGGLVRDELRNTPGEFTDFDMTTNATPAQSERILSAWGEHI 71 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 YGTI +++TT R+++ D R V F D KAD +RRDFTINA+ A Sbjct: 72 WDIGKEYGTISARKNGAVYEVTTYRAEVYVADSRKPTVEFGTDLKADLIRRDFTINAMAA 131 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+++D G DL ++ ED LR++R RF A + + + Sbjct: 132 ALPSGEIVDLFHGTKDLAEGVLRTPRSPQESFSEDPLRMMRAARFAARFN-LTVAPEVFE 190 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241 A + ++I+S+ER+ E+ KL+ A P + + G+ + ++ + Sbjct: 191 AMRQMAPRIEIISAERVRDELIKLICADYPRVGLNLLVETGLADYVLPELPALRMEMDPS 250 Query: 242 ---------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMAK------ 283 SL + Q IE E + D +LRF L+ K K Sbjct: 251 HHHKDVYEHSLKVMEQAIEKETDADGPCPTPDFVLRFASLLHDIGKPKTRRFEKDGSVSF 310 Query: 284 ----------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------P 311 + + + Sbjct: 311 LQHDVVGARMVKKRMRALRFDNDTIKAVARLVELHMRFYGYREAGWTDSAVRRYVRDAGE 370 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++++L L V ++ +L + L ++ + L G+ ++ Sbjct: 371 QLQRLHRLSRSDVTTRNKRMARSLAQAYDDLERRIDELAAQEELDAMRPE---LDGEQIM 427 Query: 372 K-YGIPPGKKVGNILVHCKQE 391 GI PG VG Sbjct: 428 AVLGIDPGPLVGQAYKFLLNL 448 >gi|307256202|ref|ZP_07537989.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865383|gb|EFM97279.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 510 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 152/423 (35%), Gaps = 53/423 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 142 -IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRR 200 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 201 DFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDM 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + LK + + R++ E KL ++ M G+F+++F + Sbjct: 261 F-LDKASDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLT 319 Query: 240 EISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ E +++ F L+ + ++ + + + L Sbjct: 320 PFFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 379 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + N + L + + F + Q T Sbjct: 380 SHDAMMLAA------NDVLAESCKAIALHRRHTSVIRDIWALQFQMAKRSGKRPQQTLEH 433 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHH 406 ++ + + G D+V W F + ++ Sbjct: 434 VKFRAGFDLL-VMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEMLK 477 Query: 407 LLR 409 +R Sbjct: 478 AVR 480 >gi|94500957|ref|ZP_01307482.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oceanobacter sp. RED65] gi|94426897|gb|EAT11880.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oceanobacter sp. RED65] Length = 445 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 17/246 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L K ++ +VGG VRD L+ L +D D+ T P+ V ++F +R Sbjct: 36 SENALKVLYRLKKSGYEAHLVGGGVRDLLLGLHPKDFDVVTDASPEEVHKLFKNSRI--- 92 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + + + + ++ T R D G + D++RR Sbjct: 93 -IGRRFRLVHVTFGRDMIEVATFRGDHGNAEGKHQSKTNEAGMLLRDNVYGSIDEDAMRR 151 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTINALY + V Y GG++D+ + ++ IGD R ED +R+LR RF A G Sbjct: 152 DFTINALYYNIADFSVKSYAGGIDDIHAKRLRLIGDPETRYREDPVRMLRAARFAAKLG- 210 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +ID + L+ + R++ E+ KL A + G+F+ +F Q Sbjct: 211 FSIDKSSKAPIKELAPLLRDIPPARLFEEVLKLFMAGYAKATFEQLQALGLFEPLFPHTQ 270 Query: 240 EISLDQ 245 + D Sbjct: 271 QCIDDN 276 >gi|222034788|emb|CAP77530.1| Multifunctional CCA protein [Escherichia coli LF82] gi|312947627|gb|ADR28454.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O83:H1 str. NRG 857C] Length = 412 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDNNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|71279421|ref|YP_270960.1| polyA polymerase [Colwellia psychrerythraea 34H] gi|71145161|gb|AAZ25634.1| polyA polymerase [Colwellia psychrerythraea 34H] Length = 474 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 82/399 (20%), Positives = 147/399 (36%), Gaps = 47/399 (11%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + +L LNKG + +VGG VRD L+ +D DIAT PD + +F R Sbjct: 46 LLSPNALKVLYRLNKGGFDAYLVGGGVRDILLGFKPKDFDIATNATPDEIKELFRNCRL- 104 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDL----------------ITDGRYAKVVFTRDW 113 + I+ ++ ++ T R DG + Sbjct: 105 ---IGRRFRLAHIVFGREIIEVATFRGHHDNASEQEKSCKKTSKQSEDGMLLRDNIYGSI 161 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFTINALY KV D+ G+ D+ ++ I+ IGD R ED +R+LR R Sbjct: 162 EEDAERRDFTINALYYSAKDFKVYDFANGVQDVNDKVIRLIGDPETRYREDPVRMLRAIR 221 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + I D + + + + R++ E K+ A + + + +F Sbjct: 222 FATKL-DMQISDDTKAPIKELSTLMANIPAARLFEEFLKMFIAGKAVANFEQLRSYNLFG 280 Query: 233 EIFLDVQEISLDQLSQ--------VIEAEQV-----FEWKIDSLLRFIVLISWQDKKSIL 279 F V++ D+ Q ++ E + ++ F ++ + +K I Sbjct: 281 YFFPAVEQALNDESDQQRFLLDFIMLAMENTDKRINNDQRVTPAFLFAAMLWYPLQKHIQ 340 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIA 327 + L + +F Q++++IP+ KL G + Sbjct: 341 QIKVTTQLTPQDIFFAALNEIMPEQQRSIAIPKRFQAVIKDIWILQDKLGRREGKRAFKT 400 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 Y+ L + L ++ HW ++ Sbjct: 401 IEHPKFRAGYDFLLLRAQIEDTDELKELAHWWTDFQEVS 439 >gi|307244988|ref|ZP_07527085.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253941|ref|ZP_07535793.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258396|ref|ZP_07540137.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854153|gb|EFM86361.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863145|gb|EFM95087.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867580|gb|EFM99427.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 510 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 152/423 (35%), Gaps = 53/423 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 142 -IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRR 200 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 201 DFSVNSLYYDPKHNLIFDFFDGITDLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDM 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + LK + + R++ E KL ++ M G+F+++F + Sbjct: 261 F-LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLT 319 Query: 240 EISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ E +++ F L+ + ++ + + + L Sbjct: 320 PFFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 379 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + N + L + + F + Q T Sbjct: 380 SHDAMMLAA------NDVLAESCKAIALHRRHTSVIRDIWALQFQMAKRSGKRPQQTLEH 433 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHH 406 ++ + + G D+V W F + ++ Sbjct: 434 VKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEMLK 477 Query: 407 LLR 409 +R Sbjct: 478 AVR 480 >gi|91212484|ref|YP_542470.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli UTI89] gi|117625369|ref|YP_855260.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli APEC O1] gi|218560143|ref|YP_002393056.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli S88] gi|237706183|ref|ZP_04536664.1| tRNA nucleotidyl transferase [Escherichia sp. 3_2_53FAA] gi|331659345|ref|ZP_08360287.1| multifunctional CCA protein [Escherichia coli TA206] gi|122422381|sp|Q1R6S5|CCA_ECOUT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233852|sp|A1AFX8|CCA_ECOK1 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702047|sp|B7MAD3|CCA_ECO45 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|91074058|gb|ABE08939.1| tRNA nucleotidyl transferase [Escherichia coli UTI89] gi|115514493|gb|ABJ02568.1| tRNA nucleotidyl transferase [Escherichia coli APEC O1] gi|218366912|emb|CAR04683.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli S88] gi|226899223|gb|EEH85482.1| tRNA nucleotidyl transferase [Escherichia sp. 3_2_53FAA] gi|294491470|gb|ADE90226.1| multifunctional CCA protein [Escherichia coli IHE3034] gi|307625329|gb|ADN69633.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli UM146] gi|315288832|gb|EFU48230.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 110-3] gi|315297758|gb|EFU57035.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 16-3] gi|323951410|gb|EGB47285.1| poly A polymerase head domain-containing protein [Escherichia coli H252] gi|323957783|gb|EGB53497.1| poly A polymerase head domain-containing protein [Escherichia coli H263] gi|331053927|gb|EGI25956.1| multifunctional CCA protein [Escherichia coli TA206] Length = 412 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLCFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|237749035|ref|ZP_04579515.1| poly(A) polymerase [Oxalobacter formigenes OXCC13] gi|229380397|gb|EEO30488.1| poly(A) polymerase [Oxalobacter formigenes OXCC13] Length = 463 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 153/386 (39%), Gaps = 31/386 (8%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++ + ++ +L + IVGGAVRD L+ L +D D+AT P++V R+F + Sbjct: 34 PRLLSNNAVRVVRILQNEGYDAFIVGGAVRDLLLGLKPKDFDVATNATPEQVKRLFKRA- 92 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDL------ITDGRYAKVVFTRDWKADSLRRD 121 + + ++ + ++TT R GR + D+ RRD Sbjct: 93 ---FLIGRRFQIVHVMFGQDLIEVTTFRGASDKPAIKDESGRLLRDNNFGTQSEDAARRD 149 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y + + ++DY GG+ DLR++T++ IG+ R ED +R+LR RF A G Sbjct: 150 FTINAMYYNPANQVLLDYHGGIKDLRSKTLRVIGNPEQRYREDPVRMLRIVRFAAKLG-F 208 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +ID + + S R++ E+ KLL + + ++ + + G+ + + + + Sbjct: 209 SIDKTTGAPIAALAPLMNNVPSARLFDEMLKLLMSGHSMSCLKELRARGLHQGLLP-LLD 267 Query: 241 ISLDQLSQVIEAEQVFEWK---------IDSLLRFIVLISWQDKKSILSMAKK------- 284 ++L+Q E E I F L+ Q ++ K Sbjct: 268 VALEQPEAAHFIELSLEKTDQRIRQNKRISPGFLFATLLWTQVEEKWAEYRAKGEHPIPA 327 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH-- 342 + + + + +I L + + ++ + Sbjct: 328 LVAASSDVLDVQTEKLAIQRRIATDMRDIWLLQPRLERRTGKSPYRLLENERFRAAYDFM 387 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGD 368 C ++ +++ W +GD Sbjct: 388 LIRCEAGELEAELGQWWTEFIDASGD 413 >gi|109521445|ref|YP_655873.1| gp8 [Mycobacterium phage Wildcat] gi|91980897|gb|ABE67613.1| gp8 [Mycobacterium phage Wildcat] Length = 401 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 89/400 (22%), Positives = 158/400 (39%), Gaps = 32/400 (8%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 K +VGG VRD L+ QDIDIAT P+ I K + + +GT+ Sbjct: 15 APHKIYLVGGTVRDMLLGRESQDIDIATDAPPEVSSDILRKWGEEFWDPGVRFGTVCAKK 74 Query: 85 RKKYFDITTLRS-DLITDG-RYAKVVFTRDWKADSLRRDFTINALYA--DQQGKVIDYVG 140 +TT R+ + T G R+ KV + + D LRRDFTINA+ D G V + G Sbjct: 75 GDMEVQVTTFRAAEDYTQGDRHPKVQWGSHIENDLLRRDFTINAIAQHIDPDGHVT-WTG 133 Query: 141 ---GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 +D+ R ++ + +D LR++R RF A + ++ ++ + Sbjct: 134 RAQAFSDINRRILRTPINPIKSFTDDPLRLIRAARFQAQLPDFSVATETWEGMESCAPHI 193 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 + ++SERI +E+ K+L A P + + + GI + + + + + Sbjct: 194 RNVASERIVAELEKMLLAPQPFKGAILLESTGIAQILLPESAATPI-----------LNT 242 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI------RYFLISFFNCNFNQKTLSIP 311 D +R+ V + + K+ + + L+ F+ + Q T S Sbjct: 243 VDADLDIRWAVWLFTTPWRQAEKALKRLKVDKRTFTRVPRLLRLLEIFHAHEIQDTWSPS 302 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++++ L L Y+ + V W + + +G+DV+ Sbjct: 303 KVRRF-----KVEAKDDLLAVEHLAYHTTGARRYWLAESVGGASAAWHRYVPQSSGEDVI 357 Query: 372 K-YGIPPGKKVGNILVHCKQEW-INSSFQLSQEDLHHLLR 409 GI G++VG L ++ F E+L L Sbjct: 358 AALGIAEGREVGVCLKQIQERIFREGRFFGKGEELEWLKE 397 >gi|118580041|ref|YP_901291.1| poly(A) polymerase [Pelobacter propionicus DSM 2379] gi|118502751|gb|ABK99233.1| poly(A) polymerase [Pelobacter propionicus DSM 2379] Length = 455 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 45/320 (14%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + L L +VGG VRD L+ +D D+ T P++V RIF Sbjct: 18 ISRK-LVSPNALRTLYRLKDNGFIGYLVGGCVRDLLLGREPKDFDVVTNATPNQVKRIFR 76 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRD 112 R + I + + ++ T RS T+ R+ +++ D Sbjct: 77 NCRL----VGRRFRLAHIHFQDEIIEVATFRSPASDEPDPAPKKPDETEQRHPRMLKDDD 132 Query: 113 -----------WKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 + D+LRRDFT+N+L + +ID+ GGL DL I+ IGD R Sbjct: 133 GMILRDNVYGTPEEDALRRDFTVNSLAYNIADFSIIDFTGGLADLSAGIIRTIGDPAVRF 192 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED +R+LR RF A G I+ A + A + + R++ E+ KL + Sbjct: 193 QEDPVRMLRAVRFAAQLG-FTIEEQTRKALVAATDTIVRSAPPRLYEEVLKLFLSGEGAK 251 Query: 221 AIVHMYNGGIFKEIFLDVQEI-----------SLDQLSQVIEAEQVFEWKIDSLLRFIVL 269 H+ G+F +F D ++ +++ K+ L +L Sbjct: 252 CYDHLSRTGLFAALFPDFSNWLGVEGECFPHTRFGEMLAHVDSRIQQGHKVSPPLLLALL 311 Query: 270 ISWQDKKSILSMAKKFSLPR 289 + I A++F Sbjct: 312 FG----EYIDDKAERFRRQN 327 >gi|53728854|ref|ZP_00134674.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 492 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 152/423 (35%), Gaps = 53/423 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 142 -IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRR 200 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 201 DFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDM 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + LK + + R++ E KL ++ M G+F+++F + Sbjct: 261 F-LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLT 319 Query: 240 EISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ E +++ F L+ + ++ + + + L Sbjct: 320 PFFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 379 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + N + L + + F + Q T Sbjct: 380 SHDAMMLAA------NDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEH 433 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHH 406 ++ + + G D+V W F + ++ Sbjct: 434 VKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEMLK 477 Query: 407 LLR 409 +R Sbjct: 478 AVR 480 >gi|26991381|ref|NP_746806.1| poly(A) polymerase [Pseudomonas putida KT2440] gi|24986448|gb|AAN70270.1|AE016667_3 poly(A) polymerase [Pseudomonas putida KT2440] Length = 460 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 20/248 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ D GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQ 154 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 155 RRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I+ + L+ + R++ E KL + A + + +F+ +F Sbjct: 215 -DFGIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP- 272 Query: 238 VQEISLDQ 245 +LD+ Sbjct: 273 ASAHALDE 280 >gi|218691361|ref|YP_002399573.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli ED1a] gi|254813693|sp|B7N0K6|CCA_ECO81 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|218428925|emb|CAR09874.2| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli ED1a] Length = 412 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|148549764|ref|YP_001269866.1| poly(A) polymerase [Pseudomonas putida F1] gi|148513822|gb|ABQ80682.1| poly(A) polymerase [Pseudomonas putida F1] Length = 460 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 20/248 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +NI+ L ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ D GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQ 154 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D +++DY G++D+RNR ++ IGD HR ED +R+LR RF A Sbjct: 155 RRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I+ + L+ + R++ E KL + A + + +F+ +F Sbjct: 215 -DFGIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFP- 272 Query: 238 VQEISLDQ 245 +LD+ Sbjct: 273 ASAHALDE 280 >gi|191172534|ref|ZP_03034074.1| multifunctional CCA protein [Escherichia coli F11] gi|300977454|ref|ZP_07173917.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 200-1] gi|190907202|gb|EDV66801.1| multifunctional CCA protein [Escherichia coli F11] gi|300308312|gb|EFJ62832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 200-1] gi|324011997|gb|EGB81216.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 60-1] Length = 412 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|238061892|ref|ZP_04606601.1| HDIG domain-containing protein [Micromonospora sp. ATCC 39149] gi|237883703|gb|EEP72531.1| HDIG domain-containing protein [Micromonospora sp. ATCC 39149] Length = 486 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 164/449 (36%), Gaps = 58/449 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + +VGG+VRD+L+ D+D T PD+ +RI + T Sbjct: 33 ADELGRRFADAGHELHLVGGSVRDALLGRLGDDLDFCTDAHPDQTLRIVKGWAESIWETG 92 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI +ITT R++ R V + D RRDFTINA+ + Sbjct: 93 REFGTIGCQRDGLRLEITTFRAEAYDQVSRNPIVEYGTSLTEDLRRRDFTINAMAVSLPE 152 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D GGL+DL R I+ G +D LR+LR RF A + D A Sbjct: 153 HRFTDPHGGLDDLAARVIRTPGTPAESFGDDPLRMLRAARFTAQL-RFAVHPDVRAAMAA 211 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L +++ERI E KLL +P+ + + + G+ + ++ + L ++ + + Sbjct: 212 MAADLDRITAERIRDEFTKLLCGADPITGLRLLVDTGLAERFLPELTGLKL-EIDEHAQH 270 Query: 253 EQVFEWKI--------------DSLLRFIVLISWQDKKSILSMA---------------- 282 + V+E + D +LR L+ K + ++ Sbjct: 271 KDVYEHTLTVVANAVSYETDGCDFVLRMAALMHDVGKPATKAVGSDGRVSFHHHEVVGAR 330 Query: 283 ------KKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKI 331 K P+++ ++ + + + +++ GD ++A+L Sbjct: 331 LTKARMKAMRYPKDVTAQVVKLVGLHLRFYGYGRGEWTDSAVRRYVTDAGD--LLARLHK 388 Query: 332 FLALHYNNLTHQD----------TCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKK 380 + + ++ + L G+ +++ G+PPG Sbjct: 389 LTRSDCTTRNRRKAAALAADYDALEERIARIAAEEDLARVRPDLDGNAIMELLGVPPGPM 448 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409 VG H K+ + E LLR Sbjct: 449 VGRAWKHLKELRLERGPLDRDEAEAELLR 477 >gi|190149447|ref|YP_001967972.1| poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914578|gb|ACE60830.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 521 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 152/423 (35%), Gaps = 53/423 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 96 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQCRL--- 152 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 153 -IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRR 211 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 212 DFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDM 271 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + LK + + R++ E KL ++ M G+F+++F + Sbjct: 272 F-LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLT 330 Query: 240 EISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ E +++ F L+ + ++ + + + L Sbjct: 331 PFFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 390 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + N + L + + F + Q T Sbjct: 391 SHDAMMLAA------NDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEH 444 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHH 406 ++ + + G D+V W F + ++ Sbjct: 445 VKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEMLK 488 Query: 407 LLR 409 +R Sbjct: 489 AVR 491 >gi|126207664|ref|YP_001052889.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae L20] gi|126096456|gb|ABN73284.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 510 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 152/423 (35%), Gaps = 53/423 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 142 -IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRR 200 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 201 DFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDM 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + LK + + R++ E KL ++ M G+F+++F + Sbjct: 261 F-LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLT 319 Query: 240 EISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ E +++ F L+ + ++ + + + L Sbjct: 320 PFFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 379 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + N + L + + F + Q T Sbjct: 380 SHDAMMLAA------NDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEH 433 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHH 406 ++ + + G D+V W F + ++ Sbjct: 434 VKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEMLK 477 Query: 407 LLR 409 +R Sbjct: 478 AVR 480 >gi|281180110|dbj|BAI56440.1| tRNA nucleotidyltransferase [Escherichia coli SE15] Length = 412 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVSLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|284923084|emb|CBG36177.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Escherichia coli 042] Length = 412 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRMPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|225020840|ref|ZP_03710032.1| hypothetical protein CORMATOL_00848 [Corynebacterium matruchotii ATCC 33806] gi|224946322|gb|EEG27531.1| hypothetical protein CORMATOL_00848 [Corynebacterium matruchotii ATCC 33806] Length = 531 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 87/460 (18%), Positives = 161/460 (35%), Gaps = 69/460 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + N +VGG+VRD+L+ D+D T P+ ++ I T Sbjct: 49 IQPLAAEFNTRGHHLYLVGGSVRDALLGRLGNDVDFTTDARPETILEILEHFADITWDTG 108 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I YGT+ + +ITT RSD+ + R +VVF D +RRDFTINA+ + Sbjct: 109 IEYGTVSAEKSGQQIEITTFRSDIYDGESRNPEVVFGDTLAGDLVRRDFTINAMAVEITS 168 Query: 134 --------------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 + D +GG DL I +D LR+LR RF + G Sbjct: 169 APDAAGATPAAAELEFFDPMGGFADLMKGVIDTPAAPDQSFADDPLRLLRAARFSSQLGF 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 D A ++ ++ ER+ E++K+L P I M G+ +F ++ Sbjct: 229 AVSD-RVRAAMTDLASEIQRITVERVQVELDKMLLGAQPWLGIDLMVTTGLADYVFPELP 287 Query: 240 EISLDQLSQVIEAEQVFEW---------------KIDSLLRFIVLISWQDKKSILSMA-- 282 + L Q + + + V+ + D +LR+ L+ K Sbjct: 288 RLQLAQ-DEHHQHKDVYAHSLQVLRQAMDQEAAGEPDLVLRWAALVHDIGKPDTREFTED 346 Query: 283 --------------------KKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYL 319 +K + + + + S + Y+ Sbjct: 347 GRVSFHQHEVVGAKLVRNRMRKLKYSKAMVRDVSQLVYLHMRFHGFSEGQWTDSAVRRYV 406 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDD 369 ++ +L + + ++ Q+ + + K L G + Sbjct: 407 TDAGDLLPRLHKLVRADCTTRNKRKAAWLRQMYAQLEERIADLAAKEDLAKVRPDLDGKE 466 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ G+ PG VG + K+ + L +++ +L Sbjct: 467 IMAILGLQPGPDVGEAWSYLKEVRLERG-PLDRDEAIKVL 505 >gi|331648857|ref|ZP_08349945.1| multifunctional CCA protein [Escherichia coli M605] gi|330909122|gb|EGH37636.1| tRNA nucleotidyltransferase [Escherichia coli AA86] gi|331042604|gb|EGI14746.1| multifunctional CCA protein [Escherichia coli M605] Length = 412 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|306816590|ref|ZP_07450722.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli NC101] gi|331684707|ref|ZP_08385299.1| multifunctional CCA protein [Escherichia coli H299] gi|305850155|gb|EFM50614.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli NC101] gi|331078322|gb|EGI49528.1| multifunctional CCA protein [Escherichia coli H299] Length = 412 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|886309|gb|AAB53125.1| polyA polymerase [Mycobacterium leprae] Length = 411 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69 H L ++ S+ + +VGG+VRD+L+ D+D AT P++V +I + Sbjct: 21 HTPVLRDLGSVFAASGHELYLVGGSVRDALLGRLDSPDLDFATDAGPEQVQQIMRRWADN 80 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY 128 + T I +GTI + +ITT R+D R +V F+ D +RRDFT+NA+ Sbjct: 81 LWETGIEFGTIGVGKGDYRLEITTFRADRYDQVSRNPEVRFSDRLDDDLVRRDFTVNAMA 140 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G+ D +GGL LR R ++ +D LRI+R RF + G + Sbjct: 141 VRIASYGPGEFFDPLGGLAALRVRVLETPAAPSVSFGDDPLRIVRAARFVSQLG-FTVAP 199 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 A + L +S+ER+ +E++KLL + I + G+ + + ++ ++ + Sbjct: 200 QVHAAIEEMASQLARISAERVSTELDKLLLGNDAAAGIDLLVQTGMGEVVLPEIGDMRM- 258 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS------LPREIRYFLISF 298 + + + + V++ + ++LR + + +L A R +SF Sbjct: 259 AIDEHHQHKDVYQHSL-TVLRQAIALEDNGPDLVLRWAALLHDIGKPATRRHELNGGVSF 317 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH 336 + + ++ L Y K ++ + + LH Sbjct: 318 HHHEVVGAKMVRKRMRALKY---AKQLVDDVSQLVYLH 352 >gi|154486329|ref|ZP_02027736.1| hypothetical protein BIFADO_00138 [Bifidobacterium adolescentis L2-32] gi|154084192|gb|EDN83237.1| hypothetical protein BIFADO_00138 [Bifidobacterium adolescentis L2-32] Length = 458 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 86/458 (18%), Positives = 171/458 (37%), Gaps = 67/458 (14%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY-KVIPTSISYGT 79 + + +VGG VRD L++ D+D T+ P++ I + + +GT Sbjct: 1 MFAAEGYELALVGGPVRDLLLHRKSHDLDFCTSARPEQFEHILRRFGHDGFWDMGRKFGT 60 Query: 80 IKIICRKK-----YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 + + R++ ++TT RSD D R +V + + D RRDFT+NA+ + Sbjct: 61 LGAMRRREDGTEVKVEVTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPE 120 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GG NDL ++ D +D LR++R RF A G + I+ + A Sbjct: 121 LEFVDPFGGANDLAKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSD 179 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++I+S+ER+ E+ KLL + P I + + G+ + ++ + L ++ + Sbjct: 180 MVDRIEIVSAERVRDELVKLLLSDRPRAGIEALVDSGLADIVLPEIPALQL-EIDEHHRH 238 Query: 253 EQVFEWKIDSLLRFIVLISWQD-----KKSILSMAKKFS---LPREIRYFL---ISFFNC 301 + VFE + + R + L + D L +A P+ R+ +SF Sbjct: 239 KDVFEHTMIVIERAVALETGPDGPVPAPDLTLRLAALLHDIGKPKTRRFEAGGKVSFHRH 298 Query: 302 NFNQKTLSIPEIKKLFYLY----------------------------------GDKVMIA 327 + ++ +K L + + + Sbjct: 299 DAVGAKMTRKRLKALHFDHHMVEDVSELVNLHLRFHGYVEEPWTDSAVRRYVKDAGPLYE 358 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVKY-GIP 376 +L + + ++ + L L GD++++ I Sbjct: 359 RLNRLTRADTTTQNKRKAMMFSAAMDEMEQRVRDLKEKEDFDAIRPDLNGDEIMQLLSIE 418 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 PG VG H + +++ + ++ L + Sbjct: 419 PGPMVGKAYKHMLEYRLDNG-PVERDVAVAELERWYKE 455 >gi|16130952|ref|NP_417528.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli str. K-12 substr. MG1655] gi|89109826|ref|AP_003606.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli str. K-12 substr. W3110] gi|157162529|ref|YP_001459847.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli HS] gi|170018692|ref|YP_001723646.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli ATCC 8739] gi|170082599|ref|YP_001731919.1| fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli str. K-12 substr. DH10B] gi|188492602|ref|ZP_02999872.1| multifunctional CCA protein [Escherichia coli 53638] gi|194436695|ref|ZP_03068795.1| multifunctional CCA protein [Escherichia coli 101-1] gi|218706681|ref|YP_002414200.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli UMN026] gi|238902167|ref|YP_002927963.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli BW2952] gi|253772108|ref|YP_003034939.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038224|ref|ZP_04872282.1| multifunctional CCA protein [Escherichia sp. 1_1_43] gi|254163003|ref|YP_003046111.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli B str. REL606] gi|293406669|ref|ZP_06650595.1| multifunctional CCA protein [Escherichia coli FVEC1412] gi|297520636|ref|ZP_06939022.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli OP50] gi|300901437|ref|ZP_07119522.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 198-1] gi|300905805|ref|ZP_07123539.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 84-1] gi|300917407|ref|ZP_07134073.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 115-1] gi|300931940|ref|ZP_07147237.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 187-1] gi|300950736|ref|ZP_07164624.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 116-1] gi|300958441|ref|ZP_07170580.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 175-1] gi|301301904|ref|ZP_07208038.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 124-1] gi|301644751|ref|ZP_07244726.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 146-1] gi|307139744|ref|ZP_07499100.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli H736] gi|312972681|ref|ZP_07786854.1| poly A polymerase head domain protein [Escherichia coli 1827-70] gi|331643754|ref|ZP_08344885.1| multifunctional CCA protein [Escherichia coli H736] gi|115939|sp|P06961|CCA_ECOLI RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|167006456|sp|A8A4L0|CCA_ECOHS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|189081873|sp|B1IRR0|CCA_ECOLC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702051|sp|B1XG61|CCA_ECODH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702052|sp|B7ND45|CCA_ECOLU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|259585841|sp|C4ZQX3|CCA_ECOBW RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|145468|gb|AAA23541.1| tRNA nucleotidyltransferase [Escherichia coli] gi|882578|gb|AAA89136.1| CG Site No. 933 [Escherichia coli str. K-12 substr. MG1655] gi|1789436|gb|AAC76092.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli str. K-12 substr. MG1655] gi|85675857|dbj|BAE77107.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli str. K12 substr. W3110] gi|157068209|gb|ABV07464.1| multifunctional CCA protein [Escherichia coli HS] gi|169753620|gb|ACA76319.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli ATCC 8739] gi|169890434|gb|ACB04141.1| fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli str. K-12 substr. DH10B] gi|188487801|gb|EDU62904.1| multifunctional CCA protein [Escherichia coli 53638] gi|194424177|gb|EDX40164.1| multifunctional CCA protein [Escherichia coli 101-1] gi|218433778|emb|CAR14695.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli UMN026] gi|226839848|gb|EEH71869.1| multifunctional CCA protein [Escherichia sp. 1_1_43] gi|238861261|gb|ACR63259.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli BW2952] gi|242378606|emb|CAQ33393.1| fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase [Escherichia coli BL21(DE3)] gi|253323152|gb|ACT27754.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974904|gb|ACT40575.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli B str. REL606] gi|253979060|gb|ACT44730.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli BL21(DE3)] gi|260447908|gb|ACX38330.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Escherichia coli DH1] gi|291426675|gb|EFE99707.1| multifunctional CCA protein [Escherichia coli FVEC1412] gi|300314882|gb|EFJ64666.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 175-1] gi|300355139|gb|EFJ71009.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 198-1] gi|300402404|gb|EFJ85942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 84-1] gi|300415364|gb|EFJ98674.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 115-1] gi|300449973|gb|EFK13593.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 116-1] gi|300460363|gb|EFK23856.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 187-1] gi|300842885|gb|EFK70645.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 124-1] gi|301076905|gb|EFK91711.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 146-1] gi|309703487|emb|CBJ02827.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Escherichia coli ETEC H10407] gi|310332623|gb|EFP99836.1| poly A polymerase head domain protein [Escherichia coli 1827-70] gi|315137650|dbj|BAJ44809.1| multifunctional CCA protein [Escherichia coli DH1] gi|315256967|gb|EFU36935.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 85-1] gi|315617128|gb|EFU97737.1| poly A polymerase head domain protein [Escherichia coli 3431] gi|323935942|gb|EGB32237.1| poly A polymerase head domain-containing protein [Escherichia coli E1520] gi|323941846|gb|EGB38025.1| poly A polymerase head domain-containing protein [Escherichia coli E482] gi|323960974|gb|EGB56592.1| poly A polymerase head domain-containing protein [Escherichia coli H489] gi|323971821|gb|EGB67046.1| poly A polymerase head domain-containing protein [Escherichia coli TA007] gi|331037225|gb|EGI09449.1| multifunctional CCA protein [Escherichia coli H736] gi|332345010|gb|AEE58344.1| poly A polymerase head protein [Escherichia coli UMNK88] Length = 412 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|308063569|gb|ADO05456.1| poly(A) polymerase [Helicobacter pylori Sat464] Length = 388 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 106/401 (26%), Positives = 166/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITAFKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 VID G N + N+ I+ +G+A R ED LRILR RF A G K I A Sbjct: 125 SPTKGVIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NK L KN ++EI V + ++ L + Sbjct: 184 IFAYKDLLKHLSKERLQSELNKFLMGKNAYEVAKE------YQEILELVTQEKIESLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KSAPFNLE------LRLLGFFKHQKS------LENLCYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKRALKIKGLLKEIFNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L +R Sbjct: 345 TLQNLGYRR-QQIGEILNACLNLVIAHPENNSLERLVEWVR 384 >gi|188527511|ref|YP_001910198.1| poly(A) polymerase [Helicobacter pylori Shi470] gi|188143751|gb|ACD48168.1| poly(A) polymerase [Helicobacter pylori Shi470] Length = 388 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 160/400 (40%), Gaps = 22/400 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELQELFDIYEKSSHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 VID G N + N+ I+ +G A R ED LRILR RF A G K I A Sbjct: 125 SPTKGVIDPFKGQNAIENQIIECVGGARLRFFEDALRILRALRFSAILGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NK L KN ++EI V + ++ L + Sbjct: 184 IFACKDLLKHLSKERLQSELNKFLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 A LR + Q + P++ + C+ + + Sbjct: 238 KNAPFNLG------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKDFLNIH 285 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 K D F AL + + ++ + +KK L G Sbjct: 286 NKTGLKFLLKNYDLEPFNLALDFYALKNPKCALKIKSLLKEIFNANEPFKKEHLALKGGT 345 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I S E L +R Sbjct: 346 LQNLGYRRQK-IGEILNACLNLVIAHPENNSLERLVEWVR 384 >gi|323966585|gb|EGB62018.1| poly A polymerase head domain-containing protein [Escherichia coli M863] gi|327251842|gb|EGE63528.1| poly A polymerase head domain protein [Escherichia coli STEC_7v] Length = 412 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|300937461|ref|ZP_07152287.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 21-1] gi|300457496|gb|EFK20989.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 21-1] Length = 412 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|303250925|ref|ZP_07337116.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252000|ref|ZP_07338171.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247163|ref|ZP_07529214.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251707|ref|ZP_07533611.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260634|ref|ZP_07542326.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262766|ref|ZP_07544393.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|302649430|gb|EFL79615.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650231|gb|EFL80396.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856301|gb|EFM88453.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860793|gb|EFM92802.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869711|gb|EFN01496.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871911|gb|EFN03628.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 510 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 152/423 (35%), Gaps = 53/423 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 142 -IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRR 200 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 201 DFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDM 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + LK + + R++ E KL ++ M G+F+++F + Sbjct: 261 F-LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLT 319 Query: 240 EISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ E +++ F L+ + ++ + + + L Sbjct: 320 PFFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 379 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + N + L + + F + Q T Sbjct: 380 SHDAMMLAA------NDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEH 433 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHH 406 ++ + + G D+V W F + ++ Sbjct: 434 VKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEMLK 477 Query: 407 LLR 409 +R Sbjct: 478 AVR 480 >gi|300859512|ref|YP_003784495.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|300686966|gb|ADK29888.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|302207195|gb|ADL11537.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis C231] gi|302331756|gb|ADL21950.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308277448|gb|ADO27347.1| tRNA nucleotidyltransferase [Corynebacterium pseudotuberculosis I19] Length = 533 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 91/447 (20%), Positives = 169/447 (37%), Gaps = 55/447 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + L K + +VGG+VRD+L++ D+D T P+ VM I + V T Sbjct: 70 LAPLAQLFQKRGHRLYLVGGSVRDALLDELGNDLDFTTDARPETVMEILNDYTSVVWDTG 129 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY--ADQ 131 I +GT+ + +ITT RSD+ R +V F + D +RRDF +NA+ Sbjct: 130 IEFGTVSAEKDGQQIEITTFRSDVYDGKTRNPEVQFGDSLEGDLIRRDFRVNAMAVEVHP 189 Query: 132 QGK--VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G+ D V G++DL + + +D LR+LR RF + E ++ A Sbjct: 190 TGEMTFHDPVKGMDDLVKKVLDTPSLPEQSFNDDPLRMLRAARFVSQL-EFSVADRVDNA 248 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245 + + ++ ERI E++KLL + P + I M + G+ + I ++ + L Q Sbjct: 249 MTQMADQIDRITVERIQVELDKLLCGRAPWDGIDLMVDTGLAERIIPEIPALRLTQDEHR 308 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA-------------- 282 L+ + +A + E D +LR+ L+ K + Sbjct: 309 QHKDVYLHSLTVLRQAMEQEEDGPDVVLRWASLMHDCGKPDTRAFTDEGKVSFHHHEIVG 368 Query: 283 --------KKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKLKI 331 + +++ + + S E Y+ +++KL Sbjct: 369 ARIMRARMRALKYSKQMVNDVSDLIRLHMRFHGFSEGEWTDSAVRRYVTDAGPLLSKLHK 428 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + + + + ++ L G++++K + PG Sbjct: 429 LVRADCTTRNKKKAARLQRTYDHLEERIAEIAEREDLQRVRPDLDGNEIMKILDLQPGPD 488 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHL 407 VG K+ + S+E + L Sbjct: 489 VGRAWSFLKELRLERGPLPSEEAIAEL 515 >gi|315586679|gb|ADU41060.1| poly(A) polymerase [Helicobacter pylori 35A] Length = 407 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 169/401 (42%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSATLGFKIVLS-TKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYNLEPFNLAL-DFYALKNPKRALKIKGLLKEIFNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L ++ Sbjct: 345 TLQNLGYQH-QQIGEILNACLNLVIAHPENNSLEWLIKWVK 384 >gi|25029484|ref|NP_739538.1| putative tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314] gi|259508336|ref|ZP_05751236.1| polyA polymerase [Corynebacterium efficiens YS-314] gi|23494773|dbj|BAC19738.1| putative tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314] gi|259164070|gb|EEW48624.1| polyA polymerase [Corynebacterium efficiens YS-314] Length = 489 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 165/449 (36%), Gaps = 57/449 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + + +VGG+VRD+ + D+D T+ P+ I V T Sbjct: 35 LTPLAAAFTEQGHSLYLVGGSVRDAFLGTLGNDLDFTTSAPPEITRAILDDYAEVVWDTG 94 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I++GT+ + +ITT RSD+ R +V F D +RRDF +NA+ + G Sbjct: 95 IAFGTLSAEKHGQQIEITTFRSDVYDGTSRNPEVTFGDTLDGDLIRRDFKVNAMAVEIAG 154 Query: 134 K----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D VGGL+DL +R + +D LR+LR RF + G D + A Sbjct: 155 DGTLSFHDPVGGLDDLLHRRLDTPAAPEQSFNDDPLRMLRAARFVSQLGFTVADC-VVTA 213 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + + +++ER+ E++KL+ +P I M + GI + IF ++ + + Q + Sbjct: 214 MTEMAGQISRITAERVQVELDKLMLGAHPEEGIDLMVDTGIAEVIFPEIPAMQMTQ-DEH 272 Query: 250 IEAEQVFEW-------------KIDSLLRFIVLISWQDKKSILSMA-------------- 282 ++ + V+ + D +LR+ L+ K Sbjct: 273 MQHKDVYRHSLQVMRQSIDQETEPDLVLRWAALLHDCGKPDTREFNEDGRVSFHQHEVVG 332 Query: 283 --------KKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKI 331 +K +++ + + + Y+ ++ +L Sbjct: 333 AKLVRRRMRKLKYSKQMVNDVSQLVFLHMRFHGFGEGQWTDSAVRRYVADAGELLPRLHK 392 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + + + + L G+++++ IP G + Sbjct: 393 LVRADCTTRNKRKAQRLQATYDHLEERIADIAAREDLARVRPDLDGNEIMEILNIPAGPQ 452 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409 VG K+ + L ++D L+ Sbjct: 453 VGKAWSFLKELRLERG-PLERDDAIAELK 480 >gi|320201966|gb|EFW76541.1| tRNA nucleotidyltransferase [Escherichia coli EC4100B] Length = 412 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFLVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|293412433|ref|ZP_06655156.1| phosphatase [Escherichia coli B354] gi|293416495|ref|ZP_06659134.1| multifunctional CCA protein [Escherichia coli B185] gi|291431851|gb|EFF04834.1| multifunctional CCA protein [Escherichia coli B185] gi|291469204|gb|EFF11695.1| phosphatase [Escherichia coli B354] Length = 412 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|165975632|ref|YP_001651225.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875733|gb|ABY68781.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 510 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 152/423 (35%), Gaps = 53/423 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 142 -IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRR 200 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++N+LY D + +I D+ G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 201 DFSVNSLYYDPKHNLIFDFFDGITDLKAGKLRLIGDPVVRYQEDPVRMLRAVRFMAKLDM 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + LK + + R++ E KL ++ M G+F+++F + Sbjct: 261 F-LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEQLFPVLT 319 Query: 240 EISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ E +++ F L+ + ++ + + + L Sbjct: 320 PFFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 379 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + N + L + + F + Q T Sbjct: 380 SHDAMMLAA------NDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEH 433 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHH 406 ++ + + G D+V W F + ++ Sbjct: 434 VKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEMLK 477 Query: 407 LLR 409 +R Sbjct: 478 AVR 480 >gi|224534511|ref|ZP_03675087.1| polynucleotide adenylyltransferase [Borrelia spielmanii A14S] gi|224514188|gb|EEF84506.1| polynucleotide adenylyltransferase [Borrelia spielmanii A14S] Length = 410 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 101/394 (25%), Positives = 170/394 (43%), Gaps = 18/394 (4%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 + +VGGA+RD L+N D D AT P+ ++++F I T I +GTI II Sbjct: 20 NNYEFYLVGGALRDLLLNKQPCDFDFATNATPEEIIKLFPNN----IKTGIKHGTIGIIF 75 Query: 85 RKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGG 141 KK F+ITT R + + + A V +T++ D RRDFTINA+ D +ID G Sbjct: 76 NKKIFEITTYRIEKEYEKKRAPKQVEYTKNLIKDLKRRDFTINAIAMDIFNFNIIDCYDG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 DL + I+ IG+ + R ED LRILR RF + NI+ + L++ K+ + ++S Sbjct: 136 KKDLNKKIIRCIGNPNKRFEEDALRILRAARFSSTLN-FNIEKNTLISMKYKKENILMIS 194 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERI +E +KLLE N I ++ FK F +L+ +++I+ + Sbjct: 195 KERIKNEFHKLLEGINIQKGIYYLKKVDFFKNFF------NLEIKTKLIKKTALLNKDKF 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 L +L + K + + ++ + + + ++ ++ + YL Sbjct: 249 YLKAITILTIKKPIKELKESLTLLKFSNKEIRLILFYRSIIDDNNIFNVKKLSDIRYLLS 308 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL----FPLTGDDVVKYGIPP 377 +I + FI++ + K PL + G DV Sbjct: 309 KSTREHYKEIIDIYKALKGKKKKYLFIIKNIKRKKLLKSPLSLKDLKINGKDVQNLVQIE 368 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 K +G IL I + ++ L ++ L Sbjct: 369 NKNIGKILNLLLNYVIENPKLNTKNCLIKKIKIL 402 >gi|170680641|ref|YP_001745328.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli SMS-3-5] gi|331674598|ref|ZP_08375358.1| multifunctional CCA protein [Escherichia coli TA280] gi|226702054|sp|B1LF48|CCA_ECOSM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|170518359|gb|ACB16537.1| multifunctional CCA protein [Escherichia coli SMS-3-5] gi|331068692|gb|EGI40087.1| multifunctional CCA protein [Escherichia coli TA280] Length = 412 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|331654655|ref|ZP_08355655.1| multifunctional CCA protein [Escherichia coli M718] gi|331048037|gb|EGI20114.1| multifunctional CCA protein [Escherichia coli M718] Length = 412 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYHQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|313113897|ref|ZP_07799456.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623776|gb|EFQ07172.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 477 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 132/298 (44%), Gaps = 11/298 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L L++ + +VGG VRDSL+ L+ D D+ T+ LP +VM +F R I Sbjct: 6 DEGAAELLDTLHRAGYAAYVVGGCVRDSLLGLTPHDWDLCTSALPQQVMELFGAQR--CI 63 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 PT + +GT+ + ++ITT R++ TDGR+ +V F D + D RRD TINA+ Sbjct: 64 PTGLQHGTVTVKQSGALYEITTFRTEGTYTDGRHPDEVHFVPDVREDLARRDLTINAMAY 123 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++ +ID GG DL++ ++ +G R ED LRILR +RF A +G ID A Sbjct: 124 NEKEGLIDPFGGQADLQSGILRAVGVPRQRFTEDALRILRLYRFAARFG-FAIDPPTAQA 182 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + + L +S ERI E L A + I I ++ +L V Sbjct: 183 AQELCAHLDCVSVERIEEE----LAKLLAAPAPAAYLDKKILLVILPELSSEALAAAKPV 238 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 ++A + +R L+ + ++ + Sbjct: 239 VDA--CPAGAENLSIRLAALLLSLGEDGTRRTLRRLRCSNACIEETAVLVREARRRDG 294 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 5/117 (4%) Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIF-LALHYNNLTHQDTCFILQVLSDIIHW--- 358 + T++ L G + ++ L D + ++ + Sbjct: 361 LRETTVTPDFTIYARRLLGKYNLCTVQRLAALGTALQPERAADFAALSELAEQLDADGVC 420 Query: 359 -KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + + G D++ G+P G + +L I + ++ L +++L AS Sbjct: 421 CRVSQLAVNGCDLMAAGVPAGPGIRKVLEALLDGVIREEYPNERQALLAAVQQLAAS 477 >gi|189502253|ref|YP_001957970.1| hypothetical protein Aasi_0872 [Candidatus Amoebophilus asiaticus 5a2] gi|189497694|gb|ACE06241.1| hypothetical protein Aasi_0872 [Candidatus Amoebophilus asiaticus 5a2] Length = 474 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 87/448 (19%), Positives = 171/448 (38%), Gaps = 65/448 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK--VIP 72 L I ++ ++C+VGG VRD + +DIDI + + ++ + V+ Sbjct: 13 LQKIGDTADRLGIETCVVGGFVRDLFLQRPSKDIDIVCVGNGIELAQAVAQELGEDIVVH 72 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 ++GT + + + R + + V D LRRDFTIN L Sbjct: 73 IFKTFGTAMLRWQDNEVEFVGARKESYSRDSRNPEVTQGTLVDDQLRRDFTINTLAIRIN 132 Query: 133 ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G++ID +GG++DL+ + IK D +D LR++R RF ID L+ Sbjct: 133 KSQWGELIDDLGGVSDLQQKIIKTPLDPGITFSDDPLRMMRAIRFATQL-RFTIDEVTLM 191 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 + + + +KI+S ERI E+NK++ A P +++ G+ K F + + + Q Sbjct: 192 SIQQHAERIKIISQERITEELNKIILADIPSKGFKLLFDTGLLKLFFPALVNLQGKETIQ 251 Query: 249 VIEAEQVFEWKIDSL-----------LRFIVLIS----------------------WQDK 275 + F + L LR+ ++ Sbjct: 252 GYTHKDNFYHTLQVLDNIAKHTNNLWLRWAAILHDIAKPLTKSFSPEIGFSFHGHEDLGA 311 Query: 276 KSILSMAKKFSLPREIR-YFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKL 329 K + + ++ LP + ++ + Q ++ +++L Y GD L Sbjct: 312 KLVPKIFRQLKLPLSEKMEYVQKLVRLHLRPIAIAQDVVTDSAVRRLIYEAGDD-----L 366 Query: 330 KIFLALHYNNLTHQDTCFILQVL-------------SDIIHWKKPLFPLTGDDVVK-YGI 375 + + L ++T + + Q L + + +TGD +++ + + Sbjct: 367 EDLMLLCRADITSNNPTKVKQYLGNFDKVERKVIEVEERDQIRNLQPVITGDIIMQTFQL 426 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQED 403 P + +G I K+ + + E+ Sbjct: 427 KPSRMIGEIKAAIKEAILEGEIRNEYEE 454 >gi|320195218|gb|EFW69847.1| tRNA nucleotidyltransferase [Escherichia coli WV_060327] Length = 412 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDNNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|301021239|ref|ZP_07185271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 196-1] gi|299881597|gb|EFI89808.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 196-1] Length = 412 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ I A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHISPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|121591044|ref|ZP_01678360.1| polyA polymerase [Vibrio cholerae 2740-80] gi|121547115|gb|EAX57248.1| polyA polymerase [Vibrio cholerae 2740-80] Length = 420 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 20/261 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R Sbjct: 1 ALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL----IG 56 Query: 75 ISYGTIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLRRDF 122 + I+ + ++ T R G + D+ RRDF Sbjct: 57 RRFRLAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDF 116 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINA+Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF + + Sbjct: 117 TINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFD 175 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I+ D + L+ + + R++ E K+L+A + L M +F+++F + E Sbjct: 176 IEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEH 235 Query: 242 SLDQLSQVIEAEQVFEWKIDS 262 S + EQ+ + +D+ Sbjct: 236 FTADHSS--KTEQMLDLVLDA 254 >gi|16761978|ref|NP_457595.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143465|ref|NP_806807.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213027244|ref|ZP_03341691.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161051|ref|ZP_03346761.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425623|ref|ZP_03358373.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581445|ref|ZP_03363271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213852379|ref|ZP_03381911.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827089|ref|ZP_06545878.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|73619842|sp|Q8Z3M9|CCA_SALTI RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|25288662|pir||AC0892 tRNA adenylyltransferase (EC 2.7.7.25) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504281|emb|CAD07729.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139099|gb|AAO70667.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 413 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLTLMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDVGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPVGVKLVEQLCQRLRVPN-DLRDLAKLVAAYHDLIHTFPILQPKT 318 >gi|108563048|ref|YP_627364.1| poly(A) polymerase [Helicobacter pylori HPAG1] gi|107836821|gb|ABF84690.1| poly(A) polymerase [Helicobacter pylori HPAG1] Length = 425 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 165/401 (41%), Gaps = 27/401 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + I ++V+ Sbjct: 5 EKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKEILLNNHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSSRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G A R ED LRILR RF A G K + A Sbjct: 125 SPTKGLIDPFKGQNAIENQVIECVGGARLRFFEDALRILRALRFSATLGFKIV-PSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVIQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++I + C+ T Sbjct: 238 KNAPLNLE------LRLLGFFKDQKS------LENLRYPKKICVLFLKAKECHKAFLNTH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F L + + ++ +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYVLENPKHALKIKGLLKEIFDSNEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + L L++ Sbjct: 345 ALQSLGYQHQK-IGEILNACLDLVIEN---PKNNALEWLIK 381 >gi|317012456|gb|ADU83064.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori Lithuania75] Length = 402 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 168/401 (41%), Gaps = 27/401 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDIYEKSSYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSAHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G A R ED LRILR RF A+ G K I A Sbjct: 125 SPTKGLIDPFKGQNAIENQMIECVGGARLRFFEDALRILRALRFSANLGFK-IAPSTKRA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + +++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQENIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + + Q + P++ C+ + Sbjct: 238 KNAPFNLE------LRLLGFLKHQKS------LENLRYPKKTCVLFTQAKECHKSFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNLKHALKIKRLLKEIFDSNEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I L L++ Sbjct: 345 TLQNLGYQH-QQIGEILNACLNSVIAH---PKNNALEWLIK 381 >gi|78224373|ref|YP_386120.1| Poly(A) polymerase, PcnB [Geobacter metallireducens GS-15] gi|78195628|gb|ABB33395.1| Poly(A) polymerase, PcnB [Geobacter metallireducens GS-15] Length = 457 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 118/314 (37%), Gaps = 48/314 (15%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L + +VGG VRD L+ +D D+AT P++V R+F R Sbjct: 25 SPNALRVLYRLKDNGCIAYLVGGCVRDLLLGREPKDFDVATNATPNQVKRLFRNCRL--- 81 Query: 72 PTSISYGTIKIICRKKYFDITTLRS---DLITDGRYAKV--------------------- 107 + I + + ++ T R+ + D A V Sbjct: 82 -VGRRFRLAHIHYQDEIIEVATFRALAPEEPEDTAPAPVSPENVPGEGERPRLPRHVVSD 140 Query: 108 -------VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHR 159 + D++RRDFT+NAL + +IDY G+ DLR I+ IGD R Sbjct: 141 EGMVLRDNVFGTPEEDAVRRDFTVNALAYNIADFSIIDYANGMEDLRRGVIRTIGDPLVR 200 Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 ED +R+LR RF A G ++ A + + ++ R++ E+ KL + Sbjct: 201 FTEDPVRMLRAVRFAATLG-FTVEDATWQAIRELAPAITRATAPRLYEEVLKLFLSGEGE 259 Query: 220 NAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE--QVFEWKID---------SLLRFIV 268 + G+F +F ++ ++ + EW D L + Sbjct: 260 RVYQLLRQAGLFSHLFPRFSAWLDREIDGFPHSQVGKALEWADDQVGGGEPVSPPLLLAL 319 Query: 269 LISWQDKKSILSMA 282 + ++ +A Sbjct: 320 MFGEYVEERAAELA 333 >gi|209920527|ref|YP_002294611.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli SE11] gi|226702053|sp|B6I427|CCA_ECOSE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|209913786|dbj|BAG78860.1| tRNA nucleotidyltransferase [Escherichia coli SE11] gi|324018179|gb|EGB87398.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 117-3] Length = 412 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 147/348 (42%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHEGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|301021846|ref|ZP_07185809.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 69-1] gi|331664669|ref|ZP_08365575.1| multifunctional CCA protein [Escherichia coli TA143] gi|300397862|gb|EFJ81400.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 69-1] gi|331058600|gb|EGI30581.1| multifunctional CCA protein [Escherichia coli TA143] Length = 412 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|317503931|ref|ZP_07961939.1| polyA polymerase family protein [Prevotella salivae DSM 15606] gi|315664957|gb|EFV04616.1| polyA polymerase family protein [Prevotella salivae DSM 15606] Length = 483 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 87/470 (18%), Positives = 179/470 (38%), Gaps = 72/470 (15%) Query: 10 FHDSDLINILS-----LLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 D+DL +L+ L+++ D + +VGG VRD + DID+ +V Sbjct: 4 LTDADLARLLNKDIFHLISEAADKLSLECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K ++GT ++ + R + + V + D Sbjct: 64 SELKSRLGKRAHLSVFRNFGTAQVKFHGMEIEFVGARKESYSHDSRKPHVEDGTLEDDQN 123 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL ++ G+++D G+ D+ + I+ D +D LR+LR RF Sbjct: 124 RRDFTINALAVCLNKERFGQLVDPFEGVYDMEDGIIRTPLDPDVTFSDDPLRMLRCIRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + + +KI+S ERI E+NK++ K P + +Y G+ + I Sbjct: 184 TQLNFF-IEDETFEALQRNAERIKIISGERIDDELNKIMLTKTPSKGFIDLYRCGLLQLI 242 Query: 235 FLDVQEI-----------------SLDQLSQVIEA--EQVFEWKIDSLLRFIVLIS---- 271 ++ + +L+ L + A E ++ LR+ L Sbjct: 243 IPELVTLDVVETRNGRAHKNNFYHTLEVLDNLCRAQDESGKHDEMSLWLRWAALFHDIGK 302 Query: 272 ------------------WQDKKSILSMAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE 312 + K + ++ ++ LP + + F+ + + ++ E Sbjct: 303 PRCKRWDNLNGWTFHNHNYVGAKMVPAIFRRMKLPMDNKMRFVQKMVDLHMRPIAIADEE 362 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD------------IIHWKK 360 + + + L ++T ++ + L + + +K+ Sbjct: 363 VTDSAVRRLMNDAGDDIDALMMLCEADITSKNQVRKQRFLDNFRIVREKIADLKVRDYKR 422 Query: 361 PLFP-LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 L P + G+++++ + P ++VG + K +++ + +E L LL Sbjct: 423 LLQPCIDGNEIMEMFHLGPCREVGQLKQTLKDAVLDNKVENEREPLMKLL 472 >gi|82778389|ref|YP_404738.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella dysenteriae Sd197] gi|309785360|ref|ZP_07679991.1| poly A polymerase head domain protein [Shigella dysenteriae 1617] gi|123561586|sp|Q32BQ8|CCA_SHIDS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|81242537|gb|ABB63247.1| tRNA nucleotidyl transferase [Shigella dysenteriae Sd197] gi|308926480|gb|EFP71956.1| poly A polymerase head domain protein [Shigella dysenteriae 1617] Length = 412 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 144/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYHQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLVFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|319944457|ref|ZP_08018731.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599] gi|319742418|gb|EFV94831.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599] Length = 488 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 16/247 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 S + L + IVGG VRD L+ + +D D+AT P+ V +F + R Sbjct: 66 SSAALRTCEELQHAGYSAYIVGGGVRDLLLGRAPKDFDVATDASPEAVQSLFRRARI--- 122 Query: 72 PTSISYGTIKIICRKKYFDITTLRS-----DLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + ++ ++ ++TT R+ GR + D+ RRDFT+NA Sbjct: 123 -IGRRFRIVHVMFGRETIEVTTFRAAHTNGQTDAHGRMLNDNVFGTREEDAYRRDFTVNA 181 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D +ID +GG++DL R ++ IGD R ED +R+LR RF A + +D Sbjct: 182 LYYDPIAETLIDPMGGVDDLSARLLRMIGDPTTRYREDPVRMLRTVRFAAKL-DFQVDPP 240 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L L+ + R++ E+ KLLE+ + L + + + G+ I LD Sbjct: 241 TLQPIRTLAPLLENVPPARLFDEVMKLLESGHGLACLQRLRHEGLHHGILP-----LLDT 295 Query: 246 LSQVIEA 252 L + EA Sbjct: 296 LFETDEA 302 >gi|110643300|ref|YP_671030.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 536] gi|123048854|sp|Q0TD50|CCA_ECOL5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|110344892|gb|ABG71129.1| tRNA nucleotidyltransferase [Escherichia coli 536] Length = 412 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRV-PSEIRDLARLVAEFHDLIHTFPMLNPKT 318 >gi|313891805|ref|ZP_07825410.1| putative tRNA adenylyltransferase [Dialister microaerophilus UPII 345-E] gi|313119799|gb|EFR42986.1| putative tRNA adenylyltransferase [Dialister microaerophilus UPII 345-E] Length = 490 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 88/292 (30%), Positives = 136/292 (46%), Gaps = 23/292 (7%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 +DS+ + +L ++ K ++ +GG VRD L+N D DI T+ +PD+++ I K Sbjct: 17 YDSNAVFLLEIIEKSGYEAYFIGGCVRDLLLNKKPSDWDITTSAMPDKIVEILHNFNVKT 76 Query: 71 IPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINAL 127 + YGT+ I +K ++ITT R D+ + V+FT + K D RRDFTINA+ Sbjct: 77 FDNAGMKYGTVSAIINEKIYEITTFRRDIYGQNSHLPDKVLFTENLKEDLSRRDFTINAM 136 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +D+ G + DY GG +DLR + +K +GD+ ED LR+ R RF D+D + Sbjct: 137 ASDRNGNIYDYFGGQSDLRRKILKTVGDSEKSFCEDALRLFRACRFLGQLN-FEPDNDLI 195 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI------------FKEIF 235 A A + LS ER+ EINKLL M + KEI Sbjct: 196 SAMPYAFYRVSGLSLERVKREINKLLLTDYASKGFDLMVRTKLNETRCSVKENGKLKEI- 254 Query: 236 LDVQEISLDQLSQVIEAEQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFS 286 L +LS +++ Q+ E + D+ +V + I A Sbjct: 255 -----DILPELSHLVDLPQMKEFHRFDAWKHSLVALDSSKPLLINRWAAFLH 301 >gi|256829240|ref|YP_003157968.1| polynucleotide adenylyltransferase region [Desulfomicrobium baculatum DSM 4028] gi|256578416|gb|ACU89552.1| Polynucleotide adenylyltransferase region [Desulfomicrobium baculatum DSM 4028] Length = 892 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 90/422 (21%), Positives = 172/422 (40%), Gaps = 22/422 (5%) Query: 13 SDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 D++++L L + + VGG VRD L+ + DID+ + Sbjct: 465 KDIVSLLQLAGQTGQELGVEVYAVGGFVRDMLLGIPNDDIDLVVEGDGIVFAQNLGHKLA 524 Query: 69 KVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + + + T +I + D+ T R + +V K D RRDF+IN L Sbjct: 525 ARVRSHLKFRTAVLILPSGQKIDVATARLEYYEYPAALPIVELSSLKMDLYRRDFSINTL 584 Query: 128 YAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-I 182 G+++D+ GG DL++ I+ + +ED RI+R RF + K Sbjct: 585 AIHLCPPHFGRLVDFFGGQQDLKDGVIRVLH--SLSFVEDPTRIIRAIRFEQRFQFKIGS 642 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-----FLD 237 ++ L+ + + LS RI E+ L E PL+A++ M + G+ +EI F Sbjct: 643 QTERLIKNAVRLNIFQKLSGARIRHELRLLAEDSAPLDALIRMRDLGLLQEIHPLLHFPQ 702 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 +E L+++ ++I ++ + ++ F+ L+S D + ++ + P + R Sbjct: 703 TKEALLEEIEKIITWYKLLFREESPDIWIVYFLGLVSGFDTHQVQALTSRLKFPPK-RTD 761 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 L+ + + + K D I L Y + + Sbjct: 762 LVESTRRQLRYVAMQLAQWGKNEGSLADLYEILSPLSLEGLLYTMAKQRKLELKKAISHY 821 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + H + +TG D+ + G+ PG + NIL K+ +N+ + +E L +++ S Sbjct: 822 LTHLQDVGILVTGSDIKEMGLEPGPQFANILRAVKRAVLNAEVRTREEQL-KYAKRMAGS 880 Query: 415 SQ 416 Q Sbjct: 881 LQ 882 >gi|324005362|gb|EGB74581.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 57-2] Length = 412 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMIHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|332998659|gb|EGK18255.1| poly A polymerase head domain protein [Shigella flexneri VA-6] Length = 412 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ LSV+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|308050920|ref|YP_003914486.1| poly(A) polymerase [Ferrimonas balearica DSM 9799] gi|307633110|gb|ADN77412.1| poly(A) polymerase [Ferrimonas balearica DSM 9799] Length = 449 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 16/236 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+K ++ +VGG VRD L++ +D D+AT P+++ ++F R Sbjct: 35 SENALKVLYRLHKAGYEAYLVGGGVRDLLLSHQPKDFDVATNATPEQIRKLFRNCRL--- 91 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRD 121 + I+ + ++ TLR GR + D+ RRD Sbjct: 92 -VGRRFRLAHILFGRDIIEVATLRGHHAESSDKHARADDSGRLLRDNVYGSIDEDAERRD 150 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+N LY D V DY GG+ DL+ R ++ IGD R ED +R+LR RF + Sbjct: 151 FTVNGLYYDIADYSVRDYFGGMADLKARRLRLIGDPETRYREDPVRMLRAVRFATKL-DF 209 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 ID+ + L + + R++ E KL A L+ M G+F +F Sbjct: 210 TIDTQTGKPIPALAELLSDIPAARLFEESLKLFLAGKALDNFRLMREYGLFAPMFP 265 >gi|311112586|ref|YP_003983808.1| tRNA adenylyltransferase [Rothia dentocariosa ATCC 17931] gi|310944080|gb|ADP40374.1| tRNA adenylyltransferase [Rothia dentocariosa ATCC 17931] Length = 474 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 91/441 (20%), Positives = 153/441 (34%), Gaps = 66/441 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV--QDIDIATTILPDRVMRIFSKTRYKV 70 D + + L + +VGG VRD L N D D+ T P + RI S + Sbjct: 12 PDAVELGELYRQAGFDLYLVGGLVRDELRNAPGEFTDFDMTTNATPAQSERILSAWGEHI 71 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 YGTI +++TT R+++ D R V F D KAD +RRDFTINA+ A Sbjct: 72 WDIGKEYGTISARKNGAVYEVTTYRAEVYVADSRKPTVEFGTDLKADLIRRDFTINAMAA 131 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+++D G DL ++ ED LR++R RF A + + + Sbjct: 132 ALPSGEIVDLFHGTKDLAEGVLRTPRSPQESFSEDPLRMMRAARFAARFN-LTVAPEVFE 190 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241 A + ++I+S+ER+ E+ KL+ A P + + G+ + ++ + Sbjct: 191 AMQQMASRIEIISAERVRDELIKLICADYPRVGLNLLVETGLADYVLPELPALRMEMDPS 250 Query: 242 ---------SLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSMAK------ 283 SL + Q IE E + D +LRF L+ K K Sbjct: 251 HHHKDVYEHSLKVMEQAIEKETAADGPCPAPDFVLRFASLLHDIGKPKTRRFEKDGSVSF 310 Query: 284 ----------------KFSLPREIRYFLISFFNCNFNQKTLSI----------------P 311 + + + Sbjct: 311 LQHDMVGARMVKKRMRALRFDNDTIKAVARLVELHMRFYGYREAGWTDSAVRRYVRDAGE 370 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++++L L V ++ +L + L ++ + L G+ ++ Sbjct: 371 QLQRLHRLSRSDVTTRNKRMARSLAQAYDDLERRIDELAAQEELDAMRPE---LDGEQIM 427 Query: 372 K-YGIPPGKKVGNILVHCKQE 391 + GI PG VG Sbjct: 428 EVLGIDPGPLVGQAYKFLLNL 448 >gi|147677571|ref|YP_001211786.1| hypothetical protein PTH_1236 [Pelotomaculum thermopropionicum SI] gi|146273668|dbj|BAF59417.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 873 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 84/403 (20%), Positives = 148/403 (36%), Gaps = 24/403 (5%) Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 + GG VRD L+ + DID+ + R + + + T ++ Sbjct: 473 NMGYRVYAAGGIVRDLLLGMECLDIDLVVEGDGIELARALGQDYGARVRVHQKFKTATVL 532 Query: 84 CRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDY 138 ++ D+ T R + + D RRDFTINA+ D G+V+D+ Sbjct: 533 LPGEWQVDVATARMEFYQYPAAMPQIEASSLHQDLYRRDFTINAMAVSLNRDDFGEVVDF 592 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKG 196 GG DL+ I+ + + +ED R+LR RF Y +++ L + +A K Sbjct: 593 FGGREDLQRGLIRVLHN--LSFVEDPTRLLRGIRFEKRYN-MSLEPQTLKLAQEAIRSKM 649 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----EISLDQLSQVIEA 252 L +S ERIW E+ +L P A+ + ++ +F V +D+L + I Sbjct: 650 LARVSRERIWEELKCILLEPRPGPALARLAELKLWDFLFPAVDYSKIAPVIDELPRSINF 709 Query: 253 EQ---VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-NCNFNQKTL 308 + V L+ F+ ++ D++S + + L R + + + L Sbjct: 710 LRSCNVPGIGETWLIYFLAVLHQMDRQSADEILSLYRLGRRQAEKIDAALGGWRDVVEGL 769 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 V + LA N + C +L +S ++G Sbjct: 770 RCHIATSGLARRLISVPTETYPLILAYLETNELRRRFCDVLTAVSC------EKPAISGK 823 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 D+ G PG L Q ++ QE+L + L Sbjct: 824 DLRHMGYRPGPAFKKALDAVWQARLDGIVSTRQEELEYAKEFL 866 >gi|323978871|gb|EGB73951.1| poly A polymerase head domain-containing protein [Escherichia coli TW10509] Length = 412 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|260580633|ref|ZP_05848460.1| polyA polymerase [Haemophilus influenzae RdAW] gi|260092695|gb|EEW76631.1| polyA polymerase [Haemophilus influenzae RdAW] Length = 480 Score = 242 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 61 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 118 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 119 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 176 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 177 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 236 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 237 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 295 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 296 SAYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 355 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 356 NNHDAYALAGNEVLDLFCRALAAPR 380 >gi|110806943|ref|YP_690463.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella flexneri 5 str. 8401] gi|122957198|sp|Q0T0K7|CCA_SHIF8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|110616491|gb|ABF05158.1| tRNA nucleotidyl transferase [Shigella flexneri 5 str. 8401] Length = 412 Score = 242 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ LSV+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|317178996|dbj|BAJ56784.1| poly(A) polymerase [Helicobacter pylori F30] Length = 409 Score = 242 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 167/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 7 EKELQELFEIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 66 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 67 ETGIKHGTITAFKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 126 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF G K + S A Sbjct: 127 SPTKGIIDPFKGQNAIENQMIECVGEARLRFFEDALRILRALRFSTTLGFKIVLS-TKEA 185 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 186 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEEIENLEFL 239 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 240 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKAFLNIY 287 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 288 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKRALKIKSLLKEISNANEPFKKEHLALKGG 346 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L ++ Sbjct: 347 TLQNLGYQR-QQIGEILNACLNLVIAHPENNSLEWLIKWVK 386 >gi|26249637|ref|NP_755677.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli CFT073] gi|227887779|ref|ZP_04005584.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 83972] gi|300973244|ref|ZP_07172083.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 45-1] gi|301048108|ref|ZP_07195146.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 185-1] gi|73619769|sp|Q8CXX6|CCA_ECOL6 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|26110065|gb|AAN82251.1|AE016767_11 tRNA nucleotidyltransferase [Escherichia coli CFT073] gi|227835175|gb|EEJ45641.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli 83972] gi|300300028|gb|EFJ56413.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 185-1] gi|300410824|gb|EFJ94362.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 45-1] gi|307555163|gb|ADN47938.1| multifunctional CCA protein [Escherichia coli ABU 83972] gi|315295022|gb|EFU54359.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli MS 153-1] Length = 412 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 84/362 (23%), Positives = 152/362 (41%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGD------KVMIAKLKI--------FLALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L +++L H + I+++ I W+K Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEILDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRK 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|261838119|gb|ACX97885.1| poly(A) polymerase [Helicobacter pylori 51] Length = 407 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 168/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 DKELKELFEIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKDLLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + Sbjct: 125 SPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFGATLGFKIV-PSTKRE 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 IFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLHYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKRALKIKTLLKEISNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L ++ Sbjct: 345 TLQNLGYQR-QQIGEILNACLNLVIAHPKNNSLEWLIKWVK 384 >gi|108802356|ref|YP_642553.1| metal dependent phosphohydrolase [Mycobacterium sp. MCS] gi|108772775|gb|ABG11497.1| metal dependent phosphohydrolase [Mycobacterium sp. MCS] Length = 455 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 166/453 (36%), Gaps = 58/453 (12%) Query: 21 LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTI 80 + + +VGG+VRD+L+ D+D T P+++ + T I +GT+ Sbjct: 1 MFAEAGHTLYLVGGSVRDALLGRLGTDLDFTTDARPEQMQAFLRPWADALWDTGIEFGTV 60 Query: 81 KIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKV 135 + +ITT R+D R V + + D +RRDFT+NA+ G+ Sbjct: 61 GVGKAGHRMEITTFRADSYDQVSRNPAVRYGDRLEDDLVRRDFTVNAMAVAITAAGPGEF 120 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 D +GGL LR + + +D LR+LR RF + G + A + Sbjct: 121 HDPLGGLAALRAKVLDTPSAPEVSFGDDPLRMLRAARFASQLG-FGVAPRVRTAMTEMAP 179 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQ----- 248 L ++ ER+ +E++KLL +P+ I M G+ + +V +++D+ Q Sbjct: 180 QLSRITVERVAAELDKLLLGADPVTGIDLMVQTGLGDVVLPEVGGMRLAIDEHHQHKDVY 239 Query: 249 -----VIEAEQVFEWKIDSLLRFIVLISWQDKKSIL------------------SMAKK- 284 V+ E D +LR+ L+ K + MA+K Sbjct: 240 WHSLTVLRQAIDLEDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGAKMARKR 299 Query: 285 ---FSLPREIRYFL-------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 +++ + + F + + Y+ ++ +L + Sbjct: 300 MRALKYSKQMVDDVSQLVFLHLRFHGYGDAKGPGKWTDSAVRRYVTDAGPLLDRLHKLVR 359 Query: 335 LHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVGN 383 + + D+ ++ L G+++++ IP G +VG Sbjct: 360 ADCTTRNKRRAARLQANYDDLERRIAELAAKEDLQRVRPDLDGNEIMRLLDIPAGPQVGE 419 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 H K+ + E + LL+ A + Sbjct: 420 AWRHLKELRLERGPLSHDEAVDELLKWWNAEPR 452 >gi|323188500|gb|EFZ73785.1| poly A polymerase head domain protein [Escherichia coli RN587/1] Length = 412 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPHHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|256826444|ref|YP_003150404.1| tRNA adenylyltransferase [Kytococcus sedentarius DSM 20547] gi|256689837|gb|ACV07639.1| tRNA adenylyltransferase [Kytococcus sedentarius DSM 20547] Length = 484 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 83/463 (17%), Positives = 161/463 (34%), Gaps = 64/463 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + +VGG VRD+ + + D+D+ T PD + ++ + Sbjct: 24 LTEVGERFAAAGYELALVGGPVRDAFLGRTSPDLDLTTDARPDDIEKVLAGWADATWDLG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 ++GTI + ++TT RSD+ R +V F D D +RRDFT+NA+ Sbjct: 84 RAFGTIGARKGETTLEVTTYRSDIYDRASRKPEVCFGHDLADDLVRRDFTVNAMALRLPD 143 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +D GGL L+ + +D LR++R RF A G + A Sbjct: 144 LGFVDPHGGLAALQAGELDTPTAPEESFADDPLRMMRACRFAAQLG-LVPSERVMDAMKD 202 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+I+S+ERI E KL+ + +P + + G+ +++ ++ + L++ + Sbjct: 203 MAPSLEIISAERIRDEFTKLILSDHPRAGLEVFVHTGLAEQVVPELPALQLER-DEHHRH 261 Query: 253 EQVFEWKI-----------------------DSLLRFIVLISWQDKKSILSM-------- 281 + V+E + D +LR L+ K + Sbjct: 262 KDVYEHSLIVLEQAMDLEGPREGAAEEVPHGDLVLRLAALLHDIGKPATRRFLPGGRVSF 321 Query: 282 --------------AKKFSLPREIRYFLISFFNCNFNQKTLSIPEI---KKLFYLYGDKV 324 + ++ ++ + E Y+ Sbjct: 322 HHHEIVGAKLARKRLRALRYDKDTIRDVVRLIELHLRFHGYGDGEWTDSAVRRYVTDAGP 381 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-Y 373 ++++L + + + Q + L G + + Sbjct: 382 LLSRLHLLTRADCTTRNQRKARRLAQTYDALEERIDRIQAEEELAAVRPDLNGHQISEVL 441 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 GIPPG +G H Q +++ + E LR+ A+ + Sbjct: 442 GIPPGPVLGEAYDHLLQFRLDAG-PVGPEAAAEELRRWWAARE 483 >gi|229815493|ref|ZP_04445824.1| hypothetical protein COLINT_02543 [Collinsella intestinalis DSM 13280] gi|229808930|gb|EEP44701.1| hypothetical protein COLINT_02543 [Collinsella intestinalis DSM 13280] Length = 481 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 88/463 (19%), Positives = 164/463 (35%), Gaps = 81/463 (17%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + +LS L ++ IVGG VRD+LM DIDI + + V+ + + Sbjct: 28 LTVLSALEGAGLEAWIVGGWVRDALMGAPGHDIDICCSGSWEESAAALRSRGIAVVESGV 87 Query: 76 SYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQG 133 +G I + ++T R D TDGR+ + V + D RRDFT+NA+ Sbjct: 88 KFGGITAVVDGARIEVTAYRLDGFYTDGRHPENVQRATCVEDDLARRDFTVNAMAWHPAR 147 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 ++D G DL R I+ +G+ R ED LR+LR RF + +D A + Sbjct: 148 GLLDCYDGRGDLERRQIRAVGEPRRRFEEDALRMLRAVRFACRL-DFAMDPATAQALAEC 206 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L ++ ER+ E+ +L ++ +A++ + ++ ++ +L+++ + Sbjct: 207 APLLDQVARERVGIELEGILVTRHGGDALIR----------YPELMCAAIPELARMRGFD 256 Query: 254 QVFEWK-------------------------------IDSLLRFIVLISWQDKKS----- 277 Q + L + L+ K Sbjct: 257 QRTPYHAFDVYDHTARVLTVAGELSRFRIDGGDPSAPPSPSLMWAALLHDIAKPDCFTVD 316 Query: 278 -----------------ILSMAKKFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKLF 317 + ++ S ++ LI +C N +S+ + F Sbjct: 317 ERGRGHFYGHPEAGAKLAEKIIRRLSCSNDLIRDVSLLIHDHDCPLNPDRISLLRQMQRF 376 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFI------------LQVLSDIIHWKKPLFPL 365 G ++ + L CF ++L++ + L Sbjct: 377 ARSGVDTARLMGELLDLKRADTLGKASGCFYYVEEIERMREMCRELLANREAYSIKTLDL 436 Query: 366 TGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G D++ G+ PG ++G L + I + +E L L Sbjct: 437 AGSDLIARGMAPGPRIGEALNRALEGAIVGAVANEREALLAYL 479 >gi|325001233|ref|ZP_08122345.1| tRNA adenylyltransferase [Pseudonocardia sp. P1] Length = 503 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 82/444 (18%), Positives = 158/444 (35%), Gaps = 66/444 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLM------NLSVQDIDIATTILPDRVMRIFSKTRY 68 + + + + +VGG+VRD+L+ + D+D T P+ ++ I Sbjct: 45 ADRLAARFAERGHRLYLVGGSVRDALLRGTGAADRDPGDLDFTTDARPETILEIVEGWAD 104 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINAL 127 + T I++GT+ + ++TT R+D R +V F + D +RRDFT+NA+ Sbjct: 105 AIWDTGIAFGTVGLRRGDDILEVTTFRADSYDGASRNPEVRFGDTVEGDLVRRDFTVNAM 164 Query: 128 YADQQG---KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 + G + +D GG L + +D LR+LR RF + G + Sbjct: 165 AVELTGPERRFVDPHGGFAALAQGILDTPDLPERSFADDPLRMLRAARFVSQLGFTPAER 224 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 A + L +++ER+ +E +KL+ +P + + + G+ + + +V ++ L+ Sbjct: 225 VT-AAMTEMAGELARITAERVQAEFSKLILGAHPRRGVELLCDTGLARHVVPEVPDMQLE 283 Query: 245 QLSQVIEA----------EQVFEWK---IDSLLRFIVLISWQDKKSILSMA--------- 282 + EQ E + D LR L+ K + Sbjct: 284 TDEHMQHKDVYTHSLVVMEQAIERETDGPDLTLRLAALLHDIGKPATRRKEPDGRVSFHH 343 Query: 283 -------------KKFSLPREIRYFLISFFNCNFNQK----------------TLSIPEI 313 + P+ + + + T + P + Sbjct: 344 HEVVGAKMTRKRMRALKYPKALIDDVSQLVYLHLRFHGYGKGEWTDSAVRRYVTDAGPLL 403 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +L L + AL N +D L+ ++ + L G+ +++ Sbjct: 404 DRLHDLVRSDCTTRNRRRAAALQRNYDGLEDRIAALREKEELDAIRPD---LDGNQIMEL 460 Query: 374 -GIPPGKKVGNILVHCKQEWINSS 396 GI PG VG H + Sbjct: 461 LGIAPGPAVGKAYKHLLALRMEEG 484 >gi|119773915|ref|YP_926655.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Shewanella amazonensis SB2B] gi|119766415|gb|ABL98985.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Shewanella amazonensis SB2B] Length = 424 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 125/317 (39%), Gaps = 28/317 (8%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L LNK ++ +VGG VRD L+ L +D D+ T P+ + ++F R + Sbjct: 2 LYRLNKAGYEAFLVGGGVRDLLLGLEPKDFDVVTNATPEDIKKLFRNCRL----VGRRFR 57 Query: 79 TIKIICRKKYFDITTLRSDLIT-----------DGRYAKVVFTRDWKADSLRRDFTINAL 127 I+ + ++ T R +GR + D+ RRDFT+NAL Sbjct: 58 LAHIVFGRDVIEVATFRGHHGNEDGDKISKANAEGRLLRDNVYGSIDEDAERRDFTVNAL 117 Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y D + Y GG+ DL + ++ IGD R ED +R++R RF G + I+ Sbjct: 118 YYDISDYSIRSYGGGMEDLNDGVLRLIGDPETRYREDPVRMIRAVRFATKLGMR-IEEVT 176 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245 K L+ + + R++ E+ KL A M +F IF + + D Sbjct: 177 AAPIRKLAPLLRDIPAARMYEEVLKLFFAGKGQANYQMMQEYQLFAPIFPLLADTIADSP 236 Query: 246 ----------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + + + + + + + L+ + K +A + L YF Sbjct: 237 KGHCARMVNLVMRNTDIRVMEDKPVTPAFFYAALLWYPLKSRAEEIANESGLSLYDAYFA 296 Query: 296 ISFFNCNFNQKTLSIPE 312 +T+S+P+ Sbjct: 297 AMGDVLEQQCQTISLPK 313 >gi|261839532|gb|ACX99297.1| tRNA CCA-pyrophosphorylase [Helicobacter pylori 52] Length = 402 Score = 242 bits (618), Expect = 9e-62, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 170/401 (42%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF A+ G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIENQIIECVGEARLRFFEDALRILRALRFSANLGFKIVLS-TKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 IFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L+ F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLALE-FYALKNPKHALKIKGLLKEIFNASEPFKKEHLALKGS 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + E L ++ Sbjct: 345 TLQSLGYQHQK-IGEILNACLDLVIAHPKNNALEWLIEWVK 384 >gi|324115361|gb|EGC09325.1| poly A polymerase head domain-containing protein [Escherichia fergusonii B253] gi|325498613|gb|EGC96472.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia fergusonii ECD227] Length = 412 Score = 242 bits (618), Expect = 9e-62, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 148/348 (42%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ LSV+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDDGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP +++ G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLHDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLAKLVAEFHDLIHTFPMLNPKT 318 >gi|300309964|ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum seropedicae SmR1] gi|300072749|gb|ADJ62148.1| tRNA nucleotidyltransferase/poly(A) polymerase protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 242 bits (618), Expect = 9e-62, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 12/225 (5%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + K+ IVGGAVRD L+ + +D D+AT P++V ++F + Sbjct: 57 LVSPNAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRA--- 113 Query: 70 VIPTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFT 123 + + ++ ++ ++TT R + GR + + D+ RRDFT Sbjct: 114 -FIIGRRFQIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFT 172 Query: 124 INALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INA+Y D + V+DY GG+ D+R++ ++ IG+ R ED +R+LR RF A + I Sbjct: 173 INAMYYDPASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKL-KFTI 231 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 D + + + R++ E+ KLL + + L + + Sbjct: 232 DPASSAPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRK 276 >gi|126666509|ref|ZP_01737487.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp. ELB17] gi|126628897|gb|EAZ99516.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp. ELB17] Length = 454 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 18/240 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +L LNK ++ +VGG VRD L++ +D DIAT P+ V +F +R Sbjct: 42 SEPAKKVLHRLNKAGYEAYLVGGGVRDILLSGQPKDFDIATDATPEEVHELFRNSRL--- 98 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD------------LITDGRYAKVVFTRDWKADSLR 119 + + ++ ++ ++TT R + G+ + + + D+LR Sbjct: 99 -IGRRFRIVHVVFGREVIEVTTFRGNANPADDDDDDRKTSEHGQLLRDNVYGNLEEDALR 157 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFTINALY VID+ G++DL NR ++ IGD R ED +R+LR RF A Sbjct: 158 RDFTINALYYCIRDFSVIDFANGIDDLNNRQMRLIGDPETRYREDPVRMLRAIRFAAKL- 216 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + I+ + L + + R++ E+ KL A + + + +F D Sbjct: 217 DFAIEPATEAPIRELAPLLTHIPAARLFDEVLKLFSAGYGEATFDKLRHYDLLAPLFPDT 276 >gi|85058468|ref|YP_454170.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84778988|dbj|BAE73765.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 470 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 148/395 (37%), Gaps = 47/395 (11%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L LNK + +VGG VRD L+ +D DI T+ P+++ ++F Sbjct: 44 TISRKEIS-ENALKVLYRLNKAGYVAYLVGGGVRDLLLGKKPKDFDITTSATPEQMRKLF 102 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD---------------LITDGRYAKVV 108 R + ++ + ++ T R +G + Sbjct: 103 RNCRL----VGRRFRLAHVMFGPEIIEVATFRGHHQVLEPEEGATGAALTGQNGMLLRDN 158 Query: 109 FTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 + D+ RRDF++N+LY + DY GGL DL+ TI+ IGD R ED +R+ Sbjct: 159 IFGSIEEDAQRRDFSVNSLYYSVADFTLRDYTGGLKDLQEGTIRLIGDPETRYREDPVRM 218 Query: 168 LRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 LR RF A + I + + L + R++ E KLL+A + Sbjct: 219 LRAVRFAAKL-DMTISRETAEPIPRLAALLHDIPPARLFEEALKLLQAGYGEATYHLLCE 277 Query: 228 GGIFKEIFLDV------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDK 275 +F+ +F + +++ + L+ + + + +++ F ++ + Sbjct: 278 YQLFQPLFPLISRNFTEHGDSYMEQMVIRVLANTDQRLRS-DMRVNPAFLFAAMLWYPLL 336 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDK 323 + + ++ L + L + +TL+IP+ +L G + Sbjct: 337 EHAQKLTQESGLSYFDAFSLAMNDILDKQCRTLAIPKRLTALMRDMWQLQLRLSRRQGKR 396 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 Y+ LT + L + W Sbjct: 397 AHKLMEHPKFRASYDLLTLRAEVEKNAELQRLSRW 431 >gi|312968601|ref|ZP_07782810.1| poly A polymerase head domain protein [Escherichia coli 2362-75] gi|312286819|gb|EFR14730.1| poly A polymerase head domain protein [Escherichia coli 2362-75] Length = 412 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSM S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMVAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRMPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|54294419|ref|YP_126834.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella pneumophila str. Lens] gi|53754251|emb|CAH15728.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella pneumophila str. Lens] Length = 423 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 14/237 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R Sbjct: 20 NALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----I 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYA--------KVVFTRDWKADSLRRDFTIN 125 + + I+ ++ ++ T R +D + + D+ RRDFTIN Sbjct: 76 GRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTIN 135 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 +LY + +ID+ GG+ D++ + I+ IGD R ED +R+LR RF A + N+ Sbjct: 136 SLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSP 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + K + +SS R++ EI KL + + + G+F +F + Sbjct: 195 ETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL 251 >gi|215488387|ref|YP_002330818.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli O127:H6 str. E2348/69] gi|254813691|sp|B7UIW4|CCA_ECO27 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|215266459|emb|CAS10897.1| fused tRNA nucleotidyl transferase/2'3'-cyclicphosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O127:H6 str. E2348/69] Length = 412 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSM S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMVAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|24114356|ref|NP_708866.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella flexneri 2a str. 301] gi|30064404|ref|NP_838575.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella flexneri 2a str. 2457T] gi|73619846|sp|Q821A6|CCA_SHIFL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|24053520|gb|AAN44573.1| tRNA nucleotidyl transferase [Shigella flexneri 2a str. 301] gi|30042661|gb|AAP18385.1| tRNA nucleotidyl transferase [Shigella flexneri 2a str. 2457T] gi|313648172|gb|EFS12618.1| poly A polymerase head domain protein [Shigella flexneri 2a str. 2457T] gi|332754636|gb|EGJ85002.1| poly A polymerase head domain protein [Shigella flexneri 2747-71] Length = 412 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ LSV+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYTAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+I L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIRTFPMLNPKT 318 >gi|307610237|emb|CBW99798.1| poly(A) polymerase [Legionella pneumophila 130b] Length = 423 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 14/237 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R Sbjct: 20 NALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----I 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYA--------KVVFTRDWKADSLRRDFTIN 125 + + I+ ++ ++ T R +D + + D+ RRDFTIN Sbjct: 76 GRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTIN 135 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 +LY + +ID+ GG+ D++ + I+ IGD R ED +R+LR RF A + N+ Sbjct: 136 SLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSP 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + K + +SS R++ EI KL + + + G+F +F + Sbjct: 195 ETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL 251 >gi|323141323|ref|ZP_08076218.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Phascolarctobacterium sp. YIT 12067] gi|322414210|gb|EFY05034.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Phascolarctobacterium sp. YIT 12067] Length = 506 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 93/487 (19%), Positives = 171/487 (35%), Gaps = 91/487 (18%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 F S ILS LN ++ +VGGAVRD L+ S D DI T LP++V+ + + Sbjct: 3 DLFFPSYTKKILSALNAAGYEAYLVGGAVRDLLLGKSPDDYDITTNALPEQVLAVCKQQD 62 Query: 68 YKVIP-TSISYGTIKIICRKKYFDITTLRSDLITD---GRYAKVVFTRDWKADSLRRDFT 123 +K + ++G + I+ ++TT R + D R A F + D RRDFT Sbjct: 63 WKTVDQLGHNFGCVVIVINGVATEVTTFRGERYNDEDMHRPAATWFCSSLREDLSRRDFT 122 Query: 124 INALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 +NA+ G + DY GG DL+ + ++ +GDA R ED LR+LR RF A G Sbjct: 123 VNAMALSLNGTLYDYFGGQQDLQQKILRTVGDAKQRFHEDALRMLRACRFVAQLGFTYEQ 182 Query: 184 S--DGLVASIKAK-------------KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 + + L A + LS ER+ E+ KL+ ++ ++ M Sbjct: 183 AGCETLPACGAPNTPYYLPHGYSFPVERCAGLSLERVRKELEKLITSEYAGKGLMLMMAT 242 Query: 229 GIFK--------------EIFLDVQEISLDQLSQVIEAEQVFEWKI--------DSLLRF 266 G+ I + + + +E + D +R+ Sbjct: 243 GLLGANCHARENGSDTIIPILPEALHLLGLHQNPRFHLYDTWEHTLLAIDNSPHDLAIRW 302 Query: 267 IVLISWQDK------------------------KSILSMAKKFSLPREIRYFLISFFNCN 302 +++ K ++ + + + + + Sbjct: 303 ALVLHDLGKGLPNVRKLNKEGQPSDPGHEAESAIMAKAILTRLGYNKSFVHLVTWLVAQH 362 Query: 303 FNQKTLSIPEIKKLF---------------------YLYGDKVMIAKLKIFLALHYNNLT 341 + + + L Y +V +A + A L Sbjct: 363 MRFAPMLLTGERTLLRWVRSEAANSGFRTQAELTQAYSLLVEVFLADMGATHARENEQLM 422 Query: 342 HQDTCFILQVLSDIIHWKKPL---FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 + QV+ + ++G ++++ + P + NIL + + + + Sbjct: 423 AEGRLLGRQVVELVRTRMPVCTKDLAVSGRELLE--LIPRADIKNILFYLLERVQSGNLP 480 Query: 399 LSQEDLH 405 +E L Sbjct: 481 NEKEALL 487 >gi|281602445|gb|ADA75429.1| Multifunctional CCA protein [Shigella flexneri 2002017] gi|332752729|gb|EGJ83114.1| poly A polymerase head domain protein [Shigella flexneri K-671] gi|333014921|gb|EGK34266.1| poly A polymerase head domain protein [Shigella flexneri K-304] Length = 412 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ LSV+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYTAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+I L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIRTFPMLNPKT 318 >gi|168231806|ref|ZP_02656864.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470503|ref|ZP_03076487.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456867|gb|EDX45706.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333820|gb|EDZ20584.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 413 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDVGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPVLQPKT 318 >gi|148359072|ref|YP_001250279.1| oly(A) polymerase [Legionella pneumophila str. Corby] gi|296107120|ref|YP_003618820.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy] gi|148280845|gb|ABQ54933.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella pneumophila str. Corby] gi|295649021|gb|ADG24868.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy] Length = 423 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 14/237 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R Sbjct: 20 NALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----I 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYA--------KVVFTRDWKADSLRRDFTIN 125 + + I+ ++ ++ T R +D + + D+ RRDFTIN Sbjct: 76 GRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTIN 135 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 +LY + +ID+ GG+ D++ + I+ IGD R ED +R+LR RF A + N+ Sbjct: 136 SLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSP 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + K + +SS R++ EI KL + + + G+F +F + Sbjct: 195 ETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL 251 >gi|317180474|dbj|BAJ58260.1| poly(A) polymerase [Helicobacter pylori F32] Length = 407 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 171/401 (42%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPYELYLVGGCVRDCLMGIAPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGLIDPFKGQNAIKNQMIECVGEARLRFFEDALRILRALRFSATLGFKIVLS-TKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEEIENLEFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLCYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L GD Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKHALKIKTLLKEIFNANEPFKKEHLALRGD 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L ++ Sbjct: 345 TLQNLGYQR-QQIGEILNACLNLVIAHPKNNSLEWLIKWVK 384 >gi|170766145|ref|ZP_02900956.1| multifunctional CCA protein [Escherichia albertii TW07627] gi|170125291|gb|EDS94222.1| multifunctional CCA protein [Escherichia albertii TW07627] Length = 412 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGGTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL + G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQNDDGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLVLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPHVFFQVLRDCGALRVLFPEIDVLF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLAKLVAEFHDLIHTFPMLNPKT 318 >gi|260857186|ref|YP_003231077.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O26:H11 str. 11368] gi|260869808|ref|YP_003236210.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O111:H- str. 11128] gi|257755835|dbj|BAI27337.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O26:H11 str. 11368] gi|257766164|dbj|BAI37659.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Escherichia coli O111:H- str. 11128] gi|323154511|gb|EFZ40711.1| poly A polymerase head domain protein [Escherichia coli EPECa14] gi|323178761|gb|EFZ64337.1| poly A polymerase head domain protein [Escherichia coli 1180] Length = 412 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPLTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|56415144|ref|YP_152219.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364073|ref|YP_002143710.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|73619839|sp|Q5PC82|CCA_SALPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702082|sp|B5BG15|CCA_SALPK RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|56129401|gb|AAV78907.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095550|emb|CAR61115.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 413 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYTAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|269797051|ref|YP_003316506.1| tRNA adenylyltransferase [Sanguibacter keddieii DSM 10542] gi|269099236|gb|ACZ23672.1| tRNA adenylyltransferase [Sanguibacter keddieii DSM 10542] Length = 488 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 87/461 (18%), Positives = 157/461 (34%), Gaps = 64/461 (13%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +++ + + +VGG VRD+ + S D+D AT+ PD +R+ + Sbjct: 20 APEAVDLGEVFAAAGHELALVGGPVRDAFLGRSSADLDFATSARPDETLRLLAAWGDAHW 79 Query: 72 PTSISYGTIKII------CRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTI 124 +GTI + ++TT R+D R VVF D RRDFT+ Sbjct: 80 DIGKEFGTIGAKRFARGGAPEVVVEVTTYRTDEYDPASRKPLVVFGDTLDGDLSRRDFTV 139 Query: 125 NALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NA+ +D GL DL ++ +A +D LR++R RF A G ++D Sbjct: 140 NAMAVRLPDLTFVDPHDGLTDLAREVLRTPIEAARSFDDDPLRMMRAARFAAQLG-FDVD 198 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------ 237 + A + I+S+ER+ E++KLL +++P + + G+ + + Sbjct: 199 PEADRAVRDMADRISIVSAERVRDELSKLLVSQHPRKGLHVLVETGLADHVLPELVGMKQ 258 Query: 238 ----------VQEISLDQLSQVIEAEQVFE---WKIDSLLRFIVLISWQDKKSILSM--- 281 V E SL L Q I+ E + D +LR L+ K + Sbjct: 259 AVDEHNRHKDVYEHSLTVLDQAIDLETDADGAVPGPDFVLRLAALLHDIGKPATRRFESN 318 Query: 282 ----------------AKKFSLPREIRY------FLISFFNCNFNQKTLSIPEIKKLFYL 319 AK+ R + L+ + + Y+ Sbjct: 319 GTVSFHHHEIVGAKLTAKRLRALRFDKETVSQVSRLVELHLRFHGYGDGAWTDSAVRRYV 378 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDD 369 ++ +L + + D+ L G Sbjct: 379 TDAGPLLERLHRLTRADCTTRNKRKAQRLSDAYDDLESRIEVLRGEEELASIRPDLDGQQ 438 Query: 370 VV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ + PG +VG + ++ L+R Sbjct: 439 IMDALSLTPGPEVGQAYRFLMELRLDRGPLGPDAARDELVR 479 >gi|152981224|ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Marseille] gi|151281301|gb|ABR89711.1| poly(A) polymerase [Janthinobacterium sp. Marseille] Length = 455 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 12/227 (5%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++ + + S L + K+ +VGGAVRD L+ + +D DIAT P++V R+F + Sbjct: 34 PKLVSANAVRVTSTLQQAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKRLFRRA- 92 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRD 121 + + ++ + ++TT R + GR + + D+LRRD Sbjct: 93 ---FIIGKRFQIVHVMFGQDLLEVTTFRGASTEAAPKDEHGRVLRDNTFGEQHEDALRRD 149 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y D + V+DY GG+ D+RN+T++ IG R ED +R+LR RF A Sbjct: 150 FTINAMYYDPATQTVLDYHGGMADIRNKTLRIIGVPEARYREDPVRMLRVVRFAAKLN-F 208 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 +ID D + + + R++ E+ KLL + + L + + Sbjct: 209 SIDPDTSAPIRVMAPLINNVPAARVFDEMLKLLMSGSALACLQQLRK 255 >gi|194431615|ref|ZP_03063906.1| multifunctional CCA protein [Shigella dysenteriae 1012] gi|194419971|gb|EDX36049.1| multifunctional CCA protein [Shigella dysenteriae 1012] gi|332086935|gb|EGI92070.1| poly A polymerase head domain protein [Shigella dysenteriae 155-74] Length = 412 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAYLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCDALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|296104714|ref|YP_003614860.1| tRNA nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059173|gb|ADF63911.1| tRNA nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 413 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 85/362 (23%), Positives = 156/362 (43%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P+ ++ + + P + + + Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPEEMLNAGYQQVGRDFPVFLHPQSRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINAL D+ G+++D GG Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEQDLLRRDLTINALAQDENGQIVDAYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DLRNR ++ + A ED LR+LR RF A Y + ++ L+ ++ L+ Sbjct: 114 DDLRNRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETMALMTAMTKAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G K +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALKVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ E + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPEVDVRFSTL----CHDLGKGLTPKEFWPRHH 271 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L +++L H I+++ +I W+K Sbjct: 272 GHGPAGVKLVEGLCQRLRVPNEIRDLAKLVAEFHDLIHTFPILKPATIVKLFDNIDAWRK 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|168262835|ref|ZP_02684808.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348429|gb|EDZ35060.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 413 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDVGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|110833201|ref|YP_692060.1| poly(A) polymerase [Alcanivorax borkumensis SK2] gi|110646312|emb|CAL15788.1| poly(A) polymerase [Alcanivorax borkumensis SK2] Length = 459 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 19/243 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +N+L L+KG ++ +VGG +RD L +D D++T P++V R+F ++R Sbjct: 42 SRAALNVLYGLHKGGFEAYLVGGCLRDILCGREPKDFDVSTNATPEQVQRLFKRSRI--- 98 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ +++T R+ D G + + D+L Sbjct: 99 -IGRRFQIVHVRFGREVIEVSTFRAKASDDNQDRNKHHAHEETGMVLRDNTWGSIEEDAL 157 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY + + D+VG + D+ TI+ IGD R ED +R+LR RF A Sbjct: 158 RRDFTINALYYNIADFSLHDFVGSMEDIDQETIRLIGDPEQRFREDPVRMLRAARFAAKL 217 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G I+ + L + S R++ E+ KL + + + + G+F+ +F + Sbjct: 218 G-FEIEKSTASRIPDMAELLLQVPSARLFDEVLKLFLSGHARASYEQLQELGLFRFLFPE 276 Query: 238 VQE 240 Q+ Sbjct: 277 TQQ 279 >gi|305681647|ref|ZP_07404453.1| tRNA adenylyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305658807|gb|EFM48308.1| tRNA adenylyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 506 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 86/460 (18%), Positives = 161/460 (35%), Gaps = 69/460 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + N +VGG+VRD+L+ D+D T P+ ++ I T Sbjct: 24 IQPLAAEFNTRGHHLYLVGGSVRDALLGRLGNDVDFTTDARPETILEILEHFADITWDTG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQQG 133 I YGT+ + +ITT RSD+ + R +VVF D +RRDFTINA+ + Sbjct: 84 IEYGTVSAEKSGQQIEITTFRSDIYDGESRNPEVVFGDTLAGDLVRRDFTINAMAVEITS 143 Query: 134 --------------KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 + D +GG DL I +D LR+LR RF + G Sbjct: 144 APDAAGATPAAAELEFFDPMGGFADLMKGVIDTPAAPDQSFADDPLRLLRAARFSSQLG- 202 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + A ++ ++ ER+ E++K+L P I M G+ +F ++ Sbjct: 203 FTVSDRVRAAMTDLASEIQRITVERVQVELDKMLLGAQPWLGIDLMVTTGLADYVFPELP 262 Query: 240 EISLDQLSQVIEAEQVFEW---------------KIDSLLRFIVLISWQDKKSILSMA-- 282 + L Q + + + V+ + D +LR+ L+ K Sbjct: 263 RLQLAQ-DEHHQHKDVYAHSLQVLRQAMDQEAAGEPDLVLRWAALVHDIGKPDTREFTED 321 Query: 283 --------------------KKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYL 319 +K + + + + S + Y+ Sbjct: 322 GRVSFHQHEVVGAKLVRNRMRKLKYSKAMVRDVSQLVYLHMRFHGFSEGQWTDSAVRRYV 381 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDD 369 ++ +L + + ++ Q+ + + K L G + Sbjct: 382 TDAGDLLPRLHKLVRADCTTRNKRKAAWLRQMYAQLEERIADLAAKEDLAKVRPDLDGKE 441 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ G+ PG VG + K+ + L +++ +L Sbjct: 442 IMAILGLQPGPDVGEAWSYLKEVRLERG-PLDRDEAIKVL 480 >gi|317402334|gb|EFV82909.1| Poly(A) polymerase [Achromobacter xylosoxidans C54] Length = 424 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 20/288 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ D GR + + D+ RRDFT+N Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASEDQETDAHGRILRDNVFGTHEEDAARRDFTMN 152 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VID+ G+ DL+ R I+ IGD R ED +R+LR RF A ID Sbjct: 153 ALYYDPHNEEVIDFHNGVADLKKRQIRMIGDPAKRYREDPVRMLRAVRFAAKLN-GTIDP 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----- 239 ++ + + R++ E+ KLL + ++ + + G+ + + Sbjct: 212 ATRQPIRTMADLIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHNGLLPLLDVVLEQ 271 Query: 240 ---EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 E ++ + +A I F L+ Q + + + Sbjct: 272 PGGEHFVELALERTDARVRAGKTISPSFLFAALLWQQVEVRWKQLRAQ 319 >gi|238898700|ref|YP_002924381.1| poly(A) polymerase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466459|gb|ACQ68233.1| poly(A) polymerase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 439 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 20/244 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D DI T PD+V +F R Sbjct: 17 SENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRELFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADS 117 + I+ ++ T R +G + + D+ Sbjct: 74 -IGRRFRLAHIMFGTDTIEVATFRGHHGLKSANQNTHSSQRAQNGMLLRDNIFGSIEEDA 132 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+N+LY + DY GGL D++ I+ IGD R ED +R+LR RF A Sbjct: 133 HRRDFTVNSLYYGIADFTLRDYTGGLKDIKQGLIRLIGDPEIRYPEDPVRMLRAVRFSAK 192 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I S+ + LK + R++ E KLL++ + + + +F +F Sbjct: 193 L-DMAISSETGKPIPRFAFLLKEVPGARLFEESLKLLQSGHGYKTYLKLCEYQLFPLLFP 251 Query: 237 DVQE 240 + Sbjct: 252 LIAR 255 >gi|213622159|ref|ZP_03374942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 335 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLTLMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDVGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPVGVKLVEQLCQRLRVPN-DLRDLAKLVAAYHDLIHTFPILQPKT 318 >gi|74313592|ref|YP_312011.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Shigella sonnei Ss046] gi|123616149|sp|Q3YXI6|CCA_SHISS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|73857069|gb|AAZ89776.1| tRNA nucleotidyl transferase [Shigella sonnei Ss046] gi|323168100|gb|EFZ53787.1| poly A polymerase head domain protein [Shigella sonnei 53G] Length = 412 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGA+RD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAIRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTDFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|330446882|ref|ZP_08310533.1| poly(A) polymerase I [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491073|dbj|GAA05030.1| poly(A) polymerase I [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 447 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 30/270 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R Sbjct: 17 SENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEEIKKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----------------------DGRYAKVVF 109 + I+ + ++ T R +G + Sbjct: 74 -IGRRFRLAHILFGRDIIEVATFRGHHSDAPVQATIPKDSKQKPQISSRNREGMLLRDNV 132 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 D+ RRDFTINALY + V DY G+ DL NR ++ +GD R ED +R+L Sbjct: 133 YGTIDEDAERRDFTINALYYSVKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVRML 192 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF + +ID + L+ + + R++ E KLL++ L + Sbjct: 193 RAVRFAVKL-DMDIDPATAAPIQELSSLLQDIPAARLFEESLKLLQSGQGLETYRMLREY 251 Query: 229 GIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +F+++F + + + Q + E++ E Sbjct: 252 NLFQQLFPLLADHFTE--DQSSQTEKMIEH 279 >gi|218701827|ref|YP_002409456.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Escherichia coli IAI39] gi|226702049|sp|B7NJR9|CCA_ECO7I RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|218371813|emb|CAR19668.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Escherichia coli IAI39] Length = 412 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQIGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|332999816|gb|EGK19400.1| poly A polymerase head domain protein [Shigella flexneri K-272] gi|333015684|gb|EGK35023.1| poly A polymerase head domain protein [Shigella flexneri K-227] Length = 412 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLLVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIHTFPMLNPKT 318 >gi|256829174|ref|YP_003157902.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028] gi|256578350|gb|ACU89486.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028] Length = 424 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 77/397 (19%), Positives = 154/397 (38%), Gaps = 45/397 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 V + H D + ++ L + + +VGG VRD L+ + +D D++T P ++ +IF Sbjct: 13 VSRQNIH-PDALKVMYRLVRKGFTAYLVGGGVRDLLLGRTPKDFDVSTNATPSQIKKIFQ 71 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRS-------DLITDGRYAKVVFTRDWKADS 117 + I + +T R + D + + D+ Sbjct: 72 N----YFLIGRRFRLAHIRFDDHVIETSTFRRCPDQEEENGDEDLYMLRDNCYGTPEEDA 127 Query: 118 LRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 LRRDFTIN L+ + ++ +ID+VGGL+D+ NR I+ IGD + R ED +R++R RF A Sbjct: 128 LRRDFTINGLFYEVERFSIIDHVGGLSDIENRLIRCIGDPNIRFREDPVRMIRAVRFAAR 187 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +I+ A ++ + + S R++ E+ KL + A+ +Y G+ + Sbjct: 188 L-DFHIEPATYNAIMRHHEEILKASPPRVFEELQKLFAYGSGEKAVRLLYKTGLLHNLLP 246 Query: 237 DV---------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS------- 280 ++ Q+ L + ++ K++ +L F L S + Sbjct: 247 EIADFLDHDHGQDSILWTWLEHLDRRIRTVGKVEPVLVFAALFSAPVRHIAARYEADGER 306 Query: 281 -------------MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA 327 + + S+P+ + +I + K ++ + Sbjct: 307 VVYNAMLEDLLQPICVRMSMPKWMCSRMIQIMANQTRFEPDKKKRFSKRGFV-AHECFPE 365 Query: 328 KLKIF-LALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 L ++ L L + + S++ + Sbjct: 366 TLALYQLGLLVSGADLGPAEMWGSLRSEMEAENPQVL 402 >gi|15599921|ref|NP_253415.1| poly(A) polymerase [Pseudomonas aeruginosa PAO1] gi|107103826|ref|ZP_01367744.1| hypothetical protein PaerPA_01004897 [Pseudomonas aeruginosa PACS2] gi|218893822|ref|YP_002442691.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58] gi|254238536|ref|ZP_04931859.1| poly(A) polymerase [Pseudomonas aeruginosa C3719] gi|254244371|ref|ZP_04937693.1| poly(A) polymerase [Pseudomonas aeruginosa 2192] gi|296391553|ref|ZP_06881028.1| poly(A) polymerase [Pseudomonas aeruginosa PAb1] gi|313109707|ref|ZP_07795647.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa 39016] gi|9950987|gb|AAG08113.1|AE004886_5 poly(A) polymerase [Pseudomonas aeruginosa PAO1] gi|126170467|gb|EAZ55978.1| poly(A) polymerase [Pseudomonas aeruginosa C3719] gi|126197749|gb|EAZ61812.1| poly(A) polymerase [Pseudomonas aeruginosa 2192] gi|218774050|emb|CAW29866.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58] gi|310882149|gb|EFQ40743.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa 39016] Length = 467 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 19/239 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-------------LITDGRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDAQ 154 Query: 119 RRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D + ++DY G++D+RNR I+ IGD R LED +R+LR RF A Sbjct: 155 RRDFTINALYFDVTSERLLDYANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ + L+ + S R++ E+ KL A + +F +F Sbjct: 215 -DFEIEKHSAAPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFP 272 >gi|145642144|ref|ZP_01797713.1| polyA polymerase [Haemophilus influenzae R3021] gi|145273135|gb|EDK13012.1| polyA polymerase [Haemophilus influenzae 22.4-21] Length = 509 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 72/366 (19%), Positives = 142/366 (38%), Gaps = 29/366 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 90 SRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 147 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 148 --VGRRFRLAHIMFGRDIIEVATFRANHNDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 205 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 206 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 265 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 266 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 324 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 325 SPYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYLLREKVEILKNEGGL 384 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 Y L + + L+ P + + LK + + H Sbjct: 385 NNHDAYALAGNEVLDLFCRALAAPRRHTAVIRDIWFLQLQLLKRTGSAPMRTMEHPKFRA 444 Query: 348 ILQVLS 353 +L+ Sbjct: 445 AFDLLA 450 >gi|333000116|gb|EGK19699.1| poly A polymerase head domain protein [Shigella flexneri K-218] Length = 412 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ LSV+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G++ID GL Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y G + D L+ + L+ Sbjct: 114 GDLQNRLLRHVSPA---FGEDPLRVLRVARFAARYAHLGFRIADETLTLMREMTHAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALF------GVPAPARWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPQVDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+I L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLARLVAEFHDLIRTFPMLNPKT 318 >gi|319948990|ref|ZP_08023091.1| polynucleotide adenylyltransferase [Dietzia cinnamea P4] gi|319437345|gb|EFV92364.1| polynucleotide adenylyltransferase [Dietzia cinnamea P4] Length = 542 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 82/456 (17%), Positives = 172/456 (37%), Gaps = 64/456 (14%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + + + +VGG+VRD+++ D+D T P+ V I + V T Sbjct: 65 LSPLAAAFGEAGHELYLVGGSVRDAVLGRLGTDLDFTTDARPEAVRGILDRYADAVWDTG 124 Query: 75 ISYGTIKIICRK-----KYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY 128 I +GT+ + R + +ITT R+D R +VV+ D +RRDFT+NA+ Sbjct: 125 IEFGTLSAVKRDGDGIEQQIEITTFRADSYDGVTRNPEVVYGDTLSGDLVRRDFTVNAMA 184 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 D + + +D + G++ L I +D LR+LR RF + G + Sbjct: 185 VRLHPDGRHEFVDPLNGMDALLAGVIDTPAAPEQSFADDPLRMLRACRFVSQLG-FTLAP 243 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 A + + +++ER+ +E++K + P++ I + G+ + +V + L+ Sbjct: 244 RVFRAMTEMTAEIDRITAERVRAELDKTILGDYPIDGINMLCETGLADHVLPEVPGMKLE 303 Query: 245 Q-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------- 277 + L+ + +A + D +LR+ L+ K + Sbjct: 304 RDEHMQHKDVYWHSLTVLKQAIDLEPEGPDLVLRWAALLHDIGKPATRAPKPGGGVTFHH 363 Query: 278 --------ILSMAKKFSLPREIRYFL--ISFFNCNFN---QKTLSIPEIKKLFYLYGDKV 324 + + P+++ + + F + F+ + + +++ G Sbjct: 364 HEVVGAKMVRKRMRALKYPKQMIEDVSGLVFLHLRFHGYGEGQWTDSAVRRYVSDAGH-- 421 Query: 325 MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-Y 373 ++ +L + + + + + L G++++ Sbjct: 422 LLPRLHRLVRADCTTRNRRRAAKLQANYDSLERRIAEIEEKEDLARVRPDLDGNEIMSLL 481 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G+ PG VG K+ ++ E LLR Sbjct: 482 GLGPGPDVGRAWAFLKELRLDRGPLDRDEAEAELLR 517 >gi|118620062|ref|YP_908394.1| poly(a) polymerase PcnA [Mycobacterium ulcerans Agy99] gi|118572172|gb|ABL06923.1| poly(a) polymerase PcnA [Mycobacterium ulcerans Agy99] Length = 481 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 88/453 (19%), Positives = 174/453 (38%), Gaps = 56/453 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTRYK 69 H + L + S +VGG+VRD+L+ D+D T P ++++I Sbjct: 21 HAAVLRELGSAFADAGHDLYLVGGSVRDALLGRLKSPDLDFTTDARPQQILKIVRPWADA 80 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALY 128 V T I +GTI I +ITT R+D R+ +V F + D +RRDFT+NA+ Sbjct: 81 VWDTGIEFGTIGIAKNDYRLEITTFRADSYDQVSRHPEVRFGERLEDDLVRRDFTVNAMA 140 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G+ +D +GGL+ LR++ + +D LR+LR RF + G + Sbjct: 141 VRITASGPGEFLDPLGGLSVLRDKVLDTPAAPSVSFGDDPLRMLRAARFVSQLG-FAVAP 199 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEIS 242 A + L +S+ER+ +E++KLL ++P+ I M + G+ + + ++ +++ Sbjct: 200 RVRDAIEEMAPQLARISAERVAAELDKLLLGEDPVAGIDLMVHTGMGEVVLPEIGGMQMA 259 Query: 243 LDQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------- 277 +D+ Q + +A ++ + D LR+ L+ K + Sbjct: 260 IDEHHQHKDVYQHSLTVLRQAIELEDEGPDLALRWAALLHDIGKPATRRHEANGGVSFHH 319 Query: 278 --------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMI 326 + + + +++ + + + Y+ ++ Sbjct: 320 HEVVGAKMVRNRMRALKYSKQMVDDVSQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGPLL 379 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVKY-GI 375 A+L + + + + + L G+ ++ I Sbjct: 380 ARLHKLVRADCTTRNKRRAARLQSSYDRLEERITELAAQEDLDRVRPDLDGNQIMTLLDI 439 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P G +VG + K+ + +E LL Sbjct: 440 PAGPQVGEAWRYLKELRLERGPLTIEEAKAELL 472 >gi|289642446|ref|ZP_06474591.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia symbiont of Datisca glomerata] gi|289507705|gb|EFD28659.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia symbiont of Datisca glomerata] Length = 539 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 92/476 (19%), Positives = 177/476 (37%), Gaps = 86/476 (18%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNL--SVQ-DIDIATTILPDRVMRIFSKTRYK 69 + + +VGG+VRD+L+ D+D AT P++++ I Sbjct: 23 PAADALGRVFADAGYSLYLVGGSVRDALLGRSGPSDADLDFATDARPEQILDIARAWADG 82 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY 128 V I++GT+ ++ F++TT R++ R V + + D +RRDFT+NA+ Sbjct: 83 VWEAGIAFGTVGLVRSGVRFEVTTYRTEAYDRTSRNPTVAYGDTLEGDLVRRDFTVNAMA 142 Query: 129 ADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 G + ID GGL DL + ++ G +D LRILR RF A G + + + Sbjct: 143 VSVPGHEFIDLFGGLGDLARKVLRTPGSPEASFDDDPLRILRAARFEAQLGLVPV-PELV 201 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A LKI+S ERI E+ KL+ A +P+ + + + G+ + ++ + + ++ Sbjct: 202 AAMRSRTPRLKIVSVERIRDELRKLMVAADPVAGLTRLVDVGVADIVLPELPALRM-EID 260 Query: 248 QVIEAEQVFEWK------------------------------IDSLLRFIVLISWQDKKS 277 + + + V+ D +LR+ L+ K Sbjct: 261 EHHQHKDVYAHTLTVLRQAIALEDPPPSGGPDALKDPPPSGGPDEVLRWAALLHDIGKPR 320 Query: 278 ----------------------ILSMAKKFSLPREIRYF--LISFFNCNFN---QKTLSI 310 P+++ L+ F + F+ + + Sbjct: 321 TRRHAPGGGVSFHHHEVVGRDMTRKRLAALRFPKDVADAITLLVFLHLRFHGYGRGEWTD 380 Query: 311 PEIKKLFYLYGDKVMI-------------AKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +++ + G ++ + LA Y+ L + + L++ Sbjct: 381 AAVRRYVHDAGPQLSRLHKLVRSDCTTRNRRKAEMLAATYDALEER-----IARLAEQEE 435 Query: 358 WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSF---QLSQEDLHHLLR 409 L+GDD++ G+ PG+ VG H + ++ +L R Sbjct: 436 IAAIRPELSGDDIMALLGLTPGRLVGQARAHMLDFRFEAGLVGRAAAEAELFRWAR 491 >gi|225010662|ref|ZP_03701132.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacteria bacterium MS024-3C] gi|225005215|gb|EEG43167.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacteria bacterium MS024-3C] Length = 475 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 83/433 (19%), Positives = 165/433 (38%), Gaps = 56/433 (12%) Query: 26 EDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKT--RYKVIPTSISYGTIKI 82 ++ ++GG VRD L+ S +DID+ + + S+ + +YGT + Sbjct: 26 GCEAYVIGGFVRDYLLERGSPKDIDVVVLGSGISLAKKLSEALPNSPEVTVFKNYGTAML 85 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDY 138 + + R + T VV + D RRDFTINAL D G ++D Sbjct: 86 KYQDLVLEFVGARKESYTHDSRNPVVENGSLEDDQNRRDFTINALAIGLNKDNYGVLVDP 145 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL+ L+N+ I +D LR+LR RF + ID++ L A + + Sbjct: 146 FNGLDALKNKRIVTPLSPGITFSDDPLRMLRAIRFASQLN-FTIDAEALEAITVQRDRIS 204 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 I+S ERI EINK++ + P+ M+ G+ I ++ + ++++ + + Sbjct: 205 IISKERIVDEINKMMSSPMPILGFELMHKTGLLPLILPELSALEGIEEVEGQKHKDNFWH 264 Query: 258 W----------KIDSLLRFIVLISWQDK----------------------KSILSMAKKF 285 + LR+ L+ K K + + K+ Sbjct: 265 TLEVVDNISKNTENVWLRWAALLHDIGKAPTKRFDKKIGWTFHGHEFIGSKMVYKLFKRL 324 Query: 286 SLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLYGDKV-----MIAKLKIFLA 334 +P + L+S + ++ +++L + G+ V + Sbjct: 325 HMPLNDKMKYVQKMVLMSSRPIVLAEDFVTDAAVRRLVFDAGEHVEDLMTLCEADITTKN 384 Query: 335 LHYNNLTHQDTCFILQVLSDI---IHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQ 390 + + + Q + ++ H + P++G++++ +G+ P K++G I K+ Sbjct: 385 PYKKKKYKNNFKIVRQKIEEVEARDHVRNFQPPVSGEEIMNTFGLKPSKEIGVIKEAIKE 444 Query: 391 EWINSSFQLSQED 403 + E Sbjct: 445 AILEGEIPNEYEA 457 >gi|187477229|ref|YP_785253.1| poly(A) polymerase [Bordetella avium 197N] gi|115421815|emb|CAJ48328.1| poly(A) polymerase [Bordetella avium 197N] Length = 452 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 12/222 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ + GR + + D+ RRDFT+N Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASAEQETDEHGRILRDNVFGSHEEDAARRDFTMN 152 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VIDY G+ DL+ R I+ IGD R ED +R+LR RF A ID Sbjct: 153 ALYYDPHTEEVIDYHNGVQDLKKRQIRMIGDPVTRYREDPVRMLRAVRFAAKLN-GTIDP 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + ++ + + R++ E+ KLL + ++ + + Sbjct: 212 ATRQPIATMAELIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253 >gi|260582019|ref|ZP_05849814.1| polyA polymerase [Haemophilus influenzae NT127] gi|260094909|gb|EEW78802.1| polyA polymerase [Haemophilus influenzae NT127] Length = 480 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 61 SRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 118 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D++R Sbjct: 119 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 176 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 177 RDFTVNALYYNPQDNTLRDYFEGIKDLKASKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 236 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 237 MF-LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 295 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 296 SPYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 355 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 356 NNHDAYALAGNEVLDLFCRALAAPR 380 >gi|52841768|ref|YP_095567.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628879|gb|AAU27620.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 436 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 14/237 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R Sbjct: 33 NALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----I 88 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYA--------KVVFTRDWKADSLRRDFTIN 125 + + I+ ++ ++ T R +D + + D+ RRDFTIN Sbjct: 89 GRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTIN 148 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 +LY + +ID+ GG+ D++ + I+ IGD R ED +R+LR RF A + N+ Sbjct: 149 SLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSP 207 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + K + +SS R++ EI KL + + + G+F +F + Sbjct: 208 ETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL 264 >gi|257125451|ref|YP_003163565.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leptotrichia buccalis C-1013-b] gi|257049390|gb|ACV38574.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leptotrichia buccalis C-1013-b] Length = 588 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 100/425 (23%), Positives = 167/425 (39%), Gaps = 48/425 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D+ IL LNK +VGGAVRD ++N D D AT I + RIF+ K Sbjct: 6 DKDVKFILKQLNKNG-TGFLVGGAVRDKILNKDPGDYDFATDIEYSELKRIFADYNPK-- 62 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 +G + I K ++I R + + ++ F + + D RRDFTIN+L Sbjct: 63 EMGAHFGILMIKVNGKSYEIAKFRKETGVYNSRYPKEIKFVKTIEEDLSRRDFTINSLAY 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++ ++D GG D++ + I+F+G RI ED LRILR FRF + G N+D A Sbjct: 123 NEETGIVDLYGGKQDIKRKVIRFVGKPKLRIEEDALRILRAFRFISKLG-FNLDKKTAEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 +K L +S ERI+ E++K+L A++ M + + I + + + Sbjct: 182 ICNKRKFLTKISKERIFDELSKILMGNFAKKALIEMKKLRVLEMIIPEFRYAYNFDQNNP 241 Query: 250 IEAEQVFEWKI--------DSLLRFIVLIS-------------------WQDKKSILSMA 282 I + +F I D + RF L +K+S L Sbjct: 242 IHTDDLFNHIIKVIHLCDYDLITRFAALFHDLGKINAKIIDAKGIFHFYGHEKESALIAE 301 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL-- 340 ++ + + + S N + K ++ LK L Y +L Sbjct: 302 EELRMLKASNETINSVKKIIKNHMLIYEDVSDKTLKKLIIEMEDKNLKRLFNLFYADLNS 361 Query: 341 -----THQDTCFILQVLSDIIHWKKP-------LFPLTGDDVVKYGIPPGKKVGNILVHC 388 ++ + I + KK +TG D++ +K+G + Sbjct: 362 KGIKSKKENEQILKNFWDKIENIKKQGKILQFNDLDITGIDLINLKFDN-RKIGEVKNRL 420 Query: 389 KQEWI 393 + Sbjct: 421 YDLVL 425 >gi|54310261|ref|YP_131281.1| putative polyA polymerase [Photobacterium profundum SS9] gi|46914702|emb|CAG21479.1| putative polyA polymerase [Photobacterium profundum SS9] Length = 449 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 32/272 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNKG + +VGG VRD L++ +D DIAT P+ + +F R Sbjct: 17 SENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQPKDFDIATNATPEEIKSLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------------------DGRYAKV 107 + I+ + ++ T R +G + Sbjct: 74 -IGRRFRLAHILFGRDVIEVATFRGHHSDVPAKVEIKDKADEKGKQQVSSKSQEGMLLRD 132 Query: 108 VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 D+ RRDFTINA+Y V DY G+ DL NR ++ +GD R ED +R Sbjct: 133 NVYGTIDEDAERRDFTINAMYYSAKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVR 192 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A + I+ + L+ + S R++ E KLL+A L + Sbjct: 193 MLRAVRFAAKL-DMTIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAGQGLATYKLLR 251 Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +F+++F + + + S + EQ+ E Sbjct: 252 QYNLFQQLFPILADHFTEDHSS--QTEQMIEH 281 >gi|208434561|ref|YP_002266227.1| poly(A) polymerase [Helicobacter pylori G27] gi|208432490|gb|ACI27361.1| poly(A) polymerase [Helicobacter pylori G27] Length = 402 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 169/401 (42%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI ++ + ++ITT R + I + K+VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITVLKNHQSYEITTFRIEKGHIKHRKPKKLVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+TI+ +G+A R ED LRILR RF A G K I + Sbjct: 125 SPTKGIIDPFKGQNAIENQTIECVGEARLRFFEDALRILRALRFSATLGFK-IAPNTKRV 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVIQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPLNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKHALKIKSLLKEIFNANEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + E L ++ Sbjct: 345 TLQSLGYQHQK-IGEILNACLNLVIAHPKNNALEWLIEWVK 384 >gi|168819731|ref|ZP_02831731.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343533|gb|EDZ30297.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087658|emb|CBY97422.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 413 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|168243033|ref|ZP_02667965.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168463585|ref|ZP_02697502.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442826|ref|YP_002042471.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449287|ref|YP_002047202.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197249983|ref|YP_002148134.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264081|ref|ZP_03164155.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198241760|ref|YP_002217185.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388245|ref|ZP_03214857.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354119|ref|YP_002227920.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858462|ref|YP_002245113.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226701743|sp|B5REG2|CCA_SALG2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702077|sp|B5F6A0|CCA_SALA4 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702078|sp|B5FHT9|CCA_SALDC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702079|sp|B5QZ40|CCA_SALEP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702080|sp|B4TI55|CCA_SALHS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702081|sp|B4T674|CCA_SALNS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|194401489|gb|ACF61711.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407591|gb|ACF67810.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633285|gb|EDX51699.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213686|gb|ACH51083.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242336|gb|EDY24956.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936276|gb|ACH73609.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605343|gb|EDZ03888.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273900|emb|CAR38901.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205337890|gb|EDZ24654.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206710265|emb|CAR34622.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624961|gb|EGE31306.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629238|gb|EGE35581.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 413 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|332995335|gb|AEF05390.1| poly(A) polymerase I [Alteromonas sp. SN2] Length = 438 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 117/315 (37%), Gaps = 34/315 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ LN +S +VGG VRD LM +D D+AT P+++ +F R Sbjct: 14 SPNALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVATNATPEQIKGLFRNCRL--- 70 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKV------------------VFTRDW 113 + I+ ++ ++ T R + +V Sbjct: 71 -IGRRFRLAHIVFGREVIEVATFRGHHSEEPEAKEVPKNKAVSKRDAHGQLVRDNVFGSI 129 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFT NA+Y V D+ GL + R ++ IGD R ED +R+LR R Sbjct: 130 EEDAERRDFTFNAMYYSVADFTVKDFANGLEAIEKREVRLIGDPEVRYREDPVRMLRAVR 189 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + D D + L + + R++ E KL + + + G+ Sbjct: 190 FATKLSMRISD-DTAAPIKQLASLLNNIPAARLFEETLKLFLSGQGEKTFLMLREYGLIA 248 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKID----------SLLRFIVLISWQDKKSILSMA 282 +F + D+ S+ ++ + D + L+ + ++ M Sbjct: 249 PLFPQLAPFIEDENSREMQFVRKVLQNTDERINNDQRVTPAFLYAALLWYPLEERAQIMQ 308 Query: 283 KKFSLPREIRYFLIS 297 + L + L S Sbjct: 309 AESGLSAHDAFNLAS 323 >gi|322613608|gb|EFY10549.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621200|gb|EFY18058.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624263|gb|EFY21097.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627999|gb|EFY24788.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633116|gb|EFY29858.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636306|gb|EFY33014.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643480|gb|EFY40042.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644801|gb|EFY41336.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648610|gb|EFY45057.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653662|gb|EFY49988.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657770|gb|EFY54038.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663871|gb|EFY60070.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669118|gb|EFY65269.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672889|gb|EFY68996.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678121|gb|EFY74184.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681297|gb|EFY77330.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687773|gb|EFY83740.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195585|gb|EFZ80762.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199734|gb|EFZ84824.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202518|gb|EFZ87558.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207994|gb|EFZ92940.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212454|gb|EFZ97271.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215064|gb|EFZ99812.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222794|gb|EGA07159.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224125|gb|EGA08418.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230449|gb|EGA14567.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235200|gb|EGA19286.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239240|gb|EGA23290.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244402|gb|EGA28408.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247019|gb|EGA30985.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253500|gb|EGA37329.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256194|gb|EGA39930.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262630|gb|EGA46186.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267275|gb|EGA50759.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269323|gb|EGA52778.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 413 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMRDMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|62181721|ref|YP_218138.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167551881|ref|ZP_02345634.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|224585007|ref|YP_002638806.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|73619836|sp|Q57JQ5|CCA_SALCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|254813697|sp|C0PYX7|CCA_SALPC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|62129354|gb|AAX67057.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205323384|gb|EDZ11223.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|224469535|gb|ACN47365.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716207|gb|EFZ07778.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 413 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|148825656|ref|YP_001290409.1| poly polymerase [Haemophilus influenzae PittEE] gi|148715816|gb|ABQ98026.1| probable poly polymerase [Haemophilus influenzae PittEE] Length = 514 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 95 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 152 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D++R Sbjct: 153 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 210 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 211 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 270 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 271 MF-LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 329 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 330 SPYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 389 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 390 NNHDAYALAGNEVLDLFCRALAAPR 414 >gi|225076461|ref|ZP_03719660.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens NRL30031/H210] gi|224952140|gb|EEG33349.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens NRL30031/H210] Length = 450 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 10/236 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + L++ ++ +VGGAVRD L+ + +D DIAT P+++ ++F ++R Sbjct: 40 AEKVAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKVFRRSRI----IG 95 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 96 RRFQIVHVMIGPETIEVTTFRGGNKVQQNAQGRIMKDNTYGSIEEDAMRRDFTCNALYYD 155 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++ D+ G+ D+ ++ + IGD R ED +RILR R G K ++ + Sbjct: 156 PIKEEIWDFHQGVADVADKKLVMIGDPAERYQEDPVRILRAVRLSGKLGFK-VEEQTALP 214 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + LK R++ EI K+L + + + + GI + I + + + Sbjct: 215 IAEYAGRLKNEPVARLFDEILKILFSGYSRACLKRLNDLGIPEGIHPLLDALKTAE 270 >gi|258515317|ref|YP_003191539.1| Polynucleotide adenylyltransferase region [Desulfotomaculum acetoxidans DSM 771] gi|257779022|gb|ACV62916.1| Polynucleotide adenylyltransferase region [Desulfotomaculum acetoxidans DSM 771] Length = 877 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 73/412 (17%), Positives = 157/412 (38%), Gaps = 20/412 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + GG VRD+L+ + D+D+ + R S+ + Sbjct: 466 LQEAGKTAAEMGYNVYTAGGIVRDALLGVESLDVDLVVEGNGILLARALSEKSGAFLRVH 525 Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129 +GT +I D+ T R + V + K D RRDFTINA+ Sbjct: 526 EKFGTAEICFPNGLQIDVATARVEFYEYPAALPEVESSSLKQDLYRRDFTINAMAVILGE 585 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGLV 188 ++ G +ID G +DL ++ + + +ED RILR RF Y + + L+ Sbjct: 586 ERFGDLIDPFDGRDDLYKGLVRVLHN--LSFVEDPTRILRALRFEQRYHMRIEQQTLSLL 643 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-DQLS 247 L+ +S ER+W E+ ++ NP+ + + ++ IF ++ + LS Sbjct: 644 RRAVKDGMLERVSVERLWEELKHIMAENNPVKILQRLAEVEAWQYIFPGIEYWDIQPVLS 703 Query: 248 QVIEAEQVF----EWKIDSLL-RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 + EA + + + + L ++ ++ ++ ++++L + Sbjct: 704 NLPEAIALLKEHGQPEPEPWLPYWLSILHRSQPAMAENLCQRYNLSKRQSVMTRQIVEML 763 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + L + KL + + L L +Q+ L+ + + Sbjct: 764 PDIVKLLQNKKIKLSEAADILLSVPVEAYALLLSLLPGDYQE-----HFLNLLEAMQTNK 818 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 + G+++ K G PG +L ++ ++ +++++ +++ + Sbjct: 819 PCIGGEEIKKLGYRPGPIYKQVLDALRRARLDGQINSTEDEIV-FVKEFLRE 869 >gi|311104114|ref|YP_003976967.1| poly(A) polymerase [Achromobacter xylosoxidans A8] gi|310758803|gb|ADP14252.1| poly(A) polymerase [Achromobacter xylosoxidans A8] Length = 454 Score = 240 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 20/288 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCEVLRQHGYDAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ + GR + + D+ RRDFT+N Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASEDQETDEHGRILRDNVFGSHEEDAARRDFTMN 152 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VID+ G+ DL+ R ++ IGD R ED +R+LR RF A ID Sbjct: 153 ALYYDPHNEEVIDFHNGVADLKKRQVRIIGDPAKRYREDPVRMLRAVRFAAKLN-GTIDP 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ----- 239 + + + + R++ E+ KLL + ++ + + G+ K + + Sbjct: 212 ATRQPISTMAELIDNVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHKGLLPLLDVVLEQ 271 Query: 240 ---EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 E ++ + +A I F L+ Q + + + Sbjct: 272 PGGEHFVELALERTDARVRSGKTISPSFLFAALLWQQVEARWKQLRAQ 319 >gi|227549419|ref|ZP_03979468.1| possible tRNA adenylyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227078496|gb|EEI16459.1| possible tRNA adenylyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 493 Score = 240 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 88/452 (19%), Positives = 169/452 (37%), Gaps = 59/452 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + +L + + +VGG VRD+++ D+D T+ P+ + I K T Sbjct: 36 LEPLAALFAQRGESLYLVGGPVRDAMLGRLGNDLDFTTSARPEVIAEILGSWGEKTWDTG 95 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD--- 130 I +GT+ I R + +ITT RSDL R +V F + D +RRDF NA+ + Sbjct: 96 IEFGTVSSIKRGQQVEITTFRSDLYDGVTRNPEVTFGDTLEGDLVRRDFACNAMAIELSL 155 Query: 131 QQGKV----IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + G + D VGGL+D+ +R + +D LR+LR RF + G D Sbjct: 156 RDGTLSPAFHDPVGGLDDILHRVLDTPQAPEISFRDDPLRMLRAARFASQLGFSVAD-RV 214 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-- 244 A + + ++ ER+ +E++KL+ P I + GI + I +V + L+ Sbjct: 215 FTAMCEMAGEINRITVERVQAELDKLMLGTLPWEGIDLLVETGIAQHILPEVPALQLETD 274 Query: 245 -----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------ 281 L+ + +A ++ + D LR+ L+ K + ++ Sbjct: 275 EHMQHKDVYRHSLTVLRQATELEDSGPDLELRWAALMHDIGKPATRAVKEGGGVSFHHHE 334 Query: 282 ----------AKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAK 328 + P+ + + + + Y+ ++ K Sbjct: 335 VVGAKMTRKRLRALKYPKHVIEDVGQLVYLHMRFHGFGEGQWTDSAVRRYVTDAGELLPK 394 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPP 377 L + + + + + + L G++++ G+ P Sbjct: 395 LHKLVRADSTTRNAKKAKRLQRTYDHLEERIDQIAAKEDLARVRPDLDGNEIMSILGLSP 454 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G +VG K+ + L ++ L+ Sbjct: 455 GPEVGKAWNFMKELRLERG-SLEHDEAVAELK 485 >gi|294674522|ref|YP_003575138.1| polyA polymerase family protein [Prevotella ruminicola 23] gi|4204222|dbj|BAA74513.1| polyA polymerase [Prevotella ruminicola] gi|294474228|gb|ADE83617.1| polyA polymerase family protein [Prevotella ruminicola 23] Length = 479 Score = 240 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 82/466 (17%), Positives = 169/466 (36%), Gaps = 68/466 (14%) Query: 10 FHDSDLINIL---------SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + D +L IL ++ + +VGG VRD + DID+ +V Sbjct: 4 YSDEELAEILNQDIFHQISEAADRLGLECYVVGGYVRDIFLERPSNDIDVVVVGSGIKVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIIC----RKKYFDITTLRSDLITDGRYAKVVFTRDWK 114 + K ++GT ++ + + R + + +V + Sbjct: 64 EELKRIVGKKAHLSVFKNFGTAQVKFWQKGTEYEVEFVGARKESYSHDSRKPIVENGTLE 123 Query: 115 ADSLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 D RRDFTINA+ ++ G+++D GL DL + I + +D LR++R Sbjct: 124 DDQNRRDFTINAMAICLNKERFGELVDPFNGLADLEDGIIATPLEPGITFSDDPLRMMRC 183 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + I+ + VA + +KI+S ERI E+NK++ +K P V + G+ Sbjct: 184 IRFATQLNFQ-IEEETFVALERMADRIKIVSGERIKDELNKIILSKTPSRGFVDLQRCGL 242 Query: 231 FKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL-----------LRFIVLISWQDKKSIL 279 I ++ + + + + F ++ L LR+ L+ K Sbjct: 243 LNIILPELSALDIVEQKNGRAHKNNFYHTLEVLDNVAMHSDNLWLRWAALLHDVGKTKSK 302 Query: 280 ----SMAKKFSLPREIRYFLI-SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 ++ F I ++ F + + ++KL ++ ++IA + + Sbjct: 303 RWDAAIGWTFHNHNMIGAKMVPQIFRRLMLPLDMKMKYVQKLVDMHMRPIVIADEIVTDS 362 Query: 335 LHYNNLTHQDT-------------------------------CFILQVLSDIIHWKKPLF 363 + L L + + + Sbjct: 363 AVRRLMNDAGEDIEDLMTLCEADITSKNEVRKKMFLENFRMVREKLTDLKEKDYVRLLQP 422 Query: 364 PLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + G+++++ + P ++VG + + K +++ + +E L LL Sbjct: 423 VIDGNEIMEMFHLQPCREVGVLKQYLKDAVLDNKVENEREPLMALL 468 >gi|299141232|ref|ZP_07034369.1| polyA polymerase family protein [Prevotella oris C735] gi|298577192|gb|EFI49061.1| polyA polymerase family protein [Prevotella oris C735] Length = 483 Score = 240 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 83/472 (17%), Positives = 177/472 (37%), Gaps = 72/472 (15%) Query: 10 FHDSDLINILS-----LLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 D+DL +L+ L+++ D + +VGG VRD + DID+ +V Sbjct: 4 LTDADLARLLNKDIFHLISEAADKLALECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + ++GT ++ + R + + V + D Sbjct: 64 SELKNRLGRRAHLSVFRNFGTAQVKYGGMEIEFVGARKESYSHDSRKPHVEDGTLEDDQN 123 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL + G+++D G+ D+ + I+ D +D LR++R RF Sbjct: 124 RRDFTINALAVCLNKEHFGQLVDPFDGVYDMEDGIIRTPLDPDITFSDDPLRMMRCIRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + + +KI+S ERI E+NK++ + P + +Y G+ + I Sbjct: 184 TQLNFF-IEDETFEALQRNAERIKIISGERIDDELNKIMLTQTPSKGFIDLYRCGLLQLI 242 Query: 235 FLDVQEI-----------------SLDQLSQVIEAEQVFE--WKIDSLLRFIVLISWQDK 275 ++ + +L+ L + +A+ ++ LR+ L K Sbjct: 243 IPELVTLDVVETRNGRAHKNNFYHTLEVLDNLCKAQTDNGKLGEMALWLRWSALFHDIGK 302 Query: 276 KSILS----------------------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE 312 + ++ LP + + ++ + + ++ E Sbjct: 303 PRCKRWDNVIGWSFHNHNYVGAKMIPGIFRRMKLPMDSKMKYVQKMVDLHMRPIVIADEE 362 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD------------IIHWKK 360 + + + L ++T ++ + L + + +K+ Sbjct: 363 VTDSAVRRLMNDAGDDIDDLMMLCEADITSKNQVRKQRFLDNFRIVREKIADLKVRDYKR 422 Query: 361 PLFP-LTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 L P + G+++++ + P ++VG + K +++ + +E L LL K Sbjct: 423 LLQPCIDGNEIMEMFHLGPCREVGQLKQTLKDAVLDNKVENEREPLMQLLMK 474 >gi|116052874|ref|YP_793191.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588095|gb|ABJ14110.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14] Length = 467 Score = 240 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 19/239 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-------------LITDGRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDAQ 154 Query: 119 RRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D + ++DY G++D+RNR I+ IGD R LED +R+LR RF A Sbjct: 155 RRDFTINALYFDVTSERLLDYANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ + L+ + S R++ E+ KL A + +F +F Sbjct: 215 -DFEIEKHSATPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFP 272 >gi|281423703|ref|ZP_06254616.1| polyA polymerase family protein [Prevotella oris F0302] gi|281402255|gb|EFB33086.1| polyA polymerase family protein [Prevotella oris F0302] Length = 483 Score = 240 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 84/472 (17%), Positives = 178/472 (37%), Gaps = 72/472 (15%) Query: 10 FHDSDLINILS-----LLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 D+DL +L+ L+++ D + +VGG VRD + DID+ +V Sbjct: 4 LTDADLARLLNKDIFHLISEAADKLALECYVVGGYVRDLFLERPSNDIDVVVVGSGIQVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + ++GT ++ + R + + V + D Sbjct: 64 SELKNRLGRRAHLSVFRNFGTAQVKYGGMEIEFVGARKESYSHDSRKPHVEDGTLEDDQN 123 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL + G+++D G+ D+ + I+ D +D LR++R RF Sbjct: 124 RRDFTINALAVCLNKEHFGQLVDPFDGVYDMEDGIIRTPLDPDITFSDDPLRMMRCIRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 I+ + A + + +KI+S ERI E+NK++ + P + +Y G+ + I Sbjct: 184 TQLNFF-IEDETFEALQRNAERIKIISGERIDEELNKIMLTQTPSKGFIDLYRCGLLQLI 242 Query: 235 FLDVQEI-----------------SLDQLSQVIEAEQVFE--WKIDSLLRFIVLISWQDK 275 ++ + +L+ L + +A+ ++ LR+ L K Sbjct: 243 IPELVALDVVETRNGRAHKNNFYHTLEVLDNLCKAQTDNGKLGEMALWLRWSALFHDIGK 302 Query: 276 KSILS----------------------MAKKFSLPREIR-YFLISFFNCNFNQKTLSIPE 312 + ++ LP + + ++ + + ++ E Sbjct: 303 PRCKRWDNVIGWSFHNHNYVGAKMIPGIFRRMKLPMDSKMKYVQKMVDLHMRPIVIADEE 362 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD------------IIHWKK 360 + + + L ++T ++ + L + + +K+ Sbjct: 363 VTDSAVRRLMNDAGDDIDDLMMLCEADITSKNQVRKQRFLDNFRIVREKIADLKVRDYKR 422 Query: 361 PLFP-LTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 L P + G++++ K+ + P ++VG + K +++ + +E L LL K Sbjct: 423 LLQPCIDGNEIMEKFHLGPCREVGQLKQTLKDAVLDNKVENEREPLMQLLMK 474 >gi|311278031|ref|YP_003940262.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Enterobacter cloacae SCF1] gi|308747226|gb|ADO46978.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Enterobacter cloacae SCF1] Length = 412 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 94/431 (21%), Positives = 172/431 (39%), Gaps = 76/431 (17%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+ L V+D D + P +++ + + P + + Sbjct: 4 FLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHP--------DSH 55 Query: 89 FDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + Y + D LRRD T+NAL D G VID GG D Sbjct: 56 EEYALARTERKSGSGYTGFTCYAAPDVTLEQDLLRRDLTVNALAQDDDGTVIDPYGGQRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR ++ + A ED LR+LR RF A Y + ++ L+ + A L L Sbjct: 116 LQNRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETMTLMRDMTAAGELAHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E L +NP + + G K +F +V + + A + +I Sbjct: 173 TPERVWKETESALTTRNPQVYFQTLRDCGALKVLFPEVDALY------GVPAPAKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ L+MA S ++R+ + C+ K L+ + + Sbjct: 227 DTGVHTLM---------TLTMAAMLSPAVDVRFATL----CHDLGKGLTPKAFWPRHHGH 273 Query: 321 GD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 G + + A+L++ L +++L H I+++ I W+KP Sbjct: 274 GPAGVKLVEQLCARLRVPNEIRDLAKLVAEFHDLIHTFPILKPATIVKLFDAIDAWRKPQ 333 Query: 363 FP----------LTGDD-VVKYGIPPGKKVGNILVHCK----QEWINSSFQLS--QEDLH 405 + G P G+ + + + I++ F+ + +E+L Sbjct: 334 RVEQIALTSEADVRGRTGFEACDYPQGRLLREAWEVARAVPTKAVIDAGFKGAEVREELT 393 Query: 406 HLLRKLIASSQ 416 R++ A +Q Sbjct: 394 R--RRIQAVAQ 402 >gi|145630638|ref|ZP_01786417.1| polyA polymerase [Haemophilus influenzae R3021] gi|144983764|gb|EDJ91214.1| polyA polymerase [Haemophilus influenzae R3021] Length = 452 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SPYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + +TL+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRTLAAPR 352 >gi|329123092|ref|ZP_08251662.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116] gi|327471647|gb|EGF17089.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116] Length = 480 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 61 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 118 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 119 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 176 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 177 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 236 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 237 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGRGVKTYRLLRQYGLFEQLFPAL 295 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 296 SSYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 355 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 356 NNHDAYALAGNEVLDLFCRALAAPR 380 >gi|295099606|emb|CBK88695.1| tRNA nucleotidyltransferase/poly(A) polymerase [Eubacterium cylindroides T2-87] Length = 436 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 96/442 (21%), Positives = 173/442 (39%), Gaps = 61/442 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ + ++ ++ +VGG VRD L+ D DIAT LP+ +++F VI T Sbjct: 7 VKEIIEIYHRAGYEAFVVGGCVRDYLLGKEPHDYDIATNALPEVTIQLFD----HVILTG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ I+ + ++TT R + D R+ + V F + D RRDFTINA+ + Sbjct: 63 LKHGTVTILSN-EPVEVTTFRLESEYKDHRHPETVRFVNTIEEDLSRRDFTINAMAYNDI 121 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID G DL R I+ + D R ED LR+LR RF A I+ +A K Sbjct: 122 RGLIDPFHGQIDLEKRKIRCVNDPDTRFKEDALRMLRAHRFAAKLN-FEIEEHTKLAIEK 180 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 L+ +S ERI E+ +++ +P + +M + +I +++ + + Sbjct: 181 NSSLLRYISIERIRLELVEIMRY-DPYE-LENMTE--LLIDILPQLKQCKECEQNSPWHD 236 Query: 253 EQVFEWKIDSL---------LRFIVLISWQDKKSI---------------------LSMA 282 V + +L L + +L+ K L + Sbjct: 237 TDVLHHTLRALKFLKPFDETLAWAILMHDFGKPETKTTKDGRDHFYGHPLISKKISLELC 296 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYNNLT 341 KKF L R + + + ++ I K D+ M+ +L L L Y ++ Sbjct: 297 KKFKLTNIQRKRIPVLIEYHDDHLNANLKTIFKFRIQRNFDEEMMDQL---LTLKYCDIM 353 Query: 342 HQDTCFILQVLSD------------IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 I + + I + G DV++Y G I Sbjct: 354 AHSLKGIQSIENWKAFKTFYEKEIKIRPVSIKDLAINGSDVIQYTDRKG---SQIHEFLY 410 Query: 390 QEWINSSFQLSQEDLHHLLRKL 411 I ++ + + + + ++ Sbjct: 411 NALIECFYEPQKNNRKYWIDRM 432 >gi|168238165|ref|ZP_02663223.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736807|ref|YP_002116161.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226702083|sp|B4TVT8|CCA_SALSV RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|194712309|gb|ACF91530.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289027|gb|EDY28398.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 413 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLSLMRDMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|307249388|ref|ZP_07531380.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858574|gb|EFM90638.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 510 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 150/423 (35%), Gaps = 53/423 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L + ++ +VGG +RD L+ +D D+AT P+ + +IF + R Sbjct: 85 KNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPEEIQKIFGRQCRL--- 141 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ + +++ T R+D + +G + + D+ RR Sbjct: 142 -IGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNVYGTLREDAQRR 200 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++N+LY D + +I D+ G+ DL+ + IGD R ED +R+LR RF A Sbjct: 201 DFSVNSLYYDPKHNLIFDFFDGIADLKAGKLHLIGDPVVRYQEDPVRMLRAVRFMAKLDM 260 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D + LK + + R++ E KL ++ M G+F+ +F + Sbjct: 261 F-LDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQLMRQYGLFEPLFPVLT 319 Query: 240 EISLDQLSQVIEAEQVF-----------EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 ++ E +++ F L+ + ++ + + + L Sbjct: 320 PFFTERNDSNAERMLSKALNSTDDRIRDNLRVNPAFLFAALLWYPLREKMEVLKNEGGLN 379 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 L + N + L + + F + Q T Sbjct: 380 SHDAMMLAA------NDVLAESCKAIALHRRHTSVIRDIWALQFQMTKRSGKRPQQTLEH 433 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLHH 406 ++ + + G D+V W F + ++ Sbjct: 434 VKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNDAQRAEMLK 477 Query: 407 LLR 409 +R Sbjct: 478 AVR 480 >gi|301155973|emb|CBW15443.1| poly(A) polymerase I [Haemophilus parainfluenzae T3T1] Length = 419 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 74/368 (20%), Positives = 147/368 (39%), Gaps = 29/368 (7%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRY 68 + I ++ L + + IVGG +RD L+ +D D+AT PD++ +F + R Sbjct: 1 MFSRNAITVVEKLQRQGYDAYIVGGCLRDLLLGKHPKDFDVATNARPDQIQAVFQRQCRL 60 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADS 117 + I+ + ++ T R+ +G + + D+ Sbjct: 61 ----VGRRFRLAHIMFGRDVIEVATFRASHSDARSENQAKQSDEGMLLRDNVYGTIEQDA 116 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NALY + + DY G++DL+N ++ IGD R ED +R+LR RF A Sbjct: 117 ERRDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSVRFMAK 176 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 ++ + LK + R++ E KLL++ N + + G+F+++F Sbjct: 177 LDMF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQSGNGVKTYKLLRQYGLFEQLFP 235 Query: 237 DVQEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKF 285 + ++ + E E++ + +I+ F + ++ + + + Sbjct: 236 SLTPYFTEKEDSLAERMILTSLNSTDERIADKLRINPAFLFAAFFWYPLREKVDVLKNEG 295 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 L Y L + + ++L+ P + + LK + + HQ Sbjct: 296 GLNNHDAYALAANEVLDQLCRSLAAPRRHTSVIRDIWMLQLQLLKRTGSHPARTMEHQKF 355 Query: 346 CFILQVLS 353 +L+ Sbjct: 356 RAAFDLLA 363 >gi|16272037|ref|NP_438236.1| polyA polymerase [Haemophilus influenzae Rd KW20] gi|1172043|sp|P44439|PCNB_HAEIN RecName: Full=Probable poly(A) polymerase; Short=PAP gi|1573011|gb|AAC21741.1| poly(A) polymerase (pcnB) [Haemophilus influenzae Rd KW20] Length = 452 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SAYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|90412020|ref|ZP_01220027.1| putative polyA polymerase [Photobacterium profundum 3TCK] gi|90326998|gb|EAS43377.1| putative polyA polymerase [Photobacterium profundum 3TCK] Length = 449 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 32/272 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNKG + +VGG VRD L++ +D DIAT P+ + +F R Sbjct: 17 SENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQPKDFDIATNATPEEIKSLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------------------DGRYAKV 107 + I+ + ++ T R +G + Sbjct: 74 -IGRRFRLAHILFGRDVIEVATFRGHHSDAPVKVEIKDKADAKGKQQISSKSQEGMLLRD 132 Query: 108 VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 D+ RRDFTINA+Y V DY G+ DL NR ++ +GD R ED +R Sbjct: 133 NVYGTIDEDAERRDFTINAMYYSAKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVR 192 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A + I+ + L+ + S R++ E KLL+A L + Sbjct: 193 MLRAVRFAAKL-DMTIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAGQGLATYKLLR 251 Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +F+++F + + + S + EQ+ E Sbjct: 252 QYNLFQQLFPILADHFTEDHSS--QTEQMIEH 281 >gi|329121121|ref|ZP_08249752.1| poly A polymerase [Dialister micraerophilus DSM 19965] gi|327471283|gb|EGF16737.1| poly A polymerase [Dialister micraerophilus DSM 19965] Length = 301 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 11/285 (3%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 +DS+ + +L ++ K ++ VGG VRD L+N D DI T+ +PD++ I K Sbjct: 17 YDSNAVFLLEIIEKSGYEAYFVGGCVRDLLLNKKPSDWDITTSAIPDKIAEILHNFNVKT 76 Query: 71 IPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINAL 127 + YGT+ I +K ++ITT R D+ + V FT + K D RRDFTINA+ Sbjct: 77 FDNAGMKYGTVSAIINEKIYEITTFRRDIYRQNSHLPDKVFFTENLKEDLSRRDFTINAM 136 Query: 128 YADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +D+ G + DY GG +DL+ + +K +GD+ ED LR+ R RF D+D + Sbjct: 137 ASDRNGNIYDYFGGQSDLQRKILKTVGDSEKSFCEDALRLFRACRFLGQLN-FEPDNDLI 195 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI------FKEIFLDVQEI 241 A A + LS ER+ EINKL+ M + KE + Sbjct: 196 SAMPYAFYRVSGLSLERVKREINKLVLTDYASKGFDLMVRTKLNETRCSVKENGKSKEID 255 Query: 242 SLDQLSQVIEAEQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKF 285 L +LS +++ Q+ E + D+ +V + I A F Sbjct: 256 ILPELSHLVDLPQMKEFHRFDAWKHSLVALDSSKPLLINRWAAFF 300 >gi|192359588|ref|YP_001980912.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107] gi|190685753|gb|ACE83431.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107] Length = 457 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 14/235 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I+ L++ ++ +VGG VRD L+ +D D+AT P+ V R+F R Sbjct: 48 ALKIIKQLHEAGFEAYLVGGGVRDLLLGGHPKDFDVATNAKPEEVRRLFRGARI----VG 103 Query: 75 ISYGTIKIICRKKYFDITTLRSD--------LITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + + ++ ++TT R DG + + D++RRDF++NA Sbjct: 104 RRFQIVHVRIGREMIEVTTFRGHHDEDLNHTRNEDGMLLRDNVYGTLETDAMRRDFSVNA 163 Query: 127 LYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D + +IDY GG+ DL+ RT++ IG+ R ED +RILR RF A G ++ Sbjct: 164 LYYDLKTFSIIDYCGGMEDLKKRTLRIIGEPVTRYKEDPVRILRALRFAAKLG-FALEPS 222 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 L +S R++ E+ KL + M + +++F E Sbjct: 223 TAKPIRPLGNLLLNVSEARLFEEVLKLFLNGSATATFNLMREYDLLQQLFPGTDE 277 >gi|148827216|ref|YP_001291969.1| polyA polymerase [Haemophilus influenzae PittGG] gi|148718458|gb|ABQ99585.1| polyA polymerase [Haemophilus influenzae PittGG] Length = 452 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPTL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SAYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|289164882|ref|YP_003455020.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella longbeachae NSW150] gi|288858055|emb|CBJ11915.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella longbeachae NSW150] Length = 438 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 14/239 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 S+ + +L+ L ++ IVGG+VRD L++ + +D D+AT P++V +F R Sbjct: 31 SSNALKVLNRLIGAGFQAYIVGGSVRDLLLHKAPKDFDVATNATPNQVKSLFRNGRI--- 87 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------GRYAKVVFTRDWKADSLRRDFT 123 + + I+ ++ ++ T RS + D G + D+ RRDFT Sbjct: 88 -IGRRFKLVHILFHREIIEVATFRSHVALDENQVTNERGMLVRDNAYGSLDEDAWRRDFT 146 Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 IN+LY + +ID+ GG+ D+ R I+ IGD R ED +R+LR RF A K + Sbjct: 147 INSLYYNINDSSIIDFTGGVKDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNFK-L 205 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ + + +S+ R++ E+ KL + N + G+F +F Q++ Sbjct: 206 AAETAAPFPEISHLITHVSNSRLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFPQTQKL 264 >gi|125973202|ref|YP_001037112.1| polynucleotide adenylyltransferase region [Clostridium thermocellum ATCC 27405] gi|125713427|gb|ABN51919.1| Polynucleotide adenylyltransferase region [Clostridium thermocellum ATCC 27405] Length = 877 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 93/413 (22%), Positives = 168/413 (40%), Gaps = 21/413 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 LI + + + +VGG VRD ++ + DIDI ++ + Sbjct: 467 LIEAGKIADDVGLNAYVVGGFVRDLILGVENFDIDIVVEGDALMFSEKLAQHYQAHLTKH 526 Query: 75 ISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129 +GT ++ + D+ T R + VV K D RRDFTIN++ Sbjct: 527 DRFGTAVVVLEDDFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNK 586 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G ++D+ GG DL+ I+ + + +ED RI R RF Y K + A Sbjct: 587 SGFGNIVDFYGGRRDLQMGLIRILYN--LSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFA 644 Query: 190 SIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------Q 239 L +S ERI E +L+ N + M + I K ++ +V Sbjct: 645 IKAIESGILGKVSHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLL 704 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + + + L+ + E V E +LL ++L S + + +++K L +E + ++ F Sbjct: 705 KNAEENLACLKEKVSVQESLDRTLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFI 764 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 N + I Y +++ ++I L + + FI +V+ I + K Sbjct: 765 EANDIILSNLSGNIDISNYDVYNELKGLSMEILFVLC---MLSNEKKFIDRVILYINNLK 821 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +TG D+ + G+ PG + +L E +N + Q ++L L+K+I Sbjct: 822 NIKTCVTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDELE-FLKKII 873 >gi|293603552|ref|ZP_06685973.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553] gi|292817988|gb|EFF77048.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553] Length = 460 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 12/232 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCEVLRQHGYEGYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ + GR + + D+ RRDFT+N Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASEDQETDEHGRILRDNVFGSQEEDAKRRDFTMN 152 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A ID Sbjct: 153 ALYYDPHNEEVIDYHNGVADLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GTIDP 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + ++ + + R++ E+ KLL + ++ + + G+ + Sbjct: 212 ATREPISTMAELIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHNGLLP 263 >gi|126662057|ref|ZP_01733056.1| tRNA nucleotidyltransferase [Flavobacteria bacterium BAL38] gi|126625436|gb|EAZ96125.1| tRNA nucleotidyltransferase [Flavobacteria bacterium BAL38] Length = 471 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 87/460 (18%), Positives = 172/460 (37%), Gaps = 57/460 (12%) Query: 5 VQHKWFHDSDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRI 62 + +K + + I+ + + ++GG VRD L+N + DIDI + Sbjct: 1 MNYKQHLEHKIFKIISQAAQELNLECYVIGGFVRDILLNRDHKKDIDIVAVGSGIELALK 60 Query: 63 FSK--TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 S+ + + +YGT + + R + T +V K D RR Sbjct: 61 VSQLIPFHPKVQVFKNYGTAMLRYDDIDVEFVGARKESYTHDSRNPLVENGTLKDDQERR 120 Query: 121 DFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL G ++D G+ DL+N+ IK + +D LR++R RF Sbjct: 121 DFTINALAFSLNAENFGNLVDPFNGVEDLKNKIIKTPLNPDITYSDDPLRMMRAIRFATQ 180 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I+S+ L A K K + I+S ERI E++K+L ++ P +H++ G+ + I Sbjct: 181 LN-FEIESESLKAISKNKDRINIISGERIVDELHKILASEKPSIGFLHLFQTGLLEIILP 239 Query: 237 DVQEISLDQLSQVIEAEQVFEWKI-----------DSLLRFIVLISWQDKKSILSMAKKF 285 ++ ++ + + + F + D LR+ L+ K KK Sbjct: 240 ELTALNNVEEVEGHTHKNNFYHTLEVVDNICPNTDDVWLRWSALLHDIGKAPTKRFNKKQ 299 Query: 286 ------------SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI-- 331 + ++I L N + + L D V + ++ Sbjct: 300 GWTFHGHEFLGGKMVKKIFERLHMPLNHKMKFVQKMVMMSSRPIVLAEDIVTDSAVRRLV 359 Query: 332 ---------FLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDD 369 + L ++T ++ + + + + P++G++ Sbjct: 360 FDAGEDVENLMTLCEADITTKNPKKFNKYHNNFKIVRTKIVEVEEKDRVRVFQPPISGEE 419 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +++ G+ PG+++G + K+ + E + Sbjct: 420 IMELFGLKPGREIGQLKEAVKEAILEGEIPNEYEAAKEFV 459 >gi|149370611|ref|ZP_01890300.1| tRNA nucleotidyltransferase [unidentified eubacterium SCB49] gi|149356162|gb|EDM44719.1| tRNA nucleotidyltransferase [unidentified eubacterium SCB49] Length = 474 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 84/437 (19%), Positives = 161/437 (36%), Gaps = 56/437 (12%) Query: 29 SCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSK--TRYKVIPTSISYGTIKIICR 85 + ++GG VRD L++ +DIDI + + SK + SYGT + Sbjct: 29 TYVIGGFVRDYLLDRGDAKDIDIVAVGSGITLAKEVSKLLPGKPNVSVFKSYGTAMLKSS 88 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGG 141 + R + ++ V + D RRDFTINAL G ++D G Sbjct: 89 NIELEFVGARKESYSENSRNPAVENGTLQDDQNRRDFTINALALSLNEATYGDLLDPFNG 148 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + DL N+ I+ D +D LR+LR RF + I+ + L A + + I+S Sbjct: 149 VEDLHNKIIRTPLDPDITYSDDPLRMLRAIRFATQL-DFTIEKESLEAITRNADRITIIS 207 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLDQLSQVIE 251 ERI +EINK+L A P ++ G+ IF ++ + D +E Sbjct: 208 KERIVTEINKILNAPVPSKGFALLHKTGLLPHIFPELVALQGIDEKEGQKHKDNFWHTLE 267 Query: 252 AEQVFEWKIDSL-LRFIVLISWQDK----------------------KSILSMAKKFSLP 288 D+L LR+ L+ K K + + K+ +P Sbjct: 268 VVDNIAQTTDNLWLRWAALLHDIGKAPTKRFHKKIGWTFHSHEFVGSKMVYKLFKRLKMP 327 Query: 289 REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 + + ++ + E+ + + L ++T ++ Sbjct: 328 LNDKMKFVQKMVLMSSRPIVLATEVTDSAVRRLVFDAGDYVDDLMTLCEADITTKNPKKF 387 Query: 349 LQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWIN 394 + + + + P++G++++K + + P +++G I K+ + Sbjct: 388 KKYHKNFEIVRKKIVEVEERDSIRNFQPPVSGEEIMKTFNLKPSREIGQIKDAIKEAILE 447 Query: 395 SSFQLSQEDLHHL-LRK 410 ++ + L+K Sbjct: 448 GEIANDYDEAYAFMLKK 464 >gi|332142885|ref|YP_004428623.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|332143070|ref|YP_004428808.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327552907|gb|AEA99625.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327553092|gb|AEA99810.1| poly(A) polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 439 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 71/398 (17%), Positives = 141/398 (35%), Gaps = 46/398 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++ + ++ LN +S +VGG VRD LM +D D+AT P+++ +F R Sbjct: 14 SANALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVATNATPEQIKGLFKNCRL--- 70 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD------------------LITDGRYAKVVFTRDW 113 + I+ ++ ++ T R + G+ + Sbjct: 71 -IGRRFRLAHIVFGREIIEVATFRGHHQESDEDENVPKAKVVAKRDSHGQLVRDNVFGSI 129 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFT NA+Y V D+ GL + R ++ IGD R ED +R+LR R Sbjct: 130 EEDAERRDFTFNAMYYSVADFTVTDFANGLAAIEKREVELIGDPETRYREDPVRMLRAVR 189 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F G + I+ L+ + R++ E KL + + ++ G+ + Sbjct: 190 FAVKLGMR-IEEKTAEPIKPLANLLQNIPPARLFEETLKLFLSGKGEVTFLMLHEYGLIE 248 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKID----------SLLRFIVLISWQDKKSILSMA 282 +F + D+ S+ ++ + D + L+ + ++ + Sbjct: 249 PLFPQLAPFLKDENSREMQFVRRVLANTDERINSNQRVTPAFLYAALLWYPVEEQSQHLQ 308 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLK 330 + L + + S + + + IP+ ++L +G + Sbjct: 309 SESGLNAHDAFNIASGEVISRQTQRIMIPKRFSTVVRDIWILQQRLPKRFGRRAFQLLTH 368 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 Y+ L + +L W G Sbjct: 369 PKFRAGYDFLLVRGQVEGGDLLELAQWWTHFQHADNGK 406 >gi|295394862|ref|ZP_06805075.1| tRNA adenylyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972195|gb|EFG48057.1| tRNA adenylyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 515 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 92/483 (19%), Positives = 161/483 (33%), Gaps = 87/483 (18%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + + ++ + +VGG+VRD+L+ + D+D T PD + +I + Sbjct: 18 DPIVGELGNRFDEAGFELALVGGSVRDALLGREIPDLDFTTDARPDDIEKIIAPWADTYW 77 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GTI ++ R +ITT R+D R V F + D +RRDFTI A+ Sbjct: 78 DIGRKFGTIGMMKRGYQVEITTYRADSYDPQSRKPTVAFGDNLDDDLVRRDFTIGAMAVR 137 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +D GL L +RTI G A +D LR++R RF + G ++ + A Sbjct: 138 LPSRAFVDPYNGLGALESRTITTPGSATTSFTDDPLRMMRAARFVSQLG-FSLAPEVRAA 196 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245 + I+S+ER+ E+ KL+ P I + + G+ I +V + L++ Sbjct: 197 MSDMADRIAIVSAERVRDELTKLIVGAQPWEGIDALVDTGLADHILPEVSGLRLERDEHH 256 Query: 246 ------------LSQVIEAEQVFE--------------------------------WKID 261 L Q ++ E + D Sbjct: 257 RHKDVYQHSLTVLRQAVQLEAEYAKRALSNAEGEAGDSVAEQAQDTAKRATVDPEFTAPD 316 Query: 262 SLLRFIVLISWQDKKSILSMA----------------------KKFSLPREIRYFLISFF 299 ++RF L+ K + A KK + +E + Sbjct: 317 FIVRFAALMHDVGKPATRKFAPGGAVTFYHHDVVGAKLTRSRMKKLNFDKETTTKVARLV 376 Query: 300 NCNFNQ---KTLSIPEIKKLFYLYGDKVMIAKLKIFL----------ALHYNNLTHQDTC 346 + + Y+ ++ +L I + D Sbjct: 377 ELHLRFYGYGDAGWTDSAVRRYVTDAGDLLTRLHILTRSDVTTRNRRKAERLAFAYDDLE 436 Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 ++ L+ L G +++ I PG VG H + E Sbjct: 437 SRIEALAQKEAIGAIRPDLNGQQIMEILEISPGPVVGRAYKHMLDIRMERGPLSYDEARL 496 Query: 406 HLL 408 LL Sbjct: 497 QLL 499 >gi|77164400|ref|YP_342925.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707] gi|254434825|ref|ZP_05048333.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27] gi|76882714|gb|ABA57395.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707] gi|207091158|gb|EDZ68429.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27] Length = 401 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 131/380 (34%), Gaps = 40/380 (10%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L L K + +VGG VRD L+ +D D+ T P+++ +F R + Sbjct: 2 LYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLFRSCRL----VGRRFR 57 Query: 79 TIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QG 133 + ++ + T R L +GR + D+ RRDF++NALY + Sbjct: 58 LAHLRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDAWRRDFSVNALYYNIRDF 117 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 V+DY G+ DL ++ IGD R ED +R+LR RF A G + D + Sbjct: 118 SVVDYTRGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLG-FTLHPDSETPIWEL 176 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-----------IS 242 L+ + S R++ EI KL + + +F+ +F + I Sbjct: 177 APSLQEIPSARLFEEILKLFLGGCAVQTFELLRRFNLFRWLFPQTEACLGEEEQGFPRIF 236 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLI-------------SWQDKKSILSMAKKFSLPR 289 L Q +A + F L+ + + A + L Sbjct: 237 LAQALNNTDARIAAGKPVTPAFLFAALLWEPVRKLTERYQQEGVPEFQAMREAAEAVLAN 296 Query: 290 EI------RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + R F + + Q + K+ L A L + + Sbjct: 297 QTNHVALPRRFSLPMREIWYLQPRFAYRRGKRPLRLLQHPRFRAAYDFLLLRAQSGEDQE 356 Query: 344 DTCFILQVLSDIIHWKKPLF 363 + C ++ ++ Sbjct: 357 ELCQWWTEFQEMGEKERLRL 376 >gi|152983716|ref|YP_001350768.1| poly(A) polymerase [Pseudomonas aeruginosa PA7] gi|150958874|gb|ABR80899.1| poly(A) polymerase [Pseudomonas aeruginosa PA7] Length = 467 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 19/239 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ +L + ++ +VGG VRD ++ ++ +D D+AT+ P++V F R Sbjct: 39 SRNAVKVVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARI--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-------------LITDGRYAKVVFTRDWKADSL 118 + + + ++ ++ T R+ GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRAHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDAQ 154 Query: 119 RRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY D + ++DY G++D+RNR I+ IGD R LED +R+LR RF A Sbjct: 155 RRDFTINALYFDVTSERLLDYAHGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKL 214 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ + L+ + S R++ E+ KL A + +F +F Sbjct: 215 -DFEIEKHSAAPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFP 272 >gi|316940567|gb|ADU74601.1| CBS domain containing protein [Clostridium thermocellum DSM 1313] Length = 877 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 92/413 (22%), Positives = 167/413 (40%), Gaps = 21/413 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 LI + + + +VGG VRD ++ + DIDI ++ + Sbjct: 467 LIEAGKIADDVGLNAYVVGGFVRDLILGVENFDIDIVVEGDALMFSEKLAQHYQAHLTKH 526 Query: 75 ISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129 +GT ++ + D+ T R + VV K D RRDFTIN++ Sbjct: 527 DRFGTAVVVLEDDFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNK 586 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G ++D+ GG DL+ I+ + + +ED RI R RF Y K + A Sbjct: 587 SGFGNIVDFYGGRRDLQMGLIRILYN--LSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFA 644 Query: 190 SIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------Q 239 L +S ERI E +L+ N + M + I K ++ +V Sbjct: 645 IKAIESGILGKVSHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLL 704 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + + + L+ + E V E +LL ++L S + + +++K L +E + ++ F Sbjct: 705 KNAEENLACLKEKVSVQESLDRTLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFI 764 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + I Y +++ ++I L + + FI +V+ I + K Sbjct: 765 EAKDIILSNLSGNIDISNYDVYNELKELSMEILFVLC---MLSNEKKFIDRVILYINNLK 821 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +TG D+ + G+ PG + +L E +N + Q ++L L+K+I Sbjct: 822 NIKTCVTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDELE-FLKKII 873 >gi|254784780|ref|YP_003072208.1| poly(A) polymerase [Teredinibacter turnerae T7901] gi|237686559|gb|ACR13823.1| putative poly(A) polymerase [Teredinibacter turnerae T7901] Length = 463 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 17/242 (7%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + I ++ L ++ +VGG VRD L+ +D D+AT+ P+++ IF R Sbjct: 40 LISRNAIRVIDQLLDAGYEAYLVGGGVRDLLLGGKPKDFDVATSATPEQLRGIFRNARI- 98 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSL 118 + + + ++ ++TT R + G + + K D+ Sbjct: 99 ---IGKRFQIVHVRFGREIIEVTTFRDNHAVADDNQQAKQSEHGVLLRDNVYGNLKTDAE 155 Query: 119 RRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NALY + + +++++ GL DL +R I+ +GD R ED +R+LR RF A Sbjct: 156 RRDFTVNALYYNPRSRELLEFSTGLEDLNDRVIRIVGDPQTRYREDPVRLLRAVRFAAKL 215 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G I+ + L + R++ E+ KL + + + + +FK +F D Sbjct: 216 G-FTIEPVTEAPIREHADYLTHIPPARLFEEVLKLFMSGSATATVNLLREYHLFKYLFPD 274 Query: 238 VQ 239 Sbjct: 275 TD 276 >gi|253997249|ref|YP_003049313.1| poly(A) polymerase [Methylotenera mobilis JLW8] gi|253983928|gb|ACT48786.1| poly(A) polymerase [Methylotenera mobilis JLW8] Length = 480 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 128/297 (43%), Gaps = 24/297 (8%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + ++ I + L K ++ IVGGAVRD L+ +D D+AT P+ V R+F Sbjct: 66 IDRRLLSNA-AIKTIEGLQKAGFEAYIVGGAVRDLLLQREPKDFDVATDATPEEVNRVFR 124 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKAD 116 ++R + + ++ + +++T R GR + + D Sbjct: 125 RSRI----IGRRFRLVHVLFGDETIEVSTFRGHHEAKGDAHTNESGRIIRDNVFGSLEED 180 Query: 117 SLRRDFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT NALY D +++ D+ G D++ ++ IG R ED +R+LR R A Sbjct: 181 ATRRDFTANALYYDPTSEIVLDFHQGFADIQAGILRMIGKPETRYAEDPVRMLRVVRLSA 240 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G K ID + K L+ + R++ E+ KL + + + ++ + + + Sbjct: 241 KLGLK-IDPATMAPIAKMADLLQDVPPSRLFDEMLKLFLSGHAIESVSALREQHLHHGLL 299 Query: 236 LDVQEISLDQ--------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + ++ L+Q L+ E++ K + + W + + + KK Sbjct: 300 P-MLDVVLEQPMGERFVMLALKNTDERILSGKSANPSFLFATLLWHEVLAAWEVYKK 355 >gi|16766504|ref|NP_462119.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990243|ref|ZP_02571343.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|73619845|sp|Q8ZLY4|CCA_SALTY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|16421761|gb|AAL22078.1| tRNA nucleotidyl transferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205331228|gb|EDZ17992.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248334|emb|CBG26171.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995398|gb|ACY90283.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159757|emb|CBW19276.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914231|dbj|BAJ38205.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225886|gb|EFX50940.1| tRNA nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131565|gb|ADX18995.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990070|gb|AEF09053.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 413 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDAGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|145639648|ref|ZP_01795251.1| polyA polymerase [Haemophilus influenzae PittII] gi|145271205|gb|EDK11119.1| polyA polymerase [Haemophilus influenzae PittII] gi|309750618|gb|ADO80602.1| Poly(A) polymerase I [Haemophilus influenzae R2866] Length = 452 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + + ++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D++R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SPYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|116328419|ref|YP_798139.1| poly A polymerase family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121163|gb|ABJ79206.1| Poly A polymerase family of protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 432 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 110/421 (26%), Positives = 196/421 (46%), Gaps = 34/421 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+I I + K + ++GG+VRD L++ + D+ T++LPD+++ +F +T +P Sbjct: 19 EDIIRITQNIRKEGGECYLIGGSVRDLLLSKIPDEFDLTTSLLPDKILTLFKRT----VP 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + + ++ITT R D+ DGR + V F D RRDFT+NAL D Sbjct: 75 TGIKHGTVTVLIQDRSYEITTFRKDVDYIDGRRPEAVEFGVSLSEDLKRRDFTMNALALD 134 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++ID GL D++N+ I+ IGD R ED LR +R RF + G ++S+ A Sbjct: 135 LEAKRLIDEHSGLEDIQNKIIRTIGDPIERFTEDGLRPIRAIRFVSSLG-FALESETAKA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I+ + +S ER+ E+NK L++KNP ++ I + +F ++ + + Sbjct: 194 IIQCRNITAKISKERVHDELNKTLKSKNPAPSLKLFKEFRILE-LFTSLKLYPTENTNVE 252 Query: 250 IEAEQVFEWKIDSLLRFIVLISW-----QDKKSILSMAKKFSLPREIRYFLISFFNCNF- 303 + +V + LR L +W QD+ S K + + F + F Sbjct: 253 KKIREV--PVVPLSLRLSFLHAWLFGSFQDRNSAKQFMKDLRYSNQNTKDSLFFSDMLFM 310 Query: 304 -----NQKTLSIPEIKKL-FYLYGDKVMIAKLKIF------LALHYNNLTHQ--DTCFIL 349 + +L+ EI+K + L+I LA Y + D IL Sbjct: 311 MLNRKDDASLTDAEIRKAVLHPICVYAGRENLRILTEYILNLAYTYEPILKDIFDFRRIL 370 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + L G+D+++ +PP K++G++L + + + ++ L L Sbjct: 371 DLTERSQALVVTELALRGEDILRACPNLPP-KQIGSVLEKLLFHVLENPDENRKDFLFPL 429 Query: 408 L 408 L Sbjct: 430 L 430 >gi|254282332|ref|ZP_04957300.1| poly(A) polymerase [gamma proteobacterium NOR51-B] gi|219678535|gb|EED34884.1| poly(A) polymerase [gamma proteobacterium NOR51-B] Length = 432 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 27/256 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + ++S L ++ IVGGAVRD L+ +D D+ T P+++ +F R Sbjct: 13 PNLVSEAAVKVVSRLKSKGYEAYIVGGAVRDLLLGGQPKDFDVGTNATPEQIKAVFKNAR 72 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYA---------------------K 106 + + + + ++TT R + A + Sbjct: 73 I----IGRRFQIVHVRFGPEIIEVTTYRGHHASGSAPASGKDSGNTKAHSRQSDKGLLLR 128 Query: 107 VVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 + D+ RRD TINALY D + + V+D + G+ D+ R ++ IG+ H R ED + Sbjct: 129 DNVYGTLEEDAARRDLTINALYYDPEDESVLDQLNGMADVEARLVRVIGEPHTRYREDPV 188 Query: 166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 R+LR RF A + +++S+ A + L + S R++ E KL A + Sbjct: 189 RMLRVLRFAAKL-QFDVESETDHAIAECAPLLAEIPSARLFDEFLKLFMAGYATPTFKLL 247 Query: 226 YNGGIFKEIFLDVQEI 241 Y G+ +F + + Sbjct: 248 YRYGLLHHLFPEPTRV 263 >gi|54297450|ref|YP_123819.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella pneumophila str. Paris] gi|53751235|emb|CAH12646.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella pneumophila str. Paris] Length = 423 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 14/237 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L+ L ++ IVGG+VRD L++ + +D DIAT P+ V +F R Sbjct: 20 NALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARI----I 75 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYA--------KVVFTRDWKADSLRRDFTIN 125 + + I+ ++ ++ T R +D + + D+ RRDFTIN Sbjct: 76 GRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTIN 135 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 +LY + +ID+ G+ D++ + I+ IGD R ED +R+LR RF A + N+ Sbjct: 136 SLYYNISDSSIIDFTSGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKL-QFNLSP 194 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + K + +SS R++ EI KL + + + G+F +F + Sbjct: 195 ETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAAL 251 >gi|238896556|ref|YP_002921297.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Klebsiella pneumoniae NTUH-K2044] gi|330003939|ref|ZP_08304786.1| multifunctional CCA protein [Klebsiella sp. MS 92-3] gi|238548879|dbj|BAH65230.1| tRNA nucleotidyl transferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328536782|gb|EGF63097.1| multifunctional CCA protein [Klebsiella sp. MS 92-3] Length = 413 Score = 239 bits (611), Expect = 6e-61, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + + Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQSRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD LRRD T+NAL D G +ID GG Sbjct: 57 ---EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDLR R ++ + A ED LR+LR RF A Y ++ L+A++ L Sbjct: 114 NDLRQRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAMVEAGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + K +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ L ++ ++MA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGLHTLM---------TVTMAAMLSPDVDVRFATL----CHDLGKGLTPKALWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCARLRVPN-DIRDLAKLVAEYHDLIHTLPILQPKT 318 >gi|116747757|ref|YP_844444.1| polynucleotide adenylyltransferase region [Syntrophobacter fumaroxidans MPOB] gi|116696821|gb|ABK16009.1| Polynucleotide adenylyltransferase region [Syntrophobacter fumaroxidans MPOB] Length = 427 Score = 239 bits (611), Expect = 6e-61, Method: Composition-based stats. Identities = 94/427 (22%), Positives = 174/427 (40%), Gaps = 51/427 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D++ ++ +L+ +VGGA+RD + + +D D+AT D V+R+F +VIP Sbjct: 12 PDVMAMMGILSDAGHGVWLVGGALRDHFLGQAPRDFDLATDASADEVVRLFP----RVIP 67 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 I +GT+++ R + ++T+ D RRDFTINAL Sbjct: 68 IGIRHGTVQVHTRTRDVEVTS-----------TPGSGLEGILEDLGRRDFTINALALSYP 116 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +G +D GG ND R ++ +GDA R ED LR+LR FRF + G +++ A+ Sbjct: 117 EGSFLDPHGGCNDADARILRAVGDAGRRFREDPLRVLRVFRFVSELG-LDVEPGTCAAAR 175 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 GL ++ ER+ E+ ++L N ++A+ M + + + ++ E S Sbjct: 176 SEANGLAAVAGERVREEVFRILSGGNAVSALRLMEESRVLRTVLPELHE------SGCSH 229 Query: 252 AEQVFEWKIDSL-LRFIVLISWQDKKS-----------------ILSMAKKFSLPREIRY 293 A + L +R L+ ++ + ++ L R Sbjct: 230 AIDTMGRCPNRLRIRMAALLHGLVEEEASLGAVSPCGRCVSSRRAEEVMVRWRLSRRQIQ 289 Query: 294 FLISFFNCNF--NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351 ++ + + ++++ G + L++ A + + Sbjct: 290 GVLGILENPLPGDSANWTDADLRRFIARTGPEFAGDVLELARACRAAGGDSAGAEQLSGL 349 Query: 352 LSDIIHW-------KKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQED 403 + P+TG+DV++ G+ PG +VG IL E I + F ++ Sbjct: 350 YRRYRGEVELRPVPRLRDLPITGEDVMRITGLKPGPRVGKILERAHLEVIENPFMNERKI 409 Query: 404 LHHLLRK 410 L +RK Sbjct: 410 LMDFIRK 416 >gi|148274148|ref|YP_001223709.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147832078|emb|CAN03051.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 476 Score = 239 bits (611), Expect = 6e-61, Method: Composition-based stats. Identities = 83/453 (18%), Positives = 164/453 (36%), Gaps = 57/453 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + ++ + +VGG VRD+ + + D+D+ T PDR++ I Sbjct: 17 SPPVAVLARAFHEAGHELALVGGPVRDAFLGRAATDLDLTTDARPDRILEIVKPVADAHW 76 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD 130 ++GTI + + +ITT R+D R +V F + D +RRDFT+NAL Sbjct: 77 DIGRAFGTIGARVKGEQVEITTYRTDQYDGVSRKPEVEFGSSLEEDLVRRDFTVNALAVR 136 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 Q ++D GG++DL + ++ +D LR++R RF + G + +D L A Sbjct: 137 LPQVVLVDPSGGIDDLLAQVLRTPVAPEVSFGDDPLRMMRAVRFASQLGFR-LDDAALAA 195 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245 + +S ER+ E++KLL P + + GG+ + ++ + L+ Sbjct: 196 IRDMAPRILDISVERVSDELSKLLRTPEPRAGLDLLVEGGLADHVLPELPAMKLEADEHH 255 Query: 246 ------------LSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSM---------- 281 L Q I+ E+ D +LR L+ K S + Sbjct: 256 RHKDVYQHSLQVLDQAIDHERSRHPGEAPDLVLRLAALLHDIGKPSTRRLEPGGVVTFHH 315 Query: 282 ------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKV 324 + + + + + + +++ G ++ Sbjct: 316 HDVVGSKMAKRRLRALRFDNDTIASVARLIELHLRFFGYTEGGWTDSAVRRYVRDAGPEL 375 Query: 325 MIAKLKIFLALHYNNLTHQDT--------CFILQVLSDIIHWKKPLFPLTGDDVVK-YGI 375 + + N D + L++ L G+ +++ + Sbjct: 376 ERLHMLTRADVTTQNRRKADRLGFAYDDLEARIAELAEQEEMAAVRPDLDGEAIMRILDV 435 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PPG VG + ++ ++E L+ Sbjct: 436 PPGPVVGRAYRFLLELRLDEGPLPAEEAERRLV 468 >gi|281417401|ref|ZP_06248421.1| CBS domain containing protein [Clostridium thermocellum JW20] gi|281408803|gb|EFB39061.1| CBS domain containing protein [Clostridium thermocellum JW20] Length = 877 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 92/413 (22%), Positives = 167/413 (40%), Gaps = 21/413 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 LI + + + +VGG VRD ++ + DIDI ++ + Sbjct: 467 LIEAGKIADDVGLNAYVVGGFVRDLILGVENFDIDIVVEGDALMFSEKLAQHYQAHLTKH 526 Query: 75 ISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129 +GT ++ + D+ T R + VV K D RRDFTIN++ Sbjct: 527 DRFGTAVVVLEDDFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNK 586 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G ++D+ GG DL+ I+ + + +ED RI R RF Y K + A Sbjct: 587 SGFGNIVDFYGGRRDLQMGLIRILYN--LSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFA 644 Query: 190 SIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------Q 239 L +S ERI E +L+ N + M + I K ++ +V Sbjct: 645 IKAIESGILGKVSHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLL 704 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + + + L+ + E V E +LL ++L S + + +++K L +E + ++ F Sbjct: 705 KNAEENLACLKEKVSVQESLDRTLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFI 764 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + I Y +++ ++I L + + FI +V+ I + K Sbjct: 765 EAKDIILSNLSGNIDISNYDVYNELKGLSMEILFVLC---MLSNEKKFIDRVILYINNLK 821 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +TG D+ + G+ PG + +L E +N + Q ++L L+K+I Sbjct: 822 NIKTCVTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDELE-FLKKII 873 >gi|19554274|ref|NP_602276.1| putative polynucleotide polymerase [Corynebacterium glutamicum ATCC 13032] gi|62391931|ref|YP_227333.1| polyA polymerase [Corynebacterium glutamicum ATCC 13032] gi|41223078|emb|CAF19023.1| POLYA POLYMERASE [Corynebacterium glutamicum ATCC 13032] Length = 494 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 87/449 (19%), Positives = 162/449 (36%), Gaps = 56/449 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L+ + + + +VGG+VRD+ + D+D T+ P+ I V T Sbjct: 39 LVPLAAAFSSKGHSLYLVGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTG 98 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY----A 129 I++GT+ + +ITT RSDL + R +V F + D +RRDF +NA+ A Sbjct: 99 IAFGTLSAEKHGQQIEITTFRSDLYDGNSRNPEVTFGDTLEGDLIRRDFKVNAMAVEIQA 158 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D + D VGGL DL T+ +D LR+LR RF + + + A Sbjct: 159 DGELTFHDPVGGLEDLLTHTLDTPATPEQSFNDDPLRMLRAARFVSQLN-FTLAPRVITA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245 + + + ++ ER+ E++K++ KNP I M GI + I+ ++ + + Q Sbjct: 218 MTEMAQQITRITVERMQVELDKMILGKNPEAGIDLMVESGIAQIIYPEIPAMQMTQDEHM 277 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA-------------- 282 L + +A E D +LR+ L+ K Sbjct: 278 QHKDVYAHSLQVMRQAIDQEEDGPDLVLRWAALLHDCGKPDTRDFNEEGRVSFHQHEVVG 337 Query: 283 --------KKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAKLKI 331 +K +++ + + S + Y ++ +L Sbjct: 338 AKLVRRRMRKLKYSKQMVGDVGQLVFLHMRFHGFSEGQWTDSAVRRYAADAGELLPRLHK 397 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + + + + L G+++++ I G + Sbjct: 398 LVRADCTTRNKRKAARLQATYDHLEERIAEIAAKEDLARVRPDLDGNEIMEILNIQAGPE 457 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409 VG K+ + L +E L+ Sbjct: 458 VGKAWAFLKELRLERG-PLDREVAIAELK 485 >gi|309972803|gb|ADO96004.1| Poly(A) polymerase I [Haemophilus influenzae R2846] Length = 452 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D++R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SSYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|114048470|ref|YP_739020.1| metal dependent phosphohydrolase [Shewanella sp. MR-7] gi|123131162|sp|Q0HSE2|CCA_SHESR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|113889912|gb|ABI43963.1| metal dependent phosphohydrolase [Shewanella sp. MR-7] Length = 416 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 78/349 (22%), Positives = 146/349 (41%), Gaps = 31/349 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D P+++ ++ + K P + T + Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDFMVVGATPEQMQQLGYRQVGKDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINA+ D+ G + D G+ Sbjct: 57 ---EYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEAGNLHDPFHGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLK 198 D+ R ++ + A ED LR+LR RF A + E ++ L+ + + L Sbjct: 114 ADIEARQLRHVSAA---FSEDPLRVLRVARFAARFHGLGFEIAPETMALMQHMSQTEELT 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E++K L +P + G K +F ++ D L V + E+ + Sbjct: 171 ALTPERVWQEVDKSLGGPHPEVFFEVLRQCGALKVLFPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEIKKL 316 +ID+ L +++++ + + +L ++ L + + +P IK L Sbjct: 225 EIDTGLHTMMVLAQSSSMTEEKAVRFAALVHDLGKALSPKEHWPKHHGHGQKGLPVIKSL 284 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362 L + ++ + N+ + I+++ W+KP Sbjct: 285 CERLRVPNEYRDLALLVSDQHQNVHQAFELRSETIIKLFDKADFWRKPE 333 >gi|298372295|ref|ZP_06982285.1| polyA polymerase family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275199|gb|EFI16750.1| polyA polymerase family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 471 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 94/466 (20%), Positives = 174/466 (37%), Gaps = 62/466 (13%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K FH I + + ++GG VRD L++ +DIDI Sbjct: 7 IDEKIFH-----TIGDFADNVGIECYLIGGYVRDLLLDRGSKDIDIVVVGDGVAFAEGLR 61 Query: 65 KTRYK--VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + K + +YGT ++ R +I R + +V + D RRDF Sbjct: 62 RQLGKGTSLAVFRTYGTAQLKTRNGEIEIVGARRESYRHDSRNPIVEEGTLEDDQNRRDF 121 Query: 123 TINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINAL G++ID GG+ DL NR I+ D +D LR++R RF G Sbjct: 122 TINALAICLNKKHFGELIDPFGGIEDLGNRLIRTPLDPDITFSDDPLRMMRAIRFATQLG 181 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 I + LVA + ++ +KI++ ERI EINK+L + P + G+ I ++ Sbjct: 182 -FIIQDETLVAIWRNRERIKIITKERIADEINKILLSAKPSTGFYLLDKTGLLPLIMPEL 240 Query: 239 QEISLDQLSQVIEAEQVFEWKI-----------DSLLRFIVLISWQDK------------ 275 + + + F+ + D LR+ L+ K Sbjct: 241 SALKGVETINGRAHKDNFKHSLQVLDNLAMRSDDLWLRWASLLHDIGKPVTKRWEEARGW 300 Query: 276 ----------KSILSMAKKFSLP--REIRY----FLISFFNCNFNQKTLSIPEIKKLFYL 319 K + + LP +R+ L+ ++ T++ +++L + Sbjct: 301 TFHSHDFVGAKLVKKIFSNLKLPMGEPLRFVQKMVLLHMRPIALSEDTVTDSAVRRLLFD 360 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPLTGDDV 370 G+ V + + + + +N + F L L + + P+ G ++ Sbjct: 361 AGNDV-DSLMMLCQSDITSNNMKKVKRFADNFELVRRKLVELEEKDRIRNFQPPVDGIEI 419 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 ++ +G+ VG + K ++ S ++ L ++ Sbjct: 420 MQTFGLGQCSMVGELKTQIKDAILDGIIPNSHDEAFDYLLQIAKEK 465 >gi|161616196|ref|YP_001590161.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189081877|sp|A9N5Y2|CCA_SALPB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|161365560|gb|ABX69328.1| hypothetical protein SPAB_03999 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 413 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTQERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|262042281|ref|ZP_06015446.1| multifunctional CCA protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040345|gb|EEW41451.1| multifunctional CCA protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 413 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + + Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQSRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD LRRD T+NAL D G +ID GG Sbjct: 57 ---EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDLR R ++ + A ED LR+LR RF A Y ++ L+A++ L Sbjct: 114 NDLRQRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAMVEAGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + K +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ L ++ ++MA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGLHTLM---------TVTMAAMLSPDVDVRFATL----CHDLGKGLTPKALWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCARLRVPN-DIRDLAKLVAEYHDLIHTLPILQPKT 318 >gi|296118581|ref|ZP_06837159.1| tRNA adenylyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295968480|gb|EFG81727.1| tRNA adenylyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 478 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 86/458 (18%), Positives = 172/458 (37%), Gaps = 56/458 (12%) Query: 13 SDLIN-ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 SDL++ ++S + +VGG+VRD+L+ D+D T P V I Sbjct: 23 SDLLSGLISEFARRNHTLYLVGGSVRDALLGRLGNDLDFTTDARPQVVHEILDSWAETTW 82 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY-- 128 T I +GT+ + + + +ITT R+DL D R +V F D +RRDF +NA+ Sbjct: 83 DTGIEFGTVSAVYKGQQIEITTFRADLYDGDSRNPEVTFGNTLDDDLIRRDFKVNAMAIE 142 Query: 129 --ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 AD + D + GL DL+ + +D LR+LR RF + + + Sbjct: 143 LRADGTREFFDPMEGLKDLQAGIMDTPDAPELSFRDDPLRMLRAARFVSQL-QFGVSDRV 201 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ- 245 A + ++ ++ ERI E++K++ P + I + G+ + IF ++ ++++ Sbjct: 202 RQAMTDMAEEIRRITVERIQVEMDKMILGVAPWDGIDLLVETGLAQIIFPEIPAMAMEPD 261 Query: 246 ------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSIL-------------- 279 L+ + +A + E D +LR+ L+ K Sbjct: 262 EHAQHKDVYAHSLTVLRQAMEQEEDGPDLVLRWAALLHDIGKPDTRDVTDGKVSFHQHEI 321 Query: 280 ---SMAKK----FSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKL 329 +A++ P+ + + + Y+ ++ +L Sbjct: 322 VGAKLARRRMRQLKYPKATTQEVSELVRLHMRFHGFGEGQWTDSAVRRYVNDAGELLPRL 381 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 + + + + + L G+++++ + PG Sbjct: 382 HKLVRADCTTRNERKARRLQRTYDHLEERIEEIQEKEGIAAIRPDLDGNEIMEILDLKPG 441 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 +VG + K + L +++ LR+ S + Sbjct: 442 PEVGQAWAYMKDLRLELG-PLERDEAIAKLRQWWESKK 478 >gi|254447201|ref|ZP_05060668.1| poly(A) polymerase [gamma proteobacterium HTCC5015] gi|198263340|gb|EDY87618.1| poly(A) polymerase [gamma proteobacterium HTCC5015] Length = 434 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 17/234 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++NI++ LN+ ++ +VGG VRD L+ L +D D+AT+ PD V +F R Sbjct: 28 VLNIVARLNEAGHEAYLVGGCVRDLLIGLRPKDFDVATSATPDEVKALFRNCRL----VG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-----------DGRYAKVVFTRDWKADSLRRDFT 123 + I+ + + ++ T R+ + GR + D+ RRDF+ Sbjct: 84 RRFRLAHILLGRDFIEVATFRAGQESAGKKQAVAHSDSGRILSDNVYGSLEQDAFRRDFS 143 Query: 124 INALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY D + + ++DYVG + D+ R ++ IGD R ED +R+LR RF A G +I Sbjct: 144 VNALYFDVRDESIVDYVGAMADIEARQLRLIGDPDTRYREDPVRMLRAVRFAAKLG-FSI 202 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + + L+ + R++ E+ KLL++ + + ++ ++ + + + Sbjct: 203 EPHTEAPIRELSDHLEDIPPARLFDEVIKLLQSGHGVASLDGLWQHDLLRYLLP 256 >gi|194290641|ref|YP_002006548.1| poly(a) polymerase i [Cupriavidus taiwanensis LMG 19424] gi|193224476|emb|CAQ70487.1| poly(A) polymerase I [Cupriavidus taiwanensis LMG 19424] Length = 507 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 142/340 (41%), Gaps = 59/340 (17%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 38 PTLLSRNAVKVTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPEQVQSLFRRSR 97 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLR-------SDLITDGRYAKVVFTRDWK-- 114 + + + ++ +++T R S+ + +GR K Sbjct: 98 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKTHA 153 Query: 115 -----------------ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 D+ RRDFTINA+Y D + V DY G+ D+R RT++ IGD Sbjct: 154 IDASGRVLRDNVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDP 213 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A G +ID + + + S R++ E+ KLL + Sbjct: 214 ATRYREDPVRMLRVVRFAAKTG-FDIDEATRHPIAGLAELIHNVPSARLFDEMLKLLMSG 272 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ------------EISLDQLSQVIEAEQVFEWKIDSLL 264 + ++ + G+ K + + +++LD + ++A + + Sbjct: 273 HAWASLQELRKAGLHKGLLPLLDVALEQPMGQRFVQLALDNTDRRVQAGK----PVSPGF 328 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 F L+ + ++++ RE I+ N + Sbjct: 329 LFAALLWHH-------VLQRWTQLREEGEHAIAALNSAMD 361 >gi|204928349|ref|ZP_03219549.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322671|gb|EDZ07868.1| multifunctional CCA protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 413 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFTARYAHLSFRIADETLSLMRDMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|88854483|ref|ZP_01129150.1| poly(A) polymerase [marine actinobacterium PHSC20C1] gi|88816291|gb|EAR26146.1| poly(A) polymerase [marine actinobacterium PHSC20C1] Length = 474 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 83/465 (17%), Positives = 167/465 (35%), Gaps = 60/465 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K + + + N + +VGG VRD+ + +V D+D AT PD +MR+ Sbjct: 13 KLADSKPVATLAARFNAEGFELALVGGPVRDAFLGRAVTDLDFATNANPDEIMRLVKPIS 72 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINA 126 +GTI + +ITT R+D R V F + D RRDF++NA Sbjct: 73 EAQWDIGRDFGTIAARIDGESVEITTYRADSYNGASRKPVVAFGDSLEKDLERRDFSVNA 132 Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 + + ++D GGL L +T+ G +D LR++R RF + G + + Sbjct: 133 MALRLPERVLVDPWGGLEHLMTKTLTTPGSPEVSFGDDPLRMMRAARFTSQLG-FTVSPE 191 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + A + + I+S ER+ E+ KLL+ +P+ I + G+ + + ++ + L + Sbjct: 192 TVRAMTELSARIDIVSVERVSDELTKLLKTDDPVPGIRLLVESGLAEHVLPEIPALKL-E 250 Query: 246 LSQVIEAEQVFEWK-------------------IDSLLRFIVLISWQDKKSILSM----- 281 + + + V+E D +LR L+ K S + Sbjct: 251 VDEHAHHKDVYEHSLTVLRQAIGLEKSRAGIEGPDLILRLAALLHDIGKPSTRKIERGGV 310 Query: 282 -----------------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYL 319 + +E + + + + +++ Sbjct: 311 VTFHHHDVVGAKLVTKRLRALRFDKETITSVARLVELHLRFFGYTEGAWTDSAVRRYVRD 370 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFI--------LQVLSDIIHWKKPLFPLTGDDVV 371 GD++ + + N+ D + +++ L G++++ Sbjct: 371 AGDQLERLHIITRADVTTRNVRKADRLSFAYDDLEDRIAAIAEAEGLAAVRPDLDGEEIM 430 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + P ++VG + ++ L + LR + Sbjct: 431 AILDLKPSREVGEAYTFLLELRLDEG-PLGAAEAEERLRTWWSER 474 >gi|152971977|ref|YP_001337086.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166233861|sp|A6TE35|CCA_KLEP7 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|150956826|gb|ABR78856.1| tRNA nucleotidyl transferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 413 Score = 239 bits (610), Expect = 8e-61, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 146/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + + Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQSRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD LRRD T+NAL D G +ID GG Sbjct: 57 ---EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGAIIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDLR R ++ + A ED LR+LR RF A Y ++ L+A+I L Sbjct: 114 NDLRKRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMAAIVEAGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + K +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ L ++ ++MA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGLHTLM---------TVTMAAMLSPDVDVRFATL----CHDLGKGLTPKALWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCARLRVPN-DIRDLAKLVAEYHDLIHTLPILQPKT 318 >gi|308184427|ref|YP_003928560.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori SJM180] gi|308060347|gb|ADO02243.1| putative polynucleotide adenylyltransferase; putative poly(A) polymerase [Helicobacter pylori SJM180] Length = 402 Score = 239 bits (610), Expect = 8e-61, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 163/401 (40%), Gaps = 27/401 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKGLKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSAHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+TI+ +G A R ED LRILR RF A G K I A Sbjct: 125 SPTKGLIDPFKGQNAIENQTIECVGGARLRFFEDALRILRALRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFAQAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 S E+K L Y + L F AL + + ++ +KK L G Sbjct: 286 SKTELKFLLKNYDLEPFNLAL-DFYALKNPKHALKIKRLLKEIFDSNEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K + IL C I + L L++ Sbjct: 345 ALQSLGYQHQK-ISEILNACLNLVIEN---PKNNALEWLIK 381 >gi|301168656|emb|CBW28247.1| poly(A) polymerase I [Haemophilus influenzae 10810] Length = 452 Score = 239 bits (610), Expect = 8e-61, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SSYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|121533605|ref|ZP_01665432.1| Polynucleotide adenylyltransferase [Thermosinus carboxydivorans Nor1] gi|121307596|gb|EAX48511.1| Polynucleotide adenylyltransferase [Thermosinus carboxydivorans Nor1] Length = 302 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 4/217 (1%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT-SIS 76 IL+ L + I GGAVRD + V D DIAT+ P+ V I ++ ++V+ + Sbjct: 12 ILTALGANGYAAYIAGGAVRDLVAGRPVNDYDIATSARPEAVREIAARQGWQVVDKLGTN 71 Query: 77 YGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 YG + ++ ++ T R + R A+V + D RRDFT+NA+ D G Sbjct: 72 YGVVMVVVDGTGVEVATFRGERYGEDSHRPAEVWYADTITDDLSRRDFTVNAMAMDVAGN 131 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 +ID GG DL R I+ +GD + R ED LR+LR RF A G ID L A Sbjct: 132 IIDPFGGRRDLAARLIRTVGDPNRRFGEDALRMLRACRFAAQLG-FAIDDVTLAAIPANL 190 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 + LS ER+ E++KLL P + + G+ Sbjct: 191 GRMAGLSLERVRLELDKLLLGDYPHLGLAALVATGLA 227 >gi|239994852|ref|ZP_04715376.1| poly(A) polymerase I [Alteromonas macleodii ATCC 27126] Length = 439 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 70/398 (17%), Positives = 139/398 (34%), Gaps = 46/398 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++ + ++ LN +S +VGG VRD LM +D D+ T P+++ +F R Sbjct: 14 SANALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVVTNATPEQIKGLFRNCRL--- 70 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------------------DGRYAKVVFTRDW 113 + I+ ++ ++ T R G+ + Sbjct: 71 -IGRRFRLAHIVFGREIIEVATFRGHHQETDEDENLPKGKAVAKRDAHGQLVRDNVFGTI 129 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFT NA+Y V D+ GL + R ++ IGD R ED +R+LR R Sbjct: 130 EEDAERRDFTFNAMYYSVADFTVKDFANGLAAIEKREVELIGDPETRYREDPVRMLRAVR 189 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F G + I++ L+ + R++ E KL + + ++ G+ + Sbjct: 190 FAVKLGMR-IEAKTAAPIKSLANLLQNIPPARLFEETLKLFLSGKGEETFLMLHEYGLIE 248 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKID----------SLLRFIVLISWQDKKSILSMA 282 +F + D+ S+ ++ + D + L+ + ++ + Sbjct: 249 PLFPQLTPFLKDENSREMQFVRRVLANTDERINSDQRVTPAFLYAALLWYPVEEESQRLQ 308 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPE------------IKKLFYLYGDKVMIAKLK 330 + L + + S + + IP+ ++L +G + Sbjct: 309 SESGLNAHDAFNIASGEVIARQTQRIMIPKRFSTVVRDIWILQQRLPKRFGRRAFQLLTH 368 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 Y+ L + +L W G Sbjct: 369 PKFRAGYDFLLARGQIEGGDLLELAQWWTHFQHADNGK 406 >gi|109900234|ref|YP_663489.1| poly(A) polymerase [Pseudoalteromonas atlantica T6c] gi|109702515|gb|ABG42435.1| poly(A) polymerase [Pseudoalteromonas atlantica T6c] Length = 415 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 145/381 (38%), Gaps = 47/381 (12%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L L+ ++ +VGG VRD L+ +D D+ T P++V +F R + Sbjct: 2 LYRLHNNGYQAFLVGGCVRDILLGKKPKDFDVTTDATPEQVKELFRNCRL----IGRRFR 57 Query: 79 TIKIICRKKYFDITTLRSDL---------------ITDGRYAKVVFTRDWKADSLRRDFT 123 ++ ++ ++ T R G+ + + D+ RRDFT Sbjct: 58 LAHVVFGREVIEVATFRGHHPVEDENAKEQNLSKQSDHGQLLRDNVFGSIEEDAERRDFT 117 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NA+Y + + D+ G+ ++ R I IGD R ED +R+LR RF G K I Sbjct: 118 VNAMYYNIADYSIHDFANGMEAVKKRQITMIGDPATRYREDPVRMLRAVRFAVKLGMK-I 176 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + + + + R++ E+ KLL + L + G+F+++F + + Sbjct: 177 SPETAKPMYELAPLMANIPPARLFEEVLKLLLSGQGLETYKLLNEFGLFEQLFPQLTPLL 236 Query: 243 LDQLSQVIEA-EQVF---------EWKIDSLLRFIVLISWQDKK--------------SI 278 Q S+ + EQV + K+ F L+ + ++ Sbjct: 237 KSQNSRELAFIEQVLMNTDNRINSDMKVTPAFIFAALLWYPLEERCQQHMVEGGLNHFDA 296 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 ++A L R+I+ +I ++ + ++L YG + Y+ Sbjct: 297 FNLALSDVLHRQIQRIMIPKRFTITVREIWQL--QQRLPKRYGRRAFQMLEHPKFRAAYD 354 Query: 339 NLTHQDTCFILQVLSDIIHWK 359 L + ++L+ W Sbjct: 355 FLLIRGQIEGGELLTLAQWWT 375 >gi|28493767|ref|NP_787928.1| poly(A) polymerase [Tropheryma whipplei str. Twist] gi|28476809|gb|AAO44897.1| poly(A) polymerase [Tropheryma whipplei str. Twist] Length = 484 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 96/459 (20%), Positives = 174/459 (37%), Gaps = 60/459 (13%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K H+ ++ + + + +VGG VRD ++ V D+D AT P +R+ Sbjct: 21 QKLSHEDSVLALTAAFCAKNYELALVGGPVRDCFLDRPVVDLDFATNATPQETLRLVKPI 80 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125 T YGT+ + + +ITT RSD + R KV F + D +RRDFT+N Sbjct: 81 SSGCWTTGARYGTVSARVKGRVVEITTYRSDNYSANTRKPKVSFGGSLEEDLIRRDFTVN 140 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ G+++D GL D+ N+ + +D LR+LR R + G K I Sbjct: 141 AMAFRVPSGQLVDISSGLQDIANKRLATPIKPELSFADDPLRMLRAARLSSQLGFK-ISE 199 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + L+A K LKI+S+ER+ E KLL +P ++ + N G+ ++ + L+ Sbjct: 200 NSLLAMKDCAKRLKIVSAERVRGEFEKLLCCADPTGSLRVLVNTGLINHFLPEISALRLE 259 Query: 245 ----------------QLSQVIEAEQ-VFEWKIDSLLRFIVLISWQDKKSILS------- 280 L Q I+ EQ F D +LR L+ K + Sbjct: 260 IDEHFHHKDVYEHSLIVLRQAIKLEQERFRNGPDLVLRLAALMHDIGKPATRRKHPDGSV 319 Query: 281 ------------MAKKF---SLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLY 320 +K+ + + + + + ++ + +++ Sbjct: 320 TFYHHDTVGAKMASKRLAAMRFDKNVIFAVTRLIQLHLRFFGYGDQSWTDSAVRRYVRDA 379 Query: 321 GDKVMIAKLKIFL----------ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 G + + +L I + + + L + L G+++ Sbjct: 380 GPQ--LERLHILTRADVTTRNQNKARRLRAAYDNLEERIAKLREQEELDAIRPELNGEEI 437 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + + PGK+VG + +++ QE LL Sbjct: 438 MSLLDLKPGKEVGVAYKYLLDLRLDNGPIGKQESARKLL 476 >gi|187929930|ref|YP_001900417.1| poly(A) polymerase [Ralstonia pickettii 12J] gi|187726820|gb|ACD27985.1| poly(A) polymerase [Ralstonia pickettii 12J] Length = 521 Score = 238 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + + IVGGAVRD L+ + +D D+AT PD+V +F ++R Sbjct: 67 PKLLSRNAVKVTSTLQEAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSR 126 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 127 I----IGRRFQIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHA 182 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y D + V DY G+ D+R RT++ IGD Sbjct: 183 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYDPADETVHDYHHGMEDMRARTLRMIGDP 242 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 H R ED +R+LR RF A G +ID D + + + + R++ E+ KLL + Sbjct: 243 HTRYREDPVRMLRVVRFAAKTG-FDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSG 301 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + + +++L+Q Sbjct: 302 HAWASLQELRKAGLHRGLLP-LLDVALEQ 329 >gi|116331148|ref|YP_800866.1| poly A polymerase family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124837|gb|ABJ76108.1| Poly A polymerase family of protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 432 Score = 238 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 110/421 (26%), Positives = 196/421 (46%), Gaps = 34/421 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D+I I + K + ++GG+VRD L++ + D+ T++LPD+++ +F +T +P Sbjct: 19 EDIIRITQNIRKEGGECYLIGGSVRDLLLSKIPDEFDLTTSLLPDKILTLFKRT----VP 74 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T I +GT+ ++ + + ++ITT R D+ DGR + V F D RRDFT+NAL D Sbjct: 75 TGIKHGTVTVLIQDRSYEITTFRKDVDYIDGRRPEAVKFGVSLSEDLKRRDFTMNALALD 134 Query: 131 -QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++ID GL D++N+ I+ IGD R ED LR +R RF + G ++S+ A Sbjct: 135 LEAKRLIDEHSGLEDIQNKIIRTIGDPIERFTEDGLRPIRAIRFVSSLG-FALESETAKA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I+ + +S ER+ E+NK L++KNP ++ I + +F ++ + + Sbjct: 194 IIQCRNITAKISKERVHDELNKTLKSKNPAPSLKLFKEFRILE-LFTSLKLYPTENTNVE 252 Query: 250 IEAEQVFEWKIDSLLRFIVLISW-----QDKKSILSMAKKFSLPREIRYFLISFFNCNF- 303 + +V + LR L +W QD+ S K + + F + F Sbjct: 253 KKIREV--PVVPLSLRLSFLHAWLFGSFQDRNSAKQFMKDLRYSNQNTKDSLFFSDMLFM 310 Query: 304 -----NQKTLSIPEIKKL-FYLYGDKVMIAKLKIF------LALHYNNLTHQ--DTCFIL 349 + +L+ EI+K + L+I LA Y + D IL Sbjct: 311 MLNRKDDASLTDAEIRKAVLHPICVYAGRENLRILTEYILNLAYTYEPILKDIFDFRRIL 370 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + L G+D+++ +PP K++G++L + + + ++ L L Sbjct: 371 DLTERSQALVVTELALRGEDILRACPNLPP-KQIGSVLEKLLFHVLENPDENRKDFLFPL 429 Query: 408 L 408 L Sbjct: 430 L 430 >gi|261380692|ref|ZP_05985265.1| poly(A) polymerase [Neisseria subflava NJ9703] gi|284796403|gb|EFC51750.1| poly(A) polymerase [Neisseria subflava NJ9703] Length = 450 Score = 238 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H I L++ ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++ Sbjct: 32 HADMLSFAAEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKIFRRS 91 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDF 122 R + + ++ + ++TT R GR K + D++RRDF Sbjct: 92 RI----IGRRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMRRDF 147 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T NALY D + ++ D+ G+ D+ ++ + IG+ R ED +RILR R G Sbjct: 148 TCNALYYDPIKEEIWDFHQGVADVADKKLVMIGNPAERYQEDPVRILRAVRLSGKLG-FE 206 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ + + LK R++ EI K+L + + + + GI + I + + Sbjct: 207 VEEQTALPIAEYAGRLKNEPVARLFDEIMKILFSGHSRACLKRLNELGIPEGIHPLLDAL 266 Query: 242 SLDQ 245 + Sbjct: 267 KTAE 270 >gi|241760511|ref|ZP_04758604.1| poly(A) polymerase [Neisseria flavescens SK114] gi|241319015|gb|EER55517.1| poly(A) polymerase [Neisseria flavescens SK114] Length = 450 Score = 238 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 10/236 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I L++ ++ +VGGAVRD L+ + +D DIAT P+++ ++F ++R Sbjct: 40 AEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKVFRRSRI----IG 95 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 96 RRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMRRDFTCNALYYD 155 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++ D+ G+ D+ ++ + IGD R ED +RILR R G ++ + Sbjct: 156 PIKEEIWDFHQGVADVADKKLVMIGDPAERYQEDPVRILRAVRLSGKLG-FEVEEQTALP 214 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + LK R++ EI K+L + + + + GI + I + + + Sbjct: 215 IAEYAGRLKNEPVARLFDEILKILFSGHSRACLKRLNELGIPEGIHPLLDALKTAE 270 >gi|198283568|ref|YP_002219889.1| poly(A) polymerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248089|gb|ACH83682.1| poly(A) polymerase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 497 Score = 238 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 15/242 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F + + Sbjct: 54 ALQVLNGLHRAGFQAYLVGGSVRDLLLGREPKDFDVATDAHPEQVRKLFRRNARLI---G 110 Query: 75 ISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + + + + ++ T R S+ GR + D+ RRDFT Sbjct: 111 RRFILVHVQFGNEIIEVATFRGSANGKEDESSEHSETGRILADNVYGSLEEDARRRDFTA 170 Query: 125 NALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY + + ++D+ G+ DL+ ++ IGD R ED +R+LR RF A G +D Sbjct: 171 NALYYNIADRSILDFSTGMEDLQAGRLRVIGDPEQRYREDPVRMLRAVRFAAKLG-FTLD 229 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + +K L+ + S R++ E KL N + H+ G+F +F V + Sbjct: 230 AAAQAPIAACRKLLQEVPSARLFEETLKLFLTGNAQTSFEHLRQMGLFAALFPQVDALLD 289 Query: 244 DQ 245 D Sbjct: 290 DA 291 >gi|163752814|ref|ZP_02159938.1| tRNA nucleotidyltransferase [Kordia algicida OT-1] gi|161326546|gb|EDP97871.1| tRNA nucleotidyltransferase [Kordia algicida OT-1] Length = 474 Score = 238 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 81/457 (17%), Positives = 172/457 (37%), Gaps = 70/457 (15%) Query: 16 INILSLLNKGEDK----SCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSK--TRY 68 ++I S ++K + + ++GG VRD L+ +DID+ + + + Sbjct: 9 LDIFSTISKAATELQLETYVIGGFVRDFLLKRGDAKDIDVVAVGSGIELAKKVASLLPNK 68 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + +YGT + ++ + R + G V + D RRDF+INA+ Sbjct: 69 PKVQVFKNYGTAMVKTKEIEVEFVGARKESYERGSRNPAVENGTLQDDQNRRDFSINAMA 128 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G ++D GGL DL+N+ I D +D LR++R RF + ID Sbjct: 129 LSLNEKTFGDLLDPFGGLEDLKNKRIVTPLDPDITYSDDPLRMMRAIRFATQL-DFKIDP 187 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SL 243 L A + +KI+S ERI E+NK+L + P + + + I ++ + + Sbjct: 188 VSLEAITRNSDRIKIISKERIVVELNKILMSNKPSIGFILLEKTKLLPYILPELSALKGI 247 Query: 244 DQLSQVIEAEQVFE----------WKIDSLLRFIVLISWQDK------------------ 275 D++ + + + LR+ L+ K Sbjct: 248 DEIEGQKHKDNFYHTLEVVDNICPHTDNVWLRWAALLHDIGKAPTKRFSKKVGWTFHGHE 307 Query: 276 ----KSILSMAKKFSLPREIR------YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 K + + K+ +P + ++S +Q ++ +++L + D V Sbjct: 308 FVGGKMVHKLFKRLHMPLNEKVKYVQKLVMMSSRPIVLSQDGVTDSAVRRLVFDASDHV- 366 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK 372 + + L ++T ++ + + + + P++G+++++ Sbjct: 367 ----EDLMTLCEADITTKNPRKFERYHNNFKIVREKIVEVEERDQVRNFQPPVSGEEIME 422 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + + P +++G I K+ + E H + Sbjct: 423 TFNLKPSREIGIIKDAIKEAILEGEIPNEYEAAHAYM 459 >gi|319638160|ref|ZP_07992923.1| PolyA polymerase [Neisseria mucosa C102] gi|317400433|gb|EFV81091.1| PolyA polymerase [Neisseria mucosa C102] Length = 450 Score = 238 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H I L++ ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++ Sbjct: 32 HADMLSFAAEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKIFRRS 91 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDF 122 R + + ++ + ++TT R GR K + D++RRDF Sbjct: 92 RI----IGHRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMRRDF 147 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T NALY D + ++ D+ G+ D+ ++ + IG+ R ED +RILR R G Sbjct: 148 TCNALYYDPIKEEIWDFHQGVADVADKKLVMIGNPAERYQEDPVRILRAVRLSGKLG-FE 206 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ + + LK R++ EI K+L + + + + GI + I + + Sbjct: 207 VEEQTALPIAEYAGRLKNEPVARLFDEIMKILFSGHSRACLKRLNELGIPEGIHPLLDAL 266 Query: 242 SLDQ 245 + Sbjct: 267 KTAE 270 >gi|145636731|ref|ZP_01792397.1| polyA polymerase [Haemophilus influenzae PittHH] gi|145270029|gb|EDK09966.1| polyA polymerase [Haemophilus influenzae PittHH] Length = 452 Score = 238 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D++R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SSYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|213962517|ref|ZP_03390779.1| tRNA nucleotidyltransferase [Capnocytophaga sputigena Capno] gi|213954843|gb|EEB66163.1| tRNA nucleotidyltransferase [Capnocytophaga sputigena Capno] Length = 469 Score = 238 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 89/438 (20%), Positives = 164/438 (37%), Gaps = 70/438 (15%) Query: 28 KSCIVGGAVRDSLMNLS-VQDIDIATTI----LPDRVMRIFSKTRYKVIPTSISYGTIKI 82 +S ++GG VRD L+ +DIDI + L ++V + ++GT I Sbjct: 25 ESYVIGGFVRDYLLKKKLPKDIDIVSIGSGISLAEKVAEQLPNN--PKVSIFKNFGTAMI 82 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDY 138 + R + V + + D RRDFTINA+ D G +ID Sbjct: 83 KADGLDIEFVGARRESYESNSRKPYVESGTLQDDQNRRDFTINAMAFSLNKDTFGDLIDP 142 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL + I+ + +D LR++R RF I+ L A K+ LK Sbjct: 143 FDGLGDLERKLIRTPLNPDITYSDDPLRMMRAIRFATQLN-FEIEEQSLKAITDNKERLK 201 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLDQLSQ 248 I+S+ERI E+NK+L + P + +Y G+ I ++ + D Sbjct: 202 IISNERIVEELNKILASPKPSIGLKLLYETGLLHYILPELIALQGVQEQDGQRHKDNFWH 261 Query: 249 VIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKK----------------FSLPREI 291 +E D+L LR+ L+ K KK + L + + Sbjct: 262 TLEVVDNISEHTDNLWLRWAALLHDIGKAPTKRFDKKIGWTFHGHEFVGSKMVYHLFKRL 321 Query: 292 RYFL------------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 R L +S + ++ +++L + G++ + + L + Sbjct: 322 RMPLNDKMKYVQKIVKMSSRPIIIAEDIVTDSAVRRLVFDAGEE-----FEDLMTLCEAD 376 Query: 340 LTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 +T ++ + + + H + P++G++++K + +PP + VG + Sbjct: 377 ITTKNPKKFKKYHDNFQIVRQKVVEVEEKDHIRNFQPPVSGEEIMKTFNLPPSRPVGVLK 436 Query: 386 VHCKQEWINSSFQLSQED 403 K+ + E Sbjct: 437 EAIKEAILEGKIPNEYEA 454 >gi|161506232|ref|YP_001573344.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189081876|sp|A9MPV9|CCA_SALAR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|160867579|gb|ABX24202.1| hypothetical protein SARI_04425 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 413 Score = 238 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPWHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + D+ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADDTLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDLGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEFHDLIHTFPILQPKT 318 >gi|300726837|ref|ZP_07060267.1| polyA polymerase family protein [Prevotella bryantii B14] gi|299775950|gb|EFI72530.1| polyA polymerase family protein [Prevotella bryantii B14] Length = 488 Score = 238 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 83/471 (17%), Positives = 172/471 (36%), Gaps = 80/471 (16%) Query: 10 FHDSDLINILS--LLNKGED-------KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 ++DL IL + +K + +VGG VRD + DID+ V Sbjct: 4 LSNADLAKILDKDIFHKISYAADSLQLECYVVGGYVRDLFLERPSNDIDVVVVGSGIAVA 63 Query: 61 RIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + K ++GT ++ + + R + + +V D Sbjct: 64 EKLRQELGKKAHISVFKNFGTAQVKYKGMEVEFVGARKESYSHDSRKPIVENGTLDDDQN 123 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL ++ G+++D GL D+ + I D +D LR++R RF Sbjct: 124 RRDFTINALAVCLNKERFGELVDPFDGLLDMEDGIIATPLDPDVTFSDDPLRMMRCIRFA 183 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + I+ A + LKI+S+ERI E+NK++ + +P + +++ G+ K I Sbjct: 184 TQLNFQ-IEDVTYEALSRNADRLKIISAERIADELNKIMLSPHPSVGLYYLHETGLLKLI 242 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSL-------------------------LRFIVL 269 ++ + + ++ + F+ ++ L LR+ L Sbjct: 243 IPELDIMDVVEIRNGRGHKNNFDHTLEVLENVCKAQLAKNEVEPKIVSINTKLWLRWAAL 302 Query: 270 IS----------------------WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQK 306 + K I S+ ++ LP ++ + Sbjct: 303 FHDIGKPKSKRWDNVAGWTFHNHNFLGAKMIPSIFRRMKLPMGAEMKYVQKMVELHMRPI 362 Query: 307 TLSIPE-----IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVL 352 ++ E +++L GD + + + A + + F+ L L Sbjct: 363 VIADEEVTDSAVRRLLNDAGDDI-DDLMMLCEADITSKNAIRKQHFLDNFRVVREKLAEL 421 Query: 353 SDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + + + + G+++++ + P ++VG + K +++ +E Sbjct: 422 KEKDYKRLLQPVIDGNEIMEMFHLVPSREVGTLKQTLKDAVLDNKVANERE 472 >gi|298207805|ref|YP_003715984.1| tRNA nucleotidyltransferase [Croceibacter atlanticus HTCC2559] gi|83850443|gb|EAP88311.1| tRNA nucleotidyltransferase [Croceibacter atlanticus HTCC2559] Length = 477 Score = 238 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 86/461 (18%), Positives = 168/461 (36%), Gaps = 66/461 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSK- 65 I + + S ++GG VRD L+ +DID+ T + + + Sbjct: 11 DALTHPVFKTIATASEELGLSSYVIGGFVRDFLLKRGNAKDIDVVTIGNGIALAKKVANL 70 Query: 66 -TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + +YGT + + R + ++ V + D RRDFTI Sbjct: 71 LPNKPKVKVFKTYGTAMLETGDIEVEFVGARKESYSEDSRNPSVEPGTLEDDQNRRDFTI 130 Query: 125 NALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 NAL G ++D G+ DL N IK + +D LR+LR RF + Sbjct: 131 NALALSLNKENFGDILDPFNGIEDLANGVIKTPLNPDITYSDDPLRMLRAIRFASQLDFF 190 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I D L A + + +KI++ ER+ +EINK+L + P + + I ++ Sbjct: 191 -IQEDSLNAITRNNERIKIITKERVVTEINKILLSTTPSKGFALLRKTELLPHILPELTA 249 Query: 241 I----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDK-------------- 275 + D +E D+L LR+ L+ K Sbjct: 250 LQGIDEKEGQRHKDNFWHTLEVVDNIAKHTDNLWLRWAALLHDIGKAPTKKFHKKIGWTF 309 Query: 276 --------KSILSMAKKFSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLYG 321 K + + K+ +P + L+S ++ ++ +++L + G Sbjct: 310 HGHEFVGSKMVYKLFKRLKMPLNDKMKFVQKMVLMSSRPIVISEDHVTDSAVRRLIFDAG 369 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGD 368 D + + + L ++T ++ + + + H + P++G+ Sbjct: 370 DYI-----EDLMTLCEADITTKNPKRYRRYHRNFEVVRTKIKEVEERDHIRNFQPPVSGE 424 Query: 369 DVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++++ + I PG+++G I KQ ++ E + Sbjct: 425 EIMETFKIKPGREIGQIKESIKQAILDGKIPNEYEAAKAYM 465 >gi|134095805|ref|YP_001100880.1| poly(A) polymerase I [Herminiimonas arsenicoxydans] gi|133739708|emb|CAL62759.1| Poly(A) polymerase [Herminiimonas arsenicoxydans] Length = 453 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 12/227 (5%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++ I + S L + K+ +VGGAVRD L+ + +D DIAT P++V ++F + Sbjct: 34 PKLVSANAIRVTSTLQEAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKKLFRRA- 92 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLI------TDGRYAKVVFTRDWKADSLRRD 121 + + ++ + ++TT R GR + + D+LRRD Sbjct: 93 ---FIIGKRFQIVHVMFGQDLLEVTTFRGSSSDGAPKDEHGRVLRDNTFGEQHEDALRRD 149 Query: 122 FTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINA+Y D + V+DY GG+ D+R RT++ IG R ED +R+LR RF A Sbjct: 150 FTINAMYYDPATQTVLDYHGGIADIRTRTLRIIGVPEARYREDPVRLLRVVRFAAKLN-F 208 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 I D + + + R++ E+ KLL + + L + + Sbjct: 209 AIAPDTSAPIAVMAPLINNVPTARVFDEMLKLLMSGHALACLQQLRK 255 >gi|124003434|ref|ZP_01688283.1| tRNA nucleotidyltransferase [Microscilla marina ATCC 23134] gi|123991003|gb|EAY30455.1| tRNA nucleotidyltransferase [Microscilla marina ATCC 23134] Length = 478 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 85/454 (18%), Positives = 172/454 (37%), Gaps = 59/454 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR--Y 68 ++ L + + + ++ +VGG VRD ++ +DIDI + + ++ Sbjct: 9 NNPLLETVAKVAQQTGLETYVVGGFVRDLILKRPSKDIDIVCVGSGIELAKAVAEELPDK 68 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + ++GT +I + + R + +V + D RRDFTINAL Sbjct: 69 PQVNYFKNFGTAQIKAQDWELEFVGARKESYQRNSRKPIVENGTLEDDQNRRDFTINALA 128 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ G+VID GG+ L R IK D +D LR++R RF + +I+ Sbjct: 129 ISLQANNYGEVIDPFGGIKHLEQRVIKTPLDPDITFSDDPLRMMRAMRFATQL-KFDIEP 187 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SL 243 + + K K+ +KI+S ERI E+NK++ A P ++ + IF ++ ++ + Sbjct: 188 NTFESIQKNKERIKIVSQERITVELNKIVAASVPSYGFKLLFYAELLHLIFPEMVDLHGV 247 Query: 244 DQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSILSMAK---------- 283 D + + F D LR+ ++ K K Sbjct: 248 DVVEGKAHKDNFFHTLQVLDNVAKVSDDLWLRWSAIMHDIAKPVTKRFDKRAGWTFHGHE 307 Query: 284 ------------KFSLP-REIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVM 325 + LP + F+ + + ++ I++L + GD Sbjct: 308 DKGAKMVPHIFRRLKLPMNDRMRFVQKLVRLHLRPIPLFRDHITDSAIRRLLFDAGDD-- 365 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQV----------LSDIIHWKKPLFPLTGDDVVK-YG 374 I L + + H+ L+ + + + +TG+ +++ + Sbjct: 366 IDALMMLCRADITSKNHEKVKRFLKNFDVVERKLKEIEEKDRMRNFQPVITGEVIMEAFD 425 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + P ++VG I ++ ++ + E+ + Sbjct: 426 LKPSREVGLIKTAVREAVLDGEIRNEIEEAFAFM 459 >gi|319896476|ref|YP_004134669.1| poly polymerase [Haemophilus influenzae F3031] gi|317431978|emb|CBY80326.1| probable poly polymerase [Haemophilus influenzae F3031] Length = 452 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SSYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|219870496|ref|YP_002474871.1| polyA polymerase [Haemophilus parasuis SH0165] gi|219690700|gb|ACL31923.1| polyA polymerase [Haemophilus parasuis SH0165] Length = 477 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 82/426 (19%), Positives = 156/426 (36%), Gaps = 55/426 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 S+ I I++ L K + +VGG +RD L+ +D DIAT P+ + +IF + R Sbjct: 51 SNAIAIINKLQKNGYEVYMVGGCIRDLLLGQKAKDFDIATNARPEEIQKIFGRQCRL--- 107 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ ++ +++ T R+D G + + D+ RR Sbjct: 108 -IGRRFRLAHIVFGREIYEVATFRADHHSNATEKMSKTSEAGMLLRDNVYGTLREDAERR 166 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++NA Y D +I D+ G++DL+ + IGD R ED +R+LR RF A Sbjct: 167 DFSVNAFYYDVSHNLIYDFFNGIDDLKAGKLALIGDPVTRYQEDPVRMLRAIRFMAKLDM 226 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D K LK + + R++ E KLL++ + G+F+++F + Sbjct: 227 F-LDKASDEPIRKMAVLLKNIPAARLFDESLKLLQSGYGHKTYELLRKYGLFEQLFPVLS 285 Query: 240 EISLD------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + L+ E + + +++ F L+ + ++ I + + L Sbjct: 286 PFFTEYGDSNSERMISKALNSTDERIRD-DLRVNPAFLFAALLWYPLREKIDELKNQGGL 344 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 L + N+ + L Y + F Q T Sbjct: 345 NSHDAMMLAA------NEILAESVKAVALHRRYTTVIRDIWSLQFQFPKRTGKRPQQTLE 398 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLH 405 ++ + + G D+V W F + ++ Sbjct: 399 HIKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNEAQRAEML 442 Query: 406 HLLRKL 411 +++L Sbjct: 443 KTVKQL 448 >gi|153216761|ref|ZP_01950601.1| poly(A) polymerase [Vibrio cholerae 1587] gi|124114149|gb|EAY32969.1| poly(A) polymerase [Vibrio cholerae 1587] Length = 417 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 115/257 (44%), Gaps = 20/257 (7%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L L+ ++ +VGG VRD L+ +D D+AT P+++ ++F R + Sbjct: 2 LYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL----IGRRFR 57 Query: 79 TIKIICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLRRDFTINA 126 I+ + ++ T R G + D+ RRDFTINA Sbjct: 58 LAHIMFGRDIVEVATFRGHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINA 117 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 +Y + + DY GG+ DL +R ++ IGD R ED +R+LR RF + +I+ D Sbjct: 118 MYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFDIEED 176 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + L+ + + R++ E K+L+A + L M +F+++F + E Sbjct: 177 TAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEHFTAD 236 Query: 246 LSQVIEAEQVFEWKIDS 262 S + EQ+ + +D+ Sbjct: 237 HSS--KTEQMLDLVLDA 251 >gi|113971232|ref|YP_735025.1| metal dependent phosphohydrolase [Shewanella sp. MR-4] gi|123324780|sp|Q0HG49|CCA_SHESM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|113885916|gb|ABI39968.1| metal dependent phosphohydrolase [Shewanella sp. MR-4] Length = 416 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 78/349 (22%), Positives = 147/349 (42%), Gaps = 31/349 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D P++++++ + K P + T + Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDFMVVGATPEQMLQLGYRQVGKDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINA+ D+ G + D G+ Sbjct: 57 ---EYALARTERKVGLGYGGFSCYASPEVTLEQDLLRRDLTINAIAQDEAGNLHDPFHGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLVASIKAKKGLK 198 D+ R ++ + A ED LR+LR RF A + E ++ L+ + + L Sbjct: 114 ADIEARQLRHVSAA---FSEDPLRVLRVARFAARFHGLGFEIAPETMALMQHMSQTEELT 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E++K L +P + G K +F ++ D L V + E+ + Sbjct: 171 ALTPERVWQEVDKSLGGPHPEVFFEVLRQCGALKVLFPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEIKKL 316 +ID+ L +++++ + + +L ++ L + + +P IK L Sbjct: 225 EIDTGLHTMMVLAQSSSMTEEKAVRFAALVHDLGKALSPKEHWPKHHGHGQKGLPVIKSL 284 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362 L + ++ + N+ + I+++ W+KP Sbjct: 285 CERLRVPNEYRDLALLVSDQHQNVHQAFELRSETIIKLFDKADFWRKPE 333 >gi|28572951|ref|NP_789731.1| RNA nucleotidyltransferase [Tropheryma whipplei TW08/27] gi|28411084|emb|CAD67469.1| putative RNA nucleotidyltransferase [Tropheryma whipplei TW08/27] Length = 478 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 96/459 (20%), Positives = 174/459 (37%), Gaps = 60/459 (13%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K H+ ++ + + + +VGG VRD ++ V D+D AT P +R+ Sbjct: 15 QKLSHEDSVLALTAAFCAKNYELALVGGPVRDCFLDRPVVDLDFATNATPQETLRLVKPI 74 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTIN 125 T YGT+ + + +ITT RSD + R KV F + D +RRDFT+N Sbjct: 75 SSGCWTTGARYGTVSARVKGRVVEITTYRSDNYSANTRKPKVSFGGSLEEDLIRRDFTVN 134 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A+ G+++D GL D+ N+ + +D LR+LR R + G K I Sbjct: 135 AMAFRVPSGQLVDISSGLQDIANKRLATPIKPELSFADDPLRMLRAARLSSQLGFK-ISE 193 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + L+A K LKI+S+ER+ E KLL +P ++ + N G+ ++ + L+ Sbjct: 194 NSLLAMKDCAKRLKIVSAERVRGEFEKLLCCADPTGSLRVLVNTGLINHFLPEISALRLE 253 Query: 245 ----------------QLSQVIEAEQ-VFEWKIDSLLRFIVLISWQDKKSILS------- 280 L Q I+ EQ F D +LR L+ K + Sbjct: 254 IDEHFHHKDVYEHSLIVLRQAIKLEQERFRNGPDLVLRLAALMHDIGKPATRRKHPDGSV 313 Query: 281 ------------MAKKF---SLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLY 320 +K+ + + + + + ++ + +++ Sbjct: 314 TFYHHDTVGAKMASKRLAAMRFDKNVIFAVTRLIQLHLRFFGYGDQSWTDSAVRRYVRDA 373 Query: 321 GDKVMIAKLKIFL----------ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 G + + +L I + + + L + L G+++ Sbjct: 374 GPQ--LERLHILTRADVTTRNQNKARRLRAAYDNLEERIAKLREQEELDAIRPELNGEEI 431 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + + PGK+VG + +++ QE LL Sbjct: 432 MSLLDLKPGKEVGVAYKYLLDLRLDNGPIGKQESARKLL 470 >gi|33151792|ref|NP_873145.1| polyA polymerase [Haemophilus ducreyi 35000HP] gi|33148013|gb|AAP95534.1| polyA polymerase [Haemophilus ducreyi 35000HP] Length = 523 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 18/237 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + + I+ L+K ++ +VGG +RD L+ +D+DIAT P+ + +IF + R Sbjct: 101 KNALAIVEKLDKAGYEAYLVGGCIRDLLLGHKAKDVDIATNAKPEEIQKIFGRQCRL--- 157 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ ++ +++ T R+D + G + D+ RR Sbjct: 158 -IGRRFRLAHIVFGREIYEVATFRADHSITASDKISKISDQGMLLRDNVYGSLSDDAERR 216 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+NALY D + ++I D+ G+NDL++ ++ IG+ R ED +R+LR RF A Sbjct: 217 DFTVNALYYDPKRQLIFDFFDGINDLKHAKLRLIGNPVTRYQEDPVRMLRAVRFMAKLDM 276 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 +D + LK + + R++ E KLL++ M G+F+++F Sbjct: 277 F-LDKPSDAPIYELASLLKNIPAARLFDESLKLLQSGQGFKTYQLMRQYGLFEQLFP 332 >gi|319789869|ref|YP_004151502.1| Polynucleotide adenylyltransferase region protein [Thermovibrio ammonificans HB-1] gi|317114371|gb|ADU96861.1| Polynucleotide adenylyltransferase region protein [Thermovibrio ammonificans HB-1] Length = 881 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 85/415 (20%), Positives = 165/415 (39%), Gaps = 25/415 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + I + + + +VGG VRD ++ DIDI + +K + T Sbjct: 466 IERIGEVAQELGLNAYLVGGFVRDLVIGRKNFDIDIVVEGDAVTFSKEVAKRLGAKVHTF 525 Query: 75 ISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----A 129 + T +I + D+ + R++L V T K D +RRDFTIN L Sbjct: 526 ERFKTATLIFPEGLRIDLASARTELYRSPGALPEVDTAPLKKDLMRRDFTINTLAVKINP 585 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLV 188 + G++ID+ GGL D++ R I+ + +ED RILR RF Y ++ L+ Sbjct: 586 SEFGRLIDFFGGLRDIKERKIRVLH--SLSFVEDPTRILRALRFATRYRFELGRHTERLL 643 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----QEISL 243 +K K + +RI+ E+ ++L +NPL + + G+ E+F + ++ Sbjct: 644 KMAVERKLFKTVEGQRIYHELKQILLEENPLRVFLKLDRYGVLAELFPGLRWDREKKDLF 703 Query: 244 DQLSQVIEAEQVFEWKIDS-----LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 +++ + + ++ K+ L+ + L + + + +LP + L++ Sbjct: 704 EKVRKSVIWHKLNFPKLSPDTDYHLVYLLALFWGEPENRVKEYLAALTLPGKEERELLNL 763 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + YL + +L IFL+ + + L I Sbjct: 764 LKRARELLPRLESADRNSTYLSLLESAPEELLIFLSAVSPPEVSEKVREVATRLRYI--- 820 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS-QEDLHHLLRKLI 412 ++G+D+ G+ PG +L K + +E+ L++L+ Sbjct: 821 ---KPLVSGNDIKALGLKPGPVFSELLRRVKYAVADGELPPDSREEQLAYLKELV 872 >gi|86743206|ref|YP_483606.1| metal dependent phosphohydrolase [Frankia sp. CcI3] gi|86570068|gb|ABD13877.1| metal dependent phosphohydrolase [Frankia sp. CcI3] Length = 502 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 93/465 (20%), Positives = 168/465 (36%), Gaps = 72/465 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLS--------VQDIDIATTILPDRVMRIFS 64 + + +VGG+VRD+L+ D+D AT P+RV+ I Sbjct: 23 PAADELGRVFTANGYLLHLVGGSVRDALLGRPASAVSGAVPADLDFATDARPERVLEITR 82 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFT 123 I++GT+ + F+ITT RS+ R V + +AD RRDFT Sbjct: 83 GWAEATWEAGIAFGTVGLARHGVRFEITTYRSEAYDRKSRNPAVTYGDSLEADLSRRDFT 142 Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NA+ G +D GG+ DL ++ +D LRILR RF A G Sbjct: 143 VNAMAVSVPGHDFVDLFGGMADLARGVLRTPASPEASFDDDPLRILRAARFEAALG-LTP 201 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + + A L ++S ERI E+ KL+ A +P+ + + GI + +V + Sbjct: 202 VPELVAAMRSRADRLAVVSPERIRDELRKLMSAPDPVAGLERLVEVGIADIVLPEVSAMR 261 Query: 243 LDQLSQVIEAEQVFEW---------------KIDSLLRFIVLISWQDKKSILS------- 280 + ++ + + + V+ + D +LR+ L+ K Sbjct: 262 M-EIDEHHQHKDVYAHTMTVLRQAMTLEEPGEPDEVLRWAALLHDIGKPRTRRHMTGGRV 320 Query: 281 -----------MAKK----FSLPREIRYFLISFFNCNFNQKTLSI--------------- 310 MA++ P+++ + + Sbjct: 321 SFHHHEVVGRDMARRRLAALHFPKDVTDAVCRLVYLHLRFHGYGAGEWTDAAVRRYVHDA 380 Query: 311 -PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 P++ +L L + AL + ++ L +I + L+GDD Sbjct: 381 GPQLSRLHKLVRSDCTTRNRRKAAALSRTYDSLEERIAELAAREEIAAIRPE---LSGDD 437 Query: 370 VVKY-GIPPGKKVGNILVHCKQEWINSSF---QLSQEDLHHLLRK 410 ++ G+PP + VG H + + ++ +L R+ Sbjct: 438 IMVLLGLPPSRLVGQARSHMLEFRFEHGIVGREAAEAELFRWARE 482 >gi|145633375|ref|ZP_01789105.1| polyA polymerase [Haemophilus influenzae 3655] gi|145635248|ref|ZP_01790952.1| polyA polymerase [Haemophilus influenzae PittAA] gi|229845401|ref|ZP_04465532.1| probable poly polymerase [Haemophilus influenzae 6P18H1] gi|144985938|gb|EDJ92540.1| polyA polymerase [Haemophilus influenzae 3655] gi|145267527|gb|EDK07527.1| polyA polymerase [Haemophilus influenzae PittAA] gi|229811709|gb|EEP47407.1| probable poly polymerase [Haemophilus influenzae 6P18H1] Length = 452 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D++R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SSYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|15645264|ref|NP_207434.1| poly(A) polymerase (papS) [Helicobacter pylori 26695] gi|2313761|gb|AAD07702.1| poly(A) polymerase (papS) [Helicobacter pylori 26695] Length = 402 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 167/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EEGLKELFDIYEKSSHELYLVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSVHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G+A R ED LRILR RF A G K I + A Sbjct: 125 SPTKGLIDPFKGQNAIENQMIECVGEARLRFFEDALRILRSLRFSATLGFK-IAPNTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVIQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ C+ + Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LESLRYPKKTIVLFSKAKECHKSFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKHALKIKGLLKEIFDSNEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + + E L ++ Sbjct: 345 ALQSLGYQHQK-IGEILNACLDLVIANPKNNALEWLIEWVK 384 >gi|260599317|ref|YP_003211888.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Cronobacter turicensis z3032] gi|260218494|emb|CBA33665.1| Multifunctional CCA protein [Cronobacter turicensis z3032] Length = 415 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 83/346 (23%), Positives = 145/346 (41%), Gaps = 40/346 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + K P + T + Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPAQMLELGYQQVGKDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ D G+ ID G Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEQDLQRRDLTINAIAQDDCGEFIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL+ R ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 DDLKARLLRHVSPA---FNEDPLRVLRVARFAARYAHLGFRIAPETLALMREMAENGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G K +F +V ++ + A + Sbjct: 171 HLTPERVWKETESALTTRNPQIYFLMLRECGALKVLFPEVDKLF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ P + + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPAVDVRFAAL----CHDLGKGLTPPHLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +G + ++ L N +D ++ D+IH L P Sbjct: 272 GHGPAGVRLVGQVCQRLRVPN-DIRDLAKLVAEFHDLIHTFPVLKP 316 >gi|307132391|ref|YP_003884407.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Dickeya dadantii 3937] gi|306529920|gb|ADM99850.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Dickeya dadantii 3937] Length = 415 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ V + D + P+ +++ + + P + T + Sbjct: 2 KIYLVGGAVRDGLLGRPVTERDWVVVGATPEMLLQQGYQQVGRDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ D+ G++ID G Sbjct: 57 ---EYALARTERKSGNGYTGFTCQATPDITLEEDLQRRDLTINAIAQDEDGQLIDPYDGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + DA ED LR+LR RF A Y ++ L+ ++ L Sbjct: 114 RDLQNRLLRHVSDA---FSEDPLRVLRVARFAARYAHLGFLIAEETLNLMQAMTRNGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L ++P + + G +F ++ D+L V Q + Sbjct: 171 FLTPERVWKETEKALATQDPQVYFQVLRDCGALAVLFPEI-----DRLYGVPAPAQ-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA + S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHVMM---------SLAMAARLSPALDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + + L N C + + D++H + L P T Sbjct: 272 GHGPAGVPLVEALCQRLRVPNALRDLACLVAEYH-DVVHTVQMLQPKT 318 >gi|170783388|ref|YP_001711722.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169157958|emb|CAQ03168.1| putative RNA nucleotidyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 455 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 83/447 (18%), Positives = 161/447 (36%), Gaps = 57/447 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 + ++ + +VGG VRD+ + + D+D+ T PDR++ I ++ Sbjct: 2 LARAFHEAGHELALVGGPVRDAFLGRAATDLDLTTDARPDRILEIVKPVADAHWDIGRAF 61 Query: 78 GTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKV 135 GTI + + +ITT R+D R +V F + D +RRDFT+NAL Q + Sbjct: 62 GTIGARVKGEQVEITTYRTDQYDGVSRKPEVEFGSSLEEDLVRRDFTVNALAVRLPQVVL 121 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +D GG++DL + ++ +D LR++R RF + G + +D L A Sbjct: 122 VDPSGGIDDLLAQVLRTPVAPEVSFGDDPLRMMRAVRFASQLGFR-LDDAALAAIHDMAP 180 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---------- 245 + +S ER+ E++KLL P + + GG+ + ++ + L+ Sbjct: 181 RILDISVERVSDELSKLLRTPEPRAGLDLLVEGGLADHVLPELPAMKLEADEHHRHKDVY 240 Query: 246 ------LSQVIEAEQVFEW--KIDSLLRFIVLISWQDKKSILSM---------------- 281 L Q I+ E+ D +LR L+ K S + Sbjct: 241 QHSLQVLDQAIDHERSRHPGDAPDLVLRLAALLHDIGKPSTRRLEPGGVVTFHHHDVVGS 300 Query: 282 ------AKKFSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLK 330 + + + + + + +++ G ++ + Sbjct: 301 KMAKRRLRALRFDNDTIASVARLIELHLRFFGYTEGGWTDSAVRRYVRDAGPELERLHML 360 Query: 331 IFLALHYNNLTHQDT--------CFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKV 381 + N D + L++ L G+ +++ +PPG V Sbjct: 361 TRADVTTQNRRKADRLGFAYDDLEARIAELAEQEEMAAVRPDLDGEAIMRILDVPPGPVV 420 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLL 408 G + ++ E L+ Sbjct: 421 GRAYRFLLELRLDEGPLPEDEAERRLV 447 >gi|319775006|ref|YP_004137494.1| poly polymerase [Haemophilus influenzae F3047] gi|317449597|emb|CBY85802.1| probable poly polymerase [Haemophilus influenzae F3047] Length = 452 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + G+F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGRGVKTYRLLRQYGLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SSYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|167854734|ref|ZP_02477513.1| putative poly(A) polymerase [Haemophilus parasuis 29755] gi|167854148|gb|EDS25383.1| putative poly(A) polymerase [Haemophilus parasuis 29755] Length = 477 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 82/426 (19%), Positives = 157/426 (36%), Gaps = 55/426 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 S+ I I++ L K ++ +VGG +RD L+ +D DIAT P+ + +IF + R Sbjct: 51 SNTIAIINKLQKNGYEAYMVGGCIRDLLLGQKAKDFDIATNARPEEIQKIFGRQCRL--- 107 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRR 120 + I+ ++ +++ T R+D G + + D+ RR Sbjct: 108 -IGRRFRLAHIVFGREIYEVATFRADHHSNATEKMSKTSEAGMLLRDNVYGTLREDAERR 166 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DF++NA Y D +I D+ G++DL+ + IGD R ED +R+LR RF A Sbjct: 167 DFSVNAFYYDVSHNLIYDFFNGIDDLKAGKLALIGDPVTRYQEDPVRMLRAIRFMAKLDM 226 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D K LK + + R++ E KLL++ + G+F+++F + Sbjct: 227 F-LDKASDEPIRKMAVLLKNIPAARLFDESLKLLQSGYGHKTYELLRKYGLFEQLFPVLS 285 Query: 240 EISLD------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 + L+ E + + +++ F L+ + ++ I + + L Sbjct: 286 PFFTEYGDSNSERMISKALNSTDERIRD-DLRVNPAFLFAALLWYPLREKIDELKNQGGL 344 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 L + N+ + L Y + F Q T Sbjct: 345 NSHDAMMLAA------NEILAESVKAVALHRRYTTVIRDIWSLQFQFPKRTGKRPQQTLE 398 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS--QEDLH 405 ++ + + G D+V W F + ++ Sbjct: 399 HIKFRAGFD-LLVMRAEIEGGDLV---------------ELSAWWHEYQFSNEAQRAEML 442 Query: 406 HLLRKL 411 +++L Sbjct: 443 KTVKQL 448 >gi|327405856|ref|YP_004346694.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Fluviicola taffensis DSM 16823] gi|327321364|gb|AEA45856.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Fluviicola taffensis DSM 16823] Length = 474 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 79/449 (17%), Positives = 170/449 (37%), Gaps = 60/449 (13%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI-FSKTRYKVIPTSIS 76 + ++++ ++ ++GG VRD L+ +DIDI + + K R K + + Sbjct: 18 VSQIISEKGLEAYVIGGFVRDLLLERPSKDIDIVVVGNGMELAQAAGDKLRVKRVNLFKN 77 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ---- 132 +GT + + + R + +V D RRDFTINAL D + Sbjct: 78 FGTAQFNYKDLDVEFVGARKESYQRDSRKPIVEDGTLSDDQKRRDFTINALALDLRAESF 137 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G +ID GL DL ++ D + +D LR++R RF + I+ L + ++ Sbjct: 138 GNLIDPFNGLADLEKGILRTPLDPNTTYSDDPLRMMRAIRFATQL-DFQIEISSLKSILE 196 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------S 242 L+I+S ERI E+NK++ A+ P + + + + F ++ + Sbjct: 197 NSSRLEIISQERIVDELNKIILAEKPSRGFELLNSTKLLHQFFPEMIALHGTETRDGKSH 256 Query: 243 LDQLSQVIE-AEQVFEWKIDSLLRFIVLISW----------------------QDKKSIL 279 D +E + V + + LR+ ++ + + Sbjct: 257 KDNFYHTLEVLDNVAQHSDNLWLRWGAILHDIAKPPTKRFDSQVGWTFHGHEELGARMVP 316 Query: 280 SMAKKFSLPREIRYFLIS------FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 + + LP + + + + + ++ I++L + GD + + + Sbjct: 317 KIFTRLRLPLDAKMKYVQKLVRLHLRPISLVKSNVTDSAIRRLLFEAGDDI-DDLMTLCN 375 Query: 334 A---------LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGN 383 A + + L+ + + H + P++GD ++K + + P ++G Sbjct: 376 ADITSKNEFKVKKYKKNFELVIEKLKAVEEKDHVRNFQPPISGDLIMKTFNLKPCGEIGI 435 Query: 384 ILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 I K+ + + ++L+ Sbjct: 436 IKAKIKEAILEGEIPND----FEIAKELM 460 >gi|254233393|ref|ZP_04926719.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis C] gi|124603186|gb|EAY61461.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis C] Length = 514 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 84/365 (23%), Positives = 151/365 (41%), Gaps = 17/365 (4%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H + L + S+ + +VGG+VRD+L+ D+D T P+RV I V Sbjct: 21 HAALLRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAV 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GT+ + +ITT R+D R+ +V F + D +RRDFT NA+ Sbjct: 81 WDTGIEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAV 140 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 G+ +D +GGL LR + + +D LR+LR RF + G + Sbjct: 141 RVTATGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLG-FAVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A + L +S+ER+ +E++KLL ++P I M G+ + ++ + + Sbjct: 200 VRAAIEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRM-A 258 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS------LPREIRYFLISFF 299 + + + + V++ + ++LR + + +L A R +SF Sbjct: 259 IDEHHQHKDVYQHSL-TVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFH 317 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + + ++ L Y K MI + + LH + D + + + Sbjct: 318 HHEVVGAKMVRKRMRALKY---SKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDA 374 Query: 360 KPLFP 364 L P Sbjct: 375 GALLP 379 >gi|317009345|gb|ADU79925.1| poly(A) polymerase [Helicobacter pylori India7] Length = 402 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 166/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFDIYEKSSHELYLVGGCVRDRLMGITPKDYDLTSNALVNESKELLLKHDFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + K+VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKKLVFSAHLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+ I+ +G A R ED LRILR RF A G K I A Sbjct: 125 SPTKGLIDPFKGQNAIENQIIECVGGARLRFFEDALRILRALRFSATLGFK-IAPSTKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFAYKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVIQGKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCILFAKAKECHKAFLNIY 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKHALKIKSLLKEIFNANEPFKKEHLALKGS 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I + E L ++ Sbjct: 345 ALQSLGYKH-QQIGKILNACLDLVIAYPKNNALEGLIKWVK 384 >gi|261364589|ref|ZP_05977472.1| poly(A) polymerase [Neisseria mucosa ATCC 25996] gi|288567172|gb|EFC88732.1| poly(A) polymerase [Neisseria mucosa ATCC 25996] Length = 447 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 10/232 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + L + K+ IVGGAVRD L+ + +D D+AT P++V +IF ++R Sbjct: 41 AEKTVKRLQEEGFKAYIVGGAVRDLLLGVEPKDFDVATDATPEQVRKIFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMTGPETIEVTTFRGGGKVQQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +++D+ G+ND+ R++ IGDA R ED +RILR R G +++ Sbjct: 157 PICEEILDFHNGVNDIAARSLVMIGDAAERYREDPVRILRAVRLSGKLG-FSVEESTAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + LK R++ EI KLL + + + + + G+ +I + + Sbjct: 216 IPEYASRLKHEPVARLFDEIMKLLFSGHARECLKKLNSLGVSDDIHPLLTAL 267 >gi|260198967|ref|ZP_05766458.1| poly(A) polymerase pcnA [Mycobacterium tuberculosis T46] gi|289441350|ref|ZP_06431094.1| tRNA adenylyltransferase [Mycobacterium tuberculosis T46] gi|289414269|gb|EFD11509.1| tRNA adenylyltransferase [Mycobacterium tuberculosis T46] Length = 450 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 83/428 (19%), Positives = 158/428 (36%), Gaps = 55/428 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 H + L + S+ + +VGG+VRD+L+ D+D T P+RV I V Sbjct: 21 HAALLRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAV 80 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GT+ + +ITT R+D R+ +V F + D +RRDFT NA+ Sbjct: 81 WDTGIEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAV 140 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 G+ +D +GGL LR + + +D LR+LR RF + G + Sbjct: 141 RVTATGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLG-FAVAPR 199 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISL 243 A + L +S+ER+ +E++KLL ++P I M G+ + ++ +++ Sbjct: 200 VRAAIEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAI 259 Query: 244 DQLSQ-----------VIEAEQVFEWKIDSLLRFIVLISWQDKKS--------------- 277 D+ Q + +A + + D +LR+ L+ K + Sbjct: 260 DEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHH 319 Query: 278 -------ILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIA 327 + + +++ + + + Y+ ++ Sbjct: 320 EVVGAKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLP 379 Query: 328 KLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIP 376 +L + + + + + L G+ ++ IP Sbjct: 380 RLHKLVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIP 439 Query: 377 PGKKVGNI 384 G +VG Sbjct: 440 AGPQVGEA 447 >gi|260904997|ref|ZP_05913319.1| tRNA nucleotidyltransferase [Brevibacterium linens BL2] Length = 495 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 99/491 (20%), Positives = 165/491 (33%), Gaps = 78/491 (15%) Query: 1 MVSIVQHKWFHDS--DLINIL----SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTI 54 M H +D +L NIL + +VGG+VRD+L+ + D+D T Sbjct: 1 MDPKTAHARLYDKLDELENILGPLGKRFAAAGFELALVGGSVRDALLGRPMPDLDFTTDA 60 Query: 55 LPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDW 113 PD ++ + S +GTI I +ITT R++ + R V F D Sbjct: 61 RPDDILALISDWVDTHWDIGREFGTIGAIKSGAQIEITTYRAEAYDPESRKPTVQFGTDL 120 Query: 114 KADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 AD +RRDFTI A+ +D G DL I+ G A +D LR++R R Sbjct: 121 DADLVRRDFTIGAMAIRLPAMTFVDPFDGFTDLVEGVIRTPGTAADSFSDDPLRMMRAAR 180 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A G + ++ A + I+S+ERI E+ KL+ +P I + + Sbjct: 181 FTAQLG-LDPVAEVEAAMRDMADRIAIISAERIQVELFKLMTGIDPAAGIDLLVRTDVAD 239 Query: 233 EIFLDVQEISLD----------------QLSQVIEAEQVFEWK----------------I 260 + +V + L+ L Q +E E+ + K Sbjct: 240 HVLPEVAGLRLETDEHHRHKDVYQHSLTVLRQAVELEEQYAAKQREAGLSADDPNRLVVP 299 Query: 261 DSLLRFIVLISWQDKKSILSMA----------------------KKFSLPREIRYFLISF 298 D ++RF L+ K + K ++ + Sbjct: 300 DFVVRFAALMHDVGKPATRRFLPGGAVTFYHHDAVGAKLTAKRMKALRFDKDTTKAVGRL 359 Query: 299 FNCNFNQ---KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + Y+ ++++L I + + D+ Sbjct: 360 VELHLRFYGYGDAGWTDSAVRRYVTDAGPLLSRLHILTRADVTTRNKKKADRLAFAYDDL 419 Query: 356 IHW----------KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 H L G ++ I P VG H +E + L QE Sbjct: 420 EHRIEKLSEQEELAAIRPDLDGRQIMTILDIKPSPLVGKAYKHLLEERMEHG-PLGQERA 478 Query: 405 HHLLRKLIASS 415 +LR+ A + Sbjct: 479 EEVLRQWWAEN 489 >gi|69145904|gb|AAZ03499.1| poly(A) polymerase [Photobacterium angustum S14] Length = 480 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 29/263 (11%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K + + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F Sbjct: 44 ISRKDIS-ENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFR 102 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLR----------------------SDLITDG 102 R + I+ + ++ T R S +G Sbjct: 103 NCRL----IGRRFRLAHILFGRDIIEVATFRGHHSDAPIQATAPKDSKQKPQISSRSQEG 158 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161 + + D+ RRDFTINALY + V DY G++DL NR ++ +GD R Sbjct: 159 MLLRDNVYGTIEEDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYR 218 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF + ID + + S R++ E KLL++ L Sbjct: 219 EDPVRMLRAVRFAVKL-DMEIDPATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLET 277 Query: 222 IVHMYNGGIFKEIFLDVQEISLD 244 + +F+++F + + + Sbjct: 278 YRMLREYNLFQQLFPILADHFTE 300 >gi|212211856|ref|YP_002302792.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuG_Q212] gi|215919265|ref|NP_820806.2| multifunctional CCA protein [Coxiella burnetii RSA 493] gi|206584149|gb|AAO91320.2| tRNA nucleotidyltransferase [Coxiella burnetii RSA 493] gi|212010266|gb|ACJ17647.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuG_Q212] Length = 381 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 144/374 (38%), Gaps = 31/374 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P+ + K K P + T + Sbjct: 22 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTARGFKPVGKEFPVFLHPETHE----- 76 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y F + D RRD TINA+ +G++ID GG Sbjct: 77 ---EYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 133 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+N+ ++ + A ED +R+LR R + + +I D L+ + + L Sbjct: 134 EDLKNKVLRHVSVA---FQEDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 190 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ERIW E+N+ L + P + G +F +++ + + + V + Sbjct: 191 VPERIWQELNRALGNEKPTRFFTVLNQCGALAILFPEIKM----EGKGMAALQSVTDKTP 246 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-YL 319 L+RF L S + I +A ++ +P E I + L+ + L +L Sbjct: 247 SPLIRFATLQSDLPPEIIQKLAGRYRVPNEYADLAILVARFGSDYVNLNRMDETSLLNFL 306 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP--P 377 + + + + +L T + + +II K + D+ Sbjct: 307 LKTDALRRQERFDQFIFTCDLISSTTSSQPKKIKEIIKAVKSV------DIKPLQEKQLK 360 Query: 378 GKKVGNILVHCKQE 391 G+ L + E Sbjct: 361 GEAFAKALEKLRLE 374 >gi|146283614|ref|YP_001173767.1| poly(A) polymerase [Pseudomonas stutzeri A1501] gi|145571819|gb|ABP80925.1| poly(A) polymerase [Pseudomonas stutzeri A1501] Length = 466 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 20/240 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L + ++ +VGG VRD L+ L+ +D D+AT+ P++V F R Sbjct: 42 SRHAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQVRAEFRNARV--- 98 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADS 117 + + + ++ ++ T R++ GR + + D+ Sbjct: 99 -IGRRFKLVHVHFGREIIEVATFRANHPEEDDEDASQLASRNESGRILRDNVYGTLEDDA 157 Query: 118 LRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTINALY D + ++D+ G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 158 QRRDFTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAK 217 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ + L + S R++ E KL + +F +F Sbjct: 218 L-DFEIERHSAEPIADLAELLDGIPSARLFDETLKLFLGGKAERTFELLLEYDLFAPLFP 276 >gi|315023502|gb|EFT36508.1| tRNA nucleotidyltransferase [Riemerella anatipestifer RA-YM] gi|325335276|gb|ADZ11550.1| tRNA nucleotidyltransferase/poly(A) polymerase [Riemerella anatipestifer RA-GD] Length = 476 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 166/449 (36%), Gaps = 58/449 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYK--VIP 72 I + + + IVGG VRD LM DID T + + +K + Sbjct: 17 KTISKVAEERGQTAYIVGGYVRDLLMKRQVPTDIDFVTEQSGIELAQAVAKELDSNLKVS 76 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-- 130 +YGT I + + R + ++ V + D RRDFTINA+ Sbjct: 77 VFKTYGTAMIKWKGLELEFVGARKESYSEDSRKPAVEQGSLEDDQKRRDFTINAMAISLG 136 Query: 131 --QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+++D GG+ DL ++ +K + +D LR++R RF + K ++ + L Sbjct: 137 KEDFGRLVDPFGGVQDLESKILKTPLEPLQTYSDDPLRMMRAIRFASTLNFK-VEQNSLD 195 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241 A + +KI+S ERI E NK++ ++ P + + + G+ ++I ++ + Sbjct: 196 AIKQEADRIKIVSMERIMVEFNKIMLSEKPSIGLKLLDDTGLLEKIIPELTALKGIEEIE 255 Query: 242 ---SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS----------------- 280 D +E D L LR+ L+ K Sbjct: 256 GQTHKDNFYHTLEVVDNISKHTDKLWLRWSALLHDIGKAPTKKFVDGTGWTFHGHEFLGS 315 Query: 281 -----MAKKFSLP-----REIRYFL-ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 + ++ LP + ++ + +S S +++L + G+ + Sbjct: 316 KMAKPLFQRLKLPLGADLKYVQKMVKLSSRPIALVTDDTSDAALRRLLFDAGED-LEDLF 374 Query: 330 KIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVKYG-IPPGK 379 + A T + F + + + P++G++++ + PG+ Sbjct: 375 TLCKADITTKNTKKQERFRKNFEYVAQKIKEVEEKDQIRNFQPPISGEEIMALFQLKPGR 434 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++G + K+ + + E+ + Sbjct: 435 EIGILKEKVKEAILEGEISNTPEEAKDFV 463 >gi|161830664|ref|YP_001597649.1| multifunctional CCA protein [Coxiella burnetii RSA 331] gi|73619765|sp|Q820V9|CCA_COXBU RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|189081872|sp|A9NAS1|CCA_COXBR RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|161762531|gb|ABX78173.1| multifunctional CCA protein [Coxiella burnetii RSA 331] Length = 376 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 144/374 (38%), Gaps = 31/374 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P+ + K K P + T + Sbjct: 17 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTARGFKPVGKEFPVFLHPETHE----- 71 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y F + D RRD TINA+ +G++ID GG Sbjct: 72 ---EYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 128 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+N+ ++ + A ED +R+LR R + + +I D L+ + + L Sbjct: 129 EDLKNKVLRHVSVA---FQEDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 185 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ERIW E+N+ L + P + G +F +++ + + + V + Sbjct: 186 VPERIWQELNRALGNEKPTRFFTVLNQCGALAILFPEIKM----EGKGMAALQSVTDKTP 241 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-YL 319 L+RF L S + I +A ++ +P E I + L+ + L +L Sbjct: 242 SPLIRFATLQSDLPPEIIQKLAGRYRVPNEYADLAILVARFGSDYVNLNRMDETSLLNFL 301 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP--P 377 + + + + +L T + + +II K + D+ Sbjct: 302 LKTDALRRQERFDQFIFTCDLISSTTSSQPKKIKEIIKAVKSV------DIKPLQEKQLK 355 Query: 378 GKKVGNILVHCKQE 391 G+ L + E Sbjct: 356 GEAFAKALEKLRLE 369 >gi|253583935|ref|ZP_04861133.1| poly(A) polymerase [Fusobacterium varium ATCC 27725] gi|251834507|gb|EES63070.1| poly(A) polymerase [Fusobacterium varium ATCC 27725] Length = 448 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 101/437 (23%), Positives = 177/437 (40%), Gaps = 55/437 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 IL + K + IVGG VRDSL+ L +D D T + ++++ IF + K ++ Sbjct: 16 ILETIQKYG-EGYIVGGYVRDSLLGLKPKDCDFVTNLSYEKLLEIFKEFHPK--EIGKAF 72 Query: 78 GTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 G I+I + +++I R D+ D R +V FT + D RRDFTINA+ D G+ Sbjct: 73 GIIQIKYKGIHYEIAKYRKDIGVPEDRREQEVEFTDNIMEDLKRRDFTINAVAFD--GEN 130 Query: 136 IDYV-GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 YV + D+ N+ ++F+G A RI ED LR++RF RF N + + + Sbjct: 131 YRYVEHAVEDIMNKNLRFVGGAPERIKEDPLRVMRFIRFLVTKNLNN--KNDIKQILPYI 188 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------------VQEIS 242 +K LS ER+ E +K++ A + +AI + GI + + + ++ Sbjct: 189 PLVKKLSMERMRDEFSKIITADDAHSAIELLEKTGILEYLIPEWTKTKKFNQRNPHHNLT 248 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKS---------------------ILSM 281 LD+ + + V + D LR L+ K + Sbjct: 249 LDEHIKKV----VASIEGDIELRLAALLHDIGKPQTYTLKNGIGHFYGHEQESAVLAEKI 304 Query: 282 AKKFSLPREI-RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 + +I + + N N K + KKL G + M K+ A + Sbjct: 305 LLRMKYANKIVKNVTLLIANHLNNSKNSNKKYCKKLIEKIGYENMPKLFKLMEADRIAHK 364 Query: 341 THQDTCFILQVL-------SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 D + ++ ++ + G+D++ GI GK +G L + + + Sbjct: 365 PPFDFTALDKLKIAYYEICNNNEPISIKDLVVNGNDMIALGITKGKDIGETLKYLLGKVL 424 Query: 394 NSSFQLSQEDLHHLLRK 410 +E L + + Sbjct: 425 EDPANNDREILLNFAEQ 441 >gi|253991026|ref|YP_003042382.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782476|emb|CAQ85640.1| multifunctional cca protein [Photorhabdus asymbiotica] Length = 408 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+NL V++ D + P+ ++ + K P + T + Sbjct: 2 RIYLVGGAVRDRLLNLPVKERDWVVVGGTPEELLSQGYQQVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ G+ +D G+ Sbjct: 57 ---EYALARTERKSSLGYTGFTCYAAPNVTLEDDLLRRDLTINAIAQTPDGEFVDPYHGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL NR ++ + DA ED LR+LR RF A + ++ L++++ L Sbjct: 114 SDLNNRILRHVSDA---FSEDPLRVLRVARFAARFAHLGFTIAPETQALMSNMATNGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 IL+ ER+W E K L +P + + G +F ++ + + A + + Sbjct: 171 ILTPERVWKETEKALSTYSPQVFFQILRDCGALAVLFPEINNLF------GVPAPEKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L +A + + + R+ + C+ K L+ PE Y Sbjct: 225 EIDTGIHALM---------VLKVAAELTNEVDSRFAAL----CHDLGKGLTPPEQWPHHY 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N + +D + D++H L P T Sbjct: 272 GHGPAGVKLVDQLCQRLRVPN-SARDLAKLAANYHDLVHTVDQLRPKT 318 >gi|294788727|ref|ZP_06753968.1| poly(A) polymerase [Simonsiella muelleri ATCC 29453] gi|294483209|gb|EFG30895.1| poly(A) polymerase [Simonsiella muelleri ATCC 29453] Length = 438 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 9/231 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++ L K ++ +VGGAVRDSL+ ++ +D D+AT P++V ++F ++R Sbjct: 36 AEDVIKKLVKEGFEAYLVGGAVRDSLLGVAPKDFDVATNARPEQVEKLFRRSRI----IG 91 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT---DGRYAKVVFTRDWKADSLRRDFTINALYAD- 130 + + ++ K+ +++T RS +GR K + D++RRDFT NALY D Sbjct: 92 RRFPIVHVMSGKETVEVSTFRSGKTRQNANGRIVKDNGYGTLEQDAMRRDFTCNALYYDV 151 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + K+ID+ G+ND+R++ + IG+ R ED +RILR R ID + Sbjct: 152 IRHKIIDFHDGMNDIRHKKLVMIGEPAERYQEDPVRILRAIRLSGKLN-FQIDENTAEPI 210 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L+ R++ E+ K+L + + + + N I I + + Sbjct: 211 ASHAHLLQNEPVSRLFDELMKILFSGHAQGCLQQLQNLNINAPIHPLLTAL 261 >gi|218667450|ref|YP_002426193.1| polyA polymerase [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519663|gb|ACK80249.1| polyA polymerase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 477 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 15/242 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F + + Sbjct: 34 ALQVLNGLHRAGFQAYLVGGSVRDLLLGREPKDFDVATDAHPEQVRKLFRRNARLI---G 90 Query: 75 ISYGTIKIICRKKYFDITTLR----------SDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + + + + ++ T R S+ GR + D+ RRDFT Sbjct: 91 RRFILVHVQFGNEIIEVATFRGSANGKEDESSEHSETGRILADNVYGSLEEDARRRDFTA 150 Query: 125 NALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY + + ++D+ G+ DL+ ++ IGD R ED +R+LR RF A G +D Sbjct: 151 NALYYNIADRSILDFSTGMEDLQAGRLRVIGDPEQRYREDPVRMLRAVRFAAKLG-FTLD 209 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + +K L+ + S R++ E KL N + H+ G+F +F V + Sbjct: 210 AAAQAPIAACRKLLQEVPSARLFEETLKLFLTGNAQTSFEHLRQMGLFAALFPQVDALLD 269 Query: 244 DQ 245 D Sbjct: 270 DA 271 >gi|209363657|ref|YP_001423491.2| tRNA nucleotidyltransferase [Coxiella burnetii Dugway 5J108-111] gi|212217801|ref|YP_002304588.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuK_Q154] gi|207081590|gb|ABS78203.2| tRNA nucleotidyltransferase [Coxiella burnetii Dugway 5J108-111] gi|212012063|gb|ACJ19443.1| tRNA nucleotidyltransferase [Coxiella burnetii CbuK_Q154] Length = 381 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 144/374 (38%), Gaps = 31/374 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P+ + K K P + T + Sbjct: 22 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTARGFKPVGKEFPVFLHPETHE----- 76 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y F + D RRD TINA+ +G++ID GG Sbjct: 77 ---EYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 133 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+N+ ++ + A ED +R+LR R + + +I D L+ + + L Sbjct: 134 EDLKNKVLRHVSVA---FQEDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 190 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+N+ L + P + G +F +++ + + + V + Sbjct: 191 VPERVWQELNRALGNEKPTRFFTVLNQCGALAILFPEIKM----EGKGMAALQSVTDKTP 246 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-YL 319 L+RF L S + I +A ++ +P E I + L+ + L +L Sbjct: 247 SPLIRFATLQSDLPPEIIQKLAGRYRVPNEYADLAILVARFGSDYVNLNRMDETSLLNFL 306 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP--P 377 + + + + +L T + + +II K + D+ Sbjct: 307 LKTDALRRQERFDQFIFTCDLISSTTSSQPKKIKEIIKAVKSV------DIKPLQEKQLK 360 Query: 378 GKKVGNILVHCKQE 391 G+ L + E Sbjct: 361 GEAFAKALEKLRLE 374 >gi|300718448|ref|YP_003743251.1| multifunctional tRNA nucleotidyl transferase/2\'3\'-cyclic phosphodiesterase/2\'nucleotidase/phosphatase [Erwinia billingiae Eb661] gi|299064284|emb|CAX61404.1| multifunctional tRNA nucleotidyl transferase/2\'3\'-cyclic phosphodiesterase/2\'nucleotidase/phosphatase [Erwinia billingiae Eb661] Length = 408 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 151/362 (41%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+NL V+D D + P+ ++ + + P + T Sbjct: 2 KTYLVGGAVRDALLNLPVKDKDWVVVGASPEEMLSQGYEQVGRDFPVFLHPET------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y V + D RRD TINA+ D+QG++ D GG Sbjct: 55 -HQEYALARTERKSGSGYTGFVCYSAPDVTLEQDLQRRDLTINAIAQDEQGRLYDPYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A + N ++ L+ + L Sbjct: 114 ADLDQRLLRHVSAA---FNEDPLRVLRVARFAARFAHLNFVVAEETQALMRWMAESGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K LE +NP + + G +F ++ + + A + Sbjct: 171 TLTPERVWKETEKALETRNPQVYFQVLRDCGALAVLFPELDNLY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L++A + S +R+ + + K L+ PE + Sbjct: 225 EIDTGIHTLM---------TLAIAAQLSPDIAVRFATLF----HDVGKALTPPEKWPSHH 271 Query: 319 LYGD------KVMIAKLKI--------FLALHYNNLTH----QDTCFILQVLSDIIHWKK 360 +G + +L++ L +++L H Q ++ + I W+K Sbjct: 272 GHGPAGVPLVAALCQRLRVPNAIRDLALLVTEFHDLVHTVERQSAETLVALFDRIDAWRK 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|34497087|ref|NP_901302.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC 12472] gi|34102944|gb|AAQ59308.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC 12472] Length = 450 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 13/250 (5%) Query: 4 IVQHKWFHDS---DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 + QH D + + S L + + +VGGAVRD ++ +S +D D+AT P++V Sbjct: 26 LPQHGIRRDQLSHAALRVTSRLQEAGFSAFVVGGAVRDLMLGVSPKDFDVATNATPEQVH 85 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKAD 116 +F ++R + + ++ + ++TT R + D GR + D Sbjct: 86 HLFRRSRI----IGRRFRIVHVMMGPETIEVTTFRGGSVDDTNETGRIMADNSFGSQEED 141 Query: 117 SLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFT+NAL+ D + VIDY G+ DL + + IG R ED +R+LR R A Sbjct: 142 AHRRDFTVNALFYDPSDETVIDYHHGVKDLHAKKLVMIGQPARRYQEDPVRMLRAVRLAA 201 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G ID D LK R++ E+ KLL + + + + G+ + +F Sbjct: 202 KLG-FEIDEDTKKPIRAHAHLLKKEPPARLFDELLKLLMSGHAYACLKKLREEGLARGVF 260 Query: 236 LDVQEISLDQ 245 + + D+ Sbjct: 261 PLLDAVIDDK 270 >gi|145297078|ref|YP_001139899.1| hypothetical protein cgR_2974 [Corynebacterium glutamicum R] gi|140846998|dbj|BAF55997.1| hypothetical protein [Corynebacterium glutamicum R] Length = 470 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 86/449 (19%), Positives = 162/449 (36%), Gaps = 56/449 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L+ + + + +VGG+VRD+ + D+D T+ P+ I V T Sbjct: 15 LVPLAAAFSSKGHSLYLVGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTG 74 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY----A 129 I++GT+ + +ITT RSDL + R +V F + D +RRDF +NA+ A Sbjct: 75 IAFGTLSAEKHGQQIEITTFRSDLYDGNSRNPEVTFGDTLEGDLIRRDFKVNAMAAEIQA 134 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D + D VGGL DL T+ +D LR+LR RF + + + A Sbjct: 135 DGELTFHDPVGGLEDLLTHTLDTPATPEQSFNDDPLRMLRAARFVSQLN-FTLAPRVITA 193 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ---- 245 + + + ++ ER+ E++K++ KNP I M GI + ++ ++ + + Q Sbjct: 194 MTEMAQQITRITVERMQVELDKMILGKNPEAGIDLMVESGIAQIVYPEIPAMQMTQDEHM 253 Query: 246 ---------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA-------------- 282 L + +A E D +LR+ L+ K Sbjct: 254 QHKDVYAHSLQVMRQAIDQEEDGPDLVLRWAALLHDCGKPDTRDFNEEGRVSFHQHEVVG 313 Query: 283 --------KKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAKLKI 331 +K +++ + + S + Y ++ +L Sbjct: 314 AKLVRRRMRKLKYSKQMVGDVGQLVFLHMRFHGFSEGQWTDSAVRRYAADAGELLPRLHK 373 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKK 380 + + + + + L G+++++ I G + Sbjct: 374 LVRADCTTRNKRKAARLQATYDHLEERIAEIAAKEDLARVRPDLDGNEIMEILNIQAGPE 433 Query: 381 VGNILVHCKQEWINSSFQLSQEDLHHLLR 409 VG K+ + L +E L+ Sbjct: 434 VGKAWAFLKELRLERG-PLDREVAIAELK 461 >gi|153206203|ref|ZP_01945466.1| multifunctional CCA protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918249|ref|ZP_02218335.1| multifunctional CCA protein [Coxiella burnetii RSA 334] gi|189081871|sp|A9KEZ9|CCA_COXBN RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|120577333|gb|EAX33957.1| multifunctional CCA protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918109|gb|EDR36713.1| multifunctional CCA protein [Coxiella burnetii RSA 334] Length = 376 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 144/374 (38%), Gaps = 31/374 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V++ D + P+ + K K P + T + Sbjct: 17 KVYLVGGAVRDQLLGLPVKEKDWVVVGATPEEMTARGFKPVGKEFPVFLHPETHE----- 71 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y F + D RRD TINA+ +G++ID GG Sbjct: 72 ---EYALARTERKVAKGYKGFTFYAAPDVSLEEDLKRRDLTINAIAETPEGQLIDPYGGQ 128 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL+N+ ++ + A ED +R+LR R + + +I D L+ + + L Sbjct: 129 EDLKNKVLRHVSVA---FQEDPVRVLRLARLATKFPDFSIHPDTLELMKKMVCAGEIDAL 185 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+N+ L + P + G +F +++ + + + V + Sbjct: 186 VPERVWQELNRALGNEKPTRFFTVLNQCGALAILFPEIKM----EGKGMAALQSVTDKTP 241 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-YL 319 L+RF L S + I +A ++ +P E I + L+ + L +L Sbjct: 242 SPLIRFATLQSDLPPEIIQKLAGRYRVPNEYADLAILVARFGSDYVNLNRMDETSLLNFL 301 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP--P 377 + + + + +L T + + +II K + D+ Sbjct: 302 LKTDALRRQERFDQFIFTCDLISSTTSSQPKKIKEIIKAVKSV------DIKPLQEKQLK 355 Query: 378 GKKVGNILVHCKQE 391 G+ L + E Sbjct: 356 GEAFAKALEKLRLE 369 >gi|297539331|ref|YP_003675100.1| poly(A) polymerase [Methylotenera sp. 301] gi|297258678|gb|ADI30523.1| poly(A) polymerase [Methylotenera sp. 301] Length = 486 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 19/244 (7%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + L+K ++ IVGGAVRD L+N + +D D+AT P+ V RIF ++R Sbjct: 68 LLSNAALKTTEGLHKAGFEAYIVGGAVRDLLLNRTPKDFDVATDATPEEVNRIFRRSRI- 126 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLIT-------------DGRYAKVVFTRDWKAD 116 + + ++ + +++T R + GR + D Sbjct: 127 ---IGKRFRLVHVLFGDETIEVSTFRGSHLETEGNPKGDSKTTDSGRIIRDNVFGSIVDD 183 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 ++RRDFT NALY + +V+D+ G D++ ++ IG R ED +R+LR R A Sbjct: 184 AVRRDFTANALYYNPASQEVLDFHHGYTDIKAGVLRMIGKPETRYAEDPVRMLRAVRLSA 243 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 G K ID K L+ + R++ E+ KL + + + ++ + + + Sbjct: 244 KLGLK-IDQATQAPIAKMADLLQDVPPSRLFDEMLKLFLSGHAMESVSALREQHLHHGLL 302 Query: 236 LDVQ 239 + Sbjct: 303 PMLD 306 >gi|330504808|ref|YP_004381677.1| poly(A) polymerase [Pseudomonas mendocina NK-01] gi|328919094|gb|AEB59925.1| poly(A) polymerase [Pseudomonas mendocina NK-01] Length = 462 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 20/240 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I+++ L K ++ +VGG VRD L+++ +D D+AT+ P++V F R Sbjct: 39 SRHAISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATSATPEQVRAEFRNARV--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADS 117 + + + ++ ++ T R++ GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRANHPQGEEEENSNQAARHESGRILRDNVYGTLEDDA 154 Query: 118 LRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTINALY D + ++DY G++D+RN ++ IGD R LED +R+LR RF A Sbjct: 155 QRRDFTINALYYDPTQEHILDYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAK 214 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ + L+ + S R++ E+ KL A + +F ++F Sbjct: 215 L-DFEIEKHSAAPIRRLAPMLRDIPSARLFDEVLKLFLAGYAEYTFDLLIEHDLFAQLFP 273 >gi|242238281|ref|YP_002986462.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya dadantii Ech703] gi|242130338|gb|ACS84640.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya dadantii Ech703] Length = 412 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 144/346 (41%), Gaps = 40/346 (11%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+ V + D + P+ +++ + + P + T + Sbjct: 4 YLVGGAVRDNLLERPVTERDWVVVGATPEAMLQQGYQQVGRDFPVFLHPETKE------- 56 Query: 89 FDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + Y V + D LRRD TINA+ D G++ID GG D Sbjct: 57 -EYALARTERKSGHGYTGFVCQATPDITLEEDLLRRDLTINAIAQDDAGRLIDPYGGQQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L++R ++ + DA ED LR+LR RF A Y ++ L+ + L L Sbjct: 116 LQDRILRHVSDA---FSEDPLRVLRVARFAARYAHLGFHIAEETLTLMQMMTRAGDLDYL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E K L P + + G +F ++ + + A + +I Sbjct: 173 TPERVWKETEKALGTDAPQVYFQVLRDCGALAVLFPEIDRLY------GVPAPARWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ LSMA + S +IR+ ++ C+ K L+ + + + Sbjct: 227 DTGIHVMM---------SLSMAARLSPDIDIRFAVL----CHDVGKGLTPQALWPRHHGH 273 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 G + + L N +D ++ D++H + L P T Sbjct: 274 GPAGVPLVQALCQRLRVPN-APRDLACLVTEYHDLVHTVQILRPQT 318 >gi|327482009|gb|AEA85319.1| poly(A) polymerase [Pseudomonas stutzeri DSM 4166] Length = 463 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 20/240 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L + ++ +VGG VRD L+ L+ +D D+AT+ P++V F R Sbjct: 39 SRHAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQVRAEFRNARV--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADS 117 + + + ++ ++ T R++ GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRANHPEEDDEDASQLALRNESGRILRDNVYGTLEDDA 154 Query: 118 LRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTINALY D + ++D+ G++D+RNR I+ IGD R ED +R+LR RF A Sbjct: 155 QRRDFTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAK 214 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I+ + L + S R++ E KL + +F +F Sbjct: 215 L-DFEIERHSAEPIADLAELLDGIPSARLFDETLKLFLGGKAERTFELLLEYDLFAPLFP 273 >gi|110638922|ref|YP_679131.1| tRNA adenylyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110281603|gb|ABG59789.1| tRNA adenylyltransferase (tRNA nucleotidyl transferase) [Cytophaga hutchinsonii ATCC 33406] Length = 479 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 86/448 (19%), Positives = 168/448 (37%), Gaps = 55/448 (12%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK- 69 ++ + + + ++ ++ IVGG VRD +M+ +DID + + + + Sbjct: 13 NNVHIRAVAAAADELGLETYIVGGYVRDLIMDRDNKDIDFVCLGSGIELAQKVAANMGEH 72 Query: 70 -VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + ++GT I + R + V + + D LRRDFTINAL Sbjct: 73 VQVHIFKTFGTAMINAGDTELEFVGARKESYDFNSRKPTVESGTLEDDQLRRDFTINALA 132 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G+++D G++D++ + IK DA +D LR++R RF +I++ Sbjct: 133 ICLNKARFGELVDPFDGVSDIKRKIIKTPQDALLTFSDDPLRMIRAVRFATQLN-FDIEA 191 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241 A K L I+S ERI E+NK++ A P +Y G+ K+IF + + Sbjct: 192 ATFQAIATNKDRLSIVSMERISQELNKIISAPVPSYGFKLLYISGVLKDIFPEFVALHGV 251 Query: 242 -------SLDQLSQVIE-AEQVFEWKIDSLLRFIVLIS---------------------- 271 D ++ + V + D LR+ ++ Sbjct: 252 ESIDNKSHKDNFYHTLQVLDNVAKVSDDLWLRWAAILHDIAKPLTKRFVERIGWTFHGHE 311 Query: 272 WQDKKSILSMAKKFSLP-REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330 + + + ++ +K LP E + + +L E+ Sbjct: 312 DKGARMVPAIFRKLRLPLNEKMDMVAKLVRLHLRPISLVKDEVTDSAVRRLMFEAGEHFS 371 Query: 331 IFLALHYNNLTHQDTCFILQVL-------------SDIIHWKKPLFPLTGDDVVK-YGIP 376 + L ++T ++ + + L + + ++G+D++K + I Sbjct: 372 DLMILCRADVTSKNNNKVKRYLENFDKVERKVIEVEEKDQQRNFQPVVSGEDIMKTFDIK 431 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDL 404 PGK +G+I + + Q E L Sbjct: 432 PGKVIGDIKADLIEAILEGDVQNEYEIL 459 >gi|148262375|ref|YP_001229081.1| poly(A) polymerase [Geobacter uraniireducens Rf4] gi|146395875|gb|ABQ24508.1| poly(A) polymerase [Geobacter uraniireducens Rf4] Length = 454 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 103/279 (36%), Gaps = 37/279 (13%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + +W + + +L L + +VGG VRD L+ +D DI T P ++ R+F Sbjct: 16 ISRRWLS-PNAVKVLYRLKDNGFTAYLVGGGVRDLLLGREPKDFDIVTDATPGQIKRMFR 74 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-------------------------- 98 R + + + ++ T RS Sbjct: 75 NCRL----IGRRFRLAHLHFHDEIIEVATFRSASQDEPCAEEQGPAPGEITEPGARMRPP 130 Query: 99 ----ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFI 153 DG + + D++RRDFT+NAL + +IDYVGG+ DL ++ I Sbjct: 131 RLLKSEDGMVLRDNIFGTPEEDAIRRDFTVNALCYNIDDFSIIDYVGGMEDLNRGVVRTI 190 Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 GD R ED +R++R RF A G ++ + + + R++ E+ KL Sbjct: 191 GDPLVRFTEDPVRMIRAVRFAAMLG-FEVEKATWQTILDLSATITKAAPPRLYEEVLKLF 249 Query: 214 EAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + G+F +F + + V Sbjct: 250 LMGAGEKTYQLLRQSGLFAALFPHFNDWLARESDGVPHT 288 >gi|157148617|ref|YP_001455936.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Citrobacter koseri ATCC BAA-895] gi|166233851|sp|A8APT7|CCA_CITK8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157085822|gb|ABV15500.1| hypothetical protein CKO_04444 [Citrobacter koseri ATCC BAA-895] Length = 413 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 142/348 (40%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINAL D G ++D G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEEDLQRRDLTINALAQDDDGHIVDPYQGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLDNRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETLALMRDMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F +V + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEVDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPNVDVRFATL----CHDLGKGLTPKALWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNEI-RDLAKLVAEFHDLIHTFPILQPKT 318 >gi|114319723|ref|YP_741406.1| poly(A) polymerase [Alkalilimnicola ehrlichii MLHE-1] gi|114226117|gb|ABI55916.1| poly(A) polymerase [Alkalilimnicola ehrlichii MLHE-1] Length = 479 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 79/416 (18%), Positives = 135/416 (32%), Gaps = 67/416 (16%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L + +VGG VRD + +D D+AT P+ V +F R Sbjct: 53 SENALKVLYRLKNAGYGAYLVGGGVRDLSLGHEPKDFDVATDARPEEVRELFRNCRL--- 109 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------------------------ 101 + + ++ ++ T R+ + Sbjct: 110 -IGRRFRLAHVQFGREIIEVATFRALHDPESQDDDEADGDFDDDDVEVRDRAVGEVAFEN 168 Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRI 160 GR + + D+LRRDFTINALY + V+D+ GGL DL I+ +GD R Sbjct: 169 GRIVRDNVYGTLEEDALRRDFTINALYYNIADFSVVDHAGGLKDLDQGVIRLMGDPETRY 228 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED +R+LR RF A G + I D + L + R++ E+ KL Sbjct: 229 REDPVRMLRAVRFAAKLGFR-IHPDTAEPLPRMAHLLAEVPPARLFDEVLKLFMGGLAAE 287 Query: 221 AIVHMYNGGIFKEIFLDVQ-EISLDQLSQVIEA---------EQVFEWKIDSLLRFIVLI 270 + G+F +F + EI DQ V+ E++ K + + Sbjct: 288 TFEMLRQHGLFAPLFPMTEREIEADQHGVVLSFIAQALKNTDERIENGKPVTPAFLFAAL 347 Query: 271 SWQD--------------------KKSILSMAKKFSLPREI-RYFLISFFNCNFNQKTLS 309 W +++ + ++ I + F I Q Sbjct: 348 LWPAVVARSLALQAEEDVPPVPALQQAAAEIQRRQRQSVAIPKRFGIPMGEIWTLQPRFD 407 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 K+ G A L + ++ ++ L Sbjct: 408 QRTGKRPLRFMGHPRFRAAYDFLLLRATIGEVPEALAEWWTQFQELHPEQRAQVVL 463 >gi|283836415|ref|ZP_06356156.1| multifunctional CCA protein [Citrobacter youngae ATCC 29220] gi|291067789|gb|EFE05898.1| multifunctional CCA protein [Citrobacter youngae ATCC 29220] Length = 413 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALIGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPRTRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAMARDDDGEIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL+NR ++ + A ED LR+LR RF A Y ++ L+ + A L+ Sbjct: 114 SDLQNRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIADETMTLMRDMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+SER+W E L +NP + + G + +F +V + + A + Sbjct: 171 HLTSERVWKETENALTTRNPQVFFQVLRDCGALRVLFPEVDALF------GVPAPAQWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPEVDVRFATL----CHDLGKALTPKALWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DIRDLAKLVAEFHDLIHTFPILQPKT 318 >gi|212711175|ref|ZP_03319303.1| hypothetical protein PROVALCAL_02247 [Providencia alcalifaciens DSM 30120] gi|212686343|gb|EEB45871.1| hypothetical protein PROVALCAL_02247 [Providencia alcalifaciens DSM 30120] Length = 413 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 84/365 (23%), Positives = 153/365 (41%), Gaps = 57/365 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L + D D + P+ ++ + K P + T + Sbjct: 2 KVYLVGGAVRDKLLGLPISDRDYVVVGTTPEAMLAKGFQQVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D LRRD TINA+ G++ID G+ Sbjct: 57 ---EYALARTERKIGSGYTGFSCYSAPDVTIEDDLLRRDLTINAIAQSDTGELIDPHHGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLK 198 DL+NR ++ + DA LED LR+LR RF A Y G + ++ L+ S+ L Sbjct: 114 RDLKNRVLRHVSDA---FLEDPLRVLRVARFAARYYAQGFRIAPETMFLMQSMSESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W+E +K L + +P + G +F ++ D L V E+ + Sbjct: 171 HLTPERVWTETHKALMSNSPQIYFEVLRECGALAILFPEI-----DNLFGVPAPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 ++D+ + ++ ++ + S ++R+ + C+ K L+ + Sbjct: 225 EVDTGIHILM---------VMRVVATLSKDIDVRFAAL----CHDLGKGLTPKAVWPSHP 271 Query: 319 LYGDKV------MIAKLKI--------FLALHYNNLTH----QDTCFILQVLSDIIHWKK 360 +G+ + + KI LA Y+++ H + C ++ + + W+K Sbjct: 272 QHGEAGIPLIIDLCERYKIPSSTKDLACLAAKYHDMIHVINKLNACDLVGMFDGLDSWRK 331 Query: 361 PLFPL 365 P L Sbjct: 332 PERIL 336 >gi|313207278|ref|YP_004046455.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Riemerella anatipestifer DSM 15868] gi|312446594|gb|ADQ82949.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Riemerella anatipestifer DSM 15868] Length = 476 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 166/449 (36%), Gaps = 58/449 (12%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYK--VIP 72 I + + + IVGG VRD LM DID T + + ++ + Sbjct: 17 KTISKVAEERGQTAYIVGGYVRDLLMKRQVPTDIDFVTEQSGIELAQAVARELDSNLKVS 76 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-- 130 +YGT I + + R + ++ V + D RRDFTINA+ Sbjct: 77 VFKTYGTAMIKWKGLELEFVGARKESYSEDSRKPAVEQGSLEDDQKRRDFTINAMAISLG 136 Query: 131 --QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G+++D GG+ DL ++ +K + +D LR++R RF + K ++ + L Sbjct: 137 KEDFGRLVDPFGGVQDLESKILKTPLEPLQTYSDDPLRMMRAIRFASTLNFK-VEQNSLD 195 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241 A + +KI+S ERI E NK++ ++ P + + + G+ ++I ++ + Sbjct: 196 AIKQEADRIKIVSMERIMVEFNKIMLSEKPSIGLKLLDDTGLLEKIIPELTALKGIEEIE 255 Query: 242 ---SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILS----------------- 280 D +E D L LR+ L+ K Sbjct: 256 GQTHKDNFYHTLEVVDNISKHTDKLWLRWSALLHDIGKAPTKKFVDGIGWTFHGHEFLGS 315 Query: 281 -----MAKKFSLP-----REIRYFL-ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 + ++ LP + ++ + +S S +++L + G+ + Sbjct: 316 KMAKPLFQRLKLPLGADLKYVQKMVKLSSRPIALVTDDTSDAALRRLLFDAGED-LEDLF 374 Query: 330 KIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVKYG-IPPGK 379 + A T + F + + + P++G++++ + PG+ Sbjct: 375 TLCKADITTKNTKKQERFRKNFEYVAQKIKEVEEKDQIRNFQPPISGEEIMALFQLKPGR 434 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++G + K+ + + E+ + Sbjct: 435 EIGILKEKVKEAILEGEISNTPEEAKDFV 463 >gi|294670147|ref|ZP_06735072.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308074|gb|EFE49317.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 455 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 10/232 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++S L + ++ +VGGAVRD L+ +D D+AT P+ V +F ++R Sbjct: 38 AEKVVSRLQQAGYEAYVVGGAVRDLLIGAEPKDFDVATNATPEEVRAVFRRSRI----IG 93 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K D+ RRDFT NALY D Sbjct: 94 RRFRIVHVMVGPETIEVTTFRGGGKAVQNEQGRIMKDNTYGTLAEDAGRRDFTCNALYFD 153 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +G++ID+ G+ D++ R + IGD R ED +RILR R G ++ Sbjct: 154 PVKGEIIDFHNGVEDVKARRLVMIGDPAERYQEDPVRILRAVRLAGKLG-FTVEERTAAP 212 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 K LK R++ EI KLL + + + GI I + + Sbjct: 213 IAKYAGRLKEEPPARLFDEIMKLLFSGYARRCLDQFHTLGIDTPIHPLLDAL 264 >gi|298368846|ref|ZP_06980164.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314] gi|298282849|gb|EFI24336.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314] Length = 453 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 10/232 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ L+ ++ +VGGAVRD L+ + +D D+AT P+ V +IF ++R Sbjct: 40 AEKVVRRLHNEGFEAYVVGGAVRDLLLGIEPKDFDVATNATPEEVRKIFRRSRI----IG 95 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 96 RRFQIVHVMVGPETIEVTTFRGGGKVVQNQHGRIMKDNNYGSMEEDAMRRDFTCNALYYD 155 Query: 131 QQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++I D+ G D++ + + IG+ R ED +RILR R G ++ Sbjct: 156 PIRRLIVDFHHGAADVQAKKLVMIGNPAERYQEDPVRILRAVRLSGKLG-FEVEEHTAAP 214 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + LK R++ EI KLL + + + + + GI +I + + Sbjct: 215 IPEYAGRLKQEPVSRLFDEILKLLFSGHARDCLQQLNKLGIGSDIHPLLTAM 266 >gi|238910006|ref|ZP_04653843.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 413 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 142/348 (40%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATLQEMLDAGYQQVGRDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINAL D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDDDGQIIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y + ++ L+ + A L+ Sbjct: 114 RDLEARLLRHVSPA---FGEDPLRVLRVARFAARYAHLSFRIADETLALMREMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G + +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTLM---------TLSMAAMLSPQLDVRFATL----CHDVGKGLTPKNLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DLRDLAKLVAEYHDLIHTFPILQPKT 318 >gi|255068167|ref|ZP_05320022.1| poly(A) polymerase [Neisseria sicca ATCC 29256] gi|255047594|gb|EET43058.1| poly(A) polymerase [Neisseria sicca ATCC 29256] Length = 456 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 10/232 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ L+ ++ +VGGAVRD L+ + +D DIAT P+++ +IF ++R Sbjct: 41 AEKVVRRLHDEGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIHKIFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMVGPETIEVTTFRGGGKVQQNAHGRIMKDNTYGSMEEDAMRRDFTCNALYYD 156 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++ID+ G+ D+ +R + IG+A R ED +RILR R G +++ + Sbjct: 157 PIKEEIIDFHHGVGDIADRKLVMIGNAAERYQEDPVRILRAVRLSGKLG-FDVEENTAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + LK R++ EI KLL + + + + G+ ++ + + Sbjct: 216 IPEQAGRLKHEPVARLFDEIMKLLFSGYARECLKRLNSLGVSDDVHPLLTAL 267 >gi|237729977|ref|ZP_04560458.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Citrobacter sp. 30_2] gi|226908583|gb|EEH94501.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Citrobacter sp. 30_2] Length = 411 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L ++D D + P ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPIKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPQTRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD RRD TINA+ D G++ID G Sbjct: 57 ---EYALARTERKSGSGYTGFTCHAAADVTLEADLQRRDLTINAIARDDDGEIIDPYNGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL NR ++ + A ED LR+LR RF A Y ++ L+ + A L+ Sbjct: 114 DDLENRLLRHVSSA---FSEDPLRVLRVARFAARYAHLGFRIADETMTLMRDMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + + +F +V + + A + Sbjct: 171 HLTPERVWKETEGALTTRNPQVFFQVLRDCDALRVLFPEVDALF------GVPAPAQWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPEVDVRFATL----CHDLGKALTPKALWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCQRLRVPN-DIRDLAKLVSEFHDLIHTFPILQPKT 318 >gi|58581989|ref|YP_201005.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623904|ref|YP_451276.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576403|ref|YP_001913332.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426583|gb|AAW75620.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367844|dbj|BAE69002.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520855|gb|ACD58800.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Xanthomonas oryzae pv. oryzae PXO99A] Length = 455 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F Sbjct: 32 TISRKDIS-PNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ + +GR + + Sbjct: 91 RNCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEE 146 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 147 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + I++ + L + R++ EI KL + + + + + G+F + Sbjct: 207 SKLN-FEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLFGAL 265 Query: 235 FLD 237 F + Sbjct: 266 FPE 268 >gi|241664040|ref|YP_002982400.1| poly(A) polymerase [Ralstonia pickettii 12D] gi|240866067|gb|ACS63728.1| poly(A) polymerase [Ralstonia pickettii 12D] Length = 520 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 122/269 (45%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + + IVGGAVRD L+ + +D D+AT PD+V +F ++R Sbjct: 66 PKLLSRNAVKVTSTLQEAGYSAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSR 125 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 126 I----IGRRFQIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHA 181 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y + + V DY G+ D+R RT++ IGD Sbjct: 182 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLRMIGDP 241 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A G +ID D + + + + R++ E+ KLL + Sbjct: 242 LTRYREDPVRMLRVVRFAAKTG-FDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSG 300 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + + +++L+Q Sbjct: 301 HAWASLQELRKAGLHRGLLP-LLDVALEQ 328 >gi|197286208|ref|YP_002152080.1| multifunctional tRNA nucleotidyltransferase/2'-nucleotidase/2',3'-cyclic phosphodiesterase [Proteus mirabilis HI4320] gi|226702074|sp|B4EW50|CCA_PROMH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|194683695|emb|CAR44665.1| multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase and 2',3'-cyclic phosphodiesterase] [Proteus mirabilis HI4320] Length = 407 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 145/350 (41%), Gaps = 33/350 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+NL V+D D + P+ +++ + K P + T + Sbjct: 2 KIYLVGGAVRDQLLNLPVKDRDWVVVGATPETLLQQGYQQVGKDFPVFLHPDTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ +G+ ID G+ Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAIAYSAKGEYIDPYHGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +D+ + ++ + DA ED LR+LR RF A + ++ L+ + L Sbjct: 114 DDIHAKLLRHVSDA---FSEDPLRVLRVARFAARFAPLGFTIAPETMSLMQEMTNSGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L ++ P ++ G K +F ++ + + A + + Sbjct: 171 ALTAERVWKETEKALHSQAPQVYFEILHQCGALKILFPEINALF------GVPAPKKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKK 315 +ID+ + +++++ + + +A +FS ++ + +P ++ Sbjct: 225 EIDTGIHTMMVLAMVSRLT-DDIAVRFSALCHDLGKGVTPVENWPHHHGHGPTGVPLVEA 283 Query: 316 LFYLYGDKVMIAKLKIFLA---LHYNNLTHQDTCFILQVLSDIIHWKKPL 362 L Y I L A H + + I+++ I W+KP Sbjct: 284 LCQRYRIPNQIRDLAKLAAKYHDHLHRIERMRPSKIIRLFDAIDAWRKPE 333 >gi|156932580|ref|YP_001436496.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Cronobacter sakazakii ATCC BAA-894] gi|166233853|sp|A7MJU1|CCA_ENTS8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|156530834|gb|ABU75660.1| hypothetical protein ESA_00362 [Cronobacter sakazakii ATCC BAA-894] Length = 415 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 82/346 (23%), Positives = 146/346 (42%), Gaps = 40/346 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P ++ + + K P + T + Sbjct: 2 KSYLVGGAVRDALLGLPVKDKDWVVVGATPAEMLALGYQQVGKDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ D G+ ID G Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEQDLQRRDLTINAIAQDDSGEFIDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL+ R ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 DDLKARLLRHVSPA---FNEDPLRVLRVARFAARYAHLGFRIAPETLSLMREMAENGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E L +NP + ++ G K +F +V ++ + A + Sbjct: 171 HLTAERVWKETESALTTRNPQIYFLMLHECGALKVLFPEVDKLF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA S ++R+ + C+ K L+ P + + Sbjct: 225 EIDTGIHTLM---------TLAMAAMLSPAVDVRFAAL----CHDLGKGLTPPHLWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +G + ++ L N +D ++ D+IH L P Sbjct: 272 GHGPAGVRLVAQVCERLRVPN-DIRDLAKLVAEFHDLIHTFPILKP 316 >gi|284035597|ref|YP_003385527.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirosoma linguale DSM 74] gi|283814890|gb|ADB36728.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Spirosoma linguale DSM 74] Length = 484 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 83/463 (17%), Positives = 173/463 (37%), Gaps = 68/463 (14%) Query: 8 KWFHDSDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 H + + +++ ++ + ++GG VRD ++ +DID+ + K Sbjct: 5 DTLHKNPVFDVVSQQADRLGLPTYVIGGFVRDLILARPSKDIDVVCIGSGITLAEAVGKA 64 Query: 67 RYKVIPTSISYGTIKIIC----RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + ++GT + + + R + +V + D RRDF Sbjct: 65 LNAHVAVFPNFGTAMLRAMQGDEEWEVEFVGARKESYRSESRKPIVEDGTLEDDQNRRDF 124 Query: 123 TINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINA+ G+++D GL DL+ + I+ + +D LR++R RF + Sbjct: 125 TINAMGISLNKASFGELLDPFDGLKDLKKKIIRTPLNPDITFSDDPLRMMRAIRFASQL- 183 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +I+ D A ++ + + I+S ER+ E+NK++ + P +Y+GG+ + IF ++ Sbjct: 184 TFDIEPDTFDAIMRMNERIDIVSRERVTDELNKIILSPVPSYGFKLLYHGGLLERIFPEL 243 Query: 239 QEIS--------------------LDQLSQVIEAEQVF-EWKIDSLLRFIVLISWQDKKS 277 + LD ++ + Q E + + LR+ L+ K + Sbjct: 244 IALKGVETIEGKGHKDNFYHTLQVLDNIANRADKNQYPGEAENELWLRWAALLHDIAKPA 303 Query: 278 ILSMAKK----------------------FSLP-REIRYFLISFFNCNFNQKTLSIPEIK 314 +K LP E F+ + L+ +I Sbjct: 304 TKRFDQKAGWTFHGHEDLGARWVPGIFRTMKLPLNEHMRFVQKLVRLHLRPIALTKEQIT 363 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI-------------LQVLSDIIHWKKP 361 L+ +AL ++T ++ + L L + + Sbjct: 364 DSALRRLLVDAGEDLEGLMALCRADITSKNYERVQKHLRNFDRVERKLHDLEERDKLRSF 423 Query: 362 LFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 +TG+ +++ +G+PP K+VG I ++ ++ S + Sbjct: 424 QPVITGELIMETFGLPPSKEVGEIKTVLREAILDGLVPNSLDA 466 >gi|288550419|ref|ZP_05970346.2| multifunctional CCA protein [Enterobacter cancerogenus ATCC 35316] gi|288315128|gb|EFC54066.1| multifunctional CCA protein [Enterobacter cancerogenus ATCC 35316] Length = 415 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 85/362 (23%), Positives = 154/362 (42%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P+ ++ + + P + K Sbjct: 4 KSYLVGGAVRDALLGLPVKDKDWVVVGATPEEMLDAGYQQVGRDFPVFLHP--------K 55 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD T+NAL D+ G++ID GG Sbjct: 56 SREEYALARTERKSGAGYTGFTCYAAPDVTLEQDLLRRDLTVNALAQDEHGQIIDVYGGQ 115 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDLR+R ++ + A ED LR+LR RF A Y + ++ L+ ++ L Sbjct: 116 NDLRDRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIAEETLALMTAMTEAGELA 172 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G K +F ++ + + A + Sbjct: 173 HLTPERVWKETENALTTRNPQVFFQVLRDCGALKVLFPEIDALF------GVPAPAKWHP 226 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ + + Sbjct: 227 EIDTGVHTLM---------TLSMAAMLSPEVDVRFSTL----CHDLGKGLTPKALWPRHH 273 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L +++L H I+++ +I W+K Sbjct: 274 GHGPAGVKLVEGLCQRLRVPNDIRDLAKLVAEFHDLIHTFPILKPATIVKLFDNIDAWRK 333 Query: 361 PL 362 P Sbjct: 334 PQ 335 >gi|288921203|ref|ZP_06415489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EUN1f] gi|288347410|gb|EFC81701.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EUN1f] Length = 491 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 91/452 (20%), Positives = 166/452 (36%), Gaps = 62/452 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLS--VQDIDIATTILPDRVMRIFSKTRYKVIP 72 + + +VGG+VRDSL+ + D+D T P+RV+ I Sbjct: 25 ADELGRIFADHGHALYLVGGSVRDSLLGRAQSAPDLDFTTDARPERVLEITRGWAEATWE 84 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 I++GT+ + R F++TT RS+ R V + D +RRDFT+NA+ Sbjct: 85 AGIAFGTVGLARRGVRFEVTTYRSETYDRTSRNPTVTYGDGLHGDLVRRDFTVNAMAVSV 144 Query: 132 QG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G +D GG+ DL ++ G +D LRILR RF A G + + A Sbjct: 145 PGHDFVDLFGGMADLARGVLRTPGVPEASFDDDPLRILRAARFEAALG-LTPVPELVAAM 203 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + +KI+S ER+ E+ KL+ + NP+ + + + GI + ++ + + ++ + Sbjct: 204 RSRAERIKIVSPERVRDELRKLIASPNPIAGLERLVDVGIADIVLPELGAMRM-EIDEHH 262 Query: 251 EAEQVFEWK--------------IDSLLRFIVLISWQDKKSILS---------------- 280 + + V+ D +LR+ L+ K Sbjct: 263 QHKDVYAHTMTVLSQAMALEDDGPDEILRWAALLHDIGKPRTRRHIPGGRVSFHHHEVVG 322 Query: 281 --MAKK----FSLPREIRYFLISFFNCNFNQKTLSI----------------PEIKKLFY 318 M ++ P+++ + S + P++ +L Sbjct: 323 RDMTRRRLTALRFPKDVTDAICSLVFLHLRFHGYGSGEWTDSAVRRYVHDAGPQLNRLHK 382 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377 L + +L + ++ L +I + L+GDD++ +PP Sbjct: 383 LVRSDCTTRNRRKAESLARTYDSLEERIADLAASEEIAAIRPE---LSGDDIMALLALPP 439 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + VG H + LLR Sbjct: 440 SRLVGKAREHMLDVRFERGLLGREAAEAELLR 471 >gi|256004006|ref|ZP_05428992.1| CBS domain containing protein [Clostridium thermocellum DSM 2360] gi|255992134|gb|EEU02230.1| CBS domain containing protein [Clostridium thermocellum DSM 2360] Length = 870 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 162/406 (39%), Gaps = 20/406 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 LI + + + +VGG VRD ++ + DIDI ++ + Sbjct: 469 LIEAGKIADDVGLNAYVVGGFVRDLILGVENFDIDIVVEGDALMFSEKLAQHYQAHLTKH 528 Query: 75 ISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA---- 129 +GT ++ + D+ T R + VV K D RRDFTIN++ Sbjct: 529 DRFGTAVVVLEDDFKIDVVTARKEYYEYPASLPVVEGGTIKDDLFRRDFTINSMAIKLNK 588 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G ++D+ GG DL+ I+ + + +ED RI R RF Y K + A Sbjct: 589 SGFGNIVDFYGGRRDLQMGLIRILYN--LSFVEDPTRIFRAIRFEQRYDFKMEEKTEEFA 646 Query: 190 SIK-AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV---------Q 239 L +S ERI E +L+ N + M + I K ++ +V Sbjct: 647 IKAIESGILGKVSHERINFEFFAMLKENNIWAILKRMEDLRILKNVYPEVVLSEDLKKLL 706 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + + + L+ + E V E +LL ++L S + + +++K L +E + ++ F Sbjct: 707 KNAEENLACLKEKVSVQESLDRTLLYLLILYSNMSFEKAVKLSEKMRLSKEYKSEILKFI 766 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + I Y +++ ++I L + + FI +V+ I + K Sbjct: 767 EAKDIILSNLSGNIDISNYDVYNELKELSMEILFVLC---MLSNEKKFIDRVILYINNLK 823 Query: 360 KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 +TG D+ + G+ PG + +L E +N + Q ++L Sbjct: 824 NIKTCVTGKDLKELGVKPGPEYAVLLDKVLAEKLNGNLQTYNDELE 869 >gi|145589945|ref|YP_001156542.1| poly(A) polymerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048351|gb|ABP34978.1| poly(A) polymerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 467 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 17/232 (7%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD ++ + +D D+AT P++V R+F K R Sbjct: 39 PHLLSKNAVKVTHTLQQAGYEAFIVGGAVRDLVLGIEPKDFDVATNATPEQVQRLFRKAR 98 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS-------DLITDGRYAKVVFTRDWKAD 116 + + + + +++T R+ + GR + D Sbjct: 99 L----IGRRFQIVHVTFFGKGHPEIIEVSTFRALLDNAGDHVAESGRILRDNVWGSQGED 154 Query: 117 SLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINA+Y D + V+DY GG+ D++ +T++ IGD R ED +R+LR RF A Sbjct: 155 AARRDFTINAMYYDPSTETVLDYHGGMADMQKKTLRMIGDPAKRYREDPIRMLRAIRFAA 214 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 G +D + K L + S R++ EI KLL + AI + + Sbjct: 215 KTG-FALDPNTRSPIAKLGTLLHDVPSARLFDEILKLLMSGYSWAAIQGLRD 265 >gi|83648899|ref|YP_437334.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis KCTC 2396] gi|83636942|gb|ABC32909.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis KCTC 2396] Length = 457 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 19/261 (7%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 V K + +L LN + +VGG VRD L+ +D D+AT+ P++V F Sbjct: 32 TVSRKQIS-PAALKVLYRLNSANYDAFLVGGGVRDLLLGEQPKDFDVATSATPEQVREQF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSD------------LITDGRYAKVVFTR 111 + R + + ++ ++ T R+ G+ + Sbjct: 91 NNCRL----IGRRFRLAHVRFGREIIEVATFRAGHQNAGEDDGDAVTSDSGQILRDNVYG 146 Query: 112 DWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 + + D+LRRDFT+NALY + + DY GG+ D+ +R ++ IGD R ED +R+LR Sbjct: 147 NQEEDALRRDFTVNALYYCVRDFSIYDYAGGIEDIEHRVLRLIGDPETRYREDPVRMLRA 206 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF A + +I+ ++ L + S R++ E+ KL + + + + Sbjct: 207 ARFAAKL-DFSIEERTASPILELGPLLLNIPSARLFEEVLKLFLSGKAVRTFEILRQFDL 265 Query: 231 FKEIFLDVQEISLDQLSQVIE 251 FK +F + + ++ + Sbjct: 266 FKFLFPETDRLLENEHPHAEK 286 >gi|189500462|ref|YP_001959932.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobium phaeobacteroides BS1] gi|189495903|gb|ACE04451.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobium phaeobacteroides BS1] Length = 475 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 92/463 (19%), Positives = 167/463 (36%), Gaps = 62/463 (13%) Query: 15 LINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYK 69 L +IL + D++ +VGG VRD+LMN DIDI P ++ + + K Sbjct: 12 LPDILYRIGDIADRTDTPCYLVGGYVRDNLMNTPSHDIDIMIIGEPIPFAKLVEQELKGK 71 Query: 70 VIPTSISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + T ++ +I R + + + D RRDFTI Sbjct: 72 NFVVFERFRTARLELDSSQEETTVVEIVGARKESYNPDSRKPITEIGSLEDDLSRRDFTI 131 Query: 125 NALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 NAL + ++D G +DL+ + ++ + H +D LR++R RF + Sbjct: 132 NALAVQLNNEHRNSIVDLFNGYDDLQKKMLRTPLEPHKTFSDDPLRMMRAARFACQL-DF 190 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 +D L A + + I+S ERI E K++ + P + +Y+ GI I ++ Sbjct: 191 QLDRQALNAMTDMAERITIVSRERISQEFLKIITCRKPSVGLKILYSTGILGHIMPELNA 250 Query: 241 IS----------LDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAKK----F 285 ++ D L + K D+L LR L K K F Sbjct: 251 MAGIEQVDGLGHKDTLLHTFQVVDKLAEKSDNLWLRIAALFHDIAKPVTKRFNKHAGWTF 310 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK----------------- 328 + L + +P ++K+ L+ + ++K Sbjct: 311 HGHEAVGKKLCGNIFRSMRWPLDPLPYVQKMIRLHHRPIPLSKGEITDSAVRRLMYDAGN 370 Query: 329 -LKIFLALHYNNLTHQDTCFILQVL-------------SDIIHWKKPLFPLTGDDVVK-Y 373 L + L ++T ++ + +++ ++ K P+TG D++ Sbjct: 371 DLDDLMTLCRADVTSKNPRKVQRIMNNFNIVEKKITEVAEKDLLAKWRPPITGSDIMDTL 430 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ GK VG I + I +E ++K Q Sbjct: 431 GLSEGKLVGIIKNRMETAVIEGEIPYDREAALEYIKKTYREMQ 473 >gi|190573757|ref|YP_001971602.1| putative poly(A) polymerase [Stenotrophomonas maltophilia K279a] gi|190011679|emb|CAQ45298.1| putative poly(A) polymerase [Stenotrophomonas maltophilia K279a] Length = 461 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 154/401 (38%), Gaps = 57/401 (14%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + +VGGAVRD L+N +D D+AT P++V ++F Sbjct: 34 TISRKDIS-PNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLF 92 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ +G + + Sbjct: 93 RNCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIED 148 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 149 DAVRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLA 208 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G + I+ + L + R++ E+ KL + + + + + G+ + Sbjct: 209 AKLGFQ-IEEGTAAPIPQLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVL 267 Query: 235 FLD----VQEISLDQLSQVI------EAEQVFEWKIDSLLRFIVLISWQD---------- 274 F + ++ L +++ +V + S L+ W Sbjct: 268 FPESARALKSNRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAFCRAQATLLK 327 Query: 275 -------------------KKSILSMAKKFSLPREIRYFLISFFNCNFNQ---KTLSIPE 312 + S +++ ++FSLP + + L S F+ + +TL+ P Sbjct: 328 QGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQSRFSSRQRKRVFRTLTHPR 387 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 + F + + + + Q + L Sbjct: 388 FRAAFDFLSLRQVASAEHAADVEFWREAQAQSGRELESSLD 428 >gi|167752331|ref|ZP_02424458.1| hypothetical protein ALIPUT_00575 [Alistipes putredinis DSM 17216] gi|167660572|gb|EDS04702.1| hypothetical protein ALIPUT_00575 [Alistipes putredinis DSM 17216] Length = 472 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 81/451 (17%), Positives = 166/451 (36%), Gaps = 55/451 (12%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 I ++ ++ + +VGG VRD + DID+ + + + ++ Sbjct: 18 ISAIASRQGVPAFVVGGYVRDFYLGRPSTDIDVVVVGSGIGLAEELGRELRTKVSVYKTF 77 Query: 78 GTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQG 133 GT + + + R + V + D RRDFTINA+ + G Sbjct: 78 GTAALRTKGVEVEFVGARKESYVRDSRKPQVEAGTLEDDQRRRDFTINAMAWSLGEEDFG 137 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA 193 +++D G+ DL I+ D +D LR++R RF + + + A ++ Sbjct: 138 RLVDPFDGMRDLHEGIIRTPCDPDVTFSDDPLRMMRAVRFASQLNFRLF-PETFEAIVRN 196 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 ++ + I+S ERI E+NK++ + P + G+ + IF ++Q + + + Sbjct: 197 RERIGIVSRERIAVELNKIVLSPVPSVGFDLLERTGLLELIFPEMQRLKGVERRGQHAHK 256 Query: 254 QVFEWKI-----------DSLLRFIVLISWQDK----------------------KSILS 280 F + D LR+ ++ K K + + Sbjct: 257 DNFYHTLKVLDNVAAVSDDLWLRWAAILHDIGKPLTKAYDPQVGWTFHSHEVVGSKMVPA 316 Query: 281 MAKKFSLP-REIRYFLISFFNCNFNQKTLSIP-----EIKKLFYLYGDKVMIAKLKIFLA 334 + + LP E F+ + LS +++L + GD V + + A Sbjct: 317 IFRALKLPMNEHMKFVRKMVFLHLRPIILSEDMVTDSAVRRLLFEAGDDVE-KLMTLCEA 375 Query: 335 LHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNI 384 + + + ++ L + + P+TG+ +++ YG+PP + +G I Sbjct: 376 DITSGIDAKVKRYLRNFELVRRKMKDLEERDRIRNFQPPITGEIIMETYGVPPSRIIGEI 435 Query: 385 LVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 K+ + E + L+ +L Sbjct: 436 KEIIKEAILEGEIPNDYEAAYALMERLADER 466 >gi|262163987|ref|ZP_06031726.1| poly(A) polymerase [Vibrio mimicus VM223] gi|262027515|gb|EEY46181.1| poly(A) polymerase [Vibrio mimicus VM223] Length = 413 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 20/254 (7%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 ++ ++ +VGG VRD L+ +D D+AT P+++ ++F R + Sbjct: 1 MHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRL----IGRRFRLAH 56 Query: 82 IICRKKYFDITTLRSDL------------ITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 I+ + ++ T R G + D+ RRDFTINA+Y Sbjct: 57 IMFGRDIVEVATFRGHHQETSQSQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYY 116 Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + + DY GG+ DL +R ++ IGD R ED +R+LR RF + +I+ D Sbjct: 117 NIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKL-DFDIEEDTAE 175 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 L+ + + R++ E K+L+A + L M +F+++F + E S Sbjct: 176 PIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFPTIAEHFTADHSS 235 Query: 249 VIEAEQVFEWKIDS 262 + EQ+ + +D+ Sbjct: 236 --QTEQMLDLVLDA 247 >gi|319442217|ref|ZP_07991373.1| tRNA nucleotidyltransferase [Corynebacterium variabile DSM 44702] Length = 485 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 86/468 (18%), Positives = 164/468 (35%), Gaps = 71/468 (15%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 HD L + +VGG+VRD+L+ D+D T P+ V I + V Sbjct: 12 HDRTLTALAGAFATRGHSLFLVGGSVRDALLGRLSHDLDFTTDARPEVVTGILDEVASTV 71 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY- 128 T I++GT+ + +ITT R+D R +V + D +RRDF NA+ Sbjct: 72 WDTGIAFGTVSGLIHGMTVEITTFRADQYDGSSRNPEVTYGTSLDEDLVRRDFRGNAIAL 131 Query: 129 ---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 AD ++ D + GL DL N + +D LR+LR RF + G + Sbjct: 132 ELSADGAHELRDPLNGLEDLVNGVLDTPAAPEQSFHDDPLRMLRACRFASQLG-FEVAPR 190 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 A + + ++ ER+ +E++KL+ P + M GI + ++ + L Q Sbjct: 191 VQDAMTRMAAEIDRITVERVAAELDKLMLGAEPWTGLDLMVATGIAAHVLPELPALQLTQ 250 Query: 246 ----------------LSQVIEAEQVFEWKIDS------------LLRFIVLISWQDKKS 277 L V E E + +LR+ L+ K + Sbjct: 251 DEHRQHKDVYAHSLQVLRNVTELEGRLAGDPEEAEDAEALDHRRLVLRWAALMHDCGKPA 310 Query: 278 ILSM----------------------AKKFSLPREIRYFLISFFNCNFNQKTL---SIPE 312 + K P++ + + + + Sbjct: 311 TRAFTESGAVTFHHHEVVGARMTRKRLKALKFPKKTTEEIGQLVFLHMRFHGYGEGAWTD 370 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV----------LSDIIHWKKPL 362 Y+ ++ +L++ + + + +V L + Sbjct: 371 SAVRRYVTDAGDLLPQLQLIVRADCTTRNKRKAARLQRVCDDLDARIVELKEKEDLAAVR 430 Query: 363 FPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L G+++++ G+ PG +VG + K+ ++ + ++ L+ Sbjct: 431 PELDGNEIMEILGLAPGPEVGKAWAYLKELRLDRG-PMEHDEAVAALK 477 >gi|89074127|ref|ZP_01160626.1| putative polyA polymerase [Photobacterium sp. SKA34] gi|89050063|gb|EAR55589.1| putative polyA polymerase [Photobacterium sp. SKA34] Length = 447 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 28/256 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R Sbjct: 17 SENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLR----------------------SDLITDGRYAKVVF 109 + I+ + ++ T R S +G + Sbjct: 74 -IGRRFRLAHILFGRDIIEVATFRGHHSDAPVQTTTPKDSKQKPQISSRSQEGMLLRDNV 132 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTINALY + V DY G++DL NR ++ +GD R ED +R+L Sbjct: 133 YGTIEEDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYREDPVRML 192 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF + ID + + S R++ E KLL++ L + Sbjct: 193 RAVRFAVKL-DMEIDPATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLETYRMLREY 251 Query: 229 GIFKEIFLDVQEISLD 244 +F+++F + + + Sbjct: 252 NLFQQLFPILADHFTE 267 >gi|52424981|ref|YP_088118.1| PcnB protein [Mannheimia succiniciproducens MBEL55E] gi|52307033|gb|AAU37533.1| PcnB protein [Mannheimia succiniciproducens MBEL55E] Length = 425 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 135/325 (41%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + ++++ LN+ ++ +VGG +RD L++ +D D+AT PD++ IF + R Sbjct: 3 SKNALSVVEKLNRNGYEAYVVGGCLRDLLLDKKPKDFDVATNARPDQIQAIFQRQCRL-- 60 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 61 --VGRRFRLAHIMFGRDIIEVATFRANHSDIENENASKQSEEGMLLRDNVYGTLEQDAER 118 Query: 120 RDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 119 RDFTVNALYYSPKDNLVYDYFNGIEDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 178 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 +D K LK + R++ E KLL++ + + +F+++F + Sbjct: 179 MF-LDKSSAPHIRKLAHLLKNIPPARLFDESLKLLQSGQGVKTYNLLREYHLFEQLFPSL 237 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E++ + +++ F + ++ + + + L Sbjct: 238 MPYFTERGDSFAERMILTALTSTDERIADKLRVNPAFLFAAFFWYPLREKVEILKNEGGL 297 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L S + K L+ P Sbjct: 298 NNHDAYALASNEILDLFCKNLAAPR 322 >gi|256820884|ref|YP_003142163.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Capnocytophaga ochracea DSM 7271] gi|256582467|gb|ACU93602.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Capnocytophaga ochracea DSM 7271] Length = 469 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 88/443 (19%), Positives = 168/443 (37%), Gaps = 70/443 (15%) Query: 28 KSCIVGGAVRDSLMNLS-VQDIDIATTI----LPDRVMRIFSKTRYKVIPTSISYGTIKI 82 +S ++GG VRD L+ +DID+ + L ++V + ++GT I Sbjct: 25 ESYVIGGFVRDYLLEKKLPKDIDVVSIGSGISLAEKVAERLPNA--PKVSIFKNFGTAMI 82 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDY 138 + R + V + + D RRDFTINA+ D G++ID Sbjct: 83 KADGLDIEFVGARRESYEANSRKPYVESGTLQDDQNRRDFTINAMAFSLNRDTFGELIDP 142 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL+ + I+ D +D LR++R RF K I+ L A K+ LK Sbjct: 143 FDGLGDLKRKLIRTPLDPDITYSDDPLRMMRAIRFATQLNFK-IEKQSLKAITDNKERLK 201 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLDQLSQ 248 I+SSERI E+NK+L + P + +Y G+ I ++ + D Sbjct: 202 IISSERIVEELNKILASPKPSIGLKLLYETGLLHYILPELIALQGVEEHDGQRHKDNFWH 261 Query: 249 VIEAEQVFEWKIDSL-LRFIVLISWQDK----------------------KSILSMAKKF 285 +E D+L LR+ L+ K K + + K+ Sbjct: 262 TLEVVDNISENTDNLWLRWAALLHDIGKAPTKRFDKKIGWTFHGHEFVGSKMVYHLFKRL 321 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEI------KKLFYLYGDKVMIAKLKIFLALHYNN 339 +P + + ++ + +I ++L + G++ + + L + Sbjct: 322 RMPLNDKMKYVQKIVKMSSRPIIIADDIVTDSAVRRLVFDAGEE-----FEDLMTLCEAD 376 Query: 340 LTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 +T ++ + + + H + P++G+++++ + +PP + VG + Sbjct: 377 ITTKNPKKFKKYHDNFQIVRQKVVEVEEKDHIRNFQPPVSGEEIMQTFNLPPSQPVGMLK 436 Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408 K+ + E + Sbjct: 437 EAIKEAILEGKIPNEYEAAKAFM 459 >gi|90580267|ref|ZP_01236074.1| putative polyA polymerase [Vibrio angustum S14] gi|90438569|gb|EAS63753.1| putative polyA polymerase [Vibrio angustum S14] Length = 447 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 28/256 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK + +VGG VRD L++ +D DIAT P+ + ++F R Sbjct: 17 SENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEDIKKLFRNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLR----------------------SDLITDGRYAKVVF 109 + I+ + ++ T R S +G + Sbjct: 74 -IGRRFRLAHILFGRDIIEVATFRGHHSDAPIQATAPKDSKQKPQISSRSQEGMLLRDNV 132 Query: 110 TRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 + D+ RRDFTINALY + V DY G++DL NR ++ +GD R ED +R+L Sbjct: 133 YGTIEEDAERRDFTINALYYSVKDFTVTDYANGVHDLNNRIVRLMGDPETRYREDPVRML 192 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF + ID + + S R++ E KLL++ L + Sbjct: 193 RAVRFAVKL-DMEIDPATAAPIKDLAPLMLDIPSARLFEESLKLLQSGQGLETYRMLREY 251 Query: 229 GIFKEIFLDVQEISLD 244 +F+++F + + + Sbjct: 252 NLFQQLFPILADHFTE 267 >gi|227357324|ref|ZP_03841681.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Proteus mirabilis ATCC 29906] gi|227162587|gb|EEI47576.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Proteus mirabilis ATCC 29906] Length = 407 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 145/350 (41%), Gaps = 33/350 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+NL V+D D + P+ +++ + K P + T + Sbjct: 2 KIYLVGGAVRDQLLNLPVKDRDWVVVGATPETLLQQGYQQVGKDFPVFLHPDTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ +G+ ID G+ Sbjct: 57 ---EYALARTERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAIAYSAKGEYIDPYHGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +D+ + ++ + DA ED LR+LR RF A + ++ L+ + L Sbjct: 114 DDIHAKLLRHVSDA---FSEDPLRVLRVARFAARFAPLGFTIAPETMSLMQEMTNSGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L ++ P ++ G K +F ++ + + A + + Sbjct: 171 ALTAERVWKETEKALHSQAPQVYFEILHQCGALKILFPEINALF------GVPAPKKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKK 315 +ID+ + +++++ + + +A +FS ++ + +P ++ Sbjct: 225 EIDTGIHTMMVLAMVSRLT-DDIAVRFSALCHDLGKGVTPVENWPHHHGHGPAGVPLVEA 283 Query: 316 LFYLYGDKVMIAKLKIFLA---LHYNNLTHQDTCFILQVLSDIIHWKKPL 362 L Y I L A H + + I+++ I W+KP Sbjct: 284 LCQRYRIPNQIRDLAKLAAKYHDHLHRIEKMRPSKIIRLFDAIDAWRKPE 333 >gi|224825650|ref|ZP_03698754.1| poly(A) polymerase [Lutiella nitroferrum 2002] gi|224601874|gb|EEG08053.1| poly(A) polymerase [Lutiella nitroferrum 2002] Length = 455 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 13/253 (5%) Query: 1 MVSIVQHKWFHDS---DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 ++ + QH D + + S L + + +VGGAVRD L++++ +D D+AT+ P+ Sbjct: 26 VIPLSQHGVRRDRLSHAALKVTSRLQEAGFTAYVVGGAVRDLLLDVNPKDFDVATSATPE 85 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDW 113 +V +F ++R + + ++ + ++TT R I D GR Sbjct: 86 QVHHLFRRSRI----IGRRFKIVHVMVGPETIEVTTFRGGSIDDTNETGRIMADNSYGSQ 141 Query: 114 KADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFT+NAL+ D + ++DY G+ DL+ R + IG R ED +R+LR R Sbjct: 142 EEDAHRRDFTVNALFYDPSDESIVDYHHGVKDLQARKLVMIGQPARRYQEDPVRMLRAVR 201 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 A ID + LK R++ E+ KLL + + + + G+ + Sbjct: 202 LAAKLN-FEIDENTRKPIRAHAHLLKKEPPARLFDEMLKLLMSGQAYSCLCKLREEGLSR 260 Query: 233 EIFLDVQEISLDQ 245 +F + + ++ Sbjct: 261 GVFPLLDAVLDEE 273 >gi|224437602|ref|ZP_03658555.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818] gi|313144052|ref|ZP_07806245.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818] gi|313129083|gb|EFR46700.1| poly(A) polymerase [Helicobacter cinaedi CCUG 18818] Length = 465 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 186/456 (40%), Gaps = 76/456 (16%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLM---------NLS--------VQDIDIATTILPDRVM 60 ILS L K+ IVGG VRD ++ L D DIAT+ LP V+ Sbjct: 22 ILSQLQMSGYKAYIVGGCVRDMILHTLECSDNAGLKSDLAYQNLPSDYDIATSALPSEVI 81 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSL 118 R+F +T IPT + +GTI +I K ++I+T R + + A V FT + + D Sbjct: 82 RLFPRT----IPTGLKHGTISVIYDNKIYEISTFRIEGAYSNKRAPDSVRFTTELEQDLQ 137 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFT+NAL +ID VGGL D+ NR I +G+AH R ED LRILR RF A Sbjct: 138 RRDFTMNALAYSPHTGLIDKVGGLRDIINRKIVCVGEAHLRFNEDALRILRVLRFAATL- 196 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG-GIFKEIFLD 237 + I+S A + K L +S ERI E+ KLL + M + F Sbjct: 197 DFEIESHTDSALRECAKNLCYISKERIKDELTKLLCGRAAE---KIMRKYSDVLNVAFGG 253 Query: 238 -VQEISLD-QLSQVIEAEQVFEWKIDSLLRFIVLISW---QDKKSILSMAKKFSLPREIR 292 + L+ +L Q IE+ + F W L + W + + + + R Sbjct: 254 MISFEGLEVRLPQNIES-KAFVWA----LFLAQVCDWGKTSKRDKADKILESLKFDNKTR 308 Query: 293 YFLISFFN-CNFNQKTLSIPEIKKLFYLY----------------------------GDK 323 ++ C +T ++ L G++ Sbjct: 309 RYVSEILKACEIPLETNRQEIAGRIIALGGRETREFGHLERGCASEKMSGDKELSISGER 368 Query: 324 VMIAKLKIFLALHYNNLTHQDTCF--------ILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 ++ +++ +A+ +LT + QVL + + GDD+ G Sbjct: 369 ILRDMIRLKMAVVAQDLTQDSAQKGLKEFQKNMEQVLVSNLPLSLKELCINGDDIKALGF 428 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 GK +G IL +E ++ + S+E L +L Sbjct: 429 V-GKDIGRILQILLEEIVSEKLKHSREALLIRAVEL 463 >gi|56963834|ref|YP_175565.1| tRNA CCA-pyrophosphorylase [Bacillus clausii KSM-K16] gi|73619751|sp|Q5WGA1|CCA_BACSK RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|56910077|dbj|BAD64604.1| poly(A) polymerase [Bacillus clausii KSM-K16] Length = 376 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 163/394 (41%), Gaps = 33/394 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + LN ++ IVGGAVRD L+ V D+DIAT P +V IF+ K + + Sbjct: 8 FKAVRTLNAAGFEAYIVGGAVRDYLLGKDVDDVDIATQASPHQVADIFT----KGVHINQ 63 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 + T+ I K +ITT + + D +RDFTINAL + +V Sbjct: 64 EHKTVLIPGEKGPIEITTYKGE--------------TLAEDLQKRDFTINALAMTETREV 109 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG DL+ R ++ DA R+ ED LR+LR RF + G D + + K Sbjct: 110 IDPYGGRQDLQKRLLRS-YDAQKRLSEDPLRMLRAARFISSLG-FEADRQLVKETTVQKA 167 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE-Q 254 L+ + ER+ E+ KLL+ A + G + +Q I+ QL++++ Q Sbjct: 168 ALQRCARERVVVELEKLLKGMETEAAFAFLQETGAIHSL-PGIQ-ITDSQLAELMRLPKQ 225 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 ++ + L F + + L + KK +++ + F Q+ S + Sbjct: 226 QWDSGDRAWLEFAICTGGPSSMAALPLPKKR---KQLVAAGLKAFEYRQTQQRWSDWQ-- 280 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 Y+ G + + +I ++ ++ + + S + K +TG D++ Sbjct: 281 --LYISGLAIAMQIEEIRAGRQLPSIQKEE---LAEQWSALPIKAKSDLAITGRDLLHAK 335 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PG + L ++ + + + L Sbjct: 336 AAPGPWMKEALQAAEKAVVTKKCPNEKAAILAFL 369 >gi|309781368|ref|ZP_07676104.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA] gi|308919781|gb|EFP65442.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA] Length = 521 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 121/269 (44%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + IVGGAVRD L+ + +D D+AT PD+V +F ++R Sbjct: 67 PKLLSRNAVKVTSTLQDAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSR 126 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 127 I----IGRRFQIVHVTFYGGRDQEIIEVSTFRALVDAVDAEQVPAGKRVKRTELDHHTHA 182 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y + + V DY G+ D+R RT++ IGD Sbjct: 183 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLRMIGDP 242 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A G +ID D + + + + R++ E+ KLL + Sbjct: 243 LTRYREDPVRMLRVVRFAAKTG-FDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSG 301 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + + +++L+Q Sbjct: 302 HAWASLQELRKAGLHRGLLP-LLDVALEQ 329 >gi|146308605|ref|YP_001189070.1| poly(A) polymerase [Pseudomonas mendocina ymp] gi|145576806|gb|ABP86338.1| poly(A) polymerase [Pseudomonas mendocina ymp] Length = 463 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 20/240 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I+++ L K ++ +VGG VRD L+++ +D D+AT+ P++V F R Sbjct: 39 SRHAISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATSATPEQVRAEFRNARV--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADS 117 + + + ++ ++ T R++ GR + + D+ Sbjct: 96 -IGRRFKLVHVHFGREIIEVATFRANHPQGEEEENSNQAARHESGRILRDNVYGTLEDDA 154 Query: 118 LRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFTINALY D + ++DY G++D+RN ++ IGD R LED +R+LR RF A Sbjct: 155 QRRDFTINALYYDPTQEHILDYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAK 214 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +I+ + L+ + + R++ E+ KL A + +F ++F Sbjct: 215 L-DFDIEKHSAAPIRRLAPMLRDIPAARLFDEVLKLFLAGYAEYTFDLLLEHDLFAQLFP 273 >gi|260062206|ref|YP_003195286.1| putative polyA polymerase [Robiginitalea biformata HTCC2501] gi|88783768|gb|EAR14939.1| putative polyA polymerase [Robiginitalea biformata HTCC2501] Length = 486 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 78/450 (17%), Positives = 156/450 (34%), Gaps = 58/450 (12%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSK 65 + + + ++ ++GG VRD + + DIDI + + Sbjct: 7 REALDHPIFKKLSDTARELSLETYVIGGFVRDYFLGREQKKDIDIVAVGSGIALAEKLAA 66 Query: 66 --TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + ++GT + + + R + V + D RRDFT Sbjct: 67 GLPGKPRVSVFRNFGTAMVRHGELELEFVGARKESYNRDSRKPAVEDGSLEDDQKRRDFT 126 Query: 124 INALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 INAL G+++D GG++DL I+ +D LR++R RF A G Sbjct: 127 INALALSLNPEDFGRLLDPFGGMDDLEAGLIRTPLAPAETYSDDPLRMIRAIRFAAQLGF 186 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 + I+ D L A + L+I+S ERI E+NK+L + P + ++ G+ + I ++ Sbjct: 187 R-IERDSLNAIASQHERLRIVSMERIVEELNKILLTEKPSVGLGLLFKTGLLRHILPELV 245 Query: 240 EI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDKKSILSMAK----- 283 + D +E D+L LR+ L+ K K Sbjct: 246 ALQGIEEKEGQRHKDNFWHTLEVVDNISKNTDNLWLRWAALLHDIGKAPTKRFDKKVGWT 305 Query: 284 -----------------KFSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLY 320 + LP + ++S + ++ +++L + Sbjct: 306 FHSHEFVGSKMVYKIFRRLRLPLNEKMKYVRKLVMMSSRPVGLSGDDVTDSAVRRLVFDA 365 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVV 371 GD V + + A + ++ + + + P++GD ++ Sbjct: 366 GDDV-DDLMTLCEADITTKNPRKQKRYLENFGEVRQKIAEVEERDRVRNFQPPVSGDQIM 424 Query: 372 -KYGIPPGKKVGNILVHCKQEWINSSFQLS 400 + + P ++G + K+ + Sbjct: 425 AAFNLEPSPEIGRVKDAIKEAILEGEIPNE 454 >gi|68248614|ref|YP_247726.1| poly polymerase [Haemophilus influenzae 86-028NP] gi|68056813|gb|AAX87066.1| probable poly polymerase [Haemophilus influenzae 86-028NP] Length = 452 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 132/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D+ R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + +F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYSLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SAYFTEKEDSFAERMIVTALSSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|288942459|ref|YP_003444699.1| poly(A) polymerase [Allochromatium vinosum DSM 180] gi|288897831|gb|ADC63667.1| poly(A) polymerase [Allochromatium vinosum DSM 180] Length = 445 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 16/240 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L L + ++ +VGG VRD L+ +D D+AT P++V ++F R Sbjct: 32 SEQALRVLYRLRQENFQAHLVGGGVRDLLLGHEPKDFDVATDATPEQVRQVFRNCRL--- 88 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA----------KVVFTRDWKADSLRRD 121 + + + ++ T R DG A + + D+LRRD Sbjct: 89 -IGRRFRLAHVHFGRDIIEVATFRGSGSDDGEDADRQMRDGLIVRDNIYGSIEEDALRRD 147 Query: 122 FTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINALY D +IDY GG++DLR ++ IGD R ED +R+LR RF G Sbjct: 148 FTINALYYDIADFALIDYAGGIDDLRAGRLRLIGDPVKRYREDPVRMLRAVRFACKLG-F 206 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I+ + L+ + + R++ E+ KL + L + + G+F +F + Sbjct: 207 TIEPATERPLFELGHLLRDIPAARLFDELLKLFHSGYGLEVFEKLRHYGLFGHLFPATEA 266 >gi|310825989|ref|YP_003958346.1| poly(A) polymerase [Eubacterium limosum KIST612] gi|308737723|gb|ADO35383.1| poly(A) polymerase [Eubacterium limosum KIST612] Length = 415 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 95/412 (23%), Positives = 160/412 (38%), Gaps = 23/412 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + + + K + IVGGAVRD L+ + D D T LPD V F T I Sbjct: 2 EKAIETLFQVFRKHHKQLFIVGGAVRDMLLGKAPSDYDFTTDALPDEVESWFEHT----I 57 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYA 129 +GTI +I KK ++ITT R + DGR+ +V+FT D + D RRDFTIN L Sbjct: 58 TVGKHFGTIGVIMDKKVYEITTFRKEASYADGRHPDEVLFTDDVREDVSRRDFTINGLLM 117 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 D++G V DYVGGL D+RN ++ IGD R ED LR R R A ++ + + Sbjct: 118 DERGCVFDYVGGLEDIRNGMVRCIGDPKKRFEEDRLRKWRCIRLAAE--KRMELDERTRS 175 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF----LDVQEISLDQ 245 +I+ +S ERI E+ +++ + + + ++ + + D Sbjct: 176 AIRDNPDTAGVSIERIRGELTRIMLCEKVAWGGYLLIKTELLGDLLNRMVPEYWKRCEDY 235 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 L E K+ LR + + ++ + + F + + Sbjct: 236 LIDGFEIMGYLPKKLP--LRLAAFLLNMFPEERRVFLREMRYSNKEKQLAYGFCH-HVVA 292 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHY-------NNLTHQDTCFILQVLSDIIHW 358 + K+ G + L L Y Q+ ++ ++ Sbjct: 293 DSQDSVAFKEALADIGMENAEDFLAFQDGLAYWDGDPSIKRAAEQNQRVYRRIAANREPM 352 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + G D+ G G+ + L + + ++ L L + Sbjct: 353 TLRELAVNGKDLTDRGYQ-GEAIKESLTRLLKRVYEYPEENKKDRLLAWLER 403 >gi|73542462|ref|YP_296982.1| Poly(A) polymerase, PcnB [Ralstonia eutropha JMP134] gi|72119875|gb|AAZ62138.1| Poly(A) polymerase, PcnB [Ralstonia eutropha JMP134] Length = 509 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 140/340 (41%), Gaps = 59/340 (17%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 38 PTLLSRNAVKVTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQSLFRRSR 97 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLR-------SDLITDGRYAKVVFTRDWK-- 114 + + + ++ +++T R S+ + +GR K Sbjct: 98 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVASETLPEGRRLKRSELDSKTHA 153 Query: 115 -----------------ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 D+ RRDFTINA+Y D + V DY G+ D+R RT++ IGD Sbjct: 154 IDASGRVLRDNVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDP 213 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A G ID + + S R++ E+ KLL + Sbjct: 214 TLRYREDPIRMLRVVRFAAKTG-FGIDEATREPIGGLASLIHNVPSARLFDEMLKLLMSG 272 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ------------EISLDQLSQVIEAEQVFEWKIDSLL 264 + ++ + G+ K + + +++LD + ++A + + Sbjct: 273 HAWASLQELRKAGLHKGLLPLLDVALEQPMGQRFVQLALDNTDRRVQAGK----PVSPGF 328 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 F L+ + ++++ RE I+ N + Sbjct: 329 LFAALLWHH-------VLQRWNAERERGEHPIAALNIAMD 361 >gi|315224075|ref|ZP_07865915.1| polyA polymerase family protein [Capnocytophaga ochracea F0287] gi|314945808|gb|EFS97817.1| polyA polymerase family protein [Capnocytophaga ochracea F0287] Length = 469 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 87/443 (19%), Positives = 168/443 (37%), Gaps = 70/443 (15%) Query: 28 KSCIVGGAVRDSLMNLS-VQDIDIATTI----LPDRVMRIFSKTRYKVIPTSISYGTIKI 82 +S ++GG VRD L+ +DID+ + L ++V + ++GT I Sbjct: 25 ESYVIGGFVRDYLLEKKLPKDIDVVSIGSGISLAEKVAERLPNA--PKVSIFKNFGTAMI 82 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDY 138 + R + V + + D RRDFTINA+ D G++ID Sbjct: 83 KADGLDIEFVGARRESYEANSRKPYVESGTLQDDQNRRDFTINAMAFSLNRDTFGELIDP 142 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL+ + I+ D +D LR++R RF K I+ L A K+ LK Sbjct: 143 FDGLGDLKRKLIRTPLDPDITYSDDPLRMMRAIRFATQLNFK-IEKQSLKAITDNKERLK 201 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLDQLSQ 248 I+S+ERI E+NK+L + P + +Y G+ I ++ + D Sbjct: 202 IISNERIVEELNKILASPKPSIGLKLLYETGLLHYILPELIALQGVEEHDGQRHKDNFWH 261 Query: 249 VIEAEQVFEWKIDSL-LRFIVLISWQDK----------------------KSILSMAKKF 285 +E D+L LR+ L+ K K + + K+ Sbjct: 262 TLEVVDNISENTDNLWLRWAALLHDIGKAPTKRFDKKIGWTFHGHEFVGSKMVYHLFKRL 321 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEI------KKLFYLYGDKVMIAKLKIFLALHYNN 339 +P + + ++ + +I ++L + G++ + + L + Sbjct: 322 RMPLNDKMKYVQKIVKMSSRPIIIADDIVTDSAVRRLVFDAGEE-----FEDLMTLCEAD 376 Query: 340 LTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 +T ++ + + + H + P++G+++++ + +PP + VG + Sbjct: 377 ITTKNPKKFKKYHDNFQIVRQKVVEVEEKDHIRNFQPPVSGEEIMQTFNLPPSQPVGMLK 436 Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408 K+ + E + Sbjct: 437 EAIKEAILEGKIPNEYEAAKAFM 459 >gi|289665247|ref|ZP_06486828.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 455 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F Sbjct: 32 TISRKDIS-PNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ + +GR + + Sbjct: 91 RNCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIED 146 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 147 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A + I++ + L + R++ EI KL + + +++ + G+F + Sbjct: 207 AKL-DFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVSSFEGLERYGLFGAL 265 Query: 235 FLD 237 F + Sbjct: 266 FPE 268 >gi|94311846|ref|YP_585056.1| poly(A) polymerase [Cupriavidus metallidurans CH34] gi|93355698|gb|ABF09787.1| poly(A) polymerase I polynucleotide adenylyltransferase [Cupriavidus metallidurans CH34] Length = 529 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 143/341 (41%), Gaps = 59/341 (17%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + ++ IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 38 PALISRNAVKVTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSR 97 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLR-------SDLITDGRYAKVVFTRDWK-- 114 + + + ++ +++T R S+ + +GR K Sbjct: 98 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVASETLPEGRRLKRAELDSKTHA 153 Query: 115 -----------------ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 D+ RRDFTINA+Y D + V DY G+ D+R RT++ IGD Sbjct: 154 IDASGRVLRDNVWGTQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDP 213 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A G +ID + + + S R++ E+ KLL + Sbjct: 214 VTRYREDPVRMLRVVRFAAKTG-FSIDDHTREPIVGLASLIHNVPSARLFDEMLKLLMSG 272 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ------------EISLDQLSQVIEAEQVFEWKIDSLL 264 + ++ + G+ K + + +++LD + ++A + + Sbjct: 273 HAWASLQELRKAGLHKGLLPLLDVALEQPMGQRFVQLALDNTDRRVQAGK----PVSPGF 328 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 F L+ + ++++ RE I+ N +Q Sbjct: 329 LFASLLWHH-------VLQRWNKLREQGEHPIAALNTAMDQ 362 >gi|254428702|ref|ZP_05042409.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881] gi|196194871|gb|EDX89830.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881] Length = 432 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 115/243 (47%), Gaps = 19/243 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +++L L+KG ++ +VGG +RD L +D D++T P++V R+F ++R Sbjct: 15 SRAALDVLYGLHKGGFEAYLVGGCLRDILCGREPKDFDVSTNATPEQVNRLFKRSRI--- 71 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + + + ++ +++T R+ D G + + D+L Sbjct: 72 -IGRRFQIVHVRFGREVIEVSTFRAKASDDNQDQNKHHAHEETGLVLRDNTWGSIEEDAL 130 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY + + D+VG + D+ I+ IG+ R ED +R+LR RF A Sbjct: 131 RRDFTINALYYNIADFTLHDFVGSMGDIDQEVIRLIGNPEQRFREDPVRMLRAARFAAKL 190 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +I+ + L + + R++ E+ KL + + + + G+F+ +F + Sbjct: 191 G-FHIEESTARRIPDMAELLLQVPAARLFDEVLKLFLSGHARASYEQLQELGLFRFLFPE 249 Query: 238 VQE 240 Q+ Sbjct: 250 TQQ 252 >gi|254524051|ref|ZP_05136106.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14] gi|219721642|gb|EED40167.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14] Length = 461 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 152/401 (37%), Gaps = 57/401 (14%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + +VGGAVRD L+N +D D+AT P++V ++F Sbjct: 34 TISRKDIS-PNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLF 92 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ +G + + Sbjct: 93 RNCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGSIED 148 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 149 DAVRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLA 208 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G + I+ L + R++ E+ KL + + + + + G+ + Sbjct: 209 AKLGFQ-IEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVL 267 Query: 235 FLD----VQEISLDQLSQVI------EAEQVFEWKIDSLLRFIVLISWQD---------- 274 F + ++ L +++ +V + S L+ W Sbjct: 268 FPESAKALKSNRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAYCRAQATLLK 327 Query: 275 -------------------KKSILSMAKKFSLPREIRYFLISFFNCNFNQ---KTLSIPE 312 + S +++ ++FSLP + + L S F + +TL+ P Sbjct: 328 QGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQSRFGSRQRKRVFRTLTHPR 387 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 + F + + + + Q + L Sbjct: 388 FRAAFDFLSLRQVASAEHAADVEFWREAQAQSGRELESSLD 428 >gi|298244031|ref|ZP_06967838.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] gi|297557085|gb|EFH90949.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] Length = 458 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 101/456 (22%), Positives = 173/456 (37%), Gaps = 57/456 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSKTR-YKVIP 72 +I + + +VGG VRD L+ D D+AT LP+ + R+ + TR V+ Sbjct: 5 IIRLAQDFRAQHKQLYMVGGTVRDVLLQRGESADADLATDALPEEIKRLVAPTRPSAVVL 64 Query: 73 TSISYGTIKIICR-KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 +GT+++I +ITT RS+ + R +V F D D RRDFTINAL D Sbjct: 65 VGERFGTVRLIYESNNIIEITTFRSERYNPESRKPEVCFGTDLAEDLQRRDFTINALARD 124 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGD-AHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G +ID G DL I+ +G+ R ED LR+LR RF A + I+S Sbjct: 125 PLNGSIIDLFAGRQDLEEHIIRAVGNEPDKRFDEDPLRLLRAIRFAAQL-DFEIESSTWQ 183 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI------- 241 + + L+ +S ERI E+NKLL + +P + + G+ + I +V E+ Sbjct: 184 SIKRQANKLQKISRERIRDEMNKLLVSAHPAKGLDLLVEAGLMEYIMPEVMELRGVSQQP 243 Query: 242 ------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS--------------- 280 S D + V+ + + K+ + R+ L+ K S Sbjct: 244 TPRAASSKDVYAHVLRVVERTQPKLKN--RWCGLLHDIAKPRTKSVEDHKVHFFGHEDVG 301 Query: 281 ------MAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKI 331 + K+ RE + + + L D + L + Sbjct: 302 AHMARDILKRLHFDREFIDSVSRVVRLHMRANAYTIDWTDGAVRRLMLDADHDLPTLLDL 361 Query: 332 FLA---------LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP-PGKKV 381 A + + Q L + PL G+++++ PG + Sbjct: 362 SSADITSYRVDKVARATARVAELTERCQRLREEAERVPIKSPLDGNELMQLFERGPGPWL 421 Query: 382 GNILVHCKQEWINSSF-QLSQEDLHHLLRKLIASSQ 416 + + I+ + +E L ++ + + Sbjct: 422 RPLKEYLLSLVIDGALASDDKERAVSLAKEFVEREK 457 >gi|163785978|ref|ZP_02180426.1| putative polyA polymerase [Flavobacteriales bacterium ALC-1] gi|159877838|gb|EDP71894.1| putative polyA polymerase [Flavobacteriales bacterium ALC-1] Length = 474 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 92/463 (19%), Positives = 174/463 (37%), Gaps = 64/463 (13%) Query: 5 VQHKWFHDSDLINILSLLNKGED---KSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVM 60 + HK ++ NI+S + ++GG VRD L++ +DIDI + Sbjct: 1 MNHKQALKHNIFNIIS--QSAGELQVDCYVIGGFVRDYLLDRGSAKDIDIVAIGSGIELA 58 Query: 61 RIFS--KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + + + +YGT + + R + ++ VV + D Sbjct: 59 KQVAINLPNNPKVQIFKTYGTAMLRHDDIEIEFVGARKESYSEDSRNPVVENGTLQDDQN 118 Query: 119 RRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINAL + G+++D G+NDL I+ + +D LR++R RF Sbjct: 119 RRDFTINALALCLNKENFGELLDPFNGINDLDKGIIRTPLNPDITYSDDPLRMMRAIRFA 178 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 NI+S L A K ++I++ ERI E+NK+LE+K P + + G+ I Sbjct: 179 TQLN-FNIESASLKAITDNKDRIQIITKERIVVELNKILESKTPSIGFILLEKTGLLDYI 237 Query: 235 FLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDK-------- 275 ++ + D +E D+L LR+ L+ K Sbjct: 238 LPELTALKGIDEIEGQRHKDNFYHTLEVVDNIAKTTDNLWLRWAALLHDIGKAPTKKFHK 297 Query: 276 --------------KSILSMAKKFSLPREIRYFLISFF-----NCNFNQKTLSIPEIKKL 316 K + + K+ +P + + ++ +++L Sbjct: 298 KIGWTFHAHEFIGSKMVYKLFKRLKMPLNDKMKFVQKMVFMSSRPIVLASDVTDSAVRRL 357 Query: 317 FYLYGDKVMIAKLKIFLAL----------HYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + GD + + + A Y+N I++V + + P+T Sbjct: 358 VFDAGD-YVDDLMTLCEADITTKNPKKFKKYHNNFKVVRDKIIEV-EERDQVRNFQPPVT 415 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G++++K + + P +++G I K+ + E L+ Sbjct: 416 GEEIMKAFNLKPSREIGIIKEAIKEAILEGDIPNEHEAAFQLM 458 >gi|116327797|ref|YP_797517.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331544|ref|YP_801262.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120541|gb|ABJ78584.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125233|gb|ABJ76504.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 489 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 119/243 (48%), Gaps = 19/243 (7%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ Sbjct: 35 RKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNC 94 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-----------KA 115 R + + I+ R K +++T RS + D R K V +D+ + Sbjct: 95 RI----IGRRFKIVHILFRGKVIEVSTFRS--LPDYRLGKAVEDQDYLIKRDNKFGTPQE 148 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F Sbjct: 149 DAARRDFTINSLYYDVRNDSIIDYVGGFEDIRNKILRVIGDPDISFREDPVRMLRAVKFA 208 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 G +++ A K K L+ SS R+ E NK+ M G+ + + Sbjct: 209 EILG-LDVEKTTSKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVL 267 Query: 235 FLD 237 F + Sbjct: 268 FKE 270 >gi|253689770|ref|YP_003018960.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259585846|sp|C6DDL7|CCA_PECCP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|251756348|gb|ACT14424.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 414 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 142/345 (41%), Gaps = 34/345 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+ L V + D + P+ ++ + K P + + Sbjct: 2 KIYLVGGAVRDSLLGLPVTEKDWVVVGATPEDLLAQGYQQVGKDFPVFLHP-----VSHD 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G + D LRRD TINA+ +QG +ID G DL Sbjct: 57 EYALARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTEQGDLIDPYHGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 N ++ + DA ED LR+LR RF A + ++ L+ + + L L+ Sbjct: 117 ENHVLRHVSDA---FSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAYLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L +P + + G +F ++ + + A + +ID Sbjct: 174 PERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEIDNLY------GVPAPAKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ ++MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 228 TGIHTMM---------TVAMAARLSPEIDVRFATL----CHDLGKGLTPPELWPRHHGHG 274 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + L N +D ++ D+IH + L P T Sbjct: 275 PAGVKLVEALCQRLRVPN-PIRDLAKLVAEYHDLIHTVQVLQPKT 318 >gi|317014060|gb|ADU81496.1| polynucleotide adenylyltransferase [Helicobacter pylori Gambia94/24] Length = 404 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 101/400 (25%), Positives = 162/400 (40%), Gaps = 22/400 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EEGLKELFDIYEKSPYELYLVGGCVRDYLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRMEKGHIKHRKPKELVFSARLMDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G + + N+TI+ +G+A R ED LRILR RF A G K I + A Sbjct: 125 SPTKGLIDPFKGRSAIENQTIECVGEARLRFFEDALRILRALRFSATLGFK-IAASTKRA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYKVAKE------YQEILELVIQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 A E LR + Q + P++ C+ + Sbjct: 238 KNAPLNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFSKAKECHKAFFNIH 285 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 K D F AL + + ++ +KK L G Sbjct: 286 SKTGLKFLLKNYDLEPFNLALDFYALENPKHALKIKGLLKEIFDSNEPFKKEHLALKGGA 345 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + + E L ++ Sbjct: 346 LQSLGYQHQK-IGEILNACLNSVIENPKNNALEWLIEWVK 384 >gi|146302633|ref|YP_001197224.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacterium johnsoniae UW101] gi|146157051|gb|ABQ07905.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacterium johnsoniae UW101] Length = 495 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 87/448 (19%), Positives = 163/448 (36%), Gaps = 64/448 (14%) Query: 17 NILSLLNKGEDK----SCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVM----RIFSKTR 67 I +++K + S ++GG VRD L+N + DID+ + + Sbjct: 32 KIFDVISKASQELKVDSYVIGGFVRDLLLNRGSKKDIDVVAVGSGIELALKVSDLLPNK- 90 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + +YGT + + R + T +V + D RRDFTINAL Sbjct: 91 -PKVQVFKTYGTAMLRFEDTDIEFVGARKESYTRDSRNPIVENGTLQDDQNRRDFTINAL 149 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G ++D GL DL N+TIK D +D LR+LR RF I+ Sbjct: 150 ALSLNSTNFGDLLDPFDGLTDLENKTIKTPLDPDITYSDDPLRMLRAIRFATQLN-FEIE 208 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + L A K +KI+S ERI E+NK+L P + + +Y G+ I ++ ++ Sbjct: 209 ENSLNAITKNADRIKIISGERIVDELNKILSTPKPSSGFLLLYKTGLLDLILPELTALNQ 268 Query: 244 DQLSQVIEAEQVFEWKI-----------DSLLRFIVLISWQDKKSILSMAKKF------- 285 + + + F + D LR+ L+ K KK Sbjct: 269 VEEIEGHTHKNNFYHTLEVVDNICPNTDDVWLRWSALLHDIGKAPTKRFTKKQGWTFHGH 328 Query: 286 -----SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI--------- 331 + ++I L N + + L D V + ++ Sbjct: 329 EFLGGKMAKKIFERLHMPLNHKMKFVQKMVIMSSRPIVLAQDIVTDSAVRRLVFDAGEDV 388 Query: 332 --FLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGI 375 + L ++T ++ + + + H + P++G+++++ + + Sbjct: 389 ENLMTLCEADITTKNPSKFKKYHKNFEIVRKKIVEVEERDHVRNFQPPISGEEIMEIFDL 448 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQED 403 P +++G + K+ + + Sbjct: 449 KPSREIGILKEAVKEAILEGDIPNEYQA 476 >gi|271501860|ref|YP_003334886.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya dadantii Ech586] gi|270345415|gb|ACZ78180.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya dadantii Ech586] Length = 416 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ V + D + P+ ++ + + P + T + Sbjct: 2 KIYLVGGAVRDGLLGRPVTERDWVVVGATPEMLLAQGYQQVGRDFPVFLHPQTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + + D LRRD TINA+ ++ G++ID GG Sbjct: 57 ---EYALARTERKSGNGYTGFICQATPNITLEEDLLRRDLTINAIAQEESGQLIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y I + L+ ++ L Sbjct: 114 RDLQNRLLRHVSQA---FSEDPLRVLRVARFAARYAHLGFQIAEETLHLMQTMTRNGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L ++P + + G +F ++ D+L V Q + Sbjct: 171 FLTPERVWKETEKALGTQDPQVYFQVLRDCGALAVLFPEI-----DRLYGVPAPAQ-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA + S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHVMM---------SLAMAARLSPALDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + + L N C + + D+IH + L P T Sbjct: 272 GHGVAGVPLVEALCQRLRVPNALRDLACLVTEYH-DLIHTVQILQPKT 318 >gi|217034768|ref|ZP_03440166.1| hypothetical protein HP9810_861g10 [Helicobacter pylori 98-10] gi|216942712|gb|EEC22273.1| hypothetical protein HP9810_861g10 [Helicobacter pylori 98-10] Length = 407 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 169/401 (42%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG +RD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPHELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFSATLGFKIVLS-TKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NK L KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKFLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKHALKIKSLLKEISNANEPFKKEHLALKGS 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G +++G IL C I S E L ++ Sbjct: 345 TLQNLGYQR-QQIGEILNACLNLVIAHPKNNSLEWLIKWVK 384 >gi|123443861|ref|YP_001007832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166233891|sp|A1JQW2|CCA_YERE8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|122090822|emb|CAL13704.1| tRNA nucleotidyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 414 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 80/362 (22%), Positives = 153/362 (42%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRDSL+NL V + D + P++++ + K P + T + Sbjct: 2 KTYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVFLHPVTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ +G++ D G Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + DA ED LR+LR RF A + ++ L+A++ L Sbjct: 114 QDIEKRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L+ ++P + + G +F +++ + + A + + Sbjct: 171 ALTPERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIECLF------GVPAPEKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+M + S ++R+ + C+ K L+ E + Sbjct: 225 EIDTGIHTLM---------TLAMTAQLSPEVDVRFAAL----CHDLGKGLTPKEFWPHHH 271 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L Y++L H +L++ I W+K Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRK 331 Query: 361 PL 362 P Sbjct: 332 PE 333 >gi|288933518|ref|YP_003437577.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Klebsiella variicola At-22] gi|290511423|ref|ZP_06550792.1| tRNA nucleotidyltransferase [Klebsiella sp. 1_1_55] gi|288888247|gb|ADC56565.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Klebsiella variicola At-22] gi|289776416|gb|EFD84415.1| tRNA nucleotidyltransferase [Klebsiella sp. 1_1_55] Length = 413 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + + Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQSRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD LRRD T+NAL D G +ID GG Sbjct: 57 ---EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGTIIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDLR R ++ + A ED LR+LR RF A Y ++ L+ ++ L Sbjct: 114 NDLRLRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMHAMVEAGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + K +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ L ++ ++MA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGLHTLM---------TVTMAAMLSPDVDVRFATL----CHDLGKGLTPKALWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + +I L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQICARLRVPN-DIRDLAKLVAEYHDLIHTLPILQPKT 318 >gi|206580700|ref|YP_002236534.1| multifunctional CCA protein [Klebsiella pneumoniae 342] gi|226702067|sp|B5XU35|CCA_KLEP3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|206569758|gb|ACI11534.1| multifunctional CCA protein [Klebsiella pneumoniae 342] Length = 413 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ L V+D D + P +++ + + P + + + Sbjct: 2 KSYLVGGAVRDALLGLPVKDRDWVVVGATPQQMLDAGYQQVGRDFPVFLHPQSRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +AD LRRD T+NAL D G +ID GG Sbjct: 57 ---EYALARTERKSGAGYTGFTCYAAPDVTLEADLLRRDLTVNALAQDADGTIIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDLR R ++ + A ED LR+LR RF A Y ++ L+ ++ L Sbjct: 114 NDLRLRLLRHVSPA---FSEDPLRVLRVARFAARYAHLGFRIAEETQALMHAMVEAGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + K +F ++ + + A + Sbjct: 171 HLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDALY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ L ++ ++MA S ++R+ + C+ K L+ + + Sbjct: 225 EIDTGLHTLM---------TVTMAAMLSPDVDVRFATL----CHDLGKGLTPKALWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGPAGVKLVEQLCARLRVPN-DIRDLAKLVAEYHDLIHTLPILQPKT 318 >gi|258511621|ref|YP_003185055.1| tRNA cytidylyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478347|gb|ACV58666.1| tRNA cytidylyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 407 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 85/407 (20%), Positives = 167/407 (41%), Gaps = 19/407 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ +L + +VGGAVRD L+ + D+D+AT+ P+ V +F++T + T Sbjct: 7 AREVMEVLQNAGYAAYLVGGAVRDLLLGRTPSDLDVATSARPEDVRSLFART----LDTG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQ 132 I +GT+ + + ++TT R++ DGR V F D +AD RRDFTINA+ D Sbjct: 63 IRHGTVSVWSAGCWIEVTTFRAEGPYGDGRRPDFVRFVDDVEADLARRDFTINAMALDLD 122 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 G+++D G DL R ++ +GD R ED LR++R RF + D A + Sbjct: 123 GRLVDPFDGRGDLARRLLRAVGDPVARFREDGLRLVRAVRFSVQL-DLTCDPATEAALAE 181 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 ++ ++ ERI E+ +L A + + + +++ + L+Q + + Sbjct: 182 TADAIRPIALERIGRELVRLSHAP-WHAHLQTLASTPLWRRRGEPLA--WLEQGFPWLAS 238 Query: 253 EQVFEWKIDSLLRFIVL---ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + F + + L A+ + ++ + Sbjct: 239 QGRFSLAPPAGWPSVALWFVGVDNGPLRARRFAEALAYGKDAARRIERAVQLAQAWARGV 298 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 ++ Y G ++ L ++ + + + W + L DD Sbjct: 299 DAASPEMLYEAGRASAEMAARMISFLARGDVF--EVARWKRAIRAQPLWDRSDLALPADD 356 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ G+ GK++G ++ + Q + L R+++A + Sbjct: 357 LIAMGLR-GKEIGECQKSLVRQILRGEIQNQPDALR---REVMARRK 399 >gi|194365293|ref|YP_002027903.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3] gi|194348097|gb|ACF51220.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3] Length = 461 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 81/405 (20%), Positives = 155/405 (38%), Gaps = 57/405 (14%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + +VGGAVRD L+N +D D+AT P++V ++F Sbjct: 34 TISRKDIS-PNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLF 92 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ +G + + Sbjct: 93 RNCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIED 148 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 149 DAIRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLA 208 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G + I+ + L + R++ E+ KL + + + + + G+ + Sbjct: 209 AKLGFQ-IEEGTAAPIPQLASLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVL 267 Query: 235 FLD----VQEISLDQLSQVI------EAEQVFEWKIDSLLRFIVLISWQD---------- 274 F + ++ L +++ +V + S L+ W Sbjct: 268 FPESAKALKSNRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAYCRAQATLLK 327 Query: 275 -------------------KKSILSMAKKFSLPREIRYFLISFFNCNFNQ---KTLSIPE 312 + S +++ ++FSLP + + L S F + +TL+ P Sbjct: 328 QGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQSRFGSRQRKRVFRTLTHPR 387 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + F + + + + Q + L + H Sbjct: 388 FRAAFDFLALRQVASAEHEADVAFWREAQAQSGHELESSLDSLHH 432 >gi|285017990|ref|YP_003375701.1| poly(a) polymerase [Xanthomonas albilineans GPE PC73] gi|283473208|emb|CBA15713.1| probable poly(a) polymerase protein [Xanthomonas albilineans] Length = 481 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT P++V ++F Sbjct: 47 TISRKDIS-PNALRVLYRLREAGFGAYLVGGAVRDLLVQWQPKDFDVATDATPEQVKQLF 105 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R+++ + +GR + + Sbjct: 106 RNCRL----IGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGSIED 161 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+LRRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 162 DALRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLA 221 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G ID+ + L + R++ E+ KL + + + + + G+ + Sbjct: 222 AKLG-FQIDAGTAEPIPRLAGLLAEAAPARLFEEVLKLFLSGHGVASFEGLERHGLLAAL 280 Query: 235 FLD 237 F + Sbjct: 281 FPE 283 >gi|332162994|ref|YP_004299571.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667224|gb|ADZ43868.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862251|emb|CBX72412.1| multifunctional CCA protein [Yersinia enterocolitica W22703] Length = 412 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 80/362 (22%), Positives = 153/362 (42%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL + + D + P++++ + K P + T + Sbjct: 2 KIYLVGGAVRDSLLNLPITEQDWVVVGATPEQLLAQGYQQVGKDFPVFLHPVTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ +G++ D G Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + DA ED LR+LR RF A + ++ L+A++ L Sbjct: 114 QDIEKRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L+ ++P + + G +F +++ + + A + + Sbjct: 171 ALTPERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERLF------GVPAPEKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA + S ++R+ + C+ K L+ E + Sbjct: 225 EIDTGIHTLM---------TLAMAAQLSPEVDVRFAAL----CHDLGKGLTPKEFWPHHH 271 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L Y++L H +L++ I W+K Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRK 331 Query: 361 PL 362 P Sbjct: 332 PE 333 >gi|146313095|ref|YP_001178169.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Enterobacter sp. 638] gi|167006457|sp|A4WEI8|CCA_ENT38 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|145319971|gb|ABP62118.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Enterobacter sp. 638] Length = 413 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + P+ ++ + + P + T + Sbjct: 2 KIYLVGGAVRDALLGLPVKDKDWVVVGATPEEMLNAGYQQVGRDFPVFLHPKTRE----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINAL D +G +ID GG Sbjct: 57 ---EYALARTERKAGLGYTGFTCYAAPDVTLEQDLLRRDLTINALAQDDEGHIIDAYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + A ED LR+LR RF A Y + ++ L+ ++ A L+ Sbjct: 114 RDLQNRLLRHVSPA---FSEDPLRVLRVARFAARYAHLSFRIADETLALMTAMTAAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L +NP + + G K +F ++ + + A + Sbjct: 171 HLTPERVWKETENALTTRNPQVFFQVLRDCGALKVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ LSMA S ++R+ + C+ K L+ E + Sbjct: 225 EIDTGIHTLM---------TLSMAAMLSPEVDVRFATL----CHDLGKGLTPKEFWPRHH 271 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L +++L H I+++ +I W+K Sbjct: 272 GHGPAGVKLVEGICQRLRVPNDIRDLAKLVAEFHDLIHTFPILKPATIVKLFDNIDAWRK 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|331006253|ref|ZP_08329573.1| Poly(A) polymerase [gamma proteobacterium IMCC1989] gi|330419942|gb|EGG94288.1| Poly(A) polymerase [gamma proteobacterium IMCC1989] Length = 439 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 14/234 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++ L + ++ +VGG++RD L+ +D D++T P+ V ++F R Sbjct: 24 SPSATRVIDGLVQAGFQAYLVGGSIRDGLLGCQPKDFDVSTDATPEEVKKVFRNARI--- 80 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD--------GRYAKVVFTRDWKADSLRRDFT 123 + + + ++ ++TT R G+ + + +D++RRDFT Sbjct: 81 -IGRRFRIVHVRFGREIIEVTTFRGKSSDSSHQVESNTGQLLRDNVYGNMHSDAIRRDFT 139 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 +NALY G V DY G++D++ R ++ IGD R ED +R+LR RF A G I Sbjct: 140 VNALYYSPENGSVYDYTNGVDDIKKRQLRIIGDPLTRYKEDPVRLLRAIRFSAKLG-FTI 198 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + L + R++ EI KL + + + + + +F Sbjct: 199 EEKTANPIFDNGHLLTHVPPARLFDEILKLFLNGSATASYTLLKDYQLLDALFP 252 >gi|37527827|ref|NP_931172.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Photorhabdus luminescens subsp. laumondii TTO1] gi|73619817|sp|Q7MAZ9|CCA_PHOLL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|36787263|emb|CAE16344.1| tRNA nucleotidyltransferase (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 416 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 80/362 (22%), Positives = 154/362 (42%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+N V++ D + + ++ + + K P + T + Sbjct: 2 RVYLVGGAVRDRLLNFPVKERDWVVVGGTSEALLSLGYQQVGKDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + G + D RRD T+NA+ G+++D G+ Sbjct: 57 ---EYALARTERKSGLGYTGFTCYAAPDVTLEDDLQRRDLTVNAIAQTPTGELVDPYHGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL NR ++ + DA ED LR+LR RF A + ++ L++++ L Sbjct: 114 DDLNNRILRHVSDA---FSEDPLRVLRVARFAARFAHLGFTIASETQALMSNMAINGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +L+ ER+W E K L + +P + + G +F ++ D L V E+ + Sbjct: 171 VLTPERVWKETEKALASPSPQVFFQVLRDCGALAVLFPEI-----DNLFGVPAPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L +A + + + R+ + C+ K L+ PE Y Sbjct: 225 EIDTGIHTLM---------VLKVATELTDEVDSRFAAL----CHDLGKGLTPPEQWPHHY 271 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQDTCF----ILQVLSDIIHWKK 360 +G + +L++ LA Y++L H T +L++ + W+K Sbjct: 272 GHGPAGVKLVDQLCQRLRVPNSARDLAKLAAQYHDLVHTVTQLRPKTLLKLFDAVDAWRK 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|226946294|ref|YP_002801367.1| polynucleotide adenylyltransferase PcnB [Azotobacter vinelandii DJ] gi|226721221|gb|ACO80392.1| polynucleotide adenylyltransferase; PcnB [Azotobacter vinelandii DJ] Length = 463 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 31/299 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L ++ +VGG VRD L+++ +D D+AT+ P++V F R Sbjct: 38 SRHAVSVVERLQNAGYQAYVVGGCVRDLLLDIEPKDFDVATSATPEQVRAEFRNARV--- 94 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD---------------LITDGRYAKVVFTRDWKAD 116 + + ++ ++ T R+ GR + + D Sbjct: 95 -IGRRFKLAHVHFGREIIEVATFRAHHPDDEEDDEDNHLAMRHESGRILRDNVYGTLEED 153 Query: 117 SLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINALY D +++DY G++D+RN ++ IGD R LED +R+LR RF A Sbjct: 154 AQRRDFTINALYFDIAHDRILDYAHGVHDIRNHLVRLIGDPEQRYLEDPVRMLRAVRFAA 213 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + +I+ + L+ + + R++ E+ KL + + + +F +F Sbjct: 214 KL-DFDIEHHSAAPIRRLAPLLRDIPAPRLFDEVLKLFLSGYAEDTFELLLEYDLFAPLF 272 Query: 236 LDVQEI---------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD-KKSILSMAKK 284 L + + E++ + K + + W L + K+ Sbjct: 273 PATAAALERNPDYVGRLVRHALANTDERIAQGKPVTPAFLFAALLWPALPSRALELQKR 331 >gi|304387847|ref|ZP_07370021.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091] gi|304338112|gb|EFM04248.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091] Length = 502 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 65 AENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 120 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 121 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 180 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R + G + + Sbjct: 181 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLG-FELSEETAAP 239 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 240 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 293 >gi|282599943|ref|ZP_05972449.2| hypothetical protein PROVRUST_06072 [Providencia rustigianii DSM 4541] gi|282567252|gb|EFB72787.1| multifunctional CCA protein [Providencia rustigianii DSM 4541] Length = 419 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 84/366 (22%), Positives = 154/366 (42%), Gaps = 57/366 (15%) Query: 24 KGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 K K +VGGAVRD L+ L + D D + P+ ++ + K P + T + Sbjct: 6 KTYMKIYLVGGAVRDKLLGLPISDRDYVVVGTTPEAMLAKGFQQVGKDFPVFLHPKTHE- 64 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDY 138 + R++ Y + D LRRD TINA+ G++ID Sbjct: 65 -------EYALARTERKIGAGYTGFSCYSAPDVTIEDDLLRRDLTINAIAQSDTGELIDP 117 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEK-NIDSDGLVASIKAK 194 G+ DL+NR ++ + DA LED LR+LR RF A Y G + ++ L+ S+ Sbjct: 118 YHGVKDLKNRVLRHVSDA---FLEDPLRVLRVARFAARYYQQGFRVAPETMTLMQSMVET 174 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L L+ ER+W E +K + + +P + + G +F ++ + + A + Sbjct: 175 GELSHLTPERVWVETHKAIMSHSPQVYFEVLRDCGALAVLFPEIDHLF------GVPAPE 228 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 + +ID+ + ++++ + S ++R+ + C+ K L+ E+ Sbjct: 229 KWHPEIDTGIHILMVMG---------VIATLSNDIDVRFAAL----CHDLGKALTPKELW 275 Query: 315 KLFYLYGD------KVMIAKLKI--------FLALHYNNLTH----QDTCFILQVLSDII 356 +G+ + + +LKI LA Y++ H + I+Q+ + Sbjct: 276 PSHPNHGEAGIPLIEALCERLKIPTSARDLARLAARYHDKIHVIGKLNAQEIVQIFDGLD 335 Query: 357 HWKKPL 362 W+KP Sbjct: 336 SWRKPE 341 >gi|218289185|ref|ZP_03493421.1| Polynucleotide adenylyltransferase region [Alicyclobacillus acidocaldarius LAA1] gi|218240768|gb|EED07947.1| Polynucleotide adenylyltransferase region [Alicyclobacillus acidocaldarius LAA1] Length = 407 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 86/413 (20%), Positives = 167/413 (40%), Gaps = 19/413 (4%) Query: 9 WFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 + ++ +L + +VGGAVRD L+ L+ D+D+AT+ P+ V +F++T Sbjct: 1 MLIPAPAREVMEVLRSAGYAAYLVGGAVRDLLLGLTPSDLDVATSARPEDVKSLFART-- 58 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINA 126 I T I +GT+ + + ++TT R++ DGR V F D +AD RRDFT+NA Sbjct: 59 --IDTGIRHGTVSVQSAGCWIEVTTFRAEGPYGDGRRPDFVRFVDDVEADLARRDFTMNA 116 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + D G++ID G DL R ++ +GD R ED LR+LR RF + D Sbjct: 117 MALDLDGRLIDPFDGRGDLSRRLLRAVGDPVARFREDGLRLLRAVRFAVQF-HLTCDPAT 175 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 A + ++ ++ ERI E+ +L A + + + +++ + L+Q Sbjct: 176 EAALAETADAIRPIALERIGRELERLSHAP-WHAHLDWLASTPLWRRKGEPLA--WLEQG 232 Query: 247 SQVIEAEQVFEWKIDSLLRFIVL---ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 + ++ F + + L A+ + ++ + Sbjct: 233 FSWLASQGRFSLAPPAGWPSVALWFVGVDDGPLRARRFAEALAYGKDAALRIERAVQLGQ 292 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 ++ Y G + L ++ + + + W++ Sbjct: 293 AWARGMNAASPEMLYEAGRASAEMAAAMISFLSRGDVF--EMARWKRAIRAQPLWERSHL 350 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 L D++ G+ GK++G + + + + L R+++A + Sbjct: 351 ALPAGDLLAMGLR-GKEIGECQKSLVRRILRGEIENQPDALR---REVMARRK 399 >gi|166711861|ref|ZP_02243068.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 455 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F Sbjct: 32 TISRKDIS-PNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ + +GR + + Sbjct: 91 RNCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIED 146 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 147 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + I++ + L + R++ EI KL + + + + + G+F + Sbjct: 207 SKLN-FEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLFGAL 265 Query: 235 FLD 237 F + Sbjct: 266 FPE 268 >gi|87127876|gb|ABD22390.1| polyA polymerase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202749|gb|ABD30559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 366 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 154/383 (40%), Gaps = 28/383 (7%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-I 99 M ++ DIDI T+ PD + IFS T IP +GTI ++ + +++TT R++ Sbjct: 1 MGRNIHDIDITTSATPDEIESIFSHT----IPVGKEHGTINVVFNDENYEVTTFRAEEDY 56 Query: 100 TDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158 D R V F RD D RRDFT+NA+ D K+ DY G D+ NR I+ +G A Sbjct: 57 VDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRIIRTVGIAEE 116 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED LR++R RF + +I ++ A +K LS ERI E+ KL+ N Sbjct: 117 RFQEDALRMIRCLRFQSQL-SFDIATETFEAMRIQMADIKFLSIERIVIELTKLMRGINV 175 Query: 219 LNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK-S 277 + H+ + F + + + ++Q++ + +LI+ K Sbjct: 176 EKSFNHLKSLKAFNYM-PYFEHLDMNQINVTEAID------------LELLIAIVSVKFD 222 Query: 278 ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF-YLYGDKVMIAKLKIFLALH 336 I K L + + ++ E K+F Y Y ++ + L Sbjct: 223 INYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDTHLIKNVMVAADVLK 282 Query: 337 YNNLTHQDTCFI------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQ 390 N++ + + + +H +K + G + G + ++L + Sbjct: 283 ANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMMVNGGVLMAHLNAKSGPWLKDVLRQIEI 342 Query: 391 EWINSSFQLSQEDLHHLLRKLIA 413 + + ++ + + Sbjct: 343 AIVTGKVSNEETEILKWVDNHVK 365 >gi|251788433|ref|YP_003003154.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya zeae Ech1591] gi|247537054|gb|ACT05675.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Dickeya zeae Ech1591] Length = 415 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 78/337 (23%), Positives = 137/337 (40%), Gaps = 39/337 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ V + D + P+ +++ + + P + T + Sbjct: 2 KIYLVGGAVRDGLLGRPVTERDWVVVGATPEMLLQQGYQQVGRDFPVFLHPQTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ D+ G++ID GG Sbjct: 57 ---EYALARTERKSGNGYTGFTCQATPDITLEDDLQRRDLTINAIAQDEDGQLIDPYGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAK--KGLK 198 DL+NR ++ + +A ED LR+LR RF A Y I + L L Sbjct: 114 RDLQNRLLRHVSEA---FSEDPLRVLRVARFAARYAHLGFQIAEETLHLMQAMARDGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L+ +NP + + G +F +V + + A + Sbjct: 171 FLTPERVWKETEKALDTQNPQVYFQVLRDCGALAILFPEVDRLY------GVPAPATWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA + S ++R+ + C+ K L+ PE+ + Sbjct: 225 EIDTGIHTMM---------SLAMAARLSPALDVRFATL----CHDLGKGLTPPELWPRHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 +G + + L N C + + I Sbjct: 272 GHGAAGVPLVEALCQRLRVPNALRDLACLVAEYHDLI 308 >gi|255021401|ref|ZP_05293449.1| Poly(A) polymerase [Acidithiobacillus caldus ATCC 51756] gi|254969264|gb|EET26778.1| Poly(A) polymerase [Acidithiobacillus caldus ATCC 51756] Length = 499 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 134/303 (44%), Gaps = 31/303 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 S + +L+ L++ ++ +VGG+VRD L+ +D D+AT P++V ++F + + Sbjct: 53 SSGALQVLNTLHQAGHQAYLVGGSVRDLLLGREPKDYDVATDARPEQVRKLFRRNARLI- 111 Query: 72 PTSISYGTIKIICRKKYFDITTLR---------SDLITDGRYAKVVFTRDWKADSLRRDF 122 + + + + ++ T R S+ GR + D+ RRDF Sbjct: 112 --GRRFILVHVQFGPEIVEVATFRGQGESAEETSERSASGRILADNVYGSLEEDAGRRDF 169 Query: 123 TINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T NALY + + ++D+ GL DL+ ++ IGD R ED +R+LR RF A G + Sbjct: 170 TANALYYNIADRSILDFADGLTDLQAGRLRMIGDPEQRYREDPVRMLRAVRFAAKLGFQ- 228 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D+ A + L + S R++ E KL + ++ + G+F +F Sbjct: 229 MDAAVEAAIAPCRDLLLEVPSARLFEETIKLFLTGHAQSSFDLLRRTGLFAALFPQ---- 284 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFI-------VLISWQDKKSILSMAKKFSLPREIRYF 294 LD++ +AE E LLR VL+ + L A +S + R Sbjct: 285 -LDRVLDAADAESARE-----LLRLALEGTDQRVLLGKSVTPAFLFAALLWSALQAQRQH 338 Query: 295 LIS 297 L + Sbjct: 339 LEA 341 >gi|238650332|ref|YP_002916184.1| poly(A) polymerase [Rickettsia peacockii str. Rustic] gi|238624430|gb|ACR47136.1| poly(A) polymerase [Rickettsia peacockii str. Rustic] Length = 408 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 120/415 (28%), Positives = 189/415 (45%), Gaps = 79/415 (19%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLM----NLSVQ-------------------------- 46 ILSLL++ ++ ++GG VRD+L+ N + + Sbjct: 17 KILSLLSEKG-QARLIGGCVRDALLDLLHNKTNKEEFEGDMERRIAMYINVREDSSTGST 75 Query: 47 -------------------DIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 DIDIAT + P V I S + K IPT + +GTI + Sbjct: 76 YKLPLEASYPRDRLEKGSRDIDIATNLTPSEVTNILSGAKIKTIPTGLKFGTITATLNNE 135 Query: 88 YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLR 146 F+ITTLR D+ +GR+AKV+FT D+ D+ RRDFTINAL + ++ DY G DL+ Sbjct: 136 KFEITTLRKDIECNGRHAKVIFTNDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLQ 195 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIW 206 + FIG+A RI EDYLRILRFFRF ++Y + +D A K GLK LS ERI Sbjct: 196 QEKVVFIGEALDRIKEDYLRILRFFRFSSYYANQ-LDDGSFKACKALKDGLKTLSRERIK 254 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRF 266 SE++K++ +K + M+ GI + IF +Q + EQ ++K++ + R+ Sbjct: 255 SEMDKIIVSKRAAQILKAMFEIGILELIF-SIQNYEIKFF------EQANDFKLELVTRY 307 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFN----CNFNQKTLSIPEIKKLFYLYGD 322 +L+ Q + L + + + ++S N FN K + + YL Sbjct: 308 ALLLYCQKDLN-LKVFLDWKFSKHEAMQILSITNFLNDAKFNMKKIWFEKKNYKEYLLAA 366 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 +++ L H + ++ +P F + G+D++ I Sbjct: 367 RII------------GKLNHSQVKEFILKYDALL---RPKFQVNGNDLLNMNIEK 406 >gi|207721701|ref|YP_002252140.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum MolK2] gi|206586863|emb|CAQ17448.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum MolK2] Length = 516 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSR 122 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDP 238 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 H R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + Sbjct: 239 HTRYREDPVRMLRAVRFAAKTG-FDIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + + +++L+Q Sbjct: 298 HAWASLQELRKAGLHRGLLP-LLDVALEQ 325 >gi|222616187|gb|EEE52319.1| hypothetical protein OsJ_34338 [Oryza sativa Japonica Group] Length = 459 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + +VGGAVRD L+N +D D+AT P++V ++F Sbjct: 34 TISRKDIS-PNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLF 92 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLI--------TDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ +G + + Sbjct: 93 RNCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIED 148 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 149 DAIRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLA 208 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G + I+ L + R++ E+ KL + + + + + G+ + Sbjct: 209 AKLGFQ-IEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVL 267 Query: 235 FLD 237 F + Sbjct: 268 FPE 270 >gi|270340141|ref|ZP_06007176.2| polyA polymerase [Prevotella bergensis DSM 17361] gi|270332525|gb|EFA43311.1| polyA polymerase [Prevotella bergensis DSM 17361] Length = 509 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 81/499 (16%), Positives = 178/499 (35%), Gaps = 97/499 (19%) Query: 8 KWFHDSDLINILS--LLNKGED-------KSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58 + + DL +L + +K D + +VGG VRD + DID+ Sbjct: 4 RQLSNDDLARLLDKDIFHKIGDAADSLSMECYVVGGYVRDLFLQRPSDDIDVVVVGSGIE 63 Query: 59 VMRIFSKTRYKVIP--TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116 V + ++GT ++ R + R + + V + D Sbjct: 64 VATKLRQLLGGKAHLTVFRNFGTAQVKFRGIEVEFVGARKESYSHDSRKPHVEDGTLEDD 123 Query: 117 SLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRDFTINA+ ++ G+++D GL D+ + I+ D +D LR++R R Sbjct: 124 QNRRDFTINAMAVCLNRERFGELVDPFDGLADMEDGIIRTPLDPDITFSDDPLRMMRCVR 183 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + I+ + A + + +KI+S ERI +E+NK++ + P V + G+ Sbjct: 184 FATQL-KFYIEDETFEALERNAERIKIISGERINTELNKIMLSDQPSRGFVDLQRCGLLA 242 Query: 233 EIFLDVQEI-----------------SLDQLSQVIEAEQ---------VFEWKIDS---- 262 I ++ + +L+ + + +A+Q + + DS Sbjct: 243 LILPELTALDVVETKNGRAHKNNFYHTLEVVDNLCQAQQQRMERINKELAQHAPDSKEAQ 302 Query: 263 --------------LLRFIVLISWQDKKSILS----------------------MAKKFS 286 LR+ L+ K + ++ Sbjct: 303 DLQADLEHLQANQLWLRWGTLLHDVGKTKTKRWDHAAGWTFHNHNYVGSKMVPGIFRRLK 362 Query: 287 LPREIR-YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT 345 LP + + ++ + + ++ ++ + + L ++T ++ Sbjct: 363 LPMDAKMKYVQKLVDLHMRPIAIADEDVTDSAVRRLVNDAGNDVDDLMMLCEADITSKNR 422 Query: 346 ----------CFILQVLSDIIHW---KKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQE 391 + + ++D+ ++ + G+++++ + P ++VG + K Sbjct: 423 VKKQRFLENFRLVREKIADLRKKDFVRELQPCIDGNEIMQMFNLKPSREVGILKQTLKNA 482 Query: 392 WINSSFQLSQEDLHHLLRK 410 +++ +E L LL K Sbjct: 483 VLDNVVPNEREPLMQLLTK 501 >gi|222054332|ref|YP_002536694.1| poly(A) polymerase [Geobacter sp. FRC-32] gi|221563621|gb|ACM19593.1| poly(A) polymerase [Geobacter sp. FRC-32] Length = 451 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 80/403 (19%), Positives = 151/403 (37%), Gaps = 62/403 (15%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L + +VGG VRD L+ +D DI T P ++ ++F R Sbjct: 22 SPNAVKVLYRLKDNGFTAYLVGGGVRDLLLGREPKDFDIVTDATPLQIKKMFRNCRL--- 78 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-----------------------------TDG 102 + + + + ++ T RS + DG Sbjct: 79 -IGRRFRLAHLHFQDEIIEVATFRSARLDDVPAEEPAAMDESEGHTLTGRSPLLLKSEDG 137 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRIL 161 + D++RRDFT+NAL + +IDYVGGL+DL+ I+ IGD+ R + Sbjct: 138 MVLRDNIFGTPAEDAVRRDFTVNALAYNISDFSLIDYVGGLDDLQRGVIRTIGDSGIRFV 197 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R++R RF A G + ++ ++ + S R++ E+ KL Sbjct: 198 EDPVRMIRAVRFAAMLGFR-VEETTWQTILELSPTVTKASPPRLYEEVLKLFLLGAGERT 256 Query: 222 IVHMYNGGIFKEIFLDVQEI---------------SLDQLSQVIEAEQVFEWKIDSLLRF 266 + GIF +F + +LD L I+ + K+ L F Sbjct: 257 YQLLRQSGIFSALFPHFNDWLERESDGFPHTWVGKALDHLDNAIQNGE----KVQPPLLF 312 Query: 267 IVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 ++ S ++ S K LP + ++ F + + + ++ Sbjct: 313 ALMFSQYLQEKAESFRKA-GLP---AHPAVNAAVAEFMGEVAPTVQFPNRVAILIRDILT 368 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 ++ + L H +T ++ + + + +TG+D Sbjct: 369 SQHR----LRKIPGRHPETFATRHGFAEALSYLRFASAITGED 407 >gi|300690555|ref|YP_003751550.1| poly(A) polymerase I [Ralstonia solanacearum PSI07] gi|299077615|emb|CBJ50250.1| poly(A) polymerase I [Ralstonia solanacearum PSI07] Length = 515 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 119/269 (44%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIQPKDFDVATNATPEQVEALFRRSR 122 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDP 238 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 H R ED +R+LR RF A G +ID + + + + R++ E+ KLL + Sbjct: 239 HTRYREDPVRMLRVVRFAAKTG-FDIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + +++L+Q Sbjct: 298 HAWASLQELRKAGLHSGLLP-LLDVALEQ 325 >gi|229846983|ref|ZP_04467089.1| probable poly polymerase [Haemophilus influenzae 7P49H1] gi|229810067|gb|EEP45787.1| probable poly polymerase [Haemophilus influenzae 7P49H1] Length = 452 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 133/325 (40%), Gaps = 29/325 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKV 70 + +N++ L + ++ IVGG +RD L+ +D D+AT P+++ IF + R Sbjct: 33 SRNALNVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRL-- 90 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDL-----------ITDGRYAKVVFTRDWKADSLR 119 + I+ + ++ T R++ +G + + D++R Sbjct: 91 --VGRRFRLAHIMFGRDIIEVATFRANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR 148 Query: 120 RDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RDFT+NALY + + DY G+ DL+ ++ IGD R ED +R+LR RF A Sbjct: 149 RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLD 208 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 ++ + LK + R++ E KLL+A + + +F+++F + Sbjct: 209 MF-LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYSLFEQLFPAL 267 Query: 239 QEISLDQLSQVIEA----------EQVFE-WKIDSLLRFIVLISWQDKKSILSMAKKFSL 287 ++ E E+V + +I+ F + ++ + + + L Sbjct: 268 SSYFTEKEDSFAERMIVTALTSTDERVADKLRINPAFLFAAFFWYPLREKVEILKNEGGL 327 Query: 288 PREIRYFLISFFNCNFNQKTLSIPE 312 Y L + + L+ P Sbjct: 328 NNHDAYALAGNEVLDLFCRALAAPR 352 >gi|332877661|ref|ZP_08445404.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684410|gb|EGJ57264.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 473 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 87/443 (19%), Positives = 170/443 (38%), Gaps = 70/443 (15%) Query: 28 KSCIVGGAVRDSLMNLS-VQDIDIATTI----LPDRVMRIFSKTRYKVIPTSISYGTIKI 82 +S ++GG VRD L+ +DIDI + L ++V + + ++GT I Sbjct: 25 ESYVIGGFVRDFLLQKKLPKDIDIVSIGSGISLAEKVAEQLPNS--PKVSVFKNFGTAMI 82 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDY 138 + R + V + + D RRDFTINA+ D G++ID Sbjct: 83 KADGLDIEFVGARRESYESNSRKPYVESGTLQDDQNRRDFTINAMAFSLNKDTFGELIDP 142 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL + I+ D +D LR++R RF + I+ L A K K+ L+ Sbjct: 143 FDGLGDLERKLIRTPLDPDITYSDDPLRMMRAIRFATQLNFQ-IEDTSLNAISKNKERLQ 201 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----------SLDQLSQ 248 I+S+ERI E++K+L A P + +Y + I ++ + D Sbjct: 202 IISNERIVDELHKILLAAKPSIGLKLLYETELLHYILPELIALQGVQEQDGQRHKDNFWH 261 Query: 249 VIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK----------------FSLPREI 291 +E + + E + LR+ L+ K KK + L + + Sbjct: 262 TLEVVDNIAEHTDNLWLRWAALLHDIGKAPTKRFDKKIGWTFHGHEFVGSKMVYHLFKRL 321 Query: 292 RYFL------------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 R L +S + ++ +++L + G++ + + L + Sbjct: 322 RMPLNDKMKYVQKIVKMSSRPIVIAEDIVTDSAVRRLVFDAGEE-----FEDLMTLCEAD 376 Query: 340 LTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 +T ++ + + + H + P++G+++++ +G+PP + VG + Sbjct: 377 ITTKNPKKFKKYHDNFQIVRQKVVEVEEKDHIRNFQPPISGEEIMQTFGLPPSQPVGVLK 436 Query: 386 VHCKQEWINSSFQLSQEDLHHLL 408 K+ + + + Sbjct: 437 EAIKEAILEGKIPNEYQAAKAFM 459 >gi|317181954|dbj|BAJ59738.1| poly(A) polymerase [Helicobacter pylori F57] Length = 407 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 168/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG +RD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELQELFGIYEKSPHELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N ++N+ I+ +G+A R ED LRILR RF A G K + S A Sbjct: 125 SPTKGIIDPFKGQNAIKNQIIECVGEARLRFFEDALRILRALRFSATLGFKIVLS-TKEA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NK L KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKFLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ + C+ Sbjct: 238 KNAPFNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFLKAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + E+K L Y + L F AL + + ++ + +KK L G Sbjct: 286 NKTELKFLLKNYDLEPFNLAL-DFYALKNPKRALKIKTLLKEISNANEPFKKEHLALKGS 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I S E L ++ Sbjct: 345 TLQNLGYQRQK-IGEILNACLNLVIAHPKNNSLEWLIKWVK 384 >gi|46446942|ref|YP_008307.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila UWE25] gi|46400583|emb|CAF24032.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila UWE25] Length = 424 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 10/289 (3%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D D + +L L + +VGG+VRD L+ +D DI+T+ P+++ IF + Sbjct: 15 PALIDRDALYVLERLRHAGFTAYLVGGSVRDLLLKRVPKDFDISTSARPEQIKAIFQRQ- 73 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 I + I K +++T R+ G + D LRRDFTIN L Sbjct: 74 --CILIGRRFRLAHIRFGHKIIEVSTFRTGENDSGLILHDNEWGTPEEDVLRRDFTINGL 131 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + D +IDYV G D++ ++ IG+ R +D +R+LR +F A Y K I+ Sbjct: 132 FYDSSNHSIIDYVNGWEDVQKHLLRTIGEPEKRFKQDPVRLLRLLKFHARYNFK-IEEQT 190 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI----- 241 A + + S RI EI ++LE+ I + GI +F + ++ Sbjct: 191 EQAIHVCRIEITKSSPARILEEILRMLESGASAPFIKLLAEYGILNILFPSLTQLLKTTY 250 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPRE 290 + A+Q+++ K ++L +L + + K L ++ Sbjct: 251 GKTIFHYLTCADQLYQHKGKNVLDRAILTACLLFPVLERELDKHYLSKK 299 >gi|289667258|ref|ZP_06488333.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 455 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F Sbjct: 32 TISRKDIS-PNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ + +GR + + Sbjct: 91 RNCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIED 146 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGDA R ED +R+LR R Sbjct: 147 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDAELRYQEDPVRMLRAVRLA 206 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A + I++ + L + R++ EI KL + + +++ + G+F + Sbjct: 207 AKL-DFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVSSFEGLERYGLFGAL 265 Query: 235 FLD 237 F + Sbjct: 266 FPE 268 >gi|183597873|ref|ZP_02959366.1| hypothetical protein PROSTU_01207 [Providencia stuartii ATCC 25827] gi|188022633|gb|EDU60673.1| hypothetical protein PROSTU_01207 [Providencia stuartii ATCC 25827] Length = 415 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V D D + P+ ++ + K P + T + Sbjct: 3 KVYLVGGAVRDELLGLPVSDRDYVVVGSTPETMLAQGFQQVGKDFPVFLHPQTHE----- 57 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D LRRD TINA+ D QG++ D G+ Sbjct: 58 ---EYALARTERKTGAGYTGFSCYSAPDVTIEDDLLRRDLTINAIAKDDQGQLTDPYNGV 114 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGL--VASIKAKKGLK 198 +DL+ R ++ + +A ED LR+LR RF A Y E +I + L + ++ A L Sbjct: 115 DDLKARVLRHVSEA---FAEDPLRVLRVARFAARYAEQGFHIAPETLSLMQTMTASGELT 171 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W+E K L++K+P + G +F ++ + + A + Sbjct: 172 HLTAERVWAETEKALKSKSPQVYFEVLRQCGALAVLFPEIDNLF------GVPAPAKWHP 225 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L MA + S +IR+ + C+ K L+ I Sbjct: 226 EIDTGIHTLM---------VLRMAAQLSTDVDIRFSAL----CHDVGKALTPKTIWPSHP 272 Query: 319 LYGDKVM------------------IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 +G+ + +A+L + + ++Q+ + W+K Sbjct: 273 HHGEAGVALIDNLCDRLKIPNSARELARLTARFHDKIHVINRLTAQELVQLFDGLDSWRK 332 Query: 361 PL 362 P Sbjct: 333 PE 334 >gi|113869035|ref|YP_727524.1| Poly(A) polymerase [Ralstonia eutropha H16] gi|113527811|emb|CAJ94156.1| Poly(A) polymerase [Ralstonia eutropha H16] Length = 513 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 75/341 (21%), Positives = 140/341 (41%), Gaps = 59/341 (17%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + ++ IVGGAVRD L+ + +D D+AT PD+V +F ++R Sbjct: 38 PALLSRNAVKVTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSR 97 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLR-------SDLITDGRYAKVVFTRDWK-- 114 + + + ++ +++T R S+ + +GR K Sbjct: 98 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKTHA 153 Query: 115 -----------------ADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 D+ RRDFTINA+Y D + V DY G+ D+R RT++ IGD Sbjct: 154 IDASGRVLRDNVWGSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDP 213 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A +ID + + S R++ E+ KLL + Sbjct: 214 VTRYREDPIRMLRVVRFAAK-TSFDIDEATRHPIAGLASLIHNVPSARLFDEMLKLLMSG 272 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQ------------EISLDQLSQVIEAEQVFEWKIDSLL 264 + ++ + G+ + + + +++LD + ++A + + Sbjct: 273 HAWASLQELRKAGLHQGLLPLLDVALEQPMGQRFVQLALDNTDRRVQAGK----PVSPGF 328 Query: 265 RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 F L+ + ++++ RE I+ N + Sbjct: 329 LFAALLWHH-------VLQRWTRLREEGEHAIAALNTAMDM 362 >gi|254670458|emb|CBA06113.1| poly(A) polymerase [Neisseria meningitidis alpha153] Length = 453 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FDLSEETTAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|238750941|ref|ZP_04612438.1| Phosphatase [Yersinia rohdei ATCC 43380] gi|238710855|gb|EEQ03076.1| Phosphatase [Yersinia rohdei ATCC 43380] Length = 412 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 153/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRDSL+NL V + D + P++++ + K P + + + Sbjct: 2 EIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVFLHP-----VSHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ +GK+ D G DL Sbjct: 57 EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGKLFDPYNGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA ED LR+LR RF A + ++ L+A++ L L+ Sbjct: 117 ANRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVAPETQSLMAAMAESGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L+ +P + + G +F +++ + + A + + +ID Sbjct: 174 PERVWKETEKALKTSSPQIYFQVLRDCGALAVLFPEIERLF------GVPAPEKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L++A K S ++R+ + C+ K L+ E + +G Sbjct: 228 TGIHTLM---------TLAIAAKLSPEVDVRFAAL----CHDLGKGLTPKEFWPHHHGHG 274 Query: 322 D------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L++ L Y++L H +L++ I W+KP Sbjct: 275 PAGVKLVEQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333 >gi|83748968|ref|ZP_00945977.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia solanacearum UW551] gi|207744197|ref|YP_002260589.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum IPO1609] gi|83724391|gb|EAP71560.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia solanacearum UW551] gi|206595602|emb|CAQ62529.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum IPO1609] Length = 516 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSR 122 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDP 238 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 H R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + Sbjct: 239 HTRYREDPVRMLRAVRFAAKTG-FDIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + + +++L+Q Sbjct: 298 HAWASLQELRKAGLHRGLLP-LLDVALEQ 325 >gi|755607|gb|AAA92878.1| polyA polymerase [Bacillus subtilis subsp. subtilis str. 168] Length = 377 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 92/398 (23%), Positives = 154/398 (38%), Gaps = 36/398 (9%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L +L + ++ VGGAVRDS M ++ D+DIAT PD+V R+F +T + Sbjct: 8 ALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIATDAAPDQVERLFQRT----VDVG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 SD + R ++V F + D RRD TINA+ GK Sbjct: 64 KD------------------ESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTADGK 105 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 V+DY GG D+ + I+ +G R ED LR+LR RF + G + + A K K Sbjct: 106 VLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLG-FTLSPETEEAIAKEK 164 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 L +S ER E KLL+ + A+ + +++ ++ + + + +E Sbjct: 165 SLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYE----ELPGFYHKRENLISTSEF 220 Query: 255 VFEWKIDSLLRFIVLISWQDK--KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 F + L+ K K + LP ++ I + Sbjct: 221 PFFSLTSREELWAALLINLGIVLKDAPLFLKAWKLPGKVIKEAIHIADTFGQSLDAMT-- 278 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 Y G K +++ KI L + I ++ +TG D++ Sbjct: 279 ----MYRAGKKALLSAAKISQLRQNEKLDEKKLKDIQYAYQNLPIKSLKDLDITGKDLLA 334 Query: 373 Y-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P GK V L +Q + ++ + L+ Sbjct: 335 LRNRPAGKWVSEELQWIEQAVVTGKLSNQKKHIEEWLK 372 >gi|24215701|ref|NP_713182.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira interrogans serovar Lai str. 56601] gi|304570488|ref|YP_001035.2| poly A polymerase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196872|gb|AAN50200.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira interrogans serovar Lai str. 56601] Length = 487 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 19/243 (7%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ Sbjct: 35 RKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNC 94 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-----------KA 115 R + + I+ R K +++T RS + D R K V +D+ + Sbjct: 95 RI----IGRRFKIVHILFRGKVIEVSTFRS--LPDYRLGKAVEDQDYLIKRDNKFGTPQE 148 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F Sbjct: 149 DAARRDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKFA 208 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 G NI+ A K K L+ SS R+ E NK+ M GI + + Sbjct: 209 EILG-LNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGILEVL 267 Query: 235 FLD 237 F + Sbjct: 268 FKE 270 >gi|114567328|ref|YP_754482.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338263|gb|ABI69111.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 437 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 96/437 (21%), Positives = 182/437 (41%), Gaps = 49/437 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 ++ IL+ L+ ++ I G +RD L+ + DI T LP+ + IF + I Sbjct: 7 ENVQTILNKLHSNGYQAYIYGACIRDYLLGKEPINWDITTNALPNNTVVIFDENEGFTSI 66 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 P+ YG + + + + + T R+ F D D L +DFT+N++ ++ Sbjct: 67 PSVEDYGIVTLHFKGESCQVNTFRTGEA-------RRFADDISEDLLHKDFTMNSIAYNE 119 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 Q ++D G+ D+ R I+ + + ++ ED RILR RF + G K I+++ L A Sbjct: 120 QAGIVDPYNGVGDIEKRLIRCAQNPYEQMQEDSARILRAVRFESQLGFK-IEAELLQAMK 178 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 K + S R+ +E +LL ++ P +I + G+ + + ++ Sbjct: 179 DLKDTVPA-SGSRVRNEFIQLLLSEQPSRSIRRLLELGLLERLIPELMPAIGFDTHSSYH 237 Query: 252 AEQVFEWKIDSL--------LRFIVLISWQDKKSILSMAK-------------------- 283 + VFE + L LR L+ DK + L++ + Sbjct: 238 DKDVFEHSLVVLDNTEPNLTLRLAALLHDIDKPNCLTIDEDGEGHCYGHASGGSEMAQAI 297 Query: 284 --KFSLPREIRYFLISFFNCNFNQ-KTLSIPEIKKLFYLYGDKVMIAKLKIFLA-LHYNN 339 + + R+ + S + N +S IK+L G + ++ LA + + Sbjct: 298 LGRLNFDRKTIQAVSSLIKEHMNDFGNISDLSIKRLIRRVGPDNIDRLFELQLADIKGSA 357 Query: 340 LTHQDTCFI-------LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 L+ +D I +VLS ++G D++ G PPGKK+G + + + Sbjct: 358 LSSRDPERITKIRNKCFEVLSRREPLTVHDLDISGYDLLSLGYPPGKKIGETMDYLLDQV 417 Query: 393 INSSFQLSQEDLHHLLR 409 I++ ++ L LL+ Sbjct: 418 IDNPSLNQRDTLIALLK 434 >gi|238762459|ref|ZP_04623430.1| Phosphatase [Yersinia kristensenii ATCC 33638] gi|238699444|gb|EEP92190.1| Phosphatase [Yersinia kristensenii ATCC 33638] Length = 412 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 84/359 (23%), Positives = 154/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRDSL+NL V + D + P++++ + K P + + + Sbjct: 2 EIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVFLHP-----VSHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ +G++ D G DL Sbjct: 57 EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGRQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA ED LR+LR RF A + ++ L+AS+ L L+ Sbjct: 117 ENRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVAPETQSLMASMAKSGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L+ ++P + + G +F +++ + + A + + +ID Sbjct: 174 PERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERLF------GVPAPEKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L++A + S ++R+ + C+ K L+ E + +G Sbjct: 228 TGIHTLM---------TLAIAAQLSPEVDVRFAAL----CHDLGKGLTPKEFWPHHHGHG 274 Query: 322 D------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L++ L Y++L H +L++ I W+KP Sbjct: 275 PAGVKLVEQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDTIDVWRKPE 333 >gi|89095126|ref|ZP_01168052.1| poly(A) polymerase [Oceanospirillum sp. MED92] gi|89080621|gb|EAR59867.1| poly(A) polymerase [Oceanospirillum sp. MED92] Length = 467 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 130/325 (40%), Gaps = 35/325 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + F D + + + L + +VGG +RD L+ +D D+AT P+ +F + R Sbjct: 45 RRFLDDNALKVAYRLQDAGFEGYLVGGCIRDLLLKKRPKDFDVATDAHPEEAAELFRRAR 104 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--------------VVFTRDW 113 + + + + ++ T R+ + + Sbjct: 105 L----IGRRFKLVHVRFGRDLIEVATFRASHDSQSEEGEGEQGKQCDSGLILRDNVYGTI 160 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+LRRDFT+NALY V D+ G DL+ ++ IGD R ED +R+LR R Sbjct: 161 EDDALRRDFTVNALYYCPKDHCVYDFANGYEDLQKGILRMIGDPEARYKEDPVRMLRAAR 220 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F A + ID + I LK ++ R++ E+ KL ++ + + + + +F+ Sbjct: 221 FAAKL-DFTIDPQSELPIIPLAPMLKRIAPARLFDEVLKLFQSGHAVQSYEQLRRLELFE 279 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 +F V + ++ EQ+ + LI+ K + +A++ S+ Sbjct: 280 PLFPLV--------HRTLQQEQL-------DVPLENLINNALKNTDRRLAQRKSVTPAFL 324 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLF 317 + I ++ + L + Sbjct: 325 FAAILWYPTQIRMQQLMKEKKMPPL 349 >gi|212551022|ref|YP_002309339.1| tRNA nucleotidyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549260|dbj|BAG83928.1| tRNA nucleotidyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 474 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 83/471 (17%), Positives = 175/471 (37%), Gaps = 58/471 (12%) Query: 1 MVSI-VQHKWFHDSDLINIL-SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDR 58 M SI + + + + +L S + + ++GG VRD ++ +DID+ Sbjct: 1 MSSIQISREKLQTNPIFRVLTSTSDTLGVDAYVIGGFVRDIFLHRLSKDIDVVCVGNGIS 60 Query: 59 VMRIFSKTRYKV-IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 + + +K+ + +YGT ++ R + R + + +V + D Sbjct: 61 LAKEVAKSLGSASLILFKNYGTAQLKYRDIAIEFVGARKESYSWAFRNPIVEEGSLEDDI 120 Query: 118 LRRDFTINALY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 RRDFTIN L ++ G++ID GL DL +I+ D +D LR+LR RF Sbjct: 121 KRRDFTINTLAICINQNRFGELIDIFDGLTDLEECSIRTPLDPDITFSDDPLRMLRAIRF 180 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + G I+S + + I+S ERI E+NK++ + P + G+ + Sbjct: 181 ASQLGFF-IESKTFESIGNNCNRINIVSRERIVDELNKIILSPRPSVGFELLEKTGLLRL 239 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKIDS-----------LLRFIVLISW---------- 272 I ++ + + + I + F + LR+ L+ Sbjct: 240 ILPELTALKGIETREGIGHKDNFNHTLAVVDNLAKVSNKLWLRWAALLHDIGKPLVKRFN 299 Query: 273 ------------QDKKSILSMAKKFSLPRE------IRYFLISFFNCNFNQKTLSIPEIK 314 + + + + ++ +P + + + ++ I+ Sbjct: 300 YRCGWTFHGHECKGAEMLKKIFRRMRMPINNNLQYVEKLVFLHMRPIVLSDNEVTDSAIR 359 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI---------LQVLSDIIHWKKPLFPL 365 +L + D + + + A + + F+ L+ + + + P+ Sbjct: 360 RLLFEASDDI-DDLMMLCEADITSKNLGKVKQFLYNFKLVRNKLKSIEEKDRVRNFQPPI 418 Query: 366 TGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G +++K +P KK+G + + K+ ++ E H+ L L Sbjct: 419 DGVEIMKMFSLPASKKIGELKLALKEAILDGEIPNEYEAAHNYLINLAKQR 469 >gi|33591480|ref|NP_879124.1| poly(A) polymerase [Bordetella pertussis Tohama I] gi|33571122|emb|CAE40619.1| poly(A) polymerase [Bordetella pertussis Tohama I] gi|332380931|gb|AEE65778.1| poly(A) polymerase [Bordetella pertussis CS] Length = 451 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 12/223 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ + GR + + D+ RRDFT+N Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMN 152 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+ Sbjct: 153 ALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDT 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 ++ + + R++ E+ KLL + ++ + + N Sbjct: 212 ATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254 >gi|188586271|ref|YP_001917816.1| CBS domain containing protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350958|gb|ACB85228.1| CBS domain containing protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 890 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 95/421 (22%), Positives = 170/421 (40%), Gaps = 34/421 (8%) Query: 13 SDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 S ++ +L L+ +K K VGG +RD L+ DID+ ++ SK Sbjct: 469 SKILGVLYLIGQKADKEGFKVYGVGGFIRDLLLGKDNLDIDLVIEQDAISFAKLVSKHLN 528 Query: 69 KVIPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + T + T ++ R D T R + + V K D RRDFTIN L Sbjct: 529 GDLKTFSQFQTARLTLRSGTRIDFATARIEYYAFPAASPEVEESTIKQDLYRRDFTINTL 588 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 + GK++D+ GG DL+ I+ + + +ED RI R RF + + NI+ Sbjct: 589 AVELNCNSFGKLLDFFGGTKDLKKGVIRVLYN--LSFVEDPTRIFRAIRFESRFN-FNIE 645 Query: 184 SDGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 L+ + + L L ER++ E+ +++ +N M GIF +IF ++ + Sbjct: 646 EQTLIFIKNSLETGVLDKLPGERLYEELRNIVDEDEAVNTFRRMDELGIFTKIFPNL-NV 704 Query: 242 SLDQLSQVIEAEQVFEWKI------------DSLLRFIVLISWQDKKSILSMAKKFSLPR 289 S D+L ++ + W + F L+ Q I S+ ++ +P+ Sbjct: 705 SQDKLVKLQNIYDILNWYERENKQKQEKFVSKEAMVFSCLLQDQPLPIISSILERLKVPQ 764 Query: 290 EIRYFLI-SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFI 348 +IR +I + L E +++ + + LA N + I Sbjct: 765 KIRDVIITTVKETESLSSKLEYTEKNSELVQNLEEIPLETILFVLADKEN---QKIKNKI 821 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 L ++I +TG+D+ GI PG L ++ ++ +E+L ++L Sbjct: 822 YYYLEELIG---AGVSITGEDLKTLGIKPGPVYKTALEEVRKARLDGLVTTPEEELEYVL 878 Query: 409 R 409 Sbjct: 879 D 879 >gi|332283312|ref|YP_004415223.1| poly(A) polymerase [Pusillimonas sp. T7-7] gi|330427265|gb|AEC18599.1| poly(A) polymerase [Pusillimonas sp. T7-7] Length = 453 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCEVLRAEGYDAYIVGGAVRDLIVGLEPKDFDVATNATPNQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------GRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ +D GR + + D+ RRDFT+N Sbjct: 94 -IGKRFQLVHVVFGQEIIETSTFRATATSDEHTDEHGRILRDNLFGSQQEDAARRDFTLN 152 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VIDY G+ DL+NR ++ IGD R ED +R+LR RF A ID Sbjct: 153 ALYYDPINEEVIDYHRGVPDLKNRVVRMIGDPEKRYREDPVRMLRALRFAAKLN-GTIDP 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 ++ + S R++ E KLL + ++ + + G+ K + + + + Sbjct: 212 ATQAPIAPLSGLIEHVPSSRLFDETLKLLTCGHAMDCLRQLQTMGLHKGLLPLIDAVFQE 271 Query: 245 Q 245 + Sbjct: 272 E 272 >gi|269101800|ref|ZP_06154497.1| poly(A) polymerase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161698|gb|EEZ40194.1| poly(A) polymerase [Photobacterium damselae subsp. damselae CIP 102761] Length = 430 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 28/265 (10%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L LNK + +VGG VRD L+N +D DIAT P+ + +F R + Sbjct: 2 LYRLNKAGFDAYLVGGGVRDLLLNKQPKDFDIATNATPEEIKALFRNCRL----VGRRFR 57 Query: 79 TIKIICRKKYFDITTLRSDLIT--------------------DGRYAKVVFTRDWKADSL 118 I+ + ++ T R G + D+ Sbjct: 58 LAHILFGRDIIEVATFRGHHSDPQPLPKEKEAKQKQTSAQNQSGMLLRDNVYGTIDEDAE 117 Query: 119 RRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFTINALY + V DY G+ DL + I+ IGD R ED +R+LR RF A Sbjct: 118 RRDFTINALYYSVKDFTVTDYAHGVEDLDDGIIRLIGDPETRYREDPVRMLRAVRFAAKL 177 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + NI+ + + L+ + + R++ E KLL++ L + +F+++F Sbjct: 178 -DMNIERNTEAPIKQLAHLLQDIPAARLFEESLKLLQSGQGLATYHLLRQYNLFEQLFPL 236 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDS 262 + E + + + E + E + + Sbjct: 237 LGEHFTE--DRSSQTELMLEHILQA 259 >gi|33598144|ref|NP_885787.1| poly(A) polymerase [Bordetella parapertussis 12822] gi|33566702|emb|CAE38912.1| poly(A) polymerase [Bordetella parapertussis] Length = 451 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 12/223 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ + GR + + D+ RRDFT+N Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMN 152 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+ Sbjct: 153 ALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDT 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 ++ + + R++ E+ KLL + ++ + + N Sbjct: 212 ATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254 >gi|121634621|ref|YP_974866.1| putative poly(A) polymerase [Neisseria meningitidis FAM18] gi|120866327|emb|CAM10068.1| putative poly(A) polymerase [Neisseria meningitidis FAM18] Length = 448 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 36 AENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 91 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 92 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 151 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G ++ + Sbjct: 152 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FDLSEETAAP 210 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 211 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 264 >gi|33603037|ref|NP_890597.1| poly(A) polymerase [Bordetella bronchiseptica RB50] gi|33568668|emb|CAE34426.1| poly(A) polymerase [Bordetella bronchiseptica RB50] Length = 451 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 12/223 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + ++ IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ + GR + + D+ RRDFT+N Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMN 152 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID+ Sbjct: 153 ALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLN-GSIDT 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 ++ + + R++ E+ KLL + ++ + + N Sbjct: 212 ATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRN 254 >gi|256424923|ref|YP_003125576.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chitinophaga pinensis DSM 2588] gi|256039831|gb|ACU63375.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chitinophaga pinensis DSM 2588] Length = 483 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 170/457 (37%), Gaps = 74/457 (16%) Query: 17 NILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATT----ILPDRVMRIFSKTRY 68 +L + + ++GG VRD ++N +D+D+ L +V F + Sbjct: 23 KVLEQIALAAHELGVACYLIGGFVRDKILNRRTKDMDVVCVGDGIALAHKVAGYFDNAKV 82 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 T YGT ++ + R + V + D LRRDFTINAL Sbjct: 83 SFFKT---YGTAQVKWNDLEIEFVGARKESYRHESRNPDVEPGTLRDDQLRRDFTINALA 139 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G ++D GG+ DL + I+ + ++D LR++R RF + + I Sbjct: 140 ISLNEADYGSLVDPFGGIADLEAKIIRTPLEPAQTFIDDPLRMMRAIRFASQL-QFTISE 198 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241 + + + +KI+S ERI E NK++ + P + +Y GI K I + ++ Sbjct: 199 ESFKGIKENAERIKIISQERITDEFNKIMLSPVPSVGLDLLYKAGIMKIILPQMVDLVGV 258 Query: 242 -------SLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAK---------- 283 D ++ + + D LR+ L+ K + + Sbjct: 259 ETVDGKGHKDNFYHTLQVVDNIARNTKDLWLRWAALLHDIGKPATKRFEQGHGWTFHGHD 318 Query: 284 ------------KFSLPREIRYFLIS------FFNCNFNQKTLSIPEIKKLFYLYGDKVM 325 K LP L+ + ++ ++ I++L + GD + Sbjct: 319 AVGGKMVTRIFTKMKLPLHEDMRLVKKLVELHLRPISVTKENITDSAIRRLLFDAGDDI- 377 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVL-------------SDIIHWKKPLFPLTGDDVVK 372 + + L ++T ++ + + L + + P+TG+ +++ Sbjct: 378 ----EGLMMLCEADITSKNKAKVKRYLENFELVRQRLKEVEESDRIRNWQPPVTGEMIME 433 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 +G+ P + VG++ ++ ++ S + + L Sbjct: 434 TFGLSPSRVVGDLKNAIREAILDGVIPNSYDAAYAFL 470 >gi|78047370|ref|YP_363545.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924974|ref|ZP_08186400.1| poly(A) polymerase [Xanthomonas perforans 91-118] gi|78035800|emb|CAJ23491.1| Polynucleotide adenylyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544637|gb|EGD15994.1| poly(A) polymerase [Xanthomonas perforans 91-118] Length = 455 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 154/385 (40%), Gaps = 32/385 (8%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT P+ V +F Sbjct: 32 TISRKDIS-PNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R+++ + +GR + + Sbjct: 91 RNCRL----IGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIED 146 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 147 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A +I++ + L + R++ EI KL + + + + + G+ + Sbjct: 207 AKLN-FDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGVL 265 Query: 235 FLD------------VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282 F + ++ + L+ L E + L F +L+ ++++++ Sbjct: 266 FPESAAALKSNRSGALRAMVLEGLRNTDARVANDEPVSPAFL-FALLLWPAFCRTLMALQ 324 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPE----IKKLFYLYGDKVMIAKLKIFLALHYN 338 + P + + + ++ +++++ L + ++F L + Sbjct: 325 AQGVQPEDAQRRAADRVTLHQLERVALPRRFSLPMQEIWLLQTRFSSRQRKRVFRTLSHP 384 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLF 363 +L+ + H F Sbjct: 385 RFRAAFDFLVLRQFASPDHAADVEF 409 >gi|161869779|ref|YP_001598947.1| poly(A) polymerase [Neisseria meningitidis 053442] gi|161595332|gb|ABX72992.1| poly(A) polymerase [Neisseria meningitidis 053442] Length = 453 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R + G ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLG-FDLSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|225024314|ref|ZP_03713506.1| hypothetical protein EIKCOROL_01189 [Eikenella corrodens ATCC 23834] gi|224942899|gb|EEG24108.1| hypothetical protein EIKCOROL_01189 [Eikenella corrodens ATCC 23834] Length = 457 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 144/389 (37%), Gaps = 48/389 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++S L + ++ +VGGAVRD L+ + +D D+AT P+ V ++F ++R Sbjct: 42 AEKVVSRLQQAGFEAYVVGGAVRDLLLGIEPKDFDVATNARPEEVRKVFRRSRI----IG 97 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-----TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + + ++ + ++TT R GR + + D+ RRDFT NALY Sbjct: 98 RRFQIVHVMVGPETIEVTTFRGGGSPARQNEHGRIMQDNSYGSMEQDAARRDFTCNALYY 157 Query: 130 DQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + +G++ D+ G+ D+R + + IGDA R ED +R+LR R G + + D Sbjct: 158 NPARGEITDFHHGVADIRAKRLVMIGDARARYQEDPVRMLRAARLSGKLGFQ-VAPDTAA 216 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 + L R++ E+ KLL + ++ + M G+ + + +L++L + Sbjct: 217 PIAECLHLLPKEPLARLFDEVMKLLFSGAAIDCLKQMQALGMDGQSVHPLLACALERLPE 276 Query: 249 V----------------------------------IEAEQVFEWKIDSLLRFIVLISWQD 274 + + ++ S LR + +S Sbjct: 277 NQGRGIVVLALNSTDSRLRADQGVSVGFVLAAVLWPQVREAWQRAQSSGLRTMPALSAAV 336 Query: 275 KKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 ++ +M K + +P F S Q + F L A L Sbjct: 337 AETRANMEKGWGVP---HRFTASMREIWQLQPQFEHRRGARPFRLLAQPRFRAAYDFLLL 393 Query: 335 LHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 Q + ++ Sbjct: 394 RARAGEVEQGIADWWTAFQEADEEQRKQM 422 >gi|325142111|gb|EGC64537.1| poly(A) polymerase [Neisseria meningitidis 961-5945] Length = 453 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L + ++ +VGGAVRD L+ + +D D+AT +P++V ++F ++R Sbjct: 41 AENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----VG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|299065813|emb|CBJ36991.1| poly(A) polymerase I [Ralstonia solanacearum CMR15] Length = 515 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 63 PKLLSRNAVKVTSTLQEAGYGAFIVGGAVRDLLLGIKPKDFDVATNATPEQVEALFRRSR 122 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDP 238 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 H R ED +R+LR RF A G +ID + + + + R++ E+ KLL + Sbjct: 239 HTRYREDPVRMLRAVRFAAKTG-FDIDPATRAPIAELGALIHNVPAARLFDEMLKLLMSG 297 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + + +++L+Q Sbjct: 298 HAWASLQELRKAGLHRGLLP-LLDVALEQ 325 >gi|15611650|ref|NP_223301.1| polynucleotide adenylyltransferase [Helicobacter pylori J99] gi|4155144|gb|AAD06174.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99] Length = 402 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 168/401 (41%), Gaps = 24/401 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + +L + + K + +VGG +RD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EKELKELFDIYEKSPYELYLVGGCMRDCLMGITPKDYDLTSNALVNESKELLLKHDFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRMEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G N + N+TI+ +G+A R ED LRILR RF A G K I + A Sbjct: 125 SPTKGLIDPFKGQNAIENQTIECVGEARLRFFEDALRILRALRFSATLGFK-IAASTKRA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTL 308 A E LR + Q + P++ C+ Sbjct: 238 KNAPLNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFAQAKECHKAFLNIH 285 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 S E+K L + + L F AL + + ++ +KK L G Sbjct: 286 SKTELKFLLKDHDLEPFNLAL-DFYALENPKRALKIKGLLKEIFDSNEPFKKEHLALKGG 344 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + + E L ++ Sbjct: 345 TLQSLGYQHQK-IGEILNACLNSVIENPKNNALEWLIEWVK 384 >gi|325198046|gb|ADY93502.1| poly(A) polymerase [Neisseria meningitidis G2136] Length = 445 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L + ++ +VGGAVRD L+ + +D D+AT +P++V ++F ++R Sbjct: 33 AENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----VG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 89 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 148 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G + + Sbjct: 149 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 208 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 261 >gi|291326511|ref|ZP_06573973.1| multifunctional CCA protein [Providencia rettgeri DSM 1131] gi|291313991|gb|EFE54444.1| multifunctional CCA protein [Providencia rettgeri DSM 1131] Length = 417 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 159/374 (42%), Gaps = 60/374 (16%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTS 74 ++++ + K +VGGAVRD L+ L + D D + P+ ++ + K P Sbjct: 1 MDVIEAIQ---MKVYLVGGAVRDQLLGLPISDRDYVVVGTTPEAMLSQGFQQVGKDFPVF 57 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYAD 130 + T + + R++ Y + D LRRD TINA+ Sbjct: 58 LHPKTHE--------EYALARTERKIGAGYTGFSCYSAPDVTIEDDLLRRDLTINAIAQS 109 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDG 186 + G+++D G+ DL++R ++ + DA ED LR+LR RF A Y E ++ Sbjct: 110 ESGEIVDPYQGVKDLKSRVLRHVSDA---FSEDPLRVLRVARFAARYFEHGFTIAPETLT 166 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 L+ ++ A L L++ER+W+E K L++ +P + G +F +V + Sbjct: 167 LMQTMAATGELSHLTAERVWTETEKALKSNSPQVYFDVLRQCGALAVLFPEVDALF---- 222 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + A + + ++D+ + ++ ++ + + S +IR+ + C+ K Sbjct: 223 --GVPAPEKWHPEVDTGIHTLM---------VMKVIAELSNNVDIRFAAL----CHDLGK 267 Query: 307 TLSIPEIKKLFYLYGD------KVMIAKLKI--------FLALHYNNLTH----QDTCFI 348 L+ +I +G+ + + A+LK+ LA Y++ H + Sbjct: 268 ALTPTDIWPSHPNHGEAGIPLIETLCARLKVPTTARDLARLAARYHDKIHVINKLPANEL 327 Query: 349 LQVLSDIIHWKKPL 362 + + + W+KP Sbjct: 328 IAIFDGLDSWRKPE 341 >gi|297180382|gb|ADI16599.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma proteobacterium HF0010_01E20] Length = 447 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 127/276 (46%), Gaps = 13/276 (4%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 K D++ + ++ +LN ++ +VGG VRD+L + +D D+AT + V ++F ++ Sbjct: 50 RKQISDTNALTVIEVLNANGFQAYLVGGCVRDALCGVKPKDFDVATNATLETVRQLFRRS 109 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLR---SDLITD---GRYAKVVFTRDWKADSLRR 120 R + + + + +++T R SD I G + D+ RR Sbjct: 110 RI----VGKRFPIVHVRFGRDLIEVSTFRQSISDKIVHDDKGMILRDNAFGTLHEDAFRR 165 Query: 121 DFTINALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT NALY D ++ID+V G+ D++ + ++FIGD R+ ED +R+LR RF A G Sbjct: 166 DFTANALYYDPNSDEIIDFVDGVADIKRKLLRFIGDPKTRLAEDPVRMLRAIRFSAKLG- 224 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +ID L + + LK +S R++ E KL + + I +F Sbjct: 225 FSIDQQILNYTNETANSLKTVSPARLFDEFLKLFLSGYAEQVWRQVRETPIAGALFPCCI 284 Query: 240 EISLDQLSQVIEA-EQVFEWKIDSLLRFIVLISWQD 274 S L+ + E++ + I ++ W D Sbjct: 285 PSSPLVLAAMRNTDERILSGASVTPGFLIAVLLWDD 320 >gi|189346518|ref|YP_001943047.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobium limicola DSM 245] gi|189340665|gb|ACD90068.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobium limicola DSM 245] Length = 471 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 93/473 (19%), Positives = 175/473 (36%), Gaps = 72/473 (15%) Query: 8 KWFHDSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 K F + D+ +IL + + D+ +VGG VRD L+ DIDI P RI Sbjct: 2 KQFTEGDIPDILFRIGELADRENIPCYLVGGYVRDILIERPCTDIDIMIVGEPVAFARII 61 Query: 64 SKT-RYKVIPTSISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKADS 117 R K + T ++ ++ ++ R + + D Sbjct: 62 RNELRGKNFVVFERFRTAQLELTDEHAGALKIEVVGARKESYDLDSRKPFTEIGTIEDDL 121 Query: 118 LRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 RRDFTINAL D++G + D GL DL R ++ + +D LR++R RF Sbjct: 122 SRRDFTINALAVSLNSDKRGSLTDNYNGLGDLERRILRTPLEPEQTFSDDPLRMMRAARF 181 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + G D A + ++I+S ERI E K++ + P + +Y+ I + Sbjct: 182 VSQLG-FTPDPALAEAMKAMHERIRIVSRERISQEFFKIMLSPEPSRGLEMLYDTKILGD 240 Query: 234 IFLDVQEI-SLDQLSQVIEAEQVFE----------WKIDSLLRFIVLISWQDK------- 275 I +V + ++Q+ + + +F LR L+ K Sbjct: 241 ILPEVTAMAGIEQVDGLGHKDTLFHTFQVVDNLSRHSDKLWLRIAALLHDIAKPVTKRFH 300 Query: 276 ---------------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE-----IKK 315 K + + + P E ++ + LS E I++ Sbjct: 301 PSTGWTFHGHEAVGIKVVAKIFRSMRWPLEPLDYVQKMVRLHHRPIPLSKEEITDSAIRR 360 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL------------- 362 L + G L+ + L ++T ++ +++++ + + ++ + Sbjct: 361 LMFDAGPD-----LEDLMNLCRADVTSKNPRKVVRIMKNFENVEQKIAEVAEKDLLASWR 415 Query: 363 FPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P+ G D++ G+ GK +G I + I+ +E +RK+ Sbjct: 416 PPIDGSDIMTTLGLTEGKMIGIIKSRMENAIIDGLIPYEREAALTYIRKVYEE 468 >gi|300780175|ref|ZP_07090031.1| tRNA adenylyltransferase [Corynebacterium genitalium ATCC 33030] gi|300534285|gb|EFK55344.1| tRNA adenylyltransferase [Corynebacterium genitalium ATCC 33030] Length = 517 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 82/454 (18%), Positives = 166/454 (36%), Gaps = 61/454 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L +++ + + +VGG VRD+++ D+D T+ PD + I S V T Sbjct: 58 LTSLVREFHDRGESFYLVGGPVRDAMLGRLGNDLDFTTSARPDIIEAILSGWGEAVWDTG 117 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD--- 130 I +GT+ + + +ITT R+DL R +V F D +RRDF +NA+ + Sbjct: 118 IEFGTVSTVKDGQQVEITTFRADLYDGVTRNPEVTFGDAIDDDLVRRDFRVNAMAIELLV 177 Query: 131 ------QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 D V GL DL N + + +D LR+LR RF + G ++ Sbjct: 178 AEGEDSLALDFHDPVDGLKDLLNHVLDTPQEPEVSFRDDPLRMLRAARFVSQLG-FHVSE 236 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 A + + ++ ER+ +E++KL+ P I + G+ + ++ + L+ Sbjct: 237 RVKRAMTDMAQEINRITVERVQAELDKLMLGVQPWEGIDLLVETGLADHVLPEIPALKLE 296 Query: 245 Q-------------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA--------- 282 + L+ + +A ++ E D LR+ L+ K Sbjct: 297 RDEHMQHKDVYAHSLTVLRQATELEEEGPDLKLRWAALMHDIGKPDTREAKPGGGVSFHH 356 Query: 283 -------------KKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVMI 326 +K P+ + + + + Y+ ++ Sbjct: 357 HEVVGAKLTRKRMRKLKYPKHMIEDVGQLVYLHMRFHGFGEGQWTDSAVRRYVTDAGDLL 416 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGI 375 +L + + + + + + L G+++++ G+ Sbjct: 417 PRLHKLVRADCTTRNPKKAARLQRTYDHLEERIADLAAKEDLARVRPDLDGNEIMEILGL 476 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 PG +VG + K + +L +++ L+ Sbjct: 477 EPGPQVGKAWKYMKDLRLEHG-ELGRDEAVAKLK 509 >gi|163855127|ref|YP_001629425.1| poly(A) polymerase [Bordetella petrii DSM 12804] gi|163258855|emb|CAP41154.1| poly(A) polymerase [Bordetella petrii] Length = 451 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 12/222 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I + +L + + IVGGAVRD ++ L +D D+AT P+++ +F + R Sbjct: 37 SRHAIKVCEVLRQHGYSAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ + +T R+ + GR + + D+ RRDFT+N Sbjct: 94 -IGRRFQLVHVVFGQEIIETSTFRAPASQDQETDEHGRILRDNVFGTHEEDAARRDFTMN 152 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D +VIDY G+ DL+ R ++ IGD R ED +R+LR RF A +ID Sbjct: 153 ALYYDPHTEEVIDYHNGVQDLKKRQVRIIGDPAQRYREDPVRMLRAVRFAAKLN-GSIDP 211 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 ++ + + R++ E+ KLL + ++ + + Sbjct: 212 ATRKPIGTMAPLIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253 >gi|254482604|ref|ZP_05095843.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214037295|gb|EEB77963.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 432 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 24/255 (9%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K DS + ++S L ++ +VGGAVRD L+ + +D DIAT P+ V +F Sbjct: 11 ISRKNISDS-ALKVMSRLRSQGHQAYLVGGAVRDLLLGSNPKDFDIATDATPEEVHGLFR 69 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAK-----------------V 107 +R + + + ++ ++TT R + Sbjct: 70 NSRI----IGRRFRIVHVRFGREIIEVTTFRGHHEGGNEASPATGGNHSRQSDKGLLLRD 125 Query: 108 VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 + D++RRD T+NALY D + +V D+V GL DL R I IG+ R ED +R Sbjct: 126 NVYGTLEEDAVRRDLTVNALYYDSGKFEVFDHVNGLTDLEKRQICIIGEPAVRYREDPVR 185 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A +I+ + A L+ + S R++ E KL + + + Sbjct: 186 MLRTVRFAAKLN-FDIEKNTAKAIPACAALLREIPSARLFDEFLKLFLSGYAAATLEQLL 244 Query: 227 NGGIFKEIFLDVQEI 241 + + +F + + Sbjct: 245 EHDLLQFLFDETSHL 259 >gi|90406862|ref|ZP_01215054.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Psychromonas sp. CNPT3] gi|90312099|gb|EAS40192.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Psychromonas sp. CNPT3] Length = 448 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 19/239 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L+ ++ +VGGAVRD L+ L +D DI T P+ + +F R Sbjct: 19 DDNALKVLYRLHNAGFRALLVGGAVRDLLLGLKPKDFDITTNATPEEIKALFRNCRL--- 75 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-------------ITDGRYAKVVFTRDWKADSL 118 + I+ ++ ++ T R G + + D+ Sbjct: 76 -IGRRFRLAHILFGREVIEVATFRGPHDQQSAQDKQKVKQSQGGMLLRDNVYGSLEEDAE 134 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NALY D + D+ G+ DL++R + IGD R ED +R+LR RF A Sbjct: 135 RRDFTVNALYYDIADFALYDFCNGMQDLKDRKLTLIGDPDVRYREDPVRMLRAIRFTAKL 194 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I + + L+ + + R + E+ KLL + L + + + +F Sbjct: 195 -DLEISPECAEPIRRLANLLQDIPAARHFDEVIKLLLSGQGLQTYRLLKEYKLLQVLFP 252 >gi|323357972|ref|YP_004224368.1| tRNA nucleotidyltransferase/poly(A) polymerase [Microbacterium testaceum StLB037] gi|323274343|dbj|BAJ74488.1| tRNA nucleotidyltransferase/poly(A) polymerase [Microbacterium testaceum StLB037] Length = 479 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 90/436 (20%), Positives = 155/436 (35%), Gaps = 57/436 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + + + IVGG VRD+L+ D D T PD ++ + Sbjct: 20 VATLARVFADAGRDLAIVGGPVRDALLGRLTHDFDFTTDARPDEILALVKPVSSVQWDVG 79 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI + +ITT R+D R V F +AD RRDFT+NA+ Sbjct: 80 RDFGTIGARVHGEQVEITTYRADSYDGVTRKPTVEFGDTLEADLTRRDFTVNAMALRVPA 139 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG+ DL ++ D +D LR+LR RF + E +ID D L A + Sbjct: 140 RTLVDPTGGVEDLIAGRLRTPIDPAVSFGDDPLRMLRGARFASQL-EFDIDPDTLDAIAE 198 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 ++ L+I+S ER+ SE+ +LL+ +P+ I + + E +V + L+ Sbjct: 199 LRQTLQIVSPERVQSELVRLLQTDDPVRGIRVLVETRLIDEFLPEVPALRLEVDEHHHHK 258 Query: 245 ----------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM------------- 281 + + +E ++ + D LR L+ K + + Sbjct: 259 DVYEHSLTVLRQAIALEKQRTPDAAPDVPLRLAALLHDIGKPATRRLEPGGGVTFHHHDI 318 Query: 282 ------AKKFSLPR------EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 K+ R + LI F + + Y+ + +L Sbjct: 319 KGARMARKRLQALRFDAATTTVVSRLIELHLRFFGYAEGAWTDAAVRRYVRDAGDELERL 378 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPG 378 I + + DI L G+ + + GI PG Sbjct: 379 HILTRADVTTRNKRKAQRLASAYDDIESRIATLREQEEIDAIRPELDGNRIQEVLGIAPG 438 Query: 379 KKVGNILVHCKQEWIN 394 ++VG ++ Sbjct: 439 REVGEAYRFLLDLRLD 454 >gi|308389017|gb|ADO31337.1| putative poly(A) polymerase [Neisseria meningitidis alpha710] gi|325129986|gb|EGC52781.1| poly(A) polymerase [Neisseria meningitidis OX99.30304] gi|325135941|gb|EGC58551.1| poly(A) polymerase [Neisseria meningitidis M0579] gi|325202368|gb|ADY97822.1| poly(A) polymerase [Neisseria meningitidis M01-240149] gi|325207880|gb|ADZ03332.1| poly(A) polymerase [Neisseria meningitidis NZ-05/33] Length = 453 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R + G ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLG-FDLSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|203454630|ref|YP_002224946.1| gp28 [Mycobacterium phage Myrna] gi|197311678|gb|ACH62036.1| gp28 [Mycobacterium phage Myrna] Length = 397 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 89/411 (21%), Positives = 162/411 (39%), Gaps = 40/411 (9%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +D + + + + K +VGG+VRD L+ + +D D T LP + I Sbjct: 1 MNDQLMRELGERFARADRKLFLVGGSVRDLLLAKTPKDFDFTTDALPKEIQGILRDWADA 60 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 V +GTI +ITT+R D GR +VVFT D D +RRDFTINA+ Sbjct: 61 VWDVGARFGTIAAQKDGFEIEITTMRHD--GPGRKPEVVFTDDIIEDLVRRDFTINAMAM 118 Query: 130 DQQGK--------VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 + VID G DL +K + ED LR++R RF A K Sbjct: 119 QVDAEGLHQGVSDVIDPFNGRTDLFLDLLKTPAEPWKTFTEDPLRMMRAARFAAQLDFKV 178 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 D++ L + + ++ +K +S+ERI +E++K++ A++ + + I + I + Sbjct: 179 GDTESL-SILSNRELIKSVSAERIAAELDKIVAAQHSFKGWSALLHSRILEIILPE---- 233 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFI--VLISWQDKKSILSMAKKFSLPREIRYF---LI 296 I A + D +R+ ++ + + ++ K+ E R L+ Sbjct: 234 -------FIGAPVAWVASTDINVRWADTLITAGVKPDQVPAIGKRLKWSNERRQSVTNLV 286 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 ++ + S E++++ G ++ + + + + + Sbjct: 287 TWVERFALVQDWSWTEVRRVVAAAGPQLDGLLALLDDDILKGRVE-----------TLLA 335 Query: 357 HWKKPLFPLTGDD-VVKYGIPPGKKVGNILVHCKQEWI-NSSFQLSQEDLH 405 P LTG + ++ G+ PG VG + + L Sbjct: 336 TEGHPKPLLTGKEILLALGVKPGPVVGRAQQFLWDVRLREGNISKHHAALL 386 >gi|86142260|ref|ZP_01060770.1| tRNA nucleotidyltransferase [Leeuwenhoekiella blandensis MED217] gi|85831012|gb|EAQ49469.1| tRNA nucleotidyltransferase [Leeuwenhoekiella blandensis MED217] Length = 476 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 84/454 (18%), Positives = 164/454 (36%), Gaps = 66/454 (14%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSK--TRYKVIPT 73 I + ++ ++GG VRD L+ +DIDI + + + Sbjct: 17 TITQASEELNLETYVIGGYVRDFLLKRGSAKDIDIVALGSGIELAERVASLLPHKPKVQV 76 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132 +YGT + + R + + VV + D RRDFTINAL Sbjct: 77 FKTYGTAMLRDGDIEVEFVGARKESYNENSRNPVVENGSLEDDQNRRDFTINALALSLNK 136 Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 G +ID GL DL I+ D +D LR++R RF + I+ L A Sbjct: 137 STLGNLIDPFEGLVDLEREIIRTPLDPDITYSDDPLRMMRAIRFATQL-DFMIERKSLEA 195 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K +KI++ ERI E+NK++ +K P + + G+ I ++ + + + Sbjct: 196 ISANKDRIKIITKERIVDELNKIMLSKTPSKGFLLLEKTGLLNYILPELTALKGIEEKEG 255 Query: 250 IEAEQVFEWKI-----------DSLLRFIVLISWQDK----------------------K 276 + + F + D LR+ L+ K K Sbjct: 256 QKHKDNFYHTLEVVDNISENTDDLWLRWAALLHDIGKAPTKRFHKKIGWTFHGHEFVGSK 315 Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------IKKLFYLYGDKVMIAKLK 330 + + K+ +P + + ++ + + +++L + GD L+ Sbjct: 316 MVFKLFKRLKMPLNEKMKFVQKLVLMSSRPIVIAEDFVTDSAVRRLIFDSGD-----YLE 370 Query: 331 IFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGIP 376 + L ++T ++ + + + H + P++G++++ + + Sbjct: 371 DLMTLCEADITTKNPKRYRKYHNNFKTVRQKIEEVEERDHVRNFQPPVSGEEIMSTFDLQ 430 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 P K++G I K+ + E H + K Sbjct: 431 PSKEIGIIKEAIKEAILEGEIPNEYEAAHAFMLK 464 >gi|110598827|ref|ZP_01387084.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [Chlorobium ferrooxidans DSM 13031] gi|110339558|gb|EAT58076.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [Chlorobium ferrooxidans DSM 13031] Length = 513 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 89/439 (20%), Positives = 164/439 (37%), Gaps = 58/439 (13%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKI-----I 83 +VGG VRD LM DIDI P + + + T ++ Sbjct: 62 YLVGGYVRDLLMQRPCSDIDIMVIGDPVPFAGTVQRELHGRNFVLFERFRTAQLELSDPQ 121 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYV 139 ++ R + V D RRDFTINAL D + +ID+ Sbjct: 122 HGSFKVELVGARKESYNPDSRKPVTLIGTLDDDLSRRDFTINALAMVLNRDGRNDIIDHF 181 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKI 199 GL+DLR+ +K D +D LR++R RF A K + D L A + ++I Sbjct: 182 NGLDDLRSGILKTPLDPEQTFSDDPLRMMRAARFAAQLDFKLL-PDVLAAMKSMHERIRI 240 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE- 257 +S ER+ E K+++A P ++ +Y G+ EI DV + ++Q+ + + +F Sbjct: 241 VSIERVSHEFFKIMQASRPSVGLIILYETGLLHEILPDVAAMAGIEQVDGMGHKDTLFHT 300 Query: 258 ---------WKIDSLLRFIVLISWQDKKSILSMAK----------------------KFS 286 + LR L+ K + K + Sbjct: 301 FQVIDNLAAHSDNLWLRVAALLHDIAKPATKRFCKSAGWSFHGHDAVGVRIVGKIFRQMR 360 Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTC 346 P + ++ + LS EI L+ + L ++T ++ Sbjct: 361 WPLDPLDYVQKMVRLHHRPIPLSKEEISDSAIRRLMFDAGEDLQDLMNLCRADVTSKNPR 420 Query: 347 FILQVLSDIIHWKKPL-------------FPLTGDDVVK-YGIPPGKKVGNILVHCKQEW 392 ++Q++S+ + +K + P++G+D+++ G+ G+ VG I + Sbjct: 421 KVIQIMSNFNNVEKKIAEVGEKDLLARWRPPISGEDIMETLGLGEGRVVGMIKKKMENAV 480 Query: 393 INSSFQLSQEDLHHLLRKL 411 I+ +E ++++ Sbjct: 481 IDGLIPYDREAALAYIKEI 499 >gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|300076352|gb|ADJ65751.1| tRNA nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 233 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 37/316 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ VGGAVRD L+ L V+D D + P++++ + + K P + T + Sbjct: 2 KTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPHTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F + D RRD TINA+ D+ G ++D G Sbjct: 57 ---EYALARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 D+ R + + DA +ED +RILR RF A + + + + L+ + + + L Sbjct: 114 ADIAARVFRHVSDA---FIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+++ L + P + G + I + LD L V + E+ + +I Sbjct: 171 VPERVWQELSRGLMEQKPSRMFEVLRACGALQRILPE-----LDALWGVPQPEK-WHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++++ W + A+ F+LP + + K + PE+ + + Sbjct: 225 DTGVHVMLVVDW-------AAAQGFTLPIRFAALM------HDLGKGTTPPEMWPRHHGH 271 Query: 321 GDKVMIAKLKIFLALH 336 + ++ L Sbjct: 272 EARSERLAEQVCARLK 287 >gi|325285000|ref|YP_004260790.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulophaga lytica DSM 7489] gi|324320454|gb|ADY27919.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulophaga lytica DSM 7489] Length = 471 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 82/466 (17%), Positives = 173/466 (37%), Gaps = 57/466 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRV 59 M D + I + S ++GG VRD L+ + +DID+ + Sbjct: 1 MTQDNYKDAIKDPIFLVIAEAAAELNVASYVIGGFVRDFLLKRGTPKDIDVVAVGSGIEL 60 Query: 60 MRIFSKTR--YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 + + + ++GT + + R + + +V + D Sbjct: 61 AQKVASKLPTNPKVSVFKNFGTAMLKYNDLELEFVGARKESYHEDSRKPIVENGSLEDDQ 120 Query: 118 LRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 RRDFTINA+ + G+++D G+NDL N+ IK + +D LR++R RF Sbjct: 121 NRRDFTINAMAISLNKNTYGQLLDPFNGINDLANKIIKTPLEPGVTYSDDPLRMMRAIRF 180 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + NI+ ++ + K + I+S ERI E+NK++ + P ++ + Sbjct: 181 ATQL-QFNIEEKSFLSITENKDRINIISKERIVDELNKIMNSSKPSIGFALLHKSKLLPF 239 Query: 234 IFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDK------- 275 I ++ + D +E D+L LR+ L+ K Sbjct: 240 ILPELSALQGIEEIEGHKHKDNFWHTLEVVDNISENTDNLWLRWAALLHDIGKAPTKKFH 299 Query: 276 ---------------KSILSMAKKFSLPREIRYF------LISFFNCNFNQKTLSIPEIK 314 K + + K+ +P + L+S ++ ++ ++ Sbjct: 300 KKKGWTFRGHEFIGSKMVYKLFKRLRMPLNDKMKYVQKMVLMSSRPIVLSEDFVTDSAVR 359 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF--------ILQVLSDIIHWKKPLFPLT 366 +L + G+ + + + N Q + + + + P+T Sbjct: 360 RLIFDAGENIEDLMILCEADITTKNTKKQRKYRNNFKLVRQKIVEVEERDQIRNFQPPVT 419 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLS-QEDLHHLLRK 410 G++++K + + P K++G + K+ ++ + E + +L+K Sbjct: 420 GEEIMKTFNLKPSKEIGILKEAIKEAILDGTIPNDYNEAYNFMLKK 465 >gi|294626060|ref|ZP_06704669.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664385|ref|ZP_06729745.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599662|gb|EFF43790.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605849|gb|EFF49140.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 455 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 146/381 (38%), Gaps = 49/381 (12%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT P+ V +F Sbjct: 32 TISRKDIS-PNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R+++ + +GR + + Sbjct: 91 RNCRL----IGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIED 146 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 147 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLA 206 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A +I++ + L + R++ EI KL + + + + + G+ + Sbjct: 207 AKLN-FDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLSAL 265 Query: 235 FLD------------VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW---------- 272 F + ++ + L+ L +V + S L+ W Sbjct: 266 FPESAAALKSNRSGALRAMVLEGLRNTD--ARVANDEPVSPAFLFALLLWPAFCRTLMGL 323 Query: 273 -----QDKKSILSMAKKFSLPREI-----RYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 Q + + A + +L + R F + Q S + K++F Sbjct: 324 QAQGVQPEDAQRRAADRVTLHQLERVALPRRFSLPMQEIWLLQTRFSSRQRKRVFRTLSH 383 Query: 323 KVMIAKLKIFLALHYNNLTHQ 343 A + + + H Sbjct: 384 PRFRAAFDFLVLRQFASADHA 404 >gi|325206323|gb|ADZ01776.1| poly(A) polymerase [Neisseria meningitidis M04-240196] Length = 453 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FDLSEETTAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|261379064|ref|ZP_05983637.1| poly(A) polymerase [Neisseria cinerea ATCC 14685] gi|269144521|gb|EEZ70939.1| poly(A) polymerase [Neisseria cinerea ATCC 14685] Length = 453 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 ++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AEKVICRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEVIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IG+A R ED +RILR R G + Sbjct: 157 PEKEEILDFHNGMADIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSQATAGP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + + +I +++ Sbjct: 216 IAESIGRLKHEPVARLFDEIMKLLFSGHARECLKRLKEFDVPDDIHPLFNALNI 269 >gi|117921514|ref|YP_870706.1| metal dependent phosphohydrolase [Shewanella sp. ANA-3] gi|166233879|sp|A0KZT1|CCA_SHESA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|117613846|gb|ABK49300.1| metal dependent phosphohydrolase [Shewanella sp. ANA-3] Length = 416 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 147/355 (41%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D P+++ ++ + K P + T + Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDFMVVGATPEQMQQLGYRQVGKDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINA+ D+ G + D G+ Sbjct: 57 ---EYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEAGNLYDPYHGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGLVASIKAKKGLK 198 D+ R ++ + A ED LR+LR RF A + + + + L+ + + L Sbjct: 114 ADINARQLRHVSAA---FAEDPLRVLRVARFAARFHDLGFEIAAETMALMQHMSQTEELT 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E++K L +P + G +F +++ L V + E+ + Sbjct: 171 ALTPERVWQEVDKSLGGPHPEVFFEVLRQCGALNILFPEIEA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ L ++ +L+ A + + +R+ + + K LS E + Sbjct: 225 EIDTGLHTML---------VLAQASSLTEEKAVRFAAL----VHDLGKALSPKEHWPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K + + L N + + ++SD F L + ++K Sbjct: 272 GHGQKGLPVIKSLCERLRIPN----EYRDLALLVSDQHQNVHQAFELRSETIIKL 322 >gi|332305449|ref|YP_004433300.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172778|gb|AEE22032.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 405 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 143/350 (40%), Gaps = 33/350 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V+D D + ++ + K P + T + Sbjct: 2 QVYLVGGAVRDKLLGRPVKDQDWVVVGASEADMLAQGYQQVGKDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA + D LRRD T+NA+ D +G +ID G Sbjct: 57 ---EYALARTERKTGQGYAGFECDTSTSVTLEQDLLRRDLTVNAMAMDDKGAIIDPFNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + DA ED LR+LR RF A Y ++ L+A+I L Sbjct: 114 QDLKNRVLRHVSDA---FEEDPLRVLRVARFAARYASYGFTIADETKALMANITRSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS+ER+W E K L P + G K F + LD L + + + Sbjct: 171 HLSAERVWVETAKSLLEDTPQVYFETLRECGALKVWFPE-----LDCLWGIPNPAK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKF-SLPREIRYFLI--SFFNCNFNQKTLSIPEIKK 315 +ID+ + ++++ Q + ++ +F +L ++ L + + + + L + I Sbjct: 225 EIDTGVHSMMVLE-QSVRVSNKLSVRFAALVHDLGKGLTDPALWPSHKGHEKLGLAPINA 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362 L L + ++ ++++ H I L W+KP Sbjct: 284 LCERVKVPNDCRDLALLMSEFHSHVHHAFKLKPATINDFLDKCDVWRKPE 333 >gi|325203914|gb|ADY99367.1| poly(A) polymerase [Neisseria meningitidis M01-240355] Length = 445 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 33 AENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 89 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 148 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G ++ + Sbjct: 149 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FDLSEETAAP 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 208 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 261 >gi|319778440|ref|YP_004129353.1| Poly(A) polymerase [Taylorella equigenitalis MCE9] gi|317108464|gb|ADU91210.1| Poly(A) polymerase [Taylorella equigenitalis MCE9] Length = 451 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 10/240 (4%) Query: 7 HKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT 66 + + I + +L +S IVGGAVRD ++ + +D D+AT P + +F + Sbjct: 30 ERRLVSRNAIKVCEVLRDHGYQSFIVGGAVRDLMLGKAPKDFDVATNATPLEIKPLFRRA 89 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLRS----DLITDGRYAKVVFTRDWKADSLRRDF 122 + + ++ + + +T R+ DGR + D RRDF Sbjct: 90 LI----IGRRFKLVHVVFGPEIIETSTFRTSGSQPEDNDGRILFDNNYGTIETDVDRRDF 145 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TINALY D V D+ G+ D++N I+ IGD R ED +R+LR RF G K Sbjct: 146 TINALYYDPISETVYDFHNGIKDIKNLQIRMIGDPEKRYREDPVRMLRAIRFAGKLGAK- 204 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + + RI+ E KLL + + I + + K +++I Sbjct: 205 FAPSTYEPIKRLSHLISNVPDSRIFDETYKLLTCGDSIYCIQQLRQLQLDKGTLPLLEKI 264 >gi|307637329|gb|ADN79779.1| tRNA nucleotidyltransferase [Helicobacter pylori 908] gi|325995920|gb|ADZ51325.1| tRNA nucleotidyltransferase [Helicobacter pylori 2018] gi|325997514|gb|ADZ49722.1| Polynucleotide adenylyltransferase [Helicobacter pylori 2017] Length = 402 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 101/400 (25%), Positives = 161/400 (40%), Gaps = 22/400 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + L + + K + +VGG VRD LM ++ +D D+ + L + + K ++V+ Sbjct: 5 EEGLKELFDIYEKSPHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVL 64 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 T I +GTI + + ++ITT R + I + ++VF+ D RRDF++NA+ Sbjct: 65 ETGIKHGTITALKNHQSYEITTFRMEKGHIKHRKPKELVFSARLTDDLKRRDFSMNAIAY 124 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID G + + N+TI+ +G A R ED LRILR RF A G K I + A Sbjct: 125 SPTKGLIDPFKGRSAIENQTIECVGGARLRFFEDALRILRALRFSATLGFK-IAASTKRA 183 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 K LK LS ER+ SE+NKLL KN ++EI V + ++ L + Sbjct: 184 VFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKE------YQEILELVIQEKIENLGFL 237 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 A E LR + Q + P++ C+ + Sbjct: 238 KNAPLNLE------LRLLGFFKHQKS------LENLRYPKKTCVLFSKAKECHKAFFNIH 285 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 K D F AL + + ++ +KK L G Sbjct: 286 SKTGLKFLLKNYDLEPFNLALDFYALENPKHALKIKGLLKEIFDSNEPFKKEHLALKGGA 345 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + G K +G IL C I + + E L ++ Sbjct: 346 LQSLGYQHQK-IGEILNACLNSVIENPKNNALEWLIEWVK 384 >gi|289209207|ref|YP_003461273.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix] gi|288944838|gb|ADC72537.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix] Length = 461 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 19/248 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L ++C+VGG VRD L+ +D DIAT PD+V +F R Sbjct: 32 DDNALKVLYRLRDAGYRACLVGGGVRDLLLGREPKDFDIATDATPDQVRGLFRNCRL--- 88 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD------------GRYAKVVFTRDWKADSLR 119 + ++ ++ ++ T R+ D GR + + D++R Sbjct: 89 -IGRRFRLAHVLFGREVIEVATFRAPHDEDDDNDGQVALSEEGRILRDNRYGTIEQDAVR 147 Query: 120 RDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDA-HHRILEDYLRILRFFRFFAHY 177 RDF++NALY D V+DY GG+ DLR ++ IGD R+ ED +R+LR RF A Sbjct: 148 RDFSVNALYYDIDDFSVLDYTGGVEDLREGVLRLIGDDVETRLREDPVRMLRAVRFSAKL 207 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G + I + + ++ ++ R++ E+ KL + + + + G+F +F + Sbjct: 208 GLR-IAPEVEAGIRELAGLMQTVAPARLFDEVIKLFHSGAAVTCLDELERFGLFAPMFPE 266 Query: 238 VQEISLDQ 245 E D Sbjct: 267 AAECFADP 274 >gi|294792766|ref|ZP_06757913.1| CCA-adding enzyme [Veillonella sp. 6_1_27] gi|294456665|gb|EFG25028.1| CCA-adding enzyme [Veillonella sp. 6_1_27] Length = 494 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 95/473 (20%), Positives = 171/473 (36%), Gaps = 66/473 (13%) Query: 2 VSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + +VQ IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ Sbjct: 14 IRLVQKGACMMEQANRILTVLEEAGHEAYIIGGAVRDMLMHQKPHDFDIVTSARPDTVIE 73 Query: 62 IFSKTRYKVIP-TSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSL 118 + + S+G + K ++I T R++ R ++ + + D L Sbjct: 74 VLRGHDIQTTDLVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVL 133 Query: 119 RRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 RRDFT+N + ++ G+VID VGG D++++ ++ IG+A R ED LR+ R RF A Sbjct: 134 RRDFTVNGMAMNRYGEVIDLVGGRRDIKHKMLRTIGNAQERFEEDALRLFRACRFVAKL- 192 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK------ 232 + D L A KA + LS ER+ +EIN+L+ + + + + Sbjct: 193 DFLPSKDLLEAMPKAFHRVPGLSLERVRNEINRLMLEPAVAKGLDVLVQSRLAECSCRVV 252 Query: 233 --------EIFLDV-------QEISLDQLSQVIEAEQVF-EWKIDSLLRFIVLISW---- 272 I ++ QE + V + D +LR+ L+ Sbjct: 253 ENGTAREVPILPELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLVLRWGALLHDVAKG 312 Query: 273 -------------------QDKKSILSMAKKFSLPREIRYFLISFFNCNF---------- 303 + ++ + P+ + + Sbjct: 313 MPAVRAIINGRLTDRGHDTLGAEMAETLLTRLGYPKTFVKRVAWIVKNHMRFHYFVQNGD 372 Query: 304 -NQKTLSIPEIKKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 N+K E + + + A K+ A + + + Sbjct: 373 ANEKKWLRKEARSGEFRDSQIMRTAWEQLAKVCAADVLGCGKPYSSTDGTLAFGECMADL 432 Query: 360 KPLFPLTGDDV--VKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 P+ D+ + I GK+VG L + + N + L+ L Sbjct: 433 SLEMPVHTKDLNYDERVIKLAGKQVGEGLQYLLGQVQNGVIPNKPDALYDALD 485 >gi|254804714|ref|YP_003082935.1| poly(A) polymerase [Neisseria meningitidis alpha14] gi|254668256|emb|CBA05110.1| poly(A) polymerase [Neisseria meningitidis alpha14] Length = 453 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FDLSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|284049150|ref|YP_003399489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidaminococcus fermentans DSM 20731] gi|283953371|gb|ADB48174.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidaminococcus fermentans DSM 20731] Length = 481 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 88/469 (18%), Positives = 173/469 (36%), Gaps = 73/469 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI-PT 73 + ++ +L ++ +VGGAVRD L+ + D D+ T P+ ++R V+ Sbjct: 9 VKTVMDVLQARGFQAHVVGGAVRDMLLGRTPDDYDVVTNARPEEIIRTAEDAGIPVVSEL 68 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITDG---RYAKVVFTRDWKADSLRRDFTINALYAD 130 ++G + + + ++ R++ G R ++V + + + D RRDFTINAL D Sbjct: 69 GQNFGVVILRVERHGVEVAAYRNETYGSGDAHRPSEVWYCKTLEEDLSRRDFTINALAVD 128 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 Q+G + D GL+DLR R ++ +GD R ED LR+ R RF G D L A Sbjct: 129 QEGHITDCFHGLDDLRGRVLRTVGDPDRRFSEDALRMFRACRFVGQLG-FAPDPAILPAI 187 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE--------------IFL 236 + + + LS ER+ +E+NKLL + M G+ E I Sbjct: 188 GRNLQKVPGLSLERVRTELNKLLMGTYAGEGMDLMVKSGLAAESCRVRRKGQYETVPILP 247 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSL--------LRFIVLISWQDK------------- 275 ++ + + V++ +L + + +L+ K Sbjct: 248 ELTHLVGLGQNPQFHPYDVWKHTAVALDKGDRSLEVGWGILLHDVAKGLEGVRGINREGQ 307 Query: 276 -----------KSILSMAKKFSLPREIRYFLISFFNCNFN----------QKTLSIPEIK 314 + ++ LPRE+ + + + + + + Sbjct: 308 PCDHGHEAVGAALARQILERLQLPREVVDRVAWLVKNHMHFGFISAQEDSKTWHWLRKEA 367 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF-----------ILQVLSDIIHWKKPLF 363 + + +K M K A+ ++ + L ++ ++ Sbjct: 368 RSGHFRLNKEMAEAFKQLTAVCVADVAATNAAQNDVIHAQMYGKRLVKMAYLMPVHTSDL 427 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +G D + G P ++ ++ + + + E L RK + Sbjct: 428 DFSGKDALTLGAAP-AQLKELMPVLLRRVQDRMLENDPEQLALAARKWL 475 >gi|119944355|ref|YP_942035.1| poly(A) polymerase [Psychromonas ingrahamii 37] gi|119862959|gb|ABM02436.1| poly(A) polymerase [Psychromonas ingrahamii 37] Length = 459 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 20/255 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L+ ++ +VGG VRD L+ L +D DI T P+ V +F R Sbjct: 32 DENALKVLYRLHNAGFRALLVGGGVRDLLLGLKPKDFDITTNATPEEVKALFRNCRL--- 88 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-------------GRYAKVVFTRDWKADSL 118 + I+ ++ ++ T R D G + + D+ Sbjct: 89 -IGRRFRLAHILFGREVIEVATFRGHHDDDNGQDAQKVKQSKAGMLLRDNVYGSLEEDAE 147 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NALY D + D+ G+ DL+ R + IGD R ED +R++R RF A Sbjct: 148 RRDFTVNALYYDIADFAIYDFCNGMKDLQERRLTLIGDPEVRYREDPVRMIRAIRFSAKL 207 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 + I + + L+ + + R + E+ KLL + L + + + +F Sbjct: 208 -DLTISEECAEPIRRLAPLLQDIPAARHFDEVIKLLLSGQGLVTYRLLKEYKLLQVLFPI 266 Query: 238 V-QEISLDQLSQVIE 251 + ++ D+ +Q+IE Sbjct: 267 LFKDGEDDKATQLIE 281 >gi|330443816|ref|YP_004376802.1| poly A polymerase [Chlamydophila pecorum E58] gi|328806926|gb|AEB41099.1| poly A polymerase [Chlamydophila pecorum E58] Length = 414 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 10/249 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K + IVGG +RD L+ + +D DI+T+ P+ + +F I Sbjct: 28 SPQALSVVKALRKAGYTAYIVGGCIRDLLLGTTPKDFDISTSAKPEEIKALFKNC----I 83 Query: 72 PTSISYGTIKIICRKKYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + I + +++T RS D TD K + D LRRDFTIN L+ D Sbjct: 84 LVGKRFRLAHIRFANQIIEVSTFRSGDTETDALITKDNLWGTPEEDVLRRDFTINGLFYD 143 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL N ++ IGD R +D +R+LR + + + + + A Sbjct: 144 PAEEAIIDYTGGMSDLSNHYLRTIGDPFMRFKQDPVRMLRLLKILSRF-QFTVAPQTQEA 202 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + + L S R++ E+ K+L + + + + +F + + +L++V Sbjct: 203 LLACHRELTKSSQARVFEELIKMLNSGVSARFFRLLKENHLLEILFPYMDKAF--RLNKV 260 Query: 250 IEAEQVFEW 258 +E EQ +++ Sbjct: 261 LE-EQTYQY 268 >gi|325132016|gb|EGC54714.1| poly(A) polymerase [Neisseria meningitidis M6190] gi|325137770|gb|EGC60345.1| poly(A) polymerase [Neisseria meningitidis ES14902] Length = 453 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETTAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|88802647|ref|ZP_01118174.1| putative polyA polymerase [Polaribacter irgensii 23-P] gi|88781505|gb|EAR12683.1| putative polyA polymerase [Polaribacter irgensii 23-P] Length = 473 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 84/451 (18%), Positives = 174/451 (38%), Gaps = 62/451 (13%) Query: 12 DSDLINILSLLNKGED-KSCIVGGAVRDSLMNL-SVQDIDIATT----ILPDRVMRIFSK 65 SD+ I+S +K +S ++GG VRD + + +DIDI L ++V + Sbjct: 11 SSDIFKIISEASKHLHIESYVIGGFVRDFFLKRGTAKDIDIVAIGSGIALAEKVASLLPN 70 Query: 66 TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + +YGT + + + R + ++ VF + D RRDFTIN Sbjct: 71 K--PKVQIFKTYGTAMLRYKDIEIEFVGARKESYSEESRNPEVFEGTLQEDQNRRDFTIN 128 Query: 126 ALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 AL G ++D G+ DL+N I+ + +D LR+LR RF Sbjct: 129 ALALSLNEENFGALLDPFHGMEDLKNACIRTPLNPAITYSDDPLRMLRAIRFATQLN-FT 187 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 I+ LVA K + L+I++ ERI EINK++ + P + + + ++ ++ ++ Sbjct: 188 IEEASLVAIEKNSERLEIITRERIVDEINKIMASTKPSIGFLLLEQTNLLSQLLPELIDL 247 Query: 242 ----------SLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDK--------------- 275 D +E + + E D LR+ L+ K Sbjct: 248 KGVEEVEGQKHKDNFYHTLEVVDNISENTEDIWLRWSALLHDIGKAPTKRFSKKVGWTFH 307 Query: 276 -------KSILSMAKKFSLP-----REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 K + + K+ +P + ++ ++ ++ +++L + GD Sbjct: 308 SHEFVGSKMVYRLFKRLKMPLNNKMKFVQKMVLLSSRPIVLATDVTDAAVRRLVFDAGDD 367 Query: 324 VMIAKLKIFLA---------LHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV-KY 373 + + + + A + + ++ + + + P++G +++ + Sbjct: 368 IH-SLMTLCEADITTKNPKKFKRYHQNFEVVRLKIKEVEERDRVRNFQPPVSGQEIIAAF 426 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + P K++G I K+ + ++ Sbjct: 427 NLKPCKEIGQIKEAIKEAILEGQIPNEHKEC 457 >gi|303232267|ref|ZP_07318966.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Atopobium vaginae PB189-T1-4] gi|302481677|gb|EFL44738.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Atopobium vaginae PB189-T1-4] Length = 480 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 84/359 (23%), Positives = 143/359 (39%), Gaps = 19/359 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++ L + + GG VRD L+N DID+AT ++ V T Sbjct: 22 AQRVIAALEHAGYECWVAGGFVRDCLLNRPFCDIDLATNAHWQTTKKLLEAAHIHVFETG 81 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ + +ITT R ++ +D R+ VVF +D RRDFTINAL +Q Sbjct: 82 VKHGTLTAVVDGAAVEITTFRQEVGYSDHRHPDTVVFVTSITSDCARRDFTINALAWRKQ 141 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++D GG+ DL R ++ +GD H R ED LR++R RF A Y + I+ A Sbjct: 142 DGLVDCFGGVRDLNARLVRCVGDPHTRFSEDPLRLVRALRFSATYAFR-IEEATFAALCS 200 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI--FKEIFLDVQEISLDQ----- 245 + ++ +RI E+ KL+ A++ + +F DVQ L Sbjct: 201 DIHDIAYVAPQRIAQEVKKLVACDRFAYALLCYPSCFAVCLSALFRDVQAAPLTSSQVEY 260 Query: 246 -------LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 + E + + R + ++ S M + S P+ Sbjct: 261 IAACCSLYVVLSETKGNLSCYVAIWQRALARMNLVHSHSFSRMCAQLSYPKNTMRRASLC 320 Query: 299 FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + L + D + A++++ L +TH ++L D +H Sbjct: 321 VAVVDALEALCGQLAASSCVSHSD--VAARVQLCLFDMSPRITHMSRAYLLSCAYDAVH 377 >gi|45600186|gb|AAS69672.1| polynucleotide adenyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 450 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 118/238 (49%), Gaps = 19/238 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + I+ LNK K+ IVGG VRD L+ +D D+ T P+++ +IF+ R Sbjct: 3 DEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRI--- 59 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW-----------KADSLRR 120 + + I+ R K +++T RS + D R K V +D+ + D+ RR Sbjct: 60 -IGRRFKIVHILFRGKVIEVSTFRS--LPDYRLGKAVEDQDYLIKRDNKFGTPQEDAARR 116 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFTIN+LY D + +IDYVGG D+RN+ ++ IGD ED +R+LR +F G Sbjct: 117 DFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKFAEILG- 175 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 NI+ A K K L+ SS R+ E NK+ M GI + +F + Sbjct: 176 LNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGILEVLFKE 233 >gi|21231215|ref|NP_637132.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768778|ref|YP_243540.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|188991892|ref|YP_001903902.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|21112860|gb|AAM41056.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574110|gb|AAY49520.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167733652|emb|CAP51857.1| polynucleotide adenyltransferase [Xanthomonas campestris pv. campestris] Length = 455 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 147/381 (38%), Gaps = 49/381 (12%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT+ P+ V +F Sbjct: 32 TISRKDIS-PNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATSATPEEVKALF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R+++ + +GR + + Sbjct: 91 RNCRL----IGRRFRLAHVVFGREIIEVATFRANIDDGSGDRELDNGRLVRDNVYGTIED 146 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 147 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A +I++ + L + R++ EI KL + + + + + G+ + Sbjct: 207 AKLN-FDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGAL 265 Query: 235 FLD------------VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW---------- 272 F + ++ + L+ L +V + S L+ W Sbjct: 266 FPESAAALKSNRSGALRAMVLEGLRNTD--ARVANDEPVSPAFLFALLLWPAFCRTLMGL 323 Query: 273 -----QDKKSILSMAKKFSLPREI-----RYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 Q + + A + +L + R F + Q S + K++F Sbjct: 324 QAQGVQPEDAQRRAADRVTLHQLERVALPRRFSLPMQEIWLLQTRFSSRQRKRVFRTLSH 383 Query: 323 KVMIAKLKIFLALHYNNLTHQ 343 A + + + H Sbjct: 384 PRFRAAFDFLVLRQFASADHA 404 >gi|313893117|ref|ZP_07826694.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442470|gb|EFR60885.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 472 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 96/462 (20%), Positives = 167/462 (36%), Gaps = 66/462 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + Sbjct: 3 EQANRILTVLEEAGYEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRGQGIQTTD 62 Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 S+G + K ++I T R++ R ++ + + D LRRDFT+N + Sbjct: 63 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAM 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ G+VID VGG D++++T++ IGDA R ED LR+ R RF A + D L A Sbjct: 123 NRFGEVIDLVGGCRDIKHKTLRTIGDAQKRFEEDALRLFRACRFVAKL-DFLPSKDLLEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIF 235 KA + LS ER+ +EI++L+ + + + + I Sbjct: 182 MPKAFHRVSGLSLERVRNEIDRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAREVPIL 241 Query: 236 LDV-------QEISLDQLSQVIEAEQVF-EWKIDSLLRFIVLISW--------------- 272 ++ QE Q V + D LR+ L+ Sbjct: 242 PELYHLVNLPQEKDFHQFDGWYHTLAVVSNTEPDLTLRWGALLHDVAKGMPTVRAVVNGR 301 Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNF-----------NQKTLSIPEI 313 + ++ + P+ + + N+K E Sbjct: 302 LTDRGHDTLGAEMTETLLTRLGYPKAFVQRVAWIVKNHMRFHYFVQNGDANEKKWLRKEA 361 Query: 314 KKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + + A K+ A + + + P+ D+ Sbjct: 362 RSGEFRDSQIMRTAWEQLAKVCAADVLGCGKPYASTDGTLAFGECMADLSLEMPIHTKDL 421 Query: 371 --VKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + I GKKVG L + + N + L+ L Sbjct: 422 NYDERVIKLAGKKVGEGLQYLLGQVQNGVIPNEPDALYDALD 463 >gi|258645720|ref|ZP_05733189.1| polyA polymerase [Dialister invisus DSM 15470] gi|260403089|gb|EEW96636.1| polyA polymerase [Dialister invisus DSM 15470] Length = 500 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 120/292 (41%), Gaps = 25/292 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + I++ L ++ VGG VRD L+ + D DI T+ P+ ++ + + +K + Sbjct: 29 DRNASAIINALENSGYEAYAVGGCVRDLLLAKAPHDWDITTSAKPEEIISVMGRNGWKTV 88 Query: 72 P-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTINALY 128 +GT+ ++ +++TT R++ + + F+ K D RRDFT+NAL Sbjct: 89 DGAGRRFGTVIVVINHIAYEVTTFRNEFYGQDSHRPENITFSSTLKEDLSRRDFTVNALA 148 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + G V DY G DL N+ ++ +G A R ED LR+ R RF + D + Sbjct: 149 LGRDGVVYDYFDGTKDLENKKLRTVGKAEERFREDALRLFRACRFIGQL-DFMADKSLVR 207 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI--------------FKEI 234 A + LS ER+ E+ KLL + + + G+ I Sbjct: 208 GMASAFDRVSGLSLERVREEVEKLLVSPFAARGLDLLVRTGLNECSCRIRENGRTEAVRI 267 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 ++ + V +Q K D + +++ +L A Sbjct: 268 LPELSHL-------VDLPQQKKFHKFDGWYHTLAVVNAAPPTLLLRWAALLH 312 >gi|21242528|ref|NP_642110.1| polynucleotide adenyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|21107981|gb|AAM36646.1| polynucleotide adenyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 455 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT P+ V +F Sbjct: 32 TISRKDIS-PNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALF 90 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R+++ + +GR + + Sbjct: 91 RNCRL----IGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIED 146 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D++RRDFT NALY + V DY GG D++ R +K IGD R ED +R+LR R Sbjct: 147 DAIRRDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLA 206 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A +I++ + L + R++ EI KL + + + + + G+ + Sbjct: 207 AKLN-FDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGAL 265 Query: 235 FLD 237 F + Sbjct: 266 FPE 268 >gi|282890004|ref|ZP_06298538.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500096|gb|EFB42381.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 423 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 11/255 (4%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + H DSD + +L L + +VGG+VRD L+ + +D DI+T+ P+ + ++F Sbjct: 13 IDHAMI-DSDALYVLQRLRDAGYTAYLVGGSVRDLLIKQTPKDYDISTSAKPEEIKQLFQ 71 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 K+ + + I + K +++T RS + + D LRRDFTI Sbjct: 72 KSCLLI---GRRFRLAHIRFKHKIIEVSTFRSGDNEGDLILQDNQWGSPEEDVLRRDFTI 128 Query: 125 NALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 N L+ D +ID+VGG D++++ ++ IGD R +D +R++R +F A +G ID Sbjct: 129 NGLFYDPANHSIIDFVGGWEDIKHKLLRTIGDPAIRFKQDPVRMIRLLKFRARFG-FEID 187 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 +D A ++ +K + S R+ EI ++LE+ + + M GGI + +F L Sbjct: 188 ADSKKALVQCRKEIMKSSPARVLEEIFRMLESGSAASFFHLMAKGGILELLFP-----LL 242 Query: 244 DQLSQVIEAEQVFEW 258 Q EQ++ Sbjct: 243 TQFLATPAGEQIYRH 257 >gi|167622956|ref|YP_001673250.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella halifaxensis HAW-EB4] gi|167352978|gb|ABZ75591.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella halifaxensis HAW-EB4] Length = 425 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 51/335 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+NL V+D+D + P +++ + K P + T + Sbjct: 15 KIYLVGGAVRDKLLNLPVKDLDYMVVGATPKQMLALGYNQVGKDFPVFLHPKTQQ----- 69 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D +RRD TINA+ D++G + D G+ Sbjct: 70 ---EYALARTERKTAAGYGGFSVDAAPSVTLEQDLMRRDLTINAIAQDEEGNLYDPYQGI 126 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 + R+++ + DA +ED LR+LR RF A + ++ L+A I L+ Sbjct: 127 QAIEKRSLRHVSDA---FVEDPLRVLRVARFAARFHSLGFTVAPETLTLMAEISQSGELQ 183 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------LDQLSQVI 250 L++ER++ E+NK L NP + + G +F +++ + ++ + Sbjct: 184 ALTAERVYIELNKALATDNPQIFFQVLRDCGALAVLFPEIEALFGVPQPEKWHPEIDTGV 243 Query: 251 EA----EQVFEWKIDSLLRFIVLISWQDKK-------------------SILSMAKKFSL 287 EQV + D+ +RF L+ K I S+ ++F + Sbjct: 244 HTMMVLEQVAKLTDDNSVRFAALVHDLGKALSPKEHLPKHHGHGQKGLPLIKSLCERFRV 303 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 P E R + + + N ++ L L+ Sbjct: 304 PNEYRDLALLVSDQHQNIHKITELRADTLVKLFDK 338 >gi|332288744|ref|YP_004419596.1| hypothetical protein UMN179_00667 [Gallibacterium anatis UMN179] gi|330431640|gb|AEC16699.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 502 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 144/397 (36%), Gaps = 43/397 (10%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKT 66 + ++ L ++ +VGG +RD L++ + +D D+AT P+++ +IF + Sbjct: 67 PHLISRQALQVVEKLQNNGFEAYVVGGCLRDILLDKTPKDFDVATNARPEQIQKIFQRQC 126 Query: 67 RYKVIPTSISYGTIKIICRKKYFDITTLR-----------SDLITDGRYAKVVFTRDWKA 115 R + I+ ++ ++ T R + +G + + Sbjct: 127 RL----VGRRFRLAHILFGREIIEVATFRAAHDAINNDKLAKQSAEGMLLRDNVYGSLED 182 Query: 116 DSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT+NA Y D + K+ D+ G+ DLR + IGD R ED +R+LR RF Sbjct: 183 DAARRDFTVNAFYYDPRKDKLYDFFNGIKDLRAGRLMLIGDPTQRYQEDPVRMLRAIRFM 242 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A +D + L+ + + R++ E KLL+ +Y +F ++ Sbjct: 243 AKLDMF-LDKKCEQPIYQLASLLQNIPAARLFDESLKLLQTGKGEKTYQLLYKYQLFHQL 301 Query: 235 FLDV------------QEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMA 282 F + +++ + L E +I+ F + ++ I + Sbjct: 302 FPALIPFFTTNNDSFTEKMIVTALRSTDERIAD-HLRINPAFLFAAFFWYPLRERIEILK 360 Query: 283 --------KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF----YLYGDKVMIAKLK 330 +SL LI + T +I +I L G K Sbjct: 361 NEGGLNNFDAYSLASNDLLTLICQRVAILRRHTATIRDIWSLQLLFTKRTGKKPQATLEH 420 Query: 331 IFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 Y+ L + + + W + + Sbjct: 421 PKFRAAYDLLAMRAEIEQGECIELAAWWYEYQQSNSA 457 >gi|238789190|ref|ZP_04632978.1| Phosphatase [Yersinia frederiksenii ATCC 33641] gi|238722722|gb|EEQ14374.1| Phosphatase [Yersinia frederiksenii ATCC 33641] Length = 412 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 83/359 (23%), Positives = 153/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRDSL+NL V + D + P++++ + K P + + + Sbjct: 2 EIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVFLHP-----VSHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ G++ D G DL Sbjct: 57 EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSNGELFDPHHGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA ED LR+LR RF A + ++ L+A++ L L+ Sbjct: 117 TNRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTIAPETQSLMAAMAESGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L+ ++P + + G +F +++ + + A + + +ID Sbjct: 174 PERVWKETEKALKTQSPQIYFHVLRDCGALAVLFPEIERLF------GVPAPEKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L++A + S ++R+ + C+ K L+ E + +G Sbjct: 228 TGIHTLM---------TLAIAAQLSPDVDVRFAAL----CHDLGKGLTPKEFWPHHHGHG 274 Query: 322 D------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L++ L Y++L H +L++ I W+KP Sbjct: 275 PTGVKLVEQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333 >gi|308188139|ref|YP_003932270.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Pantoea vagans C9-1] gi|308058649|gb|ADO10821.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Pantoea vagans C9-1] Length = 421 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 153/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+NL V D D + T P+ ++ + + P + + R+ Sbjct: 13 KTFLVGGAVRDALLNLPVTDKDWVVTGSTPEVMLEQGYQQVGRDFPVFLHP-----VSRE 67 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R + G + D RRD TINA+ D+ G+++D G D+ Sbjct: 68 EYALARTERKNGKGYTGFVTWSAPDVTLEQDLQRRDLTINAIAQDENGELVDPYNGQRDI 127 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + +A ED LR+LR RF A + N ++ L+ + L L+ Sbjct: 128 AQRLLRHVSEA---FSEDPLRVLRVARFAARFAHLNFRIAPETQQLMQQMAESGELSNLT 184 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L ++NP + + G + +F ++ + I A + +ID Sbjct: 185 AERVWKETEKALSSRNPQVYFQVLRDCGALQVLFPELDNLF------GIPAPIKWHPEID 238 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L+MA S ++R+ + + K L+ PE+ + +G Sbjct: 239 TGVHTLM---------TLAMAAALSSEIDMRFATLF----HDVGKALTPPELWPSHHGHG 285 Query: 322 D------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKKPL 362 + + +L++ A+ + + Q ++ + I W+KP Sbjct: 286 LAGVPLVEALCQRLRVPNAIRDLALIVTEFHDIVHTIERQSAASLVALFDRIDAWRKPQ 344 >gi|269214303|ref|ZP_05986289.2| poly(A) polymerase [Neisseria lactamica ATCC 23970] gi|269210162|gb|EEZ76617.1| poly(A) polymerase [Neisseria lactamica ATCC 23970] Length = 469 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 11/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L + ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 59 AENVIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 114 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K D++RRDFT NALY D Sbjct: 115 RRFQIVHVMNGAETIEVTTFRGGAKVQQNARGRIMKDNTYGSIGEDAMRRDFTCNALYYD 174 Query: 131 QQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G K + + Sbjct: 175 PETEEILDFHNGVADIAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFK-LSEETAAP 233 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I + + + Sbjct: 234 IAESICRLKHEPVARLFDEIMKLLFSGHAAACLQVLRRFDC-TGIHPLLDALGV 286 >gi|261855731|ref|YP_003263014.1| poly(A) polymerase [Halothiobacillus neapolitanus c2] gi|261836200|gb|ACX95967.1| poly(A) polymerase [Halothiobacillus neapolitanus c2] Length = 453 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 73/370 (19%), Positives = 141/370 (38%), Gaps = 34/370 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +N+L L+ + +VGG VRD L + +D D+ T P++V +F R Sbjct: 24 SDHALNVLQRLHDQGYAAFLVGGCVRDLLRGMRPKDFDVVTDAKPEQVRSLFRHARI--- 80 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + +I ++TT R GR + D RRDF N Sbjct: 81 -IGRRFRIVHVIFGHDMIEVTTFRGGDEDGVRRSDQGRILRDNVFGSIDEDVWRRDFACN 139 Query: 126 ALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY + +++DYV G D+ ++ IG+ R ED +R+LR RF A G + Sbjct: 140 ALYYNFANAEIVDYVQGWQDIETGHLRIIGNPVTRYQEDPVRMLRAARFMAKLG-FTLTG 198 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241 D + A + + LK ++ R++ E K+ + A + + + +F + + Sbjct: 199 DSVSAIQECRDLLKSIAPARLFDESIKIFQGGYAWAAFLKLRELDLLGYLFPGLDNLLNR 258 Query: 242 SLDQLSQVIEA------EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295 D++S+++E E+V + + + W D L R ++L Sbjct: 259 DYDRISRLVERVLVGTDERVGHQLPVNPAFMLAGLLWAD------------LSRRREHWL 306 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYG-DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 + + I+ + + +++ AL + +++ Sbjct: 307 HQRVDSDVAFALAMDEVIESTVKQVAIPRRLTDLMRVIWALQPTLEQAAQGMSMGIAMTE 366 Query: 355 IIHWKKPLFP 364 + +K L Sbjct: 367 LKDQQKHLLA 376 >gi|257070277|ref|YP_003156532.1| tRNA adenylyltransferase [Brachybacterium faecium DSM 4810] gi|256561095|gb|ACU86942.1| tRNA adenylyltransferase [Brachybacterium faecium DSM 4810] Length = 471 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 74/457 (16%), Positives = 160/457 (35%), Gaps = 64/457 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKV 70 ++ + L + +VGG VRD+++ S D+D T+ P++ I + + Sbjct: 7 PEIHELGRLFAAAGHELALVGGPVRDAVLGRSSADLDFTTSARPEQTETILREWTHDGAI 66 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 +GT+ + +ITT R++ R +V + D RRDFT+NA+ Sbjct: 67 WDMGRDFGTLGGVRDGVKVEITTYRTESYDPSSRKPQVEYGDTLVGDLSRRDFTVNAMAV 126 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 + +D GL DL ++ +D LR++R RF A G + I+ Sbjct: 127 RLPSLEFVDPFDGLGDLARTLLRTPVAPGQSFSDDPLRMMRAVRFVAQLGFR-IEDATAD 185 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A + + + I+S+ER+ E+ KL+ +P + M G+ + ++ + L ++ + Sbjct: 186 AVEELAERITIVSAERVREELVKLMLGAHPRGGLELMTELGLAAHVLPELPALQL-EIDE 244 Query: 249 VIEAEQVFEWK----------------------IDSLLRFIVLISWQDKKSILSMA---- 282 + V++ D +LR L+ K + Sbjct: 245 HHHHKDVYQHTLTVLDQAIDLESPAGSGGPCEGPDLVLRLAALMHDVGKPATRRFEEGGV 304 Query: 283 ------------------KKFSLPREIRYFLISFFNCNFNQK-----TLSIPEIKKL--- 316 K + ++ + + + +++ Sbjct: 305 VTFRFHETVGAKMTTRRMKALTFDKDTTKKVARLVELHLRFHGYVDSPWTDSAVRRYVTD 364 Query: 317 ---FYLYGDKVMIAKLKIFLALHYNNL--THQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + ++ A + L + + + L++ + L G+ ++ Sbjct: 365 AGDLLQHLHRLTRADVTTRNRRKARTLARAYDELEARIDHLAEQEEIGRIRPDLDGNRIM 424 Query: 372 K-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + +PPG+ VG H + + + + L Sbjct: 425 EVLDLPPGRTVGEAYKHLLELRMEHGPLGEERAIEEL 461 >gi|308234520|ref|ZP_07665257.1| metal dependent phosphohydrolase [Atopobium vaginae DSM 15829] gi|328944115|ref|ZP_08241580.1| polyA polymerase family protein [Atopobium vaginae DSM 15829] gi|327492084|gb|EGF23858.1| polyA polymerase family protein [Atopobium vaginae DSM 15829] Length = 483 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 176/461 (38%), Gaps = 57/461 (12%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W I IL++L + IVGG VRD +M DIDIAT+ + R+F Sbjct: 18 MSFDWDVPYQAIRILTILESHGWSAWIVGGWVRDMVMRQPSHDIDIATSASWQQSERLFC 77 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDF 122 + V T +GTI ++ F++TT RS+ +D R+ V F + D RRDF Sbjct: 78 DSGCSVFRTGCKHGTITVVLDHYAFEVTTYRSETTYSDHRHPDSVTFVDSIQKDLARRDF 137 Query: 123 TINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 T NAL + K++D GG++D+ ++ +G A R ED LR+LR RF A + Sbjct: 138 TCNALAYHHERKLLDVYGGIDDIHAHILRCVGKADVRFAEDALRMLRALRFQATL-HFVL 196 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-- 240 D D A + L ++ ERI SEI KL + ++ + IF + +E Sbjct: 197 DRDIQTALDRHYLELLRIAPERIGSEIIKLSTSGLFFRSLRT--HEKIFTVCIPEFKELY 254 Query: 241 --ISLDQLSQVIEAEQVFEWKIDSLLRFIVL-------ISWQDKKSILSMAKKFSLPREI 291 + SQ AE I RFI + + Q + ++F++PR Sbjct: 255 KCLGDRDFSQYGNAETAITRCIPEDERFISMVLLISEALPVQVLQDFYKRLERFNVPRAQ 314 Query: 292 RYFLISFFNC-------------------------NFNQKTLSIPEIKKLFYLYGDKVMI 326 +I + + ++ I L YL K Sbjct: 315 TMRIIREHEVLHKLIKEYICCDSKAQNSGRQNCMDDVRRCSMRKELISGLHYLLLKKSPD 374 Query: 327 AKLKIFLALHYNNL--------THQDTCFILQVLSDIIHWKKPLFP-------LTGDDVV 371 +++F L + L I + + K+ P + G DV+ Sbjct: 375 PYIEMFHLLTFARLYCRTFMKVPTHACIRIEDLRYMLWCIKQQKVPLSCKELAINGYDVM 434 Query: 372 KY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + + GK V L H S+ L L+ L Sbjct: 435 EVCNMSAGKGVACTLEHVLALVQEGRLVNSRCVLRAYLKNL 475 >gi|109947332|ref|YP_664560.1| poly(A) polymerase [Helicobacter acinonychis str. Sheeba] gi|109714553|emb|CAJ99561.1| poly(A) polymerase [Helicobacter acinonychis str. Sheeba] Length = 385 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 108/394 (27%), Positives = 165/394 (41%), Gaps = 26/394 (6%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L K + +VGG VRD LM + +D D+ + L + K ++V+ T I +G Sbjct: 12 FDLYEKSHYELYLVGGCVRDCLMGFAPKDYDLTSNALVSESKELLLKHHFRVLETGIKHG 71 Query: 79 TIKIICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 TI + K ++ITT R + I R ++VF+ D RRDF++NA+ +I Sbjct: 72 TITALKNNKSYEITTFRVEKGHIKHRRPKELVFSAHLTDDLKRRDFSMNAIAYSPTKGLI 131 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D G N + NR I+ +G R ED LRILR RF A G K I+++ A K Sbjct: 132 DPFKGQNAIENRMIECVGKVRLRFFEDALRILRALRFGATLGFK-IETNTKRAVFACKDL 190 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 LK LS ER+ SE+NKLL KN I ++EI V + L+ + + A Sbjct: 191 LKHLSKERLQSELNKLLMGKNAYGVIKE------YQEILELVIQERLENVEFLKNAPFNL 244 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKK 315 E LR + + Q + P+++ C+ + E+K Sbjct: 245 E------LRLLGFFTHQKS------LENLRYPKKMIILFAKAKECHQAFLNIHNKTELKF 292 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L Y + L F AL + + ++ + +KK L G + Y Sbjct: 293 LLKNYDLEPFNLAL-DFYALENPKHALKIKGLLKEIFNANEPFKKEHLVLKGGALKNYQH 351 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 K+G IL C I + S E L ++ Sbjct: 352 Q---KIGEILNACLDLVITNPKNNSLEFLIEWVK 382 >gi|303228900|ref|ZP_07315711.1| HDIG domain protein [Veillonella atypica ACS-134-V-Col7a] gi|302516426|gb|EFL58357.1| HDIG domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 470 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 94/470 (20%), Positives = 174/470 (37%), Gaps = 67/470 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I +L++L + ++ I+GGAVRD LM++ D DI T+ P++V+ + + Sbjct: 2 EQAIRLLTILEEAGFEAFIIGGAVRDMLMHVKPHDFDIVTSARPEQVISVLGDANIETTG 61 Query: 73 T-SISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 S+G + I K++++ T R + R +V++ + D RRDFT+N + Sbjct: 62 IIGKSFGVVVAIVDGKHYEVATYRKERYGADSHRPEEVIYADTLEEDVKRRDFTVNGMAM 121 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ +VID VGG D++++ ++ IG+ R ED LR+ R RF A + D L A Sbjct: 122 NRYKEVIDLVGGRRDIKHKVLRTIGNPEERFQEDALRLFRACRFVAKL-DFLPDKSLLEA 180 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIF 235 KA + LS ER+ +E+++LL + + + + I Sbjct: 181 MPKAFHRVSGLSLERVRNELDRLLLESAVAKGLDVLVQSRLAECSCRIVENGEIKEVPIL 240 Query: 236 LDV-------QEISLDQLSQVIEAEQVF-EWKIDSLLRFIVLIS---------------- 271 ++ QE + + V E + D LR+ L+ Sbjct: 241 PELYHLVGLPQEKAFHEFDGWYHTLAVVSETEPDLTLRWGALLHDVAKGMPTIRQVINGR 300 Query: 272 -------WQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-----------QKTLSIPEI 313 + + + ++ + + +K EI Sbjct: 301 YTDRGHDNLGAEMAYDLLIRLGYNKKFASRVSWIVKNHMRFHFFVQNEEADEKKWMRKEI 360 Query: 314 KKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + + A L K+ A + + P+ D+ Sbjct: 361 RSGEFRDSQSMREAWLQLAKVCAADVLGCGKPYSVTDGTLAFGECMADLSLEMPVHTKDL 420 Query: 371 --VKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDL-HHLLRKLIASSQ 416 + G V L + Q+ NS + +DL L+ KL SS+ Sbjct: 421 NYDNRVLEACGDNVAKGLQYLMQQVQNSVVNNTPDDLYEALIHKLQRSSK 470 >gi|254672376|emb|CBA05629.1| poly(A) polymerase [Neisseria meningitidis alpha275] Length = 362 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R + G ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLG-FDLSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|303231232|ref|ZP_07317970.1| HDIG domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302514139|gb|EFL56143.1| HDIG domain protein [Veillonella atypica ACS-049-V-Sch6] Length = 470 Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 93/470 (19%), Positives = 173/470 (36%), Gaps = 67/470 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 I +L++L + ++ I+GGAVRD LM++ D DI T+ P++V+ + + Sbjct: 2 EQAIRLLTILEEAGFEAFIIGGAVRDMLMHVKPHDFDIVTSARPEQVISVLGDANIETTG 61 Query: 73 T-SISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 S+G + I K++++ T R + R +V++ + D RRDFT+N + Sbjct: 62 IIGKSFGVVVAIVDGKHYEVATYRKERYGADSHRPEEVIYADTLEEDVKRRDFTVNGMAM 121 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ +VID VGG D++++ ++ IG+ R ED LR+ R RF A + D L A Sbjct: 122 NRYKEVIDLVGGRRDIKHKVLRTIGNPTERFQEDALRLFRACRFVAKL-DFLPDKSLLEA 180 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIF 235 KA + LS ER+ +E+++LL + + + + I Sbjct: 181 MPKAFHRVSGLSLERVRNELDRLLLEPAVAKGLDVLVQSRLAECSCRVVENGAIKEVPIL 240 Query: 236 LDV-------QEISLDQLSQVIEAEQVF-EWKIDSLLRFIVLIS---------------- 271 ++ QE + + V E + D LR+ L+ Sbjct: 241 PELYHLVGLPQEKAFHEFDGWYHTLAVVSETEADLTLRWGALLHDVAKGMPTIRQVINGR 300 Query: 272 -------WQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-----------QKTLSIPEI 313 + + + ++ + + +K EI Sbjct: 301 YTDRGHDNLGAEMAYDLLIRLGYNKKFASRVSWIVKNHMRFHFFVQNEEADEKKWMRKEI 360 Query: 314 KKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + + A L K+ A + + P+ D+ Sbjct: 361 RSGEFRDSQSMREAWLQLAKVCAADVLGCGKPYSVTDGTLAFGECMADLSLEMPVHTKDL 420 Query: 371 --VKYGIPP-GKKVGNILVHCKQEWINSSFQLSQEDL-HHLLRKLIASSQ 416 + G V L + Q+ N + +DL L+ KL SS+ Sbjct: 421 NYDNRVLEACGDNVAKGLQYLMQQVQNGVVNNTPDDLYEALIHKLQRSSK 470 >gi|317126719|ref|YP_004100831.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Intrasporangium calvum DSM 43043] gi|315590807|gb|ADU50104.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Intrasporangium calvum DSM 43043] Length = 527 Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 140/455 (30%), Gaps = 61/455 (13%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + +VGG VRD+ + D+D T D ++ Sbjct: 68 LQELGQRFADRGHELALVGGPVRDAFLGRISPDLDFTTNASTDAILAAVVGWADAHWDIG 127 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI + + +IT+ R+D R +V+F + D +RRDFT+NA+ Sbjct: 128 REFGTIGLRKGDHHIEITSYRADTYDRTSRRPEVMFGDTLEGDLVRRDFTVNAMAIRLPS 187 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + +D GL DL R + +D LR++R RF + G + + A + Sbjct: 188 LEFVDVHDGLADLAARRLMTPAPPEESFADDPLRMMRAARFASQLG-FEVAVEVRAAMTE 246 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD-------- 244 L I+S+ERI E KLL + P + + + G+ E ++ + L+ Sbjct: 247 RAGTLAIISAERIRDEFTKLLLSPAPRPGLTLLVDTGLADEFLPELPALRLEVDEHHRHK 306 Query: 245 --------------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM--------- 281 L A + D +LR L+ K + Sbjct: 307 DVYEHSLTVLEQAIDLEGPPGAPEDQVPGPDLVLRLASLLHDIGKPATRRFEPGGGVSFH 366 Query: 282 -------------AKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLFYLYGDKVM 325 K ++ + + + Y+ + Sbjct: 367 HHELVGARMAARRLKAMRYDKDTLKAVARLVELHLRFHGYGEGQWTDSAVRRYVTDAGPL 426 Query: 326 IAKLKIFLALHYNNLTHQDTCFILQVLSDI----------IHWKKPLFPLTGDDV-VKYG 374 + +L + + + D+ L G+++ Sbjct: 427 LPRLHRLTRSDSTTRNVRKAERLSRAYDDLERRIERLAEEEELAAIRPELNGNEIAAALA 486 Query: 375 IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 I PG +G ++ LL Sbjct: 487 IKPGPVLGEAYQFLLGVRLDEGLIGKDAAREKLLE 521 >gi|238760050|ref|ZP_04621201.1| Phosphatase [Yersinia aldovae ATCC 35236] gi|238701737|gb|EEP94303.1| Phosphatase [Yersinia aldovae ATCC 35236] Length = 412 Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 83/359 (23%), Positives = 153/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL+V + D + P++++ + K P + + + Sbjct: 2 KIYLVGGAVRDSLLNLTVTEQDWVVVGATPEQLLAQGYQQVGKDFPVFLHP-----VSHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ G++ D G DL Sbjct: 57 EYALARTERKSGSGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSADGQLFDPYHGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA ED LR+LR RF A + ++ L+ ++ L L+ Sbjct: 117 ENRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFSVAAETQSLMTTMAQSGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L+ ++P + + G +F +++ + + A + + +ID Sbjct: 174 PERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERLF------GVPAPEKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L++A + S ++R+ + C+ K L+ E + +G Sbjct: 228 TGIHTLM---------TLTIAAQLSPEVDVRFAAL----CHDLGKGLTPKEFWPHHHGHG 274 Query: 322 D------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L++ L Y++L H +L++ I W+KP Sbjct: 275 PAGVKLVQQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333 >gi|114566944|ref|YP_754098.1| polyA polymerase family protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337879|gb|ABI68727.1| polyA polymerase family protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 880 Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 82/406 (20%), Positives = 168/406 (41%), Gaps = 23/406 (5%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC- 84 ++ VGG VRD + + D+D+ + + R ++ + T ++ Sbjct: 475 GSRAYCVGGFVRDFFLRVPNFDVDLVVEGDGEELARKMAQHLGGKARIHQRFRTAALMLP 534 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVG 140 DI T R++ V + D RRDFTIN L D G +IDY G Sbjct: 535 DGTKIDIATARTEYYEFPAALPKVEKASIREDMYRRDFTINTLAIALNPDSFGDLIDYFG 594 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKGLK 198 G DL I+ + + +ED RI+R RF Y + I+ D L ++ L Sbjct: 595 GRKDLEKGLIRILYN--LSFVEDPTRIIRAIRFEQRY-KFTIEDDTLRFAKDAIERRLLG 651 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-------LSQVIE 251 LS +RI E+ LL +PL A+ + G+++ + ++ + + + Sbjct: 652 KLSYKRIIQELMLLLSEIDPLPALDRIMEIGVWEYMIPEIDLNKVSRTMIKRTPIIITWW 711 Query: 252 AEQVFEWKIDSLL-RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 E+ + I L F++L++ D++ ++ + K++ L R + Q + Sbjct: 712 EERYYGKNIKGWLVYFMLLLAGLDEELVIQIIKRYHLDNYARKAIQESRQVP--QIVEYL 769 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 E +++ D+ + + L L+ +D ++++ + ++ + G D+ Sbjct: 770 WESREILPGEMDQRLDGWSNESMVLLL--LSIKDELLWEKLVNYLDLKEQVKVEINGFDL 827 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + G+ G + I ++ +N + +E+L +++K I+ + Sbjct: 828 KEMGLKQGPEFRFIFDELYRQKLNGIIKNREEEL-QMVKKWISEGK 872 >gi|50955943|ref|YP_063231.1| poly(A) polymerase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952425|gb|AAT90126.1| tRNA nucleotidyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 478 Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 94/441 (21%), Positives = 161/441 (36%), Gaps = 61/441 (13%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 + +VGG +RD+L+ V D+D T PD ++R+ S V +YGTI + Sbjct: 31 GHELSLVGGPIRDALLGREVHDLDFTTDARPDAIVRLLSPLADAVWDIGRAYGTIGAVFG 90 Query: 86 KKYFDITTLRSDLITD-GRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLN 143 ++ ++TT RSD R V F + D LRRDFT+NAL + +++D GG+ Sbjct: 91 EEAVEVTTYRSDSYDGTTRKPDVEFGDTLEGDLLRRDFTVNALALRVPEVRLVDPSGGVE 150 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSE 203 L R + +D LR+LR RF A G +D A ++I+S+E Sbjct: 151 HLLARVLTTPSSPEVSFGDDPLRMLRAARFAAQLG-FEVDGQTQAAMAAMADRIEIVSAE 209 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD----------------QLS 247 RI E+ KLL + P I + + G+ + ++ + L+ L Sbjct: 210 RIRDELGKLLMSDRPRPGIELLVSTGLADRVLPELSALRLEVDEHHHHKDVYQHSLTVLE 269 Query: 248 QVIEAEQVFEW--KIDSLLRFIVLISWQDKKSIL------------------SMAKK--- 284 Q IE E+ + LR L+ K + +AKK Sbjct: 270 QAIEYERERHPGDAPELTLRLAALLHDIGKPATRRFEPGGAVSFHHHDVVGAKLAKKRLT 329 Query: 285 -FSLPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN 338 + + + + + +++ G + + +L + Sbjct: 330 ALRFDKATIESVSRLIELHLRFFGYTEGAWTDSAVRRYVRDAGPE--LERLHMLTRADVT 387 Query: 339 NLTHQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVK-YGIPPGKKVGNILVH 387 + + D+ L L G V+ GI PG+ VG + + Sbjct: 388 TRNRRKADRLGFAYDDLEQRIASLGEQEALDSVRPDLDGQQVMAILGIKPGRDVGQAMTY 447 Query: 388 CKQEWINSSFQLSQEDLHHLL 408 ++ +E LL Sbjct: 448 LLDLRLDQGSLGEEEATRRLL 468 >gi|227328984|ref|ZP_03833008.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 414 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 144/345 (41%), Gaps = 34/345 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+ L V + D + P+ ++ + K P + + R Sbjct: 2 KIYLVGGAVRDSLLGLPVTEKDWVVVGATPENLLTQGYQQVGKDFPVFLHP-----VSRD 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G + D LRRD TINA+ ++G +ID G DL Sbjct: 57 EYALARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA ED LR+LR RF A + ++ L+ + + L L+ Sbjct: 117 ENRLLRHVSDA---FSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAYLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L +P + + G +F ++ + + A + +ID Sbjct: 174 PERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEIDNLY------GVPAPAKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ ++MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 228 TGIHTMM---------TVAMAARLSPEIDVRFATL----CHDLGKGLTPPELWPRHHGHG 274 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + L N +D ++ D++H + L P T Sbjct: 275 PAGVKLVEALCQRLRVPN-PIRDLAKLVAEYHDLVHTVQVLQPKT 318 >gi|197120710|ref|YP_002132661.1| poly(A) polymerase [Anaeromyxobacter sp. K] gi|196170559|gb|ACG71532.1| poly(A) polymerase [Anaeromyxobacter sp. K] Length = 556 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 85/344 (24%), Positives = 120/344 (34%), Gaps = 17/344 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRL--- 110 Query: 72 PTSISYGTIKIICR-KKYFDITTLRS----------DLITDGRYAKVVFTRDWKADSLRR 120 + + R K ++ T R + D + + DS+RR Sbjct: 111 -IGRRFRLAHVYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITRDNVFGTAEEDSVRR 169 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G Sbjct: 170 DFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLG- 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I D A + L + R+ E KLL A + G I + Sbjct: 229 FTIAPDTFEAMRRTSGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPALG 288 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 A +D L+R +S L M PR R Sbjct: 289 AALETWDDGRRRAFFAHLAALDRLVRSGAEVSEAVLLGALLMHLGADAPRAGRGDAARAD 348 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + +I LALH + Sbjct: 349 EDAGAPRWDEADAFLASLVQTARLPRKVAERIRLALHAQRQLEE 392 >gi|298736336|ref|YP_003728862.1| polynucleotide adenylyltransferase PapS [Helicobacter pylori B8] gi|298355526|emb|CBI66398.1| Polynucleotide adenylyltransferase(PapS) [Helicobacter pylori B8] Length = 392 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 100/390 (25%), Positives = 159/390 (40%), Gaps = 27/390 (6%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 K + +VGG VRD LM ++ +D D+ + L + + K ++V+ T I +GTI Sbjct: 6 EKSPHELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHGTITA 65 Query: 83 ICRKKYFDITTLRSD--LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + + ++ITT R + I + ++VF+ D RRDF++NA+ +ID Sbjct: 66 LKNHQSYEITTFRIEKGHIKHRKPKELVFSTRLTDDLKRRDFSMNAIAYSPTKGLIDPFK 125 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKIL 200 G + + N+ I+ +G A R ED LRILR RF A G K I A K LK L Sbjct: 126 GRSAIENQMIECVGGARLRFFEDALRILRALRFSATLGFK-IAPSTKRAVFACKDLLKHL 184 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 S ER+ SE+NKLL KN ++EI V + ++ L + A E Sbjct: 185 SKERLQSELNKLLMGKNAYEVAKE------YQEILELVTQEKIENLGFLKNAPFNLE--- 235 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYL 319 LR + Q + P++ C+ + E+K L Sbjct: 236 ---LRLLGFFKHQKS------LENLRYPKKTCVLFSKAKECHKAFLNIHNKTELKFLLKN 286 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379 Y + L F AL + + ++ +KK L G+ + + Sbjct: 287 YDLEPFNLAL-DFYALENPKHALKIKRLLKEIFDSNEPFKKEHLALKGNALQSLDYQH-Q 344 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++G IL C I L L++ Sbjct: 345 QIGEILNACLNLVIAH---PKNNALEWLIK 371 >gi|74318068|ref|YP_315808.1| poly(A) polymerase, PcnB [Thiobacillus denitrificans ATCC 25259] gi|74057563|gb|AAZ98003.1| poly(A) polymerase, PcnB [Thiobacillus denitrificans ATCC 25259] Length = 462 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 28/256 (10%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + L + K +VGGAVRD L+ + +D D+AT P+ V R+F ++R Sbjct: 37 DDCALKVCETLAQAGFKGYLVGGAVRDLLLGGTPKDFDVATDATPEEVRRLFRRSRI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD----------------------LITDGRYAKVVF 109 + + ++C ++ ++TT R++ GR Sbjct: 94 -IGRRFQIVHVMCGRETIEVTTFRANGQKEAEDEDAHGDDAPAASRRLTDEHGRLLSDNV 152 Query: 110 TRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRIL 168 D+ RRDFTINALY D + +V DY GG+ D + R ++ IGD R ED +R+L Sbjct: 153 FGSMADDAARRDFTINALYYDPAREEVHDYFGGVGDCKKRVLRMIGDPETRYREDPVRML 212 Query: 169 RFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNG 228 R RF A + +ID + L + RI+ E KLL + + L + + Sbjct: 213 RAARFAAKL-DFHIDPETRKPVATLAPLLANIPRARIFDEALKLLLSGHALRGVHQLRAE 271 Query: 229 GIFKEIFLDVQEISLD 244 G+ + + I D Sbjct: 272 GLHHGMLPLLDTILDD 287 >gi|54298734|ref|YP_125103.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Legionella pneumophila str. Paris] gi|73619788|sp|Q5X1E5|CCA_LEGPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|53752519|emb|CAH13951.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Paris] Length = 410 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 75/410 (18%), Positives = 149/410 (36%), Gaps = 55/410 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T + Sbjct: 2 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGRDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLIT----DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + G + + D RRD TINA+ D+QG +ID G Sbjct: 57 ---EYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL + ++ + A ED +R+LR RF + + ++ L+ S+ + L Sbjct: 114 RDLEEKLLRHVSPA---FAEDPVRVLRVARFASRFHHLGFKIANETRLLMYSMVKQGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQL 246 L ER+W E K L+ KNP I+ + + + + ++ + + Sbjct: 171 HLIPERVWQEWQKSLQEKNPEQFILSLRSCDALRVVLPEINSLFGVPNPHQYHQEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------------ILSMAKKFSL 287 ++ E + L+RF L+ K S I ++ + + Sbjct: 231 HSLMALRASSELSEEPLVRFAALVHDLGKASTPIQDWPKHHGHEEEGTKLIRALCARLRI 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 P + R ++ + N + + L + ++F + ++C Sbjct: 291 PNDYRDLAVTVARAHLNIHRVCELRPNTIVKLLEQVDAFRRPQLFHKILIACQADAESCG 350 Query: 348 ILQVLSDIIHWKK---PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 V W + +T + G GK + + + + Sbjct: 351 KTVVYRQTQLWNEILSECVKVTPQTFIVQGYE-GKAIKEAMHQSRVACVE 399 >gi|171464074|ref|YP_001798187.1| poly(A) polymerase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193612|gb|ACB44573.1| poly(A) polymerase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 466 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 17/230 (7%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD + +S +D D+AT PD+V R+F K R Sbjct: 39 PHLLSKNAVKVTHTLQQAGYEAFIVGGAVRDLALGISPKDFDVATNATPDQVQRLFRKAR 98 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS-------DLITDGRYAKVVFTRDWKAD 116 + + + + +++T R+ + GR + D Sbjct: 99 L----IGRRFQIVHVTFFGKGHPEIIEVSTFRALLDNAGDHVAESGRILRDNVWGSQGED 154 Query: 117 SLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 + RRDFTINA+Y D + V+DY GG+ D++ +T++ IGD R ED +R+LR RF A Sbjct: 155 AARRDFTINAMYYDPSSETVLDYHGGMADMQKKTLRMIGDPAKRYREDPVRMLRAVRFAA 214 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 G +D+ +K K L + S R++ EI KLL + I + Sbjct: 215 KTG-FELDNATRAPIVKLGKLLSDIPSARLFDEILKLLMSGYSWRVIQGL 263 >gi|238793671|ref|ZP_04637294.1| Phosphatase [Yersinia intermedia ATCC 29909] gi|238727086|gb|EEQ18617.1| Phosphatase [Yersinia intermedia ATCC 29909] Length = 412 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 154/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL V + D + P++++ + K P + + + Sbjct: 2 KIYLVGGAVRDSLLNLPVTEQDWVVVGCTPEQLLTQGYQQVGKDFPVFLHP-----VSHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ G++ID G DL Sbjct: 57 EYALARTERKSGAGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSADGELIDPYHGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA ED LR+LR RF A + ++ L+A++ L L+ Sbjct: 117 ENRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFSIATETQSLMAAMAQSGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L+ ++P + + G +F +++ + + A + + +ID Sbjct: 174 PERVWKETEKALKTQSPQIYFQVLRDCGALVVLFPEIERLF------GVPAPEKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L++A + S +IR+ + C+ K L+ E + +G Sbjct: 228 TGIHTLM---------TLAIAAQLSPEVDIRFAAL----CHDLGKGLTPKEFWPHHHGHG 274 Query: 322 D------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L++ L Y++L H +L++ I W+KP Sbjct: 275 PAGVKLVEQLCQRLRVPNPIRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333 >gi|261822804|ref|YP_003260910.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pectobacterium wasabiae WPP163] gi|261606817|gb|ACX89303.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pectobacterium wasabiae WPP163] Length = 414 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 145/345 (42%), Gaps = 34/345 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL++L V + D + P+ ++ + K P + + Sbjct: 2 KIYLVGGAVRDSLLSLPVTEKDWVVVGATPEHLLAQGYQQVGKDFPVFLHP-----VSHD 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G + D LRRD TINA+ +QG++ID G DL Sbjct: 57 EYALARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTEQGELIDPYHGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA ED LR+LR RF A + ++ L+ + + L L+ Sbjct: 117 ENRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMVHEGELAYLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L +P + + G +F +V + + A + +ID Sbjct: 174 PERVWKETEKALSTSSPDVYFQVLRDCGALAVLFPEVDNLY------GVPAPAKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ ++MA + S ++R+ + C+ K L+ PE+ + +G Sbjct: 228 TGIHTMM---------TVAMAARLSPEIDVRFATL----CHDVGKGLTPPELWPRHHGHG 274 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + L N +D ++ D++H + L P T Sbjct: 275 PAGVKLVEALCQRLRVPN-PIRDLAKLVAEYHDLVHTVQVLQPKT 318 >gi|239906839|ref|YP_002953580.1| nucleotidyltransferase [Desulfovibrio magneticus RS-1] gi|239796705|dbj|BAH75694.1| nucleotidyltransferase [Desulfovibrio magneticus RS-1] Length = 934 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 81/417 (19%), Positives = 157/417 (37%), Gaps = 42/417 (10%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 + +VGG VRD L+ D+D+ ++ + + T + Sbjct: 485 QQTGHAVYVVGGFVRDLLLKHPNFDVDLVVEGDGVAYAAELARIYGGRYKSHPKFKTAVV 544 Query: 83 IC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD----QQGKVID 137 I + D+ T R + V K D RRDFT+NAL + G ++D Sbjct: 545 ILPDGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNALALHLSPERFGDLVD 604 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAKKG 196 + G D+++R ++ + +ED RI+R RF +G + +D L+ + Sbjct: 605 FFGAQRDIKDRVLRVLH--SLSFVEDPTRIVRAIRFSERFGFRIGGQTDRLIKNAVRHSF 662 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 LS R+ E+ + E K PL+ + M + + I + ++ + + ++E E V Sbjct: 663 FHKLSGSRVMHELRLIFEEKTPLSCLRRMQDYKLLAAIHP-LLALTPSKEAVLLEVENVI 721 Query: 257 EW------KIDS---LLRFIVLISWQDKKSILSMAKKFSLPR-----------EIRYFLI 296 W + +L F+ L + D + +A++ + + +IR Sbjct: 722 NWYRLLYIEPQPQVWMLYFLGLCTGLDPEQFAIIARRLNFSKRQAAEMVALRQQIRDTAQ 781 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 FN +++ S +L++L + L + L + + + Sbjct: 782 GIFNWEYHKGPPS-----ELYFLLEPMPLEGALYLMARNPREPLQKYVSLHLTTL----- 831 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIA 413 + +TG+D+ G+ G + +IL I+ E L L R+L Sbjct: 832 --RHKRVEVTGNDLKALGVEAGPRYADILRRVVGAAIDGLAVCRAEQLE-LARRLAK 885 >gi|313244235|emb|CBY15063.1| unnamed protein product [Oikopleura dioica] Length = 246 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 3/229 (1%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + L + + + + + I GGA RD L+ DID+ATT PD ++ + K + Sbjct: 12 LLNPALWKLKRIFDDHKKELRIAGGAPRDLLLGKIPSDIDLATTATPDEMIEMLKKEKID 71 Query: 70 VIP-TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 I I +GT+ + ++ITTLR D +TDGR+A+V FT DW+ D+ RRD TIN+++ Sbjct: 72 TINANGIKHGTVTAHIDEVNYEITTLRIDKVTDGRHAEVQFTTDWRIDANRRDLTINSMF 131 Query: 129 ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK--NIDSDG 186 G+VIDY G DL+ R I+F+G RI ED+LRILR+FRF++ +K + Sbjct: 132 LTFDGEVIDYFNGQEDLKARKIQFVGHPEERIQEDFLRILRYFRFYSRISDKEDAHCKEH 191 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 L+A + GL +S ERIWSEI K+L + ++Y G + IF Sbjct: 192 LLAIKENAAGLAGISGERIWSEIVKILNQPFDRFFVRYLYELGRVRIIF 240 >gi|71276370|ref|ZP_00652647.1| Poly(A) polymerase [Xylella fastidiosa Dixon] gi|71898647|ref|ZP_00680817.1| Poly(A) polymerase [Xylella fastidiosa Ann-1] gi|71901428|ref|ZP_00683518.1| Poly(A) polymerase [Xylella fastidiosa Ann-1] gi|170729425|ref|YP_001774858.1| polynucleotide adenyltransferase [Xylella fastidiosa M12] gi|71162832|gb|EAO12557.1| Poly(A) polymerase [Xylella fastidiosa Dixon] gi|71728799|gb|EAO30940.1| Poly(A) polymerase [Xylella fastidiosa Ann-1] gi|71731594|gb|EAO33655.1| Poly(A) polymerase [Xylella fastidiosa Ann-1] gi|167964218|gb|ACA11228.1| polynucleotide adenyltransferase [Xylella fastidiosa M12] Length = 421 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F Sbjct: 11 TISRKDIS-PNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLF 69 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ + +GR + Sbjct: 70 RSCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIED 125 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT NALY + V DYVGG D+++R ++ IGD R ED +R+LR R Sbjct: 126 DATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLA 185 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G I++ + L ++ R++ E+ KL + + + + + + G+ + Sbjct: 186 AKLG-FEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVVSFEALEDFGLIDVL 244 Query: 235 FLD 237 F + Sbjct: 245 FPE 247 >gi|293394301|ref|ZP_06638601.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582] gi|291423279|gb|EFE96508.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582] Length = 416 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 74/362 (20%), Positives = 152/362 (41%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ + V D D + P+ ++ + + + P ++ T + Sbjct: 4 KTYLVGGAVRDRLLKIPVFDHDWVVVGATPEELLALGYQQVGRDFPVFLNPNTHE----- 58 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D RRD TINA+ G+++D G+ Sbjct: 59 ---EYALARTERKSGQGYTGFVCHAAPDVTLEEDLQRRDLTINAIAQTTDGELVDPYHGV 115 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL R ++ + A ED LR+LR RF A + ++ L+ + L Sbjct: 116 DDLNARVLRHVSAA---FGEDPLRVLRVARFAARFAHLGFTIAPETAALMRQMTDSGELS 172 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L++ NP + + + +F ++ + + A + + Sbjct: 173 ALTAERVWKETEKALQSDNPQVYFQVLRDCHALQVLFPEIDALF------GVPAPEKWHP 226 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L++A + + ++R+ + C+ K L+ + + Sbjct: 227 EIDTGVHTLM---------TLAIAARLTPEIDVRFAAL----CHDLGKGLTPKQYWPHHH 273 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L Y++L H +L++ I W+K Sbjct: 274 GHGPAGVRLVEQLCQRLRVPNPIRDLSKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRK 333 Query: 361 PL 362 P Sbjct: 334 PQ 335 >gi|264679761|ref|YP_003279670.1| poly(A) polymerase [Comamonas testosteroni CNB-2] gi|262210276|gb|ACY34374.1| poly(A) polymerase [Comamonas testosteroni CNB-2] Length = 521 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 72/337 (21%), Positives = 143/337 (42%), Gaps = 45/337 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 39 PNLVDRRAIDVVQTLKRSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRA- 97 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 98 ---FIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHA 154 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFTINA+Y D + ++ +DY GG+ D + + ++ IGD Sbjct: 155 VDASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDP 214 Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A +++ ++ + L+ + R++ E+ KLL+ Sbjct: 215 ATRYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQ 274 Query: 215 AKNPLNAIVHMYNGGIFKEIFL------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 + L ++ + G+ + I+ + + Q + + +V E K + + Sbjct: 275 TGHALASVAQLKELGLSRGIYPLLDVVMERADHPFVQAALMDTDRRVAEGKPVAPSFLLA 334 Query: 269 LISWQDKKS--ILSMAKKFSLPREIRYFLISFFNCNF 303 + WQD K +AK + ++ + F+ Sbjct: 335 CVLWQDVKQGWEKRLAKSYHPFPALQESIDEVFDQRI 371 >gi|256544465|ref|ZP_05471838.1| poly A polymerase [Anaerococcus vaginalis ATCC 51170] gi|256399790|gb|EEU13394.1| poly A polymerase [Anaerococcus vaginalis ATCC 51170] Length = 226 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 132/225 (58%), Gaps = 6/225 (2%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISY 77 ++ L ++ +VGGA+RD L+ + DID+ T P+++M+IFS K+I + Sbjct: 6 LVKRLEDSGFETYLVGGALRDKLLGEKIHDIDLTTRARPEQIMKIFSD--MKLIDIGKKF 63 Query: 78 GTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQGKV 135 GTIK+I + + F+IT+ R++ D R+ K+ F+ + D RRDFTINA+ ++ GK+ Sbjct: 64 GTIKVIYKSEEFEITSFRAESFYKDKRHPDKISFSNTIEEDLKRRDFTINAMA-ERNGKI 122 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID G DL+N+ I+ +G+ + RI EDYLR LR RF + I+ + A K Sbjct: 123 IDLFDGKKDLKNKIIRAVGNPYERIEEDYLRALRAVRFATVL-DFEIEKNLKNAIKNKKN 181 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ++ +S ERI EI+K+L +KNP I + N + + IF +V++ Sbjct: 182 NIEEISKERIRDEIDKILLSKNPSRGIRLLENLDLLEYIFPEVKK 226 >gi|320160472|ref|YP_004173696.1| hypothetical protein ANT_10620 [Anaerolinea thermophila UNI-1] gi|319994325|dbj|BAJ63096.1| hypothetical protein ANT_10620 [Anaerolinea thermophila UNI-1] Length = 892 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 90/433 (20%), Positives = 160/433 (36%), Gaps = 54/433 (12%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 L++ IVGG VRD L+ D DI + R K I +GT Sbjct: 471 RRLHQA---VYIVGGFVRDLLLGRPSLDFDIVVEGDAIHLARSLEKRYGGRILPHTRFGT 527 Query: 80 IKIIC---------------------RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 K + D+ + R + V K D Sbjct: 528 AKWTISPIREKLAGMLSEKNKIDPQELPEALDLISARREFYDYPTALPTVERSSIKLDLH 587 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTIN + G + DY GGL DL + ++ + ++D R LR RF Sbjct: 588 RRDFTINTMAVRLDGHHFGDLYDYWGGLRDLEQKVVRVLH--SLSFVDDPTRQLRAVRFE 645 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 + + +I+ L + + ++ LS +R+ E+N +L+ + + + G+ I Sbjct: 646 QRF-DFHIEHRTLQLMDEGRPLIRHLSGDRLRHELNLILQEEKVFAMLARLQELGLLAAI 704 Query: 235 F----------LDVQEISLDQLSQVIE-AEQVFEWKID-SLLRFIVLISWQDKKSILSMA 282 +Q + + L + E E+V I +L + L+ + K I A Sbjct: 705 HPAFGWDEGIRPAMQHVLREPLPESWEFPEKVANLPIRLALAYLVWLLPNPEGKGI---A 761 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 ++ LP ++ N +T ++ + + + A ++L + Sbjct: 762 ERLRLPATLQEHWQDARTLLENHQTFQDFSASQVVKVLDEIALPALYAVYLLV------- 814 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 ++ + I W+ TGD + GIPPG + IL + W++ S E Sbjct: 815 ENKQLKEVLERYIYRWRFVYPQTTGDTLKAMGIPPGPEYREILWQLRAAWLDGRV-NSVE 873 Query: 403 DLHHLLRKLIASS 415 + LL+ L++S+ Sbjct: 874 EEQALLQCLLSSA 886 >gi|238018594|ref|ZP_04599020.1| hypothetical protein VEIDISOL_00424 [Veillonella dispar ATCC 17748] gi|237865065|gb|EEP66355.1| hypothetical protein VEIDISOL_00424 [Veillonella dispar ATCC 17748] Length = 472 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 95/462 (20%), Positives = 168/462 (36%), Gaps = 66/462 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + Sbjct: 3 EQANRILTVLEEAGYEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRGQDIQTTD 62 Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 S+G + K ++I T R++ R ++ + + D LRRDFT+N + Sbjct: 63 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEIAYADTLEEDVLRRDFTVNGMAM 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ G+VID VGG D++++T++ IG+A R ED LR+ R RF A + D L A Sbjct: 123 NRFGEVIDLVGGRRDIKHKTLRTIGNAQQRFEEDALRLFRACRFVAKLDFLPTE-DLLEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIF 235 KA + LS ER+ SE+++L+ + + + + I Sbjct: 182 MPKAFYRVPGLSLERVRSELDRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAREVPIL 241 Query: 236 LDV-------QEISLDQLSQVIEAEQVF-EWKIDSLLRFIVLISW--------------- 272 ++ QE + V + D LR+ L+ Sbjct: 242 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLTLRWGALLHDVAKGMPTVRAVVNGR 301 Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNF-----------NQKTLSIPEI 313 + ++ + P+ + + N+K E Sbjct: 302 LTDRGHDTLGAEMTETLLTRLGYPKSFVRRVAWIVKNHMRFHYFVQNGEANEKKWIRKEA 361 Query: 314 KKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + + IA K+ A + + + P+ D+ Sbjct: 362 RSGEFRDSQIMRIAWEQLSKVCAADVLGCGKPYASTDGTLAFGECMADLSLEMPIHTKDL 421 Query: 371 --VKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + I GKKVG L + + N + L+ L Sbjct: 422 NYDERVIKLAGKKVGEGLQYLLGQVQNGVIPNEPDALYDALD 463 >gi|300703163|ref|YP_003744765.1| poly(a) polymerase i [Ralstonia solanacearum CFBP2957] gi|299070826|emb|CBJ42123.1| poly(A) polymerase I [Ralstonia solanacearum CFBP2957] Length = 519 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQVLFRRSR 122 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDP 238 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 H R ED +R+LR RF A G I+ + + + + R++ E+ KLL + Sbjct: 239 HTRYREDPVRMLRAVRFAAKTG-FGIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + + +++L+Q Sbjct: 298 HAWASLQELRKAGLHRGLLP-LLDVALEQ 325 >gi|292486910|ref|YP_003529780.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora CFBP1430] gi|292900695|ref|YP_003540064.1| multifunctional CCA-adding tRNA nucleotidyltransferase/2'-nucleotidase/2',3'-cyclic phosphodiesterase/phosphatase [Erwinia amylovora ATCC 49946] gi|291200543|emb|CBJ47672.1| multifunctional Cca protein [includes: CCA-adding enzyme (tRNA nucleotidyltransferase); 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; phosphatase] [Erwinia amylovora ATCC 49946] gi|291552327|emb|CBA19372.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora CFBP1430] Length = 408 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 149/347 (42%), Gaps = 40/347 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L++L ++D D + P +++++ + + P + Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPRQMLQLGYQQIGRDFPVFLHP--------D 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y V + D RRD TINA+ D G D GG Sbjct: 54 SHEEYALARTERKSGQGYTGFVCYSAPDVTLEQDLARRDLTINAIARDTDGNYYDPYGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL+ R ++ + A ED LR+LR RF A + + N ++ L+ ++ L+ Sbjct: 114 SDLQQRLLRHVSAA---FNEDPLRVLRVARFAARFADLNFRIADETLALMQTMTDSGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E L+ NP + + G +F + LD+L V A + Sbjct: 171 HLTAERVWKETESALQTPNPQVFFQVLRDCGALAVLFPE-----LDKLYGVP-APAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA + S EIR+ + + K L+ PE + Sbjct: 225 EIDTGVHTLM---------TLAMAARLSPEIEIRFAALF----HDVGKALTPPEKWPSHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 +G + + L N +D ++ D++H + P+ Sbjct: 272 GHGPAGVPLVAALCERLRVPNAL-RDLALLVTEFHDLVHTIQHQPPV 317 >gi|269467943|gb|EEZ79678.1| tRNA nucleotidyltransferase/poly(A) polymerase [uncultured SUP05 cluster bacterium] Length = 379 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 79/372 (21%), Positives = 155/372 (41%), Gaps = 22/372 (5%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K D + + ++ ++K + +VGG VRD L+ L +D D+AT P++V ++F ++R Sbjct: 12 KKLLDKNAVKVIDTIHKAGFEVYLVGGCVRDLLLGLRPKDFDVATNAKPEQVHKLFKRSR 71 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLIT---DGRYAKVVFTRDWKADSLRRDFT 123 + + ++ + + ++ T RS + G + + + D +RRDF Sbjct: 72 L----IGRRFRLVHVMFSARNFIEVATFRSGKVQTAKSGVIVRDNCYGNIEDDVIRRDFN 127 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INALY D + +VIDYVGGL D+ N+ I IG+ R +D +R++R RF + K + Sbjct: 128 INALYYDIKKHQVIDYVGGLIDISNKEIHMIGEPTLRFEQDPVRMIRAVRFQSKLSAK-L 186 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + + + L +S R++ E KL + + G+ + +F + S Sbjct: 187 SPEIHASILNQAHLLSHVSPARLYEECIKLFHNEYAFEVFESLEKYGLLQCLFKQTHKNS 246 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK------FSLPREIRYFLI 296 + + + + ++ + K + + WQ + + KK ++ + +I Sbjct: 247 FIKKALLNTSARIKQNKPVTPAFLFAVFLWQAQNERFIVIKKKQKSFYLAMAKASEEVII 306 Query: 297 ------SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350 S + KL ++ KV + Y+ L + + Sbjct: 307 TQIQQVSLPKWLTARIKDIWMMQSKLEKMHPKKVQELLDNPRFRMAYDFLLLRSKSINPE 366 Query: 351 VLSDIIHWKKPL 362 +L W K Sbjct: 367 LLETAKFWTKVQ 378 >gi|319410202|emb|CBY90540.1| K00970 poly(A) polymerase [Neisseria meningitidis WUE 2594] Length = 478 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGA+RD L+ + +D D+AT +P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----VG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|241758902|ref|ZP_04757015.1| multifunctional CCA protein [Neisseria flavescens SK114] gi|241321110|gb|EER57323.1| multifunctional CCA protein [Neisseria flavescens SK114] Length = 420 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 137/341 (40%), Gaps = 39/341 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D + ++ + K P + Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVVVGADAQNMLAQGYQPVGKDFPVFLHP--------D 58 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 59 SHEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGTIIDPFGGQ 118 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + D + L+ + L Sbjct: 119 QDLAAGILRHVSPA---FAEDPVRILRIARFAARYGFQIADETMSLMRQMVENGEADALV 175 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + + LD L V + + +ID Sbjct: 176 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPE-----LDALFGVPQRAD-YHPEID 229 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY- 320 S + ++ ++ A + +L RY + + K + +I Y + Sbjct: 230 SGIHTLM---------VVQRAAEMNLSLAERYAAL----LHDLGKAKTPADILPKHYGHD 276 Query: 321 --GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 G + + + A + + C +L + +K Sbjct: 277 VNGVEPVREVNQRLRAPKHCAELAELVCRWHIMLHQVGQFK 317 >gi|269798577|ref|YP_003312477.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Veillonella parvula DSM 2008] gi|269095206|gb|ACZ25197.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Veillonella parvula DSM 2008] Length = 472 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 94/462 (20%), Positives = 168/462 (36%), Gaps = 66/462 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + Sbjct: 3 EQANRILTILEEAGHEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRSHDIQTTD 62 Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 S+G + K ++I T R++ R ++ + + D LRRDFT+N + Sbjct: 63 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAM 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ G+VID VGG D++++T++ IG+A R ED LR+ R RF A + + L A Sbjct: 123 NRYGEVIDLVGGRRDIKHKTLRTIGNAQERFEEDALRLFRACRFVAKL-DFLPSKELLEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIF 235 KA + LS ER+ SEIN+L+ + + + + I Sbjct: 182 MPKAFHRVPGLSLERVRSEINRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAREVPIL 241 Query: 236 LDV-------QEISLDQLSQVIEAEQVF-EWKIDSLLRFIVLISW--------------- 272 ++ QE + V + D +LR+ L+ Sbjct: 242 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLVLRWGALLHDVAKGMPAVRAVINGR 301 Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNF-----------NQKTLSIPEI 313 + ++ + P+ + + N+K E Sbjct: 302 LTDRGHDTLGAEMTETLLTRLGYPKAFVQRVAWIVKNHMRFHYFVQNGDANEKKWLRKEA 361 Query: 314 KKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + + A K+ A + + + P+ D+ Sbjct: 362 RSGEFRDSQIMRTAWEQLAKVCAADVLGCGKPYSSTDGTLAFGECMADLSLEMPVHTKDL 421 Query: 371 --VKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + I GK+VG L + + N + L+ L Sbjct: 422 NYDERVIKLAGKQVGEGLQYLLGQVQNGVVPNEPDALYDALD 463 >gi|318604181|emb|CBY25679.1| tRNA nucleotidyltransferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 412 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 80/362 (22%), Positives = 153/362 (42%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL + + D + P++++ + K P + T + Sbjct: 2 KIYLVGGAVRDSLLNLPITEQDWVVVGATPEQLLAQGYQQVGKDFPVFLHPVTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ +G++ D G Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSSEGELFDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + DA ED LR+LR RF A + ++ L+A++ L Sbjct: 114 QDIEKRVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTVASETQSLMAAMAKSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L+ ++P + + G +F +++ + + A + + Sbjct: 171 ALTLERVWKETEKALKTQSPQIYFQVLRDCGALAVLFPEIERLF------GVPAPEKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA + S ++R+ + C+ K L+ E + Sbjct: 225 EIDTGIHTLM---------TLAMAAQLSPEVDVRFAAL----CHDLGKGLTPKEFWPHHH 271 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L Y++L H +L++ I W+K Sbjct: 272 GHGPAGVKLVEQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRK 331 Query: 361 PL 362 P Sbjct: 332 PE 333 >gi|304406910|ref|ZP_07388564.1| Polynucleotide adenylyltransferase region [Paenibacillus curdlanolyticus YK9] gi|304343897|gb|EFM09737.1| Polynucleotide adenylyltransferase region [Paenibacillus curdlanolyticus YK9] Length = 451 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 100/433 (23%), Positives = 174/433 (40%), Gaps = 52/433 (12%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + +L L ++ VGG VRD + S+ DIDIAT LPD VM +F +T +P Sbjct: 13 EAALPVLHTLEHAGYEAVFVGGCVRDVIAGRSITDIDIATAALPDVVMSLFERT----VP 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ +I ++ +++TT RS+ D R V F + + D LRRDFTINA+ Sbjct: 69 TGLQHGTVTVIVDERTYEVTTYRSEADYEDYRRPTDVAFIAELEGDLLRRDFTINAMALR 128 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G ++D GGL DLR I+ +G A R ED LR++R RF + +G I A Sbjct: 129 SNGTLVDPYGGLTDLRRGRIRCVGQAEERFREDALRMVRAVRFASTFG-YAIAPSAWRAL 187 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY-------------------NGGIF 231 ++ ++ L+ ++ ERI +E++K++ P A + + G Sbjct: 188 LRNRELLRYVAMERIGAELDKMIGGAGPHRAAALLAASGLLARAKEPLPAGFAKPDCGYR 247 Query: 232 KE--IFLDVQEISLDQLSQVIEAEQVFEWKIDSL--LRFIVLISWQDKKSILSMAKKFSL 287 + + D + + A + K D + + +S +D + L ++ Sbjct: 248 QRPALRSGRGAGGADGVPPLTAALARLQSKDDRWAGVFLALRLSPEDAEETL---QRLRF 304 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYL-----------YGDKVMIAKLKIFLALH 336 P S + L+ L G + A L+I A Sbjct: 305 PGRRIASARSVVMLHAAAAPLAAASGAAAVPLAAAAWVDAVLAAGVETASAWLRITRAFA 364 Query: 337 YNN-------LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHC 388 ++ L+ + L+ + + G + G+ PG + G++L Sbjct: 365 ASDGQIGGLTLSSGALEQLAAQLAQMPCTAVRELAVNGSLLCAHLGMKPGPRTGSLLQQL 424 Query: 389 KQEWINSSFQLSQ 401 + + Sbjct: 425 LRSVALGETPNGR 437 >gi|238782843|ref|ZP_04626872.1| Phosphatase [Yersinia bercovieri ATCC 43970] gi|238716266|gb|EEQ08249.1| Phosphatase [Yersinia bercovieri ATCC 43970] Length = 412 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 154/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+ L V + D + P++++ + K P + + + Sbjct: 2 EIYLVGGAVRDNLLGLPVTERDWVVVGAAPEQLLAQGYQQVGKDFPVFLHP-----VSHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ G++ID G DL Sbjct: 57 EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARRDNGELIDPYHGRQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + +A ED LR+LR RF A + ++ L+A++ L L+ Sbjct: 117 ENRLLRHVSEA---FGEDPLRVLRVARFAARFAHLGFTVAPETQSLMAAMAQSGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L+ +NP + + G +F ++ D+L V E+ + +ID Sbjct: 174 PERVWKETEKALKTQNPQIYFQVLRDCGALAVLFPEI-----DRLFGVPAPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L++A + + +IR+ + C+ K L+ E + +G Sbjct: 228 TGIHTLM---------TLAIAAQLTPEVDIRFAAL----CHDLGKGLTPKEFWPHHHGHG 274 Query: 322 D------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L++ L Y++L H +L++ I W+KP Sbjct: 275 PAGVKLVEQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333 >gi|313668687|ref|YP_004048971.1| poly(A) polymerase [Neisseria lactamica ST-640] gi|313006149|emb|CBN87610.1| putative poly(A) polymerase [Neisseria lactamica 020-06] Length = 453 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|161723240|ref|YP_096745.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|73619789|sp|Q5ZRX9|CCA_LEGPH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase Length = 410 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 78/410 (19%), Positives = 150/410 (36%), Gaps = 55/410 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T + Sbjct: 2 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGRDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLIT----DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + G + + D RRD TINA+ D+QG +ID G Sbjct: 57 ---EYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL + ++ + A +ED +R+LR RF + + ++ L+ S+ + L Sbjct: 114 RDLEEKLLRHVSSA---FVEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQL 246 L ER+W E K LE KNP I+ + + + I ++ + + Sbjct: 171 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSLFGVPNPHQYHQEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------------ILSMAKKFSL 287 ++ E + L+RF L+ K S I ++ + + Sbjct: 231 HSLMTLRASSELSEEPLVRFAALVHDLGKASTPIQAWPKHHGHEEEGTKLIRALCARLRI 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 P + R ++ + N L + L + ++F + ++C Sbjct: 291 PNDYRDLAVTVARAHLNIHRLCELRPNTIVKLLEQVDAFRRPQLFHKILIACQADAESCG 350 Query: 348 ILQVLSDIIHWKK---PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 V W + +T + G GK + + + + Sbjct: 351 KTVVYRQTQLWNEILSECVKVTPQTFIVQGYE-GKAIKEAMHQSRVACVE 399 >gi|52630057|gb|AAU28798.1| tRNA nucleotidyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 424 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 78/410 (19%), Positives = 150/410 (36%), Gaps = 55/410 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T + Sbjct: 16 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGRDFPVFLHPETKE----- 70 Query: 87 KYFDITTLRSDLIT----DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + G + + D RRD TINA+ D+QG +ID G Sbjct: 71 ---EYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 127 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL + ++ + A +ED +R+LR RF + + ++ L+ S+ + L Sbjct: 128 RDLEEKLLRHVSSA---FVEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELA 184 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQL 246 L ER+W E K LE KNP I+ + + + I ++ + + Sbjct: 185 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSLFGVPNPHQYHQEIDTGI 244 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------------ILSMAKKFSL 287 ++ E + L+RF L+ K S I ++ + + Sbjct: 245 HSLMTLRASSELSEEPLVRFAALVHDLGKASTPIQAWPKHHGHEEEGTKLIRALCARLRI 304 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 P + R ++ + N L + L + ++F + ++C Sbjct: 305 PNDYRDLAVTVARAHLNIHRLCELRPNTIVKLLEQVDAFRRPQLFHKILIACQADAESCG 364 Query: 348 ILQVLSDIIHWKK---PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 V W + +T + G GK + + + + Sbjct: 365 KTVVYRQTQLWNEILSECVKVTPQTFIVQGYE-GKAIKEAMHQSRVACVE 413 >gi|284993422|ref|YP_003411977.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geodermatophilus obscurus DSM 43160] gi|284066668|gb|ADB77606.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Geodermatophilus obscurus DSM 43160] Length = 487 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 87/471 (18%), Positives = 170/471 (36%), Gaps = 75/471 (15%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLM----------NLSVQDIDIATTILPDRVMRIFS 64 L + + +VGG+VRD+L+ ++ D+D+ T P++V+ + Sbjct: 19 LTRLGERFTAAGFEVHLVGGSVRDALLSAGSAGGRGTGMAPGDLDVTTDARPEQVLDLLR 78 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFT 123 + I++GT+ +ITT R+D + R +V + D RRDFT Sbjct: 79 GFASSTWNSGIAFGTVGAEVDGVRLEITTFRADRYDRESRNPEVAWGDSLVDDLARRDFT 138 Query: 124 INALYAD--QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 +NA+ V D GGL DL ++ G A +D LR+LR RF A G Sbjct: 139 VNAMAVSLGPDRTVTDPYGGLGDLLAGRLRTPGAAEDSFADDPLRMLRAVRFVAQLGLTP 198 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 +D + + A L ++ ER+ E++K L +P A+ G+ + ++ + Sbjct: 199 VD-EVVAAMTSLAPELGRITPERVQVELSKTLLQHSPRAALELFVATGLADVVLPELSAL 257 Query: 242 SLDQLSQVIEAEQVFEWK-------------------IDSLLRFIVLISWQDKKS----- 277 + ++ + + + V+ D +LR L+ K + Sbjct: 258 RM-EIDEHHQHKDVYTHSLTVLDRAIALEEADPDAESPDLVLRLAALLHDIGKPATRRHE 316 Query: 278 -----------------ILSMAKKFSLPREI-----RYFLISFFNCNFNQKTLSIPEIKK 315 + + +E+ R + + + + +++ Sbjct: 317 PRGRVSFHHHEVVGAKLVRKRLQALRYSKEVVESVARLTFLHLRFHGYGRGEWTDSAVRR 376 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW----------KKPLFPL 365 GD ++ +L + + + + + L Sbjct: 377 YVTDAGD--LLPRLHKLVRSDCTTRNKRRAAALSATYDALERRIAELSAAEDLARVRPDL 434 Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 G+ +++ GIPPG++VG H K + L+ E+ LR A+ Sbjct: 435 DGNAIMEILGIPPGREVGEAWKHLKDLRLERG-PLAPEEAEAELRSWWAAR 484 >gi|299533945|ref|ZP_07047306.1| poly(A) polymerase [Comamonas testosteroni S44] gi|298718072|gb|EFI59068.1| poly(A) polymerase [Comamonas testosteroni S44] Length = 521 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 72/337 (21%), Positives = 143/337 (42%), Gaps = 45/337 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 39 PNLVDRRAIDVVQTLKRSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRA- 97 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 98 ---FIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHA 154 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFTINA+Y D + ++ +DY GG+ D + + ++ IGD Sbjct: 155 VDASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDP 214 Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A +++ ++ + L+ + R++ E+ KLL+ Sbjct: 215 ATRYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQ 274 Query: 215 AKNPLNAIVHMYNGGIFKEIFL------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 + L ++ + G+ + I+ + + Q + + +V E K + + Sbjct: 275 TGHALASVAQLKELGLSRGIYPLLDVVMERADHPFVQAALMDTDRRVAEGKPVAPSFLLA 334 Query: 269 LISWQDKKS--ILSMAKKFSLPREIRYFLISFFNCNF 303 + WQD K +AK + ++ + F+ Sbjct: 335 CVLWQDVKQGWEKRLAKSYHPFPALQESIDEVFDQRI 371 >gi|288556123|ref|YP_003428058.1| tRNA CCA-pyrophosphorylase [Bacillus pseudofirmus OF4] gi|288547283|gb|ADC51166.1| tRNA CCA-pyrophosphorylase [Bacillus pseudofirmus OF4] Length = 389 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 175/396 (44%), Gaps = 33/396 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +LS L++ + IVGGAVRD L + DIDI T P+ + +FSKT + Sbjct: 17 AEPVLSQLHERGFLAYIVGGAVRDLLCKRPITDIDIVTEATPEEISTVFSKT----FSMN 72 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 + T+ + F++TT R + + D L RDFTIN++ D++G+ Sbjct: 73 NQHQTVIVRHSGCLFEVTTQR--------------GKSIEEDLLMRDFTINSIALDKKGQ 118 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAK 194 + D + G +D++N+ I+ + R+ ED LR+LR +RF + G K ++ G + Sbjct: 119 LFDPLDGQSDIKNQVIRS-HNPAARMSEDPLRMLRAYRFSSDLGFKVAENLGEI-IRYQA 176 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI-FLDVQEISLDQLSQVIEAE 253 + L ++ ERI E KL+ A+ + + G++K + + ++D L ++ + Sbjct: 177 ETLSRVAMERISKEFYKLVSGPFKHTALKELASSGLYKHCGLPQLDKKAIDFLRELPVLK 236 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 E I + + + ++ + + + + +++R L +F + Sbjct: 237 NEKEEVIWTFICLSMNLTSESHLKGFLFSNQLT--KDVRNRLAAF--------SYRNNHS 286 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 ++ LY + +A L + N ++ IL + + K +TG D++++ Sbjct: 287 WEVLSLYRASIEVA-LDVERVRELTNESYIAKEKILTIWEQLPIQTKNDLAVTGTDLLRH 345 Query: 374 GI-PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 G +G L+ +++ + ++ L + Sbjct: 346 FKREAGPWLGEALLWVEEQVVTGYLPNEKDTLLQAI 381 >gi|254468684|ref|ZP_05082090.1| poly(A) polymerase [beta proteobacterium KB13] gi|207087494|gb|EDZ64777.1| poly(A) polymerase [beta proteobacterium KB13] Length = 397 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 82/379 (21%), Positives = 145/379 (38%), Gaps = 31/379 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 S ++ ++ L + + ++ +VGG +RD L+N+ +D DIAT PD+V IF +R Sbjct: 23 SYVLEVIRKLQQYDFQAYMVGGCIRDLLLNIQPKDFDIATNAHPDQVTAIFKNSRI---- 78 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALY 128 + + + ++ +++T R + V + D+ RRDFT+NA++ Sbjct: 79 IGRRFKIVHVRIDRQIIEVSTFRKKPSEVNKLRNGVVQDNAFGTIEEDAQRRDFTMNAIF 138 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D + D G D+ NR I FIG+ RI ED +R+LR RF A L Sbjct: 139 YDPLNNHLFDPFNGKKDIENRNINFIGNPEQRINEDPVRLLRAIRFHAKLEFNQG--LTL 196 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 K L + RI+ E+ K + +I + + F + SLD+ S Sbjct: 197 GNIKKFIPLLDNIPYSRIFDEMMKFFLTGHAKKSIFVLKKYQLLDLFFPFLSNHSLDKNS 256 Query: 248 QVIEAEQ------VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS---- 297 +I + ++ V++ SI + K +L +I+ F Sbjct: 257 LLIHGMNNTDSRVKADKTVNPGFLMAVILWDAFNYSIKNNDSKLTLDTQIKDFFNKTDPN 316 Query: 298 -FFNCNFNQKTLSIPEIKKLF--------YLYGDKVMIAKLKIFLALHYNNLTHQDTC-F 347 F + F + I ++ F Y + FL L ++ + Sbjct: 317 IFIHNRFIKYISEIWRLQPRFTKLKTRSVYRLSNHPRFRAAYDFLLLRCSSDQEEKRYGE 376 Query: 348 ILQVLSDIIHWKKPLFPLT 366 + + LT Sbjct: 377 WWTKWQEASEASRKKLLLT 395 >gi|209520582|ref|ZP_03269337.1| poly(A) polymerase [Burkholderia sp. H160] gi|209498975|gb|EDZ99075.1| poly(A) polymerase [Burkholderia sp. H160] Length = 547 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 31/246 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 95 PTLISRNAIRVTEGLQQAGYRAFIVGGAVRDLLLGVKPKDFDVATDATPEQVQKLFRRAR 154 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ + +T R+ D T G Sbjct: 155 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPKRLKRDELDRRTHAVDASG 210 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 211 RVLRDNVWGEQHEDATRRDFTINAMYYDPATETVLDYHNGMADMRARLLRMIGDPATRYR 270 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A + +ID K + + + R++ E+ KL+ + + L Sbjct: 271 EDPVRMLRVVRFAAKL-DFDIDDATRAPIEKMADLINNVPAARLFDEMLKLMLSGHALAC 329 Query: 222 IVHMYN 227 + + Sbjct: 330 LKRLRQ 335 >gi|260222990|emb|CBA33107.1| hypothetical protein Csp_B17390 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 531 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 82/333 (24%), Positives = 152/333 (45%), Gaps = 39/333 (11%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--- 66 D IN++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F + Sbjct: 40 LVDERAINVVRTLKQAGFEAYVVGGAVRDLLVGLRPKDFDVATNATPEQVKGLFRRAFII 99 Query: 67 --RYKVIPT----SISYGTIKIICRKKYFDIT----------TLRSD-------LITDGR 103 R++++ + I++ + Y D T +S+ + + GR Sbjct: 100 GRRFRIVHVVYGRGREHEVIEVSTFRAYLDNAAAEQVAGNERTSKSELAGMKHAVDSTGR 159 Query: 104 YAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILE 162 + + D++RRDFTINA+Y D + ++ +DY GL D ++RT++ IGDA R E Sbjct: 160 VLRDNVWGPQEEDAVRRDFTINAMYYDPETQIVVDYHNGLKDSKSRTLRMIGDAATRYRE 219 Query: 163 DYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 D +RI+R RF A ++ +K++K L + R++ E+ KLL+ + L Sbjct: 220 DPVRIIRAVRFAAKLSPLGFKLEPKTAGPLVKSQKLLNDVPQSRLFDEMLKLLQTGHALA 279 Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-------EQVFEWKIDSLLRFIVLISWQ 273 +I + G+ I+ + ++ +++ Q A +V E K + + + W Sbjct: 280 SIEQLKVLGLATGIYP-LLDVVVERGEQPFVAAALKDTDRRVGEGKPVAPSFLLACVLWA 338 Query: 274 DKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 D + A++ + L FN + Sbjct: 339 DVRD--GWAQRLKSGQHSHPALQDAIEDVFNAR 369 >gi|120610653|ref|YP_970331.1| poly(A) polymerase [Acidovorax citrulli AAC00-1] gi|120589117|gb|ABM32557.1| poly(A) polymerase [Acidovorax citrulli AAC00-1] Length = 531 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 77/333 (23%), Positives = 138/333 (41%), Gaps = 37/333 (11%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT- 66 D ++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 39 PELVDRRATEVVRTLQQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAF 98 Query: 67 ----RYKVIPT----SISYGTIKIICRKKYFDIT----------TLRS-------DLITD 101 R++++ + I++ + Y D T R+ + Sbjct: 99 IIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAEQVSGNEKTSRAALAGMQHAVDAS 158 Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRI 160 GR + D+ RRDFTINA+Y D + V+DY G+ D R + I+ IGD R Sbjct: 159 GRVLRDNVWGPQDEDATRRDFTINAMYYDPATQVVVDYHKGIQDARKKVIRMIGDPATRY 218 Query: 161 LEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 ED +RI+R RF A I+ ++++ L + R++ E+ KLL+ + Sbjct: 219 REDPVRIIRAVRFAAKLAGVGFTIEPKTAAPLVESQALLADVPQSRMFDEMLKLLQTGHA 278 Query: 219 LNAIVHMYNGGIFKEIFL------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272 + I + G+ I+ + S + +V E K + + + W Sbjct: 279 IATIEQLRKLGLATGIYPLLDVVVERAGTSFVSAALADTDRRVGEGKPVAPSFLLACVLW 338 Query: 273 QDKKSI--LSMAKKFSLPREIRYFLISFFNCNF 303 QD K+ +A++ ++ + F+ Sbjct: 339 QDVKTQWDRRLAQREHPFPALQGAIDDVFDQRI 371 >gi|238796953|ref|ZP_04640457.1| Phosphatase [Yersinia mollaretii ATCC 43969] gi|238719213|gb|EEQ11025.1| Phosphatase [Yersinia mollaretii ATCC 43969] Length = 412 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 84/359 (23%), Positives = 155/359 (43%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+NL V + D + P++++ + K P + + + Sbjct: 2 KVYLVGGAVRDNLLNLPVTEQDWVVVGATPEQLLAQGYQQVGKDFPVFLHP-----VSHE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R S G + D LRRD TINA+ G++ID G DL Sbjct: 57 EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIARSDDGELIDPYHGRQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +N+ ++ + +A ED LR+LR RF A + ++ L+A++ L L+ Sbjct: 117 KNKVLRHVSEA---FGEDPLRVLRVARFAARFAHLGFSVAPETQSLMAAMARSGELSALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L+ ++P + + +F ++ D+L V E+ + +ID Sbjct: 174 PERVWKETEKALKTQSPQVYFQVLRDCDALAVLFPEI-----DRLFGVPAPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L++A + S +IR+ + C+ K L+ + + +G Sbjct: 228 TGIHTLM---------TLTIAARLSPEVDIRFAAL----CHDLGKGLTPKQFWPHHHGHG 274 Query: 322 D------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L++ L Y++L H +L++ I W+KP Sbjct: 275 PAGVKLVEQLCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRKPE 333 >gi|312170980|emb|CBX79239.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia amylovora ATCC BAA-2158] Length = 408 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 40/347 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L++L ++D D + P +++++ + + P + Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPRQMLQLGYQQIGRDFPVFLHP--------D 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y V + D RRD TINA+ D G D GG Sbjct: 54 SHEEYALARTERKSGQGYTGFVCYSAPDVTLEQDLARRDLTINAIARDTDGNYYDPYGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL+ R ++ + A ED LR+LR RF A + + N ++ L+ ++ L+ Sbjct: 114 SDLQQRLLRHVSAA---FNEDPLRVLRVARFAARFADLNFRIADETLALMQTMTDSGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E L+ NP + + G +F + LD+L V A + Sbjct: 171 HLTAERVWKETESALQTPNPQVFFQVLRDCGALAVLFPE-----LDKLYGVP-APAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+M+ + S EIR+ + + K L+ PE + Sbjct: 225 EIDTGVHTLM---------TLAMSARLSPEIEIRFAALF----HDVGKALTPPEKWPSHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 +G + + L N +D ++ D++H + P+ Sbjct: 272 GHGPAGVPLVAALCERLRVPNAL-RDLALLVTEFHDLVHTIQHQPPV 317 >gi|260440917|ref|ZP_05794733.1| PcnB [Neisseria gonorrhoeae DGI2] gi|291044239|ref|ZP_06569948.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae DGI2] gi|291011133|gb|EFE03129.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae DGI2] Length = 477 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IG+A R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDI-PDIHPLLNALRV 268 >gi|220915422|ref|YP_002490726.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953276|gb|ACL63660.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1] Length = 556 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 85/344 (24%), Positives = 120/344 (34%), Gaps = 17/344 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRL--- 110 Query: 72 PTSISYGTIKIICR-KKYFDITTLRS----------DLITDGRYAKVVFTRDWKADSLRR 120 + + R K ++ T R + D + + DS+RR Sbjct: 111 -IGRRFRLAHVYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITRDNVFGTAEEDSVRR 169 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G Sbjct: 170 DFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLG- 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I D A + L + R+ E KLL A + G I + Sbjct: 229 FTIAPDTFEAMRRTSGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPALG 288 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 A +D L+R +S L M PR R Sbjct: 289 AALETWDDGRRRAFFAHLAALDRLVRSGAEVSEAVLLGALLMHLGADAPRAGRADAARGD 348 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 + +I LALH + Sbjct: 349 EDAGAPRWDEADAFLASLVQTARLPRKVAERIRLALHAQRQLEE 392 >gi|54295580|ref|YP_127995.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Legionella pneumophila str. Lens] gi|73619790|sp|Q5WT58|CCA_LEGPL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|53755412|emb|CAH16908.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Lens] gi|307611620|emb|CBX01304.1| transfer RNA nucleotidyltransferase [Legionella pneumophila 130b] Length = 410 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 77/410 (18%), Positives = 149/410 (36%), Gaps = 55/410 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T + Sbjct: 2 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGRDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLIT----DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + G + + D RRD TINA+ D+QG +ID G Sbjct: 57 ---EYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL + ++ + A ED +R+LR RF + + ++ L+ S+ + L Sbjct: 114 RDLEEKLLRHVSSA---FAEDPVRVLRVARFASRFHHLGFRIANETRLLMYSMVKQGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQL 246 L ER+W E K LE KNP I+ + + + I ++ + + Sbjct: 171 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSLFGVPNPHQYHQEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------------ILSMAKKFSL 287 ++ E + L+RF L+ K S I ++ + + Sbjct: 231 HSLMTLRASSELSEEPLVRFAALVHDLGKASTPIQAWPKHHGHEEEGTKLIRALCARLRI 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 P + R ++ + N + + L + ++F + ++C Sbjct: 291 PNDYRDLAVTVARAHLNIHRVCELRPNTIVKLLEQVDAFRRPQLFHKILIACQADAESCG 350 Query: 348 ILQVLSDIIHWKK---PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 V W + +T + G GK + + + + Sbjct: 351 KTVVYRQTQLWNEILSECVKVTPQTFIVQGYE-GKAIKEAMHQSRVACVE 399 >gi|59800858|ref|YP_207570.1| hypothetical protein NGO0415 [Neisseria gonorrhoeae FA 1090] gi|194098159|ref|YP_002001207.1| PcnB [Neisseria gonorrhoeae NCCP11945] gi|240016171|ref|ZP_04722711.1| PcnB [Neisseria gonorrhoeae FA6140] gi|59717753|gb|AAW89158.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Neisseria gonorrhoeae FA 1090] gi|193933449|gb|ACF29273.1| PcnB [Neisseria gonorrhoeae NCCP11945] Length = 452 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IG+A R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDI-PDIHPLLNALRV 268 >gi|240013733|ref|ZP_04720646.1| PcnB [Neisseria gonorrhoeae DGI18] gi|240115266|ref|ZP_04729328.1| PcnB [Neisseria gonorrhoeae PID18] gi|240120803|ref|ZP_04733765.1| PcnB [Neisseria gonorrhoeae PID24-1] gi|268600948|ref|ZP_06135115.1| poly(A) polymerase [Neisseria gonorrhoeae PID18] gi|268585079|gb|EEZ49755.1| poly(A) polymerase [Neisseria gonorrhoeae PID18] Length = 452 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IG+A R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDI-PDIHPLLNALRV 268 >gi|297616726|ref|YP_003701885.1| hypothetical protein Slip_0536 [Syntrophothermus lipocalidus DSM 12680] gi|297144563|gb|ADI01320.1| CBS domain containing protein [Syntrophothermus lipocalidus DSM 12680] Length = 879 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 80/406 (19%), Positives = 154/406 (37%), Gaps = 23/406 (5%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC- 84 +VGG VRD L+ + DID+ R ++ + T ++ Sbjct: 477 GFMVYMVGGIVRDLLLGVPNYDIDLVVEGEGLVFARALAQRLGGRARVHERFQTAVVVLP 536 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVG 140 D+ T R++ VV + D RRDFTIN + + G++IDY G Sbjct: 537 DGFKIDVATARTEYYEFPAALPVVHRSSIREDLYRRDFTINTMAICLNPGRFGELIDYFG 596 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAKKGLKI 199 G DL+ I+ + + +ED RILR RF Y + ++ L ++ L Sbjct: 597 GRKDLKEGLIRILYN--LSFVEDPTRILRAIRFEQRYKFQIEAETLRLARDAIDRRLLGK 654 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 LS +RI E+ +LE K+PL A+ M G+++ + +V+ + + + +V W Sbjct: 655 LSHKRILHELILILEEKDPLPALRRMDEIGVWEYVMPEVR-LDSETWIMLRRVPRVLGWL 713 Query: 260 IDSLL---------RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 + L +V++ ++ + ++ R++ L+ + Sbjct: 714 AERWLNIGLRSWVVYLLVILQKLPDSAVEEIVHRYRFDRDVTEILLMGREVPGLAVEIEE 773 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + L ++ I L N +V + + + G D+ Sbjct: 774 IQSLSMSDLNKKLRKLSGEHIAFLLLCLN----RPESWERVARYLELKQDVRVKVNGYDL 829 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G+ G IL ++ + E++ L++K I+ + Sbjct: 830 KALGLREGPVYQKILSDLYDANLDGLVKTYDEEIE-LVKKWISEGR 874 >gi|270156669|ref|ZP_06185326.1| poly(A) polymerase [Legionella longbeachae D-4968] gi|269988694|gb|EEZ94948.1| poly(A) polymerase [Legionella longbeachae D-4968] Length = 402 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 14/232 (6%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L+ L ++ IVGG+VRD L++ + +D D+AT P++V +F R + Sbjct: 2 LNRLIGAGFQAYIVGGSVRDLLLHKAPKDFDVATNATPNQVKSLFRNGRI----IGRRFK 57 Query: 79 TIKIICRKKYFDITTLRSDLITD--------GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + I+ ++ ++ T RS + D G + D+ RRDFTIN+LY + Sbjct: 58 LVHILFHREIIEVATFRSHVALDENQVTNERGMLVRDNAYGSLDEDAWRRDFTINSLYYN 117 Query: 131 QQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 +ID+ GG+ D+ R I+ IGD R ED +R+LR RF A K + ++ Sbjct: 118 INDSSIIDFTGGVKDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNFK-LAAETAAP 176 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + +S+ R++ E+ KL + N + G+F +F Q++ Sbjct: 177 FPEISHLITHVSNSRLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFPQTQKL 228 >gi|28198114|ref|NP_778428.1| polynucleotide adenyltransferase [Xylella fastidiosa Temecula1] gi|182680742|ref|YP_001828902.1| poly(A) polymerase [Xylella fastidiosa M23] gi|28056174|gb|AAO28077.1| polynucleotide adenyltransferase [Xylella fastidiosa Temecula1] gi|182630852|gb|ACB91628.1| poly(A) polymerase [Xylella fastidiosa M23] gi|307579206|gb|ADN63175.1| polynucleotide adenyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 394 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F Sbjct: 11 TISRKDIS-PNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLF 69 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ + +GR + Sbjct: 70 RSCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIED 125 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT NALY + V DYVGG D+++R ++ IGD R ED +R+LR R Sbjct: 126 DATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLA 185 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 A G I++ + L ++ R++ E+ KL + + + + + + G+ + Sbjct: 186 AKLG-FEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVVSFEALEDFGLIDVL 244 Query: 235 FLD 237 F + Sbjct: 245 FPE 247 >gi|319792304|ref|YP_004153944.1| poly(a) polymerase [Variovorax paradoxus EPS] gi|315594767|gb|ADU35833.1| poly(A) polymerase [Variovorax paradoxus EPS] Length = 543 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 132/310 (42%), Gaps = 45/310 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D N+++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F + Sbjct: 38 PALVDERAKNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRA- 96 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 97 ---FIIGRRFRIVHVVYGRGREHEVIEVSTFRAYMDSAAAEQVAGNERTSKGELASMKHA 153 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 + GR + + D+ RRDFT+NA+Y D + V+DY G+ D + T++ IGD Sbjct: 154 VDASGRVLRDNVWGPQEEDAARRDFTVNAMYYDPANQVVVDYHNGIKDAQKLTLRMIGDP 213 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A +++ I++ K L + R++ E+ KLL+ Sbjct: 214 VTRYREDPVRIIRAIRFSAKLAALGFKMEAKTAAPLIESSKLLADVPQSRMFDEMLKLLQ 273 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI-------EAEQVFEWKIDSLLRFI 267 + + I + G+ I+ + ++ +++ Q +V E K + + Sbjct: 274 TGHAIATIEQLRKLGLATGIYP-LLDVVVERADQPFVKAALQDTDRRVGEGKPVAPSFLL 332 Query: 268 VLISWQDKKS 277 + W D + Sbjct: 333 ACVLWADVRD 342 >gi|261380940|ref|ZP_05985513.1| multifunctional CCA protein [Neisseria subflava NJ9703] gi|284796196|gb|EFC51543.1| multifunctional CCA protein [Neisseria subflava NJ9703] Length = 420 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 137/341 (40%), Gaps = 39/341 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D + ++ + K P + Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVVVGADAQTMLAQGYQPVGKDFPVFLHP--------D 58 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T YA F D + D +RRD TIN++ D G +ID GG Sbjct: 59 SHEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINSMAQDSDGTIIDPFGGQ 118 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + D + L+ + L Sbjct: 119 QDLAAGILRHVSPA---FAEDPVRILRIARFAARYGFQIADETMSLMRQMVENGEADALV 175 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V D L V + + +ID Sbjct: 176 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEV-----DALFGVPQRAD-YHPEID 229 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY- 320 S + ++ ++ A + +L RY + + K + +I Y + Sbjct: 230 SGIHTLM---------VVQRAAEMNLSLAERYAAL----LHDLGKAKTPADILPKHYGHD 276 Query: 321 --GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 G + + + A + + C +L + +K Sbjct: 277 LNGVEPVREVNQRLRAPKHCAELAELVCRWHIMLHQVGQFK 317 >gi|226940321|ref|YP_002795395.1| PcnB [Laribacter hongkongensis HLHK9] gi|226715248|gb|ACO74386.1| PcnB [Laribacter hongkongensis HLHK9] Length = 450 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 86/407 (21%), Positives = 147/407 (36%), Gaps = 50/407 (12%) Query: 1 MVSIVQHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 ++ VQH D + + S L + ++ +VGGAVRD L+ +D D+AT P+ Sbjct: 25 VIPFVQHGVRRDQVSPSALKVTSRLQEAGFEAYVVGGAVRDLLIGHEPKDFDVATNATPE 84 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSD-----LITDGRYAKVVFTR 111 V R+F ++R + + ++ R + ++TT R D GR Sbjct: 85 EVHRLFRRSRI----IGRRFRIVHVVFGRDEVIEVTTFRGDGRDLQTTESGRIISDNSYG 140 Query: 112 DWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 DS RRDFT NALY + + + DY G+ D+ R + IG R ED +R+LR Sbjct: 141 SMADDSRRRDFTANALYYNPADESIHDYHHGVRDVTARRLVMIGQPIERYKEDPVRMLRA 200 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 R A G +ID L+ ++ R++ E+ K+L + + + G+ Sbjct: 201 VRLAAKLG-FSIDESTRKPISHLAPLLRDVAQARLFDEMLKMLHSGASWACLTRLRAEGL 259 Query: 231 FKEIFLDVQE------------ISLDQLSQVI------------------EAEQVFEWKI 260 K IF + ++LDQ Q + E ++ + Sbjct: 260 HKGIFPLLDAVLDQPDGSSFVKLALDQTDQRLKNGRGISDGFLLAALLWGEVRTEWQRRQ 319 Query: 261 DSLLR-FIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 D+ + L D + + ++P R FLI+ Q + F L Sbjct: 320 DTGEKPLPALFDAMDVVEA-KLVDRLAIP---RRFLITMREIWSMQPRYENRSGSRPFKL 375 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 A Q+ + + + Sbjct: 376 LEQPRFRAGYDFLCLRASVGEVPQELAHWWEKFQYADSEARNGMLVR 422 >gi|254499345|ref|ZP_05112016.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella drancourtii LLAP12] gi|254351450|gb|EET10314.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella drancourtii LLAP12] Length = 462 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 14/237 (5%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + + +L+ L G ++ IVGG+VRD +++ + +D D+AT P+++ +F R Sbjct: 58 NALKVLNRLISGGFQAYIVGGSVRDLMLHKAPKDFDVATNATPNQIKNLFRNGRI----I 113 Query: 74 SISYGTIKIICRKKYFDITTLRSDLITD--------GRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ ++ ++ T RS D G + D+ RRDFTIN Sbjct: 114 GRRFKLVHVLFHREIIEVATFRSHEAVDESQQTNERGMLVRDNAFGSLDEDAWRRDFTIN 173 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 +LY + +ID+ GG+ D++++ I+ IGD R ED +R+LR RF A N+ Sbjct: 174 SLYYNITDSTIIDFTGGVKDVQDKLIRMIGDPVTRYKEDPVRMLRAVRFSAKL-HFNLAP 232 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + + +SS R++ E+ KL + N + G+F+ + + Sbjct: 233 ETEAPFPDISYLITHVSSSRLFDEMTKLYQCGNAETVQKLLLQYGLFQHLCPQTTAL 289 >gi|15836832|ref|NP_297520.1| polynucleotide adenyltransferase [Xylella fastidiosa 9a5c] gi|9105036|gb|AAF83040.1|AE003876_5 polynucleotide adenyltransferase [Xylella fastidiosa 9a5c] Length = 421 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 15/243 (6%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + K + + +L L + + +VGGAVRD L+ +D D+AT P+++ ++F Sbjct: 11 TISRKDIS-PNALRVLYRLREAGFGAYLVGGAVRDLLVGGHPKDFDLATDATPEQIKQLF 69 Query: 64 SKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL--------ITDGRYAKVVFTRDWKA 115 R + ++ ++ ++ T R++ + +GR + Sbjct: 70 RSCRL----IGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELENGRLVCDNVYGTIED 125 Query: 116 DSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT NALY + V DYVGG D+++R ++ IGD R ED +R+LR R Sbjct: 126 DATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVRRYQEDPVRMLRAVRLA 185 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 G I++ + L ++ R++ E+ KL + + + + + + G+ + Sbjct: 186 VKLG-FEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAVASFEALEDFGLIDVL 244 Query: 235 FLD 237 F + Sbjct: 245 FPE 247 >gi|316984249|gb|EFV63225.1| poly(A) polymerase family protein [Neisseria meningitidis H44/76] Length = 470 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 33 AENVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 89 RRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 148 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ + IGDA R ED +RILR R G + + Sbjct: 149 PEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I L + + + Sbjct: 208 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNALRV 261 >gi|212633983|ref|YP_002310508.1| polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain-containing protein [Shewanella piezotolerans WP3] gi|226702084|sp|B8CJF9|CCA_SHEPW RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|212555467|gb|ACJ27921.1| Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein [Shewanella piezotolerans WP3] Length = 408 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 90/404 (22%), Positives = 155/404 (38%), Gaps = 57/404 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+ L ++D D + P++++ K K P + T + Sbjct: 2 KIYLVGGAVRDSLLELPIKDRDYMVVGATPEQMLAQGYKQVGKDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D LRRD TINA+ D QG D G+ Sbjct: 57 ---EYALARTERKTAAGYGGFSVDAAPNVTLEQDLLRRDLTINAIAQDDQGNRYDPFNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + DA +ED LR+LR RF A + ++ L+ I L+ Sbjct: 114 ADLNARLLRHVSDA---FIEDPLRVLRVARFAARFHSLGFNIAAETMALMTKISQSGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ--------- 248 L++ER++ E++K L + P + G +F ++ + + Q Q Sbjct: 171 ALTAERVYIELDKSLTSDAPQVFFSVLKECGALAVLFPEIDALFGIPQPEQWHPEIDSGV 230 Query: 249 --VIEAEQVFEWKIDSLLRFIVLISWQDKK-------------------SILSMAKKFSL 287 ++ EQ + D+ +RF L+ K I ++ ++F + Sbjct: 231 HTLMVLEQAAKLSNDNAVRFASLVHDLGKALSPKASLPKHHGHGQKGLPLIKALCERFRV 290 Query: 288 PREIRYFLISFFNCNF---NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P E R + + + N L I KLF +L+ L + + Sbjct: 291 PNEYRDLALLVSDQHQNIHNAHELRADTIVKLFDKADFWRKPHRLEQLLLSCEADAKGRT 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 + S I K ++ D++ G G ++ L Sbjct: 351 GFELSPYPQASYIQQCFKAASNVSVKDIIDAGYK-GAEIRQQLT 393 >gi|85712840|ref|ZP_01043882.1| tRNA nucleotidyltransferase [Idiomarina baltica OS145] gi|85693304|gb|EAQ31260.1| tRNA nucleotidyltransferase [Idiomarina baltica OS145] Length = 366 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 85/395 (21%), Positives = 149/395 (37%), Gaps = 48/395 (12%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ V D D + PD+++ + + K P + T + Sbjct: 8 YLVGGAVRDQLLGCPVGDKDYVVVGATPDQMLALGYQQVGKDFPVFLHPQTRE------- 60 Query: 89 FDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ Y T D RRD TINA+ D+ G +ID GG D Sbjct: 61 -EYALARTERKQGQGYTGFQVNTETTITLTQDLERRDLTINAIAEDEHGHLIDPYGGQQD 119 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 + + ++ + A +ED LR+LR RF+A + ++ L+ ++ LK L Sbjct: 120 IERKLLRHVSPA---FVEDPLRVLRVARFYARFKPLGFTVAQETKNLMKAMARSGELKTL 176 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD--VQEISLDQLSQVIEAEQVFEW 258 +ER+W E K L P I + + ++ + + S+ L Q+ + Q Sbjct: 177 VAERVWREWEKALATDAPAAFIELLVEIDAWSQVMPELTISPSSVSDLQQISQVTQCTHT 236 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 + +L ++ D I +++K LP + + + F S +L Sbjct: 237 RFATL-----MLRQGDTFEINLLSQKLRLPNQYKRLAQAVFGSRKWLLQPSPLSPAQLLE 291 Query: 319 LY-GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 L G + +I H ++ + V + + +V G+ Sbjct: 292 LANGADMWRQPERIEQLAHIRHIARPNISDGCIVSALTQARS-----IDASSIVARGLK- 345 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 G +VG +L E L + R LI Sbjct: 346 GPEVGQVLNE--------------ERLLAIKRGLI 366 >gi|217974315|ref|YP_002359066.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS223] gi|254813698|sp|B8EBU8|CCA_SHEB2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|217499450|gb|ACK47643.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS223] Length = 416 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 153/355 (43%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D + P++++++ + K P + K Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINA+ D++G + D G+ Sbjct: 54 NQQEYALARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + DA +ED LRILR RF A + ++ L+ I A L Sbjct: 114 EDLNARLLRHVSDA---FVEDPLRILRVARFAARFHALGFHIAAETLALMRQISASDELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E++K L +P ++ G + +F ++ L V + E+ + Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIFA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L+ A + + +R+ + + K LS E + Sbjct: 225 EIDTGVHTLM---------VLAQAALLTDDKSVRFAAL----VHDLGKALSPKEHLPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K L + AL +T + ++SD F L + +VK Sbjct: 272 GHGQKG----LPLIKALCTRLRVPNETRDLALLVSDQHQNVHQAFELRAETIVKI 322 >gi|50122509|ref|YP_051676.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pectobacterium atrosepticum SCRI1043] gi|73619772|sp|Q6D160|CCA_ERWCT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|49613035|emb|CAG76486.1| tRNA nucleotidyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 414 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 143/345 (41%), Gaps = 34/345 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+ L V + D + P+ ++ + K P + I R Sbjct: 2 KIYLVGGAVRDSLLGLPVTEKDWVVVGATPEHLLAQGYQQVGKDFPVFLHP-----ISRD 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G + D LRRD TINA+ ++G +ID G DL Sbjct: 57 EYALARTERKSGKGYTGFVCHAEPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 NR ++ + DA ED LR+LR RF A + ++ L+ + + L L+ Sbjct: 117 DNRVLRHVSDA---FSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAFLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L +P + + G +F ++ + + A + +ID Sbjct: 174 PERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEIDNLY------GVPAPAKWHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ ++MA + S ++R+ + C+ K L+ PE+ +G Sbjct: 228 TGIHTMM---------TVAMAARLSPDIDVRFATL----CHDLGKGLTPPELWPRHLGHG 274 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + L N +D ++ D++H + L P T Sbjct: 275 PAGVKLVEALCQRLRVPN-PIRDLAKLVAEYHDLVHTVQVLQPKT 318 >gi|260771906|ref|ZP_05880824.1| tRNA nucleotidyltransferase [Vibrio metschnikovii CIP 69.14] gi|260613198|gb|EEX38399.1| tRNA nucleotidyltransferase [Vibrio metschnikovii CIP 69.14] Length = 404 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 146/350 (41%), Gaps = 33/350 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L++L V D D + P+++ + + K P + T + Sbjct: 2 QVYLVGGAVRDQLLSLPVHDQDWVVVGSSPEQMRQAGYQAVGKDFPVFLHPETKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTGSGYTGFACYYAPDVSLEEDLARRDLTINAIAQDNTGKLIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ + DA +ED LR+LR RF A ++ L+ I L Sbjct: 114 RDLHNRLLRHVSDA---FIEDPLRVLRVARFAAKLAHLGFVIANETMQLMTQIAQSGELH 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ERIW E +K L NP + + G I ++ D+L V + +Q + Sbjct: 171 HLTAERIWQEWHKSLSTANPEVFLSTLRECGALAIILPEI-----DRLFGVPQPKQ-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKK 315 +ID+ + ++ ++ Q K S+A +F+ ++ + + K + I Sbjct: 225 EIDTGVHTLM-VAAQAAKLSPSIAVRFAAQVHDVGKGVTPQSEWPSHKMHCHTGVKIINA 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKPL 362 L L + + ++N+ L++L + W+KP Sbjct: 284 LCERVRIPNECKDLALLVCEQHSNIHRAAELKASTKLKILDKLDVWRKPE 333 >gi|309379411|emb|CBX21978.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 453 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|145219609|ref|YP_001130318.1| metal dependent phosphohydrolase [Prosthecochloris vibrioformis DSM 265] gi|145205773|gb|ABP36816.1| metal dependent phosphohydrolase [Chlorobium phaeovibrioides DSM 265] Length = 470 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 87/452 (19%), Positives = 166/452 (36%), Gaps = 58/452 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPT 73 L I + ++ +VGG VRD ++ DIDI P + + K Sbjct: 9 LFRIGDIADRSGMDCYLVGGFVRDMILQRPCTDIDIMVIGDPVPFAKQIREELHGKNFVL 68 Query: 74 SISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + T ++ ++ R + + T + D RRDFT+NAL Sbjct: 69 FERFRTAQLEIPGPEGVHYKLELVGARKESYNPESRKPITLTGTLEDDLARRDFTLNALA 128 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G +ID GL DL+ ++ D +D LR++R RF A G Sbjct: 129 LCLNRQGRGDIIDQHNGLRDLKEEILRTPLDPEQTFSDDPLRMMRAARFAAQLG-FTPAE 187 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SL 243 + + A K + I+S ERI +E K++ + P ++ ++ G+ +EI DV + + Sbjct: 188 EVIEAMETMHKRITIVSRERISTEFLKIMSSPRPSVGLIILHQTGLLQEIMPDVATMAGI 247 Query: 244 DQLSQVIEAEQVFE----------WKIDSLLRFIVLISWQDKKSILSMAKKF-------- 285 +Q+ + + +F + LR L+ K + +K+ Sbjct: 248 EQVDGMGHKDTLFHTFKVIDNLSPHTDNLWLRVAALLHDIGKPATKRFSKQHGWTFHGHD 307 Query: 286 --------SLPREIR------YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 + RE+R ++ + LS EI L Sbjct: 308 AVGIRTAAKIFREMRWPMSHLDYVQKMIRLHHRPIPLSKEEISDSAVRRLMFDAGEDLID 367 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPL-------------FPLTGDDVVK-YGIPP 377 +AL ++T ++ + +++++ + +K + P+ G D++K GI Sbjct: 368 LMALCRADVTSKNPRKVAKIMNNFTNVEKKIEEVGEKDLLAKWRPPIDGLDIMKELGIGE 427 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G+ +G I + I+ +E ++ Sbjct: 428 GRLLGTIKKQMENAIIDGRIPYDREAAITFIK 459 >gi|239998610|ref|ZP_04718534.1| PcnB [Neisseria gonorrhoeae 35/02] gi|240112526|ref|ZP_04727016.1| PcnB [Neisseria gonorrhoeae MS11] gi|240125359|ref|ZP_04738245.1| PcnB [Neisseria gonorrhoeae SK-92-679] gi|254493329|ref|ZP_05106500.1| poly(A) polymerase [Neisseria gonorrhoeae 1291] gi|268594467|ref|ZP_06128634.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02] gi|268598595|ref|ZP_06132762.1| poly(A) polymerase [Neisseria gonorrhoeae MS11] gi|268683962|ref|ZP_06150824.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679] gi|226512369|gb|EEH61714.1| poly(A) polymerase [Neisseria gonorrhoeae 1291] gi|268547856|gb|EEZ43274.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02] gi|268582726|gb|EEZ47402.1| poly(A) polymerase [Neisseria gonorrhoeae MS11] gi|268624246|gb|EEZ56646.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679] gi|317163883|gb|ADV07424.1| hypothetical protein NGTW08_0452 [Neisseria gonorrhoeae TCDC-NG08107] Length = 452 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IG+A R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDI-PDIHPLLNALRV 268 >gi|225075340|ref|ZP_03718539.1| hypothetical protein NEIFLAOT_00344 [Neisseria flavescens NRL30031/H210] gi|224953515|gb|EEG34724.1| hypothetical protein NEIFLAOT_00344 [Neisseria flavescens NRL30031/H210] Length = 420 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 123/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D ++ + K P + Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVVIGADAQTMLAQGYQPVGKDFPVFLHP--------D 58 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 59 SHEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGTIIDPFGGQ 118 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + D + L+ + L Sbjct: 119 QDLAAGILRHVSPA---FAEDPVRILRISRFAARYGFQIADETMSLMRQMVENGEADALV 175 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + + LD L V + + +ID Sbjct: 176 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPE-----LDALFGVPQRAD-YHPEID 229 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ ++ A + +L RY + + K + +I Y + Sbjct: 230 SGIHTLM---------VVQRAAEMNLSLAERYAAL----LHDLGKAKTPADILPKHYGHD 276 >gi|295111141|emb|CBL27891.1| uncharacterized domain HDIG [Synergistetes bacterium SGP1] Length = 456 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 162/460 (35%), Gaps = 83/460 (18%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSL-------------------MNLSVQDIDIATT 53 + ++ L + VGG VRDSL ++ + D DIAT Sbjct: 5 PAALKAVAALRHAGFDAYPVGGCVRDSLVPLIGTPQNPSDPASVRAILDCAPSDWDIATN 64 Query: 54 ILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW 113 P+ V I R P + + T+ +ITT R T Sbjct: 65 AAPEHVRSILGG-RLAAKP-GLRHDTVMTSVDGTPVEITTFRGGAAT------------I 110 Query: 114 KADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 + D RDFT+NA+ + G+++D GG ND+R+ ++ +GD R ED LRILR RF Sbjct: 111 EEDLACRDFTVNAMALNADGRLLDPFGGANDIRSGVLRAVGDPAERFREDGLRILRGLRF 170 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A +G +I+ D + K L+ ++ ER +E+ K+L + + +N + Sbjct: 171 AAVFG-WDIEPDTALVMHMEKDLLRDIAVERTRAELVKMLCGVHVGPVLRKFWN--VLSV 227 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEWKID--------SLLRFIVLISWQDKKS-------- 277 ++ + + V++ I +LR L+ K + Sbjct: 228 AAPEIAPTVGFRQNNRHHHLDVWKHTIAVVEAAPAVPILRLAALLHDLGKPACYTVDAAG 287 Query: 278 --------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 + + EIR +++ + L+ ++ Sbjct: 288 IGHFYGHAARSAEIARDIMARLRFSDEIRRRVVTLVEHH--GDILTDTPSRRTVRRMVSN 345 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL--------------FPLTGDD 369 + + LAL ++ + ++ + +++ L + G D Sbjct: 346 LGVDVFHDLLALRRADIAGHKVETCGKAMAACVRFEELLAELEAENACFSLKDLAVRGGD 405 Query: 370 VVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +++ G G +G L + +E L LLR Sbjct: 406 IMELGYR-GPGIGKALRALLDAVVEERVPNEREALLELLR 444 >gi|325144127|gb|EGC66434.1| poly(A) polymerase [Neisseria meningitidis M01-240013] Length = 453 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G++D+ R + IG+A R ED +RILR R G + Sbjct: 157 PEKEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSQATAGP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|225012713|ref|ZP_03703148.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacteria bacterium MS024-2A] gi|225003246|gb|EEG41221.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Flavobacteria bacterium MS024-2A] Length = 479 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 168/470 (35%), Gaps = 65/470 (13%) Query: 7 HKWFHDSDLINILSLLNKGEDKS----CIVGGAVRDSLMNL-SVQDIDIATTILPDRVMR 61 K F + +L + +S ++GG VRD L+N +DIDI + Sbjct: 4 QKDFSKVLATPLFEVLQQTVAESNTLGYVIGGFVRDHLLNRSHKKDIDIVALDSGIDLAI 63 Query: 62 IFSKT--RYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 K + +YGT + + R + + V + D R Sbjct: 64 AVQNKLKGAKAVQVFKTYGTAMVHWNNTDLEFVGARKESYSKESRNPEVKPGTLEDDQNR 123 Query: 120 RDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RDFTINAL D G +ID GL DL ++ D +D LR+LR RF Sbjct: 124 RDFTINALAISLNKDDFGLLIDPFNGLKDLEEGVLRTPLDPDITYSDDPLRMLRAIRFAT 183 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + I SD + + + + I++ ERI E+NK+L P + + G+ + I Sbjct: 184 QL-DFTIASDSYDSISRNAERIDIITKERIVEELNKILMTPKPSKGFILLEKTGLLQRIL 242 Query: 236 LDVQEI-SLDQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSILS---- 280 ++ ++ ++++ + + D LR+ L+ K Sbjct: 243 PELIDLKGVEEIEGQKHKDNFYHTLEVVDNLCKNSDDLWLRWAALLHDIGKAPTKKFKPP 302 Query: 281 ------------------MAKKFSLPREIRYFLISF------FNCNFNQKTLSIPEIKKL 316 + K+ +P + + ++ ++ I++L Sbjct: 303 VGWTFHNHEFVGAKMTYNLFKRMKMPLNEKMKFVQKMVFMSSRPIIIAEEQVTDSAIRRL 362 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCF---------ILQVLSDIIHWKKPLFPLTG 367 + G + + + A + + + ++ + H + P++G Sbjct: 363 VFDAGPFI-DDLITLCEADITTKNPERFERYHNNFKIVREKIILVEEKDHLRNFQPPISG 421 Query: 368 DDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + ++KY + P K++G I K+ + +E L+K+ + + Sbjct: 422 ETIMKYFDLKPSKEIGLIKEAIKEAILEGEIPNERE---AALKKMKSEGK 468 >gi|293399437|ref|ZP_06643590.1| poly(A) polymerase [Neisseria gonorrhoeae F62] gi|291610006|gb|EFF39128.1| poly(A) polymerase [Neisseria gonorrhoeae F62] Length = 451 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 11/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKGHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IG+A R ED +RILR R G + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSEQTAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDI-PDIHPLLNALRV 268 >gi|240080315|ref|ZP_04724858.1| PcnB [Neisseria gonorrhoeae FA19] gi|240123108|ref|ZP_04736064.1| PcnB [Neisseria gonorrhoeae PID332] gi|240127811|ref|ZP_04740472.1| PcnB [Neisseria gonorrhoeae SK-93-1035] gi|268596463|ref|ZP_06130630.1| poly(A) polymerase [Neisseria gonorrhoeae FA19] gi|268681735|ref|ZP_06148597.1| poly(A) polymerase [Neisseria gonorrhoeae PID332] gi|268686207|ref|ZP_06153069.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035] gi|268550251|gb|EEZ45270.1| poly(A) polymerase [Neisseria gonorrhoeae FA19] gi|268622019|gb|EEZ54419.1| poly(A) polymerase [Neisseria gonorrhoeae PID332] gi|268626491|gb|EEZ58891.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035] Length = 452 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IG+A R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDI-PDIHPLLNALRV 268 >gi|240014103|ref|ZP_04721016.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae DGI18] gi|240112973|ref|ZP_04727463.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae MS11] gi|240115727|ref|ZP_04729789.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae PID18] gi|240121665|ref|ZP_04734627.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae PID24-1] gi|268599053|ref|ZP_06133220.1| multifunctional CCA protein [Neisseria gonorrhoeae MS11] gi|268601406|ref|ZP_06135573.1| multifunctional CCA protein [Neisseria gonorrhoeae PID18] gi|268583184|gb|EEZ47860.1| multifunctional CCA protein [Neisseria gonorrhoeae MS11] gi|268585537|gb|EEZ50213.1| multifunctional CCA protein [Neisseria gonorrhoeae PID18] Length = 410 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 124/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G+ K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|238022809|ref|ZP_04603235.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147] gi|237866012|gb|EEP67148.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147] Length = 594 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 10/236 (4%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 + + +L L++ ++ +VGGAVRD L+ + +D D+AT+ P++V R+F ++R Sbjct: 183 RNQAALRVLESLHRAGFEAYLVGGAVRDLLLGIEPKDFDVATSATPEQVHRLFRRSRI-- 240 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + ++ + +++T RS GR + + D++RRDFT NA Sbjct: 241 --IGRRFQIVHVMQGSETIEVSTFRSGGRVMQNASGRIMRDNAYGSLEQDAMRRDFTCNA 298 Query: 127 LYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D +V+D+ GG D+ R + IGDA R ED +R+LR R G +++ Sbjct: 299 LYYDVAAQQVLDFHGGWEDVAVRRLVMIGDAAERYQEDPVRMLRAARLSGKLG-FAVEAA 357 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + L+ R++ E+ K+L + N + + G+ + + + + Sbjct: 358 TAAPIGEMGLLLRHEPVARLFDELLKILLSGNAAGCLAALRRLGLTEAVHPLLSAM 413 >gi|226327176|ref|ZP_03802694.1| hypothetical protein PROPEN_01041 [Proteus penneri ATCC 35198] gi|225204394|gb|EEG86748.1| hypothetical protein PROPEN_01041 [Proteus penneri ATCC 35198] Length = 371 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 145/360 (40%), Gaps = 57/360 (15%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ + V+D D + P+ +++ + K P + T + Sbjct: 4 YLVGGAVRDQLLQIPVKDRDWVVVGATPEELLQQGYQQVGKDFPVFLHPDTHE------- 56 Query: 89 FDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + Y + D RRD TINA+ G+ ID G++D Sbjct: 57 -EYALARTERKSGSGYTGFTCYAAPDVTLEDDLARRDLTINAIAYSANGEYIDPYQGIDD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 + R ++ + DA ED LR+LR RF A + ++ L+ ++ L L Sbjct: 116 INARLLRHVSDA---FSEDPLRVLRVARFAARFAPLGFSVAPETLQLMKTMAQSGELNAL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER+W E K E+ P + G K +F ++ + + A + + +I Sbjct: 173 TAERVWKETEKAFESHAPQVYFEVLRQCGALKILFPEIDALF------GVPAPEKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ +L++A + + +R+ + C+ K L+ PE + + Sbjct: 227 DTGIHAMM---------VLNIASQLTDDIAVRFSAL----CHDLGKGLTPPENWPHHHGH 273 Query: 321 GDKVM------------------IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 G + +A+L H + + I+++ I W+KP Sbjct: 274 GPAGVPLVEALCQRYRIPNHIRDLARLTAKFHDHIHRIDRMRPSKIIRLFDAIDAWRKPE 333 >gi|78188698|ref|YP_379036.1| HDIG [Chlorobium chlorochromatii CaD3] gi|78170897|gb|ABB27993.1| HDIG [Chlorobium chlorochromatii CaD3] Length = 476 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 83/472 (17%), Positives = 172/472 (36%), Gaps = 59/472 (12%) Query: 1 MVSIVQHKWFHDSDLI-NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 M ++ F D++ I + ++ + +VGG VRD +M D+DI T P Sbjct: 1 MKALPAITPFAIPDILCRIGDIADREDAACYLVGGYVRDLMMKRPCTDVDIMITGDPVPF 60 Query: 60 MRIFSKT-RYKVIPTSISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDW 113 + + + + + T ++ ++ R + + Sbjct: 61 AHMVQEELQGRNFVLFERFRTAQLELDDPNLGTFKVELVGARKESYNSDSRKPITLVGTL 120 Query: 114 KADSLRRDFTINALYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILR 169 + D +RRDFTINAL ++ V D G+ D+ + ++ + +D LR++R Sbjct: 121 EDDLMRRDFTINALAMRLNREERYTVTDLFNGMEDMEAKILRTPLEPLQTFSDDPLRMMR 180 Query: 170 FFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG 229 RF A + + + L A + + I+S ER+ E K++ P ++ ++ G Sbjct: 181 AARFAAQL-DFTLLPNALEAIRAMHERIHIVSMERVSHEFLKIMRTHRPSVGLLILHETG 239 Query: 230 IFKEIFLDVQEI-SLDQLSQVIEAEQVFE----------WKIDSLLRFIVLISWQDKKSI 278 + KE+ +V + ++Q+ + + +F + + LR L+ K Sbjct: 240 LLKELLPEVSAMAGIEQVDGMGHKDTLFHTMQVVDTVATYSDNLWLRIAALLHDVAKPVT 299 Query: 279 LSMAKK----------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 +K+ E ++ + LS EI Sbjct: 300 KRFSKQSGWTFHGHDAVGIKMVAKIFRTMRWSHEHLEYVQKLVRLHHRPIPLSKEEITDS 359 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-------------WKKPLF 363 L+ + L +++T ++ + +++S+ H K Sbjct: 360 AVRRLMFDAGEDLRDLMTLCRSDVTSKNPRKVARIMSNFNHVEAKIAEVGEKDQLAKWRP 419 Query: 364 PLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 P++G D+++ G+ GK VG I + I+ +E +RK+ Sbjct: 420 PISGQDIMEALGLAEGKAVGKIKKQMENAVIDGIIAYDREAALAYVRKVYEE 471 >gi|294794520|ref|ZP_06759656.1| polyA polymerase [Veillonella sp. 3_1_44] gi|294454850|gb|EFG23223.1| polyA polymerase [Veillonella sp. 3_1_44] Length = 472 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 94/462 (20%), Positives = 169/462 (36%), Gaps = 66/462 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + Sbjct: 3 EQANRILTVLEEAGHEAYIIGGAVRDILMHQKPHDFDIVTSARPDTVIEVLRSHDIQTTD 62 Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 S+G + + ++I T R++ R ++++ + D LRRDFT+N + Sbjct: 63 LVGKSFGVVVATLEGRQYEIATYRTERYGADSHRPEEIIYADTLEEDVLRRDFTVNGMAM 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ G+VID VGG D++++T++ IG+A R ED LR+ R RF A + D L A Sbjct: 123 NRFGEVIDLVGGRRDIKHKTLRTIGNAQERFEEDALRLFRACRFVAKLDFLPTE-DLLEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIF 235 KA + LS ER+ SE+++L+ + + + + I Sbjct: 182 MPKAFHRVPGLSLERVRSELDRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAHEVPIL 241 Query: 236 LDV-------QEISLDQLSQVIEAEQVF-EWKIDSLLRFIVLISW--------------- 272 ++ QE + V + D LR+ L+ Sbjct: 242 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLTLRWGALLHDVAKGMPTVRAVVNGR 301 Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNF-----------NQKTLSIPEI 313 + ++ + P+ + + N+K E Sbjct: 302 LTDRGHDTLGAEMTETLLTRLGYPKSFVRRVAWIVKNHMRFHYFVQNGEANEKKWIRKEA 361 Query: 314 KKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + + IA K+ A + + + P+ D+ Sbjct: 362 RSGEFRDSQIMRIAWEQLSKVCAADVLGCGKPYASTDGTLAFGECMADLSLEMPIHTKDL 421 Query: 371 --VKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + I GKKVG L + + N + L+ L Sbjct: 422 NYDERVIKLAGKKVGEGLQYLLGQVQNGVIPNEPDALYDALD 463 >gi|17547346|ref|NP_520748.1| polynucleotide adenylyltransferase [Ralstonia solanacearum GMI1000] gi|17429649|emb|CAD16334.1| probable polynucleotide adenylyltransferase protein [Ralstonia solanacearum GMI1000] Length = 514 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 37/269 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + S L + + IVGGAVRD L+ + +D D+AT P++V +F ++R Sbjct: 63 PKLLSRNAVKVTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVEALFRRSR 122 Query: 68 YKVIPTSISYGTIKIIC----RKKYFDITTLRS---------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 123 I----IGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVESEQVPAGKRVKRTELDHHTHA 178 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDA 156 GR + D+ RRDFT+NA+Y + V DY G+ D+R R ++ IGD Sbjct: 179 VDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDP 238 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 H R ED +R+LR RF A G +ID + + + + R++ E+ KLL + Sbjct: 239 HTRYREDPVRMLRVVRFAAKTG-FDIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSG 297 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + ++ + G+ + + + +++L+Q Sbjct: 298 HAWASLQELRKAGLHRGLLP-LLDVALEQ 325 >gi|237736527|ref|ZP_04567008.1| poly(a) polymerase [Fusobacterium mortiferum ATCC 9817] gi|229421569|gb|EEO36616.1| poly(a) polymerase [Fusobacterium mortiferum ATCC 9817] Length = 446 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 102/449 (22%), Positives = 185/449 (41%), Gaps = 44/449 (9%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K + D ++ IL +L K K IVGG VRD+L+ L +D D T I ++++ IFS+ Sbjct: 2 KMYLDRNIKLILDILQKNG-KGYIVGGYVRDALLGLEPKDCDFVTDIEYEKLLNIFSE-- 58 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTIN 125 Y +G I+I +++I +R D D + ++ FT++ D RRDFTIN Sbjct: 59 YSPKEIGKHFGIIQIKIDGVHYEIAKMRQDKGIPKDRKEQEIEFTKNIYEDLKRRDFTIN 118 Query: 126 ALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 A+ D + D+ ++T++F+G+ RI ED LRILR+FRF A K++D D Sbjct: 119 AIAFDGEKFYYGDSDSQKDIESKTLRFVGECKKRIEEDPLRILRYFRFLATKDLKHLDED 178 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 + K ++ L+ LS ERI E +K++ KN N + + + I + I + +E Sbjct: 179 -VEEISKYRELLQNLSVERIREEFDKIITGKNTYNILKILSDKKILEIIIPEWKECRGFN 237 Query: 246 LSQVIEAEQVFEW--------KIDSLLRFIVLISWQDKKSILSMAK-------------- 283 + V E +D + R + K S+ + Sbjct: 238 QRNIHHIYTVDEHILQALKETDMDLITRLAIFFHDIGKPKCFSLGEDGKGHFYNHELISA 297 Query: 284 --------KFSLPREIRYFLISFFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLA 334 + + + + + IKK+ + M+ ++ A Sbjct: 298 EMAKEIMGRLRYDKNSIEKVYRIIQYHLVYRIDNEEKFIKKMMNRLEKEDMLRYFQVLRA 357 Query: 335 L---HYNNLTHQDTCFILQVLSDIIHW----KKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 H + + ++ DI+ ++G ++++ G GK +G +L + Sbjct: 358 DRKTHRPPYNFEQIERLEKLYQDIVEKNLPISIKDLNISGKELLENGFKQGKNIGEVLKY 417 Query: 388 CKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + + +QE L L + + Sbjct: 418 LLNQVLEYPEYNTQEQLLKLALEYKKGRE 446 >gi|261392805|emb|CAX50386.1| poly(A) polymerase (PAP; plasmid copy number protein) [Neisseria meningitidis 8013] Length = 453 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I L + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNALRV 269 >gi|218767953|ref|YP_002342465.1| putative poly(A) polymerase [Neisseria meningitidis Z2491] gi|121051961|emb|CAM08269.1| putative poly(A) polymerase [Neisseria meningitidis Z2491] Length = 453 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGA+RD L+ + +D D+AT +P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRI----VG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|255022876|ref|ZP_05294862.1| tRNA CCA-pyrophosphorylase [Listeria monocytogenes FSL J1-208] Length = 232 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 67/215 (31%), Positives = 111/215 (51%), Gaps = 7/215 (3%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +L L ++ VGG+VRD L+N ++ D+DIAT+ P+ V IF + T Sbjct: 8 ALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQTS----YDTG 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I++GT+ + +++++TT R++ D R +V F R + D RRDFT+NA+ D+ Sbjct: 64 IAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIRSLEEDLKRRDFTMNAIAMDEH 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 + D G ++N+ IK +G A R ED LR++R RF + + +D + A Sbjct: 124 FTLHDPFSGQLAIQNKEIKAVGKASERFHEDALRMMRAVRFLSQL-DFELDKETEKALET 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 L+ S ERI E K+++ K AI + Sbjct: 183 QIALLQHTSVERITVEWXKMMKGKAAKRAIELLLK 217 >gi|46580063|ref|YP_010871.1| polyA polymerase family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449479|gb|AAS96130.1| polyA polymerase family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233937|gb|ADP86791.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris RCH1] Length = 904 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 84/416 (20%), Positives = 156/416 (37%), Gaps = 27/416 (6%) Query: 13 SDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 L+ +L + ++ VGG VRD L++ D+D+ R+F+ Sbjct: 468 PSLLALLQRAGRLGERLGVSVYAVGGFVRDLLLDRPNYDLDLVIEGDGVAFARVFAAEVG 527 Query: 69 KVIPTSISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + + T +I + D+ T R + V K D RRDFT Sbjct: 528 GRLREHAKFKTALVIFTDENGAEQRVDVATARLEYYEYPAALPTVELSSIKMDLFRRDFT 587 Query: 124 INALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 INAL G+++D+ G D++++ I+ + +ED RILR RF Y Sbjct: 588 INALAVQLDGAQFGRLVDFFGSQRDMKDKGIRVLH--SLSFVEDPTRILRAVRFAVRYDF 645 Query: 180 KN-IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + L+ + + LS RI+ E+ +LE + P+ + + + G+ + I + Sbjct: 646 SIGPQTQRLIKNALGLGLMGRLSGPRIFHELRLILEEQAPVECLARLEHFGVLEAIHP-L 704 Query: 239 QEISLDQLSQVIEAEQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKKFSLPR 289 +++ + + + EQV W L+ + L K S+A + +LP Sbjct: 705 FKLTPSRTNLLESTEQVLNWYRLLYLDEEPQRWLIYLLALCLNMKYKESASIADRLALPP 764 Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 R +S + +++ L ++ L + LH + + Sbjct: 765 SARNAFLSTRETLRSTGPKVEKWMREEGPLSELYALLKPLALEGVLHMMARSKSEDLR-R 823 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 V + + + GDD+ G+PPG G +L H ++ L Sbjct: 824 HVSQFLTRLQHEKLDINGDDLRAMGLPPGPAYGRVLQHVLAAKLDGHAPTRTVQLE 879 >gi|220933517|ref|YP_002512416.1| tRNA nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7] gi|254813701|sp|B8GUR8|CCA_THISH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|219994827|gb|ACL71429.1| tRNA nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7] Length = 409 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 80/418 (19%), Positives = 142/418 (33%), Gaps = 65/418 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V++ D + +++ + + + P + T + Sbjct: 2 KTYLVGGAVRDELLGLPVRERDWVVVGATAAQMLDLGYRQVGRDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y V + D LRRD TINA+ D+ G +ID G Sbjct: 57 ---EHALARTERKTAPGYRGFVVHAEPDVTLEEDLLRRDLTINAMARDEAGGLIDPFNGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED +RILR RF A + ++ L+ + A + Sbjct: 114 ADLEARLLRHVSPA---FAEDPVRILRVARFAARFAHLGFRVADETRALMRRMVAAGEVD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE----- 253 L ER+W E+ + L +P + + G +F +++ + E Sbjct: 171 ALVPERVWQEMERALGEGSPATFFEVLRDCGALAVLFPEIERLFGVPQPPKYHPEIDTGV 230 Query: 254 -------QVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 Q D+ +RF L K + ++ +F + Sbjct: 231 HTLMVLTQAARLSADATIRFAALTHDLGKGTTPADILPSHHGHEQRSVDLVHALCDRFRI 290 Query: 288 PREIRYFLISFFNCN---FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P R + + L + K + + FL + + Sbjct: 291 PNAYRDLAVMVARWHGYSHRALELRPDTVLKALEGLDAFRRPERFEPFLLACEADYRGRT 350 Query: 345 --TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN--------ILVHCKQEW 392 + ++ D+V G+ GK +G L K EW Sbjct: 351 GFEDRPYPQADYLRAAHARCLAISAKDLVNEGLT-GKAIGEALHARRVQALKQLKAEW 407 >gi|227115566|ref|ZP_03829222.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 414 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 36/346 (10%) Query: 28 KSCIVGGAVRDSLMNLSV--QDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 K +VGGAVRDSL+ L V +D + P+ ++ + K P + + R Sbjct: 2 KIYLVGGAVRDSLLGLPVIEKDW-VVVGATPESLLAQGYQQVGKDFPVFLHP-----VSR 55 Query: 86 KKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 +Y T R G + D LRRD TINA+ ++G +ID G D Sbjct: 56 DEYALARTERKSGKGYTGFVCHAAPDVTLEQDLLRRDLTINAIARTERGDLIDPYHGHRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L NR ++ + +A ED LR+LR RF A + ++ L+ + + L L Sbjct: 116 LENRVLRHVSNA---FSEDPLRVLRVARFAARFAHLGFQIAEETMALMQKMAHEGELAYL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W E K L +P + + G +F ++ + + A + +I Sbjct: 173 TPERVWKETEKALGTSSPDVYFQVLRDCGALAVLFPEIDNLY------GVPAPAKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ ++MA + S ++R+ + C+ K L+ PE+ + + Sbjct: 227 DTGIHTMM---------TVAMAARLSPEIDVRFATL----CHDLGKGLTPPELWPRHHGH 273 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 G + + L N +D ++ D++H + L P T Sbjct: 274 GPAGVKLVEALCQRLRVPN-PIRDLAKLVAEYHDLVHTVQVLQPKT 318 >gi|91216560|ref|ZP_01253526.1| putative polyA polymerase [Psychroflexus torquis ATCC 700755] gi|91185354|gb|EAS71731.1| putative polyA polymerase [Psychroflexus torquis ATCC 700755] Length = 474 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 85/458 (18%), Positives = 173/458 (37%), Gaps = 70/458 (15%) Query: 17 NILSLLNKGED----KSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSK--TRYK 69 I ++L++ D ++ ++GG VRD + +DID+ + + S+ Sbjct: 13 KIFNILSEAADDINVEAYVIGGFVRDFFLKRGKAEDIDVVAVGSGIELAKKVSEKLPGKP 72 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + +YGT + + R + T+ V D RRDFTINAL Sbjct: 73 PVKVFKTYGTAMLKIFDLEVEFVGARRESYTEDSRNPKVEQGTLADDQNRRDFTINALAL 132 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 GK++D GL DL+ + IK D +D LR++R RF + K ID Sbjct: 133 QLNKKDFGKLLDPFKGLEDLKTQLIKTPLDPEVTFSDDPLRMIRAIRFASQLHFK-IDQK 191 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLD 244 + A + + I+S ERI +E+NK+L+++ P +++ + + I ++ + +D Sbjct: 192 SIQAIKDHSERIDIVSKERIVTELNKILKSEKPSVGFKLLHDTNLLQRILPELTHLEGID 251 Query: 245 QLSQVIEAEQVFEW----------KIDSLLRFIVLIS----------------------W 272 ++ + + D LR+ L+ + Sbjct: 252 EIDGQKHKDNFWHTLEVVDNISLETNDVWLRWAALLHDIGKAPTKRFHKKIGWTFHGHEF 311 Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNC------NFNQKTLSIPEIKKLFYLYGDKVMI 326 + K + + K+ LP + L+ ++ +++L + GD Sbjct: 312 KGSKMVYQLFKRLKLPLNDKMKLVQKLVLLSSRPIAIVDDDVTDSAVRRLIFDTGDH--- 368 Query: 327 AKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK- 372 L + L ++T ++ + + + + P++G ++++ Sbjct: 369 --LDDLMMLCEADITTKNPKRYKKYHNNFKVVRHRIQEVEERDKVRNFQPPVSGKEIMET 426 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + I P ++VG I K+ ++ E + K Sbjct: 427 FQIEPCREVGEIKAKIKEAILDGDIPNDYEAAFQYMLK 464 >gi|260440461|ref|ZP_05794277.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae DGI2] gi|291043762|ref|ZP_06569478.1| multifunctional CCA protein [Neisseria gonorrhoeae DGI2] gi|291012225|gb|EFE04214.1| multifunctional CCA protein [Neisseria gonorrhoeae DGI2] Length = 410 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 124/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G+ K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|320539905|ref|ZP_08039564.1| putative fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Serratia symbiotica str. Tucson] gi|320030091|gb|EFW12111.1| putative fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Serratia symbiotica str. Tucson] Length = 414 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 145/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+++ V D D + P ++ I + K P + T + Sbjct: 2 KIYLVGGAVRDGLLDIPVFDRDWVVVGATPAELLAIGYQQVGKDFPVFLHPDTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ +G +ID G+ Sbjct: 57 ---EYALARTERKSGHGYTGFTCCAAPDVTLEEDLLRRDLTINAIARSSEGVLIDPYQGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 DL+ ++ + DA ED LR+LR RF A + +I + L+ + L Sbjct: 114 ADLQAHVLRHVSDA---FAEDPLRVLRVARFAARFAHLGFSIAEETLELMRHMAHSGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L++++P + + +F ++ + + A + Sbjct: 171 ALTAERVWQETEKALQSQHPQVYFQVLRDCDALAVLFPEINALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L++A + S E+R+ + C+ K L+ + + Sbjct: 225 EIDTGVHTMM---------TLAIAAQLSPAVEVRFSAL----CHDLGKGLTPQKCWPHHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + ++ L N +D ++ D+IH L P T Sbjct: 272 GHGLAGVRLVEELCQRLRIPN-PVRDLAKLVAEYHDLIHTVNKLRPQT 318 >gi|325134021|gb|EGC56676.1| poly(A) polymerase [Neisseria meningitidis M13399] Length = 453 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEVIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G++D+ R + IG+A R ED +RILR R G + Sbjct: 157 PEKEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSQATAGP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|319638294|ref|ZP_07993057.1| phosphatase [Neisseria mucosa C102] gi|317400567|gb|EFV81225.1| phosphatase [Neisseria mucosa C102] Length = 420 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 124/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D ++ + K P + Sbjct: 7 KTYLVGGAVRDHLLGLPVKDRDWVIVGADAQTMLAQGYQPVGKDFPVFLHP--------D 58 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 59 SHEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGTIIDPFGGQ 118 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKGLKILS 201 DL + ++ + A ED +RILR RF A YG + D + L+ + L Sbjct: 119 QDLADGILRHVSPA---FAEDPVRILRIARFAARYGFQIADETMSLMRQMVENGEADALV 175 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + + LD L V + + +ID Sbjct: 176 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPE-----LDALFGVPQRAD-YHPEID 229 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ ++ A + +L RY + + K + +I Y + Sbjct: 230 SGIHTLM---------VVQRAAEMNLSLAERYAAL----LHDLGKAKTPADILPKHYEHD 276 >gi|304396860|ref|ZP_07378740.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pantoea sp. aB] gi|304355656|gb|EFM20023.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pantoea sp. aB] Length = 421 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 153/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+NL V D D + T P+ ++ + + P + + R+ Sbjct: 13 KTFLVGGAVRDALLNLPVTDKDWVVTGSTPEAMLEQGYQQVGRDFPVFLHP-----VSRE 67 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R + G + D RRD TINA+ D+ G+++D G D+ Sbjct: 68 EYALARTERKNGKGYTGFVTWSAPDVTLEQDLQRRDLTINAIAQDENGELVDPYNGQRDI 127 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + +A ED LR+LR RF A + N ++ L+ + L L+ Sbjct: 128 ALRLLRHVSEA---FSEDPLRVLRVARFAARFAHLNFRIAPETQQLMQQMAESGELSNLT 184 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L A+NP + + G + +F ++ + I A + +ID Sbjct: 185 AERVWKETEKALSARNPQVYFQVLRDCGALQVLFPELDNLF------GIPAPIKWHPEID 238 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L+MA S ++R+ + + K L+ PE+ + +G Sbjct: 239 TGVHTLM---------TLAMAAALSSEIDVRFATLF----HDVGKALTPPELWPSHHGHG 285 Query: 322 D------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKKPL 362 + + +L++ A+ + + Q ++ + I W+KP Sbjct: 286 LAGVPLVEALCQRLRVPNAIRDLALIVTEFHDIVHTIERQSPASLVALFDRIDAWRKPQ 344 >gi|120556070|ref|YP_960421.1| polynucleotide adenylyltransferase region [Marinobacter aquaeolei VT8] gi|166233863|sp|A1U5G5|CCA_MARAV RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|120325919|gb|ABM20234.1| Polynucleotide adenylyltransferase region [Marinobacter aquaeolei VT8] Length = 373 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 140/386 (36%), Gaps = 26/386 (6%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + P+ +++ K P + T + Sbjct: 2 QTYLVGGAVRDKLLGLGVKDRDWVVVGATPEDMIQRGFKQVGADFPVFLHPDTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D RRD TINA+ + G ++D G Sbjct: 57 ---EYALARTERKQGRGYHGFSVYSAPDVSLEDDLRRRDLTINAMAETENGDLVDPFNGH 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL + ++ + +A ED LRILR RF A ++ L+ + L Sbjct: 114 ADLEQKKLRHVSEA---FAEDPLRILRTARFAARLQPLGFSICRETMALMRQMVTSGELG 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W E+ + L + P + G + + ++ + Q + A Q Sbjct: 171 DLVPERVWQEVQRALHEQAPGVFFDVLRELGALQVLIPELTDEQ--PFRQGLSALQCIHR 228 Query: 259 KI-DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF--LISFFNCNFNQKTLSIPEIKK 315 K + + L+S + ++ AK P + R L+ F N + + Sbjct: 229 KQGSTAQHYAALLSGVPEPDAVARAKAMKSPNDCRELTHLVGLFMAQLNGASPETRLTPE 288 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L DK + + L ++ + +T ++ GI Sbjct: 289 LAMELLDKADFWRRPDRFGVLLGTLACTLQSEPDHLIQQLELAAHRAQSVTPHPFLQKGI 348 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQ 401 GK +G + + I + L + Sbjct: 349 Q-GKALGEAIRKERVARITEALHLPE 373 >gi|284008583|emb|CBA75158.1| multifunctional Cca protein [includes [Arsenophonus nasoniae] Length = 412 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 89/408 (21%), Positives = 161/408 (39%), Gaps = 63/408 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P+ ++++ + K P + T + Sbjct: 2 QIYLVGGAVRDQLLGLPVSDRDWVVVGATPEDLIKLGFQQVGKDFPVFLHPKTRE----- 56 Query: 87 KYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T G + D LRRD TINA+ + G++ID G Sbjct: 57 ---EYALARTERKTGVGYTGFSCYAAPDVTIEEDLLRRDLTINAIAQTEDGQLIDPFHGE 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D++NR ++ + A ED LRILR RF A ++ ++ L+ + + L Sbjct: 114 QDIKNRLLRHVSAA---FAEDPLRILRVARFAARLAKQKFTIANETQSLMEKMIFNQELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +S+ER+WSE K L++ P +++ G +F ++ + L + E+ + Sbjct: 171 TISAERVWSETEKALQSSAPETYFHVLHDCGALAILFPEINQ--LFGIPSAAESHAAMDT 228 Query: 259 KIDSLL--------------RFIVLIS-----------WQDKKS--------ILSMAKKF 285 I +LL RF L W D + I +M + Sbjct: 229 GIHTLLTLKMAALLTDNIETRFAALCHDFGKALTPPEQWPDHRDHAIKAIPLIEAMCNRL 288 Query: 286 SLPREIRYF--LISFFNCNFNQKTLSIPEIKKLFYLYGD----KVMIAKLKIFLALHYNN 339 +P ++ L++ F+ +Q PE + D I +L I + Sbjct: 289 RIPNRMKELAKLVARFHQQIHQINQLQPESVINLFNQLDSWRKPERINQLAIACEADARS 348 Query: 340 LTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 Q+ Q I +K + ++ ++++ GI G + + L Sbjct: 349 WMGQEHITYPQAKFVIEAFKI-VQQVSSKNLIEQGIK-GIAIRDALTQ 394 >gi|259907107|ref|YP_002647463.1| tRNA nucleotidyl transferase [Erwinia pyrifoliae Ep1/96] gi|224962729|emb|CAX54184.1| tRNA nucleotidyl transferase [Erwinia pyrifoliae Ep1/96] gi|283476909|emb|CAY72771.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Erwinia pyrifoliae DSM 12163] Length = 407 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 77/361 (21%), Positives = 147/361 (40%), Gaps = 57/361 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L++L ++D D + P +++ + + + P + Sbjct: 2 KTYLVGGAVRDGLLDLPLKDKDWVVVGASPQQMLDLGYQQVGRDFPVFLHP--------D 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y V + D RRD T+NA+ D G D GG Sbjct: 54 SHEEYALARTERKSGQGYTGFVCYSAPDVTLEQDLARRDLTMNAIAQDTDGNYYDPYGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDL+ R ++ + A ED LR+LR RF A + N ++ L+ ++ L+ Sbjct: 114 NDLQRRLLRHVSAA---FKEDPLRVLRVARFAARFAHLNFRIADETLALMQTMTDSGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E L+ +P + + G +F ++ + + A + Sbjct: 171 QLTAERVWKETESALQTPSPQVFFQVLRDCGALAVLFPELDNLY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L MA + S +IR+ + + K L+ PE Sbjct: 225 EIDTGVHTLM---------TLEMAARLSPEIDIRFATLF----HDVGKALTPPEKWPSHP 271 Query: 319 LYGD------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKK 360 +G + +L++ AL + + HQ ++ + + W+K Sbjct: 272 GHGPAGVPLVAALCERLRVPNALRDLALLVTEFHDLVHTIQHQSPAQLVALFDRLDAWRK 331 Query: 361 P 361 P Sbjct: 332 P 332 >gi|330721489|gb|EGG99534.1| Poly(A) polymerase [gamma proteobacterium IMCC2047] Length = 435 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + + L K+ +VGG +RD L+ + +D DI+T P+ ++++F + R Sbjct: 25 NRHAMTAVQTLLDAGFKAYLVGGCIRDLLLGMKPKDFDISTNARPEDILKLFKRARI--- 81 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA-----------KVVFTRDWKADSLRR 120 + + + ++ +ITT R D + + D+LRR Sbjct: 82 -IGRRFRIVHVYFGREMLEITTFRGHHPEDDDHPHASRSENGQLLRDNIYGTASEDALRR 140 Query: 121 DFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT NALY D V+DY G D++NR ++ IGD R ED +R+LR RF G Sbjct: 141 DFTANALYYDIQDNTVLDYANGYEDIQNRILRIIGDPEKRYREDPVRMLRALRFAGKLG- 199 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +I++ + L + + R++ E K+ + + M + +F++++ Sbjct: 200 FDIEAKTAAPIHELGDLLSNIPAARLFDESLKVFLSGYGSKTLPLMIDYDLFRQLYPFTD 259 Query: 240 EI 241 E Sbjct: 260 EH 261 >gi|186477240|ref|YP_001858710.1| poly(A) polymerase [Burkholderia phymatum STM815] gi|184193699|gb|ACC71664.1| poly(A) polymerase [Burkholderia phymatum STM815] Length = 538 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 31/244 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P++V ++F + R Sbjct: 86 LISRNAIRVTEGLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPEQVQKLFRRARI- 144 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----GRY 104 + + + ++ + +T R+ D T GR Sbjct: 145 ---IGRRFQIVHVQFGQEIIETSTFRALMDAPPADSPPPRRLKRDELDRRTHAVDASGRV 201 Query: 105 AKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILED 163 + + D+ RRDFT+NA+Y D + V+DY G+ D+R R ++ IGD R ED Sbjct: 202 LRDNVWGEQHEDATRRDFTVNAMYYDPATQTVLDYHNGMADVRARLLRMIGDPATRYRED 261 Query: 164 YLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIV 223 +R+LR RF A G ID + + + + R++ E+ KLL + + L + Sbjct: 262 PVRMLRVVRFAAKLG-FEIDEATRAPITELADLINNVPAARLFDEMLKLLLSGHALACLQ 320 Query: 224 HMYN 227 + Sbjct: 321 RLRK 324 >gi|160874351|ref|YP_001553667.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS195] gi|189081878|sp|A9L5J0|CCA_SHEB9 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|160859873|gb|ABX48407.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS195] gi|315266586|gb|ADT93439.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS678] Length = 416 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 153/355 (43%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D + P++++++ + K P + K Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINA+ D++G + D G+ Sbjct: 54 NQQEYALARTERKIALGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + DA +ED LR+LR RF A + ++ L+ I A L Sbjct: 114 EDINARLLRHVSDA---FVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E++K L +P ++ G + +F ++ L V + E+ + Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIFA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L+ A + + +R+ + + K LS E + Sbjct: 225 EIDTGVHTLM---------VLAQAALLTEDKSVRFAAL----VHDLGKALSPKEHLPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K L + AL +T + ++SD F L + +VK Sbjct: 272 GHGQKG----LPLIKALCTRLRVPNETRDLALLVSDQHQNVHQAFELRAETIVKI 322 >gi|126173394|ref|YP_001049543.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS155] gi|166233876|sp|A3D1R1|CCA_SHEB5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|125996599|gb|ABN60674.1| metal dependent phosphohydrolase [Shewanella baltica OS155] Length = 416 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 153/355 (43%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D + P++++++ + K P + K Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINA+ D++G + D G+ Sbjct: 54 NQQEYALARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + DA +ED LR+LR RF A + ++ L+ I A L Sbjct: 114 EDINARLLRHVSDA---FVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E++K L +P ++ G + +F ++ L V + E+ + Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIFA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L+ A + + +R+ + + K LS E + Sbjct: 225 EIDTGVHTLM---------VLAQAALLTEDKSVRFAAL----VHDLGKALSPKEHLPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K L + AL +T + ++SD F L + +VK Sbjct: 272 GHGQKG----LPLIKALCTRLRVPNETRDLALLVSDQHQNVHQAFELRAETIVKI 322 >gi|59801178|ref|YP_207890.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae FA 1090] gi|293399045|ref|ZP_06643210.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Neisseria gonorrhoeae F62] gi|73619808|sp|Q5F8K9|CCA_NEIG1 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|59718073|gb|AAW89478.1| putative tRNA nucleotidyltransferase [Neisseria gonorrhoeae FA 1090] gi|291610459|gb|EFF39569.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Neisseria gonorrhoeae F62] Length = 410 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 123/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G + + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|239998987|ref|ZP_04718911.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae 35/02] gi|240080662|ref|ZP_04725205.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae FA19] gi|240118023|ref|ZP_04732085.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae PID1] gi|240123577|ref|ZP_04736533.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae PID332] gi|268594834|ref|ZP_06129001.1| multifunctional CCA protein [Neisseria gonorrhoeae 35/02] gi|268596785|ref|ZP_06130952.1| multifunctional CCA protein [Neisseria gonorrhoeae FA19] gi|268603735|ref|ZP_06137902.1| multifunctional CCA protein [Neisseria gonorrhoeae PID1] gi|268682206|ref|ZP_06149068.1| multifunctional CCA protein [Neisseria gonorrhoeae PID332] gi|268548223|gb|EEZ43641.1| multifunctional CCA protein [Neisseria gonorrhoeae 35/02] gi|268550573|gb|EEZ45592.1| multifunctional CCA protein [Neisseria gonorrhoeae FA19] gi|268587866|gb|EEZ52542.1| multifunctional CCA protein [Neisseria gonorrhoeae PID1] gi|268622490|gb|EEZ54890.1| multifunctional CCA protein [Neisseria gonorrhoeae PID332] gi|317164280|gb|ADV07821.1| multifunctional tRNA nucleotidyl transferase/2''''3''''-cyclic phosphodiesterase/2''''nucleotidase/phosphatase [Neisseria gonorrhoeae TCDC-NG08107] Length = 410 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 124/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G+ K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|148358518|ref|YP_001249725.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Corby] gi|296108394|ref|YP_003620095.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Legionella pneumophila 2300/99 Alcoy] gi|148280291|gb|ABQ54379.1| tRNA nucleotidyltransferase [Legionella pneumophila str. Corby] gi|295650296|gb|ADG26143.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Legionella pneumophila 2300/99 Alcoy] Length = 410 Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats. Identities = 76/410 (18%), Positives = 148/410 (36%), Gaps = 55/410 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ + VQ+ D + P+ +++ + + P + T + Sbjct: 2 KVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRRYRQVGRDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLIT----DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + G + + D RRD TINA+ D+QG +ID G Sbjct: 57 ---EYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDEQGNLIDPYQGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL + ++ + A ED +R+LR RF + + ++ L+ S+ + L Sbjct: 114 RDLEEKLLRHVSPA---FAEDPVRVLRVARFASRFHHLGFRVANETRLLMYSMVKQGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQL 246 L ER+W E K LE KNP I+ + + + I ++ + + Sbjct: 171 HLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSLFGVPNPYQYHQEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKS-------------------ILSMAKKFSL 287 ++ E + L+RF L+ K S I ++ + + Sbjct: 231 HSLMALRASSELSEEPLVRFAALVHDLGKASTPIQAWPKHHGHEEEGTKLIRALCTRLRI 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 P + R ++ + N + + L + ++F + ++C Sbjct: 291 PNDYRDLAVTVARAHLNIHRVCELRPNTVVKLLEQVDAFRRPQLFHKILIACQADAESCG 350 Query: 348 ILQVLSDIIHWKK---PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 V W + + + G GK + + + + Sbjct: 351 KTVVYRQTQLWNEILSECVKVKPQTFIVQGYE-GKAIKEAMHQSRVACVE 399 >gi|118602492|ref|YP_903707.1| poly(A) polymerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567431|gb|ABL02236.1| poly(A) polymerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 379 Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 K D D + +++++NK K+ +VGG VRD L+NL +D DIAT P++V ++F ++R Sbjct: 12 KKLLDKDALRVINVINKAGFKAYLVGGCVRDLLLNLKPKDFDIATNAKPEQVHKLFKRSR 71 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTR---DWKADSLRRDFT 123 + + ++ +K+ ++ T RS + + V+ + + D +RRDF Sbjct: 72 L----IGRRFRLVHVVFSARKFIEVATFRSGKVQTAKNGVVIRDNCYGNIEDDVVRRDFN 127 Query: 124 INALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INALY D + ++IDYVGGL D++ + + IG+ R +D +R++R RF E + Sbjct: 128 INALYYDIKTQEIIDYVGGLEDIKAKEMHIIGNPGIRFEQDPVRMIRAIRFQTKL-EFQL 186 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + A + L +S+ R++ E KL + + G+ K +F + Sbjct: 187 SYEIKSAIFEQASLLGNISTVRLYEECIKLFHNEYGFEVYERLEKYGLLKYLFKQTHKNE 246 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + + + ++++ + + + + + W+ KK Sbjct: 247 FIKKALLNTSDRIKKNQSVTPVFLFAVFLWRAYNERFIALKK 288 >gi|157110831|ref|XP_001651265.1| poly(a) polymerase [Aedes aegypti] gi|108883866|gb|EAT48091.1| poly(a) polymerase [Aedes aegypti] Length = 267 Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats. Identities = 96/263 (36%), Positives = 139/263 (52%), Gaps = 7/263 (2%) Query: 41 MNLSVQDIDIATTILPDRVMRIFSKTRYKVIP-TSISYGTIKIIC-RKKYFDITTLRSDL 98 M +DIDIATT P + IF+K +++ +GTI K+ F+ITTLR D Sbjct: 1 MGKCPKDIDIATTATPTEMKEIFNKENIRMVNMNGEKHGTITPRINDKENFEITTLRIDA 60 Query: 99 ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHH 158 +TDGR+A+V+ T DW D+ RRD TIN+++ GKV DY G DL+ R + F+GD Sbjct: 61 VTDGRHAEVIHTTDWLLDANRRDLTINSMFLGFDGKVYDYFYGYEDLQKRRVAFVGDPDL 120 Query: 159 RILEDYLRILRFFRFFAHY--GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 RI EDYLRILR+FRF+ + N D + L K GL +S ERIW E K+L Sbjct: 121 RIKEDYLRILRYFRFYGRIAENDDNHDEETLRIIAKNAAGLAKISGERIWQEWKKILTGN 180 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-EQVFEWKIDSLLRFIVLISWQDK 275 + + M N G+ + L + + D+ V + E V + +I + L+ + Sbjct: 181 FGCDLTIRMINCGLAPHMGLP-DQPNTDEFKAVFKRVEAVHKDEIQPITVLSALLLVPED 239 Query: 276 KSILSMAKKFS-LPREIRYFLIS 297 L++ KF+ RE+ YFL Sbjct: 240 AITLNLRLKFTVFERELSYFLTQ 262 >gi|15835306|ref|NP_297065.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] gi|270285478|ref|ZP_06194872.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] gi|270289489|ref|ZP_06195791.1| poly(A) polymerase family protein [Chlamydia muridarum Weiss] gi|301336875|ref|ZP_07225077.1| poly(A) polymerase family protein [Chlamydia muridarum MopnTet14] gi|7190722|gb|AAF39507.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg] Length = 425 Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats. Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 20/308 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K ++ IVGG +RD L+ +D D++T+ P+ V +F I Sbjct: 43 SPHALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDVSTSAKPEEVKALFKNC----I 98 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + I + +++T RS D K + D LRRDFTIN L+ D Sbjct: 99 LVGKRFRLAHIRFPNQIIEVSTFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYD 158 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 159 PSSEVIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEA 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 +++ L S R++ E+ K+L + I + +F + + LS+V Sbjct: 218 LRESRHELIKSSQPRVFEELIKVLSSGESTIFFQLASEYRILEILFPYMSKAF--GLSKV 275 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 ++ + F L + K S + L I F I FN + Sbjct: 276 LQDQT-----------FASLTALDAKVRQRSFCLERHLLLSILLFPIVNFNVRYKYSQHP 324 Query: 310 IPEIKKLF 317 I+ +F Sbjct: 325 TMSIQDIF 332 >gi|157960799|ref|YP_001500833.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella pealeana ATCC 700345] gi|189081879|sp|A8H161|CCA_SHEPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157845799|gb|ABV86298.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella pealeana ATCC 700345] Length = 412 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 85/404 (21%), Positives = 152/404 (37%), Gaps = 57/404 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D + P++++ + K P + T + Sbjct: 2 KIYLVGGAVRDKLLKLPVKDHDYMVVGATPEQMLSLGYNQVGKDFPVFLHPKTGQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y T + D LRRD TINA+ D G + D G+ Sbjct: 57 ---EYALARTERKTAAGYGGFSVDAAPTVTLEQDLLRRDLTINAIAQDDAGNLYDPYNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG--LVASIKAKKGLK 198 DL R ++ + DA +ED LR+LR RF A + + I + L+ ++ L+ Sbjct: 114 ADLEKRILRHVSDA---FVEDPLRVLRVARFAARFHGLKFTIAPETLSLMTTLSRSGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------LDQLSQVI 250 L++ER++ E++K L NP + G +F +++ + ++ I Sbjct: 171 ALTAERVYLELDKALSTDNPQVFFQVLKECGALAVLFPEIEALFGVPQPENWHPEIDTGI 230 Query: 251 EA----EQVFEWKIDSLLRFIVLISWQDKK-------------------SILSMAKKFSL 287 EQ + D+ +RF L+ K I S+ ++F + Sbjct: 231 HTMMVLEQAAKLSDDNSVRFAALVHDLGKALSPKEHLPKHHGHGQKGLPLIKSLCERFRV 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM-IAKLKIFLALHYNNLTHQDTC 346 P E R + + + N ++ L L+ ++ L + Sbjct: 291 PNEYRDLALLVCDQHQNIHKITELRADTLVKLFDKADFWRKPQRLEQLLIACEADSKGRK 350 Query: 347 FILQVLSDIIHWKKPLFPLTG----DDVVKYGIPPGKKVGNILV 386 + Q + K F ++ G G ++ L Sbjct: 351 GLEQTAYPQADYLKQCFAAASAVEVKSIIAQGYK-GAEIRTQLN 393 >gi|52426367|ref|YP_089504.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Mannheimia succiniciproducens MBEL55E] gi|73619797|sp|Q65Q41|CCA_MANSM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|52308419|gb|AAU38919.1| PcnB protein [Mannheimia succiniciproducens MBEL55E] Length = 419 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 36/303 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+NL V+D D + P++++ + + + P + T + Sbjct: 2 QTYLVGGAVRDQLLNLPVKDRDWVVVGATPEQLLSLGYQQVGRDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + G + D +RRD TINA+ D QGK ID G+ Sbjct: 57 ---EYALARTERKSGAGYTGFICDFSPHISLEQDLIRRDLTINAIAQDNQGKFIDPYEGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDG--LVASIKAKKGLK 198 +DL+NRT++ I A ED LR+LR RF A Y + +I + L+A I K L+ Sbjct: 114 SDLKNRTLRHISPA---FAEDPLRVLRVARFAARYHQLDFSIAPETIALMAEITEKGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L+ KNP + G K +F ++ + + + Sbjct: 171 QLTIERVWQETEKALKEKNPEIYFQVLLQVGALKILFPELYALY------GVPNPAQYHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-CNFNQKTLSIPEIKKLF 317 +IDS L ++ +L A + + E + F C+ K L+ +I Sbjct: 225 EIDSFLHTML---------VLQQAVRLTENTEFNKSAVRFAAICHDLGKALTPKDILPHH 275 Query: 318 YLY 320 Y + Sbjct: 276 YGH 278 >gi|310766309|gb|ADP11259.1| tRNA nucleotidyl transferase [Erwinia sp. Ejp617] Length = 407 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 146/361 (40%), Gaps = 57/361 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L++L ++D D + P +++ + + + P + Sbjct: 2 KTYLVGGAVRDELLDLPLKDKDWVVVGASPQQMLDLGYQQVGRDFPVFLHP--------D 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y V + D RRD T+NA+ D G D GG Sbjct: 54 SHEEYALARTERKSGQGYTGFVCYSAPDVTLEQDLARRDLTMNAIAQDTDGNYYDPYGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDL+ R ++ + ED LR+LR RF A + N ++ L+ ++ L+ Sbjct: 114 NDLQRRLLRHVSA---SFKEDPLRVLRVARFAARFAHLNFRIADETLALMQTMTDSGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E L+ +P + + G +F ++ + + A + Sbjct: 171 QLTAERVWKETESALQTPSPQVFFQVLRDCGALAVLFPELDNLY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L MA + S +IR+ + + K L+ PE Sbjct: 225 EIDTGVHTLM---------TLEMAARLSPEIDIRFATLF----HDVGKALTPPEKWPSHP 271 Query: 319 LYGD------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKK 360 +G + +L++ AL + + HQ ++ + + W+K Sbjct: 272 GHGPAGVPLVAALCERLRVPNALRDLALLVTEFHDLVHTIQHQSPAQLVALFDRLDAWRK 331 Query: 361 P 361 P Sbjct: 332 P 332 >gi|322417672|ref|YP_004196895.1| poly(A) polymerase [Geobacter sp. M18] gi|320124059|gb|ADW11619.1| poly(A) polymerase [Geobacter sp. M18] Length = 471 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 107/274 (39%), Gaps = 47/274 (17%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + +L L + + +VGG VRD L+ +D D+ T P ++ ++F R Sbjct: 21 LLSPNGVKVLYKLKEHGFVAYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKLFRNCRL- 79 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS-------------------------DLITDGRY 104 + + + ++ T RS + +GR Sbjct: 80 ---IGRRFRLAHLHFHDEIIEVATFRSTVDAAEAAAEEAPEAVPEPSEAELLEHEREGRR 136 Query: 105 A----------------KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRN 147 + + D++RRDFT+NAL+ +ID+VGG+ DL+N Sbjct: 137 RGHHGPKMLKSEDGMVLRDNVFGTPEEDAIRRDFTVNALFYSIADFSIIDHVGGMEDLKN 196 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWS 207 I+ IGD R ED +R++R RF + G NI+ A + + + R++ Sbjct: 197 GLIRTIGDPMVRFTEDPVRMIRAIRFASMLG-FNIEPRTEAAIEELCGTINKATPPRLYE 255 Query: 208 EINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 E+ KLL + + G+F+ +F Sbjct: 256 EVLKLLLMGAGERTYQMLRHSGLFEPLFPHFDAW 289 >gi|163751935|ref|ZP_02159147.1| putative tRNA nucleotidyltransferase [Shewanella benthica KT99] gi|161328151|gb|EDP99317.1| putative tRNA nucleotidyltransferase [Shewanella benthica KT99] Length = 413 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 152/346 (43%), Gaps = 40/346 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+ L V+D D + ++++ K P + T + Sbjct: 2 KIYLVGGAVRDSLLKLPVKDRDYLVVGATQEQMLAKGFHRVGKDFPVFLHPETQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D LRRD T+NA+ D GK+ D GG+ Sbjct: 57 ---EYALARTERKTGSGYGGFSCHASPDVTLEQDLLRRDLTVNAIAQDDDGKLYDPYGGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL N+ ++ + DA +ED LR+LR RF A + + ++ ++A+I L+ Sbjct: 114 DDLNNKLLRHVSDA---FIEDPLRVLRVARFAARFHAQGFTIADETLTMMANISQSGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER++ E++K L NP I + G K +F ++ L V + E+ + Sbjct: 171 ALTAERVFQELDKALSTDNPHIFIDVLEQCGALKILFPEIHA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L A K + +R+ + + K LS E + Sbjct: 225 EIDTGIHTLM---------VLEQAAKLTKDNTVRFAAL----VHDLGKALSPKEHLPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +G K + A +K A ++D ++ L IH L P Sbjct: 272 GHGQKGL-APIKALCARIKAPNEYRDLALLVSDLHQNIHNIDQLRP 316 >gi|78357015|ref|YP_388464.1| hypothetical protein Dde_1972 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219420|gb|ABB38769.1| CBS protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 898 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 87/409 (21%), Positives = 149/409 (36%), Gaps = 36/409 (8%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 VGG +RD L+ D+D+ R +K I + T +I + Sbjct: 490 VYAVGGFIRDLLLGRPNLDLDLVVEGDGITFARRLAKQLNGRIREHQKFKTAVVIFDDEN 549 Query: 89 -----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYV 139 D+ T R + V K D RRDFTINAL G+++D+ Sbjct: 550 GVESRIDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTINALAVQLNESSFGRLVDFF 609 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAKKGLK 198 G D++++ I+ + +ED RILR RF Y + L+ + ++ Sbjct: 610 GSQQDIKDKRIRVLH--SLSFVEDPTRILRAIRFEKRYNFAIGPQTSRLIKNALGLGLME 667 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS R++ E+ + E +PL M + + + V +S + + + E+V W Sbjct: 668 KLSGSRLFHELRLITEEASPLACFKRMEEFDLLRSVHP-VLALSYGKEQIIADVEKVLGW 726 Query: 259 K---------IDSLLRFIVLISWQDKKSILSMAKKFSLPREI-RYFLISFFNCNFNQKTL 308 + + L + + K+ LPR+ R F++ N L Sbjct: 727 HRLLYQDPAAEAWTVHLLALCHNAKYADVRDLLKRLYLPRKQSRDFMLLRENTREAAALL 786 Query: 309 SIPEIKKL----FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 S K Y + L +A + + L L DI Sbjct: 787 STWLKKDRSMSGLYNILHSLPPEGLLYIMARTRVDEIRKFVSHYLTKLRDI------RTD 840 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL---HHLLRK 410 ++G+D+ G PG G +L H ++ + +E L H +LR+ Sbjct: 841 ISGEDLQAMGGHPGPCFGKVLNHVLAAKLDGAAHSRKEQLELAHSMLRR 889 >gi|240117553|ref|ZP_04731615.1| PcnB [Neisseria gonorrhoeae PID1] gi|268603255|ref|ZP_06137422.1| poly(A) polymerase [Neisseria gonorrhoeae PID1] gi|268587386|gb|EEZ52062.1| poly(A) polymerase [Neisseria gonorrhoeae PID1] Length = 451 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 11/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IG+A R ED +RILR R G + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLG-FELSEQTAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDI-PDIHPLLNALRV 268 >gi|225174850|ref|ZP_03728847.1| CBS domain containing protein [Dethiobacter alkaliphilus AHT 1] gi|225169490|gb|EEG78287.1| CBS domain containing protein [Dethiobacter alkaliphilus AHT 1] Length = 873 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 84/419 (20%), Positives = 166/419 (39%), Gaps = 27/419 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L+ + +K K VGG +RD L+N+ D+D+ +K + + Sbjct: 461 LLLVAQKADKENVKVFAVGGFIRDLLLNIKNHDLDLVVEPAAIPFAEELNKMLGGRLTSH 520 Query: 75 ISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132 +GT I+ + + D+ T R + V K D RRDFTIN L Sbjct: 521 EKFGTASIVLPEGIHIDLVTSRQEFYARPAALPEVEQSSLKNDLFRRDFTINTLACSLNS 580 Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLV 188 GK+ID G+ DL I+ + + +ED LR+LR RF +G + ++ L+ Sbjct: 581 PGFGKLIDLFNGIGDLEKGLIRVLYN--LSFVEDPLRVLRAIRFEQRFGFRLEETTLSLM 638 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 + + L+ +S ER+ E+ L+ + ++ + I IF ++ +S + Sbjct: 639 ENAAQTRVLEKVSKERLHDELVLALQEEKAPEILIRYFTLNIAPMIFPGIR-LSDALQER 697 Query: 249 VIEAEQVFEWKIDSLLRFIVL---------ISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + A ++ W + V+ + + + ++ LP++ R +++ Sbjct: 698 LFAAREMCYWANRNWPDTEVVPGNLYLAALLLEAPFQEARHICRRLRLPQKQREPILAAV 757 Query: 300 NC--NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K L+ Y + L + A + + T + L I Sbjct: 758 EAVPRLKEKLLANALKPSELYRLFSGQPVETLLLLQADSKQSRIWESTALYWEKLRHIQ- 816 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++G D+ + G PG +L H + +N + +E+L + +K++A+ + Sbjct: 817 -----PHISGHDLRELGFKPGPGFQEVLSHIRAARLNGEVKNREEEL-AMAKKMLAARE 869 >gi|71908795|ref|YP_286382.1| Poly(A) polymerase, PcnB [Dechloromonas aromatica RCB] gi|71848416|gb|AAZ47912.1| Poly(A) polymerase, PcnB [Dechloromonas aromatica RCB] Length = 447 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 12/218 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 + L K+ +VGGAVRD L+ +D DIAT P+ V R F ++R Sbjct: 43 RVCETLQGHGFKAYVVGGAVRDLLIGAEPKDFDIATDATPEEVRRAFRRSRI----IGRR 98 Query: 77 YGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R + GR D+ RRDFT NALY D Sbjct: 99 FQIVHVMMGSETLEVTTFRGMLDEKTKTDEHGRVLHDNVFGSHADDAARRDFTANALYYD 158 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + VIDY G+ DL+ +T++ IG+ R ED +R+LR R A G ID + Sbjct: 159 PATEAVIDYHHGVGDLKQKTLRMIGEPRARYREDPVRMLRAVRLAAKLG-LMIDPEAKKP 217 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 + L+ + + R++ E+ KLL + + + I + + Sbjct: 218 IREMADLLENVPAARLFDEMLKLLTSGHSVKCITQLRD 255 >gi|322831346|ref|YP_004211373.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Rahnella sp. Y9602] gi|321166547|gb|ADW72246.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Rahnella sp. Y9602] Length = 411 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 74/346 (21%), Positives = 142/346 (41%), Gaps = 40/346 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRDSL+NL V + D + P+ ++ + K P + T Sbjct: 2 EIYLVGGAVRDSLLNLPVSEHDWVVVGATPEYMLENGYQQVGKDFPVFLHPVT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y + D +RRD TINA+ G++ D G Sbjct: 55 -HDEYALARTERKSGSGYNGFTCYAAPDVTLEQDLMRRDLTINAIAKSNDGELFDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + DA ED LR+LR RF A + + ++ L+ + L+ Sbjct: 114 RDIEQRLLRHVSDA---FGEDPLRVLRVARFAARFAHLDFTVAPETQALMQQMAESGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L+ ++P + + G K +F ++ + + A + Sbjct: 171 ALTPERVWKETEKALQTQDPQVYFQVLRDCGALKVLFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L +A + ++R+ + C+ K L+ P+ + Sbjct: 225 EIDTGIHTLM---------TLKIASTLTPDVDVRFSAL----CHDLGKALTPPQFWPAHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +G + ++ L +D ++ D+IH L P Sbjct: 272 GHGPAGVKLVEELCQRLKVPTHI-RDLAKLVAEFHDLIHTVNKLRP 316 >gi|86132790|ref|ZP_01051382.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Dokdonia donghaensis MED134] gi|85816744|gb|EAQ37930.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Dokdonia donghaensis MED134] Length = 471 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 81/456 (17%), Positives = 177/456 (38%), Gaps = 70/456 (15%) Query: 17 NILSLLNKGED----KSCIVGGAVRDSLMNL-SVQDIDIATTILPDRVMRIFSK--TRYK 69 I + +++ D ++ ++GG VRD ++ V+DID+ ++ R S+ Sbjct: 10 PIFNTISRAADDLQLETYVIGGFVRDYILKRGEVKDIDVVAVGSGIKLARKVSELLPNKP 69 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 + +YGT + + + R + + VV D RRDFTINAL Sbjct: 70 KVQVFKTYGTAMLRSNQIDVEFVGARKESYSKDSRNPVVEDGTLADDQNRRDFTINALAI 129 Query: 130 DQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 G +ID GG++DL + I+ D +D LR++R RF + I+ Sbjct: 130 RLNDEGYGDLIDPFGGISDLDRKIIRTPLDPDITYSDDPLRMMRAIRFATQL-DFMIERK 188 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI---- 241 + + + + +KI+++ERI E+NK++ + P + + G+ I ++ + Sbjct: 189 SVESITRNAERIKIITNERIVDELNKIMLSPVPSKGFLLLEKTGLLPYILPELVALKGID 248 Query: 242 ------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDK------------------- 275 D +E D+L LR+ L+ K Sbjct: 249 EIEGQKHKDNFYHTLEVVDNISRHTDNLWLRWAALLHDIGKAPTKKFSKKVGWTFHGHEF 308 Query: 276 ---KSILSMAKKFSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 K + + K+ +P + L+S ++ ++ +++L + GD + Sbjct: 309 VGSKMVYKLFKRLKMPLNDKMKFVQKMVLMSSRPIVISEDHVTDSAVRRLIFDAGDYI-- 366 Query: 327 AKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK- 372 + + L ++T ++ + + + H + P++G+++++ Sbjct: 367 ---EDLMTLCEADITTKNPKRFRRYHNNFKVVREKMKEVEERDHIRNFQPPVSGEEIMET 423 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + + P +++G + K+ + +E + Sbjct: 424 FNLKPCREIGTLKEAIKEAILEGEIPNEKEAAVAFM 459 >gi|309378616|emb|CBX22794.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 417 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 134/341 (39%), Gaps = 39/341 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFRPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + ++ L+ + L Sbjct: 114 QDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMKLMRKMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY- 320 S + ++ L A L RY + + K + P+I Y + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTQPDILPRHYGHD 271 Query: 321 --GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 G + + + A Y + C + + K Sbjct: 272 INGVEPVREVNQRLCAPKYCAELAELVCRWHIIFHQVGQLK 312 >gi|254493778|ref|ZP_05106949.1| multifunctional CCA protein [Neisseria gonorrhoeae 1291] gi|226512818|gb|EEH62163.1| multifunctional CCA protein [Neisseria gonorrhoeae 1291] Length = 410 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 124/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G+ K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|330974599|gb|EGH74665.1| poly(A) polymerase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 412 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 20/224 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 ++ +VGG VRD ++N++ +D D+AT+ P++V F R + + I ++ Sbjct: 1 QAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARI----IGRRFKLVHIHFGRE 56 Query: 88 YFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 ++ T R++ D GR + + D+ RRDFTINALY D Sbjct: 57 IIEVATFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTINALYYDPVS 116 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +V+DY G++D+RNR I+ IGD R ED +R+LR RF A + I+ Sbjct: 117 ERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-DFGIEKHSAQPIRA 175 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 L+ + S R++ E+ KL + + + + +F+ +F Sbjct: 176 LAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 219 >gi|86156707|ref|YP_463492.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans 2CP-C] gi|85773218|gb|ABC80055.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans 2CP-C] Length = 549 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 105/266 (39%), Gaps = 17/266 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + +++ L ++ +VGG VRD L+ + +D D+AT P V IF R Sbjct: 54 DGDALKVIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRL--- 110 Query: 72 PTSISYGTIKIICR-KKYFDITTLRS----------DLITDGRYAKVVFTRDWKADSLRR 120 + + R K ++ T R + D + + DS+RR Sbjct: 111 -IGRRFRLAHVYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITRDNVFGTAEEDSVRR 169 Query: 121 DFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+N L+ D G+VIDYVGG DL I IGD R+ ED +R LR RF A G Sbjct: 170 DFTVNGLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLG- 228 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I D A + L + R+ E KLL A + G I + Sbjct: 229 FTIAPDTFEAMRRTAGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPALG 288 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLR 265 A +D L+R Sbjct: 289 AALETWDDGRRRAFFAHLAALDRLVR 314 >gi|194098678|ref|YP_002001740.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae NCCP11945] gi|240125759|ref|ZP_04738645.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae SK-92-679] gi|268684357|ref|ZP_06151219.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-92-679] gi|226702073|sp|B4RLV5|CCA_NEIG2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|193933968|gb|ACF29792.1| putative tRNA nucleotidyltransferase [Neisseria gonorrhoeae NCCP11945] gi|268624641|gb|EEZ57041.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-92-679] Length = 410 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 123/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G + + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|221065686|ref|ZP_03541791.1| poly(A) polymerase [Comamonas testosteroni KF-1] gi|220710709|gb|EED66077.1| poly(A) polymerase [Comamonas testosteroni KF-1] Length = 521 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 72/337 (21%), Positives = 143/337 (42%), Gaps = 45/337 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D I+++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 39 PNLVDRRAIDVVQTLKRSGHEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFRRA- 97 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 98 ---FIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHA 154 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFTINA+Y D + ++ +DY GG+ D + + ++ IGD Sbjct: 155 VDASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDP 214 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A +++ ++ + L+ + R++ E+ KLL+ Sbjct: 215 ATRYREDPVRIIRAVRFAAKLSSKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQ 274 Query: 215 AKNPLNAIVHMYNGGIFKEIFL------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 + L ++ + G+ + I+ + + Q + + +V E K + + Sbjct: 275 TGHALASVAQLKELGLSRGIYPLLDVVMERADHPFVQAALMDTDRRVAEGKPVAPSFLLA 334 Query: 269 LISWQDKKS--ILSMAKKFSLPREIRYFLISFFNCNF 303 + WQD K +AK + ++ + F+ Sbjct: 335 CVLWQDVKQGWEKRLAKSYHPFPALQESIDEVFDQRI 371 >gi|282849854|ref|ZP_06259238.1| HD domain protein [Veillonella parvula ATCC 17745] gi|282580791|gb|EFB86190.1| HD domain protein [Veillonella parvula ATCC 17745] Length = 472 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 94/462 (20%), Positives = 168/462 (36%), Gaps = 66/462 (14%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 IL++L + ++ I+GGAVRD LM+ D DI T+ PD V+ + + Sbjct: 3 EQANRILTVLEEAGHEAYIIGGAVRDVLMHQKPHDFDIVTSARPDTVIEVLRGHDIQTTD 62 Query: 73 -TSISYGTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYA 129 S+G + K ++I T R++ R ++ + + D LRRDFT+N + Sbjct: 63 LVGKSFGVVVATLEGKQYEIATYRTERYGADSHRPEEITYADTLEEDVLRRDFTVNGMAM 122 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++ G+VID VGG D++++T++ IG+A R ED LR+ R RF A + D L A Sbjct: 123 NRYGEVIDLVGGRRDIKHKTLRTIGNAQKRFEEDALRLFRACRFVAKL-DFLPSKDLLEA 181 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIF 235 KA + LS ER+ +EIN+L+ + + + + I Sbjct: 182 MPKAFHRVPGLSLERVRNEINRLMLEPAVAKGLDVLVQSRLAECSCRVVENGVAREVPIL 241 Query: 236 LDV-------QEISLDQLSQVIEAEQVF-EWKIDSLLRFIVLISW--------------- 272 ++ QE + V + D +LR+ L+ Sbjct: 242 PELYHLVNLPQEKDFHEFDGWYHTLAVVSHTEPDLVLRWGALLHDVAKGMPAVRAVINGR 301 Query: 273 --------QDKKSILSMAKKFSLPREIRYFLISFFNCNF-----------NQKTLSIPEI 313 + ++ + P+ + + N+K E Sbjct: 302 LTDRGHDTLGAEMAETLLTRLGYPKAFVQRVAWIVKNHMRFHYFVQNGDANEKKWLRKEA 361 Query: 314 KKLFYLYGDKVMIAKL---KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + + + A K+ A + + + P+ D+ Sbjct: 362 RSGEFRDSQIMRTAWEQLAKVCAADVLGCGKPYSSTDGTLAFGECMADLSLEMPVHTKDL 421 Query: 371 --VKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + I GK+VG L + + N + L+ L Sbjct: 422 NYDERVIKIAGKQVGEGLQYLLGQVQNGVIPNKPDALYDALD 463 >gi|326794305|ref|YP_004312125.1| tRNA cytidylyltransferase [Marinomonas mediterranea MMB-1] gi|326545069|gb|ADZ90289.1| tRNA cytidylyltransferase [Marinomonas mediterranea MMB-1] Length = 371 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 150/383 (39%), Gaps = 39/383 (10%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 K +VGGAVRD+L+ L V D D + P+ ++ + K P + T + Sbjct: 2 GKKVYLVGGAVRDALLGLPVYDKDWVVVGSTPEEMVSEGYQAVGKQFPVFLHPKTKE--- 58 Query: 85 RKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVG 140 + R + + G + D RRD TINA+ D G++ D Sbjct: 59 -----EYALARKERKSGQGYTGFICDFAPDISLEEDLERRDLTINAIAKDNNGRLYDPFH 113 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKG 196 G D+ NR + + DA +ED LR+LR RF A + + ++ L+ I A Sbjct: 114 GTQDIENRVFRHVSDA---FVEDPLRVLRVARFAARFQDFEFRIANETLRLMKDISASGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L L+ ER+W E K L + L + IF V + Q + + Sbjct: 171 LTALTPERVWKETEKALGYPHFLTYFKILNQVDATTSIFP-VLTTHITQPQNLGKISS-- 227 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 + ++ S+ R+ +L S + + ++ +P E ++ + + N+ + + Sbjct: 228 DKELTSVERWALLCSGLEIHQLQALNANLKVPNEFKWLSETLCDFLKNKTLPLSGDNWE- 286 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS-DIIHWKKPL---FPLTGDDVVK 372 A L AL +Q T I V+ HW L ++ +++ Sbjct: 287 ----------AWLTQISALKKPERYYQLTYLISLVVDVHSKHWVSLLAQAQSISPKELMS 336 Query: 373 YGIPPGKKVGNILVHCKQEWINS 395 G G ++GN + K + I+S Sbjct: 337 QGYT-GAELGNAIKKAKADAIDS 358 >gi|296315340|ref|ZP_06865281.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768] gi|296837718|gb|EFH21656.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768] Length = 474 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGA+RD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----VG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGVETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + + +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDMPDDIHPLLNALRV 269 >gi|146292218|ref|YP_001182642.1| metal dependent phosphohydrolase [Shewanella putrefaciens CN-32] gi|145563908|gb|ABP74843.1| metal dependent phosphohydrolase [Shewanella putrefaciens CN-32] Length = 420 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 152/346 (43%), Gaps = 25/346 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D + P++++++ + K P + I ++ Sbjct: 10 KIYLVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPVFLHP-----ITQQ 64 Query: 87 KYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R L G + D LRRD TINA+ D++G + D G+ DL Sbjct: 65 EYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEEGNLHDPFNGIGDL 124 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILS 201 R ++ + DA +ED LR+LR RF A + G + DS L+ I L L+ Sbjct: 125 NARLLRHVSDA---FIEDPLRVLRVARFAARFHHLGFQIADSTLQLMQQIAQSGELNALT 181 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E++K L NP + G K +F + LD L + + E+ + +ID Sbjct: 182 PERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPE-----LDALFGIPQPEK-WHPEID 235 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKTLSIPEIKKLFYL 319 + L +++++ + + +L ++ + I + +P IK L Sbjct: 236 TGLHTLMVLAQAAILTQDKAVRFAALVHDLGKAITPIEHLPKHHGHGQKGLPIIKALCER 295 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362 L + ++ + N+ I+++ W+KP Sbjct: 296 LRIPNEFRDLALIVSDQHQNVHQAFKLRPETIIKIFDKADFWRKPE 341 >gi|294139661|ref|YP_003555639.1| tRNA nucleotidyltransferase [Shewanella violacea DSS12] gi|293326130|dbj|BAJ00861.1| tRNA nucleotidyltransferase [Shewanella violacea DSS12] Length = 413 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+ L ++D D + ++++ K P + T + Sbjct: 2 KIYLVGGAVRDSLLKLPIKDRDYMVVGATQEQMLAKGFHQVGKDFPVFLHPDTQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D LRRD TINA+ D G + D GG+ Sbjct: 57 ---EYALARTERKTGSGYGGFTCHASADVTLEQDLLRRDLTINAIAQDDDGNLYDPYGGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 NDL N+ ++ + DA +ED LR+LR RF A + G D ++A+I L+ Sbjct: 114 NDLNNKLLRHVSDA---FIEDPLRVLRVARFAARFHAQGFTIADETLTMMANISRSGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER++ E+NK L NP I + G K +F ++ L V + Q + Sbjct: 171 ALTAERVFLELNKALSTDNPQIFIHVLKQCGALKVLFPEIHA-----LFGVPQPAQ-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L A K + +R+ + + K LS E + Sbjct: 225 EIDTGIHTLM---------VLEQAAKLTKDNSVRFAAL----VHDLGKALSPKEDLPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K + A +K A ++D ++ L IH L P D ++K Sbjct: 272 GHGQKGL-APIKALCARIKVPNEYRDLALLVSDLHQNIHNIDQLRP---DTLIKM 322 >gi|120599846|ref|YP_964420.1| metal dependent phosphohydrolase [Shewanella sp. W3-18-1] gi|120559939|gb|ABM25866.1| metal dependent phosphohydrolase [Shewanella sp. W3-18-1] Length = 420 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 152/346 (43%), Gaps = 25/346 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D + P++++++ + K P + I ++ Sbjct: 10 KIYLVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPVFLHP-----ITQQ 64 Query: 87 KYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R L G + D LRRD TINA+ D++G + D G+ DL Sbjct: 65 EYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEEGNLHDPFNGIGDL 124 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILS 201 R ++ + DA +ED LR+LR RF A + G + DS L+ I L L+ Sbjct: 125 NARLLRHVSDA---FIEDPLRVLRVARFAARFHHLGFQIADSTLQLMQQIAQSGELNALT 181 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E++K L NP + G K +F + LD L + + E+ + +ID Sbjct: 182 PERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPE-----LDALFGIPQPEK-WHPEID 235 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKTLSIPEIKKLFYL 319 + L +++++ + + +L ++ + I + +P IK L Sbjct: 236 TGLHTLMVLAQAAILTQDKAVRFAALVHDLGKAITPIEHLPKHHGHGQKGLPIIKALCER 295 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362 L + ++ + N+ I+++ W+KP Sbjct: 296 LRIPNEFRDLALIVSDQHQNVHQAFKLRPETIIKIFDKADFWRKPE 341 >gi|262278360|ref|ZP_06056145.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus RUH2202] gi|262258711|gb|EEY77444.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus RUH2202] Length = 412 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 83/409 (20%), Positives = 159/409 (38%), Gaps = 62/409 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRDSL+ Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDSLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ G++ D GG Sbjct: 57 ---EYALARTERKSGKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGRIYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 DL N+T++ + +A ED LR+LR RF A Y +I S+ L+ ++ L Sbjct: 114 TDLENKTLRHVSEA---FAEDPLRVLRVARFAARYSSYGFHIASETLQLMQTMAESGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L + + + G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALLEDHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPVNELPRHIMHEERGVKPVTELCERLKV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLAL----HYNNL 340 P + R +S + +L + +L +++ F+ L Sbjct: 291 PTQTRQLALSVCKEHLKCHQIMSLKPGTVWRLLQRLDVLRRPERVEAFVQACECDARGRL 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 +D + ++ + + + D+ + G ++G +L+ C+ Sbjct: 351 GLEDRPY--PQAQYMLDAMQVVRSIKVQDLPEN--IKGAEIGEMLIQCR 395 >gi|153003178|ref|YP_001377503.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5] gi|152026751|gb|ABS24519.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5] Length = 548 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 102/240 (42%), Gaps = 16/240 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D+D + +++ L ++ VGG VRD L+ +D D+AT P V IF R Sbjct: 52 DADAVRVIARLRHMRHRAYFVGGCVRDLLLGAKPKDFDVATDAHPGEVRAIFRNCRL--- 108 Query: 72 PTSISYGTIKIICR-KKYFDITTLRSDLITDGR---------YAKVVFTRDWKADSLRRD 121 + + R K ++ T R + + G + + D++RRD Sbjct: 109 -IGRRFRLAHVYFRGGKVIEVATFRKNPVDVGEDVPDTDDLLITRDNVFGTAEEDAVRRD 167 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+N L+ D G+VIDYVGG DL R I IGD R+ ED +R+LR RF A G Sbjct: 168 FTVNGLFYDVATGEVIDYVGGREDLEARRIATIGDPEIRMREDPVRLLRAVRFAARLG-F 226 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 I D A + L + R+ EI K+L A + G I + Sbjct: 227 IIAPDTFEAMRRHASELARCAPARVLEEIFKILRCGGSARAFELLRASGALPVILPALAA 286 >gi|326423741|ref|NP_759609.3| tRNA nucleotidyltransferase [Vibrio vulnificus CMCP6] gi|27360199|gb|AAO09136.1| tRNA nucleotidyltransferase [Vibrio vulnificus CMCP6] Length = 436 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 82/403 (20%), Positives = 152/403 (37%), Gaps = 61/403 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + V D D + ++++ K P + T + Sbjct: 31 EVYLVGGAVRDKLLGIPVYDQDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKTKQ----- 85 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F+ D + D LRRD TINA+ D QG + D GG Sbjct: 86 ---EYALARTERKTGQGYKGFECFFSPDVALEEDLLRRDLTINAIAMDSQGVLYDPYGGQ 142 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + +A +ED LR+LR RF A ++ L+ SI A L Sbjct: 143 QDLQNRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELS 199 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L++ER+W E +K L P + + G + ++ + + Q + Sbjct: 200 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 259 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ AEQ + +++RF + K K I + ++ + Sbjct: 260 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKGVTPPSEWPSHKMHCHTGLKLIKQLCERVRV 319 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-------KVMIAKLKIFLALHYNNL 340 P E R + + N + + + + ++ + + L A H Sbjct: 320 PNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAERLNDILLCCQADHAGRQ 379 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 QD + + + + +++ G G + + Sbjct: 380 GLQDHPYPQAERIQLAYQAALSVEVQS--IIQDGFK-GPAIRD 419 >gi|15676739|ref|NP_273884.1| polyA polymerase [Neisseria meningitidis MC58] gi|7226078|gb|AAF41254.1| polyA polymerase [Neisseria meningitidis MC58] Length = 453 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ + IGDA R ED +RILR R G + + Sbjct: 157 PEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I L + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNALRV 269 >gi|194336308|ref|YP_002018102.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pelodictyon phaeoclathratiforme BU-1] gi|194308785|gb|ACF43485.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pelodictyon phaeoclathratiforme BU-1] Length = 479 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 88/463 (19%), Positives = 167/463 (36%), Gaps = 58/463 (12%) Query: 4 IVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 + L I + ++ +VGG VRD +M + DIDI T P + Sbjct: 2 TTDSQALLPEILYRIGDMADENGIGCYLVGGYVRDMIMQRACTDIDIMVTGDPLPFAKAV 61 Query: 64 S-KTRYKVIPTSISYGTIKI-----ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 K + + T ++ I ++ R + + V D Sbjct: 62 RDKLNGRNFILFERFRTAQLELSDPIQGSFKVELVGARKESYNNDSRKPVTLIGTLDDDL 121 Query: 118 LRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 RRDFTINAL ++ ++ID G+ D+ R +K D +D LR++R RF Sbjct: 122 SRRDFTINALALVLNSKERNQIIDRFNGVADIEARILKTPLDPLQTFSDDPLRMMRAARF 181 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 A + + D + A + ++I+S ER+ E K++ + P ++ +Y G+ +E Sbjct: 182 SAQL-DFRLLPDVVEAMKAMHERIRIVSIERVSQEFFKIMLSPRPSRGLIILYETGLLQE 240 Query: 234 IFLDVQEI-SLDQLSQVIEAEQVFE----------WKIDSLLRFIVLISWQDKKSILSMA 282 I +V + ++Q+ + + +F + LR L+ K + A Sbjct: 241 ILPEVASMAGIEQVDGLGHKDTLFHTFQVIDNVAAHSGNLWLRVAALLHDIAKPATKRFA 300 Query: 283 K----------------------KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 K + P + ++ + LS EI Sbjct: 301 KHVGWTFHGHDAIGPKIVAKIFRQMRWPLDPLDYVQKMVRLHHRPIPLSKEEITDSAIRR 360 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH-------------WKKPLFPLTG 367 L+ + L ++T ++ + +++S+ H K P++G Sbjct: 361 LMFDAGEDLQDLMHLCRADVTSKNPRKVSRIMSNFNHVEEKISEVGEKDQLAKWRPPISG 420 Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +D++ G+ GK VG I + I+ + +R Sbjct: 421 EDIMATLGLTEGKMVGMIKKRMENAVIDGLIAYDRNTALDYIR 463 >gi|325140009|gb|EGC62538.1| poly(A) polymerase [Neisseria meningitidis CU385] gi|325200477|gb|ADY95932.1| poly(A) polymerase [Neisseria meningitidis H44/76] Length = 445 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGAVRD L+ + +D D+AT P++V ++F ++R Sbjct: 33 AENVIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 88 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 89 RRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMRRDFTCNALYYD 148 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ + IGDA R ED +RILR R G + + Sbjct: 149 PEKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FELSEETAAP 207 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I L + + + Sbjct: 208 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNALRV 261 >gi|152999732|ref|YP_001365413.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS185] gi|166233877|sp|A6WKL1|CCA_SHEB8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|151364350|gb|ABS07350.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS185] Length = 416 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 153/355 (43%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D + P++++++ + K P + K Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINA+ D++G + D G+ Sbjct: 54 NQQEYALARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + DA +ED LR+LR RF A + ++ L+ I A L Sbjct: 114 EDINARLLRHVSDA---FVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E++K L +P ++ G + +F ++ L V + E+ + Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLHQCGALEVLFPEIFA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L+ A + + +R+ + + K LS E + Sbjct: 225 EIDTGVHTLM---------VLAQAALLTEDKSVRFAAL----VHDLGKALSPKEHLPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K L + AL +T + ++SD F L + +VK Sbjct: 272 GHGQKG----LPLIKALCTRLRVPNETRDLALLVSDQHQNVHQAFELRAETIVKI 322 >gi|312381951|gb|EFR27559.1| hypothetical protein AND_05670 [Anopheles darlingi] Length = 350 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 96/312 (30%), Positives = 147/312 (47%), Gaps = 20/312 (6%) Query: 5 VQHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMR 61 + FH +L ++++L + + I GGA D+DIATT P ++ Sbjct: 50 IDSPEFHSIFTQELKDLIALFKRYNYEIRIAGGA-----------DVDIATTATPTQMKD 98 Query: 62 IFSKTRYKVIP-TSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLR 119 IF+ +++ +GTI K F+ITTLR D++TDGR+A+VV T DW D+ R Sbjct: 99 IFTTENIRMVNMNGEKHGTITPRINDKECFEITTLRLDVVTDGRHAEVVHTTDWLLDANR 158 Query: 120 RDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 RD TIN+++ G + DY G DL+ R + F+GD RI EDYLRILR+FRF+ E Sbjct: 159 RDLTINSMFLGFDGTLYDYFYGYEDLQKRRVAFVGDPDTRIKEDYLRILRYFRFYGRIAE 218 Query: 180 KN--IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 D++ L GL +S ERIW E K+L M + L Sbjct: 219 CANRHDAETLRIITNNATGLAKISGERIWQEWKKILTGNFGTELTTEMIKCNLAVHCGLP 278 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS-LPREIRYFLI 296 + ++D+ V E + F K++ + L+ Q+ L+ + + RE+ YF+ Sbjct: 279 -ESPNVDEFIHVSENVRAFSGKLEPMTLVAALLHTQEDAIKLNSRLRLTVFERELIYFIT 337 Query: 297 SFFNCNFNQKTL 308 L Sbjct: 338 QNREEAATIDEL 349 >gi|325289973|ref|YP_004266154.1| CBS domain containing protein [Syntrophobotulus glycolicus DSM 8271] gi|324965374|gb|ADY56153.1| CBS domain containing protein [Syntrophobotulus glycolicus DSM 8271] Length = 854 Score = 228 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 89/414 (21%), Positives = 167/414 (40%), Gaps = 37/414 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L I + ++ +VGG VRD + S QD+D+ + F+ +V+ Sbjct: 462 LDKIKETADHLGIQAYLVGGFVRDLFLRKSSQDLDVVVEGDSNS----FANQLIEVVEVH 517 Query: 75 I-----SYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 +GT+KI R + DI R + + + K D RRDFT+NA+ Sbjct: 518 KVVQHHQFGTVKITFRDGTHLDIAGSRWEEYDFPGALPTIEESNLKEDLFRRDFTVNAMA 577 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 A++ G+V+D+ GGL DL+ I+F+ + +ED R++R RF Y K I Sbjct: 578 LCLNANRFGEVVDFYGGLRDLQQGEIRFLHN--LSFIEDPTRMIRAVRFACRYHFK-IAK 634 Query: 185 DGLVAS--IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 A L +S ER E+ +L + + + G+ K F + Sbjct: 635 VTREAINTALQANVLLKISKERFTEELMLILPEQAYQKMVRELAAFGLMKNWFGREFAWN 694 Query: 243 LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 L + E+V +W ++ +++ L+ + I ++ + + + + + + Sbjct: 695 LAE-----SEEEVKDWDLEK--KWLGLLISLENDEIRAVLDRLAFTKSMLKHTLDYVAVR 747 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + L+G K I L H+D +++ + Sbjct: 748 SKLRAAGDCPQEGYAALFGVKEGIVDLL---------KKHEDLRPLIESYQQALQ--NLK 796 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 + G D++ GIP G ++G IL W+ +E+ ++LL+ L +S+ Sbjct: 797 MTIRGSDLLAAGIPEGPEIGRILQDIHLAWLTGKISDFEEERNYLLQILKRNSE 850 >gi|89901286|ref|YP_523757.1| poly(A) polymerase [Rhodoferax ferrireducens T118] gi|89346023|gb|ABD70226.1| poly(A) polymerase [Rhodoferax ferrireducens T118] Length = 535 Score = 228 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 145/337 (43%), Gaps = 45/337 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D +N++ L ++ +VGGAVRD ++ L+ +D D+AT P++V +F + Sbjct: 37 PKLVDERALNVVRTLKNAGFEAYVVGGAVRDLMVGLAPKDFDVATNATPEQVKGLFRRA- 95 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 96 ---FIIGRRFRIVHVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNEKTSKSELAGMKHA 152 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + + GR + + D++RRDFTINA+Y D + ++ +DY G+ D ++R I+ IGD Sbjct: 153 VDSSGRVLRDNVWGPQEEDAVRRDFTINAMYYDPETQIVVDYHHGIKDSKDRVIRMIGDP 212 Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A +++ IK+++ L + R++ E+ KLL+ Sbjct: 213 ATRYREDPVRIIRAVRFAAKLSGLGFKLEAKTAAPLIKSQELLAEVPQSRLFDEMLKLLQ 272 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA------EQVFEWKIDSLLRFIV 268 + L +I + G+ + I+ + + ++A +V E K + Sbjct: 273 TGHALASIEQLKALGMARGIYPLLDVVVQRAEQAFVKAALRDTDRRVSEGKPVVASFLLA 332 Query: 269 LISWQDKKS--ILSMAKKFSLPREIRYFLISFFNCNF 303 + W D + + ++ ++ + FN + Sbjct: 333 CVLWADVRDGWAKRINERQHAHPALQDAIEDVFNSHI 369 >gi|238755491|ref|ZP_04616831.1| Phosphatase [Yersinia ruckeri ATCC 29473] gi|238706332|gb|EEP98709.1| Phosphatase [Yersinia ruckeri ATCC 29473] Length = 415 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 34/341 (9%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+NL V + D + P++++ + K P + + R++Y Sbjct: 4 YLVGGAVRDNLLNLPVTERDWVVVGATPEQLLSQGYQQVGKDFPVFLHP-----VSREEY 58 Query: 89 FDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R S G + D LRRD TINA+ G++ D G DL N Sbjct: 59 ALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQHSDGELFDPYHGQQDLEN 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A + ++ L+ + L L+ E Sbjct: 119 RILRHVSAA---FAEDPLRVLRVARFAARFANLGFTIAPETQALMRQMADNGELSALTPE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E K L +++P + + G +F ++ + + A + + +ID+ Sbjct: 176 RVWKETEKALLSQSPQTYFQVLRDCGALAVLFPEIDALF------GVPAPEKWHPEIDTG 229 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 + ++ L++A + S IR+ + C+ K L+ E + +G Sbjct: 230 IHTLM---------TLTIAAQLSSEVAIRFAAL----CHDLGKGLTPKEFWPRHHGHGPA 276 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + ++ L N +D ++ D+IH L P Sbjct: 277 GIKLVERLCQRLRVPN-PVRDLAKLVAEYHDLIHTIDRLRP 316 >gi|295675599|ref|YP_003604123.1| poly(A) polymerase [Burkholderia sp. CCGE1002] gi|295435442|gb|ADG14612.1| poly(A) polymerase [Burkholderia sp. CCGE1002] Length = 531 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 31/246 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 79 PTLISRNAIRVTEGLQQAGFRAFIVGGAVRDLLLGVKPKDFDVATDATPEQVQKLFRRAR 138 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ + +T R+ D T G Sbjct: 139 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPKRLKRDELDRRTHAVDASG 194 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 195 RVLRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRTRLLRMIGDPATRYR 254 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A + +ID K + + + R++ E+ KL+ + + L Sbjct: 255 EDPVRMLRVVRFAAKL-DFDIDDATRAPIEKMADLINNVPAARLFDEMLKLMLSGHALAC 313 Query: 222 IVHMYN 227 + + Sbjct: 314 LKRLRQ 319 >gi|297620654|ref|YP_003708791.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044] gi|297375955|gb|ADI37785.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044] Length = 413 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 77/276 (27%), Positives = 125/276 (45%), Gaps = 15/276 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 DSD + ++ LN+ + +VGG+VRD L+ +D DI+T+ P + +IF + Sbjct: 19 DSDALYVIRKLNEAGYTAYLVGGSVRDLLVKREPKDFDISTSAHPQEIKKIFRRN---CF 75 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ 131 + I KK +++T RS + + D +RRDFTIN L+ D Sbjct: 76 LIGKRFRLAHIKFGKKIIEVSTFRSGENASDLIVRDNTWGTEEEDVIRRDFTINGLFYDP 135 Query: 132 -QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + KVIDYVGG D+ + ++ IGD R +D +R+LR +F A +G NID A Sbjct: 136 FEHKVIDYVGGWEDIHQKVLRSIGDPIIRFKQDPVRMLRLIKFRARFG-FNIDEQTKQAL 194 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----------QE 240 I +K + S RI E+ ++LE+ M + +F + Q Sbjct: 195 IATRKEITKSSPARILEEMLRMLESGAAAQFFHLMTQAKMLHLLFPMLTTILETEKGKQI 254 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276 L Q++ I +Q +L +L D++ Sbjct: 255 YDLLQVADQIHRQQAESLLSRPILTACLLFPIVDQE 290 >gi|329119544|ref|ZP_08248228.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200] gi|327464331|gb|EGF10632.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200] Length = 467 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 10/232 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +S L + ++ +VGGAVRD L+ +D D+AT P+ V +F ++R Sbjct: 56 AEKTVSRLQQAGYEAYVVGGAVRDLLIGAQPKDFDVATDATPEEVRALFRRSRI----IG 111 Query: 75 ISYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + + + ++TT R + GR K D+ RRDFT NALY D Sbjct: 112 RRFRIVHVQVGPETIEVTTFRGNGGAVQNEQGRIMKDNTYGTLAEDAGRRDFTCNALYFD 171 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + ++ D+ G+ D+R R I IG+ R ED +RILR R G I+ Sbjct: 172 PVKREIHDFHHGVQDVRQRRIVMIGNPAERYQEDPVRILRAIRLAGKLG-FTIEERTAAP 230 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + LK R++ EI KLL + + + + GI I + + Sbjct: 231 AADYAGRLKEEPPARLFDEITKLLFSGHAGRCLGQIRALGIAARIHPLLDAL 282 >gi|240128281|ref|ZP_04740942.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae SK-93-1035] gi|268686678|ref|ZP_06153540.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-93-1035] gi|268626962|gb|EEZ59362.1| multifunctional CCA protein [Neisseria gonorrhoeae SK-93-1035] Length = 410 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 123/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G + + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGALQVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|149917655|ref|ZP_01906151.1| poly(A) polymerase [Plesiocystis pacifica SIR-1] gi|149821437|gb|EDM80837.1| poly(A) polymerase [Plesiocystis pacifica SIR-1] Length = 486 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 26/283 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + ++ L ++ +VGG VRD +N +D D+AT+ P+++ R+F +R Sbjct: 37 DKDALKVVRKLLAANHEAYLVGGCVRDLYLNRKPKDFDVATSARPEQIRRVFRNSRI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGRYA-------------------KVVFTRD 112 + + K + +T R++ + A D Sbjct: 94 -IGRRFKLAHVFFGSKIIETSTFRTNPKEEEHAATSEGDAAAEGGGGGDLLITHDNSWGD 152 Query: 113 WKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 K D+ RRDFTIN L+ D + + ++D+V G+ DL I+ IG+ R ED +R++R Sbjct: 153 IKDDARRRDFTINGLFYDIERRAIVDFVDGVRDLDRGIIRTIGEPEVRFREDPVRMIRAI 212 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 +F A + ++ D A ++ + S R+ E+ KLL + A M +F Sbjct: 213 KFAARL-DFTVEMDSWQALLRCAPDIARCSRARLVEELYKLLRGGSSRRAFELMIQAELF 271 Query: 232 KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQD 274 + I+ D + D + + + S L + L + D Sbjct: 272 QHIWPDYIALY-DASGGLHRPSRKDPPDLPSALFWRYLAALDD 313 >gi|320354996|ref|YP_004196335.1| polunucleotide adenylyltransferase region [Desulfobulbus propionicus DSM 2032] gi|320123498|gb|ADW19044.1| Polynucleotide adenylyltransferase region [Desulfobulbus propionicus DSM 2032] Length = 901 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 82/403 (20%), Positives = 159/403 (39%), Gaps = 32/403 (7%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 + + GG VRD L+++ DIDI R + ++ R+ V+ +GT +I + Sbjct: 499 AYVAGGFVRDLLLHVRNTDIDIVIEGDGIRFAKTLAEQRHGVVHPHEKFGTATVIFPDQS 558 Query: 89 -FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLN 143 D+ T R + V K D RRDFTINA+ G ++DY N Sbjct: 559 RVDVATARLEYYEHPAALPTVEHSSIKLDLYRRDFTINAMAIHLNPERFGTLVDYFNCQN 618 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILSS 202 DL+ R I+ + + +ED RI R RF ++ L+ + + + Sbjct: 619 DLKERRIQVLHN--LSFVEDPTRIFRAIRFEGRLDFTITRHAEKLIKNTVQMNLFEKVEE 676 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-QEISLDQ--LSQVIEAEQVFEWK 259 R + E+ +L +P+ A+ M +F ++ D+ + +D+ L + +A Q W Sbjct: 677 PRFFHELKLILSEDDPIPALRRMAQFKLFPFLWPDLRPNLKVDRRFLHTLTQANQAISWF 736 Query: 260 -----IDS----LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS----FFNCNFNQK 306 D ++ + ++S K ++S +F LP + R LI + Sbjct: 737 KLLYLPDRVETWMVYLLAIMSRSRTKELISFCHRFDLPPKQRKKLIQQKTDAERIAQEMQ 796 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + ++L G+ + L + + + ++ + +K + + Sbjct: 797 KRPFLKPSETYWLLGELDIEGLLYLMTIARKRYIQQAVSLYVTTL-------RKVVPLVG 849 Query: 367 GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 GD++ G PG + I H + ++ S + +R Sbjct: 850 GDELKTMGYIPGPQFRAIHNHLIEMQLDGEIT-SHDQALAFIR 891 >gi|319425518|gb|ADV53592.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella putrefaciens 200] Length = 412 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 152/346 (43%), Gaps = 25/346 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D + P++++++ + K P + I ++ Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYMVVGATPEQMLQLGYRQVGKDFPVFLHP-----ITQQ 56 Query: 87 KYFDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R L G + D LRRD TINA+ D++G + D G+ DL Sbjct: 57 EYALARTERKVGLGYGGFSCYASPDVTLEQDLLRRDLTINAIAQDEEGNLHDPFNGIGDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILS 201 R ++ + DA +ED LR+LR RF A + G + DS L+ I L L+ Sbjct: 117 NARLLRHVSDA---FIEDPLRVLRVARFAARFHHIGFQIADSTLQLMQQIAQSGELNALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E++K L NP + G K +F + LD L + + E+ + +ID Sbjct: 174 PERVWQEVDKTLSGSNPEVFFEVLRQCGALKVLFPE-----LDALFGIPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKTLSIPEIKKLFYL 319 + L +++++ + + +L ++ + I + +P IK L Sbjct: 228 TGLHTLMVLAQAAILTQDKAVRFAALVHDLGKAVTPIEHLPKHHGHGQKGLPIIKALCER 287 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362 L + ++ + N+ I+++ W+KP Sbjct: 288 LRIPNEFRDLALIVSDQHQNVHQAFKLRPETIIKIFDKADFWRKPE 333 >gi|194334118|ref|YP_002015978.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Prosthecochloris aestuarii DSM 271] gi|194311936|gb|ACF46331.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Prosthecochloris aestuarii DSM 271] Length = 489 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 83/468 (17%), Positives = 170/468 (36%), Gaps = 63/468 (13%) Query: 5 VQHKWFHDSDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 ++ + HDS L +L + ++ + +VGG +RD L+ QDIDI P Sbjct: 8 LKEQRLHDS-LPEVLYRIGDIADQQNIECYLVGGYIRDVLLERPSQDIDIMIIGDPIAFA 66 Query: 61 RIFSKT-RYKVIPTSISYGTIKI-----ICRKKYFDITTLRSDLITDGRYAKVVFTRDWK 114 R K + + + T ++ + +I R + + + Sbjct: 67 REVQKQLKGRNFVVFERFRTARLELDDAVEGPVLLEIVGARKESYNPDSRKPITEIGSLE 126 Query: 115 ADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRF 170 D RRDFT+NAL + +++D GG+ L + +K + +D LR++R Sbjct: 127 DDLSRRDFTVNALALELNALNRNRIVDLYGGIEALHSGILKTPLEPEKTFSDDPLRMMRA 186 Query: 171 FRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF + E ++ + L A + I+S ER+ E K++++ P + ++ G+ Sbjct: 187 ARFSSQL-EFSLTDETLDAIKAMHTRISIVSRERVSHEFLKIMQSPKPSIGLKILFETGL 245 Query: 231 FKEIFLDVQEI-SLDQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSIL 279 KEIF ++ + ++Q+ + + + LR L+ K Sbjct: 246 LKEIFPELTAMAGIEQVDGLGHKDTLLHTFQVVDKLAEKSDHLWLRVAALLHDIAKPLTK 305 Query: 280 SMAKK----------------------FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 ++ P E ++ + LS EI Sbjct: 306 RFSRHTGWTFHGHEVVGTRLAAKIFRSMRWPLEPLEYVQKMIRLHHRPIPLSKEEISDSA 365 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL-------------SDIIHWKKPLFP 364 +L + L ++T ++ + Q++ ++ K P Sbjct: 366 VRRLMFEAGEELNDLMTLCRADVTSKNPRKVRQIMQNFNRVEEKIDEVAEKDLLAKWRPP 425 Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + G ++++ G+ G+ VG I + I+ ++ +RK+ Sbjct: 426 VNGIEIMEILGLNEGRMVGVIKKKMESAIIDGEIPYDRDAALAYIRKV 473 >gi|304409317|ref|ZP_07390937.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS183] gi|307303675|ref|ZP_07583428.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica BA175] gi|304351835|gb|EFM16233.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica OS183] gi|306912573|gb|EFN42996.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella baltica BA175] Length = 416 Score = 228 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 152/355 (42%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+NL ++D D + P++++++ + K P + K Sbjct: 2 KIYLVGGAVRDSLLNLPIKDKDYLVVGATPEQMLQLGYRQVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G + D LRRD TINA+ D++G + D G+ Sbjct: 54 NQQEYALARTERKIGLGYGGFSCHASPDVTLEQDLLRRDLTINAIAQDEKGNLYDPFNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + DA +ED LR+LR RF A + ++ L+ I A L Sbjct: 114 EDINARLLRHVSDA---FVEDPLRVLRVARFAARFHALGFHIAAETLALMRQISASDELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E++K L +P + G + +F ++ L V + E+ + Sbjct: 171 ALTAERVWQEVDKSLGGPHPEVFFEVLNQCGALEVLFPEIFA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L+ A + + +R+ + + K LS E + Sbjct: 225 EIDTGVHTLM---------VLAQAALLTEDKSVRFAAL----VHDLGKALSPKEHLPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K L + AL +T + ++SD F L + +VK Sbjct: 272 GHGQKG----LPLIKALCTRLRVPNETRDLALLVSDQHQNVHQAFELRAETIVKI 322 >gi|86133852|ref|ZP_01052434.1| multifunctional CCA protein [Polaribacter sp. MED152] gi|85820715|gb|EAQ41862.1| multifunctional CCA protein [Polaribacter sp. MED152] Length = 487 Score = 228 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 78/446 (17%), Positives = 166/446 (37%), Gaps = 69/446 (15%) Query: 18 ILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPD----RVMRIFSKTRYKVIP 72 I E + ++GG VRD ++ + +DIDI +V ++ + Sbjct: 32 ISQAAKNLEIDAYVIGGYVRDFFLDRGTAKDIDIVAVGSGIDLALQVSKLLPNK--PKVQ 89 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 +YGT + + + R + T+ V + D RRDFTINAL Sbjct: 90 VFKTYGTAMLRYKDIEIEFVGARKESYTENSRNPQVSSGTLVDDQNRRDFTINALALSLN 149 Query: 133 ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 G ++D G+ DL ++ I+ + +D LR++R RF I++ L Sbjct: 150 DANFGDILDPFNGMKDLEDKIIRTPLNPDITYSDDPLRMMRAIRFATQLN-FEIEASSLA 208 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A K LKI++ ERI E+NK+L AK P + + + +I ++ + + + Sbjct: 209 AISKNAHRLKIITKERIVVELNKILAAKKPSIGFLLLEKTKLLPQILPELIALKGVEEVE 268 Query: 249 VIEAEQVFEWKI-----------DSLLRFIVLISWQDK---------------------- 275 + + F + D LR+ L+ K Sbjct: 269 GQKHKDNFYHTLEVVDNISKNTEDVWLRWAALLHDIGKAPTKRFSKKVGWTFHGHEFVGS 328 Query: 276 KSILSMAKKFSLP-----REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330 K + + K+ +P + ++ ++ ++ +++L + G+++ Sbjct: 329 KMVYKIFKRLKMPLNAKMKFVQKMVLLSSRPIVLASDVTDSAVRRLVFDAGEEIND---- 384 Query: 331 IFLALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVV-KYGIP 376 + L ++T ++ + + + + P+TG++++ + + Sbjct: 385 -LMTLCEADITTKNPRKFKKYHKNFELVRKKIKEVEERDRIRNFQPPITGEEIMTAFNLK 443 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQE 402 P +++G I K+ + + Sbjct: 444 PCREIGQIKEAIKEAILEGEIPNEHQ 469 >gi|239814474|ref|YP_002943384.1| poly(A) polymerase [Variovorax paradoxus S110] gi|239801051|gb|ACS18118.1| poly(A) polymerase [Variovorax paradoxus S110] Length = 546 Score = 228 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 133/310 (42%), Gaps = 45/310 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D N+++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F + Sbjct: 38 PALVDERARNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRA- 96 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 97 ---FIIGRRFRIVHVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNERTSKGELASMKHA 153 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 + GR + + D+ RRDFT+NA+Y D + V+DY G+ D + T++ IGD Sbjct: 154 VDASGRVLRDNVWGPQEEDAARRDFTVNAMYYDPANQVVVDYHNGIRDAQKLTLRMIGDP 213 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A +++ +++ K L + R++ E+ KLL+ Sbjct: 214 ATRYREDPVRIIRAIRFSAKLAALGFKMEAKTAAPLVESSKLLADVPQSRLFDEMLKLLQ 273 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI-------EAEQVFEWKIDSLLRFI 267 + + + + G+ K I+ + ++ +++ Q +V E K + + Sbjct: 274 TGHAIATVEQLRKLGLAKGIYP-LLDVVVERADQPFVKAALQDTDRRVGEGKPVAPSFLL 332 Query: 268 VLISWQDKKS 277 + W D + Sbjct: 333 ACVLWADVRD 342 >gi|295134943|ref|YP_003585619.1| tRNA nucleotidyltransferase [Zunongwangia profunda SM-A87] gi|294982958|gb|ADF53423.1| tRNA nucleotidyltransferase [Zunongwangia profunda SM-A87] Length = 483 Score = 228 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 89/459 (19%), Positives = 169/459 (36%), Gaps = 66/459 (14%) Query: 13 SDLIN--ILSLLNKGEDK----SCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSK 65 S+ +N I ++ K ++ S ++GG VRD ++ +DIDI + S+ Sbjct: 12 SEALNHQIFKVIAKATEELQLDSYVIGGFVRDFILQRGNAKDIDIVAVGSGIDLALKVSQ 71 Query: 66 --TRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + +YGT + + R + + VV + D RRDFT Sbjct: 72 LLPHKPKVQVFKNYGTAMLRAFDMDIEFVGARKESYAEDSRNPVVENGTLEDDQNRRDFT 131 Query: 124 INALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 INAL G ++D GGL DL+++ I+ + +D LR+LR RF + Sbjct: 132 INALALSLNTSNYGDLLDPFGGLADLKSQLIRTPLEPGVTYSDDPLRMLRAIRFASQLN- 190 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 I+ L A + K +KI+S ERI E++K+L + P ++ + K I ++ Sbjct: 191 FVIEKKSLDAIKEHHKRIKIISKERITEELHKILLSNRPSKGFALLHKTKLLKIILPELT 250 Query: 240 EI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLISWQDK------------- 275 + D +E D+L LR+ L+ K Sbjct: 251 ALEGIDEIEGQRHKDNFWHTLEVVDNISQNTDNLWLRWAALLHDIGKAPTKKFHKKIGWT 310 Query: 276 ---------KSILSMAKKFSLPREIRYFLISF------FNCNFNQKTLSIPEIKKLFYLY 320 K + + K+ +P + L+ ++ +++L + Sbjct: 311 FHGHEFVGSKMVFKLFKRLKMPLNDKMKLVQKMVLMSSRPIAVVDDDVTDSAVRRLIFDA 370 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFI----------LQVLSDIIHWKKPLFPLTGDDV 370 G+ I L I + ++ + + H + P++G+++ Sbjct: 371 GEN--IDDLMILCEADITTKNPRRYKKYHNNFKIVRQKMKEVEERDHVRNFQPPVSGEEI 428 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++ + I P ++VG I K+ + L+ Sbjct: 429 METFNIKPCREVGIIKDAIKEAILEGDIPNEHAAARELM 467 >gi|313668356|ref|YP_004048640.1| tRNA nucleotidyltransferase [Neisseria lactamica ST-640] gi|313005818|emb|CBN87272.1| putative tRNA nucleotidyltransferase [Neisseria lactamica 020-06] Length = 417 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 39/341 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFRPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++++ A ED +RILR RF A YG + + L+ + L Sbjct: 114 QDLAAGILRYVSPA---FAEDPVRILRTARFAARYGFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY- 320 S + ++ L A L RY + + K + P+I Y + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHYGHD 271 Query: 321 --GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 G + + + A Y + C + + K Sbjct: 272 INGVEPVREVNRRLRAPKYCAELAELVCRWHIIFHQVGQLK 312 >gi|89890534|ref|ZP_01202044.1| polyA polymerase [Flavobacteria bacterium BBFL7] gi|89517449|gb|EAS20106.1| polyA polymerase [Flavobacteria bacterium BBFL7] Length = 477 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 76/470 (16%), Positives = 168/470 (35%), Gaps = 70/470 (14%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDR- 58 M + I ++ ++GG VRD + + DIDI Sbjct: 1 MEQLQFKDAISHPVFKTISDAAAAIGVEAYVIGGFVRDYFLKRGAKQDIDIVAVGSGIEL 60 Query: 59 ---VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 V + ++ + +YGT + + R + T +V + Sbjct: 61 AQKVAALLPQS--TKVSVFKTYGTAMVKTDDFELEFVGARKESYTRDSRNPIVEDGTLED 118 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINA+ G+++D G+ DL + IK + + +D LR++R Sbjct: 119 DQNRRDFTINAMAFSLSSQNYGQLVDPFNGMVDLEKKIIKTPLEPNVTYSDDPLRMMRAI 178 Query: 172 RFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 RF A + I+ + +KI+++ERI +E+NK++ P + + + G+ Sbjct: 179 RFAAQLNFR-IEDTSFHSIKNNASRIKIITNERIITELNKIMMCDEPSHGFILLEKTGLL 237 Query: 232 KEIFLDVQEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS--------- 271 ++ + D +E D+L LR+ L+ Sbjct: 238 SYFLPELTALKGIEEIEGQKHKDNFYHTLEVVDNISRNTDNLWLRWAALLHDIGKAPTKK 297 Query: 272 -------------WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE------ 312 ++ K + + K+ +P + + ++ I E Sbjct: 298 FSKKVGWTFHGHEFKGAKMVYHLFKRLKMPLNDKMKFVQLMVRMSSRPIAVIDESATDSA 357 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV-------------LSDIIHWK 359 +++L + GD + + + L ++T ++ + + + H + Sbjct: 358 VRRLVHDAGDHI-----EDLMTLCEADITTKNPFRFKKYHSNFQKVRDKIVEVEERDHVR 412 Query: 360 KPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 P++G+++++ + + P +++G I K ++ + + + Sbjct: 413 NFQPPVSGEEIMEAFNLQPCREIGMIKSAIKNSILDGHIPNEHDAAYAFM 462 >gi|257094033|ref|YP_003167674.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046557|gb|ACV35745.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 448 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 16/220 (7%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 + L +G ++ +VGGAVRD L L +D D+AT P++V + F ++R + Sbjct: 44 IETLQEGGYQAYVVGGAVRDLLAGLVPKDFDVATNATPEQVRQCFRRSRI----IGRRFQ 99 Query: 79 TIKIICRKKYFDITTLRSDLIT----------DGRYAKVVFTRDWKADSLRRDFTINALY 128 + + + ++TT R GR + D+ RRDFT+NALY Sbjct: 100 IVHVNMGVETIEVTTFRGHHGEQGGNKAQTDDQGRVLRDNVFGSQAEDAARRDFTVNALY 159 Query: 129 ADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D + +IDY G+ DL+ +T++ IGD R ED +R+LR R A G ID + Sbjct: 160 YDPTAETIIDYHHGVADLKQKTLRMIGDPKTRYREDPVRMLRAVRLAAKLG-LMIDPEAS 218 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 + ++ + R++ E+ KLL + + + + + Sbjct: 219 RPIREMTDLIENVPPSRLFDEMLKLLTSGHAVRCVTRLRE 258 >gi|253999870|ref|YP_003051933.1| poly(A) polymerase [Methylovorus sp. SIP3-4] gi|253986549|gb|ACT51406.1| poly(A) polymerase [Methylovorus sp. SIP3-4] Length = 455 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 16/233 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K I L K ++ IVGGAVRD L+ +D D+AT P++V R+F Sbjct: 40 INRKLLST-GAIKTTEGLQKAGFEAFIVGGAVRDLLLKKRPKDFDVATNATPEQVNRVFR 98 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------GRYAKVVFTRDWKA 115 ++R + + ++ + +++T R + D GR + + Sbjct: 99 RSRI----IGRRFRLVHVLFGDETVEVSTFRGSHLNDDGDAKIADSGRILRDNVFGSQED 154 Query: 116 DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+LRRDFT NALY D + V+D+ G D++ ++ IGD R ED +R+LR R Sbjct: 155 DALRRDFTANALYYDPSSEDVLDFHHGYEDIQAGILRMIGDPVTRYREDPVRMLRAIRLS 214 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 A G K +D K L+ + + R++ E+ KL + + + ++ + Sbjct: 215 AKLGLK-LDKATEAPIPKLADELQEVPASRLFDEMLKLFLSGHAMESVKALRQ 266 >gi|152980497|ref|YP_001354880.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille] gi|166233860|sp|A6T2Y3|CCA_JANMA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|151280574|gb|ABR88984.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille] Length = 416 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 129/321 (40%), Gaps = 61/321 (19%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ IVGGAVRD L+ ++V+D D + P+ ++ K P + T Sbjct: 2 KTYIVGGAVRDELLGVAVKDRDYVVVGATPEAMVAQGYTPVGKDFPVFLHPKT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y VF D + D +RRD TINA+ D+ G ++D GG Sbjct: 55 -HAEYALARTERKTAPGYKGFVFHTDASVTLEEDLIRRDLTINAMAQDEDGSIVDPFGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKIL 200 DL R + + A ED +RILR RF A + E + +++ L+ + + L Sbjct: 114 RDLELRIFRHVSPA---FAEDPVRILRIARFAARFPEFTVAAETNTLMQDMVTAGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ + L P + + G + I + LD L V + Q + +I Sbjct: 171 VPERVWQELARGLMEVRPSRMFEVLRDCGALQRILPE-----LDVLWGVPQPAQ-YHPEI 224 Query: 261 DSLLRFIVLISW-------------------------------------QDKKSILSMAK 283 D+ + +++I + K + +++K Sbjct: 225 DTGVHIMLVIDYAAGIKADLPVRCAALLHDLGKGVTLPDQWPRHHGHEMHSVKLVDTVSK 284 Query: 284 KFSLPREIRYFLISFFNCNFN 304 + +P + R + + N Sbjct: 285 RLKIPNDCRDLALMTAREHGN 305 >gi|165976336|ref|YP_001651929.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876437|gb|ABY69485.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 412 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 53/362 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+NL V+D D + P++++ + P + T + Sbjct: 27 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKTKE----- 81 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R + +G + D +RRD TINA+ D G++ D GG Sbjct: 82 ---EYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 138 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLK 198 DL NR ++ I A ED LR+LR RF A + G K ++ L+ + A L Sbjct: 139 QDLANRLLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 195 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K NP + G +F + D+L V + EQ Sbjct: 196 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPE-----FDRLFGVPQPEQ-HHP 249 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +IDS + ++ ++ AK+ + E L+ C+ K L+ +I Y Sbjct: 250 EIDSGVHTLL---------VIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHY 300 Query: 319 LYG------DKVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKK 360 + + + +LK+ + H + + +L+V + + W+K Sbjct: 301 GHEVKGVKPARELSNRLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRK 360 Query: 361 PL 362 P Sbjct: 361 PQ 362 >gi|89898029|ref|YP_515139.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56] gi|89331401|dbj|BAE80994.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56] Length = 427 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 24/295 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 42 SPHALSVVKTLRKAGYKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC----I 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + I + +++T RS D K + D LRRDFTIN L+ D Sbjct: 98 LVGKRFRLAHIRFSNQIIEVSTFRSGSADEDSLIIKDNLWGTAEEDVLRRDFTINGLFYD 157 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL NR ++ IGD R +D +R+LR + + + +D L A Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILSR-AQFTVDPKTLEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + + L S R++ E+ K+L + I + +F + ++ +L++ Sbjct: 217 LRECRYELIKSSQARVFEELIKMLGSGVSSKFFKLTVEYQILEILFPYMDKVF--RLNKT 274 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 +E EQ F + DK KK++ R ++ F NFN Sbjct: 275 LE-EQTF-----------ACLDVLDKNISQ---KKYNYDRHQLMAVLLFPIVNFN 314 >gi|21325858|dbj|BAC00479.1| tRNA nucleotidyltransferase/poly(A) polymerase [Corynebacterium glutamicum ATCC 13032] Length = 440 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 86/433 (19%), Positives = 157/433 (36%), Gaps = 56/433 (12%) Query: 31 IVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 +VGG+VRD+ + D+D T+ P+ I V T I++GT+ + + Sbjct: 1 MVGGSVRDAFLGELGHDLDFTTSARPEETKAILDDYADVVWDTGIAFGTLSAEKHGQQIE 60 Query: 91 ITTLRSDLIT-DGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVGGLNDL 145 ITT RSDL + R +V F + D +RRDF +NA+ AD + D VGGL DL Sbjct: 61 ITTFRSDLYDGNSRNPEVTFGDTLEGDLIRRDFKVNAMAVEIQADGELTFHDPVGGLEDL 120 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERI 205 T+ +D LR+LR RF + + + A + + + ++ ER+ Sbjct: 121 LTHTLDTPATPEQSFNDDPLRMLRAARFVSQLN-FTLAPRVITAMTEMAQQITRITVERM 179 Query: 206 WSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ-------------LSQVIEA 252 E++K++ KNP I M GI + I+ ++ + + Q L + +A Sbjct: 180 QVELDKMILGKNPEAGIDLMVESGIAQIIYPEIPAMQMTQDEHMQHKDVYAHSLQVMRQA 239 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMA----------------------KKFSLPRE 290 E D +LR+ L+ K +K ++ Sbjct: 240 IDQEEDGPDLVLRWAALLHDCGKPDTRDFNEEGRVSFHQHEVVGAKLVRRRMRKLKYSKQ 299 Query: 291 IRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 + + + S + Y ++ +L + + Sbjct: 300 MVGDVGQLVFLHMRFHGFSEGQWTDSAVRRYAADAGELLPRLHKLVRADCTTRNKRKAAR 359 Query: 348 ILQVLSDIIHW----------KKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSS 396 + + + L G+++++ I G +VG K+ + Sbjct: 360 LQATYDHLEERIAEIAAKEDLARVRPDLDGNEIMEILNIQAGPEVGKAWAFLKELRLERG 419 Query: 397 FQLSQEDLHHLLR 409 L +E L+ Sbjct: 420 -PLDREVAIAELK 431 >gi|317493723|ref|ZP_07952140.1| poly A polymerase head domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918050|gb|EFV39392.1| poly A polymerase head domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 416 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD +NL V D D P+ ++ + K P + K Sbjct: 2 KIFLVGGAVRDKRLNLPVYDRDWVIEGATPEELIAQGFEQVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y V F D + D LRRD TINA+ G +ID GGL Sbjct: 54 SHEEYALARTERKSGRGYTGFVTYFAPDVTLEQDLLRRDLTINAMAESADGTLIDPYGGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL N+ ++ + DA ED LR+LR RF A + ++ L+ + L+ Sbjct: 114 DDLNNKVLRHVSDA---FHEDPLRVLRVARFAARFAHLGFHVAAETMALMTQMTTDNELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L ++P + + G +F ++ + + A + + Sbjct: 171 NLTPERVWRETEKALMTQSPQIYFQVLRDCGALAILFPEIDNLF------GVPAPEKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA K + ++R+ ++ + K L+ PE+ + Sbjct: 225 EIDTGIHTLM---------ALAMAAKLTEEIDVRFATLT----HDLGKGLTPPELWPHHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G + + + N ++ I+ D+IH + L P+T Sbjct: 272 GHGPAGVKLVEALCQRMRVPNAV-RELAKIVAEYHDLIHTVEKLRPVT 318 >gi|91789415|ref|YP_550367.1| poly(A) polymerase [Polaromonas sp. JS666] gi|91698640|gb|ABE45469.1| poly(A) polymerase [Polaromonas sp. JS666] Length = 550 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 138/334 (41%), Gaps = 37/334 (11%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT- 66 D ++++ L + ++ +VGGAVRD L+ L +D D+AT P++V +F + Sbjct: 46 PKLVDDRAMDVVRTLKQAGFEAYVVGGAVRDLLVGLRPKDFDVATDATPEQVKSLFRRAF 105 Query: 67 ----RYKVIPT----SISYGTIKIICRKKYF-----------------DITTLRSDLITD 101 R++++ + I++ + + ++ ++ + + Sbjct: 106 IIGRRFRIVHVIYGRGREHEVIEVSIFRAHLDSSLAEQVGGNERTSKSELAGMKHAVDSS 165 Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRI 160 GR + + D+ RRDFTINA+Y D + ++ +DY G+ D + + I+ IG+ R Sbjct: 166 GRVLRDNVWGPLEEDAARRDFTINAMYYDPETQIVVDYHNGIRDAKKKIIRMIGNPAVRY 225 Query: 161 LEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 ED +RI+R RF A + + L + R++ E+ KLL+ + Sbjct: 226 REDPVRIIRAVRFGAKLSALGFKFEDKTSAPLREMSSLLADVPQSRLFDEMLKLLQTGHS 285 Query: 219 LNAIVHMYNGGIFKEIFL------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISW 272 L ++ + G+ I+ + L+ +V E K + + I W Sbjct: 286 LASVEQLKTLGLGTGIYPLLDVVVEAAHEPFLNLALKDTDRRVGEGKPVAPSFLLSCILW 345 Query: 273 QDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 D + A++ + L + FN K Sbjct: 346 SDVRD--GWARRRKRGEHLMPALQDAIDDAFNAK 377 >gi|289578319|ref|YP_003476946.1| polynucleotide adenylyltransferase region [Thermoanaerobacter italicus Ab9] gi|297544599|ref|YP_003676901.1| polynucleotide adenylyltransferase region [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528032|gb|ADD02384.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter italicus Ab9] gi|296842374|gb|ADH60890.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 388 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 169/405 (41%), Gaps = 38/405 (9%) Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 DLI +L ++ K + KS IVGG VRD L+ + DID+ I I Sbjct: 9 DLIRLLKEISLKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLKGDIV 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQ- 131 ++ T + DI + R + + + D RRDFTINAL D Sbjct: 69 VYEAFRTATLSYHNFSIDIISARKEYYECPAALPTIEFSNIYDDMARRDFTINALAYDVM 128 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +GK++DY GL DL+ I+ + ++D RI R R+ Y I+ Sbjct: 129 EGKILDYFNGLEDLKKGVIRVLH--SKSFIDDPTRIFRAIRYATRY-SFEIEEKTHNLMK 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQV 249 ++ + +++LS++RI +E+ +L+ I + + GI K IF ++ +LD + Sbjct: 186 ESIENIRLLSADRIRNELLLVLKEDKAKEMIEKIISYGIDKVIFDEITLNTQNLDTVYTN 245 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKT 307 IE E L RF+VL + ++ I + KK + + L + F N + Sbjct: 246 IEVE---------LYRFLVLFYYLKEEDINEIEKKLRINKIYFKALKDLFFLREQLNCQN 296 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 +I +I++ ++V+ A +++ + K + G Sbjct: 297 KNIRKIRETIDKTKEEVLRA-IEVMEGEKAEKII------------------KGKLTVRG 337 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 D+ G+PP G +L + IN +E++ L++LI Sbjct: 338 KDIKNLGLPPSPLYGELLDKVFEAKINGIITTGEEEIE-FLKRLI 381 >gi|240016538|ref|ZP_04723078.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria gonorrhoeae FA6140] Length = 410 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 124/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRAARFAARYGFEIAEETIKLMRQMVENDEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G+ K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEMLRECGVLKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|283457076|ref|YP_003361640.1| PcnA tRNA nucleotidyltransferase [Bifidobacterium dentium Bd1] gi|283103710|gb|ADB10816.1| PcnA tRNA nucleotidyltransferase [Bifidobacterium dentium Bd1] Length = 441 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 80/426 (18%), Positives = 153/426 (35%), Gaps = 70/426 (16%) Query: 37 RDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPTSISYGTIKIICRKK-----YFD 90 RD L++ D+D T+ P++ I + R +GT+ + R++ + Sbjct: 2 RDLLLHRKSHDLDFCTSARPEQFEHILRRFGRDGFWDMGRKFGTLGAMRRREDGIEVKVE 61 Query: 91 ITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNR 148 +TT RSD D R +V + + D RRDFT+NA+ + +D GG NDL Sbjct: 62 VTTYRSDTYDPDSRKPEVNYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPFGGANDLVKG 121 Query: 149 TIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSE 208 ++ + +D LR++R RF A G + I+ + A + + I+S+ER+ E Sbjct: 122 VLRTPVNPRQSFDDDPLRMMRAVRFVAQLGFR-IEPETAEALSDMVERIDIVSAERVRDE 180 Query: 209 INKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK--------- 259 + KLL + P I + + G+ +F ++ + L ++ + + VFE Sbjct: 181 LTKLLLSDRPRAGIEALVDSGLADIVFPEIPALQL-EIDEHHRHKDVFEHTMIVVDRAVA 239 Query: 260 -----------IDSLLRFIVLISWQDKKSILSM----------------------AKKFS 286 D LR L+ K K Sbjct: 240 LETGPDGPVPAPDLTLRLAALMHDIGKPKTRRFEPGGKVSFHHHDAVGAKMTRKRLKALR 299 Query: 287 LPREIRYFLISFFNCNFN-----QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLT 341 + + N + ++ + +++ G + +L Sbjct: 300 FDHHMIEDVSELVNLHLRFHGYVEEPWTDSAVRRYVKDAGP--LYERLNRLTRADATTQN 357 Query: 342 HQDTCFILQVLSDIIHWKKPL----------FPLTGDDVVKY-GIPPGKKVGNILVHCKQ 390 + + ++ + L L GD++++ GI PG VG H + Sbjct: 358 RRKAMIFSSAMDEMEQRVRDLKKKEDFDAIRPDLNGDEIMQLLGIEPGPMVGRAYKHMLE 417 Query: 391 EWINSS 396 +++ Sbjct: 418 YRLDNG 423 >gi|149376043|ref|ZP_01893809.1| metal dependent phosphohydrolase [Marinobacter algicola DG893] gi|149359680|gb|EDM48138.1| metal dependent phosphohydrolase [Marinobacter algicola DG893] Length = 369 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 79/378 (20%), Positives = 145/378 (38%), Gaps = 29/378 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D + T P+ ++R K P + T + Sbjct: 2 KTYLVGGAVRDELLGLPVKDRDWVVTGATPEDMLRKGFKQVGADFPVFLHPDTRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D RRD TINA+ G+++D G Sbjct: 57 ---EYALARTERKQGRGYHGFTVYSAPDVPLEDDLKRRDLTINAMAKSTAGEIVDPFHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNID-SDGLVASIKAKKGLK 198 DL++ ++ + +A ED LRILR RF A G + + L+ + + + Sbjct: 114 QDLQDHKLRHVSEA---FAEDPLRILRTARFAARLQPQGFTIAEPTMALMRQMVDQGEVG 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA-EQVFE 257 L ER+W EI + L + P + G + +++ L+ S I A + E Sbjct: 171 DLVPERVWQEIQRALHEQEPGTFFEVLRECGALAVLIPELEP--LEAFSGAIGALRRAHE 228 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 D+ +RF L+S + A+ P + + + T++ + L Sbjct: 229 SSDDTSVRFAALLSPLAPAEARNRARALKAPNDCQDLTRLITDVIPKIHTITSHDADLLL 288 Query: 318 YLYGDKVMIAKLKIF--LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 + + + F L + + + +L H + +++ G Sbjct: 289 DMLDGADVWRRADRFSGLLVALKCALPEPERHRVDLLKSAQHAATG---VQAKTLMEQGF 345 Query: 376 PPGKKVGNILVHCKQEWI 393 GK++G + + I Sbjct: 346 R-GKELGEAIRKERLRRI 362 >gi|328952111|ref|YP_004369445.1| CBS domain containing protein [Desulfobacca acetoxidans DSM 11109] gi|328452435|gb|AEB08264.1| CBS domain containing protein [Desulfobacca acetoxidans DSM 11109] Length = 883 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 87/416 (20%), Positives = 164/416 (39%), Gaps = 28/416 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRYKVIPT 73 L + + ++ + +VGG VRD + DID+ R ++ + + + Sbjct: 471 LKQVGRVADELGYNAYVVGGFVRDLFLRHENLDIDLVIEGDAVTFARHYASRFQNVRVRV 530 Query: 74 SISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--- 129 + T II + D+ T R++ +V K D RRDFTIN L Sbjct: 531 FQKFKTAVIIYPDDFKVDVATARTEYYETPGALPIVERSSLKMDLYRRDFTINTLAVKLN 590 Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGL 187 G +IDY G DL++ I + + +ED R+ R RF +G K + L Sbjct: 591 ERHFGILIDYFGAQRDLKDGRISVLHN--LSFVEDPSRVFRAIRFEQRFGFKITKLTANL 648 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-----IS 242 + + LS R++SE+ +L +NP+ AI + + K I ++ Sbjct: 649 IENAGRINFFDRLSGTRLFSELKLILMEENPIPAISRLAEFDLLKFIHPMLRYDANTTWL 708 Query: 243 LDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI--- 296 LDQ+ V+ + + + F+ LI ++ +L + ++ ++ + L+ Sbjct: 709 LDQIRGVLSWHDLLFLEDSYERWYVYFLGLIEPLKEEQLLELTRRLNMQTKFAETLLWAK 768 Query: 297 -SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + F P K+++YL + L + + FI Q+ Sbjct: 769 GAADHTLFRLYQRENPSPKEIYYLLHELSTEFLLYMMAKTRREGSKKAISLFITQL---- 824 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + L G D++ G PG + IL H ++ Q ++++ +LR+ Sbjct: 825 ---RNVRPHLAGKDLLDMGYEPGPRYKRILQHLLDAHLDGQVQTKEDEIASVLRRF 877 >gi|325125950|gb|ADY85280.1| poly(A) polymerase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 351 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 157/364 (43%), Gaps = 20/364 (5%) Query: 49 DIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-K 106 DIAT+ P+ V F+K+ I T I +GT+ ++ ++ITT R++ D R K Sbjct: 2 DIATSAYPEEVKETFAKS----IDTGIQHGTVTVLYGGSSYEITTFRTESGYQDFRRPDK 57 Query: 107 VVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 V F ++ D RRDFTINAL ++QG++ID GL DL+ R IK +G A R ED LR Sbjct: 58 VTFVQNLDEDLKRRDFTINALAMNRQGEIIDLFDGLGDLKRRVIKAVGVAEDRFHEDALR 117 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 ++R RF + +++ A I + L +S ERI E KL K+ A Sbjct: 118 MMRAVRFMSQL-SFSLEEKTRQAIINNHELLSKISVERIREEFVKLALGKDSRQAFKDFL 176 Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK--SILSMAKK 284 G+ +E DQLS + + + + + VLI+ K + K Sbjct: 177 ATGLSEEC--PGLAGKKDQLSVLTDLKAGPDDEAVFWSLIAVLINLPADKISPFMRAWKN 234 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 + + +++ F+ + + G + + A LK+ L Sbjct: 235 SNAMNQQVRQIVAAFDLLSRGEESDFD-----LFEIGQENLEAALKLAGLLG----KPLS 285 Query: 345 TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + +L + + + G ++K GI P ++G +L + ++ + SQ + Sbjct: 286 SQVLLDRYNRLPIKAAGELAIDGQWLIKEGIKPSPELGQLLRKALEGVVSGQVENSQAAI 345 Query: 405 HHLL 408 L Sbjct: 346 AEFL 349 >gi|169795274|ref|YP_001713067.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AYE] gi|184158861|ref|YP_001847200.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii ACICU] gi|213158062|ref|YP_002320113.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AB0057] gi|215482807|ref|YP_002325010.1| Multifunctional CCA protein [Acinetobacter baumannii AB307-0294] gi|239502472|ref|ZP_04661782.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AB900] gi|301346881|ref|ZP_07227622.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AB056] gi|301510426|ref|ZP_07235663.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AB058] gi|301596783|ref|ZP_07241791.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii AB059] gi|332850381|ref|ZP_08432701.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6013150] gi|332871807|ref|ZP_08440242.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6013113] gi|332875289|ref|ZP_08443121.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6014059] gi|226702030|sp|B0VBE4|CCA_ACIBY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702123|sp|B7GZN3|CCA_ACIB3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702124|sp|B7I3L8|CCA_ACIB5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702125|sp|B2HV23|CCA_ACIBC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|169148201|emb|CAM86064.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AYE] gi|183210455|gb|ACC57853.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii ACICU] gi|213057222|gb|ACJ42124.1| tRNA nucleotidyl transferase [Acinetobacter baumannii AB0057] gi|213988422|gb|ACJ58721.1| Multifunctional CCA protein [Acinetobacter baumannii AB307-0294] gi|322507763|gb|ADX03217.1| cca [Acinetobacter baumannii 1656-2] gi|323518773|gb|ADX93154.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii TCDC-AB0715] gi|332730652|gb|EGJ61963.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6013150] gi|332731215|gb|EGJ62514.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6013113] gi|332736546|gb|EGJ67541.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii 6014059] Length = 412 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 82/424 (19%), Positives = 159/424 (37%), Gaps = 59/424 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDYLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ GK+ D GG Sbjct: 57 ---EYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 NDL N+ ++ + +A ED LR+LR RF A Y I + L+ ++ L Sbjct: 114 NDLENKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L + + + G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALMENHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPAEELPRHIMHEERGIKPVTQLCERLRV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + + +S + +L + +L +++ F+ + + Sbjct: 291 PTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPERVEAFVQACECDAKGRL 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + + + + D+ + G ++G +L+ + E + F+ + Sbjct: 351 GLEDRPYPQAQYMREAMQIVRSIKVQDLPEN--IKGAEIGEMLIQYRIEALA-EFKNQHQ 407 Query: 403 DLHH 406 L H Sbjct: 408 SLSH 411 >gi|326317987|ref|YP_004235659.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374823|gb|ADX47092.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 530 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 135/337 (40%), Gaps = 45/337 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 39 PELVDRRATEVVRTLQQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRA- 97 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 98 ---FIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAEQVSGNEKTSKAALAGMQHA 154 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFTINA+Y D + V+DY G+ D R + I+ IGD Sbjct: 155 VDASGRVLRDNVWGPQDEDATRRDFTINAMYYDPATQVVVDYHKGIQDARKKVIRMIGDP 214 Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A I+ ++++ L + R++ E+ KLL+ Sbjct: 215 ATRYREDPVRIIRAVRFAAKLAGVGFTIEPKTAAPLVQSQTLLADVPQSRMFDEMLKLLQ 274 Query: 215 AKNPLNAIVHMYNGGIFKEIFL------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 + + I + G+ I+ + S + +V E K + + Sbjct: 275 TGHAIATIEQLKKLGLSTGIYPLLDVVVERAGTSFVSAALADTDRRVGEGKPVAPSFLLA 334 Query: 269 LISWQDKKSI--LSMAKKFSLPREIRYFLISFFNCNF 303 + WQD K+ +A++ ++ + F+ Sbjct: 335 CVLWQDVKTQWDRRLAQREHPFPALQGAIDDVFDQRI 371 >gi|170691343|ref|ZP_02882508.1| poly(A) polymerase [Burkholderia graminis C4D1M] gi|170143548|gb|EDT11711.1| poly(A) polymerase [Burkholderia graminis C4D1M] Length = 533 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 31/246 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 80 PTLISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRAR 139 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ + +T R+ D T G Sbjct: 140 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASG 195 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 196 RVLRDNVWGEQHEDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYR 255 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A + I+ K + + + R++ E+ KL+ + + L Sbjct: 256 EDPVRMLRVVRFAAKL-DFEIEDATRDPIAKMADLINNVPAARLFDEMLKLMLSGHALAC 314 Query: 222 IVHMYN 227 + + Sbjct: 315 LKRLRQ 320 >gi|227824836|ref|ZP_03989668.1| metal-dependent phosphohydrolase [Acidaminococcus sp. D21] gi|226905335|gb|EEH91253.1| metal-dependent phosphohydrolase [Acidaminococcus sp. D21] Length = 484 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 4/227 (1%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 S +I +L L K ++ +VGGAVRD L D DI T+ P+ R+ Sbjct: 2 AALFPSYVITVLELFRKHGFEAYVVGGAVRDLLCGKHPHDYDIVTSARPEETRRLCKGAG 61 Query: 68 YKVIPT-SISYGTIKIICRKKYFDITTLRSDLITDGRYAK--VVFTRDWKADSLRRDFTI 124 V+ ++G + ++ + ++ R ++ + V + + + D RRDFT+ Sbjct: 62 LSVVENLGENFGVLVLLVEGRAVEVAAYRKEVYGTDAHRPSGVAYCQTLEEDLARRDFTV 121 Query: 125 NALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 NA+ D G + D G DL + ++ +G R ED LR+ R RF A G ++ Sbjct: 122 NAMAMDLAGNLTDPYSGQRDLEHHVLRVVGSPSDRFSEDALRMFRACRFVAQLGFL-PEA 180 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIF 231 L A K LS R+ +E++KLL A + M G+ Sbjct: 181 GILPAIKAEAPRAKGLSLSRVKAELHKLLRAPYAGQGMNLMVQSGLA 227 >gi|171057366|ref|YP_001789715.1| poly(A) polymerase [Leptothrix cholodnii SP-6] gi|170774811|gb|ACB32950.1| poly(A) polymerase [Leptothrix cholodnii SP-6] Length = 498 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 130/309 (42%), Gaps = 47/309 (15%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D + +++ L ++ IVGGAVRD L+ +D D+AT P++V F + Sbjct: 36 PGLVDDRAVKVVTTLQDAGFEAYIVGGAVRDLLLGHRPKDFDVATNATPEQVKSHFRRA- 94 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRSD-------------------------- 97 + + ++ + + +++T R+ Sbjct: 95 ---FIIGRRFRIVHVVHGRGREHEVIEVSTFRAKPDASAAEQVSGNEKTSKAALQGKSHV 151 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + +GR + D+ RRDFT+NALY D +G++ +DY G+ D + R ++ IG+ Sbjct: 152 VDAEGRVLRDNVWGPQIDDAARRDFTVNALYYDPRGQIVVDYHNGIADAKKRVLRMIGEP 211 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +RI+R RF A G I+ I+ L + + R++ E+ KLL+ Sbjct: 212 EARYREDPVRIIRVVRFAAKLG-FEIEPATRAPIIRMADLLANVPASRLFDEMIKLLQTG 270 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLD-----------QLSQVIEAEQVFEWKIDSLLR 265 + L ++ + G+ + +F + + D Q++ +V E K + Sbjct: 271 HSLASLEELRKQGLHRGVFPILDAVLDDAHRHDGREKFIQMALADTDRRVNEGKPVAPSF 330 Query: 266 FIVLISWQD 274 + + W D Sbjct: 331 MLACMLWHD 339 >gi|220904454|ref|YP_002479766.1| polynucleotide adenylyltransferase protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868753|gb|ACL49088.1| Polynucleotide adenylyltransferase region [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 905 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 88/427 (20%), Positives = 159/427 (37%), Gaps = 25/427 (5%) Query: 11 HDSDLINILSLLNKG-EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +L+++ L + VGG VRD L+N + QDID+ + + + Sbjct: 467 SAKNLLHLAGRLGRDLGLPVYAVGGFVRDLLLNRANQDIDLVVEGNGIALAKALAAELGG 526 Query: 70 VIPTSISYGTIKIIC-----RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + + T +I R+ D+ T R + V K D RRDF+I Sbjct: 527 RVREHQEFLTSVVIFKDAEGRESRIDVATARLEYYEYPAALPTVELSSIKMDLFRRDFSI 586 Query: 125 NALYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 NAL G+++D+ GG D++ R I+ + +ED R LR RF Y + Sbjct: 587 NALAVRLDSTPFGQLVDFFGGQRDIKERIIRVLH--TLSFVEDPTRCLRAVRFEQRYDFR 644 Query: 181 NID-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI----- 234 S+ L+ + K + LS R++ E + + +NPL + + GI I Sbjct: 645 IGAGSEKLIKNAMGLKLMDRLSGPRLFHEFKLICDEENPLACLERLDQLGILPAIAQQLA 704 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPREI 291 + L++L ++ ++ ++ L+ F+ L + ++ LP Sbjct: 705 LTPGKRKILEELQDMLSWYRLLYFEKMPQPWLVYFLGLCHGLPYVETSVLYRRMGLPENK 764 Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH---YNNLTHQDTCFI 348 R ++ + K+ ++ L L+L Y D Sbjct: 765 RNDILGQREQMRTVRGRLENRQKRQGVQEFKVSVLHGLLAPLSLESLLYLMAETNDEGLQ 824 Query: 349 LQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + I W+ +TG+D+ G+ PG IL Q ++ +E+ L Sbjct: 825 KNLSRYITQWRHEKVDITGEDLKNMGLSPGPLFSQILRAVLQAKLDGE-TPGREEQLALA 883 Query: 409 RKLIASS 415 R L + Sbjct: 884 RSLARNR 890 >gi|162286726|ref|YP_001085363.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii ATCC 17978] gi|226702127|sp|A3M767|CCA_ACIBT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|193077880|gb|ABO12761.2| tRNA nucleotidyl transferase [Acinetobacter baumannii ATCC 17978] Length = 412 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 83/424 (19%), Positives = 159/424 (37%), Gaps = 59/424 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDYLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ GK+ D GG Sbjct: 57 ---EYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 NDL N+ ++ + +A ED LR+LR RF A Y I + L+ ++ L Sbjct: 114 NDLENKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L + + N G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALMENHADIYFQTLRNCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPAEELPRHIMHEERGIKPVTQLCERLRV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + + +S + +L + +L +++ F+ + + Sbjct: 291 PTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPERVEAFVQACECDAKGRL 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + + + + D+ + G ++G +L+ + E + F+ + Sbjct: 351 GLEDRPYPQAQYMREAMQIVRSIKVQDLPEN--IKGAEIGEMLIQYRIEALA-EFKNQHQ 407 Query: 403 DLHH 406 L H Sbjct: 408 SLSH 411 >gi|293609675|ref|ZP_06691977.1| phosphatase [Acinetobacter sp. SH024] gi|292828127|gb|EFF86490.1| phosphatase [Acinetobacter sp. SH024] Length = 412 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/405 (19%), Positives = 152/405 (37%), Gaps = 58/405 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDFLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ GK+ D GG Sbjct: 57 ---EYALARTERKSGKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL N+T++ + +A ED LR+LR RF A Y ++ L+ ++ L Sbjct: 114 TDLENKTLRHVSEA---FAEDPLRVLRVARFAARYSSYGFQIAPETMQLMQTMAESGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ERIW E ++ L + + + G K +F ++ + + Q + Sbjct: 171 ALTPERIWKETSRALLEDHADVYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPANELPRHIMHEERGVKPVTELCERLKV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + R +S + +L + +L +++ F+ + + Sbjct: 291 PTQTRQLALSVCKEHLKCHQIMSLKPGTVWRLLQRLDVLRRPERVEAFVQACECDAKGRL 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 ++ + + + D+ + G ++G +L+ Sbjct: 351 GLEDRPYPQAQYMLDAMQIVRSIKVQDLPEN--IKGAEIGEMLIQ 393 >gi|239617963|ref|YP_002941285.1| CBS domain containing protein [Kosmotoga olearia TBF 19.5.1] gi|239506794|gb|ACR80281.1| CBS domain containing protein [Kosmotoga olearia TBF 19.5.1] Length = 866 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 87/424 (20%), Positives = 163/424 (38%), Gaps = 38/424 (8%) Query: 13 SDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 + +L L D+ + +VGG VRD L+N+ DID+ RIFS T Sbjct: 453 RRIQTLLRFLGVVGDELLMPTYLVGGMVRDLLLNIPNYDIDVVVEGD----ARIFSHTVK 508 Query: 69 KVIPT----SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + S+ T I D+ T R++ + V T K D RRDF+ Sbjct: 509 RYFDVKIVEHKSFKTSSIFFSDGVRIDVATARTEFYEEPAVLPNVETSTIKKDLYRRDFS 568 Query: 124 INALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 INA+ ++ G ++D+ G DL I+ + + +ED RILR RF +G Sbjct: 569 INAMAIKLNHEEYGLLLDFFGCRKDLAKGIIRILHN--LSFIEDPTRILRAIRFEQRFGF 626 Query: 180 KNID-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-- 236 K + + L+ L+ ++ +R+ E+ K+L P NA+ M I K +F Sbjct: 627 KIEERTLQLLKKAVNDGYLERVTGQRLRDELEKILAEPEPQNAVKRMTKLDILKHLFPGV 686 Query: 237 ----DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 ++Q+ ++ E++ + ++++ ++S + ++ P+ + Sbjct: 687 RHSKELQKHFDRLFTRWETIEKLTNESRKITVMVMLVLENTPEESTDWIISRYGFPKRLP 746 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352 L + + + L Y ++ A H D +L Sbjct: 747 EVLKTSLRILKKLQEMEDWRFSNL-YRLMERPSAEIFHFIDA-------HFDEKKSNILL 798 Query: 353 SDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + + + G ++ KYG+ G ++ IL + L + + +RKL Sbjct: 799 KYLKALESNKPKVNGGILIQKYGLKEGPEIKMILKELYCARLEG---LPESEEEAFVRKL 855 Query: 412 IASS 415 + Sbjct: 856 LKEP 859 >gi|150025694|ref|YP_001296520.1| tRNA nucleotidyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149772235|emb|CAL43711.1| tRNA nucleotidyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 473 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 85/455 (18%), Positives = 164/455 (36%), Gaps = 64/455 (14%) Query: 17 NILSLLNKGEDK----SCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVM----RIFSKTR 67 I ++++ + S ++GG VRD ++ + DIDI + + Sbjct: 10 KIFEIISEASQELSIDSYVIGGFVRDLILKREFKKDIDIVAVGSGIELALKVSALLPHK- 68 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + +YGT + + R + VV + D RRDFTINAL Sbjct: 69 -PKVQVFKTYGTAMLRFEDTEIEFVGARKESYNLESRNPVVENGTLEDDQNRRDFTINAL 127 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G+++D GL DL N+TIK D +D LR+LR RF G I+ Sbjct: 128 AISLNKTNYGELLDPFDGLTDLENKTIKTPLDPDITYSDDPLRMLRGIRFATQLG-FTIE 186 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS- 242 + L + K + I+S ERI E+NK+L + P + ++ G+ I ++ ++ Sbjct: 187 ENSLNSIAKNTDRINIISGERIVDELNKILSSDKPSIGFLLLFKTGLLDIILPELTALNQ 246 Query: 243 LDQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSILSMAKKF------- 285 ++++ + D LR+ L+ K KK Sbjct: 247 VEEIEGHTHKNNFYHTLEVVDNICPNTNDVWLRWSALLHDIGKAPTKRFNKKQGWTFHGH 306 Query: 286 -----SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF-------- 332 + ++I L N + + L D V + ++ Sbjct: 307 EFLGGKMAKKIFERLHMPLNQKMKFVQKMVMMSSRPIVLSEDIVTDSAVRRLVFDAGQDV 366 Query: 333 ---LALHYNNLTHQDTCFILQV-------------LSDIIHWKKPLFPLTGDDVVK-YGI 375 + L ++T ++ + + + + P+TG+ +++ + I Sbjct: 367 ENLMTLCEADITTKNPNKFKKYHKNFEIVRQKIIEVEERDSVRNFQPPITGEQIMEIFDI 426 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 PG+++G + K+ + + + + K Sbjct: 427 KPGREIGVLKEAVKEAILEGEIPNEYQAAYKFVLK 461 >gi|313201844|ref|YP_004040502.1| poly(a) polymerase [Methylovorus sp. MP688] gi|312441160|gb|ADQ85266.1| poly(A) polymerase [Methylovorus sp. MP688] Length = 455 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 16/233 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + K I L K ++ IVGGAVRD L+ +D D+AT P++V R+F Sbjct: 40 INRKLLST-GAIKTTEGLQKAGFEAFIVGGAVRDLLLKKRPKDFDVATNATPEQVNRVFR 98 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------GRYAKVVFTRDWKA 115 ++R + + ++ + +++T R + D GR + + Sbjct: 99 RSRI----IGRRFRLVHVLFGDETVEVSTFRGSHLNDDGDAKIADSGRILRDNVFGSQED 154 Query: 116 DSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+LRRDFT NALY D + V+D+ G D++ ++ IGD R ED +R+LR R Sbjct: 155 DALRRDFTANALYYDPSSEDVLDFHNGYEDIQAGILRMIGDPVTRYREDPVRMLRAIRLS 214 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 A G K +D K L+ + + R++ E+ KL + + ++ + Sbjct: 215 AKLGLK-LDKATEAPIPKLADELQEVPASRLFDEMLKLFLSGYAMESVKALRQ 266 >gi|262199208|ref|YP_003270417.1| poly(A) polymerase [Haliangium ochraceum DSM 14365] gi|262082555|gb|ACY18524.1| poly(A) polymerase [Haliangium ochraceum DSM 14365] Length = 495 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 10/224 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D+D ++ L + K+ +VGG VRD L++ + +D D+AT+ P+++ IF R Sbjct: 22 DADADRVVRRLTRHGHKAYLVGGCVRDLLLDRNPKDFDVATSATPNQIRDIFRNCRI--- 78 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR----YAKVVFTRDWKADSLRRDFTINAL 127 + + K + +T R+ D D+ RRDFTIN L Sbjct: 79 -IGRRFRLAHVFFGDKIIETSTFRASPKHDDEGELLIRHDNVFGSATEDARRRDFTINGL 137 Query: 128 YAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + D + +VIDYVGG +DL +R ++ IGD R ED +R+LR +F A G +I+ Sbjct: 138 FYDVRAEEVIDYVGGADDLDSRLVRTIGDPDIRFREDPVRMLRAIKFAARLG-FDIEEQT 196 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 A ++ + ++ S R+ E+ +LL ++ ++ GI Sbjct: 197 YEALVRHRDEIRKCSPVRVGEEVYRLLRGGAARRSMELLHETGI 240 >gi|15836499|ref|NP_301023.1| poly A polymerase [Chlamydophila pneumoniae J138] gi|16752066|ref|NP_445432.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39] gi|7189807|gb|AAF38681.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39] gi|8979340|dbj|BAA99174.1| poly A polymerase [Chlamydophila pneumoniae J138] Length = 430 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 7/227 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF I Sbjct: 42 SPHALSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNC----I 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYAD 130 + I K+ +++T RS + K + D LRRDFTIN L+ D Sbjct: 98 LVGKRFRLAHIRFSKQIIEVSTFRSGSTDEDVLITKDNLWGTPEEDVLRRDFTINGLFYD 157 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++ A Sbjct: 158 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 I ++ L S R++ E+ K+L + N + + + +F Sbjct: 217 LIACRQELIKSSRARVFEELIKMLNSGAAKNFFQLLIENHLLEILFP 263 >gi|332526336|ref|ZP_08402462.1| poly(A) polymerase [Rubrivivax benzoatilyticus JA2] gi|332110472|gb|EGJ10795.1| poly(A) polymerase [Rubrivivax benzoatilyticus JA2] Length = 515 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 37/288 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT- 66 D + + ++ L ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 42 PRLLDDNAVRVVRTLKDAGHEAYIVGGAVRDLLVGLRPKDFDVATDATPEQVKALFRRAF 101 Query: 67 ----RYKVIPT----SISYGTIKIICRKKYFDIT----------TLRSDLIT-------D 101 R++++ + I++ + YFD T R ++ Sbjct: 102 IIGRRFRLVHVIFGRGREHEVIEVSTFRAYFDAAAAEQVKGNEKTARGEIADQRVVVDAS 161 Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRI 160 GR + D+ RRDFTINA+Y D + V+DY GGL D R R ++ IGD R Sbjct: 162 GRVLRDNVWGPQIEDAARRDFTINAMYYDPTTQVVVDYHGGLADSRARVLRMIGDPETRY 221 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED +RI+R R A G ++ K L + R++ E+ KLL+ + L Sbjct: 222 REDPVRIVRVVRIAAKLG-FEVEPATRAPMRKMAALLNNVPPSRMFDEMVKLLQTGHALK 280 Query: 221 AIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 ++ + G+ + +F + K D +R+ + Sbjct: 281 SLAELKKQGLDQGVFPVLDAAF---------RADARHPKRDEFIRYAL 319 >gi|121605882|ref|YP_983211.1| poly(A) polymerase [Polaromonas naphthalenivorans CJ2] gi|120594851|gb|ABM38290.1| poly(A) polymerase [Polaromonas naphthalenivorans CJ2] Length = 540 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 138/338 (40%), Gaps = 45/338 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++++ +L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 PKLVDERAMDVVHVLKQAGFQAYIVGGAVRDLLVGLRPKDFDVATDATPEQVKSLFRRA- 101 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRSD-------------------------- 97 + + +I + + +++T R+ Sbjct: 102 ---FIIGRRFRIVHVIYGRGREHEVIEVSTFRAHMDNALAEQVGGNERTSKSELAGMKHA 158 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + + GR + + D+ RRDFTINA+Y D + ++ +DY G+ D + + ++ IG+ Sbjct: 159 VHSSGRVLRDNVWGPMEEDAARRDFTINAMYYDPETEIVVDYHNGIGDAKKKIVRMIGNP 218 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A + + L + R++ E+ KLL+ Sbjct: 219 ALRYREDPVRIIRAVRFGAKLNALGFKFEEKTSAPLKEMCGLLADVPQSRLFDEMLKLLQ 278 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQ---EISLDQLSQV---IEAEQVFEWKIDSLLRFIV 268 + L +I + G+ I+ + E++ D ++ +V E K + + Sbjct: 279 TGHSLASIAQLKELGMGTGIYPLLDVVVEMADDPFLKLALQDTDRRVGEGKPVAPSFLLS 338 Query: 269 LISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + W D + ++ L + FN + Sbjct: 339 CVLWSDVRQGWD--RRLKRNEPAMPALQDAIDEAFNAR 374 >gi|158522765|ref|YP_001530635.1| CBS domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511591|gb|ABW68558.1| CBS domain containing protein [Desulfococcus oleovorans Hxd3] Length = 896 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 80/422 (18%), Positives = 162/422 (38%), Gaps = 42/422 (9%) Query: 17 NILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 +L +L + +VGG VRD ++ S +D+DI R F+ Sbjct: 476 PVLDILKNAGNTAAELEYSAYVVGGFVRDLFLSRSTEDVDIVIEGDGIAFAREFAGRMKA 535 Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + +GT I D+ + R + V K D RRDFTIN L Sbjct: 536 RVHYYKKFGTAVITFADGSKIDVASARLEYYQFPAALPTVEMSSIKLDLFRRDFTINTLA 595 Query: 129 ----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNID 183 D+ G ++D+ D++ +TI+ + +ED RI R RF +G Sbjct: 596 VCLNPDKFGLLVDFFSAQRDIKEKTIRVLH--SLSFVEDPTRIFRAVRFEQRFGFTIGKM 653 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++GL+ + + + LS R++ E+ ++LE +P+ AI + + + + +I Sbjct: 654 TEGLIKNAVKMEFFRRLSGHRVFGELRQILEEDDPVPAIERLAEFNLLVSLH-EALKIDK 712 Query: 244 DQLSQVIEAEQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 ++ + +V W + ++ +VL+ +++ + + LP R Sbjct: 713 KTVAALHATREVVSWYDLLFVDKPYMKWMVYLMVLMRGMAQQTTEDLCDRLELPPRHREM 772 Query: 295 -------LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 +F + + E+ + + + ++ L+ ++T DT Sbjct: 773 ADAGRREADTFLHWIQRNPGIKNSELYQRLFGF---------RVEQMLYVMSVTDSDT-V 822 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 + I+ + + G D+ + GI PG IL ++ + +++L Sbjct: 823 KKHISRYILTLQHVAPLIKGKDLNEIGIAPGPLYSEILRKILYARLDEKVRTREDELEFA 882 Query: 408 LR 409 +R Sbjct: 883 MR 884 >gi|323524827|ref|YP_004226980.1| poly(A) polymerase [Burkholderia sp. CCGE1001] gi|323381829|gb|ADX53920.1| poly(A) polymerase [Burkholderia sp. CCGE1001] Length = 532 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 31/246 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 79 PTLISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRAR 138 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ + +T R+ D T G Sbjct: 139 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASG 194 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 195 RVLRDNVWGEQHEDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYR 254 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A + ID K + + + R++ E+ KL+ + + L Sbjct: 255 EDPVRMLRVVRFAAKL-DFEIDDATRAPIAKMADLINNVPAARLFDEMLKLMLSGHALAC 313 Query: 222 IVHMYN 227 + + Sbjct: 314 LKRLRQ 319 >gi|73619900|sp|Q8CWL6|CCA_VIBVU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase Length = 407 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 82/403 (20%), Positives = 152/403 (37%), Gaps = 61/403 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + V D D + ++++ K P + T + Sbjct: 2 EVYLVGGAVRDKLLGIPVYDQDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKTKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F+ D + D LRRD TINA+ D QG + D GG Sbjct: 57 ---EYALARTERKTGQGYKGFECFFSPDVALEEDLLRRDLTINAIAMDSQGVLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + +A +ED LR+LR RF A ++ L+ SI A L Sbjct: 114 QDLQNRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L++ER+W E +K L P + + G + ++ + + Q + Sbjct: 171 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ AEQ + +++RF + K K I + ++ + Sbjct: 231 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKGVTPPSEWPSHKMHCHTGLKLIKQLCERVRV 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-------KVMIAKLKIFLALHYNNL 340 P E R + + N + + + + ++ + + L A H Sbjct: 291 PNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAERLNDILLCCQADHAGRQ 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 QD + + + + +++ G G + + Sbjct: 351 GLQDHPYPQAERIQLAYQAALSVEVQS--IIQDGFK-GPAIRD 390 >gi|319951891|ref|YP_004163158.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulophaga algicola DSM 14237] gi|319420551|gb|ADV47660.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Cellulophaga algicola DSM 14237] Length = 473 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 84/458 (18%), Positives = 164/458 (35%), Gaps = 56/458 (12%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDRV 59 M + + I + + ++GG VRD L+ + +DIDI + Sbjct: 1 MTHTNHEQALLNPIFKIISTAAKELNLDCYVIGGFVRDYLLARGTAKDIDIVAIGSGIEL 60 Query: 60 -MRIFSKTRYKV-IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADS 117 ++ SK + K + ++GT I + R + + VV + D Sbjct: 61 AKKVASKLKGKPEVSVFKNFGTAMIKYEDIELEFVGARKESYHEDSRKPVVEDGSLEDDQ 120 Query: 118 LRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRF 173 RRDFTINAL G ++D G+ DL ++ IK +D LR++R RF Sbjct: 121 KRRDFTINALAISLNEPTYGTLLDPFNGIQDLEDKIIKTPLAPGITYSDDPLRMMRAIRF 180 Query: 174 FAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + I+ L A + K +KI+S ERI E++K+L +K P ++ + Sbjct: 181 ATQL-DFKIEDISLNAITEHKDRIKIISKERIVDELHKILASKIPSLGFSLLHKTELLGY 239 Query: 234 IFLDVQEI----------SLDQLSQVIEAEQVFEWKIDS-LLRFIVLISWQDK------- 275 I ++ + D +E D+ LR+ L+ K Sbjct: 240 ILPELTALQGIEEIEGQRHKDNFWHTLEVVDNIALNTDNVWLRWAALLHDIGKAPTKRFD 299 Query: 276 ---------------KSILSMAKKFSLPREIRYF------LISFFNCNFNQKTLSIPEIK 314 K + + K+ +P + L+S ++ + ++ Sbjct: 300 KKIGWTFHSHEFIGSKMVYKLFKRLRMPLNDKMKFVQKMVLLSSRPIILSEDFATDSAVR 359 Query: 315 KLFYLYGDKVMIAKLKIFLALHYNNLTHQDT--------CFILQVLSDIIHWKKPLFPLT 366 +L + G+ + + N Q + + + H + P++ Sbjct: 360 RLIFDAGENIEDLMTLCEADITTKNPKKQKRYQNNFKLVRQKIVEVEERDHVRNFQPPIS 419 Query: 367 GDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 G+ +++ + + P K++G I K+ + + Sbjct: 420 GEQIMETFNLKPSKEIGIIKEAIKEAILEGEIPNEYDA 457 >gi|15618873|ref|NP_225159.1| Poly A polymerase [Chlamydophila pneumoniae CWL029] gi|4377290|gb|AAD19102.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029] Length = 430 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF I Sbjct: 42 SPHALSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNC----I 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYAD 130 + I K+ +++T RS + K + D LRRDFTIN L+ D Sbjct: 98 LVGKRFRLAHIRFSKQIIEVSTFRSGSTDEDVLITKDNLWGTPEEDVLRRDFTINGLFYD 157 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++ A Sbjct: 158 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I ++ L S R++ E+ K+L + N + + + +F + + +L++ Sbjct: 217 LIACRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPYMDKAF--RLNRA 274 Query: 250 IE 251 +E Sbjct: 275 LE 276 >gi|134096102|ref|YP_001101177.1| tRNA nucleotidyl transferase [Herminiimonas arsenicoxydans] gi|166233859|sp|A4G969|CCA_HERAR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|133740005|emb|CAL63056.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2', 3'-cyclic phosphodiesterase; Phosphatase] [Herminiimonas arsenicoxydans] Length = 414 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 135/319 (42%), Gaps = 37/319 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K IVGGAVRD L+ ++V+D D + P++++ K P + T + Sbjct: 2 KIYIVGGAVRDELLGVAVKDRDYVVVGATPEQMIAQNYTPVGKDFPVFLHPVTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y VF D + D +RRD T+NA+ D G++ID GG Sbjct: 57 ---EYALARTERKTAPGYKGFVFHTDAGVTLEEDLIRRDLTVNAMAKDADGRIIDPFGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKIL 200 DL + + + A ED +RILR RF A + + ++ +++ L+ ++ A + L Sbjct: 114 RDLEQKIFRHVSSA---FAEDPVRILRVARFAARFPQFSVAAETNALMQAMVAAGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER W E+ + L P + + G + + + LD L V + E+ + +I Sbjct: 171 VPERTWQELARGLMEVQPSRMFAVLRDCGALQRMLPE-----LDALWGVPQPEK-YHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++++ + + +LP + K ++ PE+ + + Sbjct: 225 DTGVHVMMVVDH-------AAQQNLALPIRCAALF------HDLGKGVTPPEMWPRHHGH 271 Query: 321 GDKVMIAKLKIFLALHYNN 339 + + L N Sbjct: 272 EMQSAKLVETVCQRLKIPN 290 >gi|167629951|ref|YP_001680450.1| tRNA nucleotidyltransferase/poly(a) polymerase [Heliobacterium modesticaldum Ice1] gi|167592691|gb|ABZ84439.1| tRNA nucleotidyltransferase/poly(a) polymerase [Heliobacterium modesticaldum Ice1] Length = 891 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 81/413 (19%), Positives = 164/413 (39%), Gaps = 22/413 (5%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 ++ L + + +VGG VRD L+ ++ DID+ ++ + T Sbjct: 473 DVGRLADGEGVQVYVVGGFVRDLLLGVNNLDIDLVVEGDGICFATELARFLKGTLRTHEK 532 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ---- 132 +GT I + D+ T R + V D + D RRDFTINAL Sbjct: 533 FGTAVIRWGDQKIDVATARREFYQYPAALPQVEASDLRQDLYRRDFTINALAIRLNRERF 592 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASI 191 G+++D+ G+ DL ++ + + +ED RILR RF YG + G Sbjct: 593 GELVDFFQGVKDLEQGLVRVLYN--LSFVEDPTRILRAIRFEQRYGFTIEPQTMGFAREA 650 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL--------DVQEISL 243 A++ ++ LS ER+ E+ +L +NP A+ + G+++ + +V+ ++ Sbjct: 651 IARQMIRELSYERMVDELILILSEENPAPALRRLTELGLWEYLLPGLVWTPWVEVEVSAV 710 Query: 244 DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC-- 301 + + + + + ++ F +L + + + + L + +R L Sbjct: 711 PSMLKALAEAGLPVPQRPWVVYFYILARHLSMEGVCFVNDHYPLKQVMRDDLFKLHKEGK 770 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + NQ ++ + ++ + + + DT + + I + Sbjct: 771 DTNQALMNWLRGDDPLSRL-ESILRDWSEEAILALRAGFSLPDTVRLFEAWRRIRETRPC 829 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 LTG+D+ IPPG IL ++E ++ + + +R+L+ Sbjct: 830 ---LTGNDLKALKIPPGPIYARILNRLRRERLDGRLTDAGAE-RDFVRRLLQE 878 >gi|160872708|ref|ZP_02062840.1| multifunctional CCA protein [Rickettsiella grylli] gi|159121507|gb|EDP46845.1| multifunctional CCA protein [Rickettsiella grylli] Length = 399 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 147/401 (36%), Gaps = 57/401 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ +++ D + P +++ + K P + T + Sbjct: 2 EIYLVGGAVRDQLLGFPIKERDYVVVGASPAEMLKQGFRLIGKDFPVFLHPQTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D RRD TINAL G++ID G Sbjct: 57 ---EYALARTERKIGPGYKGFSCYAAPDVTLEEDLKRRDLTINALAQTNNGEIIDPFQGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ N+ ++ + A ED +RILR RF A + ++ L+ + + + Sbjct: 114 KDIENKLLRHVSPA---FSEDPVRILRVARFMARFSSFGFRVAKETMALMKMMVSMGEVH 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQL 246 L ER+W E + L +P I + + G +F ++ E+ L Sbjct: 171 ALVPERVWQEFSIALTEPSPQAFIKTLEDCGALAVLFPELYELHTHDASIKVHSQQLSPP 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-----------KSILSMAKKFSLPREIRYFL 295 + E+ D +RF L+ K + I S+ +++ +P Sbjct: 231 HYLSVLEKAVLLTSDPEVRFAALLCDLGKGVANEETQKGVQKIRSLCQRYRIPHAYASLA 290 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLY-------GDKVMIAKLKIFLA--LHYNNLTHQDTC 346 + + E L++L + L + A Y+ L H+ Sbjct: 291 MMAAAYHLLCHRALALEASSLYHLLEKTNALKQSSCLDQFLLVCEADFRAYSGLDHRVYL 350 Query: 347 FILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 +VL+ + KK ++ ++ K G+ G +G L Sbjct: 351 QRERVLAAVEIVKK----ISASELKKSGLM-GAALGKKLRE 386 >gi|258405470|ref|YP_003198212.1| cyclic nucleotide-binding protein [Desulfohalobium retbaense DSM 5692] gi|257797697|gb|ACV68634.1| cyclic nucleotide-binding protein [Desulfohalobium retbaense DSM 5692] Length = 902 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 82/433 (18%), Positives = 161/433 (37%), Gaps = 35/433 (8%) Query: 7 HKWFHDSDLINILSLLNKGEDKS-------CIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 H+S ++++L + D + VGG VRD L++ D+D+ Sbjct: 467 RTLLHNSLPQEVVAMLTQAGDLARDLGYHVYAVGGFVRDILLHRRNLDVDLVVEGDGIYF 526 Query: 60 MRIFSKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 R + + + T II + D+ T R + V K D Sbjct: 527 ARRLALDLGGRVRAHKKFKTAVIILPDGQRIDVATARLEYYEHPAALPTVELSTVKMDLS 586 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFT+NAL G+++D+ GG D++ +TI+ + +ED RILR RF Sbjct: 587 RRDFTVNALAVQLDPEQFGRLVDFFGGQKDIKEKTIRVMH--SLSFVEDPTRILRAVRFE 644 Query: 175 AHYGE-KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + ++ L+ + + + LS R++ E+ +L PL + + + I + Sbjct: 645 QRFHFQLGGQTERLIKNAQRLNMMHKLSGSRVFGELRLILNESKPLACLQRLESFNILES 704 Query: 234 IFLDVQEISLDQLSQVIEAEQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKK 284 I + ++ ++ + E E+V W L+ F+ L S ++ + +A + Sbjct: 705 IHP-LLKLDGNRQRILEETERVLGWYRLLYLDPEPRPWLVYFLGLCSGYNQSQVHLLAHR 763 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG---DKVMIAKLKIFLALHYNNLT 341 + P++ F+ + ++ +G D + + + Y Sbjct: 764 LAFPQKRENFIQQLR----QDISQCREQLGSWMQNHGQVSDLFFLLEPLPLEGVLYLMAR 819 Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 + + ++ +TG D+ + G+P G IL ++ Sbjct: 820 GYKDPVRRHLSLYLTQYRGQEPDITGKDLQQMGLPSGPLYRTILQRVLAAKLDGKAPDRP 879 Query: 402 EDLHH---LLRKL 411 L L R+L Sbjct: 880 AQLEMAAGLARQL 892 >gi|329896232|ref|ZP_08271410.1| Poly(A) polymerase [gamma proteobacterium IMCC3088] gi|328921903|gb|EGG29270.1| Poly(A) polymerase [gamma proteobacterium IMCC3088] Length = 424 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 114/253 (45%), Gaps = 22/253 (8%) Query: 1 MVSIVQHKW----FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILP 56 M +I+ + H S +++ LN ++ +VGGA+RD L+ + +D D+AT P Sbjct: 2 MPTIIDRNFDINKLHHS-AVSVALRLNDKGYEAYVVGGAIRDMLLGKTPKDFDVATNATP 60 Query: 57 DRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-----------DGRYA 105 ++V +F +R + + + + ++TT R G Sbjct: 61 EQVHALFRGSRI----VGRRFQIVHVRMGRDIIEVTTFRGHHSESDNKNTAKQGRSGVLL 116 Query: 106 KVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDY 164 + + D++RRD T+NALY D + VIDY GL D+ R +K IGD R ED Sbjct: 117 RDNVFGTLEQDAIRRDLTVNALYYDPVEDTVIDYTEGLRDIAARRLKIIGDPETRYREDP 176 Query: 165 LRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 +R+LR RF A G +IDS A L + + R++ E K A + Sbjct: 177 VRMLRVLRFQAKLG-FDIDSATNQALNDCAPLLAQIPAARLFDEFLKGFMAGHAKPFSEI 235 Query: 225 MYNGGIFKEIFLD 237 + +++E+F D Sbjct: 236 LLQTPVWQELFPD 248 >gi|325122895|gb|ADY82418.1| tRNA nucleotidyl transferase [Acinetobacter calcoaceticus PHEA-2] Length = 412 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 78/405 (19%), Positives = 152/405 (37%), Gaps = 58/405 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDFLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ GK+ D GG Sbjct: 57 ---EYALARTERKSGKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL N+T++ + +A ED LR+LR RF A Y ++ L+ ++ L Sbjct: 114 TDLENKTLRHVSEA---FAEDPLRVLRVARFAARYSSYGFQIAPETMQLMQTMAESGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L + + + G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALLEDHADVYFQTLRDCGALKYLFPEIDALFGVPQRPEYHPEVDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPANELPRHIMHEERGVKPVTELCERLKV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + R +S + +L + +L +++ F+ + + Sbjct: 291 PTQTRQLALSVCKEHLKCHQIMSLKPGTVWRLLQRLDVLRRPERVEAFVQACECDAKGRL 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 ++ + + + D+ + G ++G +L+ Sbjct: 351 GLEDRPYPQAQYMLDAMQIVRSIKVQDLPEN--IKGAEIGEMLIQ 393 >gi|303253062|ref|ZP_07339213.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648094|gb|EFL78299.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 395 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 53/362 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+NL V+D D + P++++ + P + T + Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R + +G + D +RRD TINA+ D G++ D GG Sbjct: 57 ---EYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLK 198 DL NR ++ I A ED LR+LR RF A + G K ++ L+ + A L Sbjct: 114 QDLANRLLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K NP + G +F + D+L V + EQ Sbjct: 171 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPE-----FDRLFGVPQPEQ-HHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +IDS + ++ ++ AK+ + E L+ C+ K L+ +I Y Sbjct: 225 EIDSGVHTLL---------VIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHY 275 Query: 319 LYG------DKVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKK 360 + + + +LK+ + H + + +L+V + + W+K Sbjct: 276 GHEVKGVKPARELSNRLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRK 335 Query: 361 PL 362 P Sbjct: 336 PQ 337 >gi|37197496|dbj|BAC93335.1| tRNA nucleotidyltransferase [Vibrio vulnificus YJ016] Length = 436 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 82/403 (20%), Positives = 152/403 (37%), Gaps = 61/403 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + V D D + ++++ K P + T + Sbjct: 31 EVYLVGGAVRDKLLGIPVYDQDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKTKQ----- 85 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F+ D + D LRRD TINA+ D QG + D GG Sbjct: 86 ---EYALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGVLYDPYGGQ 142 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL++R ++ + +A +ED LR+LR RF A ++ L+ SI A L Sbjct: 143 QDLQDRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELS 199 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L++ER+W E +K L P + + G + ++ + + Q + Sbjct: 200 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 259 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ AEQ + +++RF + K K I + ++ + Sbjct: 260 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKGVTPPSEWPSHKMHCHTGLKLIKQLCERVRV 319 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-------KVMIAKLKIFLALHYNNL 340 P E R + + N + + + + ++ + + L A H Sbjct: 320 PNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAERLNDILLCCQADHAGRQ 379 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 QD + + + + V++ G G + + Sbjct: 380 GLQDHPYPQAERIQLAYQAALSVEVQS--VIQDGFK-GPAIRD 419 >gi|33242334|ref|NP_877275.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183] gi|33236845|gb|AAP98932.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183] gi|269302757|gb|ACZ32857.1| poly(A) polymerase [Chlamydophila pneumoniae LPCoLN] Length = 416 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K + IVGG +RD L+N + +D DI+T+ P+ + IF I Sbjct: 28 SPHALSVIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNC----I 83 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYAD 130 + I K+ +++T RS + K + D LRRDFTIN L+ D Sbjct: 84 LVGKRFRLAHIRFSKQIIEVSTFRSGSTDEDVLITKDNLWGTPEEDVLRRDFTINGLFYD 143 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 ++IDY GG+NDLRNR ++ IGD R +D +R+LR + + +++ A Sbjct: 144 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSR-SPFTVETQTQEA 202 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 I ++ L S R++ E+ K+L + N + + + +F + + +L++ Sbjct: 203 LIACRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPYMDKAF--RLNRA 260 Query: 250 IE 251 +E Sbjct: 261 LE 262 >gi|308179175|ref|YP_003918581.1| tRNA adenylyltransferase [Arthrobacter arilaitensis Re117] gi|307746638|emb|CBT77610.1| putative tRNA adenylyltransferase [Arthrobacter arilaitensis Re117] Length = 483 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 78/469 (16%), Positives = 165/469 (35%), Gaps = 62/469 (13%) Query: 1 MVSIVQHKWFHD---SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPD 57 M ++ S + ++ + + +VGG VRD + D+D T+ P+ Sbjct: 1 MHALPSPDALRQILPSVIFDLADRFVRAGHELSLVGGPVRDLYLGRVSPDLDFTTSARPE 60 Query: 58 RVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKAD 116 +++ S + +GTI + ++TT R+D + R V F + D Sbjct: 61 ETIKVISGWADNIWDVGREFGTIAFKKGEHTLEVTTYRADAYDKESRKPIVAFGDNLHDD 120 Query: 117 SLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 RRDFT+N++ Q +++D G++ L + +I+ G +D LR++R RF + Sbjct: 121 LFRRDFTMNSMALRLPQLELVDPFDGVSSLEDGSIRTPGAPDISFSDDPLRMMRAARFAS 180 Query: 176 HYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF 235 + + + A + + I+S+ER+ E+ KL+ +P I + G+ ++ Sbjct: 181 QL-KIEVSPEVRKAMSEMTDRIDIISAERVRDELIKLINGADPRAGINLLVESGLADKVL 239 Query: 236 LDVQEISLD----------------QLSQVIEAE---QVFEWKIDSLLRFIVLISWQDKK 276 +V + L+ L Q I E + +LRF L+ K Sbjct: 240 PEVSALRLEIDEHHRHKDVYQHSLTVLEQAIALETDDDGPVPGPNFILRFAALMHDIGKP 299 Query: 277 SILSMA----------------------KKFSLPREIRYFLISFFNCNFN-----QKTLS 309 + + ++ + + + + Sbjct: 300 ATRKFEPSGAVSFRHHDMVGSKLTKARMRALRFDKDTTKAVARLVELHMRFYGYGEAGWT 359 Query: 310 IPEIKK--------LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 +++ L +L+ + + D + +++ + Sbjct: 360 DSAVRRYVTDAGDLLEHLHRLTRSDVTTRNRKKADRLGFAYDDLEARIAKIAEQEELQSI 419 Query: 362 LFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L G+ +++ I P K VG + ++ L +E LR Sbjct: 420 RPDLDGEQIMRLLDIKPSKAVGRAYKFLLELRLDEG-PLGEEIATERLR 467 >gi|148269360|ref|YP_001243820.1| CBS domain-containing protein [Thermotoga petrophila RKU-1] gi|147734904|gb|ABQ46244.1| CBS domain containing protein [Thermotoga petrophila RKU-1] Length = 863 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 91/421 (21%), Positives = 169/421 (40%), Gaps = 27/421 (6%) Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + DIDI + Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIENLDIDIVVEGNALEFAEYAKRFL 510 Query: 68 YKVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + T + + DI T R + V K D RRDFTINA Sbjct: 511 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINA 570 Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + G +ID+ GG DL+ I+ + ++D RILR RF + + Sbjct: 571 MAIKLNSKDFGLLIDFFGGYRDLKEGVIRVLH--TLSFVDDPTRILRAVRFEQRFDFRIE 628 Query: 183 D-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----- 236 + ++ L+ + L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 629 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 688 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLL-RFIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + ++ L + I + ++D V + + D +S + ++SL R + + Sbjct: 689 PSMDGKMENLFRNIPWVEENFGEVDKFYAALHVFLEFYDDESWKEVRDRYSLRRNLINEI 748 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + + ++Y ++ I L Y L+ + L I Sbjct: 749 RHVEKSAPALLEMLSERV-PVSFVYPLVKGVSSETICHFLAY--LSGEKEELFKSYLLKI 805 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + K + G+ +++ GI GK +G +L ++ + +E +L++++AS Sbjct: 806 KNTKLEK--INGEYLIRKGITSGKIIGEVLEKILMRKLDGDTRDEEE----ILKEVLASL 859 Query: 416 Q 416 + Sbjct: 860 E 860 >gi|187922750|ref|YP_001894392.1| poly(A) polymerase [Burkholderia phytofirmans PsJN] gi|187713944|gb|ACD15168.1| poly(A) polymerase [Burkholderia phytofirmans PsJN] Length = 529 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 31/246 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 76 QALISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRAR 135 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ + +T R+ D T G Sbjct: 136 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAPPARRLKRDELDRRTHAVDASG 191 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 192 RVLRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYR 251 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A + I+ + + + R++ E+ KL+ + + L Sbjct: 252 EDPVRMLRVVRFAAKL-DFEIEDSTREPIANMADLINNVPAARLFDEMLKLMLSGHALAC 310 Query: 222 IVHMYN 227 + + Sbjct: 311 LKRLRQ 316 >gi|226941212|ref|YP_002796286.1| Cca [Laribacter hongkongensis HLHK9] gi|254813695|sp|C1DAG2|CCA_LARHH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226716139|gb|ACO75277.1| Cca [Laribacter hongkongensis HLHK9] Length = 405 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 81/354 (22%), Positives = 141/354 (39%), Gaps = 27/354 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ IVGGAVRD L+ L V+D D T P+ + R + + P + T + Sbjct: 2 KTYIVGGAVRDRLLGLPVRDRDWVVTGETPESMRRRGFRPVGRDFPVFLHPDTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F +AD RRD TINA+ D+ G+++D G Sbjct: 57 ---EYALARTERKTARGYHGFSFHAAPDVTLEADLARRDLTINAMAEDENGELVDPFNGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGLVASIKAKKGLKILS 201 DL ++ +G+A +ED +RILR RF A +G D+ L+ + + L Sbjct: 114 QDLAAGILRHVGEA---FVEDPVRILRIARFAARFGFSIAEDTQNLMRFMVDDGEVDHLV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E++K L P + + G I +V D L V + + ++D Sbjct: 171 PERVWQELSKGLMEAQPSRFFTVLRDCGALARILPEV-----DALWGVPQRAD-YHPEVD 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKF-SLPREIRYFL--ISFFNCNFNQKTLSIPEIKKLFY 318 + + +L+ Q + L +A +F +L ++ L + + + L Sbjct: 225 TGVH-AMLVLDQSARDGLGLAARFAALCHDLGKALTPAELLPRHSGHEGRGEAPTRALCE 283 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 L + ++++ VL + P DD++ Sbjct: 284 RLRVPAECRDLALLTVSFHSHIHRIRELRPDTVLRLLRECDALRRPARFDDLLA 337 >gi|126665733|ref|ZP_01736714.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Marinobacter sp. ELB17] gi|126629667|gb|EBA00284.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Marinobacter sp. ELB17] Length = 386 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 149/387 (38%), Gaps = 34/387 (8%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L V+D D + P+ ++ + P + T + Sbjct: 8 YLVGGAVRDQLLGLPVKDRDWVVVGATPETMLTQGFRQVGADFPVFLHPHTHE------- 60 Query: 89 FDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ Y + D RRD T+NA+ + G++ID GG D Sbjct: 61 -EYALARTERKQGRGYHGFTVYSAPDVTLEEDLKRRDLTVNAMAQAEGGEIIDPFGGQQD 119 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK----NIDSDGLVASIKAKKGLKIL 200 L++R ++ + +A ED LRILR RF A + + + + L+ ++ ++ L Sbjct: 120 LQDRLLRHVSEA---FAEDPLRILRTARFAARFAPQGFAVHPHTLQLMQAMTDAGEVRHL 176 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD--VQEISLDQLSQVIEAEQVFEW 258 ER+W E+ + L +P+ +++ G E+ + Q + L+ + + Q Sbjct: 177 VPERVWQELQRALHETSPVTFFEVLHSCGALIELLPEFAAQPVRQQALNALQQLHQNL-P 235 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPR---EIRYFLISFFNCNFNQKTLSIPEIKK 315 ++ R L+ + P+ E+ + + T S E+ + Sbjct: 236 GANTAQRIAALLLPLSSAQANNRVTLLKAPKVCQELATLACTLRCSSCMNITHSQNELAE 295 Query: 316 LFYLYGDKV----MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG---D 368 + +L+ L L L Q+ + + + L G Sbjct: 296 QLLETLNAADAWRRPERLQEALQLLRVTLPLQNGLDLPLQQIGLQQLAESLQAAAGVHAK 355 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINS 395 ++ G G ++G + C+ E ++S Sbjct: 356 TLLAQGYR-GPELGQAMNQCRLEAVHS 381 >gi|261493336|ref|ZP_05989862.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496601|ref|ZP_05992981.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307804|gb|EEY09127.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310980|gb|EEY12157.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 443 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 105/241 (43%), Gaps = 18/241 (7%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF-SKTRYKVI 71 + I+I+ L ++ IVGG +RD L+ +D DIAT P+ + RIF + R Sbjct: 22 KNAISIVDKLQIAGYEAYIVGGCIRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRL--- 78 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITD-----------GRYAKVVFTRDWKADSLRR 120 + I+ ++ F++ T R+ + G + + D+ RR Sbjct: 79 -IGRRFRLAHIVYGREIFEVATFRAGHESHRNDKISKVSDEGMLLRDNVYGTLRDDAERR 137 Query: 121 DFTINALYADQQGKVI-DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 DFT+NALY D + +I D+ G+ DLR + IG+ R ED +R+LR RF A Sbjct: 138 DFTVNALYYDIKRNLIFDFFNGIEDLRAGKLSLIGEPAIRYQEDPVRMLRAVRFMAKLDM 197 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 +D L + + R++ E KLL+ L + +++ +F + Sbjct: 198 F-LDKATASPIRDMAALLTNIPAARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLP 256 Query: 240 E 240 Sbjct: 257 A 257 >gi|260549768|ref|ZP_05823985.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter sp. RUH2624] gi|260407285|gb|EEX00761.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter sp. RUH2624] Length = 412 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 81/424 (19%), Positives = 159/424 (37%), Gaps = 59/424 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDFLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPQTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ GK+ D GG Sbjct: 57 ---EYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 +DL N+ ++ + +A ED LR+LR RF A Y I + L+ ++ L Sbjct: 114 SDLENKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMAESGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L + + + G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALMETHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGV 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPADELPRHIMHEERGIKPVTQLCERLRV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + + +S + +L + +L +++ F+ + + Sbjct: 291 PTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPERVEAFVQACECDAKGRL 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + + + + D+ + G ++G +L+ + E + F+ + Sbjct: 351 GLEDRPYPQAQYMREAMQIVRSIKVQDLPEN--IKGAEIGEMLIQYRIEALA-EFKNQHQ 407 Query: 403 DLHH 406 L H Sbjct: 408 SLSH 411 >gi|325983710|ref|YP_004296112.1| poly(A) polymerase [Nitrosomonas sp. AL212] gi|325533229|gb|ADZ27950.1| poly(A) polymerase [Nitrosomonas sp. AL212] Length = 462 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 19/238 (7%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + I L + + +VGGAVRD L+ L +D D+AT P+ V +IF ++R Sbjct: 43 LKIALNLQQAGFSAYLVGGAVRDLLLGLVPKDFDVATNATPEEVHKIFRRSRI----IGR 98 Query: 76 SYGTIKIICRKKYFDITTLRSDL-------------ITDGRYAKVVFTRDWKADSLRRDF 122 + + ++C + +++T R GR + D++RRDF Sbjct: 99 RFRLVHVMCGAETVEVSTFRGPSPDEDEDPAFKQSIDQHGRLLHDNVFGSQEEDAMRRDF 158 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 T+NAL+ D + +++DY+ G D++ R ++ IGD R ED +R+LR R + Sbjct: 159 TVNALFYDPVKEEILDYLHGYEDIKARRMRIIGDPVQRFREDPIRLLRAVRLATKL-DMQ 217 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ID+ L+ + R++ E+ KLL + + L +V + G+ + + Sbjct: 218 IDAQTAKPIGDLAPLLQNVPPSRLFDEMLKLLLSGHALACVVELRMRGLHHGLLPMLD 275 >gi|292490381|ref|YP_003525820.1| polynucleotide adenylyltransferase region [Nitrosococcus halophilus Nc4] gi|291578976|gb|ADE13433.1| Polynucleotide adenylyltransferase region [Nitrosococcus halophilus Nc4] Length = 403 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 138/343 (40%), Gaps = 37/343 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V++ D + P ++ + K P + T + Sbjct: 2 EIYLVGGAVRDKLLGRPVKERDYVVVGATPASLLAQGYRPVGKDFPVFLHPQTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D RRD TINA+ +G + D GG Sbjct: 57 ---EYALARTERKTGPGYKGFEVYAAPDVTLEEDLQRRDLTINAIAESPEGALFDPFGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL ++ + A +ED +RILR RF A + + ++ L+ ++ A + L Sbjct: 114 QDLERGILRHVSPA---FVEDPVRILRVARFAARFDFEVAPETMALMQAMVAAGEVDHLV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E+ + L +P + G IF ++ ++L V + ++ + +ID Sbjct: 171 PERVWKELEQALAESHPRRFFEILRACGALARIFPEI-----ERLFGVPQPKR-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + + +L MA + S ++R+ + + K ++P +G Sbjct: 225 TGIHTL---------KVLDMAARLSQDTQVRFAAL----IHDLGKGETLPSEWPHHRGHG 271 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 ++ L + L +Q+ + D +H + L P Sbjct: 272 ERGAALVLTLCQRLRVPK-AYQELAVHVARYHDQVHRAQELRP 313 >gi|77918901|ref|YP_356716.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter carbinolicus DSM 2380] gi|77544984|gb|ABA88546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Pelobacter carbinolicus DSM 2380] Length = 888 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 89/430 (20%), Positives = 155/430 (36%), Gaps = 32/430 (7%) Query: 7 HKWFHDSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRI 62 DS L LS + D +VGG VRD L+ D+DI Sbjct: 458 RNQLRDS-LQKTLSTIGAVGDALGRSVFVVGGFVRDLLLRQENFDVDIVVEGDGIAFAEE 516 Query: 63 FSKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 +++ + + T +I D+ + R++ + V K D RRD Sbjct: 517 YARRYDCRVRAHKKFATAVLIFADGFKVDVASARTEYYLEPGALPTVENASIKLDLYRRD 576 Query: 122 FTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 FTIN L G+++DY GG NDLR + I+ + + +ED R+ R RF Sbjct: 577 FTINTLAIALNGPHFGELLDYFGGQNDLRGKAIRVLHN--LSFVEDPTRMFRAIRFEQRL 634 Query: 178 GE-KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G + L+ S L +S R+++E+ + +PL A+ + G+ I Sbjct: 635 GFQMGRHTVHLLKSAVRMGFLDKISGPRVFNELVLIFRESDPLPAMRRLDELGLLAFIHP 694 Query: 237 DVQEISL------------DQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + L D + E+ WK + F+ L+S D + + ++ Sbjct: 695 TLSVRHLSDGTFAAAKQAVDWYELLYTGERCQRWK----VFFLCLLSDLDHGEVQQIVQR 750 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIF--LALHYNNLTH 342 ++P + F S + + Y + D + A LK AL Y Sbjct: 751 LAMPPQCEEFFGSERDAATRILNQIEWRSMQS-YRWRDSDIHALLKDLPVEALLYGMAIT 809 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + + I H + L G D+ G+ PG I ++ ++ Sbjct: 810 EHEEARRTISHFITHLRHVKCLLRGHDLQSLGLAPGPIYREIFDALLDVRLDGQVVTRED 869 Query: 403 DLHHLLRKLI 412 +L + + + Sbjct: 870 ELQFVTNRYV 879 >gi|146329312|ref|YP_001209046.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A] gi|146232782|gb|ABQ13760.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A] Length = 430 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D I I L++ ++ +VGG +RD+L+ +D DIAT P+ + +F R Sbjct: 25 DRRAIAICRQLHEAGYEAYLVGGCLRDTLLQQPPKDFDIATNARPEEIAALFRNCRL--- 81 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT------DGRYAKVVFTRDWKADSLRRDFTIN 125 + + + ++ T R+ DG + + D LRRDF IN Sbjct: 82 -IGRRFRLAHLHYGRDIIEVATFRASADEQVKTDADGHVLEDNHYGTMEEDVLRRDFIIN 140 Query: 126 ALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 +LY D Q G +IDY+ L D+R R I+ IG R +ED +R+LR RF A +++ Sbjct: 141 SLYYDVQTGVLIDYLDALADIRARQIRLIGTPSARYIEDPVRMLRAARFAAKL-SMPLEA 199 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 A ++ L+ + + R++ E+ KL + + + + +F +F DV I Sbjct: 200 QTQQAIASCRQELRAVPAARLFDEVQKLFMSGYGEKSYEILRSFELFAMLFPDVDRI 256 >gi|170288018|ref|YP_001738256.1| CBS domain-containing protein [Thermotoga sp. RQ2] gi|170175521|gb|ACB08573.1| CBS domain containing protein [Thermotoga sp. RQ2] Length = 863 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 90/416 (21%), Positives = 165/416 (39%), Gaps = 23/416 (5%) Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + D+DI + Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDVDIVVEGNALEFAEYAKRFL 510 Query: 68 YKVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + T + + DI T R + V K D RRDFTINA Sbjct: 511 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEISTIKKDLYRRDFTINA 570 Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + G +ID+ GG DL+ I+ + ++D RILR RF + + Sbjct: 571 MAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLH--TLSFVDDPTRILRAIRFEQRFDFRIE 628 Query: 183 D-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----- 236 + ++ L+ + L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 629 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 688 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLR-FIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + ++ L + I + ++D V + + D +S + ++SL R++ + Sbjct: 689 PSMDGKMENLFRNIPWVEENFGEVDKFYAVLHVFLEFYDDESWKEVRDRYSLRRDLINEI 748 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + ++Y ++ I L Y L+ + L I Sbjct: 749 RHVEKSAPALLEMLSERVPAS-FVYPLVKGVSNETICHFLAY--LSGEKEELFKSYLLKI 805 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + K + G+ +++ GI GK +G +L + ++ + +E L +L L Sbjct: 806 KNTKLEK--INGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVLASL 859 >gi|281411943|ref|YP_003346022.1| Polynucleotide adenylyltransferase region [Thermotoga naphthophila RKU-10] gi|281373046|gb|ADA66608.1| Polynucleotide adenylyltransferase region [Thermotoga naphthophila RKU-10] Length = 863 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 90/416 (21%), Positives = 165/416 (39%), Gaps = 23/416 (5%) Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + D+DI + Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDVDIVVEGNALEFAEYAKRFL 510 Query: 68 YKVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + T + + DI T R + V K D RRDFTINA Sbjct: 511 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINA 570 Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + G +ID+ GG DL+ I+ + ++D RILR RF + + Sbjct: 571 MAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLH--TLSFVDDPTRILRAIRFEQRFDFRIE 628 Query: 183 D-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----- 236 + ++ L+ + L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 629 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 688 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLR-FIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + ++ L + I + ++D V + + D +S + ++SL R++ + Sbjct: 689 PSMDGKMENLFRNIPWVEENFGEVDKFYAVLHVFLEFYDDESWKEVRDRYSLRRDLINEI 748 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + ++Y ++ I L Y L+ + L I Sbjct: 749 RHVEKSAPALLEMLSERVPAS-FVYPLVKGVSNETICHFLAY--LSGEKEELFKSYLLKI 805 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + K + G+ +++ GI GK +G +L + ++ + +E L +L L Sbjct: 806 KNTKLEK--INGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVLASL 859 >gi|120602478|ref|YP_966878.1| polynucleotide adenylyltransferase region [Desulfovibrio vulgaris DP4] gi|120562707|gb|ABM28451.1| Polynucleotide adenylyltransferase region [Desulfovibrio vulgaris DP4] Length = 904 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 82/402 (20%), Positives = 150/402 (37%), Gaps = 23/402 (5%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 + VGG VRD L++ D+D+ R+F+ + + T + Sbjct: 482 ERLGVSVYAVGGFVRDLLLDRPNYDLDLVIEGDGVAFARVFAAEVGGRLREHAKFKTALV 541 Query: 83 ICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----G 133 I + D+ T R + V K D RRDFTINAL G Sbjct: 542 IFTDENGAEQRVDVATARLEYYEYPAALPTVELSSIKMDLFRRDFTINALAVQLDGAQFG 601 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIK 192 +++D+ G D++++ I+ + +ED RILR RF Y + L+ + Sbjct: 602 RLVDFFGSQRDMKDKGIRVLH--SLSFVEDPTRILRAVRFAVRYDFSIGPQTQRLIKNAL 659 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + LS RI+ E+ +LE + P+ + + + G+ + I + +++ + + + Sbjct: 660 GLGLMGRLSGPRIFHELRLILEEQAPVECLARLEHFGVLEAIHP-LFKLTPSRTNLLEST 718 Query: 253 EQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNF 303 EQV W L+ + L K S+A + +LP R +S Sbjct: 719 EQVLNWYRLLYLDEEPQRWLIYLLALCLNMKYKESASIADRLALPPSARNAFLSTRETLR 778 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 + +++ L ++ L + LH + + V + + Sbjct: 779 STGPKVEKWMREEGPLSELYALLKPLALEGVLHMMARSKSEDLR-RHVSQFLTRLQHEKL 837 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 + GDD+ G+PPG G +L H ++ L Sbjct: 838 DINGDDLRAMGLPPGPAYGRVLQHVLAAKLDGHAPTRTVQLE 879 >gi|15643478|ref|NP_228524.1| tRNA nucleotidyl transferase-related protein [Thermotoga maritima MSB8] gi|4981239|gb|AAD35797.1|AE001742_12 tRNA nucleotidyl transferase-related protein [Thermotoga maritima MSB8] Length = 863 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 91/416 (21%), Positives = 164/416 (39%), Gaps = 23/416 (5%) Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + DIDI + Sbjct: 451 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFL 510 Query: 68 YKVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + T + + DI T R + V K D RRDFTINA Sbjct: 511 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINA 570 Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + G +ID+ GG DL+ I+ + ++D RILR RF + + Sbjct: 571 MAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLH--TLSFVDDPTRILRAIRFEQRFDFRIE 628 Query: 183 D-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----- 236 + ++ L+ + L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 629 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 688 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLR-FIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + ++ L + I + ++D V + + D +S + ++SL R + + Sbjct: 689 PSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEI 748 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + ++Y ++ I L Y L+ + L I Sbjct: 749 RHVEKSAPALLEMLSERVPAS-FVYPLVKGVSNETICHFLAY--LSGEKEGLFKSYLLKI 805 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + K + G+ +++ GI GK +G +L + ++ + +E L +L L Sbjct: 806 KNTKLEK--INGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVLASL 859 >gi|331006394|ref|ZP_08329703.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC1989] gi|330419818|gb|EGG94175.1| tRNA nucleotidyltransferase [gamma proteobacterium IMCC1989] Length = 383 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 155/399 (38%), Gaps = 36/399 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGA+RD L+N + D + P+ +++ K P + T + Sbjct: 2 KTYLVGGAIRDQLLNFPYHEKDWVVVGSSPEEMIKQGYTPVGKDFPVFLHPSTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D RRD TINA+ G +ID GG Sbjct: 57 ---EYALARTERKTAPGYKGFTFHTDKSVTLEDDLQRRDLTINAIAQSDDGTLIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ R ++ + A ED +R+LR RF A Y ++ L+ ++ A+ + Sbjct: 114 QDIIGRCLRHVSSA---FSEDPVRVLRVARFAARYHHLGFSIAKETITLMQNMVAQGETQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--SLDQLSQVIEAEQVF 256 L +ER+W E+ K L ++P + ++ EI +L L+ + Sbjct: 171 HLVAERVWQEMQKALTEQHPEIFFTCLEKCHALSDLLPKTDEILKTLSPLNTTLLT-NTA 229 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN---FNQKTLSIPEI 313 + D L+RF L + I ++ + ++P E R I + + ++ Sbjct: 230 KKSGDPLIRFSALCYPFNLDDIDALCQHLTVPNEYRELAILTKKHDSIYLKPNDWNSEKL 289 Query: 314 KKLFYLYGDKVMIAKLKIFL-----ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 F + + L L+ N+ + T +L+ + Sbjct: 290 NAFFQQCDTLRKPERFQQLLDTWDSMLNKNSEQKESTDTTAHLLAAAEAYNNVDHQA--- 346 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 ++K G ++GN + ++E + + QE L +L Sbjct: 347 -LIKQGFKK-AELGNAIKQKRKEQVGLWLKTHQEHLRNL 383 >gi|108805591|ref|YP_645528.1| polynucleotide adenylyltransferase region [Rubrobacter xylanophilus DSM 9941] gi|108766834|gb|ABG05716.1| Polynucleotide adenylyltransferase region [Rubrobacter xylanophilus DSM 9941] Length = 510 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 93/489 (19%), Positives = 176/489 (35%), Gaps = 90/489 (18%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + + +VGG VRD+L +++D AT P + R+ + Sbjct: 14 LARLAERFRDSGRELYLVGGYVRDALSGRRGEEVDAATDARPPEIKRLLRPHAGYMWDVG 73 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYADQ-Q 132 +GTI ++TT RSD +G R+ +V F D RRDFTINA+ AD Sbjct: 74 ERFGTIGAAVDGYRVEVTTYRSDRYAEGDRHPEVSFGESLMGDLARRDFTINAVAADALS 133 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG----EKNIDSDGLV 188 G +ID G DL I+ +GD R+ ED LR+LR RF A + +D Sbjct: 134 GGIIDPFEGRRDLELGIIRPVGDPLERMREDPLRMLRAVRFVATLSTPEKPFEMTADLER 193 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 A + + L+ +S+ERI E +++L + NP + + G+ + + + E + Sbjct: 194 AIRENARWLESISAERIREEFDRILLSPNPALGLRALVRLGLMRYVVPEFMETVDVRQDT 253 Query: 249 VIEAEQVFEW--------KIDSLLRFIVLISWQDKKSIL--------------------- 279 + + VFE + + LR K L Sbjct: 254 ELHHKDVFEHTLIVVENVEPEPTLRRAAFFHDIGKPRTLVYEHRCTYCGARSVRREAGEG 313 Query: 280 ----------------------------SMAKKFSLPREIRYFLISFFNCNFNQKTLSI- 310 ++ + ++ + + + ++ Sbjct: 314 ECEECGGRTVARKIHFYGHENVGSGIARRAMRRLAYSKDEVDAVAHLVREHMRPMSYAMG 373 Query: 311 ----------PEIKKLFYLYGDKVMIAKLKIFLALHYNNLT-------------HQDTCF 347 I+ + GD+ + A + + L L ++T + Sbjct: 374 RDPWTDSAVRRFIRDAHLVRGDREL-ANVDMLLKLARADITGSAPRRRRAAEESWRSLRE 432 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSF-QLSQEDLH 405 + + + ++ PL G++++++ G PG+ + +I + + E + Q +E Sbjct: 433 RVDRVREQDAIERLKSPLDGNELMEHFGRGPGRWIKHIKDYLENEVVEGRLAQDDKETAW 492 Query: 406 HLLRKLIAS 414 L + + Sbjct: 493 RLAEEYVRE 501 >gi|222111590|ref|YP_002553854.1| poly(a) polymerase [Acidovorax ebreus TPSY] gi|221731034|gb|ACM33854.1| poly(A) polymerase [Acidovorax ebreus TPSY] Length = 531 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 134/310 (43%), Gaps = 45/310 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 40 PELVDRRASDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKSLFRRA- 98 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 99 ---FIIGKRFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVGGNEKTSKAQLAGMHHA 155 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD Sbjct: 156 VDASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPETEVVVDFHKGIEDAKKRVLRMIGDP 215 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A ++ ++ + L+ + R++ E+ KLL+ Sbjct: 216 ATRYREDPVRIIRAVRFAAKLSPLGFALEPKTAKPLVECEPLLREVPQSRLFDEMLKLLQ 275 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-------VIEAEQVFEWKIDSLLRFI 267 + L +I + + G+ I+ + ++ +D+ S +V E K + + Sbjct: 276 TGHALASIAQLKSLGLATGIYP-LLDVVVDRSSHPFVQAALADTDRRVGEGKPVAPSFLL 334 Query: 268 VLISWQDKKS 277 + WQD K+ Sbjct: 335 ACVLWQDVKA 344 >gi|148244592|ref|YP_001219286.1| poly(A) polymerase [Candidatus Vesicomyosocius okutanii HA] gi|146326419|dbj|BAF61562.1| poly(A) polymerase [Candidatus Vesicomyosocius okutanii HA] Length = 383 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 D D + +++++NK K+ +VGG VRD L++L+ +D DIAT P++V ++F ++R Sbjct: 14 LLDKDALKVINIINKAGFKAYLVGGCVRDFLLSLTPKDFDIATNAKPEQVHKLFKRSRL- 72 Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLI---TDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ +K+ ++ T RS + +G + + + D +RRD +IN Sbjct: 73 ---IGRRFRLVHVMFSARKFIEVATFRSGKVQVANNGVVMRDNCYGNIEDDVVRRDLSIN 129 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D + +VIDYVGGL D+R + + IG+ R +D +R++R RF + ++ + Sbjct: 130 ALYYDIETQEVIDYVGGLQDIRVQELHVIGNPKKRFEQDPVRMIRVIRFQTKL-DFHLSN 188 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD 244 + A + L +S+ R++ E KL + + G+FK +F + Sbjct: 189 EIKSAIFEQAPLLGNISTIRLYEECIKLFHNEYGFKIYQRLEEYGLFKYLFKQTHKNEFI 248 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 + + + ++++ + + + + WQ + + KK Sbjct: 249 KKALLNTSDRIKRNQSVTPVFLFAVFLWQAQNERFFVIKK 288 >gi|124268204|ref|YP_001022208.1| putative polynucleotide adenylyltransferase protein [Methylibium petroleiphilum PM1] gi|124260979|gb|ABM95973.1| putative polynucleotide adenylyltransferase protein [Methylibium petroleiphilum PM1] Length = 535 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 133/320 (41%), Gaps = 45/320 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT- 66 D + +++ L++ ++ IVGGAVRD ++ L +D D+AT P++V +F + Sbjct: 44 PALVDDRALKVVATLHEAGYEAYIVGGAVRDMMLGLRPKDFDVATNATPEQVKGLFRRAF 103 Query: 67 ----RYKVIPT----SISYGTIKIICRKKYFDIT----------TLRSD-------LITD 101 R++++ + I++ + Y D T +++ + Sbjct: 104 IIGRRFRIVHVVYGRGREHEVIEVSTFRAYLDAAAAEQVAGNEKTSKAELSGKSHVVDAS 163 Query: 102 GRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRI 160 GR + D+ RRDFT+NALY D Q ++ +DY GG+ D + R ++ IGD R Sbjct: 164 GRVLRDNVWGPQHEDAARRDFTVNALYYDPQTQIVVDYHGGIADAKKRLLRMIGDPVTRY 223 Query: 161 LEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLN 220 ED +RI+R RF A G I+ L+ + R++ E+ KLL+ + L Sbjct: 224 REDPVRIIRVVRFAAKLG-FEIEPKTRAPMRDCAALLEAVPISRLFDEMIKLLQTGHALA 282 Query: 221 AIVHMYNGGIF------KEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLR--------- 265 +I + G+ IF + + D A + D+ R Sbjct: 283 SIAQLRKQGLLGAGPDAPGIFPLLDAVLADAGRNPARAAFIDAALADTDRRVGEDKPVAP 342 Query: 266 --FIVLISWQDKKSILSMAK 283 + + W + AK Sbjct: 343 SFLLACLLWHEVLVGWERAK 362 >gi|325955576|ref|YP_004239236.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Weeksella virosa DSM 16922] gi|323438194|gb|ADX68658.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Weeksella virosa DSM 16922] Length = 473 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 85/451 (18%), Positives = 169/451 (37%), Gaps = 62/451 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTI----LPDRVMRI 62 K +D I I + + KS +VGG VRD L+ + DID T L ++V + Sbjct: 5 KAINDPIFITIGETAKELKQKSYVVGGFVRDFLLERPGKQDIDFVTVGNGIILAEKVAKK 64 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 T + +GT + K + R + ++ V + D RRDF Sbjct: 65 LGNT--SKVSVFKRFGTAMFKYQNKELEFVGARKESYSEDSRKPFVENGTLEDDQKRRDF 122 Query: 123 TINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINAL G++ID G+ DL ++ I+ D +D LR++R RF A Sbjct: 123 TINALAISLNHEDFGQLIDPFDGIQDLEDKIIRTPLDPVITYSDDPLRMMRAIRFAAQL- 181 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV 238 + +I+ A + L+I+S ER+ E NK++ + P ++ + + I ++ Sbjct: 182 DFSIEEKSFRAIQENAHRLEIVSKERVMDEFNKIMLTQKPSKGLLLLDQANLLPLILPEL 241 Query: 239 QEI----------SLDQLSQVIEAEQVFEWKIDSL-LRFIVLIS---------------- 271 + D +E ++L LR+ L+ Sbjct: 242 CALKGVEDIDGKKHKDNFYHTLEVVDNIAKNTENLWLRWAALLHDIGKAVTKKFDPKVGW 301 Query: 272 ------WQDKKSILSMAKKFSLP--REIRY----FLISFFNCNFNQKTLSIPEIKKLFYL 319 + K + K+ LP ++++Y ++S + +++L + Sbjct: 302 TFHSHEYVGAKMTYKLFKRLKLPLGQDLKYVQKLVMMSSRPIAVISDEATDSALRRLLFD 361 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDV 370 D + + + A + +I + + + P++G+++ Sbjct: 362 ASDD-LDDLMVLCKADITTKNEKKQKRYIRNFELVEQKIKDVEERDRIRNFQPPISGEEI 420 Query: 371 VK-YGIPPGKKVGNILVHCKQEWINSSFQLS 400 ++ + + P K++G I K + + + Sbjct: 421 MEVFDLQPCKEIGVIKTAIKDAILEGEIENN 451 >gi|58697619|ref|ZP_00372820.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila simulans] gi|58535877|gb|EAL59663.1| poly A polymerase family protein [Wolbachia endosymbiont of Drosophila simulans] Length = 303 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 108/318 (33%), Positives = 162/318 (50%), Gaps = 20/318 (6%) Query: 97 DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDA 156 D+ DGR+AKV FT +W+AD+ RRDFT NALYAD+ G + DY GG+ DL+ R + FIG+A Sbjct: 2 DVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKVRRLNFIGNA 61 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 RI EDYLRILR FRF A ++ + L K ++ LS ERI EI KLLE Sbjct: 62 EDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCKKHSHMIQNLSGERIRDEILKLLECN 121 Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKK 276 +P + M + ++I +E+ + LS + D+L++ +L+ Sbjct: 122 DPFPTLKSMQESDVLQKIIP--KEVKCEILS------SSLLFGTDALVKLALLLRTTKND 173 Query: 277 SI---LSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 + ++K L + + + F N + LS E KK L+G ++ +KI Sbjct: 174 RLSLGEYVSKFLRLSNKQKKK-LLFLLSNDIKTELSEKEQKKYISLFGRELYCDLVKICG 232 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 N+ +S + P FPL+GDD++ G PGK +G L KQ W Sbjct: 233 VESGENVDE--------YISFANTFNIPKFPLSGDDLISIGHQPGKSLGRNLELLKQHWE 284 Query: 394 NSSFQLSQEDLHHLLRKL 411 +SS+ L++E+L + L Sbjct: 285 DSSYTLTKEELVLYAKSL 302 >gi|307259243|ref|ZP_07540973.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306866910|gb|EFM98768.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 436 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 53/362 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+NL V+D D + P++++ + P + T + Sbjct: 27 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKTKE----- 81 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R + +G + D +RRD TINA+ D G++ D GG Sbjct: 82 ---EYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 138 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLK 198 DL NR ++ I A ED LR+LR RF A + G K ++ L+ + A L Sbjct: 139 QDLANRLLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 195 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K NP + G +F + D+L V + EQ Sbjct: 196 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPE-----FDRLFGVPQPEQ-HHP 249 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +IDS + ++ ++ AK+ + E L+ C+ K L+ +I Y Sbjct: 250 EIDSGVHTLL---------VIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHY 300 Query: 319 LYG------DKVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKK 360 + + + +LK+ + H + + +L+V + + W+K Sbjct: 301 GHEVKGVKPARELSNRLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRK 360 Query: 361 PL 362 P Sbjct: 361 PQ 362 >gi|307728540|ref|YP_003905764.1| poly(A) polymerase [Burkholderia sp. CCGE1003] gi|307583075|gb|ADN56473.1| poly(A) polymerase [Burkholderia sp. CCGE1003] Length = 532 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 31/246 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 79 PALISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRAR 138 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ + +T R+ D T G Sbjct: 139 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASG 194 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 195 RVLRDNVWGEQHEDATRRDFTINAMYYDPATETVLDYHNGMADVRARLLRMIGDPATRYR 254 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A + ID+ + + + R++ E+ KL+ + + L Sbjct: 255 EDPVRMLRVVRFAAKL-DFEIDAATREPIASMADLINNVPAARLFDEMLKLMLSGHALAC 313 Query: 222 IVHMYN 227 + + Sbjct: 314 LKRLRQ 319 >gi|121595306|ref|YP_987202.1| poly(A) polymerase [Acidovorax sp. JS42] gi|120607386|gb|ABM43126.1| poly(A) polymerase [Acidovorax sp. JS42] Length = 531 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 134/310 (43%), Gaps = 45/310 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 40 PELVDRRASDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKSLFRRA- 98 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 99 ---FIIGKRFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVGGNEKTSKAQLAGMHHA 155 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD Sbjct: 156 VDASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPETEVVVDFHKGIEDAKKRVLRMIGDP 215 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A ++ ++ + L+ + R++ E+ KLL+ Sbjct: 216 ATRYREDPVRIIRAVRFAAKLSPLGFALEPKTAKPLVECEPLLREVPQSRLFDEMLKLLQ 275 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-------VIEAEQVFEWKIDSLLRFI 267 + L +I + + G+ I+ + ++ +D+ S +V E K + + Sbjct: 276 TGHALASIAQLKSLGLATGIYP-LLDVVVDRSSHPFVQAALADTDRRVGEGKPVAPSFLL 334 Query: 268 VLISWQDKKS 277 + WQD K+ Sbjct: 335 ACVLWQDVKA 344 >gi|119773971|ref|YP_926711.1| polynucleotide adenylyltransferase region [Shewanella amazonensis SB2B] gi|119766471|gb|ABL99041.1| metal dependent phosphohydrolase [Shewanella amazonensis SB2B] Length = 427 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 80/355 (22%), Positives = 148/355 (41%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRDSL+ L V+D D + + ++ + K P + T + Sbjct: 6 KTYLVGGAVRDSLLGLDVKDRDYMVVGATVEEMLAAGYRQVGKDFPVFLHPKTQE----- 60 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D RRD TINA+ + G + D GG+ Sbjct: 61 ---EYALARTERKSGTGYGGFVCHASPDVTLEEDLKRRDLTINAIAMAEDGSLHDPWGGV 117 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + +A +ED LR+LR RF A + + D+ L+ + L Sbjct: 118 ADLEARLLRHVCEA---FVEDPLRVLRVARFAARFAPQGFTVAPDTLALMRQLTESGELL 174 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E+ K+L +P + G + +F ++ L V + EQ + Sbjct: 175 YLTAERVWQELEKVLGCDSPQVFFDVLNQCGALEVLFPEIHA-----LFGVPQPEQ-WHP 228 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L A K + +++R+ + + K ++ + + Sbjct: 229 EIDTGVHTMM---------VLEQAAKLTPNKQVRFAAL----VHDLGKGVTPKALWPKHH 275 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K L + AL D + +SD F L D +++ Sbjct: 276 GHGQKG----LPLIKALCDRFRVPSDYKELALWVSDEHQNIHNAFELRADTILRL 326 >gi|304311633|ref|YP_003811231.1| Poly(A) polymerase [gamma proteobacterium HdN1] gi|301797366|emb|CBL45586.1| Poly(A) polymerase [gamma proteobacterium HdN1] Length = 467 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 134/351 (38%), Gaps = 40/351 (11%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 +L L + + +VGG++RD L+ +S +D D+AT P+++ ++F R Sbjct: 39 SPGARRVLETLTQSGYSAYLVGGSIRDGLLGISPKDFDVATNATPEQIRQLFRSCRL--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD------------------------LITDGRYAKV 107 + + ++ ++ T R + +G + Sbjct: 96 -IGQRFRLAHVRMGREIIEVATFRGHHHPDDDDDESNSEEAGNQKPRRASVSDEGMILRD 154 Query: 108 VFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 D++RRDFT NAL+ G ++D+VGG D+++R ++ IGD R ED +R Sbjct: 155 NVFGTEHEDAMRRDFTANALFYRLSDGAIVDHVGGFADIQSRRLRLIGDPDTRFREDPVR 214 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 ILR RF A + ID + L + + R++ EI K+ + + Sbjct: 215 ILRAIRFAAKL-DFAIDETLVKPIRDLGGLLDHVPAARLFEEIQKMFLSGYAAPVWQKLL 273 Query: 227 NGGIFKEIFLDVQEISLDQLSQVIEAE------QVFEWKIDSLLRFIVLISWQDKKSILS 280 G+ ++F + +S D Q+I ++ E K + + ++ W S+ Sbjct: 274 EFGLAPQLFPLLVNLS-DADHQMIRIAMQNTDTRIAEEKPVTPAFLLAVLLWP---SLKR 329 Query: 281 MAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 ++ + I + F ++ + ++ Sbjct: 330 EWERLKEDEDSAAPQFQQAAYRVISAQNHRISIPRRFQQPMREIWDLQQRL 380 >gi|54307652|ref|YP_128672.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Photobacterium profundum SS9] gi|73619818|sp|Q6LV05|CCA_PHOPR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|46912075|emb|CAG18870.1| putative tRNA nucleotidyltransferase [Photobacterium profundum SS9] Length = 411 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 76/406 (18%), Positives = 153/406 (37%), Gaps = 61/406 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L V D D P++++ + P + T + Sbjct: 2 QTYLVGGAVRDALLGLKVVDKDWMVVGATPEQMLAQGYEQVGSDFPVFLHPKTKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + + D +RRD TINA+ ++ G++ID G Sbjct: 57 ---EYALARTERKSGKGYTGFICYSAPDVTLEQDLMRRDLTINAIAQEKDGRLIDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL N+ ++ + A +ED LR+LR RF A + ++ L+ + L+ Sbjct: 114 QDLDNKILRHVSPA---FVEDPLRVLRVARFSARFAHLGFTIAPETIALMQEMVVAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ--------- 248 L+ ER+W E K L +NP + + G K + ++ + + Q +Q Sbjct: 171 ALTPERVWKEWEKSLSTENPEVFLTVLRQCGALKVVMPEIDALFGVPQPAQWHPEIDCGI 230 Query: 249 --VIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ A+Q E + ++RF + K K I ++ ++ + Sbjct: 231 HTLMVAKQAAELSPNKVIRFAAQVHDLGKALSPKDDLPSHKMHCKDGLKPIKALCQRLRV 290 Query: 288 PREIRYFLI-------SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 P + R + + N + + + ++ + +I A Sbjct: 291 PNDYRDTALMVCAQHTKIHHANEMRPATFVNILDQIDSWRKPERVIQLALCCRADARGRT 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILV 386 H++ ++ + + +V G GK + L Sbjct: 351 GHENDAYLQADILLAAFDAAQQVDVKP--IVAAGFK-GKDIKEQLA 393 >gi|237653425|ref|YP_002889739.1| poly(A) polymerase [Thauera sp. MZ1T] gi|237624672|gb|ACR01362.1| poly(A) polymerase [Thauera sp. MZ1T] Length = 456 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 13/223 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + ++L + K+ +VGGAVRD L+ +D D+AT+ P+ V F ++R Sbjct: 37 SPAARKVCAVLQEKGFKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRAAFRRSRI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + + ++ + +++T R +D GR + + + D+ RRDFT+ Sbjct: 94 -IGRRFKIVHVMSGPETIEVSTFRASQDAESADTDEHGRVLRDNVFGNQQEDATRRDFTV 152 Query: 125 NALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY D + ++DY G+ D++ +T++ IGD R ED +R+LR R A G ID Sbjct: 153 NALYYDPGTETIVDYHHGVADIQQKTLRMIGDPRTRYREDPVRMLRAVRLAAKLG-LTID 211 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 + L+ + + R++ E+ KLL + + L + + Sbjct: 212 PAARQPIREMGPLLENVPAARLFDEMLKLLFSGHSLKCLQQLR 254 >gi|95931324|ref|ZP_01314039.1| Polynucleotide adenylyltransferase region [Desulfuromonas acetoxidans DSM 684] gi|95132625|gb|EAT14309.1| Polynucleotide adenylyltransferase region [Desulfuromonas acetoxidans DSM 684] Length = 880 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 154/392 (39%), Gaps = 21/392 (5%) Query: 29 SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 VGG VRD L++ D+DI R F+ + + T +I Y Sbjct: 482 VYAVGGFVRDLLLHKKNLDVDIVVEGNAIDFARRFADQHACRVRAHEKFVTAVVIFDDGY 541 Query: 89 -FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGKVIDYVGGLN 143 D+ + R++ + V K D RRDFTIN L D G+++DY G Sbjct: 542 KLDVASTRTEYYLEPGALPNVEEASIKLDLYRRDFTINTLALALNHDSYGELLDYFGAQR 601 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILSS 202 DL ++ I+ + + +ED R+ R RF G K + ++ L+ S ++ + Sbjct: 602 DLHDKAIRVLHN--LSFVEDPTRMFRAVRFEQRLGFKLGMHTENLLRSAVEMDFVQRVGP 659 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK--- 259 R+++E+ +L +NP AI + G+ + D + +A++ W Sbjct: 660 LRLFNELTIILNEENPFPAISRLEELGLLACLC-DQWRVDARVKESFRQAQKALHWHELL 718 Query: 260 ------IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 ++ F+ L ++ ++ K S+P+ + L+ C + + Sbjct: 719 YTGSPVERWVVYFLCLSQPLSDDAMAAVCGKLSVPQRWQDILVGE-RCRVMKVFHRLERD 777 Query: 314 KKLFYLYGDKVMIAKLKIF--LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 ++ Y + +LK L Y L V + W+ L GDD++ Sbjct: 778 QQKLAEYRPSEVSQRLKGIGDEMLLYAMARTHSDAVRLAVSQYLTQWRDVKPLLNGDDLI 837 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQED 403 G+ G ++G +L + +++ Q++ Sbjct: 838 ALGVDRGPRIGEVLALLRDARLDAEVSSRQDE 869 >gi|90407232|ref|ZP_01215419.1| tRNA nucleotidyltransferase [Psychromonas sp. CNPT3] gi|90311655|gb|EAS39753.1| tRNA nucleotidyltransferase [Psychromonas sp. CNPT3] Length = 408 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 80/361 (22%), Positives = 145/361 (40%), Gaps = 57/361 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGA+RD L++L V+D D + P ++ + K K P + T + Sbjct: 2 QIFLVGGALRDKLLDLKVKDRDHVVVNATPKMLLDLGYKQVGKDFPVFLHPTTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y D RRD TINA+ GK+ID G Sbjct: 57 ---EYALARTERKNAPGYHGFDCYAGQDVSLVEDLQRRDLTINAMACSDDGKIIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDL+N+ ++ + A ED LR+LR RF A + ++ L+ + L+ Sbjct: 114 NDLKNKILRHVSPA---FCEDPLRVLRVARFAARFYHLGFRIASETLSLMRQLSLSGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+SER+W E +K L +P + G +F +++ + + A + + Sbjct: 171 SLTSERVWQETDKALATDDPQIYFSVLRECGALSILFPEIENLF------GVPAPKRWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ ++ A K S R+ + + K L+ PE+ Sbjct: 225 EIDTGIHTLM---------VVKQATKLSNDNAFRFACL----VHDLGKALTPPELWPSHK 271 Query: 319 LYGD------KVMIAKLKI--------FLALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G+ + +LK+ L ++ L H D +L ++ W+K Sbjct: 272 GHGELGLKVIRAFCQRLKVPNEYRDLALLVSEHHTLIHSAVTLDAAILLNIMDKCDAWRK 331 Query: 361 P 361 P Sbjct: 332 P 332 >gi|222100844|ref|YP_002535412.1| TRNA nucleotidyl transferase-related protein [Thermotoga neapolitana DSM 4359] gi|221573234|gb|ACM24046.1| TRNA nucleotidyl transferase-related protein [Thermotoga neapolitana DSM 4359] Length = 864 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 89/400 (22%), Positives = 156/400 (39%), Gaps = 23/400 (5%) Query: 13 SDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 L+N+ LL K D+ +VGG VRD L+ + DIDI K Sbjct: 453 PRLLNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIENLDIDIVVEGNAMEFAEYAKKFLP 512 Query: 69 KVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + T + + DI T R + V K D RRDFTINA+ Sbjct: 513 AKLVKHEKFMTASLFLKGGLRIDIATARMEYYESPARLPDVEMSTIKKDLYRRDFTINAM 572 Query: 128 Y----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G ++D+ GG DL+ I+ + ++D RILR RF + + Sbjct: 573 AIKLNPGDFGLLVDFFGGYRDLKEGIIRVLH--TLSFVDDPTRILRAIRFEQRFDFHIEE 630 Query: 184 -SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-----D 237 ++ L+ + L+ + RI EI K+LE KNPL +I M + K +F Sbjct: 631 TTERLLRQAVEEGYLEKTTGARIRQEIEKILEEKNPLKSIRRMAEFDVIKHLFPKTYYTP 690 Query: 238 VQEISLDQLSQVIE-AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 V + ++ L + I E+ F V + + D++S + K++SL + + + Sbjct: 691 VMDRKMENLFRNIPWVEENFGEVNKFYAVLHVFLEFYDEESWEGVKKRYSLKKNLINE-V 749 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + + E ++Y ++ I L Y ++ + Sbjct: 750 KHVEKSAQALLEMLKEGVPTSFIYPLVKGVSNETICHFLAYLEGEEEEKFKAHLLKIRDT 809 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 +K + G+ +++ GI GK +G +L + ++ Sbjct: 810 KLEK----IDGNYLIEKGIKSGKIIGEVLEKILMKKLDGD 845 >gi|270158080|ref|ZP_06186737.1| multifunctional CCA protein [Legionella longbeachae D-4968] gi|289163654|ref|YP_003453792.1| tRNA nucleotidyltransferase [Legionella longbeachae NSW150] gi|269990105|gb|EEZ96359.1| multifunctional CCA protein [Legionella longbeachae D-4968] gi|288856827|emb|CBJ10638.1| tRNA nucleotidyltransferase [Legionella longbeachae NSW150] Length = 410 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 85/410 (20%), Positives = 150/410 (36%), Gaps = 55/410 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+NL V++ D + PD +++ + + P + T + Sbjct: 2 KVYLVGGAVRDQLLNLPVKERDWVVVGSSPDELLQKKFRQVGRDFPVFLHPETNE----- 56 Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ D+QG++ID G Sbjct: 57 ---EYALARTERKSAPGYYGFSCDFSKQVTLEEDLARRDLTINAIAMDEQGQLIDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL+ R ++ + A +ED +R+LR RF A + G K D L+ ++ + L Sbjct: 114 QDLKRRLLRHVSPA---FVEDPVRVLRVARFAARFHYLGFKLADETRSLMYTMVRRGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE----- 253 L +ER+W E + LE KNP I + + G + I +++ + E Sbjct: 171 HLVAERVWQEWQQSLEEKNPEQFIWTLRSCGALRVILPEIEALFGIPNPYRYHHEVDSGV 230 Query: 254 -------QVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 D ++RF L+ K I S+ + + Sbjct: 231 HSLFVVQAAVALTNDPIIRFAALVHDLGKALSPMDNWPSHHGHEERGVAIIQSLCTRLRI 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 P + R + + L + + L + K+F + + C Sbjct: 291 PNDYRNLAVMVSRFHLTIHRLFELQAATIVKLLEQSDAFRRSKLFYNMLIACQADAEGCG 350 Query: 348 ILQVLSDIIHWK---KPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 S W + + +V G G+ + IL + + Sbjct: 351 KTVNYSQSKLWSYLLEECAKVNTKTIVAEGYE-GEAIKQILHQRRVACVE 399 >gi|193215015|ref|YP_001996214.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chloroherpeton thalassium ATCC 35110] gi|193088492|gb|ACF13767.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chloroherpeton thalassium ATCC 35110] Length = 477 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 83/456 (18%), Positives = 160/456 (35%), Gaps = 58/456 (12%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS-KTRY 68 F+ I +L ++ + VGG VRDSL+ +DIDI P + K Sbjct: 12 FNAEIFRKIGALADEMQLPCYAVGGFVRDSLLQRKCKDIDIMVVGEPIAFAKAAKTKLNG 71 Query: 69 KVIPTSISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFT 123 + T ++ + + + R + + + + D RRDFT Sbjct: 72 FGFAVFERFRTARLSLKDREMGEIELEFVGARKESYSPESRKPITEVGTLQDDLSRRDFT 131 Query: 124 INALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE 179 INAL GK+ D G NDL + ++ + +D LR++R RF + Sbjct: 132 INALAVSLNQATFGKLTDLFNGRNDLSAQLLRTPLEPESTFSDDPLRMMRAARFASQLN- 190 Query: 180 KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 N++ + VA + + I+S ER+ E+ K++ + P + +Y G+ KEI ++ Sbjct: 191 FNLEPEIFVAMQNMHRRIGIVSKERVRDELFKIMASPKPSVGLDILYKTGVLKEILPELT 250 Query: 240 EI-SLDQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKS----------- 277 + ++Q+ V + + LR L K Sbjct: 251 AMAGVEQIDGVGHKDTFYHTLKVVDNISEMSEKFWLRMAALFHDVGKPKTKRFKEGHGWT 310 Query: 278 -----------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMI 326 + + +K P + ++ + LS EI Sbjct: 311 FHGHDAVGAAMMQRIFRKQKFPLDHLEYVQKLIRLHLRPIPLSGEEITDSAIRRLMFEAG 370 Query: 327 AKLKIFLALHYNNLTHQDTCFILQVLS-------------DIIHWKKPLFPLTGDDVVKY 373 +L + L ++T ++ + +++S + K P+ G ++++ Sbjct: 371 EELDDLMMLCRADVTSKNPQKVEKIMSNFLLVEEKVSQVCEKDLLAKWRPPINGVEIMEM 430 Query: 374 -GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + GK VG + + I+ +E L Sbjct: 431 FNLSEGKIVGLLKKSMENAIIDGVIPYDKEAAMRFL 466 >gi|158319038|ref|YP_001511546.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EAN1pec] gi|158114443|gb|ABW16640.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EAN1pec] Length = 508 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 85/465 (18%), Positives = 163/465 (35%), Gaps = 75/465 (16%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ---------------DIDIATTILPDRV 59 + + +VGG+VRD+L+ + D+D T P+RV Sbjct: 27 ADELGRIFADHGHTLHLVGGSVRDALLGRAGDPSDTSATGGTGGGAPDLDFTTDARPERV 86 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSL 118 + I I++GT+ + R F++TT RS+ R V + + D + Sbjct: 87 LEITRGWAEATWDAGIAFGTVGLARRGVRFEVTTYRSESYDRTSRNPAVTYGEGLQEDLV 146 Query: 119 RRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ G +D GG+ DL ++ G +D LRI+R RF A Sbjct: 147 RRDFTVNAMAVSVPGHDFVDLFGGMADLARGVLRTPGPPEASFDDDPLRIMRAARFEAAL 206 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G + + A + I+S ER+ E+ KL+ +++P + + G+ + + Sbjct: 207 G-LTPVPELVAAMRSRASRISIVSPERVRDELRKLIASRDPAAGLERLVEVGVADLVLPE 265 Query: 238 VQEISLDQLSQVIEAEQVFEWK--------------IDSLLRFIVLISWQDKKSILS--- 280 + + + ++ + + + V+ D +LR+ L+ K Sbjct: 266 LGAMRM-EIDEHHQHKDVYAHTMTVLRQAMALEDDGPDEILRWAALLHDIGKPRTRRHIA 324 Query: 281 ---------------MAKK----FSLPREIRYFLISFFNCNFNQKTLSI----------- 310 M ++ P+++ + S + Sbjct: 325 GGGVSFHHHEVVGRDMTRRRLVALRFPKDVVDAISSLVYLHLRFHGYGSGEWTDAAVRRY 384 Query: 311 -----PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 P++ +L L + L + ++ L +I + L Sbjct: 385 VHDAGPQLSRLHKLVRSDCTTRNRRKAENLARAYRSLEERIADLAAREEIAAIRPE---L 441 Query: 366 TGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 +GDD++ G+PP + VG + + L R Sbjct: 442 SGDDIMALLGLPPSRLVGQARAYMLDVRFERGLLGREAAEAELFR 486 >gi|254805021|ref|YP_003083242.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha14] gi|254668563|emb|CBA06042.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha14] Length = 410 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 120/300 (40%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + ++ L+ + A L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMKLMRQMVANGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + +I + + Sbjct: 225 SGIHTLM---------TLQRAANMGLSLPERYAAL----LHDLGKAKTPSDILPRHHGHD 271 >gi|169632938|ref|YP_001706674.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter baumannii SDF] gi|226702126|sp|B0VUU0|CCA_ACIBS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|169151730|emb|CAP00532.1| tRNA nucleotidyl transferase [Acinetobacter baumannii] Length = 412 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 83/424 (19%), Positives = 160/424 (37%), Gaps = 59/424 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ S Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDYLLGHSYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ GK+ D GG Sbjct: 57 ---EYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 NDL N+ ++ + +A ED LR+LR RF A Y I + L+ ++ L Sbjct: 114 NDLENKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L + + + G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALMENHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPAKELPRHIMHEERGIKPVTQLCERLRV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + + +S + +L + +L +++ F+ + + Sbjct: 291 PTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPERVEAFVQACECDAKGRL 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 + + + + D+ + G ++G +L+ + E + F+ + Sbjct: 351 GLEDRPYPQAQYMREAMQIVRSIKVQDLPEN--IKGAEIGEMLIQYRIEALA-EFKNQHQ 407 Query: 403 DLHH 406 L H Sbjct: 408 SLSH 411 >gi|91781890|ref|YP_557096.1| Poly(A) polymerase [Burkholderia xenovorans LB400] gi|91685844|gb|ABE29044.1| Poly(A) polymerase [Burkholderia xenovorans LB400] Length = 529 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 31/246 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 76 QALISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRAR 135 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ + +T R+ D T G Sbjct: 136 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAPPARRLKRDELDRRTHAVDASG 191 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 192 RVLRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYR 251 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A + I+ + + + R++ E+ KL+ + + L Sbjct: 252 EDPVRMLRVVRFAAKL-DFEIEDSTREPIAGMADLINNVPAARLFDEMLKLMLSGHALAC 310 Query: 222 IVHMYN 227 + + Sbjct: 311 LKRLRQ 316 >gi|171056797|ref|YP_001789146.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leptothrix cholodnii SP-6] gi|226702071|sp|B1Y634|CCA_LEPCP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|170774242|gb|ACB32381.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Leptothrix cholodnii SP-6] Length = 419 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 68/344 (19%), Positives = 138/344 (40%), Gaps = 29/344 (8%) Query: 31 IVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYF 89 +VGGAVRD L+ V D D + P++++ + P + T + Sbjct: 5 LVGGAVRDQLLGRPVGDRDWVVVGATPEQMVAAGYLPVGRDFPVFLHPRTHE-------- 56 Query: 90 DITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 + R++ T Y VF D RRD TINA+ D+ G +ID GG DL Sbjct: 57 EYALARTERKTAPGYHGFVFHTGADVSLDDDLARRDLTINAMALDEAGTLIDPWGGRRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKA--KKGLKILSSE 203 ++ ++ +G A ED +RILR RF A G+ ++ + L + + L E Sbjct: 117 AHKCLRHVGAA---FAEDPVRILRLARFAARLGDFSVAPETLALCRRMVEAGEVDALVPE 173 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E+++ L P + + G + +V ++L V + + ++D+ Sbjct: 174 RVWQELSRGLMEARPSRMFEVLRDCGALARLLPEV-----ERLFGVPQRAD-YHPEVDTG 227 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEIKKLFYLYG 321 + ++++ ++ + + L ++ + + S + + Sbjct: 228 VHLMMVLDTAAQRGVSLPVRYACLGHDLGKGTTPAHILPRHIGHEGRSAALLAPMSARLK 287 Query: 322 DKVMIAKLKIFLALHYNNL---THQDTCFILQVLSDIIHWKKPL 362 +L +A ++N+ + D ++++ W++P Sbjct: 288 VPAACHELADLVAREHSNVHGSGNFDAAALVRLFDRCDAWRRPE 331 >gi|206561603|ref|YP_002232368.1| putative polynucleotide adenylyltransferase [Burkholderia cenocepacia J2315] gi|198037645|emb|CAR53588.1| putative polynucleotide adenylyltransferase [Burkholderia cenocepacia J2315] Length = 516 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 33/248 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD---- 101 + + + ++ +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPKRLKRDELDRRTHAVDA 180 Query: 102 -GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHR 159 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 181 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR 240 Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 ED +R+LR RF A G I+ + + + R++ E+ KLL + + L Sbjct: 241 FREDPVRMLRVVRFAAKLG-FEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHAL 299 Query: 220 NAIVHMYN 227 + + Sbjct: 300 ACLQRLRK 307 >gi|94676710|ref|YP_589047.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166233843|sp|Q1LSL7|CCA_BAUCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|94219860|gb|ABF14019.1| tRNA nucleotidyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 412 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 142/355 (40%), Gaps = 42/355 (11%) Query: 30 CIVGGAVRDSLMNLSVQDIDIATTILPDR-VMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ + V++ D + +++ + K P + K + Sbjct: 4 YLVGGAVRDRLLQIPVKERDWVVIGTTLQDMLKAGYQQVGKDFPVFLHP--------KSH 55 Query: 89 FDITTLRSDLIT-DGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + R + + G Y + + D RRD TINA+ D+ G +ID G Sbjct: 56 EEYALARIEKKSATGGYTGFTYKASSEITLEEDLKRRDLTINAIACDENGSLIDPYNGQR 115 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILS 201 DL R ++ + +A ED LR+LR RF A I + + L +LS Sbjct: 116 DLNQRWLRHVSEA---FCEDPLRVLRVARFAAQLAYLNFRIVPETRLMMQHMISELPLLS 172 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERIW E K L ++P + + G K +F ++ + + A + +ID Sbjct: 173 PERIWKETEKALATRDPQIYFQVLRDCGALKTLFPEIDALF------GVPAPAKWHPEID 226 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ ++MA + S +R+ + C+ K L+ + + +G Sbjct: 227 TGIHTMM---------TVAMAARLSDSIAVRFASL----CHDIGKGLTPRDHWPSHHGHG 273 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376 + + L N + ++ I+ D++H+ L P T ++K Sbjct: 274 PAGIPLVQSLCQRLRVPN-SIRNLAIIVTEYHDLLHYAVKLKPKT---LIKLFYA 324 >gi|29653638|ref|NP_819330.1| poly(A) polymerase [Coxiella burnetii RSA 493] gi|153208652|ref|ZP_01946904.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177'] gi|161829839|ref|YP_001596236.1| poly(A) polymerase [Coxiella burnetii RSA 331] gi|165919793|ref|ZP_02219536.1| poly(A) polymerase [Coxiella burnetii RSA 334] gi|212218121|ref|YP_002304908.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154] gi|29540900|gb|AAO89844.1| poly(A) polymerase [Coxiella burnetii RSA 493] gi|120575838|gb|EAX32462.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177'] gi|161761706|gb|ABX77348.1| poly(A) polymerase [Coxiella burnetii RSA 331] gi|165916876|gb|EDR35480.1| poly(A) polymerase [Coxiella burnetii RSA 334] gi|212012383|gb|ACJ19763.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154] Length = 439 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 136/330 (41%), Gaps = 32/330 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R Sbjct: 39 SPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--------------DGRYAKVVFTRDWKADS 117 + + + + +++T R++ ++ + D+ Sbjct: 96 -IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTIEEDA 154 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR R A Sbjct: 155 WRRDFTVNALYYNITDFSVIDFTGGMRDLHQRLIRMIGDPTQRYHEDPVRLLRAIRLAAK 214 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I D K L+ + S R+++E+ K+ + + + + + +F Sbjct: 215 L-DFKIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFP 273 Query: 237 DVQEI----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 + I +L +L+ E+ + + + W + + M + F Sbjct: 274 EAATILEKTRQPLYENLIKLALKATDERFHNQQSLNPGFLFAIFLWPPVQEL--MQQHFK 331 Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 + + L N ++ +P ++L Sbjct: 332 KHKRLFPALYHGINTALQRQVTILPLPRRL 361 >gi|261868441|ref|YP_003256363.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413773|gb|ACX83144.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 434 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 42/363 (11%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +++ + +VGGAVRD L+NL VQD D P+ +++ K P + T Sbjct: 1 MSENHFQIYLVGGAVRDQLLNLPVQDRDWVIVGATPEALLQQGYHQVGKDFPVFLHPQTK 60 Query: 81 KIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 + + R++ + G + + D +RRD TINA+ D QG + Sbjct: 61 E--------EYALARTERKSGAGYTGFICDFSPDINLEQDLIRRDLTINAMAQDLQGNLF 112 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIK 192 D GG DL NR ++ + A +ED LR+LR RF A Y G K + L+ + Sbjct: 113 DPYGGAQDLANRVLRHVSPA---FVEDPLRVLRVARFAARYHYLGFKIAEETLQLMKDLT 169 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 A+ L+ L++ER+W+E K L KNP + G K +F + LD L V Sbjct: 170 AQGELQHLTAERVWAETEKALNEKNPEIYFETLRLVGALKVLFPE-----LDALYGVPNP 224 Query: 253 EQVFEWKIDSLLRFIVLIS-----------WQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + +IDS + ++++ + ++ + + S+ + Sbjct: 225 AK-YHPEIDSFVHTMMVLQQATLLSEQVDCHKSAVRFAAICHDLGKAKTPK---QSWPHH 280 Query: 302 NFNQKTLSIPEIK--KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + ++K P K + G +A+L H + + I+++ + W+ Sbjct: 281 HGHEKLGMAPTQSLCKRLKVPGYYQQLAELTCEYHTHIHKIFELRPETIVKLFNTFDVWR 340 Query: 360 KPL 362 KPL Sbjct: 341 KPL 343 >gi|291618936|ref|YP_003521678.1| Cca [Pantoea ananatis LMG 20103] gi|291153966|gb|ADD78550.1| Cca [Pantoea ananatis LMG 20103] Length = 429 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 72/362 (19%), Positives = 144/362 (39%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+ L V+D D + P+ ++ + + P + Sbjct: 26 KTFLVGGAVRDALLKLPVKDKDWVVVGATPEAMLEQGYQQVGRDFPVFLHP--------D 77 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D RRD TINA+ D QG++ D G Sbjct: 78 SREEYALARTERKNGKGYTGFTTWSAPDVTLEQDLQRRDLTINAIARDAQGELYDPYHGQ 137 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ +R ++ + DA ED LR+LR RF A + N ++ L+ + L Sbjct: 138 KDIADRQLRHVSDA---FSEDPLRVLRVARFAARFAHLNFRIADETQALMRQMAESGELA 194 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L + NP + + G + +F ++ + + A + Sbjct: 195 DLTAERVWKETEKALSSHNPQVYFQVLRDCGALQGLFPEIDNLF------GVPAPARWHP 248 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+++ S ++R+ + + K L+ E + Sbjct: 249 EIDTGVHTLM---------ALTLSAGLSEAIDVRFATLF----HDVGKALTPVEKWPSHH 295 Query: 319 LYGD------KVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKK 360 +G + +L++ A+ + + + ++ + + W+K Sbjct: 296 GHGPAGVPLVAALCQRLRVPNAIRDLALLVTEFHDMMHTIEQRPADALIGLFDRLDAWRK 355 Query: 361 PL 362 P Sbjct: 356 PE 357 >gi|212213205|ref|YP_002304141.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212] gi|212011615|gb|ACJ18996.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212] Length = 438 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 134/335 (40%), Gaps = 42/335 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R Sbjct: 39 SPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--------------DGRYAKVVFTRDWKADS 117 + + + + +++T R++ ++ + D+ Sbjct: 96 -IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTIEEDA 154 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR R A Sbjct: 155 WRRDFTVNALYYNITDFSVIDFTGGMRDLHQRLIRMIGDPTQRYHEDPVRLLRAIRLAAK 214 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I D K L+ + S R+++E+ K+ + + + + + +F Sbjct: 215 L-DFKIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFP 273 Query: 237 D---------------VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSM 281 + + +++L + +Q + W + + M Sbjct: 274 ESATILEKTRQPLYENLIKLALKATDERFHNQQSLNPGF-----LFAIFLWPPVQEL--M 326 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 + F + + L N ++ +P ++L Sbjct: 327 QQHFKKHKRLFPALYHGINTALQRQVTILPLPRRL 361 >gi|320157465|ref|YP_004189844.1| tRNA nucleotidyltransferase [Vibrio vulnificus MO6-24/O] gi|319932777|gb|ADV87641.1| tRNA nucleotidyltransferase [Vibrio vulnificus MO6-24/O] Length = 407 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 153/403 (37%), Gaps = 61/403 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + V D D + ++++ K P + T + Sbjct: 2 EVYLVGGAVRDKLLGIPVYDHDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKTKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F+ D + D LRRD TINA+ D QG + D GG Sbjct: 57 ---EYALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGALYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH---YGEKNIDSD-GLVASIKAKKGLK 198 DL++R ++ + +A +ED LR+LR RF A G + D L+ SI A L Sbjct: 114 QDLQDRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETLQLMQSIAASGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L++ER+W E +K L P + + G + ++ + + Q + Sbjct: 171 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ AEQ + +++RF + K K I + ++ + Sbjct: 231 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKGVTPPSEWPSHKMHCHTGLKLIKQLCERVRV 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-------KVMIAKLKIFLALHYNNL 340 P E R + + N + + + + ++ + + L A H Sbjct: 291 PNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAERLNDILLCCQADHAGRQ 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 QD + + + + +++ G G + + Sbjct: 351 GLQDHPYPQAERIQLAYQAALSVEVQS--IIQDGFK-GPAIRD 390 >gi|161486663|ref|NP_933364.2| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio vulnificus YJ016] gi|73619901|sp|Q7M7K5|CCA_VIBVY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase Length = 407 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 82/403 (20%), Positives = 152/403 (37%), Gaps = 61/403 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + V D D + ++++ K P + T + Sbjct: 2 EVYLVGGAVRDKLLGIPVYDQDWVVVGATAEQMLNAGYSPVGKDFPVFLHPKTKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F+ D + D LRRD TINA+ D QG + D GG Sbjct: 57 ---EYALARTERKTGQGYKGFECFFSPDVTLEEDLLRRDLTINAIAMDSQGVLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL++R ++ + +A +ED LR+LR RF A ++ L+ SI A L Sbjct: 114 QDLQDRILRHVSEA---FVEDPLRVLRVARFAAKLAPLGFRVADETMQLMQSIVASGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L++ER+W E +K L P + + G + ++ + + Q + Sbjct: 171 ALTAERVWQEWHKSLLTPAPQQFLAVLRQCGALAVVLPEIDALFGVPQPEKWHPEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ AEQ + +++RF + K K I + ++ + Sbjct: 231 HTLLVAEQAAKLSSSAVVRFAAQVHDLGKGVTPPSEWPSHKMHCHTGLKLIKQLCERVRV 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-------KVMIAKLKIFLALHYNNL 340 P E R + + N + + + + ++ + + L A H Sbjct: 291 PNEFRDLALMVCEQHSNIHRAAELKPQTMVKIFNKLDVWRKAERLNDILLCCQADHAGRQ 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 QD + + + + V++ G G + + Sbjct: 351 GLQDHPYPQAERIQLAYQAALSVEVQS--VIQDGFK-GPAIRD 390 >gi|109899587|ref|YP_662842.1| metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c] gi|122971671|sp|Q15QQ0|CCA_PSEA6 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|109701868|gb|ABG41788.1| metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c] Length = 405 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 86/416 (20%), Positives = 147/416 (35%), Gaps = 57/416 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V+D D + ++ + K P + T + Sbjct: 2 QVYLVGGAVRDKLLERPVKDKDWVVVGASEADMLAKGFQQVGKDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ YA + D LRRD T+NA+ D G +ID G Sbjct: 57 ---EYALARTERKIGQGYAGFECDTSTNVTLEQDLLRRDLTVNAMAMDDNGNIIDPFNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DLRNR ++ + DA ED LR+LR RF A Y ++ L+A+I L Sbjct: 114 KDLRNRVLRHVSDA---FEEDPLRVLRVARFAARYASYGFSIADETKTLMANITQSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLDQ-L 246 LS+ER+W E K L P + G K F ++ + +D + Sbjct: 171 HLSAERVWVETAKSLLEDTPQIYFETLRECGALKVWFAELDCLWGIPNPAKWHPEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ EQ +RF L+ K I ++ ++ + Sbjct: 231 HSMMVLEQSVRVSHKLSVRFAALVHDLGKGLTPPEEWPSHRGHEKRGLVPINTLCERLKV 290 Query: 288 PREIRY--FLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + R L+S F+ + + L I + L + + Sbjct: 291 PNDCRDLALLMSEFHSHVHHAFKLKAATINDFLDKCDVWRKPERFADLLLACTADAKGRT 350 Query: 345 TCFILQVLSDIIHWKKPLFP--LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 + W+ L + ++V+ G G ++ L + I ++ Sbjct: 351 GFEERPYPNADYIWQAYLLAKEVNVQEIVQAGYK-GAEIKQQLRQKRIHAIATNVA 405 >gi|254490330|ref|ZP_05103519.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Methylophaga thiooxidans DMS010] gi|224464463|gb|EEF80723.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Methylophaga thiooxydans DMS010] Length = 408 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 146/347 (42%), Gaps = 40/347 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 +S +VGG VRD L+ L+++D D + P+ ++ + + K P + T + Sbjct: 2 QSYLVGGCVRDKLLGLTIKDRDWVVVGSTPEHMLTLGFRPVGKDFPVFLHPETQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ D G +ID G Sbjct: 57 ---EYALARTERKSGRGYRGFDVYASPDVTLEQDLARRDLTINAIAEDGDGNLIDPFNGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG-LVASIKAKKGLKILS 201 DL N ++ + A +ED +R+LR RF A + D L+A++ L L Sbjct: 114 ADLDNGILRHVSPA---FIEDPVRVLRLARFAARFDFSIADETKQLIAAMIDSGELDHLV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 SER+W E++K L+ P + G K +F +V D+L V + + + ++D Sbjct: 171 SERVWQELSKALQTDKPSTFFTTLREVGALKILFPEV-----DRLFGVPQIPK-WHPEVD 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++++ A + + +R+ + C+ K ++ ++ + Sbjct: 225 TGIHVMMVVDQ---------AARLTNDVSVRFAAL----CHDLGKGITPADVLPSHKGHE 271 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 +++ AL + T ++T + +++ LF L D Sbjct: 272 ----ATSVELTKALCHRLRTPKETTTLAMKVAEFHTDVHLLFELNAD 314 >gi|154249575|ref|YP_001410400.1| polynucleotide adenylyltransferase region [Fervidobacterium nodosum Rt17-B1] gi|154153511|gb|ABS60743.1| Polynucleotide adenylyltransferase region [Fervidobacterium nodosum Rt17-B1] Length = 883 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 93/416 (22%), Positives = 174/416 (41%), Gaps = 27/416 (6%) Query: 14 DLINILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 +L+ ++ N+ +VGG VRD ++N+ DIDI + ++ ++ Sbjct: 469 NLLRLIGFFGNEMNSPVYVVGGFVRDLILNIENYDIDIVVEGNGIEFAKYMAQQLNAIVV 528 Query: 73 TSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY--A 129 + T +I + + D+ T R++ V K D RRDFTINA+ Sbjct: 529 PYEKFFTANVIFKDGFKIDVATARTEYYESPGELPQVDISTIKKDLYRRDFTINAMAIKL 588 Query: 130 DQQ--GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + Q G + D+ DL I+ + + +ED R++R RF YG K +++ L Sbjct: 589 NPQDFGTLYDFFNCQKDLEEGVIRVLHN--LSFVEDPTRMIRAVRFEQRYGFK-MENYTL 645 Query: 188 VASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD------VQ 239 K L+ +S RI EI K+LE KNP+ AI M + K IF ++ Sbjct: 646 DLLKKNLSERYLERVSGSRIRQEIEKILEEKNPIKAIKRMAELDMIKHIFPKTYYTATME 705 Query: 240 EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 E + + ++ FE D + + + DK ++ M K+ P++ L Sbjct: 706 EKFVRLFKFIPYLKERFENFNDFYAVSTIFLEYYDKSTLEEMRAKYGYPKKFIETLKFTE 765 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKV-MIAKLKIFLALHYNN-LTHQDTCFILQVLSDIIH 357 N K+L Y + D + K ++ H + L + ++L + +++ Sbjct: 766 NIIIPVKSLIENR-----YPFSDIYKVCGKSNPYIYSHISAYLDEDEQNYLLSYIDTVLN 820 Query: 358 WKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + +TG +++ Y + G + NIL +++S + + +++K I Sbjct: 821 TRIEK--VTGKYLMERYQLKAGPILNNILEELFCLKLDNSNLSEEIAIESIVKKHI 874 >gi|325127938|gb|EGC50840.1| poly(A) polymerase family protein [Neisseria meningitidis N1568] Length = 374 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 10/234 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 N++ L ++ +VGGA+RD L+ + +D D+AT P++V ++F ++R Sbjct: 41 AENVIRRLKGARFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + ++TT R GR K + D++RRDFT NALY D Sbjct: 97 RRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYD 156 Query: 131 QQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +++D+ G+ D+ R + IGDA R ED +RILR R G ++ + Sbjct: 157 PEKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLG-FDLSEETAAP 215 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 ++ LK R++ EI KLL + + + + I +I + + + Sbjct: 216 IAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRV 269 >gi|160897631|ref|YP_001563213.1| poly(A) polymerase [Delftia acidovorans SPH-1] gi|160363215|gb|ABX34828.1| poly(A) polymerase [Delftia acidovorans SPH-1] Length = 529 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 133/310 (42%), Gaps = 45/310 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D I+++ L ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 39 PNLVDRRAIDVVETLQDAGYEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRA- 97 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 98 ---FIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEAVSGNERTSKAQLAGMHHA 154 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFTINA+Y D + ++ +DY G++D + R ++ IGD Sbjct: 155 VDASGRVLRDNVWGPQDQDATRRDFTINAMYYDPRTQIVVDYHKGIDDAKKRMLRMIGDP 214 Query: 157 HHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A I+ ++ + L + R++ E+ KLL+ Sbjct: 215 ATRYREDPVRIIRAVRFAAKLAGKGFKIEPKTAKPLVECEPLLADVPQSRLFDEMLKLLQ 274 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ-------VIEAEQVFEWKIDSLLRFI 267 + L ++ + G+ + I+ + ++ +++ Q +V E K + + Sbjct: 275 TGHALASVEQLRGLGLARGIY-SLLDVVVERAEQPFVRAALTDTDRRVEEGKPVAPSFLL 333 Query: 268 VLISWQDKKS 277 + W D K+ Sbjct: 334 ACVLWHDVKT 343 >gi|317485556|ref|ZP_07944433.1| poly A polymerase head domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923236|gb|EFV44445.1| poly A polymerase head domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 601 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 87/443 (19%), Positives = 169/443 (38%), Gaps = 43/443 (9%) Query: 7 HKWFHDSDLINILSLLNKGED-------KSCIVGGAVRDSLMNLSV---QDIDIATTILP 56 K ++L +L++ + VGG VRD +++ D+D+ Sbjct: 147 AKLLSTRLPQHMLHMLHRAGELGDRLQVSVYAVGGFVRDIMLSRPAVEFDDVDLVVEGDG 206 Query: 57 DRVMRIFSKTRYKVIPTSISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTR 111 R ++ + ++ T II + D+ T R + V Sbjct: 207 IAFARALAQELGGRVREHRTFMTALIIYHDENGEEQRLDVATARLEYYKYPAALPTVELS 266 Query: 112 DWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 K D RRDFTINA+ G ++D+ GG +D++ +TI+ I +ED RI Sbjct: 267 SIKMDLFRRDFTINAMALRLNKGQFGCLVDFFGGQSDIQRKTIRIIH--ALSFVEDPTRI 324 Query: 168 LRFFRFFAHYGEKNIDS-DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +R RF YG + L+ + + ++ LS RI E+N + P + + Sbjct: 325 IRAVRFEQRYGFHISTQGEKLIKNALSLNLVEKLSGARILHELNLIFREDEPETCLRRLN 384 Query: 227 NGGIFKEIFLDV-----QEISLDQLSQVIEAEQVFEWKIDSL---LRFIVLISWQDKKSI 278 G+ I + + LD L +VI+ ++ +K L + L S Sbjct: 385 ELGVLAAIHPSLVLNADKNELLDSLREVIDWYRLLYFKETPELSTLYLMALCSAVPAIET 444 Query: 279 LSMAKKFSLPREIRYFLISFFNC---------NFNQKTLSIPEIKKLFYLYGDKVMIAKL 329 + + L +R ++S N+++ T + ++ + L Sbjct: 445 ADILHRLGLTPTMREEILSLRESVRMTLVELINWHRDTQKKGQAEQSVSRLCALLAPLPL 504 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 + L L + + + + Q I W++ + GDD+ + G+ PG + G+++ Sbjct: 505 ESTLYLMARSDNEEISSSVSQY---IYKWRQIKVDINGDDLHRLGLEPGPQFGSVMRMVL 561 Query: 390 QEWINSSFQLSQEDLHHLLRKLI 412 ++ + ++E L +LI Sbjct: 562 AAKLDGKAE-TREAQLKLAEELI 583 >gi|332528518|ref|ZP_08404506.1| poly(A) polymerase [Hylemonella gracilis ATCC 19624] gi|332042029|gb|EGI78367.1| poly(A) polymerase [Hylemonella gracilis ATCC 19624] Length = 571 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 47/326 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++++ L ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 57 PDLVDKRALDVVRTLQDAGHEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKALFRRA- 115 Query: 68 YKVIPTSISYGTIKIICRK--------KYFDITTLRS----------------------- 96 + + ++ + + +++T R+ Sbjct: 116 ---FIIGRRFRIVHVVYGRGRQDKGLSEVIEVSTFRAYLDNAAAEQVKGNERTSKSELAG 172 Query: 97 ---DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKF 152 + + GR + D+ RRDFTINA+Y D + ++ +DY GG D + R ++ Sbjct: 173 MKHAVDSSGRVLRDNVWGPQDEDATRRDFTINAMYYDPETEIVVDYHGGFKDAKKRVLRM 232 Query: 153 IGDAHHRILEDYLRILRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEIN 210 IGD R ED +RI+R RF A +++ + L + R++ E+ Sbjct: 233 IGDPAARYREDPVRIIRAVRFAAKLSGLGFKLEAGTGRPLKDMRSLLADVPQSRLFDEML 292 Query: 211 KLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA------EQVFEWKIDSLL 264 KLL+ + L + + G+ + I+ + + + A +V E K + Sbjct: 293 KLLQTGHALATVAQLEKLGLARGIYPLLDLVVERAQQPFVHAALEDTDRRVGEGKPVAPS 352 Query: 265 RFIVLISWQDKKSILSMAKKFSLPRE 290 + + W D S K P+ Sbjct: 353 FLLASVLWADVHDGWSARLKRQAPQA 378 >gi|296161792|ref|ZP_06844594.1| poly(A) polymerase [Burkholderia sp. Ch1-1] gi|295887956|gb|EFG67772.1| poly(A) polymerase [Burkholderia sp. Ch1-1] Length = 529 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 31/246 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + I + L + ++ IVGGAVRD L+ + +D D+AT P++V ++F + R Sbjct: 76 QALISRNAIRVTEGLQQAGHRAFIVGGAVRDLLLGIKPKDFDVATDATPEQVQKLFRRAR 135 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ + +T R+ D T G Sbjct: 136 I----IGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDRRTHAVDASG 191 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 192 RVLRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRMIGDPATRYR 251 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A + I+ + + + R++ E+ KL+ + + L Sbjct: 252 EDPVRMLRVVRFAAKL-DFEIEDSTREPIAGMADLINNVPAARLFDEMLKLMLSGHALAC 310 Query: 222 IVHMYN 227 + + Sbjct: 311 LKRLRQ 316 >gi|167563975|ref|ZP_02356891.1| polyA polymerase [Burkholderia oklahomensis EO147] gi|167571119|ref|ZP_02363993.1| polyA polymerase [Burkholderia oklahomensis C6786] Length = 521 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P +V +F + R Sbjct: 72 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTQVQHLFRRAR 131 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 132 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPAETAPAKRMKRDELDRRTHAVD 187 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 188 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADMRARLLRMIGDPVT 247 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G I+ + + + + + R++ E+ KLL + + Sbjct: 248 RFREDPVRMLRVVRFAAKLG-FEIEENTRAPIKELADLINNVPAARLFDEMLKLLLSGHA 306 Query: 219 LNAIVHMYN 227 L + + Sbjct: 307 LACLRQLRK 315 >gi|119899430|ref|YP_934643.1| poly(A) polymerase [Azoarcus sp. BH72] gi|119671843|emb|CAL95757.1| probable poly(A) polymerase [Azoarcus sp. BH72] Length = 452 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 13/224 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + S+L + K+ +VGGAVRD L+ +D D+AT+ P+ V +F + R Sbjct: 37 SPAARKVCSVLQEHGYKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRALFRRARI--- 93 Query: 72 PTSISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSLRRDFTI 124 + + ++ + +++T R ++ GR + D+ RRDFT+ Sbjct: 94 -IGRRFKIVHVMSGPETIEVSTFRALQDAESAETDEHGRVLRDNVYGSQAEDATRRDFTV 152 Query: 125 NALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 NALY D + ++DY G+ D++ +T++ IGD R ED +R+LR R A G +ID Sbjct: 153 NALYYDPGTETIVDYHHGVADVQQKTLRMIGDPRTRYREDPVRMLRAVRLGAKLG-LSID 211 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 + L+ + + R++ E+ KLL + + + + Sbjct: 212 PAARGPIREMASLLENVPAARLFDEMLKLLLSGYAVKCLRQLRE 255 >gi|89094177|ref|ZP_01167120.1| tRNA nucleotidyl transferase [Oceanospirillum sp. MED92] gi|89081652|gb|EAR60881.1| tRNA nucleotidyl transferase [Oceanospirillum sp. MED92] Length = 370 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 158/388 (40%), Gaps = 33/388 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+N V D D + P+ ++ + + P I T + Sbjct: 2 KIYLVGGAVRDKLLNYPVYDKDWVVVGSSPEEMIESGYQPVGQDFPVFIHPETGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R+++ + Y + D + D +RRD TINA+ D+QG ++D G Sbjct: 57 ---EYALARTEMKSGKGYTGFNYFADKNVTLEEDLVRRDLTINAMAMDEQGSLVDPYDGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL +R ++ + A ED LR+LR RF + Y ++ L+ + L+ Sbjct: 114 KDLADRILRHVSPA---FSEDPLRVLRVARFASRYNHLGFRVAQETLNLMQELALTDELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E + L K+P + ++ K++ +++ Q I E Sbjct: 171 HLTTERVWKEFERALTEKSPWVFLSILHQTKASKKVLPELESWLDTDNWQSI-FRNCCEV 229 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL-SIPEIKKLF 317 ++ +RF L + D K++ + + + + + + + T S P KL Sbjct: 230 SKEADIRFACLSTLADLKNVPAFCDRLRTQKATKELTMQCADHSALLSTFDSQPAETKLE 289 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQD--TCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L G + ++ L +++ T + +L +I + ++K G Sbjct: 290 ILQGLDLFRRPQRLEKILSCVKALYREHSTQSLQPILDEISK-------IDPKQLIKEGY 342 Query: 376 PPGKKVGNILVHCKQEWINSSFQLSQED 403 G +G L ++ I F S D Sbjct: 343 K-GAALGKELTQ-RKLIICEKFSSSSHD 368 >gi|317153261|ref|YP_004121309.1| polynucleotide adenylyltransferase region [Desulfovibrio aespoeensis Aspo-2] gi|316943512|gb|ADU62563.1| Polynucleotide adenylyltransferase region [Desulfovibrio aespoeensis Aspo-2] Length = 901 Score = 225 bits (575), Expect = 9e-57, Method: Composition-based stats. Identities = 90/415 (21%), Positives = 160/415 (38%), Gaps = 24/415 (5%) Query: 14 DLINILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 D + + L + VGG VRD L+ D+D+ R ++ + Sbjct: 480 DFLKVAGELGQDMGWEVYAVGGFVRDILLARPNFDLDLVVEGDAIAYARRLARQLGGRVK 539 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + + T +I + D+ T R + V K D RRDFTINAL Sbjct: 540 AHVKFKTAVVILDDQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTINALALRIN 599 Query: 133 ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGL 187 G+++D+ G D++N+ I+ + +ED RILR RF + + + L Sbjct: 600 PGRFGQLVDFFGAEQDMKNKAIRVLH--SLSFVEDPTRILRAIRFERRFEFQIGGQTLRL 657 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 + + + LS RI E+ ++ +NPL + M GI + I + ++S D++ Sbjct: 658 IKNALSLDLFSKLSGTRIMHELQLIMAEENPLACLNRMQELGIMEAIHP-LLKLSADRVQ 716 Query: 248 QVIEAEQVFEWK---------IDSLLRFIVLISWQDKKSILSMAKKFSL-PREIRYFLIS 297 ++E +V W + L + L + I + + +E R FL Sbjct: 717 VLMELGKVNNWYKLLYLEPRVVPWKLYLLGLTMGIKRDQIGQVTSRLRFTTKEEREFLQL 776 Query: 298 FFNCNFN-QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + +S E K + L+ L L + I Q L+ + Sbjct: 777 RDMIGDALMRLMSWREDKSRLSRLSAILRPIPLEGVLFLMARSRKEHIRRGISQYLTRL- 835 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + ++G D+ + G+ PG ILV + I+ Q ++ L L ++L Sbjct: 836 --RDVTIDVSGTDLQEMGLAPGPAYSAILVRVLEAKIDGRAQTREDQLR-LAKRL 887 >gi|229102239|ref|ZP_04232948.1| CCA-adding enzyme [Bacillus cereus Rock3-28] gi|228681140|gb|EEL35308.1| CCA-adding enzyme [Bacillus cereus Rock3-28] Length = 346 Score = 225 bits (575), Expect = 9e-57, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 145/345 (42%), Gaps = 11/345 (3%) Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINA 126 + +P + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + ++G+++D G ++ R I +G+A +R ED LR++R RF + G ++++ Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAANRFQEDALRMMRGIRFVSTLG-FSLETKT 124 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 A L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLL 183 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 FE I++ F+ I + L +++ + +++ +K Sbjct: 184 KATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRTRK 240 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + L Y G + +++ A N + + + + ++ Sbjct: 241 EKDWDTV--LLYKTGIHIAEMAERVYEA-MIENYNPTSVKRVQSMFHALPIKGRQEMNVS 297 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G+D++ + PG V +L ++ + + +E + L++ Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKESIREWLQR 342 >gi|228984715|ref|ZP_04144887.1| CCA-adding enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774913|gb|EEM23307.1| CCA-adding enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 347 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 71/355 (20%), Positives = 149/355 (41%), Gaps = 15/355 (4%) Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKAD 116 +M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MMGIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEED 56 Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 LKRRDFTMNAIAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVST 116 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 LG-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-P 174 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 +Q L FE I++ F+ I + L +++ + ++ Sbjct: 175 YLQMSEERLLKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIV 231 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + +K + L Y G + +++ A + H + + + Sbjct: 232 AVLLTIRKRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIESYDHTSVNRVQTLFQALP 288 Query: 357 HWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ ++ + + +E + L++ Sbjct: 289 IKSRQEMNVTGNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 343 >gi|85058236|ref|YP_453938.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Sodalis glossinidius str. 'morsitans'] gi|123520219|sp|Q2NWE2|CCA_SODGM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|84778756|dbj|BAE73533.1| tRNA nucleotidyl transferase [Sodalis glossinidius str. 'morsitans'] Length = 415 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 78/344 (22%), Positives = 140/344 (40%), Gaps = 38/344 (11%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L V++ D + P ++ + K P + Sbjct: 4 YLVGGAVRDGLLQLPVKERDWVVVGATPQEMLAQGYQHVGKDFPVFLHP--------DSR 55 Query: 89 FDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + Y + + D RRD TINA+ D +G +ID G D Sbjct: 56 EEYALARTERKSGQGYTGFICYASPEVTLEEDLRRRDLTINAIARDDEGNLIDPYQGQQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSS 202 +R R ++ + DA ED LR+LR RF A + I + + + L +L+ Sbjct: 116 IRQRWLRHVSDA---FGEDPLRVLRVARFAARFAHLNFRIAPETMALMQQMTDELPLLAP 172 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER+W E + L +NP + + G K +F +V + + A + +ID+ Sbjct: 173 ERVWKETERTLATRNPQVYFQVLRDCGALKALFPEVDALF------GVPAPAKWHPEIDT 226 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 + ++ +SMA + + +R+ + C+ K L+ E+ + +G Sbjct: 227 GIHTLM---------TVSMAARLTDDIAVRFATL----CHDVGKALTPRELWPSHHGHGP 273 Query: 323 KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + L N +D I+ D++H + L P T Sbjct: 274 AGVKVVEALCQRLKVPN-PLRDLATIVARYHDLLHGAQSLTPKT 316 >gi|87119772|ref|ZP_01075669.1| tRNA nucleotidyltransferase [Marinomonas sp. MED121] gi|86165248|gb|EAQ66516.1| tRNA nucleotidyltransferase [Marinomonas sp. MED121] Length = 377 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 151/379 (39%), Gaps = 31/379 (8%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L ++D D + T P+ ++ + K+ P + T + Sbjct: 11 YLVGGAVRDELLKLPIKDRDWVVTGATPNDLLSYNFQQVGKLFPVFLHPKTKE------- 63 Query: 89 FDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R+++ G + D RRD TINA+ D G +ID G D Sbjct: 64 -EYALARTEVKKGQGYTGFICDFSPNISLEEDLARRDLTINAIAKDNDGNLIDPYQGQQD 122 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L+NR + + DA +ED LR++R RF A + + ++ L+ I L+ L Sbjct: 123 LKNRIFRHVSDA---FIEDPLRVIRVARFSARFTQFGFKIAPETLALMTKISQSGELESL 179 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ERIW E+ K L NP + + + I D + ++ +++ +A Q + Sbjct: 180 NQERIWRELEKSLSYPNPESFFNVLESCQALDHILADFEWPAVA--ARLKQANQDLLPTL 237 Query: 261 DS-LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 D+ L + + + S + + P + +++ N + E Sbjct: 238 DNKYLVWAYICHQTPPNKLASALDQLTCPNQFKHYANLVSEFMHNTRLPMTAEAW----- 292 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379 D+ + + I +N + +D + + ++ D++K G G Sbjct: 293 --DQWLTSLTAIKKPQVFNEFVKLLSLLTDTCSNDWHDLRSHIASVSAKDMMKQGHK-GA 349 Query: 380 KVGNILVHCKQEWINSSFQ 398 ++G + + + SS Sbjct: 350 ELGQAIKQTRIAKLESSLN 368 >gi|261401213|ref|ZP_05987338.1| multifunctional CCA protein [Neisseria lactamica ATCC 23970] gi|269208792|gb|EEZ75247.1| multifunctional CCA protein [Neisseria lactamica ATCC 23970] Length = 417 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 133/341 (39%), Gaps = 39/341 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFWPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + ++ L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY- 320 S + ++ L A L RY + + K + P+I Y + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHYGHD 271 Query: 321 --GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 G + + + A Y + C + + K Sbjct: 272 INGVEPVREVNRRLRAPKYCAELAELVCRWHIIFHQVGQLK 312 >gi|296313655|ref|ZP_06863596.1| multifunctional CCA protein [Neisseria polysaccharea ATCC 43768] gi|296839795|gb|EFH23733.1| multifunctional CCA protein [Neisseria polysaccharea ATCC 43768] Length = 417 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 125/300 (41%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPKT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 Y + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 55 -YEEYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL+ ++ + A +ED +RILR RF A YG + + ++ L+ + L Sbjct: 114 QDLKAGILRHVSPA---FVEDPVRILRTARFAARYGFEIDEETMKLMRKMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L NP I + G K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMENNPRRMIEVLRECGALKVLLPEV-----DALFGVPQRTD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|258544970|ref|ZP_05705204.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826] gi|258519773|gb|EEV88632.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826] Length = 444 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 152/386 (39%), Gaps = 48/386 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + IL L++ ++ +VGG +RD L+ +D DIAT P+++ IF R Sbjct: 24 DPRALKILRQLDEAGFEAYLVGGCIRDLLLGKQPKDFDIATNARPEQIASIFRNCRL--- 80 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTIN 125 + I + ++ T R+ + G + + D +RRDFTIN Sbjct: 81 -IGRRFRLAHIHFGRYIIEVATFRAPPEREARTDSYGSVLEDNHYGTLEDDVVRRDFTIN 139 Query: 126 ALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D ++ DYVG L+D+ R I+ IGD R ED +R+LR RF A +++ Sbjct: 140 ALYYDSKNDEIRDYVGALDDINRRIIRIIGDPVARYTEDPVRMLRAARFSAKLN-MPLEA 198 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--- 241 D A + + L+ + + R++ E+ KL + + G+F+ +F D ++ Sbjct: 199 DTEAAIVACRDNLRAVPAARLFDEVQKLFMSGYGQTCFDVLQQHGLFEALFPDAEKTIHY 258 Query: 242 ----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISW------------------- 272 ++ +++ E++ K ++ + I W Sbjct: 259 PHAAYAQYAKNMMRIALANTDERIAADKPVTIAFLLAAILWPVYQLQYRGLLKERDNWHS 318 Query: 273 --QDKKSILSMA--KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 + ++ +A ++ ++P +R + + + + I+K+ + A Sbjct: 319 AMHEAIDLVHIAASERVAIPVRLRGMIREIWALQARLEQAARGNIRKMHSVLAHPRFRAA 378 Query: 329 LKIFLALHYNNLTHQDTCFILQVLSD 354 L D + L Sbjct: 379 YDFLLVRQGAGEDLADLVELWTALQQ 404 >gi|88705696|ref|ZP_01103406.1| polyA polymerase [Congregibacter litoralis KT71] gi|88700209|gb|EAQ97318.1| polyA polymerase [Congregibacter litoralis KT71] Length = 403 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 17/236 (7%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 ++ L E ++ +VGGAVRD L+ +D DIAT P+ V +F +R + Sbjct: 1 MARLRDKEHQAYLVGGAVRDLLLGGHPKDFDIATDATPEEVHALFGNSRI----IGRRFR 56 Query: 79 TIKIICRKKYFDITTLRSD-----------LITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + ++ ++TT R + G + + D++RRD T+NAL Sbjct: 57 IVHVRFGREVIEVTTFRGHHDDTEATTGAKRSSRGLLLRDNVFGTLEEDAVRRDLTVNAL 116 Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y D +V D VGGL+DL R ++ IGD R ED +R+LR RF A G N++ Sbjct: 117 YYDSGSFEVFDQVGGLDDLEARQVRVIGDPATRYREDPVRMLRCLRFAAKLG-FNVEKSS 175 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 A + L + R++ E KL N + + F+ +F D ++ Sbjct: 176 GAAIPRLAALLDDIPPARLFDEFGKLFLTGNAQATLRLLREYRCFEHLFPDSARLA 231 >gi|237802835|ref|YP_002888029.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT] gi|231274069|emb|CAX10863.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT] Length = 425 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 20/306 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 45 HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC----ILV 100 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + I + ++ T RS D K + D LRRDFTIN L+ D Sbjct: 101 GKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS 160 Query: 133 -GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 G +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 161 AGIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEALQ 219 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 ++ L S R++ EI K+L + + + +F + + LS+ ++ Sbjct: 220 ESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAF--SLSKTLQ 277 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F L + K S + I F I FN + Sbjct: 278 DQT-----------FACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTM 326 Query: 312 EIKKLF 317 I+ +F Sbjct: 327 TIQSIF 332 >gi|152995078|ref|YP_001339913.1| polynucleotide adenylyltransferase region [Marinomonas sp. MWYL1] gi|150836002|gb|ABR69978.1| Polynucleotide adenylyltransferase region [Marinomonas sp. MWYL1] Length = 365 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 80/381 (20%), Positives = 149/381 (39%), Gaps = 41/381 (10%) Query: 27 DKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 + +VGGAVRD+L+ L V D D + T P+++ + + K P + I + Sbjct: 5 YQVYLVGGAVRDALLELPVIDHDWVVTGATPEQLEKKGFQQVGKQFPVFLHP-----ISK 59 Query: 86 KKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGG 141 ++Y R + G + D RRD TINA+ DQ G +ID G Sbjct: 60 EEY---ALARKEKKQGEGYTGFICDFSPEISLEEDLERRDLTINAIAQDQNGTLIDPFNG 116 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL +R + + +A +ED LR+LR RF A + ++ L+ I + L Sbjct: 117 QQDLLDRVFRHVSNA---FVEDPLRVLRVARFAARFHHFGFTIAPETMSLMREISSSGEL 173 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV----QEISLDQLSQVIEAE 253 LS+ERIW E+ K L ++ + + ++F + ++ D L+QV Sbjct: 174 SALSAERIWKELEKALNTRHANVFFSVLKDANALDKLFPEFIWEDSQMLTDILNQV---- 229 Query: 254 QVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 + R+ +L + + ++ P + + + NQ Sbjct: 230 -----GLTPAQRWAILCKNTPLTELTQLHQRIRSPNQFKILAEQTRSFLENQHIPMDSTT 284 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 + + + + + + I L + LT+ ++ I + ++K Sbjct: 285 WENWLISVNAIKKPQPFILLIAILSRLTNSKVEDWQKLRDTIA-------VINAASLIKQ 337 Query: 374 GIPPGKKVGNILVHCKQEWIN 394 G G ++G L + E ++ Sbjct: 338 GFS-GAELGQALKKVRTEALD 357 >gi|154707640|ref|YP_001425127.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111] gi|154356926|gb|ABS78388.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111] Length = 439 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 136/330 (41%), Gaps = 32/330 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L L+K ++ +VGG VRD L++ +D DIAT P + ++F +R Sbjct: 39 SPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARPHEIRKLFKNSRL--- 95 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT--------------DGRYAKVVFTRDWKADS 117 + + + + +++T R++ ++ + D+ Sbjct: 96 -IGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSEDNTYGTIEEDA 154 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NALY + VID+ GG+ DL R I+ IGD R ED +R+LR R A Sbjct: 155 RRRDFTVNALYYNITDFSVIDFTGGMRDLHRRLIRMIGDPTQRYHEDPVRLLRAIRLAAK 214 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + I D K L+ + S R+++E+ K+ + + + + + +F Sbjct: 215 L-DFKIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFP 273 Query: 237 DVQEI----------SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 + I +L +L+ E+ + + + W + + M + F Sbjct: 274 EAATILEKTRQPLYENLIKLALKATDERFHNQQSLNPGFLFAIFLWPPVQEL--MQQHFK 331 Query: 287 LPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 + + L N ++ +P ++L Sbjct: 332 KHKRLFPALYHGINTALQRQVTILPLPRRL 361 >gi|117619276|ref|YP_858232.1| multifunctional CCA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166233839|sp|A0KPN1|CCA_AERHH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|117560683|gb|ABK37631.1| multifunctional CCA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 412 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 142/348 (40%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L D D + ++++ + + P + T + Sbjct: 2 QTYLVGGAVRDRLLGLPQGDRDHLVVGATVEQMLALGFTQVGRDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y V + D LRRD T+NA+ D+ G++ D GG+ Sbjct: 57 ---EYALARTERKQGRGYTGFVCHASPEVTLEQDLLRRDLTVNAIAEDEAGQLHDPYGGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+ R ++ + A ED LRILR RF A + + ++ L+ + L Sbjct: 114 EDLKQRLLRHVSPA---FAEDPLRILRVARFAARFHAQGFVVAPETLALMREMTEAGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E+ K+L P + G +F ++ + + A + Sbjct: 171 HLTPERVWKELEKVLLGPTPQVFFEVLRECGALAALFPELDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L+ A + S +R+ + C+ K L+ PE + Sbjct: 225 EIDTGIHTMM---------VLAQACRLSPELAVRFAAL----CHDFGKGLTPPEFWPSHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G K + ++ F +D ++ L IH L P T Sbjct: 272 GHGQKGLP-LIRDFCERFRAPNECRDLALLVSDLHTHIHIAFELKPAT 318 >gi|229096127|ref|ZP_04227100.1| CCA-adding enzyme [Bacillus cereus Rock3-29] gi|229115083|ref|ZP_04244493.1| CCA-adding enzyme [Bacillus cereus Rock1-3] gi|228668223|gb|EEL23655.1| CCA-adding enzyme [Bacillus cereus Rock1-3] gi|228687087|gb|EEL40992.1| CCA-adding enzyme [Bacillus cereus Rock3-29] Length = 346 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 145/345 (42%), Gaps = 11/345 (3%) Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINA 126 + +P + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + ++G+++D G ++ R I +G+A +R ED LR++R RF + G ++++ Sbjct: 66 IAMTEEGEMVDLFAGQEAIQKREIVTVGNAANRFQEDALRMMRGIRFVSTLG-FSLETKT 124 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 A L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PYLQMSEERLL 183 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 FE I++ F+ I + L +++ + +++ +K Sbjct: 184 KATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRTRK 240 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + L Y G + +++ A N + + + + ++ Sbjct: 241 EKDWDTV--LLYKTGIHIAEMAERVYEA-MIENYNPTSVKRVQSMFHALPIKGRQDMNVS 297 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G+D++ + PG V +L ++ + + +E + L++ Sbjct: 298 GNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKESIREWLQR 342 >gi|90411906|ref|ZP_01219914.1| putative tRNA nucleotidyltransferase [Photobacterium profundum 3TCK] gi|90327164|gb|EAS43536.1| putative tRNA nucleotidyltransferase [Photobacterium profundum 3TCK] Length = 411 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 137/343 (39%), Gaps = 53/343 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L V D D P++++ + P + T + Sbjct: 2 QTYLVGGAVRDALLGLKVVDKDWMVVGATPEQMLDQGYEQVGSDFPVFLHPKTKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + + D +RRD TINA+ G++ID G Sbjct: 57 ---EYALARTERKSGKGYTGFICYSAPDVTLEQDLMRRDLTINAIAQKNDGRLIDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL N+ ++ + A +ED LR+LR RF A + ++ L+ + L+ Sbjct: 114 QDLDNKILRHVSPA---FVEDPLRVLRVARFSARFAHLGFTIAPETIALMQEMVVAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ--------- 248 L+ ER+W E K L +NP + + G K + ++ + + Q +Q Sbjct: 171 ALTPERVWKEWEKSLSTENPEVFLTVLRQCGALKVVMPEIDALFGVPQPAQWHPEIDCGI 230 Query: 249 --VIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ A+Q E + ++RF I K K I ++ ++ + Sbjct: 231 HTLMVAKQAAELSPNKVIRFAAQIHDLGKALSPKDDLPSHKMHCKDGLKPIKALCQRLRV 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLK 330 P + R + C + K E++ ++ + + K Sbjct: 291 PNDYRDT--ALMVCAQHTKIHHANEMRPATFINILDQIDSWRK 331 >gi|145630989|ref|ZP_01786765.1| tRNA nucleotidyltransferase [Haemophilus influenzae R3021] gi|144983456|gb|EDJ90932.1| tRNA nucleotidyltransferase [Haemophilus influenzae R3021] Length = 261 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 115/253 (45%), Gaps = 26/253 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T + Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKTKE----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ G T + D +RRD TINA+ + G++ID GG Sbjct: 57 ---EYALARTERKAGAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLK 198 DL NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ Sbjct: 114 QDLENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELAQSGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L KNP ++ G +F ++ D L V + Sbjct: 171 HLTAERVWLETEKALNEKNPEIYFETLHKTGALSVLFPEI-----DALYGVPNPVK-HHP 224 Query: 259 KIDSLLRFIVLIS 271 ++DS + ++++ Sbjct: 225 EVDSFIHTMLVLK 237 >gi|228945235|ref|ZP_04107591.1| CCA-adding enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814470|gb|EEM60735.1| CCA-adding enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 346 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 71/354 (20%), Positives = 148/354 (41%), Gaps = 15/354 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF K +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPKH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSSL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + H + + + Sbjct: 232 VLLTIRKRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIESYDHTSVERVQTLFQALPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ ++ + + +E + L++ Sbjct: 289 KSRQEMDVTGNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342 >gi|62185370|ref|YP_220155.1| putative poly(A) polymerase [Chlamydophila abortus S26/3] gi|62148437|emb|CAH64205.1| putative poly(A) polymerase [Chlamydophila abortus S26/3] Length = 428 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 73/259 (28%), Positives = 122/259 (47%), Gaps = 11/259 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 42 SPHALSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC----I 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYAD 130 + I + +++T RS + K + D LRRDFTIN L+ D Sbjct: 98 LVGKRFRLAHIRFSNQIIEVSTFRSGSADEDCLITKDNLWGTAEEDVLRRDFTINGLFYD 157 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L A Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILAR-AHFTVDPKTLEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + + L S R++ E+ K+L + I + +F + + +L++ Sbjct: 217 LQECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPYMDKAF--RLNKT 274 Query: 250 IEAEQVFEWKIDSLLRFIV 268 +E EQ F +D L R IV Sbjct: 275 LE-EQTFA-CLDVLDRHIV 291 >gi|22127403|ref|NP_670826.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis KIM 10] gi|45442728|ref|NP_994267.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis biovar Microtus str. 91001] gi|108809131|ref|YP_653047.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis Antiqua] gi|108810675|ref|YP_646442.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis Nepal516] gi|145597744|ref|YP_001161820.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis Pestoides F] gi|150260318|ref|ZP_01917046.1| tRNA nucleotidyltransferase [Yersinia pestis CA88-4125] gi|162420327|ref|YP_001604913.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis Angola] gi|165924844|ref|ZP_02220676.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939885|ref|ZP_02228424.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009040|ref|ZP_02229938.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212241|ref|ZP_02238276.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398461|ref|ZP_02303985.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418788|ref|ZP_02310541.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425148|ref|ZP_02316901.1| multifunctional CCA protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470407|ref|ZP_02335111.1| multifunctional CCA protein [Yersinia pestis FV-1] gi|218927843|ref|YP_002345718.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis CO92] gi|229837329|ref|ZP_04457492.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis Pestoides A] gi|229840541|ref|ZP_04460700.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842911|ref|ZP_04463063.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis biovar Orientalis str. India 195] gi|229900869|ref|ZP_04515993.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis Nepal516] gi|270487756|ref|ZP_06204830.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis KIM D27] gi|294502720|ref|YP_003566782.1| tRNA nucleotidyltransferase [Yersinia pestis Z176003] gi|73619909|sp|Q8ZI64|CCA_YERPE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|122382757|sp|Q1C370|CCA_YERPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|122385242|sp|Q1CMD8|CCA_YERPN RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|166233892|sp|A4THT5|CCA_YERPP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702097|sp|A9R7D9|CCA_YERPG RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|21960492|gb|AAM87077.1|AE013956_2 tRNA nucleotidyl transferase [Yersinia pestis KIM 10] gi|45437594|gb|AAS63144.1| tRNA nucleotidyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|108774323|gb|ABG16842.1| tRNA nucleotidyltransferase [Yersinia pestis Nepal516] gi|108781044|gb|ABG15102.1| tRNA nucleotidyltransferase [Yersinia pestis Antiqua] gi|115346454|emb|CAL19327.1| tRNA nucleotidyltransferase [Yersinia pestis CO92] gi|145209440|gb|ABP38847.1| tRNA nucleotidyltransferase [Yersinia pestis Pestoides F] gi|149289726|gb|EDM39803.1| tRNA nucleotidyltransferase [Yersinia pestis CA88-4125] gi|162353142|gb|ABX87090.1| multifunctional CCA protein [Yersinia pestis Angola] gi|165912196|gb|EDR30834.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923044|gb|EDR40195.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992379|gb|EDR44680.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206987|gb|EDR51467.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962782|gb|EDR58803.1| multifunctional CCA protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050965|gb|EDR62373.1| multifunctional CCA protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055911|gb|EDR65692.1| multifunctional CCA protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682208|gb|EEO78300.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis Nepal516] gi|229690178|gb|EEO82235.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis biovar Orientalis str. India 195] gi|229696907|gb|EEO86954.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705452|gb|EEO91462.1| multifunctional tRNA nucleotidyl transferase, 2'3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase [Yersinia pestis Pestoides A] gi|262364697|gb|ACY61254.1| tRNA nucleotidyltransferase [Yersinia pestis D182038] gi|270336260|gb|EFA47037.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pestis KIM D27] gi|294353179|gb|ADE63520.1| tRNA nucleotidyltransferase [Yersinia pestis Z176003] gi|320016790|gb|ADW00362.1| Methenyltetrahydrofolate cyclohydrolase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 412 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 155/357 (43%), Gaps = 51/357 (14%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRDSL+NL V + D + P++++++ + K P + + ++Y Sbjct: 4 YLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVFLHP-----VSHEEY 58 Query: 89 FDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R S G + D LRRD T+NA+ G+ ID G DL N Sbjct: 59 ALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLEN 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + DA ED LR+LR RF A + ++ L++++ L L+ E Sbjct: 119 RVLRHVSDA---FGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E K L+ ++P + + G +F +++ + + A + + +ID+ Sbjct: 176 RVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLF------GVPAPEKWHPEIDTG 229 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD- 322 + ++ L++A + S +IR+ + C+ K L+ E + +G Sbjct: 230 IHTLM---------TLAIAAQLSPEVDIRFAAL----CHDLGKGLTPKEHWPHHHGHGPA 276 Query: 323 -----KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L+I L Y++L H +L++ + I W+KP Sbjct: 277 GVKLVEQLCQRLRIPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPE 333 >gi|300115235|ref|YP_003761810.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nitrosococcus watsonii C-113] gi|299541172|gb|ADJ29489.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Nitrosococcus watsonii C-113] Length = 403 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 70/343 (20%), Positives = 133/343 (38%), Gaps = 37/343 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ V++ D + P ++ + K P + T + Sbjct: 2 ETYLVGGAVRDKLLGRPVKERDYVVVGTTPAHLLAQGYRPVGKDFPVFLHPQTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D RRD TINA+ G ++D GG Sbjct: 57 ---EYALARTERKTGPGYKGFEVHATPDVTLEEDLQRRDLTINAIAEAADGSLLDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A + K ++ L+ ++ L Sbjct: 114 QDLARGILRHVSPA---FAEDPVRILRAARFAARFDFKVAPETLALMEAMVTAGEADHLV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E+ + L P + G IF +++ + I + + +ID Sbjct: 171 PERVWKELERALGESYPRRFFEILRACGALARIFPEIECLF------GIPQPRRYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + + +L +A S ++R+ ++ + K + P Y +G Sbjct: 225 TGIHTL---------KVLEIATHLSSDTQVRFAALT----HDLGKGQTPPHEWPHHYDHG 271 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 ++ + L + L +Q + +++H + L P Sbjct: 272 ERGVALVLTLCQRLRIPK-AYQALAVQVARYHNLVHQAQELRP 313 >gi|229155201|ref|ZP_04283313.1| CCA-adding enzyme [Bacillus cereus ATCC 4342] gi|228628328|gb|EEK85043.1| CCA-adding enzyme [Bacillus cereus ATCC 4342] Length = 347 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 71/355 (20%), Positives = 148/355 (41%), Gaps = 15/355 (4%) Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKAD 116 +M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MMGIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEED 56 Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 LKRRDFTMNAIAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVST 116 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 LG-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-P 174 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 +Q L FE I++ F+ I + L +++ + ++ Sbjct: 175 YLQMSEERLLKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIV 231 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + +K + L Y G + +++ A + H + + + Sbjct: 232 AVLLTIRKRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIESYDHTSVNRVQTLFQALP 288 Query: 357 HWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ + + + +E + L++ Sbjct: 289 IKSRQEMNVTGNDLLNWASKKPGPWVAEMIQKIEAAIVQGNVVNEKECIREWLQE 343 >gi|229172273|ref|ZP_04299837.1| CCA-adding enzyme [Bacillus cereus MM3] gi|228611261|gb|EEK68519.1| CCA-adding enzyme [Bacillus cereus MM3] Length = 346 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 145/345 (42%), Gaps = 11/345 (3%) Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADSLRRDFTINA 126 + +P + +GT+ ++ + +++TT R++ D R V F R + D RRDFT+NA Sbjct: 6 RHVPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDLKRRDFTMNA 65 Query: 127 LYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + ++GK++D G ++ R I +G+A R ED LR++R RF + G +++ Sbjct: 66 IAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTLG-FSLEMKT 124 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQL 246 A L+ ++ ERI E KLL + + + +F + +Q L Sbjct: 125 KQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKLFSHL-PYLQMSEERLL 183 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + FE I++ F+ I + L +++ + +++ +K Sbjct: 184 KAMQYNWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVAVLLTIRTRK 240 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + L Y G + +++ A + H + + + + +T Sbjct: 241 EKDWDTV--LLYKTGLHIAEMAERVYEA-MIESYDHTSVKRVQTLFEALPIKSRQEMNVT 297 Query: 367 GDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G+D++ + PG V ++ ++ + + +E + L++ Sbjct: 298 GNDLLSWANKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342 >gi|32033553|ref|ZP_00133880.1| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208391|ref|YP_001053616.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae L20] gi|190150244|ref|YP_001968769.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251226|ref|ZP_07337404.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307245829|ref|ZP_07527915.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247905|ref|ZP_07529940.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250159|ref|ZP_07532119.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252542|ref|ZP_07534438.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254802|ref|ZP_07536629.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307263583|ref|ZP_07545198.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166233838|sp|A3N0S5|CCA_ACTP2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702031|sp|B3GXR2|CCA_ACTP7 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|126097183|gb|ABN74011.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915375|gb|ACE61627.1| Multifunctional CCA protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649768|gb|EFL79946.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853531|gb|EFM85750.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855596|gb|EFM87764.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857824|gb|EFM89920.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860134|gb|EFM92151.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862328|gb|EFM94295.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306871226|gb|EFN02955.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 411 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 53/362 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+NL V+D D + P++++ + P + T + Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R + +G + D +RRD TINA+ D G++ D GG Sbjct: 57 ---EYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLK 198 DL NR ++ I A ED LR+LR RF A + G K ++ L+ + A L Sbjct: 114 QDLANRLLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K NP + G +F + D+L V + EQ Sbjct: 171 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPE-----FDRLFGVPQPEQ-HHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +IDS + ++ ++ AK+ + E L+ C+ K L+ +I Y Sbjct: 225 EIDSGVHTLL---------VIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHY 275 Query: 319 LYG------DKVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKK 360 + + + +LK+ + H + + +L+V + + W+K Sbjct: 276 GHEVKGVKPARELSNRLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRK 335 Query: 361 PL 362 P Sbjct: 336 PQ 337 >gi|167618800|ref|ZP_02387431.1| polyA polymerase [Burkholderia thailandensis Bt4] Length = 488 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 39 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 98 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLIT--------------------------- 100 + + + ++ +++T R+ + T Sbjct: 99 L----IGRRFQIVHVQFGQELIEVSTFRALVDTPQEPPADAAPAKRLKRDELDRRTHAVD 154 Query: 101 -DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 155 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 214 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 215 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 273 Query: 219 LNAIVHMYN 227 L + + Sbjct: 274 LACLKQLRK 282 >gi|83719048|ref|YP_441861.1| polyA polymerase [Burkholderia thailandensis E264] gi|257138030|ref|ZP_05586292.1| polyA polymerase [Burkholderia thailandensis E264] gi|83652873|gb|ABC36936.1| polyA polymerase [Burkholderia thailandensis E264] Length = 514 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLIT--------------------------- 100 + + + ++ +++T R+ + T Sbjct: 125 L----IGRRFQIVHVQFGQELIEVSTFRALVDTPQEPPADAAPAKRLKRDELDRRTHAVD 180 Query: 101 -DGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 181 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 240 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 241 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 299 Query: 219 LNAIVHMYN 227 L + + Sbjct: 300 LACLKQLRK 308 >gi|302036512|ref|YP_003796834.1| hypothetical protein NIDE1150 [Candidatus Nitrospira defluvii] gi|300604576|emb|CBK40908.1| conserved protein of unknown function, putative Phosphoesterase and Polynucleotide adenylyltransferase [Candidatus Nitrospira defluvii] Length = 891 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 79/414 (19%), Positives = 145/414 (35%), Gaps = 37/414 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L L + + +VGG VRD L+ + D+D R +K R + Sbjct: 477 LQTAGELSERLGYSAYVVGGFVRDLLLGIDNLDVDFVVEGDGIAFARALAKERAGRVKVH 536 Query: 75 ISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ- 132 +GT ++ D+ T R++ V K D RRDFTIN L Sbjct: 537 ERFGTAVVLLPDGFKVDVATARTEYYEYPTALPTVEQSSIKKDLYRRDFTINTLAVRLNP 596 Query: 133 ---GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLV 188 G++ID+ GG DL+ R I+ + +ED R+ R RF + + ++ L+ Sbjct: 597 RAFGQLIDFYGGQRDLKERLIRVLH--SLSFVEDPTRVFRAIRFELRFDFHLSKETLALI 654 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-EISLDQLS 247 + LS +R+ E+ L + P +A+ + + + + I + LD+ Sbjct: 655 KGAVKMELFHRLSGQRLLDELRYLFSERTPRHAVRRLADLDLLRFIHPTLTWSNRLDR-- 712 Query: 248 QVIEAEQVFEWKIDS---------LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 ++ E E EW S L+ + L +++ M ++F R + + Sbjct: 713 RLSEVEAALEWYKLSCLDRHISGWLVYAMALTEAMPDQAVHEMLERFPFTEAERGAITAA 772 Query: 299 F-------NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV 351 + L + L D+ ++ L + + Sbjct: 773 RFLTQPVCRALSRRAPLRPSDTVALLAGLADETLVFLLA----------KNASASAKRHL 822 Query: 352 LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH 405 + ++ LTG + G PG IL ++ + E+ Sbjct: 823 SLYLTTYRDVKPALTGKSLQALGFRPGPLYRTILERLTTARLDGDVKTEAEERE 876 >gi|228914211|ref|ZP_04077827.1| CCA-adding enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926666|ref|ZP_04089735.1| CCA-adding enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932924|ref|ZP_04095789.1| CCA-adding enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826727|gb|EEM72496.1| CCA-adding enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833042|gb|EEM78610.1| CCA-adding enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845415|gb|EEM90450.1| CCA-adding enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 346 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 70/354 (19%), Positives = 148/354 (41%), Gaps = 15/354 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + H + + + Sbjct: 232 VLLTIRKRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIESYDHTSVERVQTLFQALPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ ++ + + +E + L++ Sbjct: 289 KSRQEMDVTGNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342 >gi|29840548|ref|NP_829654.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC] gi|29834898|gb|AAP05532.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC] Length = 428 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 10/248 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 42 SPHALSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC----I 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYAD 130 + I + +++T RS + K + D LRRDFTIN L+ D Sbjct: 98 LVGKRFRLAHIRFSNQIIEVSTFRSGSADEDYLITKDNLWGTAEEDVLRRDFTINGLFYD 157 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL+NR ++ IGD R +D +R+LR + A +D L A Sbjct: 158 PAEETIIDYTGGVSDLQNRYLRTIGDPFVRFKQDPVRMLRLLKILAR-ASFTVDPKTLEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQV 249 + + L + R++ E+ K+L + + + +F + + +L++ Sbjct: 217 LQECRYELVKSAPARVFEELIKMLGSGASSEFFKLTVKYQMLEILFPYMDKAF--RLNKT 274 Query: 250 IEAEQVFE 257 +E EQ F Sbjct: 275 LE-EQTFS 281 >gi|291276560|ref|YP_003516332.1| putative poly(A) polymerase [Helicobacter mustelae 12198] gi|290963754|emb|CBG39589.1| putative poly(A) polymerase [Helicobacter mustelae 12198] Length = 379 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 94/406 (23%), Positives = 164/406 (40%), Gaps = 35/406 (8%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 ++ I +L ++ ++GG VRD L+++ D D A + P + I Sbjct: 6 ENVQKIFEILR--GEEIYLIGGCVRDMLLSIKPLDYDFACVLRPQILRDKLHANGIATID 63 Query: 73 TSISYGTIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYAD 130 I YGT+ ++ + ++ITT R + + D R+ V F + D RRDF+INA+ Sbjct: 64 VGIRYGTLGVLLEGEVYEITTFRKEGVYLDARHPSSVEFAKSLAEDVRRRDFSINAIAYH 123 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +G ++D VGG+ DL + ++ IGDA R ED LRILR F A +G + +S+ A Sbjct: 124 PKGGIVDLVGGVQDLEDGVLRAIGDAQMRFFEDSLRILRGVGFVARFG-LHAESNTYSAM 182 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + L L ERI E K++ A L A+ G+F +F + + +L + Sbjct: 183 LSFAHLLDSLPRERISKEWEKIICAPFCLRALKEFA--GVFVPLFGESFASHVCRLKDL- 239 Query: 251 EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 D+ L I + ++ P+ R + + Sbjct: 240 ---------PDNPLHRAAKILQDE-----ALLDALCYPKAARGQIAQMMQWCKKDVFVDK 285 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 +K + K ++IFL ++ ++L+ + + +D+ Sbjct: 286 KSLKYVL----AKNPWDLVRIFL------QGDARLAWLEEILAKGEPCRIKDLCIHANDL 335 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 ++ P K G IL E I +DL R+ S + Sbjct: 336 EEF---PPKFRGKILSFLLSEVIEERVANESKDLKCHARQYYKSLE 378 >gi|225850507|ref|YP_002730741.1| poly A polymerase [Persephonella marina EX-H1] gi|225645716|gb|ACO03902.1| poly A polymerase [Persephonella marina EX-H1] Length = 865 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 81/410 (19%), Positives = 161/410 (39%), Gaps = 25/410 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 +L I + + ++ +VGG VRD +M DIDI +++ ++K Sbjct: 462 ELKKIGVIAKRSGFRAYLVGGIVRDIVMKRKNLDIDIIVEGDAIELVKKYAKENNYRYYY 521 Query: 74 SISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--- 129 + T ++ D T R ++ V K D RRDFTIN L Sbjct: 522 FEEFMTAQVTLPSGLKIDFATARKEIYEYPGAYPKVRKASIKEDLYRRDFTINTLAIEIT 581 Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGL 187 D G +ID+ GL D++++ I+ + +ED +RILR RF +G K ++ L Sbjct: 582 EDNFGTLIDFFNGLRDIKDKVIRILH--QLSFIEDPVRILRAVRFAGRFGFKIGKMTERL 639 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV-----QEIS 242 + + L + + R+ +E++ + I M I ++ + +E Sbjct: 640 LKLAVDENLLLVAPTGRVNTELSYSFNEEKATEIIYLMNRYKILHQLIPEFVFDDKREEV 699 Query: 243 LDQLSQVI-EAEQVFEWKIDSLL-RFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 +++L +I E F K+D + + L+ +++ + F + F Sbjct: 700 INRLRDMIVTFEIFFGHKVDRVANYLLALMYHLPLDISYQFLERYHFSNGKQLFKLFFSV 759 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 +K IPE Y+ + L + ++ + ++ + ++ Sbjct: 760 KGRFRK---IPEKNSELYMIIKNIKKDVLVFLCSYLPAEISER-------IIYILKKEEE 809 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +TG+D+ + G+ P IL ++++ + +E L +L K Sbjct: 810 RKLLITGNDLKELGLKPSPLFKEILDEIFLKYLDGEIKNRREALEYLKNK 859 >gi|210633527|ref|ZP_03297796.1| hypothetical protein COLSTE_01712 [Collinsella stercoris DSM 13279] gi|210159122|gb|EEA90093.1| hypothetical protein COLSTE_01712 [Collinsella stercoris DSM 13279] Length = 452 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 88/452 (19%), Positives = 164/452 (36%), Gaps = 65/452 (14%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 L +L ++ IVGG VRD+LM DIDI + ++ V+ + + +G Sbjct: 2 LRVLESAGLEAWIVGGWVRDALMCAPGHDIDICCSGSWEQSAAALRAEGIAVVESGVKFG 61 Query: 79 TIKIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVI 136 I + + ++T R D TDGR+ + V + + D RRDFT+NA+ + ++ Sbjct: 62 GITAVLDGERIEVTAYRLDGFYTDGRHPESVRRAQCVEEDLARRDFTVNAMAWHPRRGLL 121 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D G DL R I+ +G+ R ED LR+LR RF + ++D+ A Sbjct: 122 DLYDGRGDLERRQIRAVGEPRRRFEEDALRMLRAVRFACRL-DFSMDAATASALDSCAPL 180 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L ++ ER+ E+ +L +A+ + + ++ + A V+ Sbjct: 181 LDAVARERVGIELEGILVTGRGGDAL--LRYPELMCAAIPELARMRGFNQRTPYHAFDVY 238 Query: 257 EW-----------------------KIDSLLRFIVLISWQDKKS---------------- 277 E L + L+ K Sbjct: 239 EHTARVLTVAGELSRFRIDGGDPDAPPSPSLMWAALLHDVAKPDTFTVDERGRGHFYGHP 298 Query: 278 ------ILSMAKKFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK 328 ++ ++ S ++ LI + + + + + + + F G V Sbjct: 299 ERGAARAKAIMRRLSCGNDLMRDVNLLIRYHDQPLRPERVDLLRMMQRFASGGVDVPRLM 358 Query: 329 LKIFLALHYNNLTHQDTCF------------ILQVLSDIIHWKKPLFPLTGDDVVKYGIP 376 ++F + L CF + +++++ + LTG D++ +G+ Sbjct: 359 GELFDLKRADTLGKASQCFYYVDEIERMREMVRELIANGEAYSVKTLNLTGKDLIAHGMA 418 Query: 377 PGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 PG +VG L + I S L L Sbjct: 419 PGPQVGAALNRALEGAIVGEVPNSTLHLLTYL 450 >gi|78065319|ref|YP_368088.1| Poly(A) polymerase, PcnB [Burkholderia sp. 383] gi|77966064|gb|ABB07444.1| Poly(A) polymerase, PcnB [Burkholderia sp. 383] Length = 512 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 33/248 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD---- 101 + + + ++ +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAAAEPPKRLKRDELDRRTHAVDA 180 Query: 102 -GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHR 159 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 181 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR 240 Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 ED +R+LR RF A G I+ + + + R++ E+ KLL + + L Sbjct: 241 FREDPVRMLRVVRFAAKLG-FEIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHAL 299 Query: 220 NAIVHMYN 227 + + Sbjct: 300 ACLTQLRK 307 >gi|255348775|ref|ZP_05380782.1| polyA polymerase [Chlamydia trachomatis 70] gi|255503315|ref|ZP_05381705.1| polyA polymerase [Chlamydia trachomatis 70s] gi|255506994|ref|ZP_05382633.1| polyA polymerase [Chlamydia trachomatis D(s)2923] gi|289525452|emb|CBJ14929.1| polyA polymerase [Chlamydia trachomatis Sweden2] gi|296435004|gb|ADH17182.1| polyA polymerase [Chlamydia trachomatis E/150] gi|296438724|gb|ADH20877.1| polyA polymerase [Chlamydia trachomatis E/11023] Length = 425 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 76/306 (24%), Positives = 128/306 (41%), Gaps = 20/306 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 45 HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC----ILV 100 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + I + ++ T RS D K + D LRRDFTIN L+ D Sbjct: 101 GKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS 160 Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 161 AEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEALQ 219 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 +++ L S R++ EI K+L + + + +F + + LS+ ++ Sbjct: 220 ESRHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAF--SLSKTLQ 277 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F L + K S + I F I FN + Sbjct: 278 DQT-----------FACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTM 326 Query: 312 EIKKLF 317 I+ +F Sbjct: 327 TIQSIF 332 >gi|206890724|ref|YP_002249348.1| polyA polymerase family protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742662|gb|ACI21719.1| polyA polymerase family protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 874 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 99/430 (23%), Positives = 168/430 (39%), Gaps = 34/430 (7%) Query: 8 KWFHDSDLINILS----LLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 K F ++ IL L + + +VGG VRD LM DIDI Sbjct: 451 KEFLSEEVYEILRIAGNLAEEMGSGAYLVGGTVRDLLMRRPSPDIDIVVEGDGIAFAHEL 510 Query: 64 SKTRYKVIPTSISYGTIKII--------CRKKYFDITTLRSDLITDGRYAKVVFTRDWKA 115 +K + + T KI+ ++ Y DI T R++ V T K Sbjct: 511 AKKIDGKVTPHPRFATAKILKEIKKDGEIKRFYIDIATARTEYYESPAALPKVETSSIKK 570 Query: 116 DSLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFF 171 D RRDFTINAL G +ID+ GG D++++ I+ + + +ED R +R Sbjct: 571 DLYRRDFTINALAVKLNTKDFGLLIDFFGGQRDIKDKKIRVLHN--LSFVEDPTRAIRAI 628 Query: 172 RFFAHYGEKN-IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 RF G K ++ L+ + L R++ E+ LL+ P ++I + + G+ Sbjct: 629 RFSEKLGFKISKHTENLIKLAVKMNIFEKLKGPRLYEELILLLKETLPHHSIKRLGDYGL 688 Query: 231 FKEIFLDVQEISL-DQLSQVIEAEQVFEWKI------DSLLRFIVLISWQDKKSILSMAK 283 K I ++E ++ + L++ E Q E + +V++ + + Sbjct: 689 LKLIHPAIEERTIYNDLAKAYETIQGIELLFLKEEYRKEFIYLMVILWNLNLSEREELLH 748 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF--YLYGDKVMIAKLKIFLALHYNNLT 341 + P I+ LI + L E + F +Y + I L + Y Sbjct: 749 RICAPVNIKRELIENISSAQKALQLFTAENSQEFNVQIYNLLKPLNIETIILMMIYAKEW 808 Query: 342 HQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 + F + + K +TG+D+ K GI PG IL +E + LS+ Sbjct: 809 QKKAIF-----NYLTKLKDIKPLITGEDLKKLGIQPGPVYRKILESILREKLQGRL-LSK 862 Query: 402 EDLHHLLRKL 411 E+ +K+ Sbjct: 863 EEEIEFAKKI 872 >gi|229069188|ref|ZP_04202479.1| CCA-adding enzyme [Bacillus cereus F65185] gi|228713940|gb|EEL65824.1| CCA-adding enzyme [Bacillus cereus F65185] Length = 346 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 147/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQRKIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLEMKTKQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYKWDSFETDIEAWAFFLYCIGEEHPAVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A+ + L + I Sbjct: 232 VLLAIRTRKEKDWDTV--LLYKTGIHIAEMAERVYEAMIESYDPTSVERVQLMFHALPIQ 289 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 290 -ERQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341 >gi|307256971|ref|ZP_07538748.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864546|gb|EFM96452.1| Phosphatase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 411 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 53/362 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+NL V+D D + P++++ + P + T + Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R + +G + D +RRD TINA+ D G++ D GG Sbjct: 57 ---EYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLK 198 DL NR ++ I A ED LR+LR RF A + G K ++ L+ + A L Sbjct: 114 QDLANRLLRHISPA---FSEDPLRVLRVARFAARFHSLGFKIAPETVKLMQEMTACGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K NP + G +F + D+L V + EQ Sbjct: 171 HLTAERVWLETQKAFATDNPQIYFEVLREIGALAVLFPE-----FDRLFGVPQPEQ-HHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +IDS + ++ ++ AK+ + E L+ C+ K L+ +I Y Sbjct: 225 EIDSGVHTLL---------VIEQAKRLAKNAENPTALLWAALCHDLGKGLTEKDILPHHY 275 Query: 319 LYG------DKVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKK 360 + + + +LK+ + H + + +L+V + + W+K Sbjct: 276 GHEVKGVKPARELSNRLKVSTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDIWRK 335 Query: 361 PL 362 P Sbjct: 336 PQ 337 >gi|51597709|ref|YP_071900.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pseudotuberculosis IP 32953] gi|153947017|ref|YP_001399553.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pseudotuberculosis IP 31758] gi|170022892|ref|YP_001719397.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pseudotuberculosis YPIII] gi|186896853|ref|YP_001873965.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Yersinia pseudotuberculosis PB1/+] gi|73619910|sp|Q665U9|CCA_YERPS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|167006460|sp|A7FE75|CCA_YERP3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702096|sp|B2K2H9|CCA_YERPB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702098|sp|B1JM22|CCA_YERPY RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|51590991|emb|CAH22649.1| tRNA nucleotidyltransferase [Yersinia pseudotuberculosis IP 32953] gi|152958512|gb|ABS45973.1| multifunctional CCA protein [Yersinia pseudotuberculosis IP 31758] gi|169749426|gb|ACA66944.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Yersinia pseudotuberculosis YPIII] gi|186699879|gb|ACC90508.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Yersinia pseudotuberculosis PB1/+] Length = 412 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 155/357 (43%), Gaps = 51/357 (14%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRDSL+NL V + D + P++++++ + K P + + ++Y Sbjct: 4 YLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVFLHP-----VSHEEY 58 Query: 89 FDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R S G + D LRRD T+NA+ G+ ID G DL N Sbjct: 59 ALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLEN 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + DA ED LR+LR RF A + ++ L++++ L L+ E Sbjct: 119 RVLRHVSDA---FGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E K L+ ++P + + G +F +++ + + A + + +ID+ Sbjct: 176 RVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLF------GVPAPEKWHPEIDTG 229 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD- 322 + ++ L++A + S +IR+ + C+ K L+ E + +G Sbjct: 230 IHTLM---------TLAIAAQLSPEVDIRFAAL----CHDLGKGLTPKEHWPHHHGHGPA 276 Query: 323 -----KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L+I L Y++L H +L++ + I W+KP Sbjct: 277 GVKLVEQLCQRLRIPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPE 333 >gi|255311216|ref|ZP_05353786.1| polyA polymerase [Chlamydia trachomatis 6276] gi|255317518|ref|ZP_05358764.1| polyA polymerase [Chlamydia trachomatis 6276s] Length = 425 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 7/225 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 45 HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC----ILV 100 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + I + ++ T RS D K + D LRRDFTIN L+ D Sbjct: 101 GKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS 160 Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 161 AEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEALQ 219 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 ++ L S R++ EI K+L + + + +F Sbjct: 220 ESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFP 264 >gi|56479470|ref|YP_161059.1| RNA-poly(A) polymerase [Aromatoleum aromaticum EbN1] gi|56315513|emb|CAI10158.1| RNA-poly(A) polymerase [Aromatoleum aromaticum EbN1] Length = 452 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 13/221 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++L + K+ +VGGAVRD L+ +D D+AT+ P+ V +F ++R Sbjct: 41 ARKVCTVLQEHGHKAFVVGGAVRDLLVGHPPKDYDVATSATPEEVRALFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + ++ + +++T R ++ GR + D+ RRDFT+NAL Sbjct: 97 RRFKIVHVMSGPETIEVSTFRASQVAESTETDEHGRVLRDNVFGSQAEDATRRDFTVNAL 156 Query: 128 YADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y D + ++DY G+ DL+ +T++ IGD R ED +R+LR R A G +D Sbjct: 157 YYDPTTEQIVDYHHGVADLKQKTLRIIGDPRARYREDPVRMLRGVRLGAKLG-LTLDPAA 215 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 + L+ + + R++ E+ KLL + L + + Sbjct: 216 RHPIREMASLLENVPAARLFDEMLKLLFSGYALKCLEQLRE 256 >gi|229183830|ref|ZP_04311047.1| CCA-adding enzyme [Bacillus cereus BGSC 6E1] gi|228599679|gb|EEK57282.1| CCA-adding enzyme [Bacillus cereus BGSC 6E1] Length = 347 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 69/355 (19%), Positives = 150/355 (42%), Gaps = 15/355 (4%) Query: 59 VMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKAD 116 +M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MMGIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEED 56 Query: 117 SLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 LKRRDFTMNAIAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVST 116 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 LG-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-P 174 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 +Q L FE I++ F+ I + L +++ + ++ Sbjct: 175 YLQMSEERLLKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIV 231 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + +K + L Y G + +++ A + + + + + Sbjct: 232 AVLLTIRKRKEKDWDTV--LLYKTGIHIAEMSERVYEA-MIESYDNTSVKRVQTLFEALP 288 Query: 357 HWKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ + ++ + + +E + L++ Sbjct: 289 IKSRQEMNVTGNDLLNWANKKPGPWVAEMIQNIEEAIVQGNVVNEKECIREWLQE 343 >gi|15602112|ref|NP_245184.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pasteurella multocida subsp. multocida str. Pm70] gi|73619816|sp|Q9CP21|CCA_PASMU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|12720475|gb|AAK02331.1| Cca [Pasteurella multocida subsp. multocida str. Pm70] Length = 420 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 87/359 (24%), Positives = 150/359 (41%), Gaps = 46/359 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+NL V+D D + PD ++ + K P + T ++ Sbjct: 2 KIYLVGGAVRDQLLNLVVKDRDWVVVGATPDDLLSQGYQQVGKDFPVFLHPQT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R + G T + D RRD TINAL D GK+ D+ GGL DL Sbjct: 57 EYALARTERKAGSGYTGFICDFSPTISLEQDLSRRDLTINALAQDLDGKIYDFYGGLTDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + R ++ + A ED LR+LR RF A Y ++ L+ + L L+ Sbjct: 117 KQRLLRHVSPA---FAEDPLRVLRVARFAARYHALGFTIASETRELMQQLSQSGELSNLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L +P + G + +F ++ + Q + + +ID Sbjct: 174 AERVWLETEKALLEPHPEVYFQTLQEVGALQVLFPELAAL------QGVPNPAKYHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++++ ++++L S +R+ I C+ K L+ EI Y + Sbjct: 228 TFVHTMLVL----QQAVLLTENTDSDKSAVRFAAI----CHDLGKALTPKEILPHHYGHE 279 Query: 322 D------KVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKKPL 362 + + + K+ A+ H + IL++ + + W+KP Sbjct: 280 KAGVMPTRRLCQRFKLPHAIQDFAELCCEYHSHIHKAFELRAETILKLFNRLDVWRKPE 338 >gi|308271595|emb|CBX28203.1| hypothetical protein N47_G35270 [uncultured Desulfobacterium sp.] Length = 889 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 89/414 (21%), Positives = 168/414 (40%), Gaps = 29/414 (7%) Query: 12 DSDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 LI IL + K ++ +GG VRD L+ +D+DI + ++ Sbjct: 476 SKHLIEILKTIGKVATETGFRAYAIGGFVRDLLLYRKNEDVDITVEGDGIAFAKKYAPLV 535 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + +GT +I DI + R + V K D RRDFTIN Sbjct: 536 GARLHIYEKFGTAVVIFPDGFKIDIASARMEYYKFPAALPTVEMSSIKLDLFRRDFTINT 595 Query: 127 LY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + ++ G +ID+ D++ + IK + + +ED RI R RF +G Sbjct: 596 MAIQLNPERFGTLIDFFAAQKDIKEKAIKVLHN--LSFVEDPTRIFRAIRFEQRFGFTIG 653 Query: 183 D-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 + GL+ + K LS R++SE+ ++LE +NP+ +I+ + + G+ K I + + Sbjct: 654 KLTSGLIENAVKMDFFKRLSGRRVFSELRQILEEENPIFSIIRLNDYGLLKVIDPSII-L 712 Query: 242 SLDQLSQVIEAEQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 + + +S + +QV W I + F+ L K+ ++ +F EI Sbjct: 713 NNELISYLNSVKQVVSWYNLLFLEESYIKWAVYFMALFGHCKKEVTENVCTRF----EIA 768 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV--MIAKLKIFLALHYNNLTHQDTCFILQ 350 S F + + E++ + + D + M+ +I + L+ +T ++ Sbjct: 769 PKQKSIFCEERIESERCLRELENGYNITNDMLYNMLFPFRIEIILYMMAITKRERAKKAI 828 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 I + ++G D+ G+ PG NIL +N + +++ Sbjct: 829 SF-FITQLRMAKLSVSGKDLKTLGLEPGPLYKNILQAALNAKLNGLLKTKYDEM 881 >gi|157372526|ref|YP_001480515.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Serratia proteamaculans 568] gi|167006459|sp|A8GJU7|CCA_SERP5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157324290|gb|ABV43387.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Serratia proteamaculans 568] Length = 414 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 75/346 (21%), Positives = 144/346 (41%), Gaps = 40/346 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRDSL+ + V D D + P + + + K P ++ T + Sbjct: 2 KTYLVGGAVRDSLLEIPVVDRDWVVVGAAPSELTALGYQQVGKDFPVFLNPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ G++ID G+ Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEEDLQRRDLTINAIARSDDGELIDPFNGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+ R ++ + DA ED LR+LR RF A + ++ L+ + L Sbjct: 114 ADLQARVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFSIAPETAELMRQMARSGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L++++P + + +F ++ + + A + Sbjct: 171 ALTAERVWKETEKALQSQSPQVYFQVLRDCEALGVLFPEIDTLF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L++A + S ++R+ + C+ K + E+ + Sbjct: 225 EIDTGIHTLM---------TLAIAAQLSPEVDVRFSAL----CHDLGKGQTPKELWPHHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +G ++ + L N +D ++ D+IH L P Sbjct: 272 GHGPAGVLLVEALCRRLRVPN-PVRDLAKLVAEYHDLIHTVNKLRP 316 >gi|260556738|ref|ZP_05828956.1| LOW QUALITY PROTEIN: tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii ATCC 19606] gi|260409997|gb|EEX03297.1| LOW QUALITY PROTEIN: tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter baumannii ATCC 19606] Length = 412 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 78/405 (19%), Positives = 151/405 (37%), Gaps = 58/405 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDYLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ GK+ D GG Sbjct: 57 ---EYALARTERKSGQGYHGFQFFTDTTVSLEDDLIRRDLTINAIAMDQDGKIYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 NDL N+ ++ + +A ED LR+LR RF A Y I + L+ ++ L Sbjct: 114 NDLENKILRHVSEA---FAEDPLRVLRVARFAARYFPYGFQIAPETLQLMQTMADSGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L + + + G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALMENHADIYFQTLRDCGALKHLFPEIDALFGVPQRPEYHPEVDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPAEELPRHIMHEERGIKPVTQLCERLRV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + + +S + +L + +L +++ F+ + + Sbjct: 291 PTQTKQLALSVCKEHLKCHQIMSLKPGTLWRLLQRLDVLRRPERVEAFVQACECDAKGRL 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + + + + D+ + G ++G +L+ Sbjct: 351 GLEDRPYPQAQYMREAMQIVRSIKVQDLPEN--IKGAEIGEMLIQ 393 >gi|299769308|ref|YP_003731334.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter sp. DR1] gi|298699396|gb|ADI89961.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Acinetobacter sp. DR1] Length = 412 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 82/407 (20%), Positives = 155/407 (38%), Gaps = 62/407 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRDSL+ Q+ D + P+ ++ + K P + T + Sbjct: 2 QVYLVGGAVRDSLLGHPYQEKDYVVVGATPEHMLAQGFQPVGKDFPVFLHPETKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ DQ GK+ D GG Sbjct: 57 ---EYALARTERKSGKGYHGFQFFTDTTVSLEEDLIRRDLTINAIAMDQDGKLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 DL N+T++ + DA ED LR+LR RF A Y +I + L+ ++ L Sbjct: 114 TDLENKTLRHVSDA---FAEDPLRVLRVARFAARYSAYGFHIAPETLQLMQTMAESGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L + + + K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALLEDHADIYFQTLRDCSALKHLFPEIDALFGVPQRPEYHPEVDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + ++ + Sbjct: 231 HTLMSLQQACKSNYSLDVRFAVLVHDLGKALTPVNELPRHIMHEERGVKPVTELCERLKV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLAL----HYNNL 340 P + R +S + +L + +L +++ F+ L Sbjct: 291 PTQTRQLALSVCKEHLKCHQIMSLKPGTVWRLLQRLDVLRRPERVEAFVQACECDARGRL 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 +D + ++ + + + D+ + G ++G +L+ Sbjct: 351 GLEDRPY--PQAQYMLDAMQVVRSIKVQDLPEN--IKGAEIGEMLIQ 393 >gi|15605135|ref|NP_219920.1| polyA polymerase [Chlamydia trachomatis D/UW-3/CX] gi|3328838|gb|AAC68007.1| PolyA Polymerase [Chlamydia trachomatis D/UW-3/CX] gi|296435931|gb|ADH18105.1| polyA polymerase [Chlamydia trachomatis G/9768] gi|296436858|gb|ADH19028.1| polyA polymerase [Chlamydia trachomatis G/11222] gi|296437792|gb|ADH19953.1| polyA polymerase [Chlamydia trachomatis G/11074] gi|297140292|gb|ADH97050.1| polyA polymerase [Chlamydia trachomatis G/9301] gi|297748540|gb|ADI51086.1| Poly(A) polymerase [Chlamydia trachomatis D-EC] gi|297749420|gb|ADI52098.1| Poly(A) polymerase [Chlamydia trachomatis D-LC] Length = 425 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 76/306 (24%), Positives = 127/306 (41%), Gaps = 20/306 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 45 HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC----ILV 100 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + I + ++ T RS D K + D LRRDFTIN L+ D Sbjct: 101 GKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS 160 Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 161 AEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEALQ 219 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 ++ L S R++ EI K+L + + + +F + + LS+ ++ Sbjct: 220 ESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAF--SLSKTLQ 277 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F L + K S + I F I FN + Sbjct: 278 DQT-----------FACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTM 326 Query: 312 EIKKLF 317 I+ +F Sbjct: 327 TIQSIF 332 >gi|229029317|ref|ZP_04185405.1| CCA-adding enzyme [Bacillus cereus AH1271] gi|228731976|gb|EEL82870.1| CCA-adding enzyme [Bacillus cereus AH1271] Length = 346 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 70/354 (19%), Positives = 147/354 (41%), Gaps = 15/354 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLEMKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + H + + + Sbjct: 232 VLLTIRTRKEKDWDTV--LLYKTGLHIAEMAERVYEA-MIESYDHTSVKRVQTLFEILPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ ++ + + +E + L++ Sbjct: 289 KSRQEMNVTGNDLLNWANKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342 >gi|291613415|ref|YP_003523572.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1] gi|291583527|gb|ADE11185.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 13/233 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + L K+ +VGGAVRD L++ +D D+AT P+ V R+F + R Sbjct: 41 ARRVTDGLQAAGFKAFVVGGAVRDLLLDRQPKDFDVATDATPEEVKRVFRRARI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + ++ ++ +++T R ++ GR + D + D+ RRDFT N L Sbjct: 97 RRFRLVHVMFGEETVEVSTFRRAIDAEDAETDEHGRILRDNEFGDQEQDAARRDFTANGL 156 Query: 128 YADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + D ++ DY G D+R T++ IGD R ED +R+LR R A G K +D Sbjct: 157 FYDPATQEIFDYHHGYEDIRANTLRMIGDPEVRYREDPVRMLRAVRLSAKLGMK-LDPAT 215 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 K K+ L + R++ E+ KLL + L I + + + + Sbjct: 216 AAPISKMKELLSNVPEARLFDEMLKLLLSGQALPCIKKLRAMELHHGMLPMLD 268 >gi|297539582|ref|YP_003675351.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylotenera sp. 301] gi|297258929|gb|ADI30774.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylotenera sp. 301] Length = 402 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 142/355 (40%), Gaps = 26/355 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ LSV+D D + P+ + K K P + T Sbjct: 2 QIYLVGGAVRDELLGLSVKDKDYVVVGSTPEEMEAAGYKPVGKDFPVFLHPKT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y + D RRD TINA+ G++ID GL Sbjct: 55 -HDEYALARTERKTAKGYKGFAVHASVDVTLEEDLARRDLTINAIAKSVDGQLIDPYHGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 D++++T++ + A ED +RILR R A + + ++ + L+ + + + L Sbjct: 114 ADIQSKTLRHVSAA---FAEDPVRILRAARLSARFADFSVAPETNQLMQDMVSAGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +ER+W E+ K L P + G K+I + LD+L V + Q ++ Sbjct: 171 VAERVWQELAKGLMEAKPSRMFDVLRACGALKKIMPE-----LDKLWGVPQPPQ-HHPEV 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRY--FLISFFNCNFNQKTLSIPEIKKLFY 318 D+ + +++I + K+S + +L ++ L + + S +K L Sbjct: 225 DTGVHVMMVIDYAAKQSFSLPVRFAALMHDLGKGTTLAEILPRHIGHEERSANLLKALCK 284 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +L +A + L +L ++ P D +K Sbjct: 285 RLRVPNDCKELGHIVAKFHGKLHQAPQMKPSTLLEFLVELDAIRQPARFKDFLKA 339 >gi|167580696|ref|ZP_02373570.1| polyA polymerase [Burkholderia thailandensis TXDOH] Length = 514 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 180 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 181 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 240 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 241 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 299 Query: 219 LNAIVHMYN 227 L + + Sbjct: 300 LACLKQLRK 308 >gi|262368647|ref|ZP_06061976.1| tRNA nucleotidyl transferase [Acinetobacter johnsonii SH046] gi|262316325|gb|EEY97363.1| tRNA nucleotidyl transferase [Acinetobacter johnsonii SH046] Length = 407 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 80/412 (19%), Positives = 155/412 (37%), Gaps = 72/412 (17%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D + P++++ + K P + T Sbjct: 2 QVYLVGGAVRDQLLGHPYHEKDYVVVGATPEQLLAQGFQPVGKDFPVFLHPET------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ D +G + D GG Sbjct: 55 -KDEYALARTERKSGQGYHGFEFYTDSTVTLEQDLIRRDLTINAIAMDDEGTLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + DA +ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 RDLELRVLRHVSDA---FVEDPLRVLRVARFAARYKTLGFSVAEETLALMQQLADSGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L+ ER+W E ++ L + + G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALMEDHADEYFEVLRRCGALKVLFPEIAALYGIPQRPEYHPEIDCGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ +Q +RF VL+ K K + + ++ + Sbjct: 231 HTMMSLQQACRANYALDVRFAVLVHDLGKALTPVDELPRHIMHEERGVKPVTEVCERLKV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFL---------AL 335 P +++ I+ + TL + +L +++ F+ L Sbjct: 291 PTQMKQLAITVCKEHLKCHQALTLKPGTLWRLLQRLDVLRRPERVEAFVQACECDSRGRL 350 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + + + +IL+V+ + + K P D+ G +G +L+ Sbjct: 351 GLEDREYPQSAYILKVMDVVRNIKAQDLP---ADIK------GPDIGEMLIE 393 >gi|119896784|ref|YP_931997.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Azoarcus sp. BH72] gi|166233841|sp|A1K2Q5|CCA_AZOSB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|119669197|emb|CAL93110.1| tRNA-nucleotidyltransferase [Azoarcus sp. BH72] Length = 412 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 138/347 (39%), Gaps = 28/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L V+D D + PD ++ + K P + T + Sbjct: 2 RTYVVGGAVRDALLGLPVKDRDWVVVGATPDEMLARGFRPVGKDFPVFLHPQTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F + D RRD TINA+ D G +ID GG+ Sbjct: 57 ---EHALARTERKTGRGYAGFAFHTAPDVTLEEDLARRDLTINAIARDADGTLIDPYGGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL R + + A ED +RILR RF A + + ++ + L+ ++ + L Sbjct: 114 ADLHGRVFRHVSPA---FAEDPVRILRVARFAARFADFSVAPETLALMRAMVDNGEVDHL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +ER+W E + L +P I + + G + + LD+L V + Q +I Sbjct: 171 VAERVWQEFARGLMEAHPARMIRVLRDCGALARLLPE-----LDRLFGVPQPAQ-HHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNFNQKTLSIPEIKKLF 317 D+ ++++ Q S+ +++ + ++ + S +++ Sbjct: 225 DTGEHVLMVVE-QAAARAHSLPVRWATLLHDLGKGETPAAILPHHYGHEARSADLARQVS 283 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 V L + +A + L ++ + P Sbjct: 284 ERLKAPVDCRDLAVMVAREHGILAQAAVLRAETMVKVLERCDALRRP 330 >gi|161525796|ref|YP_001580808.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616] gi|189349483|ref|YP_001945111.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616] gi|160343225|gb|ABX16311.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616] gi|189333505|dbj|BAG42575.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616] Length = 512 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 33/248 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD---- 101 + + + ++ +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPKRLKRDELDRRTHAVDA 180 Query: 102 -GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHR 159 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 181 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR 240 Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 ED +R+LR RF A G I+ + + + R++ E+ KLL + + L Sbjct: 241 YREDPVRMLRVVRFAAKLG-FEIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHAL 299 Query: 220 NAIVHMYN 227 + + Sbjct: 300 ACLQRLRK 307 >gi|308389334|gb|ADO31654.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis alpha710] gi|325130312|gb|EGC53079.1| multifunctional CCA protein [Neisseria meningitidis OX99.30304] gi|325136273|gb|EGC58881.1| multifunctional CCA protein [Neisseria meningitidis M0579] Length = 417 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 141/347 (40%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKF-SLPREIRYF-----LISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ +++ +L ++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|322419451|ref|YP_004198674.1| polunucleotide adenylyltransferase region [Geobacter sp. M18] gi|320125838|gb|ADW13398.1| Polynucleotide adenylyltransferase region [Geobacter sp. M18] Length = 873 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 78/415 (18%), Positives = 154/415 (37%), Gaps = 22/415 (5%) Query: 16 INILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + IL L + D + VGG VRD L+ D+D+ F+ + Sbjct: 460 VEILHNLGRVGDSLDLQVYAVGGFVRDLLLGQENADVDVTVDGDGILFAETFAAEFDCRV 519 Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + +GT I+ D+ + R + V K D RRDFT+N L Sbjct: 520 KSHEKFGTAVIVFPDGFKVDVASTRLEYYVSPAALPTVERSSLKMDLYRRDFTVNTLAIS 579 Query: 131 QQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSD 185 GK+IDY G DL+ R I+ + + +ED R+ R RF K ++ Sbjct: 580 LNSQSFGKLIDYFGAYRDLQARVIRVLHN--LSFVEDPTRVFRAIRFEQRLNFKIAKHTE 637 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----E 240 L+ + L L R+ SE+ ++L K PL I M + G+ + I +++ + Sbjct: 638 DLIKNAVKMDFLVKLGGRRLLSELVQILMEKEPLKGIGRMASLGLLRFIHPNIELTAQLQ 697 Query: 241 ISLDQLSQVIEAEQVFEWKID---SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 ++L+++ V+ + + + F+ L + + + ++ + L Sbjct: 698 VTLEEVRYVVSWYDLLYLERPYERWAVYFLTLCEVLSAEQFWATCTRLAVTEHYKEHLAE 757 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 + ++ + L ++ + L Y+ + + Sbjct: 758 MRHLGEELVGAMERKLTRQERLENSEIYFTLRGLPVEILLYHMAKSGNPEIKRCISLYFT 817 Query: 357 HWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + G+D+ + GI PG +L +N ++++ L+R++ Sbjct: 818 KLHSMHTLIGGEDLKELGIKPGPLYRELLDAVLSARMNGKVSSKEDEIE-LVREM 871 >gi|302877439|ref|YP_003846003.1| Polynucleotide adenylyltransferase region [Gallionella capsiferriformans ES-2] gi|302580228|gb|ADL54239.1| Polynucleotide adenylyltransferase region [Gallionella capsiferriformans ES-2] Length = 414 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 73/349 (20%), Positives = 140/349 (40%), Gaps = 28/349 (8%) Query: 25 GEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKII 83 + VGGAVRD L+ L V+D D + P+ ++ + + P + T + Sbjct: 3 ANAQIYCVGGAVRDRLLGLPVKDHDWVVVGSTPEAMIAQGYQPVGRDFPVFLHPKTHE-- 60 Query: 84 CRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYV 139 + R++ T Y V + D +RRDFT+NA+ D G +ID Sbjct: 61 ------EYALARTERKTAPGYKGFVVHAAPDVTLEQDLMRRDFTVNAIAQDTAGNLIDPH 114 Query: 140 GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAKKGLK 198 GG+ DLR ++ + A ED +RILR RF A +G ++ L+ + + Sbjct: 115 GGMTDLRAGILRHVSSA---FNEDPVRILRAARFAARFGFHIAPETQALMCDMVNNGEVD 171 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L SER+W E+++ L + P + + G +I ++ D L + + + + Sbjct: 172 ALVSERVWQELSRALMEQTPARFFTTLRDCGALAKIMPEI-----DALFGIPQVAK-YHP 225 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS--FFNCNFNQKTLSIPEIKKL 316 +ID L +++I + + +L ++ + + + S+ +K L Sbjct: 226 EIDCGLHTLMVIEDAAQHDYALEVRYAALTHDLGKATTAPDMLPRHLGHELRSVALVKTL 285 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIHWKKPL 362 L + A + ++ I+++ W++P Sbjct: 286 SERIRATGECRDLALLAARFHGDIHRASELRSDTIIKLFQSSDAWRRPE 334 >gi|311695885|gb|ADP98758.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [marine bacterium HP15] Length = 373 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 78/378 (20%), Positives = 138/378 (36%), Gaps = 27/378 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + P ++ K P + T + Sbjct: 2 QAYLVGGAVRDELLGLEVKDRDWVVVGATPREMLANGFKQVGADFPVFLHPRTRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D RRD TINA+ + G ++D G Sbjct: 57 ---EYALARTERKQGRGYHGFTVYSAPDVTLEQDLKRRDLTINAMAKAENGDLVDPFEGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNID-SDGLVASIKAKKGLK 198 D+ +R ++ + +A ED LRILR RF A + G D + L+ + + Sbjct: 114 RDIEDRKLRHVSEA---FAEDPLRILRTARFAARFHPLGFSVCDQTMALMKRMVDSGEVD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W E + L + P + + G + + ++ + QL+ Sbjct: 171 HLVPERVWQEFQRALHEQAPEAFFEVLRDCGALEVLIPELASEKVFQLAMAALGCVHRRL 230 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY--FLISFFNCNFNQKTLSIPEIKKL 316 ++ RF L+S D AK P + + L++ F PE + L Sbjct: 231 HAETEERFAALLSPLDAPVAKDRAKALKAPNDCQNLARLVTAFTPQIRDIDAQRPEAETL 290 Query: 317 FYLYGDKVMIAK-LKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L + + + L +L + P ++ G Sbjct: 291 LDLLDQADVWRRPERFSQLTKVLECALPGDSLTLDLLRTASEAATGVEP---RTLLAQGY 347 Query: 376 PPGKKVGNILVHCKQEWI 393 GK++GN + + + I Sbjct: 348 K-GKELGNAIRTERLKRI 364 >gi|166154621|ref|YP_001654739.1| polyA polymerase [Chlamydia trachomatis 434/Bu] gi|166155496|ref|YP_001653751.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335888|ref|ZP_07224132.1| polyA polymerase [Chlamydia trachomatis L2tet1] gi|165930609|emb|CAP04106.1| polyA polymerase [Chlamydia trachomatis 434/Bu] gi|165931484|emb|CAP07060.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 425 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 7/225 (3%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 45 HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC----ILV 100 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + I + ++ T RS D K + D LRRDFTIN L+ D Sbjct: 101 GKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS 160 Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY GG+ DL+NR ++ IGD R +D +R+LR + + Y +D L A Sbjct: 161 AEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEALQ 219 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 +++ L S R++ EI K+L + + + +F Sbjct: 220 ESRHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFP 264 >gi|319762115|ref|YP_004126052.1| poly(a) polymerase [Alicycliphilus denitrificans BC] gi|330826054|ref|YP_004389357.1| poly(A) polymerase [Alicycliphilus denitrificans K601] gi|317116676|gb|ADU99164.1| poly(A) polymerase [Alicycliphilus denitrificans BC] gi|329311426|gb|AEB85841.1| poly(A) polymerase [Alicycliphilus denitrificans K601] Length = 522 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 131/309 (42%), Gaps = 43/309 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 40 PELVDRRATDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRA- 98 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 99 ---FIIGKRFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVSGNEKTSKAQLSGMQHA 155 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFT+NA+Y D + + V+D+ G+ D + R ++ IGD Sbjct: 156 VDASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPETQVVVDFHKGIEDAKRRVLRMIGDP 215 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A ++ + + L+ + R++ E+ KLL+ Sbjct: 216 ATRYREDPVRIIRAVRFAAKLSPLGFALEPKTAKPLLACEPLLQEVPQSRLFDEMLKLLQ 275 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA------EQVFEWKIDSLLRFIV 268 + L ++ + G+ K I+ + + ++A +V E K + + Sbjct: 276 TGHALASVAQLRGLGLEKGIYPLLDVVVGRADQPFVQAALADTDRRVGEGKTVAPSFLLA 335 Query: 269 LISWQDKKS 277 + WQD K+ Sbjct: 336 CVLWQDVKA 344 >gi|228920347|ref|ZP_04083693.1| CCA-adding enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839269|gb|EEM84564.1| CCA-adding enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 346 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 146/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLEMKTKQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + + + + Sbjct: 232 VLLAIRTRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIESYDPTSVERVQSMFHALPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 289 QERQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341 >gi|77163920|ref|YP_342445.1| polynucleotide adenylyltransferase [Nitrosococcus oceani ATCC 19707] gi|254435627|ref|ZP_05049134.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Nitrosococcus oceani AFC27] gi|123595046|sp|Q3JE31|CCA_NITOC RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|76882234|gb|ABA56915.1| Polynucleotide adenylyltransferase [Nitrosococcus oceani ATCC 19707] gi|207088738|gb|EDZ66010.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Nitrosococcus oceani AFC27] Length = 406 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 68/343 (19%), Positives = 131/343 (38%), Gaps = 37/343 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V++ D + P ++ + K P + T + Sbjct: 2 EVYLVGGAVRDKLLGRPVKERDYVVVGTTPANLLAQGYRPVGKDFPVFLHPQTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D RRD TINA+ G ++D GG Sbjct: 57 ---EYALARTERKTGPGYKGFEVDAAPDVTLEEDLQRRDLTINAIAEAADGSLLDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A + K ++ L+ ++ L Sbjct: 114 QDLARGILRHVSPA---FAEDPVRILRAARFAARFNFKVAPETLALMEAMVTAGEADHLV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E+ + L P + G IF +++ + + + + +ID Sbjct: 171 PERVWRELERALGESYPRRFFEILRACGALARIFPEIECLF------GVPQPRRYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + + +L +A S ++R+ ++ + K + Y +G Sbjct: 225 TGIHTL---------KVLEIAAHLSSDTQVRFAALT----HDLGKGQTPSHEWPHHYGHG 271 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 ++ + L + L +Q + +++H + L P Sbjct: 272 ERGVALVLTLCQRLRVPK-AYQALAVQVARYHNLVHQAQELRP 313 >gi|241766688|ref|ZP_04764530.1| poly(A) polymerase [Acidovorax delafieldii 2AN] gi|241362988|gb|EER58669.1| poly(A) polymerase [Acidovorax delafieldii 2AN] Length = 526 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 45/337 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D +++ L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 39 PELVDRRAAEVVATLKQAGFEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRA- 97 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 98 ---FIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAGQVSGNEKTSKAQLSGMQHA 154 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFT+NA+Y D ++ +DY GL D + +T++ IGD Sbjct: 155 VDASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPVSQIVVDYHKGLQDAKKKTLRMIGDP 214 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A +D+ +++++ L+ + R++ E+ KLL+ Sbjct: 215 ATRYREDPVRIIRAVRFAAKLSALGFTLDAKTAAPLVQSQQLLQDVPQSRMFDEMLKLLQ 274 Query: 215 AKNPLNAIVHMYNGGIFKEIFL------DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIV 268 + + I + G+ I+ + + + +V E K + + Sbjct: 275 TGHAIATIAQLRKLGMATGIYPLLDVVVERADTPFVNAALTDTDRRVGEGKPVAPSFLLA 334 Query: 269 LISWQDKKS--ILSMAKKFSLPREIRYFLISFFNCNF 303 + W+D + + ++ ++ + F+ Sbjct: 335 CVLWEDVRKGWTERLNQRQHPLPALQDAIDDVFDKRI 371 >gi|71909744|ref|YP_287331.1| metal dependent phosphohydrolase [Dechloromonas aromatica RCB] gi|123626227|sp|Q477X0|CCA_DECAR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|71849365|gb|AAZ48861.1| metal dependent phosphohydrolase [Dechloromonas aromatica RCB] Length = 412 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 71/347 (20%), Positives = 136/347 (39%), Gaps = 28/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + IVGGAVRD L+ D D + P+ ++ + K P + T Sbjct: 2 QIYIVGGAVRDELLGRPNADCDYVVVGATPETMLAQGFRPVGKDFPVFLHPNT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y +F + D RRD TINA+ G ++D G Sbjct: 55 -HDEYALARTERKTGHGYHGFIFHAAADVTLEEDLARRDLTINAMAKAADGTLVDPFNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL ++T++ +G A ED +RILR RF A + + ++ + L+ S+ A + L Sbjct: 114 QDLASKTLRHVGPA---FAEDPVRILRIARFAARFSDFSVAPETLALMRSMVACGEVDHL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +ER+W E+ K L + P + + G + +V D+L V + + +I Sbjct: 171 VAERVWQELAKGLMEQKPSRMFEVLRDCGALARLLPEV-----DKLFGVPQRAD-YHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREI---RYFLISFFNCNFNQKTLSIPEIKKLF 317 D+ + +++I Q + ++ +F+ + + S+ ++L Sbjct: 225 DTGIHTMMVID-QSARRTFTLPVRFAALTHDLGKAETPADILPRHIGHEERSVRLTEQLC 283 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 L + A ++ N+ +++ P Sbjct: 284 ARLRVPNDCRDLALLTARYHGNIHRAADLKASTIVTLFEKTDALRRP 330 >gi|157374223|ref|YP_001472823.1| metal dependent phosphohydrolase [Shewanella sediminis HAW-EB3] gi|189081880|sp|A8FS72|CCA_SHESH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|157316597|gb|ABV35695.1| metal dependent phosphohydrolase [Shewanella sediminis HAW-EB3] Length = 413 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 40/344 (11%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+NL+V+D D + P +++ + + K P + T + Sbjct: 4 YLVGGAVRDNLLNLTVKDRDHMVVGATPQQMLEMGYRQVGKDFPVFLHPETGQ------- 56 Query: 89 FDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ T G + D LRRD TINA+ D++G++ D GG++D Sbjct: 57 -EYALARTERKTGVGYGGFSCHASPDVTLEEDLLRRDLTINAIAQDEEGQLYDPYGGVDD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVAS--IKAKKGLKIL 200 + NR ++ + DA +ED LR+LR RF A + I + L I L+ L Sbjct: 116 INNRVLRHVSDA---FVEDPLRVLRVARFAARFHRQGFTIADETLAMMTQISHSGELEAL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER++ E++K L +P I + +F ++ + + + +I Sbjct: 173 TAERVFLELDKALATDSPQVFIHVLNQCDALAILFPEIHALF------GVPQPVKWHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ +L A K +R+ + + K LS E + + Sbjct: 227 DTGIHTLM---------VLEQAAKLCDDNSVRFAAL----VHDLGKALSPKEHLPKHHGH 273 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 G K + A +K+ A ++D ++ L IH + L P Sbjct: 274 GQKGL-ALIKVLCARVRVPNDYRDLALLVSDLHQNIHQIEELRP 316 >gi|328914968|gb|AEB55801.1| poly(A) polymerase family protein [Chlamydophila psittaci 6BC] Length = 414 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 7/227 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 28 SPHALSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC----I 83 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYAD 130 + I + +++T RS + K + D LRRDFTIN L+ D Sbjct: 84 LVGKRFRLAHIRFSNQIIEVSTFRSGSADEDCLITKDNLWGTAEEDVLRRDFTINGLFYD 143 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L A Sbjct: 144 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILAR-AHFTVDPKTLEA 202 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + + L S R++ E+ K+L + I + +F Sbjct: 203 LQECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFP 249 >gi|325202065|gb|ADY97519.1| multifunctional CCA protein [Neisseria meningitidis M01-240149] gi|325208181|gb|ADZ03633.1| multifunctional CCA protein [Neisseria meningitidis NZ-05/33] Length = 417 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 141/347 (40%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKF-SLPREIRYF-----LISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ +++ +L ++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|94499961|ref|ZP_01306496.1| tRNA nucleotidyltransferase [Oceanobacter sp. RED65] gi|94427819|gb|EAT12794.1| tRNA nucleotidyltransferase [Oceanobacter sp. RED65] Length = 419 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 81/422 (19%), Positives = 166/422 (39%), Gaps = 57/422 (13%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 K+ +VGGAVRD L+N++++D D + P+ + K P + T + Sbjct: 4 NMKTYLVGGAVRDQLLNIAIKDRDWVVVGSTPEDMQGKGYKQVGADFPVFLHPKTQE--- 60 Query: 85 RKKYFDITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVG 140 + R++ + Y V FT D + D +RRD TINA+ D+ G++ID Sbjct: 61 -----EYALARTERKSGKGYQGFTVDFTSDVTLEEDLIRRDLTINAMAQDESGEIIDPFN 115 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKG 196 G D++++ ++ + A ED LR+LR RF A + ++ L+ + Sbjct: 116 GRLDIKDKVLRHVSPA---FSEDPLRVLRVARFAARFHHLGFTVADETLSLMTELSDSGE 172 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ---------- 245 L L++ER+W E + L K+P + + K F ++ ++ + Q Sbjct: 173 LATLTAERVWVETQRALSEKSPWIYFQVLKDCHALKACFKELDDLFGVPQPEKHHPEIDT 232 Query: 246 -LSQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKF 285 L ++ EQ D+ +RF L+ K K I ++ + Sbjct: 233 GLHSLMVLEQASLLSTDTEVRFAALVHDLGKGKTPKEEWPRHIGHEKKGLKPIKALCDRL 292 Query: 286 SLPREIRYFLI--SFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 +P + + + S F+ + ++ L + K+F + + L + + Sbjct: 293 RVPNKHKELALKASEFHTHVHRAFELKPSTVFKVFKQTDALRKPERFEQLLLVCKADSRG 352 Query: 343 QDTCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 + + + + + + + + + + G+ G ++G + E I + Sbjct: 353 RTSFENVPYKQMDYLDYLLRCVQQVDTKTIASSGLK-GPEIGAAIEAAYVEAIQQGQKNK 411 Query: 401 QE 402 + Sbjct: 412 SD 413 >gi|300724874|ref|YP_003714199.1| tRNA nucleotidyl transferase [Xenorhabdus nematophila ATCC 19061] gi|297631416|emb|CBJ92113.1| tRNA nucleotidyl transferase [Xenorhabdus nematophila ATCC 19061] Length = 390 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 126/308 (40%), Gaps = 34/308 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V + D + P+ ++ + K P + T + Sbjct: 2 KIYLVGGAVRDQLLELPVTERDWVVVGGNPEALLSQGYQQVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ +G+VID G+ Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQTAEGEVIDPYHGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL NRT++ + A ED LR+LR RF A + ++ L+ I A L Sbjct: 114 DDLNNRTLRHVSAA---FSEDPLRVLRLARFAARFSHLGFSIAPETQSLITEIAASGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E K L +++P + + G +F ++ + ++ + Sbjct: 171 SLTPERVWRETEKALTSQSPHVYFQVLRDCGALAVLFPEIDHLFNIPVQEKTHSNRNAGF 230 Query: 258 WKIDSL-----------LRFIVLISWQDKKSILSMAKKFSLPREIRY--FLISFFNCNFN 304 + L +RF L S M ++ +P +R +++ ++ + Sbjct: 231 HSLHVLRMATQLSNVIDIRFAALCSHIGSTPAKQMCERLRIPNSVRDLALIVTQYHPWVH 290 Query: 305 QKTLSIPE 312 +PE Sbjct: 291 TVEQRLPE 298 >gi|270263172|ref|ZP_06191442.1| multifunctional CCA protein [Serratia odorifera 4Rx13] gi|270042860|gb|EFA15954.1| multifunctional CCA protein [Serratia odorifera 4Rx13] Length = 414 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 78/362 (21%), Positives = 150/362 (41%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+ + V D D + P ++ + K P ++ T + Sbjct: 2 KIYLVGGAVRDSLLEIPVFDRDWVVVGASPSELLAQGYQQVGKDFPVFLNPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ G++ID G+ Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEEDLQRRDLTINAIARGSDGELIDPFHGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+ R ++ + DA ED LR+LR RF A + ++ L+ + L Sbjct: 114 ADLQARVLRHVSDA---FGEDPLRVLRVARFAARFAHLGFTLAPETAELMRHMARSGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L++++P + + +F ++ + + A + Sbjct: 171 TLTAERVWKETEKALQSQSPQVYFQVLRDCDALAILFPEIDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L++A + S ++R+ + C+ K L+ E+ + Sbjct: 225 EIDTGIHTLM---------TLAIAAQLSPDVDVRFAAL----CHDLGKGLTPQELWPHHH 271 Query: 319 LYGD------KVMIAKLKIF--------LALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + + +L++ L Y++L H +L++ I W+K Sbjct: 272 GHGLTGVKLVEALCQRLRVPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFDAIDVWRK 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|15614247|ref|NP_242550.1| tRNA CCA-pyrophosphorylase [Bacillus halodurans C-125] gi|73619745|sp|Q9KC89|CCA_BACHD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|10174301|dbj|BAB05403.1| poly(A) polymerase [Bacillus halodurans C-125] Length = 375 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 76/396 (19%), Positives = 159/396 (40%), Gaps = 35/396 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 ++I+S L ++ IVGGAVRD + +D+D+ T+ P+ + ++ + Sbjct: 9 LSIVSELRDHGFEAYIVGGAVRDYHIGRKPKDVDVVTSASPEEIRTLYPHA----FQINR 64 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 + T+ + +K +++TLR + D RDFTINA+ G + Sbjct: 65 QFQTLTVHLQKVAIEVSTLR--------------GGSIEDDLCSRDFTINAMALAMNGDI 110 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 ID GG DL N I+ R ED LR+LR RF + G + A + Sbjct: 111 IDPTGGKTDLENGVIRSFH-PEARFKEDPLRMLRAPRFASELG-FTVAKGTAEAIKGSCS 168 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 L ++ ER+ E+ +L+ + + ++ G++ + +SL + + + E Sbjct: 169 LLADVAVERVEKELTQLMIGTHRSSGWCLLHETGLY----PFIPGVSLSKETVLRMKEIS 224 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 + F ++ + S+ K L +E + + + + ++ S E Sbjct: 225 RSPGLLPADGFWAILYLLENCSM-----KLPLAKEKKKRIRTIVHYVGERQNHSWNETML 279 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 ++ +++ AL H++ + Q+ S + + +TG DV+ + Sbjct: 280 YQASLSVATVVEQIR---ALFGQASVHEEE--LRQLWSSLPIQTRTELAVTGRDVMAHFQ 334 Query: 376 PP-GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G + + L ++ + + ++ + L + Sbjct: 335 KKGGPWLADTLADIEEAVLLKHIENEKKSIIQWLEE 370 >gi|212702794|ref|ZP_03310922.1| hypothetical protein DESPIG_00824 [Desulfovibrio piger ATCC 29098] gi|212673656|gb|EEB34139.1| hypothetical protein DESPIG_00824 [Desulfovibrio piger ATCC 29098] Length = 893 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 77/406 (18%), Positives = 147/406 (36%), Gaps = 24/406 (5%) Query: 13 SDLINILSLL-NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 L+ + L + +VGG VRD L++ D+D R + + Sbjct: 467 RHLLELAGRLGQQLNMPVYVVGGFVRDLLLDRPNHDVDFVVEGEGVAFARALAAELGGRV 526 Query: 72 PTSISYGTIKIICRKK-----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + T +I + D+ T R + V K D RRDFTINA Sbjct: 527 REHRKFLTSMVIYHDEDGLEQRIDVATARLEYYESPAALPTVELSSIKMDLFRRDFTINA 586 Query: 127 LY----ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN- 181 L G+++D+ GG D++ ++ + +ED R LR RF YG Sbjct: 587 LAIRLDCTPYGQLVDFFGGQRDIKEGVLRVLH--TLSFVEDPTRSLRAVRFEQRYGFHIG 644 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--- 238 ++ L+ ++ + L LS +RI++E + + ++P + G+ + + + Sbjct: 645 PSAEKLIKNLLSLHMLDKLSGKRIFNEYTHICDEEDPAACFERLDGLGLLRALGPSLSLT 704 Query: 239 --QEISLDQLSQVIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293 + L Q+ ++ ++ E + L+ F+ L + + + LP + Sbjct: 705 PSKRQILQQVCSMLNWYRLLYFDESVENWLIYFLALGHRLNYAEVSANFAALGLPEGRKQ 764 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH---YNNLTHQDTCFILQ 350 ++ + + K G + L +L Y +D+ Sbjct: 765 EILQQRESMRHVQPKLARWQKAFEAGTGRISELYLLLEKFSLEFLLYIMAGVEDSGLQKN 824 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + I W++ + G D+ GI PG G IL ++ Sbjct: 825 LSRYITQWRREKPDIDGRDLRDMGIAPGPLFGRILRAVLVGKLDGE 870 >gi|332994270|gb|AEF04325.1| tRNA nucleotidyltransferase [Alteromonas sp. SN2] Length = 392 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 138/399 (34%), Gaps = 45/399 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+ +V + D + P +++ K P + T + Sbjct: 2 QVYLVGGAVRDTLLGRTVTERDYVVVGATPAQMLAKGFTQVGKDFPVFLHPKTSE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D RRD T+NA+ DQ G++ID G Sbjct: 57 ---EYALARTERKMGSGYTGFECDASTSVTLEEDLKRRDLTVNAIARDQDGELIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 DL+ + ++ + +A ED LR+ R RF Y I + L+ + L Sbjct: 114 KDLQQKILRHVSEA---FSEDPLRVFRVARFATRYAYLGFTIAEETLSLMTDMAKSGELT 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQL 246 LS+ER+W E + L P + + F ++ + + + Sbjct: 171 SLSAERVWQETKRSLLEATPEVFFKTLKACNGLDDWFAELSQSESAFNTAIQTLKQIQRQ 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPR---EIRYFLISFFNCNF 303 + EQ +RF S + M K+ + +I + + Sbjct: 231 THSQPQEQDASPSAPIEVRFAAFCSGLSLNDVQQMCKRLKVQNTVSDIAEMVSAHKTSLL 290 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFL------ALHYNNLTHQDTCFILQVLSDIIH 357 N L + +F + ++FL A+ ++L L Sbjct: 291 NCDKLDADTLLTVFNKTDAWRRPERFRLFLNALQPIAMQPSDLAQAGAMSSLHWPEREAL 350 Query: 358 WKKPLFPLTGDD---VVKYGIPPGKKVGNILVHCKQEWI 393 + L D ++ G G ++ L + K E I Sbjct: 351 ITQALVAANAVDVQHIIAQGFK-GPEIREALNNAKLEKI 388 >gi|261378744|ref|ZP_05983317.1| multifunctional CCA protein [Neisseria cinerea ATCC 14685] gi|269144899|gb|EEZ71317.1| multifunctional CCA protein [Neisseria cinerea ATCC 14685] Length = 417 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 79/346 (22%), Positives = 142/346 (41%), Gaps = 28/346 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADARTMLAQGFQPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDSDGLIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGLVASIKAKKGLKILS 201 DL+ ++ + A ED +RILR RF A YG + ++ L+ + L Sbjct: 114 QDLKAGILRHVSPA---FDEDPVRILRTARFAARYGFEIAEETMKLMRKMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYF-----LISFFNCNFNQKTLSIPEIKKL 316 S + ++ + + + +L ++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMGLTLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVHEVNQR 284 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 285 LRAPKHCAELAELVCRWHIIFHQVGQLKSRTILNVLKKTDAFRRPE 330 >gi|228952015|ref|ZP_04114110.1| CCA-adding enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229078818|ref|ZP_04211371.1| CCA-adding enzyme [Bacillus cereus Rock4-2] gi|229189717|ref|ZP_04316731.1| CCA-adding enzyme [Bacillus cereus ATCC 10876] gi|228593766|gb|EEK51571.1| CCA-adding enzyme [Bacillus cereus ATCC 10876] gi|228704500|gb|EEL56933.1| CCA-adding enzyme [Bacillus cereus Rock4-2] gi|228807547|gb|EEM54071.1| CCA-adding enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 346 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 147/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLEMKTKQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A+ + L + I Sbjct: 232 VLLAIRTRKEKDWDTV--LLYKTGIHIAEMAERVYEAMIESYDPTSVERVQLMFHALPIQ 289 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 290 -ERQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341 >gi|242279424|ref|YP_002991553.1| polynucleotide adenylyltransferase region [Desulfovibrio salexigens DSM 2638] gi|242122318|gb|ACS80014.1| Polynucleotide adenylyltransferase region [Desulfovibrio salexigens DSM 2638] Length = 891 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 89/426 (20%), Positives = 157/426 (36%), Gaps = 35/426 (8%) Query: 17 NILSLLNKGED-------KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 IL +L + ++ +VGG VRD L+ S D+D+ + +K Sbjct: 471 KILDILETAGEMAAEIGTEAYVVGGFVRDVLLTKSNLDLDLVVESDGIAFAKKLAKRMDG 530 Query: 70 VIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + T +I + D+ T R + V K D RRDFTINAL Sbjct: 531 RAKYHRKFKTAVVILPDGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTINALA 590 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-ID 183 GK++D+ G DL+++TI+ + +ED RI+R RF + K Sbjct: 591 VHINPSSFGKLVDFFGSQRDLKDKTIRVLH--ALSFVEDPTRIMRAIRFEQRFDFKIGGQ 648 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + L+ + + LS R+ E+ +L N L +I M G+ + I + E++ Sbjct: 649 TLNLIKNALKLNLINKLSGYRLTHEMRIILNEANVLRSIERMNELGVLEAIHP-LMELNS 707 Query: 244 DQLSQVIEAEQVFEW----KIDSLL-----RFIVLISWQDKKSILSMAKKFSLPREIRYF 294 + + E E++ W ++ L F+ + K + + +FS R Sbjct: 708 ARSQVIAELERLMSWYSLLYLEPPLSVWKTYFLAMCMGVSKAKMEQIYDRFSFSPSERRE 767 Query: 295 LISFFNCNF----NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQ 350 I + F N + Y V + + +A + + L Sbjct: 768 FIHLRDAVFWAAGNIMNIKQEMKPSEIYETLSPVPLEGVLFIMARTKREMIKKYVSQYLT 827 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 L + +TG+D+ G+ PG L K ++ + E + L K Sbjct: 828 SL------RLKTIDVTGEDLKDLGLEPGPLYSEFLNQVKLACLDGKLKGRDEQIQFLKDK 881 Query: 411 LIASSQ 416 + S + Sbjct: 882 IKKSEK 887 >gi|111226195|ref|YP_716989.1| RNA nucleotidyltransferase [Frankia alni ACN14a] gi|111153727|emb|CAJ65485.1| RNA nucleotidyltransferase [Frankia alni ACN14a] Length = 494 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 165/467 (35%), Gaps = 74/467 (15%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ----------DIDIATTILPDRVMRI 62 + + +VGG+VRD+L+ D+D AT P+RV+ I Sbjct: 25 PAADELGRVFAAHGHLLHLVGGSVRDALLGRPTTGATGAGGAPADLDFATDARPERVLEI 84 Query: 63 FSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-DGRYAKVVFTRDWKADSLRRD 121 I++GT+ + R F+ITT RS+ R +V + +AD RRD Sbjct: 85 TRGWAEATWEAGIAFGTVGLARRGLRFEITTYRSEAYDRQSRNPQVTYGDSLEADLSRRD 144 Query: 122 FTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FT+NA+ G +D GG+ DL ++ +D LRILR RF A G Sbjct: 145 FTVNAMAVSVPGHDFVDLFGGMADLARGVLRTPASPAASFDDDPLRILRAARFEATLG-L 203 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 + + A + L I+S ERI E+ KLL A +P+ + + G+ + +V Sbjct: 204 TPVPELVEAMRARTERLAIVSPERIRDELRKLLLAADPVAGLERLVEIGVADIVLPEVAA 263 Query: 241 ISLDQLSQVIEAEQVFEWK---------------IDSLLRFIVLISWQDKKS-------- 277 + + ++ + + + V+ D +LR+ L+ K Sbjct: 264 MRM-EIDEHHQHKDVYAHTLTVLRQAIALEEPGAPDEVLRWAALLHDIGKPRTRRHIPGG 322 Query: 278 --------------ILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI------------- 310 P+++ + + Sbjct: 323 RVSFHHHEVVGRDMTRRRLAALHFPKDVTDAICRLVYLHLRFHGYGEGEWTDAAVRRYVH 382 Query: 311 ---PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 P++ +L L + AL + ++ L +I + L+G Sbjct: 383 DAGPQLTRLHKLVRSDCTTRNRRKAAALSRTYDSLEERIADLAAREEIAAIRPE---LSG 439 Query: 368 DDVVK-YGIPPGKKVGNILVHCKQEWINSSF---QLSQEDLHHLLRK 410 DD++ G+ P + VG H + + ++ +L R+ Sbjct: 440 DDIMALLGLAPSRLVGQARAHMLEFRFECGLVGREAAEAELFRWARE 486 >gi|262360751|gb|ACY57472.1| tRNA nucleotidyltransferase [Yersinia pestis D106004] Length = 312 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 33/289 (11%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRDSL+NL V + D + P++++++ + K P + + ++Y Sbjct: 4 YLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVFLHP-----VSHEEY 58 Query: 89 FDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R S G + D LRRD T+NA+ G+ ID G DL N Sbjct: 59 ALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLEN 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + DA ED LR+LR RF A + ++ L++++ L L+ E Sbjct: 119 RVLRHVSDA---FGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E K L+ ++P + + G +F +++ + + A + + +ID+ Sbjct: 176 RVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLF------GVPAPEKWHPEIDTG 229 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 + ++ L++A + S +IR+ + C+ K L+ E Sbjct: 230 IHTLM---------TLAIAAQLSPEVDIRFAAL----CHDLGKGLTPKE 265 >gi|229016893|ref|ZP_04173821.1| CCA-adding enzyme [Bacillus cereus AH1273] gi|229023099|ref|ZP_04179613.1| CCA-adding enzyme [Bacillus cereus AH1272] gi|228738245|gb|EEL88727.1| CCA-adding enzyme [Bacillus cereus AH1272] gi|228744454|gb|EEL94528.1| CCA-adding enzyme [Bacillus cereus AH1273] Length = 346 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 74/354 (20%), Positives = 149/354 (42%), Gaps = 15/354 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G++ID G +R + I +GDA R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMIDLFAGQEAIRLKEITTVGDAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLEAKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLQELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 ++K + L Y G + +++ A+ + + + + Sbjct: 232 VLLAIRSRKEKEWDTV--LLYKTGIHIAEMAERVYEAI-IESYNSASVKQVQSLFHALPI 288 Query: 358 WKKPLFPLTGDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V IL + ++ + +E++ L K Sbjct: 289 KNRQEMNVTGNDLLSWADKKPGPWVAEILQNIEEAIVQGDLVNKKENIREWLEK 342 >gi|171320262|ref|ZP_02909318.1| poly(A) polymerase [Burkholderia ambifaria MEX-5] gi|171094491|gb|EDT39549.1| poly(A) polymerase [Burkholderia ambifaria MEX-5] Length = 516 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 33/246 (13%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 67 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD-----G 102 + + + ++ +++T R+ D T G Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 182 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYR 242 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A G I++ + + + R++ E+ KLL + L Sbjct: 243 EDPVRMLRVVRFAAKLG-FEIETHTREPINALADLINNVPAARLFDEMLKLLLSGQALAC 301 Query: 222 IVHMYN 227 + + Sbjct: 302 LQRLRK 307 >gi|239995672|ref|ZP_04716196.1| tRNA nucleotidyltransferase [Alteromonas macleodii ATCC 27126] Length = 392 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 146/401 (36%), Gaps = 46/401 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+N V + D + P+ ++ K P + T + Sbjct: 2 QIYLVGGAVRDALLNRKVVERDYVVVGATPEEMLSQGFTQVGKDFPVFLHPKTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D LRRD T+NA+ D G +ID GG Sbjct: 57 ---EYALARTERKSGKGYTGFVCDASSSVTLEEDLLRRDLTVNAIAQDNLGNLIDPYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ + +A ED LR+ R RF Y ++ L+ S+ L Sbjct: 114 KDLENRLLRHVSEA---FSEDPLRVFRVARFATRYAYLGFTIATETMALMQSMAQSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---EISLDQLSQVIEAEQV 255 LS+ER+W E + L K P + + F +++ + +L+ L + E+ Sbjct: 171 TLSAERVWQETKRSLLEKTPHVFFTVLNQAHGLNDWFTELERNVDTALETLKTAVALEKA 230 Query: 256 FEWKI-------------------DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF-- 294 + + RF L++ ++ + + + ++ Sbjct: 231 ENESVVKYTGSETPLPESSDSETARLITRFTALLTHLSEEEAKQLCSRLKVQNQVSEIVS 290 Query: 295 LISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 L F S ++ LF + + L+ + H + Sbjct: 291 LACKFKGFLLNAQNSPADLLALFNSCDAWRREERFTLLLS-AFAPYAHNKGIDWQRQRKR 349 Query: 355 IIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 I + + D++ G+ G ++ + L K I S Sbjct: 350 IENALSAANQVNVQDIIATGVK-GPEIKDALNQAKLSAIAS 389 >gi|160896704|ref|YP_001562286.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Delftia acidovorans SPH-1] gi|160362288|gb|ABX33901.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Delftia acidovorans SPH-1] Length = 417 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 128/322 (39%), Gaps = 41/322 (12%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 E + +VGGAVRD L+ +V D D + P+++ + P + T + Sbjct: 3 EFQVYMVGGAVRDRLLGRAVHDRDWVVVGATPEQMAERGFMPVGRDFPVFLHPETHE--- 59 Query: 85 RKKYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQ----GKVI 136 + R++ + Y V + D RRD TINA+ A G + Sbjct: 60 -----EYALARTERKSGPGYRGFVVQAAPDVTLEQDLARRDLTINAMAAPPDWDGKGAID 114 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAK 194 D GG DL+ R ++ + DA ED +RILR RF A + E + + L+ + A Sbjct: 115 DPYGGQADLQARVLRHVTDA---FREDPVRILRVARFAARFHEFTVAPETMALMQEMVAA 171 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + L ER+W EI++ L + P + G + + L++L V + + Sbjct: 172 GEVDALVPERVWQEISRGLMERQPSRMFELLRECGALAVLLPE-----LERLWGVPQRAE 226 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 + ++D+ + ++ +L MA + P +RY + + K + ++ Sbjct: 227 -YHPEVDTGVHAMM---------VLDMAAQLDTPLPVRYACL----VHDLGKGTTPADVL 272 Query: 315 KLFYLYGDKVMIAKLKIFLALH 336 + + K+ L Sbjct: 273 PRHIGHEHRSARLAEKVGERLR 294 >gi|167895735|ref|ZP_02483137.1| poly(A) polymerase [Burkholderia pseudomallei 7894] Length = 484 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 35 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 94 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 95 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 150 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 151 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 210 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 211 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 269 Query: 219 LNAIVHMYN 227 L + + Sbjct: 270 LACLKQLRK 278 >gi|149927059|ref|ZP_01915317.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [Limnobacter sp. MED105] gi|149824280|gb|EDM83500.1| Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain [Limnobacter sp. MED105] Length = 393 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 90/412 (21%), Positives = 169/412 (41%), Gaps = 42/412 (10%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRV 59 M+ + +H + ++ L K +VGGAVRD+LM + D D + D + Sbjct: 1 MLPMARHPELQGFQVDPVIEQLPNH-VKVYVVGGAVRDALMGRASSDRDWVVVGATVDHM 59 Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR----DWKA 115 + P + T + + R++ + Y F + Sbjct: 60 LAAGFTPVGSDFPVFLHPRTHE--------EYALARTERKSGHGYKGFTFHAEPSVTLEE 111 Query: 116 DSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFA 175 D RRDFT+NA+ + +G +ID GL DL N+ ++ + A ED LR+LR RF A Sbjct: 112 DLARRDFTVNAMAMNAEGGLIDPFQGLADLENKCMRHVSPA---FSEDPLRVLRLARFLA 168 Query: 176 HYGEKNIDSDG--LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE 233 + + ++ + L ++A LK L ER+++E+ K + + P I + + E Sbjct: 169 RFLDFSVAEETMDLCRELQASGELKHLVPERVYAELTKGMGEEKPSRMIKLISKLNGWGE 228 Query: 234 I-------FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFS 286 + F + D L+ + AE + + + L I ++AK + Sbjct: 229 LAPACSVPFSSFDKPEYDCLNSLSGAEARWVYSLGFFLSLA---------HIKALAKAWR 279 Query: 287 LPREIRYFLISFFNC-NFNQKTLSIPEIKKLFYLYGDKVM-IAKLK-IFLALHYNNLTHQ 343 LPR I + +C F Q+ + P+ F+ D A+L+ + + + + Sbjct: 280 LPRTIEDLSVLACHCLAFVQQQSTDPDSFARFFGQVDLYRKPARLRQVNQLVAQIHGEGR 339 Query: 344 DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 F+ Q ++++ F GD +V + P G++V + + + W+ Sbjct: 340 VHAFVEQAVAELEQGHYKAFL--GDKIVNH--PLGEQVAQVAANARLAWVEE 387 >gi|228964610|ref|ZP_04125718.1| CCA-adding enzyme [Bacillus thuringiensis serovar sotto str. T04001] gi|228795041|gb|EEM42539.1| CCA-adding enzyme [Bacillus thuringiensis serovar sotto str. T04001] Length = 346 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 148/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +I++ A L+ ++ ERI E K+L + + + +F + Sbjct: 117 G-FSIETKTKQAIETYGHLLEHIAIERITVEFEKMLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L+ FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLTATRYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + + + + Sbjct: 232 VLLAIRTRKERGWDTV--LLYKTGIHIAEMAERVYEA-MIESYDPTSVKRVQSMFHVLPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 289 QERQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNIVNEKERIREWLQ 341 >gi|16273496|ref|NP_439748.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae Rd KW20] gi|260580382|ref|ZP_05848211.1| tRNA nucleotidyltransferase [Haemophilus influenzae RdAW] gi|1168822|sp|P45269|CCA_HAEIN RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|1574448|gb|AAC23250.1| tRNA nucleotidyltransferase (cca) [Haemophilus influenzae Rd KW20] gi|260093059|gb|EEW76993.1| tRNA nucleotidyltransferase [Haemophilus influenzae RdAW] Length = 416 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 138/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMAELAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ERIW E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERIWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALYGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|293390381|ref|ZP_06634715.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950915|gb|EFE01034.1| multifunctional CCA protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 425 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 42/363 (11%) Query: 22 LNKGEDKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTI 80 +++ + +VGGAVRD L+NL VQD D P+ +++ K P + T Sbjct: 1 MSENHFQIYLVGGAVRDQLLNLPVQDRDWVIVGATPEALLQQGYHQVGKDFPVFLHPQTK 60 Query: 81 KIICRKKYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 + + R++ + G + + D +RRD TINA+ D QG + Sbjct: 61 E--------EYALARTERKSGAGYTGFICDFSPDINLEQDLIRRDLTINAMAQDLQGNLF 112 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIK 192 D GG DL NR ++ + A +ED LR+LR RF A Y G K + L+ + Sbjct: 113 DPYGGAQDLANRVLRHVSPA---FVEDPLRVLRVARFTARYHYLGFKIAEETLQLMKDLT 169 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 A+ L+ L++ER+W+E K L KNP + G K +F + LD L V Sbjct: 170 AQGELQHLTAERVWAETEKALNEKNPEIYFEILRLVGALKVLFPE-----LDALYGVPNP 224 Query: 253 EQVFEWKIDSLLRFIVLIS-----------WQDKKSILSMAKKFSLPREIRYFLISFFNC 301 + + +IDS + ++++ + ++ + + S+ + Sbjct: 225 AK-YHPEIDSFVHTMLVLKQVTLLSEQVDCHKSAVRFAAICHDLGKAKTPK---QSWPHH 280 Query: 302 NFNQKTLSIPEIK--KLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWK 359 + ++K P K + G +A+L H + + I+++ + W+ Sbjct: 281 HGHEKLGMAPTQSLCKRLKVPGYYQQLAELTCEYHSHIHKIFELRPETIVKLFNTFDVWR 340 Query: 360 KPL 362 KPL Sbjct: 341 KPL 343 >gi|82702011|ref|YP_411577.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196] gi|82410076|gb|ABB74185.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196] Length = 471 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 19/249 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 S + + S L + + IVGGA RD ++ L +D D+AT P+ V +F ++R Sbjct: 44 SSGALKVTSGLQEAGYSAFIVGGAARDLVLGLEPKDFDVATNATPEEVRAVFRRSRI--- 100 Query: 72 PTSISYGTIKIICRKKYFDITTLRS-------------DLITDGRYAKVVFTRDWKADSL 118 + + ++ + +++T R GR + + D+ Sbjct: 101 -IGRRFRLVHVMWGAETVEVSTFRGGPSGETGGLGADEHADEHGRLLRDNVFGSQEEDAR 159 Query: 119 RRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NAL+ D ++ DY+ G DL+ R ++ IGD R ED +R+LR R A Sbjct: 160 RRDFTVNALFFDPVHEEIWDYLNGYEDLKARRLRIIGDPVRRYREDPVRMLRVVRLGAKL 219 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ID D + L + R++ E+ KLL + + L + + G+ + Sbjct: 220 G-MEIDPDTAAPISELAPLLLHVPPSRLFDEMLKLLLSGHALACVTDLQKRGLHHGLLPM 278 Query: 238 VQEISLDQL 246 + I L Sbjct: 279 LDVIREQPL 287 >gi|170725528|ref|YP_001759554.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella woodyi ATCC 51908] gi|226702085|sp|B1KHF1|CCA_SHEWM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|169810875|gb|ACA85459.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Shewanella woodyi ATCC 51908] Length = 413 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 40/344 (11%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+ L ++D D + P+++ + K K P + T + Sbjct: 4 YLVGGAVRDNLLKLPIKDRDYMVVGAAPEQMFELGYKQVGKDFPVFLHPKTQQ------- 56 Query: 89 FDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ T Y + D LRRD TINA+ D +G++ D GG+ D Sbjct: 57 -EYALARTERKTGSGYGGFSCDASPDVTLEEDLLRRDLTINAIAQDDKGELFDPYGGIKD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 + ++ ++ + DA +ED LR+LR RF A + ++ L+ I L+ L Sbjct: 116 IESKMLRHVSDA---FVEDPLRVLRVARFAARFHHLGFTVADETLALMTKISQSGELEAL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +SER++ E++K L +NP I + + +F ++ L V + E+ + +I Sbjct: 173 TSERVFLELDKALSTQNPQIFIEVLNQCQALEILFPEIHA-----LFGVPQPEK-WHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + ++ +L+ A K S +R+ + + K LS + + Sbjct: 227 DTGIHTLM---------VLAQAAKLSDENSVRFAAL----VHDLGKALSPKATLPKHHGH 273 Query: 321 GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 G + +A +K+ A ++D ++ +H + L P Sbjct: 274 G-QSGLALIKVLCARAKVPNEYRDLALLVSDQHQNVHNIRELRP 316 >gi|238918485|ref|YP_002931999.1| hypothetical protein NT01EI_0531 [Edwardsiella ictaluri 93-146] gi|259585842|sp|C5BHG5|CCA_EDWI9 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|238868053|gb|ACR67764.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 414 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 149/362 (41%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD + L QD D + P ++ + K P + + Sbjct: 2 KTYLVGGAVRDKYLQLPTQDRDWVVVGAAPQTLLAQGYQQVGKDFPVFLHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y F D + D LRRD TINA+ D +G++ID GGL Sbjct: 54 SKEEYALARTERKAGQGYTGFSTYFAPDVTLEQDLLRRDLTINAMAEDDEGQLIDPYGGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGLVASIKAKKGLK 198 DL+ R ++ + +A +ED LR+LR RF A + + + L+ + + L Sbjct: 114 QDLQQRQLRHVSEA---FVEDPLRVLRVARFAARFAPLGFEVAAPTLALMQQMSQQGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L P + + G +F ++ D+L V Q + Sbjct: 171 HLTPERVWLETEKALSGPVPQVYFQVLRDCGALAVLFPEI-----DRLFGVPAPAQ-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA S +R+ ++ + K L+ P + Sbjct: 225 EIDTGIHTLL---------TLAMASHLSDDVAVRFAALT----HDVGKGLTNPNFWPHHH 271 Query: 319 LYGD------KVMIAKLK--------IFLALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + M +L+ L Y++L H +L++L I W++ Sbjct: 272 GHGPAGVRLVREMCQRLRTPNPVRDLALLVAEYHDLIHTVERLRPATLLKLLDTIDVWRR 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|229195837|ref|ZP_04322596.1| CCA-adding enzyme [Bacillus cereus m1293] gi|228587610|gb|EEK45669.1| CCA-adding enzyme [Bacillus cereus m1293] Length = 346 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 72/354 (20%), Positives = 149/354 (42%), Gaps = 15/354 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++++ A L+ ++ ERI E KLL + A+ + +F + Sbjct: 117 G-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEEKLLKATQYKWDSFEADIEAWAFFLYCIGEEHPAVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + H + + + Sbjct: 232 VLLTIRKRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIESYDHTAVNRVQTLFQALPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ ++ + + +E + L++ Sbjct: 289 KSRQEMNVTGNDLLNWANKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342 >gi|145297590|ref|YP_001140431.1| multifunctional CCA protein [Aeromonas salmonicida subsp. salmonicida A449] gi|166233840|sp|A4SIG1|CCA_AERS4 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|142850362|gb|ABO88683.1| multifunctional CCA protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 413 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L D D + ++++ + + P + T + Sbjct: 2 QTYLVGGAVRDRLLGLPQGDRDHLVVGATVEQMLALGFSQVGRDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y V + D LRRD TINA+ D++G++ D GG+ Sbjct: 57 ---EYALARTERKQGRGYTGFVCHASPEVTLEQDLLRRDLTINAIAEDEEGRLHDPYGGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LRILR RF A + + ++ L+ + L Sbjct: 114 QDLEQRMLRHVSPA---FAEDPLRILRVARFAARFHAQGFVVAPETLALMREMTDAGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E+ K+L + P + G K +F ++ + + A + Sbjct: 171 HLTPERVWKELEKVLLGQTPQVFFEVLRECGALKALFPELDALF------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L+ A + S +R+ + C+ K L+ P + Sbjct: 225 EIDTGIHTLM---------VLAQACRLSPELAVRFAAL----CHDFGKGLTPPAFWPSHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 +G K + ++ F +D ++ L IH L P T Sbjct: 272 GHGQKGLP-LIRDFCERFRVPNDCRDLALLVSDLHTHIHIAFELKPAT 318 >gi|167912386|ref|ZP_02499477.1| poly(A) polymerase [Burkholderia pseudomallei 112] Length = 483 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 34 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 93 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 94 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 149 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 150 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 209 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 210 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 268 Query: 219 LNAIVHMYN 227 L + + Sbjct: 269 LACLKQLRK 277 >gi|269103522|ref|ZP_06156219.1| tRNA nucleotidyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163420|gb|EEZ41916.1| tRNA nucleotidyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 410 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 141/347 (40%), Gaps = 27/347 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+ L + D D + P++++ + P + T ++ Sbjct: 2 QVYLVGGAVRDALLQLPIVDKDWVVVGSTPEQMLAQGFEQVGTDFPVFLHPKT-----KQ 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R S G + D +RRD TINA+ + G +ID GG DL Sbjct: 57 EHALARTERKSGRGYTGFICDFTPDVTLEQDLIRRDLTINAIAQAKDGTLIDPYGGQQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +R ++ + A +ED LR+LR RF A + ++ L+ + L L+ Sbjct: 117 EHRILRHVSPA---FVEDPLRVLRVARFAARFAHMGFTVAAETMALMQEMVISGELAALT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E K L ++NP + + G + + ++ D L + + E+ + +ID Sbjct: 174 PERVWKEWEKSLSSQNPEIFLTVLRQCGALQVVMPEI-----DALFGIPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + L++ Q + +F+ +S + KT + +K + L Sbjct: 228 CGIHTL-LVAKQAAQLSQDKTIRFAAQLHDLGKALSPVEDLPHHKTHCLDGLKPIKALCQ 286 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCF------ILQVLSDIIHWKKPL 362 + + + T F +++ I W+KP Sbjct: 287 RLRVPNDYRDCALMVCAQHTKVHHAFEMKASTFVKIFDQIDAWRKPE 333 >gi|167817255|ref|ZP_02448935.1| poly(A) polymerase [Burkholderia pseudomallei 91] Length = 485 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 36 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 95 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 96 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 151 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 152 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 211 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 212 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 270 Query: 219 LNAIVHMYN 227 L + + Sbjct: 271 LACLKQLRK 279 >gi|76789141|ref|YP_328227.1| polyA polymerase [Chlamydia trachomatis A/HAR-13] gi|76167671|gb|AAX50679.1| polyA polymerase [Chlamydia trachomatis A/HAR-13] Length = 425 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 20/306 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 45 HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC----ILV 100 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + I + ++ T RS D K + D LRRDFTIN L+ D Sbjct: 101 GKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS 160 Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY GG+ DL++R ++ IGD R +D +R+LR + + Y +D L A Sbjct: 161 AEIIIDYTGGVEDLKSRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEALQ 219 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 ++ L S R++ EI K+L + + + +F + + LS+ ++ Sbjct: 220 ESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAF--SLSKTLQ 277 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F L + K S + I F I FN + Sbjct: 278 DQT-----------FACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTM 326 Query: 312 EIKKLF 317 I+ +F Sbjct: 327 TIQSIF 332 >gi|328952892|ref|YP_004370226.1| poly(A) polymerase [Desulfobacca acetoxidans DSM 11109] gi|328453216|gb|AEB09045.1| poly(A) polymerase [Desulfobacca acetoxidans DSM 11109] Length = 417 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 80/353 (22%), Positives = 144/353 (40%), Gaps = 27/353 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D++ +L L+ + +VGG +RD + +D DIAT P + RIF +R Sbjct: 22 DVDVLKVLYRLHHKGHLAYLVGGGIRDLWLGKQPKDFDIATDAHPQEIRRIFRNSRI--- 78 Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGR---YAKVVFTRDWKADSLRRDFTINAL 127 + +++ K +++T RS D A D+ RRD TINAL Sbjct: 79 -IGKRFRLVQVFFKGGKIVEVSTFRSRSEFDAEVDMLAPNNTFGSPVEDAQRRDLTINAL 137 Query: 128 YADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + + ++DYVGG+ DL++ I+ +G R D +R+LR R + G + ID Sbjct: 138 FYNIADFSILDYVGGVKDLQDGIIRVVGPPEIRFQRDPVRMLRVLRHASRTGFQ-IDPTA 196 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL-DQ 245 A + +++ S R+ E+ K + + M G+ IF ++E + Sbjct: 197 WSAIQSYRHLIRLCSPARVRDELLKDFRSGYCRDFFQLMLASGLLAAIFPHIEETTDGAA 256 Query: 246 LSQVIEAEQVFEWKIDSLL-----------RFIVLISWQDKKSILSMAK----KFSLPRE 290 S + Q ID L LI + +K ++L + + + Sbjct: 257 FSGLQPRMQAVFGTIDLLTMGGLSLSEAFFWTAFLIPFLEKVTVLPFQQIEPETVAKYVD 316 Query: 291 IRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNNLTH 342 + F ++ + + + +L + G + + A+LK L L L + Sbjct: 317 ESLSPLEFARGRRDEVIMRLVTVSQLMHQLGAGRRVSARLKRRLCLPEAWLLY 369 >gi|84394161|ref|ZP_00992893.1| tRNA nucleotidyltransferase [Vibrio splendidus 12B01] gi|84375220|gb|EAP92135.1| tRNA nucleotidyltransferase [Vibrio splendidus 12B01] Length = 438 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 83/426 (19%), Positives = 151/426 (35%), Gaps = 73/426 (17%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + +VGGAVRD L+N+ D D + P + + K P + T + Sbjct: 25 KDNGLQRYLVGGAVRDKLLNIDSYDRDWVVVGSTPQEMENLGFTAVGKDFPVFLHPKTKE 84 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVID 137 + R++ + Y F D + D +RRD TINA+ D +G++ D Sbjct: 85 --------EHALARTERKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQDDKGQLYD 136 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKA 193 G DL +R ++ + DA +ED LR+LR RF A N ++ +++ I Sbjct: 137 PYHGQKDLSDRVLRHVSDA---FVEDPLRVLRVARFAAKLHHLNFTVAPETMVMMSEIVQ 193 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L L++ER+W E +K L +P + + G + ++ D L V + E Sbjct: 194 SGELAHLTAERVWQEWHKSLSTPHPEVFLSVLKECGALAVVLPEI-----DALFGVPQPE 248 Query: 254 QVFEWKIDSL------------------LRFIVLISWQDK-------------------K 276 + + +ID+ +RF + K K Sbjct: 249 K-WHPEIDTGIHTLMVAQQAARLSSSLPVRFAAQVHDLGKGVTPESEWPSHKMHCHTGLK 307 Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFN-------QKTLSIPEIKKLFYLYGDKVMIAKL 329 I + ++ +P E R + + N + T + + K + L Sbjct: 308 IIKKLCERVRVPNEFRDLALLVCEQHSNIHRAGELKPTTFLKVLNKFDVWRKPDRLDDIL 367 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 A H +D + + ++ + + ++ G GK + + Sbjct: 368 LCCQADHAGRKGLEDQPYPQKARFEVAYQAALQVEVKA--IIADGFK-GKDIREEQEKRR 424 Query: 390 QEWINS 395 I S Sbjct: 425 AIAIES 430 >gi|312795197|ref|YP_004028119.1| Poly(A) polymerase / tRNA-nucleotidyltransferase [Burkholderia rhizoxinica HKI 454] gi|312166972|emb|CBW73975.1| Poly(A) polymerase (EC 2.7.7.19) / tRNA-nucleotidyltransferase (EC 2.7.7.25) [Burkholderia rhizoxinica HKI 454] Length = 572 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 39/253 (15%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 I + L + ++ IVGGAVRD L+N++ +D D+AT PD V+++F + R Sbjct: 115 PALISRHAIRVTDTLQQAGFRAFIVGGAVRDLLLNIAPKDFDVATDATPDEVVKLFRRAR 174 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS----------------------------DLI 99 + + + ++ +++T R+ D Sbjct: 175 L----IGRRFQIVHVQFGQEIIEVSTFRALMDAVPADVGSADSAPAAPPRKLRRGELDRR 230 Query: 100 TD-----GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFI 153 T GR + + D+ RRDFT+NA+Y D + V+DY G++D+R R ++ I Sbjct: 231 THAVDASGRVLRDNVWGEQHEDATRRDFTVNAMYYDPATQTVLDYHRGMDDIRARVLRMI 290 Query: 154 GDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLL 213 G+ R ED +R+LR RF A G I+S K + + + R++ E+ KLL Sbjct: 291 GEPATRFREDPVRMLRVVRFAAKLG-FTIESSTHAPIAKLADLINNVPAARLFDEMLKLL 349 Query: 214 EAKNPLNAIVHMY 226 + + L + + Sbjct: 350 LSGHALGCLKQLR 362 >gi|329943132|ref|ZP_08291906.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10] gi|332287715|ref|YP_004422616.1| poly(A) polymerase [Chlamydophila psittaci 6BC] gi|313848289|emb|CBY17290.1| putative poly(A) polymerase [Chlamydophila psittaci RD1] gi|325507270|gb|ADZ18908.1| poly(A) polymerase [Chlamydophila psittaci 6BC] gi|328814679|gb|EGF84669.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10] Length = 428 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 7/227 (3%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 ++++ L K K+ IVGG +RD L+N + +D DI+T+ P+ + +F I Sbjct: 42 SPHALSVVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNC----I 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDGR-YAKVVFTRDWKADSLRRDFTINALYAD 130 + I + +++T RS + K + D LRRDFTIN L+ D Sbjct: 98 LVGKRFRLAHIRFSNQIIEVSTFRSGSADEDCLITKDNLWGTAEEDVLRRDFTINGLFYD 157 Query: 131 QQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +IDY GG++DL NR ++ IGD R +D +R+LR + A +D L A Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILAR-AHFTVDPKTLEA 216 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + + L S R++ E+ K+L + I + +F Sbjct: 217 LQECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFP 263 >gi|170698323|ref|ZP_02889398.1| poly(A) polymerase [Burkholderia ambifaria IOP40-10] gi|170136742|gb|EDT04995.1| poly(A) polymerase [Burkholderia ambifaria IOP40-10] Length = 512 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 33/246 (13%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 67 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD-----G 102 + + + ++ +++T R+ D T G Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 182 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYR 242 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A G I++ + + + R++ E+ KLL + L Sbjct: 243 EDPVRMLRVVRFAAKLG-FEIETHTREPINALADLINNVPAARLFDEMLKLLLSGQALAC 301 Query: 222 IVHMYN 227 + + Sbjct: 302 LQRLRK 307 >gi|167837745|ref|ZP_02464628.1| polyA polymerase [Burkholderia thailandensis MSMB43] Length = 517 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 68 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 127 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 128 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 183 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 184 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 243 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 244 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 302 Query: 219 LNAIVHMYN 227 L + + Sbjct: 303 LACLKQLRR 311 >gi|291612637|ref|YP_003522794.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sideroxydans lithotrophicus ES-1] gi|291582749|gb|ADE10407.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Sideroxydans lithotrophicus ES-1] Length = 409 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 135/346 (39%), Gaps = 28/346 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ VGGAVRD L+ L VQD D + P++++ + P + T + Sbjct: 7 KTYCVGGAVRDRLLGLPVQDHDWVVVGSTPEQMVARGFRPVGADFPVFLHPDTHE----- 61 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D LRRDFTINA+ D G +ID GG Sbjct: 62 ---EYALARTERKVAQGYKGFTVYTSPDVTLEQDLLRRDFTINAIAEDADGNLIDPYGGQ 118 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKAKKGLKILS 201 DL+ ++ + DA ED +RILR RF A +G ++ L+ + + L Sbjct: 119 TDLKAGILRHVSDA---FAEDPVRILRGARFAARFGFTFAPETLALMRKMVDNGEVDALV 175 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ + L K P + G K+I + +D L V + + +ID Sbjct: 176 AERVWQELARGLMEKQPSRFFTTLRECGALKKILPE-----MDALFGVPQPAH-YHPEID 229 Query: 262 SLLRFIVLISWQDK--KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYL 319 + +++I K + + + S+ +K L Sbjct: 230 CGIHVLMVIDDTAKCGHPLEVRFAALGHDLGKATTPEDTLPRHIGHEQRSVDLLKGLCER 289 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIHWKKPL 362 L + +A +++++ I++V W+KP Sbjct: 290 LRVPADCRDLAMLVARYHSHVHKARELRADTIVKVFDACDLWRKPE 335 >gi|161870084|ref|YP_001599254.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria meningitidis 053442] gi|189081874|sp|A9LZC1|CCA_NEIM0 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|161595637|gb|ABX73297.1| tRNA nucleotidyltransferase [Neisseria meningitidis 053442] Length = 417 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 120/300 (40%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDAGGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 225 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPRHHGHD 271 >gi|229121178|ref|ZP_04250415.1| CCA-adding enzyme [Bacillus cereus 95/8201] gi|228662297|gb|EEL17900.1| CCA-adding enzyme [Bacillus cereus 95/8201] Length = 346 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 70/354 (19%), Positives = 147/354 (41%), Gaps = 15/354 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ +++TT R++ D R V F R + D Sbjct: 1 MAIFPRH----VPVGLEHGTVIVVENGAPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYNWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + H + + + Sbjct: 232 VLLTIRKRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIESYDHTSVERVQTLFQALPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ ++ + + +E + L++ Sbjct: 289 KSRQEMDVTGNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342 >gi|91228362|ref|ZP_01262289.1| tRNA nucleotidyltransferase [Vibrio alginolyticus 12G01] gi|91188061|gb|EAS74366.1| tRNA nucleotidyltransferase [Vibrio alginolyticus 12G01] Length = 406 Score = 223 bits (568), Expect = 6e-56, Method: Composition-based stats. Identities = 74/358 (20%), Positives = 136/358 (37%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 2 QVYLVGGAVRDKLLGIDSYDNDWVVVGATPEMMLSQGYTAVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ + G + D GG Sbjct: 54 SKEEYALARTERKSGSGYTGFECFFDQNVTLEEDLIRRDLTINAMAMESDGTIHDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL ++ ++ + DA +ED LR+LR RF A + N ++ L+ + L Sbjct: 114 QDLNDKLLRHVSDA---FIEDPLRVLRVARFAAKLADLNFTVADETMRLMRHMAESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + + G + ++ D L V + E+ + Sbjct: 171 TLTPERVWQEWHKSLSTPRPDIFLSVLRDCGALTVVLPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A K S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAEQAAKLSNSLPVRFAAQVHDLGKGVTPESEWPSHKMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 KL ++V + LAL + I+++L+ + W+K Sbjct: 276 TGLKLIKKLCERVRVPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKLDVWRKSE 333 >gi|323697882|ref|ZP_08109794.1| Polynucleotide adenylyltransferase region [Desulfovibrio sp. ND132] gi|323457814|gb|EGB13679.1| Polynucleotide adenylyltransferase region [Desulfovibrio desulfuricans ND132] Length = 895 Score = 223 bits (568), Expect = 6e-56, Method: Composition-based stats. Identities = 85/419 (20%), Positives = 153/419 (36%), Gaps = 29/419 (6%) Query: 16 INILSLLNKGED-------KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 +L LL + + + VGG VRD L+ D+D+ R F+ Sbjct: 469 QRMLDLLKEAGELGTDMGWEVYAVGGFVRDILLGRPNLDLDLVVEGDGIAFARRFAAKLG 528 Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + T +I + D+ T R + V K D RRDFT+NAL Sbjct: 529 GRVKAHSKFKTAVVILDDGQRVDVATARLEYYEYPAALPTVELSSIKMDLYRRDFTVNAL 588 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-I 182 G+++D+ G D+RN+TI+ + +ED RILR RF + + Sbjct: 589 ALRINPGRYGQLVDFFGAERDIRNKTIRVLH--SLSFVEDPTRILRAIRFERRFDFQIGG 646 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + L+ + + K LS R+ E+ ++ ++PL ++ M GI + I + Sbjct: 647 QTMRLIKNALSLKLFSKLSGTRVMHELQLIMNEEDPLACLLRMQELGIMEAIHPLLSLDK 706 Query: 243 -----LDQLSQVIEAEQVFEWKIDSL---LRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 L +L +V ++ + + L + + + I + + R Sbjct: 707 ERVQILTELVKVHNWYKLLYLEPPVVPWKLYLLGMTMGIKRDQIDQVTGRLHFTRREERD 766 Query: 295 LISFFNC--NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352 + K + E + + ++ L L + I Q L Sbjct: 767 FFQLRDQIGEALMKLMGWKEGRSRLSRLYKILHPLPVEGILFLMARSRKEYIRRNISQYL 826 Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 + + + + + G D+ GI PG IL I+ + E L +L +KL Sbjct: 827 ARLQYVEIE---VNGKDLKNIGIEPGPIYAIILDKLMTAKIDGRAETRHEQL-NLAKKL 881 >gi|221214419|ref|ZP_03587390.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD1] gi|221165676|gb|EED98151.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD1] Length = 512 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 33/248 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD---- 101 + + + ++ +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPRRLKRDELDRRTHAVDA 180 Query: 102 -GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHR 159 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 181 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR 240 Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 ED +R+LR RF A G I+ + + + R++ E+ KLL + + L Sbjct: 241 YREDPVRMLRVVRFAAKLG-FEIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHAL 299 Query: 220 NAIVHMYN 227 + + Sbjct: 300 ACLQRLRK 307 >gi|150390292|ref|YP_001320341.1| polynucleotide adenylyltransferase region [Alkaliphilus metalliredigens QYMF] gi|149950154|gb|ABR48682.1| Polynucleotide adenylyltransferase region [Alkaliphilus metalliredigens QYMF] Length = 875 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 86/402 (21%), Positives = 158/402 (39%), Gaps = 18/402 (4%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI-IC 84 + IVGG VRD L+ QD+D + ++ + +GT I + Sbjct: 472 GNDVFIVGGFVRDFLLGEENQDLDFVVEGDGIAFAQALNEIIQGRLTIHEKFGTATIQLP 531 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVG 140 K+ D+ T R + V +D RRDFTINA+ G++IDY G Sbjct: 532 DKRTLDVVTARREYYEYPAAMPQVEKSSIWSDLFRRDFTINAMAIQLNKSKFGQLIDYFG 591 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKI 199 G+ DL ++ I+ + + +ED RI R RF D + L Sbjct: 592 GIQDLEDKNIRVLYN--LSFVEDPTRIFRAIRFSTRLNFNIEDETKTFIHEAIKDGMLDR 649 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-----ISLDQLSQVIEAEQ 254 LS+ER+ EI + KN I+ + + + I +Q L L + I + Sbjct: 650 LSAERLREEILNTILEKNIQENILSLDRFKVLEIIHPKLQASQANVEKLQTLKETINYFR 709 Query: 255 VFEWKIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEI 313 +E + D + + IVL+ + + + + + N+K + Sbjct: 710 TYESRPDEIEVVLIVLMHLLSDLNEHDLVESLNKLIANKGNYSKIKETLENRKIIYEQLK 769 Query: 314 KKLFYLYGDKVMIAKLKIF-LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 ++ Y ++ + + + +YN+ H L L ++ K+ ++G+D++K Sbjct: 770 QEDLNSYDLYQLLNQFSLESIIYYYNDCDHSYVKHYL--LFYVLKLKEIHVEISGEDLIK 827 Query: 373 YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 GI PG +L +E + + +E++ ++L S Sbjct: 828 LGIKPGPIFRIVLERVLEEKVKGNIYRREEEI-QFAQQLYRS 868 >gi|285017637|ref|YP_003375348.1| multifunctional cca protein [includes: cca-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA cca-pyrophosphorylase) (tRNA-nt); 2'-nucleotidase; 2', 3'-cyclic phosphodiesterase ; phosphatase] [Xanthomonas albilineans GPE PC73] gi|283472855|emb|CBA15360.1| hypothetical multifunctional cca protein [includes: cca-adding enzyme (trna nucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trna cca-pyrophosphorylase) (trna-nt); 2'-nucleotidase; 2', 3'-cyclic phosphodiesterase ; phosphatase] [Xanthomonas albilineans] Length = 417 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 86/411 (20%), Positives = 160/411 (38%), Gaps = 75/411 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+ L D D + PD+++ + K + P + + + Sbjct: 2 KTYLVGGAVRDALLGLPPGDRDWVVVGATPDQLLALGYKQVGRDFPVFLHPHSGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D RRDFTINA+ D+ G+++D GG Sbjct: 57 ---EYALARTERKSGRGYHGFVIQADPSVTLEEDLQRRDFTINAIARDEDDGRLLDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + DL+ R ++ +G A ED LR+LR RF A D+ L+ ++ A L Sbjct: 114 VRDLQRRVLRHVGPA---FGEDPLRVLRAARFMARLAPLGFQIAPDTMALMRAMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 + L ER+W E+ + L + P + +++ + + + LD L V + + + Sbjct: 171 EALVPERVWQELRRSLASAQPSAFLRTLHDATALRCVLPE-----LDALYGVPQRAE-YH 224 Query: 258 WKIDSLLR-------------------FIVLISWQDKK-------------------SIL 279 +ID+ F L K ++ Sbjct: 225 PEIDTGRHQELVSDMAARLAPGNALIGFAALTHDLGKALTPPAEWPRHLMHEQRGVPALH 284 Query: 280 SMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKI-F 332 + ++ +P+E R + N + ++ E+ + + IA+L + Sbjct: 285 GLCERLKVPQEHRQLAEIACREHLNVHRLAELRDRTVHELLQRCDGFRKPERIAQLALVC 344 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 A L +D + D+ H + D+V G+ G ++G Sbjct: 345 EADKRGRLGSEDADYPQG--RDLQHLHAAALAINARDLVAQGLS-GPQIGE 392 >gi|167825666|ref|ZP_02457137.1| poly(A) polymerase [Burkholderia pseudomallei 9] Length = 483 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 34 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 93 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 94 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 149 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 150 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 209 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 210 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 268 Query: 219 LNAIVHMYN 227 L + + Sbjct: 269 LACLKQLRK 277 >gi|304387497|ref|ZP_07369686.1| multifunctional CCA protein [Neisseria meningitidis ATCC 13091] gi|304338384|gb|EFM04505.1| multifunctional CCA protein [Neisseria meningitidis ATCC 13091] Length = 417 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 139/347 (40%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + A L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIKLMRQMVANGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQELAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIR------YFLISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ ++++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|48428744|gb|AAT42393.1| tRNA nucleotidyltransferase polyA polymerase [Collimonas fungivorans Ter331] Length = 408 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 24/257 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K VGGAVRD L+ L V+D D + PD ++ + K P + T + Sbjct: 2 KVFAVGGAVRDELLGLPVKDRDYVVVGATPDDMLAQGFRPVGKDFPVFLHPDTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y VF D + D +RRD TINA+ G V D G Sbjct: 57 ---EYALARTERKTAPGYKGFVFHTDPDVTLEQDLVRRDLTINAIARAGDGTVADPFNGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL++R + + DA ED +RILR RF A + + + + L+ + A + L Sbjct: 114 RDLQDRVFRHVSDA---FAEDPVRILRVARFAARFTDFTVAPETNALMQRMVAAGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ + L P + G I + LD L + + E+ + +I Sbjct: 171 VPERVWQELARGLMESRPSRMFEVLRACGALARILPE-----LDVLWGIPQPEK-YHPEI 224 Query: 261 DSLLRFIVLISWQDKKS 277 D+ + ++++ ++ Sbjct: 225 DTGVHVMMVVDTAAAEN 241 >gi|238021942|ref|ZP_04602368.1| hypothetical protein GCWU000324_01847 [Kingella oralis ATCC 51147] gi|237866556|gb|EEP67598.1| hypothetical protein GCWU000324_01847 [Kingella oralis ATCC 51147] Length = 411 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 74/274 (27%), Positives = 119/274 (43%), Gaps = 30/274 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V+D D + D ++R + K P + T + Sbjct: 2 QIYLVGGAVRDQLLGLPVKDRDWVVVGADADELLRQGYQPVGKDFPVFLHPETRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D LRRD TINA+ D G +ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFAFYADKSITLEQDLLRRDLTINAMAQDVSGCLIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 +DL+++ ++ + A ED +RILR RF A YG ++ L+ + A L Sbjct: 114 SDLQHKILRHVSPA---FAEDPVRILRTARFAARYGFAVAPETMQLMRDMVAAGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L NP I + + G + +V L V + + +ID Sbjct: 171 AERVWQELAKGLMEANPRRMIEILRDCGALAILLPEVNA-----LFGVPQRVD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + ++++ + A +LP L Sbjct: 225 TGEHTLLVLQ-------RAAALGLTLPERYAALL 251 >gi|153839924|ref|ZP_01992591.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ3810] gi|149746556|gb|EDM57544.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ3810] Length = 406 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 76/358 (21%), Positives = 134/358 (37%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 2 QVYLVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ D G++ D GG Sbjct: 54 NKEEHALARTERKSGSGYTGFDCFFDPSVTLEEDLIRRDLTINAMAMDDSGQLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ + DA +ED LR+LR RF A ++ L+ + L Sbjct: 114 ADLNNRILRHVSDA---FVEDPLRVLRVARFAAKLASLGFTVAKETMQLMRDMADSGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + + G + ++ D L V + E+ + Sbjct: 171 TLTPERVWQEWHKSLSTPRPDVFLSVLRDCGALAVVLPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A K S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAEQAAKLSTSLPVRFAAQVHDLGKGVTPESEWPSHKMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 KL ++V + LAL + I+++L+ W+K Sbjct: 276 TGLKLIKKLCERVRVPNEFKDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKSE 333 >gi|170732080|ref|YP_001764027.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3] gi|169815322|gb|ACA89905.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3] Length = 518 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 35/250 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS------------------------DLITD-- 101 + + + + +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAV 180 Query: 102 ---GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAH 157 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 181 DASGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPA 240 Query: 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 R ED +R+LR RF A G I+ + + + R++ E+ KLL + + Sbjct: 241 TRFREDPVRMLRVVRFAAKLG-FEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGH 299 Query: 218 PLNAIVHMYN 227 L + + Sbjct: 300 ALACLQRLRK 309 >gi|172059737|ref|YP_001807389.1| poly(A) polymerase [Burkholderia ambifaria MC40-6] gi|171992254|gb|ACB63173.1| poly(A) polymerase [Burkholderia ambifaria MC40-6] Length = 512 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 33/246 (13%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 67 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 125 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD-----G 102 + + + ++ +++T R+ D T G Sbjct: 126 ---IGRRFQIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 182 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 183 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYR 242 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A G I++ + + + R++ E+ KLL + L Sbjct: 243 EDPVRMLRVVRFAAKLG-FEIETHTREPINALADLINNVPAARLFDEMLKLLLSGQALAC 301 Query: 222 IVHMYN 227 + + Sbjct: 302 LQRLRK 307 >gi|261392497|emb|CAX50048.1| multifunctional CCA protein [includes: CCA-adding enzyme (tRNA nucleotidyltransferase; tRNA adenylyl-/cytidylyl-transferase; tRNA CCA-pyrophosphorylase; tRNA-NT) and 2'-nucleotidase and 2',3'-cyclic phosphodiesterase and phosphatase] [Neisseria meningitidis 8013] Length = 417 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 141/347 (40%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVPPA---FAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKF-SLPREIRYF-----LISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ +++ +L ++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|237804757|ref|YP_002888911.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273057|emb|CAX09970.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT] Length = 425 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 20/306 (6%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 ++++ L K ++ IVGG +RD L+ +D DI+T+ P+ V +F I Sbjct: 45 HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNC----ILV 100 Query: 74 SISYGTIKIICRKKYFDITTLRSDL-ITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + I + ++ T RS D K + D LRRDFTIN L+ D Sbjct: 101 GKRFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS 160 Query: 133 GK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + +IDY GG+ DL+NR +K IGD R +D +R+LR + + Y +D L A Sbjct: 161 AEIIIDYTGGVEDLKNRYLKTIGDPFLRFKQDPVRMLRLLKILSRYA-FTVDPKTLEALQ 219 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 ++ L S R++ EI K+L + + + +F + + LS+ ++ Sbjct: 220 ESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAF--SLSKTLQ 277 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 + F L + K S + I F I FN + Sbjct: 278 DQT-----------FACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTM 326 Query: 312 EIKKLF 317 I+ +F Sbjct: 327 TIQSIF 332 >gi|167920340|ref|ZP_02507431.1| poly(A) polymerase [Burkholderia pseudomallei BCC215] Length = 488 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 39 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 98 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 99 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 154 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 155 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 214 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 215 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 273 Query: 219 LNAIVHMYN 227 L + + Sbjct: 274 LACLKQLRK 282 >gi|88797582|ref|ZP_01113171.1| tRNA nucleotidyl transferase [Reinekea sp. MED297] gi|88779754|gb|EAR10940.1| tRNA nucleotidyl transferase [Reinekea sp. MED297] Length = 412 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 85/424 (20%), Positives = 157/424 (37%), Gaps = 73/424 (17%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD +NL V+D D + P +++ + K P + T + Sbjct: 4 YLVGGAVRDQYLNLPVKDRDWVVVGARPQQLLDLGYKQVGADFPVFLHPQTHE------- 56 Query: 89 FDITTLRSDLITDGRYA--KVVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + Y+ V F D + D RRD TINA+ + G++ D GL D Sbjct: 57 -EYALARTERKSGHGYSGFNVHFDPDVTLEDDLARRDLTINAMAQAENGELFDPYQGLQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L + ++ + +A ED LR+LR RF A Y ++ L+ S+ L L Sbjct: 116 LEQKKLRHVTEA---FREDPLRVLRVARFAARYDHLGFTVADETLQLMHSMVTSGELAYL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ER+W+E++K L P + G K +F + LD+L V + + + +I Sbjct: 173 TPERVWTELSKALTEATPSTFFNILRQCGALKVVFPE-----LDRLFGVPQPMR-WHPEI 226 Query: 261 DSLLR------------------FIVLISWQDK-------------------KSILSMAK 283 D+ + F L K I +AK Sbjct: 227 DTGIHVLKALDTARKQTNQVATLFASLCHDLGKGLTPSAHWPSHRGHESLGADLIPGLAK 286 Query: 284 KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-------KVMIAKLKIFLALH 336 K+ P+++ + + + + + L GD + + + A Sbjct: 287 KYRWPKQVADLTEKVARYHTHCHRIDELKPSTIVKLLGDLNAFRQPETVENFVLACQADA 346 Query: 337 YNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSS 396 + T + + + +T + G+ GK +G + + + + + Sbjct: 347 RGRSGFEQTDYPQG--DVLKACLEACIDVTAQPFIDDGLT-GKAIGEAMNSARVQAVANI 403 Query: 397 FQLS 400 + S Sbjct: 404 VRPS 407 >gi|269967431|ref|ZP_06181491.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio alginolyticus 40B] gi|269828019|gb|EEZ82293.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio alginolyticus 40B] Length = 406 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 75/358 (20%), Positives = 137/358 (38%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 2 QVYLVGGAVRDKLLGIDSYDNDWVVVGATPEMMLSQGYTAVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ + G + D GG Sbjct: 54 SKEEHALARTERKSGSGYTGFECFFDQNVTLEEDLIRRDLTINAMAMESDGTIHDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL ++ ++ + DA +ED LR+LR RF A + N ++ L+ + L Sbjct: 114 QDLNDKLLRHVSDA---FIEDPLRVLRVARFAAKLADLNFTVADETMRLMRHMAESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + + G + ++ D L V + E+ + Sbjct: 171 TLTPERVWQEWHKSLSTPRPDIFLSVLRDCGALTVVLPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A K S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAEQAAKLSNSLPVRFAAQVHDLGKGVTPESEWPSHKMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHY-------NNLTHQDTCFILQVLSDIIHWKKPL 362 KL ++V + LAL + I+++L+ + W+KP Sbjct: 276 TGLKLIKKLCERVRVPNEFRDLALMVCEQHSNTHRAAELKPQTIIKILNKLDVWRKPE 333 >gi|148828409|ref|YP_001293162.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae PittGG] gi|166233857|sp|A5UJ23|CCA_HAEIG RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|148719651|gb|ABR00779.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittGG] Length = 416 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 138/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KIYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMAELAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALHGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|167904126|ref|ZP_02491331.1| poly(A) polymerase [Burkholderia pseudomallei NCTC 13177] Length = 482 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 33 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 92 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 93 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 148 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 149 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 208 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 209 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 267 Query: 219 LNAIVHMYN 227 L + + Sbjct: 268 LACLKQLRK 276 >gi|167740036|ref|ZP_02412810.1| poly(A) polymerase [Burkholderia pseudomallei 14] Length = 470 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 21 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 80 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 81 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 136 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 137 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 196 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 197 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 255 Query: 219 LNAIVHMYN 227 L + + Sbjct: 256 LACLKQLRK 264 >gi|221200986|ref|ZP_03574026.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD2M] gi|221206562|ref|ZP_03579575.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD2] gi|221173871|gb|EEE06305.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD2] gi|221178836|gb|EEE11243.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia multivorans CGD2M] Length = 512 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 33/248 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD---- 101 + + + ++ +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPRRLKRDELDRRTHAVDA 180 Query: 102 -GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHR 159 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 181 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATR 240 Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 ED +R+LR RF A G I+ + + + R++ E+ KLL + + L Sbjct: 241 YREDPVRMLRVVRFAAKLG-FEIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHAL 299 Query: 220 NAIVHMYN 227 + + Sbjct: 300 ACLQRLRK 307 >gi|167847153|ref|ZP_02472661.1| poly(A) polymerase [Burkholderia pseudomallei B7210] Length = 488 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 39 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 98 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 99 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 154 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 155 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 214 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 215 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 273 Query: 219 LNAIVHMYN 227 L + + Sbjct: 274 LACLKQLRK 282 >gi|116688781|ref|YP_834404.1| poly(A) polymerase [Burkholderia cenocepacia HI2424] gi|254246247|ref|ZP_04939568.1| Poly(A) polymerase [Burkholderia cenocepacia PC184] gi|116646870|gb|ABK07511.1| poly(A) polymerase [Burkholderia cenocepacia HI2424] gi|124871023|gb|EAY62739.1| Poly(A) polymerase [Burkholderia cenocepacia PC184] Length = 518 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 35/250 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS------------------------DLITD-- 101 + + + + +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAV 180 Query: 102 ---GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAH 157 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 181 DASGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPA 240 Query: 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 R ED +R+LR RF A G I+ + + + R++ E+ KLL + + Sbjct: 241 TRFREDPVRMLRVVRFAAKLG-FEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGH 299 Query: 218 PLNAIVHMYN 227 L + + Sbjct: 300 ALACLQRLRK 309 >gi|317049596|ref|YP_004117244.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pantoea sp. At-9b] gi|316951213|gb|ADU70688.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pantoea sp. At-9b] Length = 410 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 82/362 (22%), Positives = 149/362 (41%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+ L V+D D + PD ++ + + P + + + Sbjct: 2 KTFLVGGAVRDALLRLPVKDKDWVVVGTTPDAMLAQGFQQVGRDFPVFLHPQSRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y V F D + D RRD TINA+ G +ID GG Sbjct: 57 ---EYALARTERKTGNGYTGFVTWFAPDVTLEQDLQRRDLTINAIAQADNGALIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NRT++ + A ED LR+LR RF A + N ++ L+ + A L Sbjct: 114 RDLANRTLRHVSSA---FNEDPLRVLRVARFAARFAHLNFRIAEETQALMRDMTASGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L NP + + G + +F ++ + I A + Sbjct: 171 HLTPERVWKETEKALLTHNPQVYFQVLRDCGALQVLFPELDNLF------GIPAPVKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L++A S ++R+ + + K ++ PE + Sbjct: 225 EIDTGIHSLM---------TLTLAAALSDELDVRFATLF----HDAGKAVTPPEKWPSHH 271 Query: 319 LYG------DKVMIAKLKIFLALH------------YNNLTHQDTCFILQVLSDIIHWKK 360 +G + +L++ A+ + + Q ++ + + W++ Sbjct: 272 GHGVAGVPIVAALCERLRVPNAIRDLALIVAEFHDMVHTIERQSAQALIALFDRVDAWRR 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|261364998|ref|ZP_05977881.1| multifunctional CCA protein [Neisseria mucosa ATCC 25996] gi|288566583|gb|EFC88143.1| multifunctional CCA protein [Neisseria mucosa ATCC 25996] Length = 418 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 77/300 (25%), Positives = 120/300 (40%), Gaps = 36/300 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 9 KTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPDTHE----- 63 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D +ID GG Sbjct: 64 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMARDSDNLIIDPFGGQ 120 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + L+ + L Sbjct: 121 QDLVAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETIKLMRQMVENGEADALV 177 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V D L V + + +ID Sbjct: 178 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEV-----DALFGVPQRAD-YHPEID 231 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ + SLP L + K + P+I + + Sbjct: 232 SGIHTLMTLQRTADMG-------LSLPERYAALL------HDLGKAKTPPDILPKHHGHD 278 >gi|228900216|ref|ZP_04064447.1| CCA-adding enzyme [Bacillus thuringiensis IBL 4222] gi|228859385|gb|EEN03814.1| CCA-adding enzyme [Bacillus thuringiensis IBL 4222] Length = 346 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 148/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMIRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +I++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSIETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L+ FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLTATRYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + + + + Sbjct: 232 VLLAIRTRKERGWDTV--LLYKTGIHIAEMAERVYEA-MIESYDPTSVKRVQSMFHVLPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 289 QERQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNIVNEKERIREWLQ 341 >gi|254787093|ref|YP_003074522.1| multifunctional CCA protein [Teredinibacter turnerae T7901] gi|259585854|sp|C5BPQ5|CCA_TERTT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|237687060|gb|ACR14324.1| multifunctional CCA protein [Teredinibacter turnerae T7901] Length = 411 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 84/419 (20%), Positives = 148/419 (35%), Gaps = 71/419 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ + D + P +++ K K P + T + Sbjct: 2 KIYLVGGAVRDQLLGYPHHEQDWVVVGATPQQMLDAGFKPVGKDFPVFLHPETQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R + T Y F D + D LRRD TINA+ D++G +ID G Sbjct: 57 ---EYALARQERKTAPGYTGFAFHADETVTLEQDLLRRDLTINAIAMDEEGTIIDPYNGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ RT++ + A ED +RILR RF A Y ++ L+ + + Sbjct: 114 RDIETRTLRHVSQA---FCEDPVRILRIARFAARYHHLGFRIAPETLALMRDMVQAGEVD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L +ER+W E+++ LE ++P I + G + ++ + + Q + Sbjct: 171 HLVAERVWKELSRALEEQHPAIFIQTLRECGALHRLMPELNALFGIPQPEAHHPEVDTGV 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ E+ E +RF LI K + + + S Sbjct: 231 HALLALERACELSSTPEVRFAALIHDLGKGVTPKHLWPSHHGHEQDGVALVEQLCNRLST 290 Query: 288 PREIRYFLISF------------FNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 P + R ++ N KTL + + + + + Sbjct: 291 PNQFRELAVAVCAYHTHCHRAFELNAKTLLKTLLALDGLRRPERFQQFCLCCQADAQGRT 350 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 N + + LQ L +I +F G G ++G + + + I Sbjct: 351 GLENRPYPQAAYFLQALEEIQKVDAKMFVAQG--------KKGAEIGEAMYSARLQKIK 401 >gi|121634934|ref|YP_975179.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria meningitidis FAM18] gi|166233867|sp|A1KU50|CCA_NEIMF RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|120866640|emb|CAM10391.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis FAM18] Length = 417 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 141/347 (40%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + T R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYTLARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKF-SLPREIRYF-----LISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ +++ +L ++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|319941727|ref|ZP_08016049.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B] gi|319804660|gb|EFW01527.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B] Length = 484 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 81/409 (19%), Positives = 158/409 (38%), Gaps = 42/409 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L + ++ IVGGAVRD L+ ++ +D D+AT P+ V + + + I Sbjct: 44 AKRCCEALQRRGYRAYIVGGAVRDLLLGVAPKDFDVATDATPEEVK----RAQKRAIIIG 99 Query: 75 ISYGTIKIICRKKYFDITTLRS------DLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + +I ++ + +T R+ + GR + D+ RRDFTINALY Sbjct: 100 RRFRLVHVIFGQEIIECSTFRALEGAGVRKDSSGRVISDNVFGEMWEDAARRDFTINALY 159 Query: 129 ADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D ++ DY G DL + ++ IG+ R ED +R++R R A G I+ Sbjct: 160 YDPATEEIYDYHHGFEDLGKKRLRMIGNPEERYREDPVRMIRAVRISAKLG-FAIEPATE 218 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 + K L + S R+ E KLL + + + + G+ + + +L++L Sbjct: 219 RPIARMAKLLSNVPSARLVDEALKLLTCGHAVECVSRLRKEGLAEAVLP-----TLNRLL 273 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKT 307 + E +++ + L++ K+ S L + Q Sbjct: 274 ATPDGEAFL------------MLALRRTDERLAIGKRISPFFLFATLLWPQVRLRW-QHN 320 Query: 308 LSIPEIKKLFYLYGDKV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + + +L L+ V ++ LA+ + ++LQ + K P + Sbjct: 321 EEVRGLPRLAALHDAAVEVLETESHSLAIQRRFQSDMHDLWVLQARLERRTGKSPYSVIN 380 Query: 367 ------GDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 G D + ++G + W + Q ++ +++ Sbjct: 381 HPRYRAGYDFLLLR----AQMGEVPEALPAWW-DHFVQADSDERAEMVK 424 >gi|229178043|ref|ZP_04305415.1| CCA-adding enzyme [Bacillus cereus 172560W] gi|228605531|gb|EEK62980.1| CCA-adding enzyme [Bacillus cereus 172560W] Length = 346 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 147/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLEMKTKQAIETHGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A+ + L + I Sbjct: 232 VLLAIRTRKEKDWDTV--LLYKTGIHIAEMAERVYEAMIESYDPTSVERVQLMFHALPIQ 289 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 290 -ERQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341 >gi|298368818|ref|ZP_06980136.1| multifunctional CCA protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282821|gb|EFI24308.1| multifunctional CCA protein [Neisseria sp. oral taxon 014 str. F0314] Length = 416 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 132/345 (38%), Gaps = 44/345 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 KTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPDTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D G +ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDG-LIDPFGGQ 112 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + + + L+ + L Sbjct: 113 QDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMRLMRQMVENGEADALV 169 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L KNP I + G K + +V D L V + + +ID Sbjct: 170 AERVWQELAKGLMEKNPRRMIEVLRECGALKVLLPEV-----DALFGVPQRAD-YHPEID 223 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ L A L RY + + K + P+I + + Sbjct: 224 SGIHTLM---------TLQRAADMGLSLPERYAAL----LHDLGKAKTPPDILPKHHGHD 270 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 L + N + ++ + W + Sbjct: 271 -------LAGVEPVREVNQKLRAPRHCAELAELVCRWHIMFHQVG 308 >gi|254361074|ref|ZP_04977219.1| tRNA adenylyltransferase [Mannheimia haemolytica PHL213] gi|153092560|gb|EDN73615.1| tRNA adenylyltransferase [Mannheimia haemolytica PHL213] Length = 416 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 142/359 (39%), Gaps = 53/359 (14%) Query: 30 CIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L V+D D ++++ + P + T + Sbjct: 4 YLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGADFPVFLHPETKE------- 56 Query: 89 FDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R + Y + + D +RRD TINA+ D+ + D GG+ D Sbjct: 57 -EYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDENSTLFDPYGGVQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L NR ++ + A ED LR+LR RF A + ++ L+ + LK L Sbjct: 116 LENRLLRHVSPA---FSEDPLRVLRVARFAARFHSFGFTIAPETLKLMREMVQSGELKHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER+W E K E NP + G K +F + LD+L V + Q +I Sbjct: 173 TAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPE-----LDRLFGVPQPPQ-HHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 DS ++ +L AK+ + E L+ C+ K L+ +I Y + Sbjct: 227 DSGKHTLM---------VLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYGH 277 Query: 321 GD------KVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKKP 361 + + +LKI + H + + ++++ + + W+KP Sbjct: 278 EVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWRKP 336 >gi|118581706|ref|YP_902956.1| polynucleotide adenylyltransferase protein [Pelobacter propionicus DSM 2379] gi|118504416|gb|ABL00899.1| Polynucleotide adenylyltransferase region [Pelobacter propionicus DSM 2379] Length = 881 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 83/423 (19%), Positives = 167/423 (39%), Gaps = 30/423 (7%) Query: 16 INILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I +L L + D+ VGG VRD L+ + D+D+ F++ + + Sbjct: 465 IRLLRDLGRTGDELGLPVYAVGGFVRDLLLGVENLDLDLTVEGDGIFFAERFARAKGGRV 524 Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA- 129 + ++GT ++ D+ + R + V + D RRDFTIN L Sbjct: 525 RSHPAFGTAVVVLSDGSKLDVASTRLEYYESPGVLPTVERSSLRHDLYRRDFTINTLAIC 584 Query: 130 ---DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSD 185 D+ G V D+ GG D++ RT++ + + +ED R+ R RF + ++ Sbjct: 585 INSDRFGMVTDFFGGQQDIQQRTVRVLHN--LSFVEDPTRVFRAIRFEQRLAFRIAPHTE 642 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ 245 L+ S K L + R+++E+ +L + PL A+ M G+ I ++ +S + Sbjct: 643 NLIRSALRMKVLDRVGGIRLFNELVLILNEQEPLGAVRRMAMLGLLPFIHPQLR-LSPET 701 Query: 246 LSQVIEAEQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + E+ ++ W + F+ L ++ S+P + Sbjct: 702 ERAMTESSRLLTWFRLLYLNDPCQQWQVYFLALCERLRDDEFQEACRRLSMPGRFVSQVF 761 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIA----KLKIFLALHYNNLTHQDTCFILQVL 352 + + +K+ L ++ + L+I L L Q + + Sbjct: 762 AHRHRALVMLETLQRRLKRAQDLRNSEIYDSFHGLPLEILLYLAARTKNDQVRRLVSLYI 821 Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + + H ++ L G+ + + G+ PG I+ +++ ++E+ L R+LI Sbjct: 822 TRLRHMRRE---LDGNALKELGLAPGPNYSRIMKRLLDARLDAEVGTAEEE-RTLARELI 877 Query: 413 ASS 415 A + Sbjct: 878 ADA 880 >gi|53725780|ref|YP_103879.1| polyA polymerase [Burkholderia mallei ATCC 23344] gi|67642145|ref|ZP_00440906.1| polyA polymerase [Burkholderia mallei GB8 horse 4] gi|121598893|ref|YP_991856.1| polyA polymerase [Burkholderia mallei SAVP1] gi|124383907|ref|YP_001027077.1| polyA polymerase [Burkholderia mallei NCTC 10229] gi|126449512|ref|YP_001081728.1| poly(A) polymerase [Burkholderia mallei NCTC 10247] gi|166998831|ref|ZP_02264683.1| poly(A) polymerase [Burkholderia mallei PRL-20] gi|254178813|ref|ZP_04885467.1| poly(A) polymerase [Burkholderia mallei ATCC 10399] gi|254202588|ref|ZP_04908951.1| poly(A) polymerase [Burkholderia mallei FMH] gi|254207926|ref|ZP_04914276.1| poly(A) polymerase [Burkholderia mallei JHU] gi|254355932|ref|ZP_04972210.1| poly(A) polymerase [Burkholderia mallei 2002721280] gi|52429203|gb|AAU49796.1| polyA polymerase [Burkholderia mallei ATCC 23344] gi|121227703|gb|ABM50221.1| polyA polymerase [Burkholderia mallei SAVP1] gi|124291927|gb|ABN01196.1| polyA polymerase [Burkholderia mallei NCTC 10229] gi|126242382|gb|ABO05475.1| poly(A) polymerase [Burkholderia mallei NCTC 10247] gi|147746835|gb|EDK53912.1| poly(A) polymerase [Burkholderia mallei FMH] gi|147751820|gb|EDK58887.1| poly(A) polymerase [Burkholderia mallei JHU] gi|148024907|gb|EDK83085.1| poly(A) polymerase [Burkholderia mallei 2002721280] gi|160694727|gb|EDP84735.1| poly(A) polymerase [Burkholderia mallei ATCC 10399] gi|238523237|gb|EEP86677.1| polyA polymerase [Burkholderia mallei GB8 horse 4] gi|243064916|gb|EES47102.1| poly(A) polymerase [Burkholderia mallei PRL-20] Length = 515 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 66 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 125 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 126 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 181 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 182 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 241 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 242 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 300 Query: 219 LNAIVHMYN 227 L + + Sbjct: 301 LACLKQLRK 309 >gi|183220775|ref|YP_001838771.1| Poly(A) polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779197|gb|ABZ97495.1| Poly(A) polymerase (PAP; Plasmid copy number protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 497 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 147/361 (40%), Gaps = 45/361 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D I I++ LNK K+ +VGG VRD LM +D DI T+ P+++ R+F+ R Sbjct: 46 DEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRVFNNCRI--- 102 Query: 72 PTSISYGTIKIICRKKYFDITTLRS---------DLITDGRYAKVVFTRDWKADSLRRDF 122 + + II + K +++T RS D + K D+ RRDF Sbjct: 103 -IGKRFKIVHIIFKGKIIEVSTFRSLPEHRLEKHKAENDYLIKRDNSFGTAKEDAARRDF 161 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+L+ D ++DYVGG D++ + ++ IGD ED +R+LR +F G + Sbjct: 162 TINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVKFSVLLG-LD 220 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF------ 235 I+ +A K + L+ S+ R+ E NK+ + + ++ Sbjct: 221 IEKKTKLAIKKNRLELEKSSTARLLEEYNKMFRTWKTSIIFEGLAENHLLDVLYKEPTDK 280 Query: 236 -----LDVQEISLD-----QLSQVIEAEQVFEWKIDSLLRFIVL--------------IS 271 + +E +D +L+ + E ++ ++ ++ Sbjct: 281 LKKTDPEWREHFMDTPLGKRLAVTDKLLSAREEMTPAIFYSLIFYDIVKDLYENDRGHLA 340 Query: 272 WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 K+S+ + ++ +P+ + L+ F + + ++ + + Sbjct: 341 HNIKESLQPVFERMGIPKREQDNLVKIFISQPRFQVTDDEKERQNTFFKKKDYFYDAFMV 400 Query: 332 F 332 + Sbjct: 401 Y 401 >gi|78222788|ref|YP_384535.1| PolyA polymerase family protein [Geobacter metallireducens GS-15] gi|78194043|gb|ABB31810.1| PolyA polymerase family protein [Geobacter metallireducens GS-15] Length = 880 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 154/402 (38%), Gaps = 32/402 (7%) Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC-RKKYFDI 91 GG RD L+ DIDI F+ T + + +GT I+ D+ Sbjct: 486 GGFARDLLLGGKNDDIDITVEGDGILFAETFAATHECRVKSHAKFGTAVIVLPDGFKIDV 545 Query: 92 TTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDYVGGLNDLRN 147 + R + V K D RRDFTIN L G +IDY G DLR+ Sbjct: 546 ASTRLEFYETPGALPTVERSSLKMDLYRRDFTINTLAIQLNPANFGLLIDYFGAYRDLRD 605 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGLVASIKAKKGLKILSSERIW 206 + I+ + + +ED R+ R RF G + +D L+ + L L R+ Sbjct: 606 KVIRVLHN--LSFVEDPTRVFRAVRFEQRLGFQIARHTDNLIRNAVKMGFLDKLGGRRLL 663 Query: 207 SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW-------- 258 +E+ +L + P+ AI+ M + G+ I D+ + + L + E ++V W Sbjct: 664 NELVIILREREPVRAILRMESLGLLGFIHPDLT-LETENLRVLDEVKKVVTWFELLYQRD 722 Query: 259 KIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLI-------SFFNCNFNQKTLSI 310 ++++ + F+ L S + M + S+ R LI + Sbjct: 723 QVETWVVYFLALTSLLADAAFFEMCTRLSVSEHYREKLIDMRVHGEQMLAVMERKVAGKK 782 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 P ++ Y + + L +A + + + L ++ LTGDD+ Sbjct: 783 PVLRSNIYFWLRGLSPEVLLYIMAKTCRDEVRKFVSLYVTQLREVTCM------LTGDDL 836 Query: 371 VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 G+PPG + IL +N +E+ +++++ Sbjct: 837 KAIGLPPGPRYREILDAVLSARLNGEVSTREEE-SRFVKQML 877 >gi|193212873|ref|YP_001998826.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobaculum parvum NCIB 8327] gi|193086350|gb|ACF11626.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Chlorobaculum parvum NCIB 8327] Length = 475 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 162/471 (34%), Gaps = 66/471 (14%) Query: 11 HDSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILP-DRVMRIFSK 65 D+ IL + D++ +VGG VRD +M DIDI P I + Sbjct: 5 KHDDIPEILYRIGDLADQAGLPCYLVGGYVRDLIMQRPCTDIDIMVIGEPVPFAKAIAEQ 64 Query: 66 TRYKVIPTSISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 + + T +I +I R + + + D RR Sbjct: 65 LGGRNFVLFERFRTAQIELDDPEAGTFKLEIVGARKESYNPESRKPITSIGTLEDDLSRR 124 Query: 121 DFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 DFTINAL G+++D G +R + +K D +D LR++R RF Sbjct: 125 DFTINALALRLNREQRGELVDLYDGQRHIREKLLKTPLDPEQTFSDDPLRMMRAARFACQ 184 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + +D L A ++I+S ER+ E K++ A P + +++ G+ KEI Sbjct: 185 L-DFRLDEATLEAMEAMSSRIQIVSRERVSHEFLKIMAAPKPSIGLKILHSTGLLKEIIP 243 Query: 237 DVQEI-SLDQLSQVIEAEQVFE----------WKIDSLLRFIVLISWQDK---------- 275 ++ + ++Q+ + + +F LR L K Sbjct: 244 ELDVMAGIEQVDGLGHKDTLFHTFQVVDNLAEHSDKLWLRVSALFHDIAKPVTKRFHLGS 303 Query: 276 ------------KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 K + + + P E ++ + LS EI Sbjct: 304 GWTFHGHEAVGVKLVRRIFRAMKWPMEPMEYVQKMVRLHHRPIPLSKDEITDSAVRRLMF 363 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLS-------------DIIHWKKPLFPLTGDDV 370 L + L ++T ++ + +++ + K P++G D+ Sbjct: 364 DAGQDLDDLMTLCRADVTSKNPRKVQRIMKNFNNVEAKIAEVGEKDLLAKWRPPVSGTDI 423 Query: 371 VKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL----RKLIASSQ 416 ++ +P GK VG I + I+ ++ + R+++ + Sbjct: 424 MEMLNLPQGKLVGIIKSRMENAIIDGDIPYDRQAALDFVSAVYREMVEKRE 474 >gi|114332256|ref|YP_748478.1| poly(A) polymerase [Nitrosomonas eutropha C91] gi|114309270|gb|ABI60513.1| poly(A) polymerase [Nitrosomonas eutropha C91] Length = 462 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 27/291 (9%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + + L + + IVGGAVRD L+ L +D DI T P+ V IF +R Sbjct: 44 LKVALTLQQAGYSAYIVGGAVRDLLLGLKPKDYDIVTDATPEEVRAIFRHSRI----IGR 99 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRRD 121 + + ++ + + +++T R D GR F + D RRD Sbjct: 100 RFRLVHVMSKGETVEVSTFRGKAADDLIQSDKECAYIDATGRLLHDNFFGSQEEDVRRRD 159 Query: 122 FTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINAL+ + ++IDY+ G D+ + + IGD R ED +R+LR R A G Sbjct: 160 FTINALFYNPATEEIIDYLSGFEDVMAKRLNIIGDPEQRYREDPVRMLRAVRLAAKLG-I 218 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 ID L + + R++ E+ KLL + + L A++ + G+ + + Sbjct: 219 QIDDRTAAPIGDLAPLLLNVPAARLFDEMLKLLFSGHALTAVIDLRTRGLHHGLLPMLDV 278 Query: 241 ISLDQLSQVI-------EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 I L + E+V + K S + W + ++ ++ K Sbjct: 279 ILEQPLGERFISLALKNTDERVRQGKPVSPGFLFAALLWHEVLAVWNIHLK 329 >gi|328471957|gb|EGF42834.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio parahaemolyticus 10329] Length = 406 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 76/358 (21%), Positives = 134/358 (37%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 2 QVYLVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ D G++ D GG Sbjct: 54 NKEEHALARTERKSGSGYTGFDCFFDPSVTLEEDLIRRDLTINAMAMDDSGQLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ + DA +ED LR+LR RF A ++ L+ I L Sbjct: 114 ADLNNRILRHVSDA---FVEDPLRVLRVARFAAKLASLGFTVAKETMQLMRDIADSGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + + G + +++ L V + E+ + Sbjct: 171 TLTPERVWQEWHKSLSTPRPDVFLSVLRDCGALAVVLPEIEA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A K S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAEQAAKLSTSLPVRFAAQVHDLGKGVTPESEWPSHKMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 KL ++V + LAL + I+++L+ W+K Sbjct: 276 TGLKLIKKLCERVRVPNEFKELALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKSE 333 >gi|148979383|ref|ZP_01815489.1| tRNA nucleotidyltransferase [Vibrionales bacterium SWAT-3] gi|145961819|gb|EDK27112.1| tRNA nucleotidyltransferase [Vibrionales bacterium SWAT-3] Length = 438 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 81/414 (19%), Positives = 146/414 (35%), Gaps = 73/414 (17%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + + +VGGAVRD L+N+ D D + P + + K P + T + Sbjct: 25 KENGLQRYLVGGAVRDKLLNIDSYDKDWVVVGSTPQEMESLGFTAVGKDFPVFLHPKTKE 84 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVID 137 + R++ + Y F D + D +RRD TINA+ D G + D Sbjct: 85 --------EHALARTERKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQDDAGNLHD 136 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKA 193 G DL +R ++ + DA +ED LR+LR RF A ++ ++A+I Sbjct: 137 PYHGQQDLSDRILRHVSDA---FVEDPLRVLRVARFTAKLHHLGFTVAPETMAMMATIVE 193 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L L++ER+W E +K L +P + + G + ++ D L V + E Sbjct: 194 SGELAHLTAERVWQEWHKSLSTPHPEVFLSVLRECGALAVVLPEI-----DALFGVPQPE 248 Query: 254 QVFEWKIDSL------------------LRFIVLISWQDK-------------------K 276 + + +ID+ +RF + K K Sbjct: 249 K-WHPEIDTGIHTLMVAQQAALLSPSLPVRFAAQVHDLGKGVTPQSEWPSHKMHCHTGVK 307 Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFN-------QKTLSIPEIKKLFYLYGDKVMIAKL 329 I + ++ +P E R + + N + T + + K + L Sbjct: 308 IIKKLCERVRVPNEFRDLALLVCEQHSNIHRAGELKPTTFLKVLNKFDVWRKPDRLNDIL 367 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 A H +D + + + + + ++ G GK + Sbjct: 368 LCCQADHAGRKGLEDQPYPQKARFEAAYQAALQVEV--KVIIADGFK-GKDIRE 418 >gi|194246633|ref|YP_002004272.1| CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) [Candidatus Phytoplasma mali] gi|193806990|emb|CAP18425.1| CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) [Candidatus Phytoplasma mali] Length = 387 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 110/404 (27%), Positives = 187/404 (46%), Gaps = 29/404 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +IL +L + ++ IVGGAVRD +NL DIDI T L +M+IF K+ + Sbjct: 9 ANDILKILQQNGFEAFIVGGAVRDYYLNLPFVDIDIITNALTLDLMKIF-----KINSNN 63 Query: 75 ISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 I +G+ + + FDITT R + + R+ K++FT D K D LRRDFTIN+L D + Sbjct: 64 IKHGSCNVCFKNSQFDITTYRIEEKYKNHRHPTKIIFTNDVKKDLLRRDFTINSLLMDDK 123 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +IDY+GGL+D++N IK I D + ED +RILR F A I+ + A K Sbjct: 124 KNIIDYLGGLSDIKNSIIKTIKDPEEKFQEDSVRILRTCYFQAKLC-FEIEINTKKALKK 182 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK +S +RI E K++ K+ +++ + I + L Q Sbjct: 183 QSYLLKKISKDRILQEFIKIISQKHFYKSLITIKETNIIDFL------KGLSQGINFCIE 236 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPE 312 ++ + D ++++ M F+ ++ + L FN+K L + Sbjct: 237 NKLKKINKDIFFSLSLILN-------KKMFNYFNFSKKDQK-LYQTVEFLFNKKKL---D 285 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK 372 IK + YG ++ + KI +T I + ++I K ++ +++K Sbjct: 286 IKWSLFKYGLEICLLTNKINYLFKKEK---NETQKIKIIYKNLIIKKNSDLKISSIEILK 342 Query: 373 -YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 I PG + N+ + ++ S+++L + +RK+ S Sbjct: 343 IMQISPGLWLNNLKQQIIKLVLDEKIINSKKNLLNYVRKIKKRS 386 >gi|325144615|gb|EGC66914.1| multifunctional CCA protein [Neisseria meningitidis M01-240013] Length = 417 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 138/347 (39%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + T R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYTLARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIR------YFLISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ ++++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|294341121|emb|CAZ89522.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase] [Thiomonas sp. 3As] Length = 443 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 24/251 (9%) Query: 27 DKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 +S +VGGAVRD+L+ D D +A P +++ + P + T + Sbjct: 31 GRSYVVGGAVRDALLGRPHGDRDWVAVGATPQQMIDAGFLPVGRDFPVFLHPQTHE---- 86 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGG 141 + R++ T Y V + D LRRD TINA+ G +ID GG Sbjct: 87 ----EYALARTERKTAPGYRGFVVQAAPEVTLEEDLLRRDLTINAMARAADGTLIDPYGG 142 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKI 199 DL+ R ++ + A ED +RILR RF A +G+ ++ + L+ + + Sbjct: 143 QRDLQARVLRHVSAA---FAEDPVRILRLARFAARFGDFSVAPETMDLMRHMVHAGEVDA 199 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L ER+W E+ + L P + + G + +V D+L V + + + Sbjct: 200 LVPERVWQELARGLMEPQPQRLFAVLRDCGALARLLPEV-----DRLWGVPQRAD-YHPE 253 Query: 260 IDSLLRFIVLI 270 ID+ + ++++ Sbjct: 254 IDTGVHVMLVL 264 >gi|255065916|ref|ZP_05317771.1| multifunctional CCA protein [Neisseria sicca ATCC 29256] gi|255049827|gb|EET45291.1| multifunctional CCA protein [Neisseria sicca ATCC 29256] Length = 418 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 82/379 (21%), Positives = 135/379 (35%), Gaps = 60/379 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 9 KTYLVGGAVRDYLLGLPVKDHDWVVVGANAQTMLAQGFQPVGKDFPVFLHPETHE----- 63 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D +ID GG Sbjct: 64 ---EYALARTERKTAKGYAGFSFHADKDVTLEQDLMRRDLTINAMAQDSDDLIIDPFGGQ 120 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + ++ L+ + + L Sbjct: 121 QDLAAGILRHVSPA---FAEDPVRILRTARFAARYGFEIAEETMRLMRQMVENGEVDALV 177 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------SLDQLSQVIEAE 253 +ER+W E+ K L KN I + G K + +V + ++ I Sbjct: 178 AERVWQELAKGLMEKNSRRMIEVLRECGALKVLLPEVDALFGVPQRADYHPEIDSGIHTL 237 Query: 254 QVFEWKIDSLL----RFIVLISWQDK-------------------KSILSMAKKFSLPRE 290 + D L R+ L+ K + + + ++ PR Sbjct: 238 MTLQRAADMGLSLPERYAALLHDLGKAKTPPDILPKHHGHDLAGVEPVREVNQRLRAPRH 297 Query: 291 IRYFL-------ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLA-----LHYN 338 I F + + +KK + A L + +A L+ Sbjct: 298 CAELAELVCRWHIMFHQVGQFKNKTILTVLKKTDAFRRPERFAAALNVCIADKQGRLNRE 357 Query: 339 NLTHQDTCFILQVLSDIIH 357 N + L +L Sbjct: 358 NAPYPQRAHWLALLEAANQ 376 >gi|189910875|ref|YP_001962430.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775551|gb|ABZ93852.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 492 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 147/361 (40%), Gaps = 45/361 (12%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D I I++ LNK K+ +VGG VRD LM +D DI T+ P+++ R+F+ R Sbjct: 41 DEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRVFNNCRI--- 97 Query: 72 PTSISYGTIKIICRKKYFDITTLRS---------DLITDGRYAKVVFTRDWKADSLRRDF 122 + + II + K +++T RS D + K D+ RRDF Sbjct: 98 -IGKRFKIVHIIFKGKIIEVSTFRSLPEHRLEKHKAENDYLIKRDNSFGTAKEDAARRDF 156 Query: 123 TINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN 181 TIN+L+ D ++DYVGG D++ + ++ IGD ED +R+LR +F G + Sbjct: 157 TINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVKFSVLLG-LD 215 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF------ 235 I+ +A K + L+ S+ R+ E NK+ + + ++ Sbjct: 216 IEKKTKLAIKKNRLELEKSSTARLLEEYNKMFRTWKTSIIFEGLAENHLLDVLYKEPTDK 275 Query: 236 -----LDVQEISLD-----QLSQVIEAEQVFEWKIDSLLRFIVL--------------IS 271 + +E +D +L+ + E ++ ++ ++ Sbjct: 276 LKKTDPEWREHFMDTPLGKRLAVTDKLLSAREEMTPAIFYSLIFYDIVKDLYENDRGHLA 335 Query: 272 WQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 K+S+ + ++ +P+ + L+ F + + ++ + + Sbjct: 336 HNIKESLQPVFERMGIPKREQDNLVKIFISQPRFQVTDDEKERQNTFFKKKDYFYDAFMV 395 Query: 332 F 332 + Sbjct: 396 Y 396 >gi|149189053|ref|ZP_01867341.1| tRNA nucleotidyltransferase [Vibrio shilonii AK1] gi|148837016|gb|EDL53965.1| tRNA nucleotidyltransferase [Vibrio shilonii AK1] Length = 408 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 81/411 (19%), Positives = 151/411 (36%), Gaps = 69/411 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P++++ + K P + K Sbjct: 2 QVYLVGGAVRDQLLKLEVYDKDWVVVGATPEQMLADGFQAVGKEFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y + D +RRD TINA+ D G++ID G Sbjct: 54 SKQEHALARTERKAGKGYTGFECFSSPDVTLEQDLMRRDLTINAMAQDDSGRIIDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+++ ++ + A +ED LR+LR RF A ++ L+ SI L+ Sbjct: 114 QDLKDKVLRHVSPA---FVEDPLRVLRVARFAAKLRHLGFTVAPETMDLMKSIVNDGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E +K L ++P + + + G + + LD L V + E+ + Sbjct: 171 HLTAERVWQEWHKSLTTRHPEVFLDVLRSCGALAVVLPE-----LDALFGVPQPEK-WHP 224 Query: 259 KID------------------SLLRFIV-------------------LISWQDKKSILSM 281 +ID ++RF L + +K+I S+ Sbjct: 225 EIDTGIHTLMVAQQAALLSTSPIVRFAAQVHDLGKALTPAEEWPSHKLHTHTGQKAIKSL 284 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNNL 340 + +P E R ++ + N + ++G V K+ L Sbjct: 285 CSRVRVPNEYRDLAVAVCAQHSNVHRAAELRPATFIKIFGQLDVWRKPEKLQQVLMCCEA 344 Query: 341 THQDTCFIL----QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 H+ + + + + +++ G G+ + L Sbjct: 345 DHKGRKGLESNPYPQAERFMQAYQAAISVEVQNIIADGFK-GQAIKEELDK 394 >gi|53720430|ref|YP_109416.1| putative polynucleotide adenylyltransferase [Burkholderia pseudomallei K96243] gi|76810345|ref|YP_334685.1| polyA polymerase [Burkholderia pseudomallei 1710b] gi|126442154|ref|YP_001060282.1| poly(A) polymerase [Burkholderia pseudomallei 668] gi|126452950|ref|YP_001067541.1| poly(A) polymerase [Burkholderia pseudomallei 1106a] gi|217420727|ref|ZP_03452232.1| poly(A) polymerase [Burkholderia pseudomallei 576] gi|226194299|ref|ZP_03789898.1| poly(A) polymerase [Burkholderia pseudomallei Pakistan 9] gi|237813672|ref|YP_002898123.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia pseudomallei MSHR346] gi|242316927|ref|ZP_04815943.1| poly(A) polymerase [Burkholderia pseudomallei 1106b] gi|254180767|ref|ZP_04887365.1| poly(A) polymerase [Burkholderia pseudomallei 1655] gi|254191602|ref|ZP_04898105.1| poly(A) polymerase [Burkholderia pseudomallei Pasteur 52237] gi|254194852|ref|ZP_04901282.1| poly(A) polymerase [Burkholderia pseudomallei S13] gi|254258221|ref|ZP_04949275.1| poly(A) polymerase [Burkholderia pseudomallei 1710a] gi|254299144|ref|ZP_04966594.1| poly(A) polymerase [Burkholderia pseudomallei 406e] gi|52210844|emb|CAH36831.1| putative polynucleotide adenylyltransferase [Burkholderia pseudomallei K96243] gi|76579798|gb|ABA49273.1| polyA polymerase [Burkholderia pseudomallei 1710b] gi|126221647|gb|ABN85153.1| poly(A) polymerase [Burkholderia pseudomallei 668] gi|126226592|gb|ABN90132.1| poly(A) polymerase [Burkholderia pseudomallei 1106a] gi|157809255|gb|EDO86425.1| poly(A) polymerase [Burkholderia pseudomallei 406e] gi|157939273|gb|EDO94943.1| poly(A) polymerase [Burkholderia pseudomallei Pasteur 52237] gi|169651601|gb|EDS84294.1| poly(A) polymerase [Burkholderia pseudomallei S13] gi|184211306|gb|EDU08349.1| poly(A) polymerase [Burkholderia pseudomallei 1655] gi|217396139|gb|EEC36156.1| poly(A) polymerase [Burkholderia pseudomallei 576] gi|225933764|gb|EEH29752.1| poly(A) polymerase [Burkholderia pseudomallei Pakistan 9] gi|237503094|gb|ACQ95412.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Burkholderia pseudomallei MSHR346] gi|242140166|gb|EES26568.1| poly(A) polymerase [Burkholderia pseudomallei 1106b] gi|254216910|gb|EET06294.1| poly(A) polymerase [Burkholderia pseudomallei 1710a] Length = 515 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 66 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 125 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 126 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 181 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 182 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 241 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 242 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 300 Query: 219 LNAIVHMYN 227 L + + Sbjct: 301 LACLKQLRK 309 >gi|325524972|gb|EGD02896.1| poly(A) polymerase [Burkholderia sp. TJI49] Length = 511 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 33/246 (13%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 66 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 124 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD-----G 102 + + + ++ +++T R+ D T G Sbjct: 125 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 181 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 182 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYR 241 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A G I+ + + + R++ E+ KLL + + L Sbjct: 242 EDPVRMLRVVRFAAKLG-FEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHALAC 300 Query: 222 IVHMYN 227 + + Sbjct: 301 LQRLRK 306 >gi|254670092|emb|CBA05004.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha153] gi|316985100|gb|EFV64053.1| poly A polymerase head domain protein [Neisseria meningitidis H44/76] gi|325200128|gb|ADY95583.1| multifunctional CCA protein [Neisseria meningitidis H44/76] Length = 417 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 140/347 (40%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKF-SLPREIRYF-----LISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ +++ +L ++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|188532576|ref|YP_001906373.1| tRNA nucleotidyl transferase [Erwinia tasmaniensis Et1/99] gi|226702055|sp|B2VGJ4|CCA_ERWT9 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|188027618|emb|CAO95468.1| tRNA nucleotidyl transferase [Erwinia tasmaniensis Et1/99] Length = 407 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 74/346 (21%), Positives = 136/346 (39%), Gaps = 40/346 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+NL V+D D + P +++ + + P + + Sbjct: 2 KTYLVGGAVRDGLLNLPVKDKDWVVVGASPQQMLDRGYQQVGRDFPVFLHP--------E 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + Y + D RRD TINA+ D G D GG Sbjct: 54 SHEEYALARTERKSGRGYTGFTCYSAPDVTLEQDLARRDLTINAIAQDAGGNYCDPYGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+ R ++ + A ED LR+LR RF A + N ++ L+ ++ L Sbjct: 114 ADLQQRLLRHVSGA---FNEDPLRVLRVARFAARFAHLNFRIADETLLLMQAMTHSGELH 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E L+ +P + + G +F ++ + + A + Sbjct: 171 HLTPERVWKETELALQTPSPQVFFQVLRDCGALAVLFPELDNLY------GVPAPAKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + L+MA + S +IR+ + + K L+ + Sbjct: 225 EIDTGVH---------ALMALAMAARLSQEIDIRFATLF----HDVGKALTPKVKWPSHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +G + + L N +D ++ D++H + P Sbjct: 272 GHGPAGVPLVAALCERLRVPNAL-RDLALLVTEFHDLVHTIQCQPP 316 >gi|209696097|ref|YP_002264027.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Aliivibrio salmonicida LFI1238] gi|226702032|sp|B6EM10|CCA_ALISL RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|208010050|emb|CAQ80373.1| tRNA nucleotidyltransferase (multifunctional CCA protein) [Aliivibrio salmonicida LFI1238] Length = 407 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 82/413 (19%), Positives = 153/413 (37%), Gaps = 73/413 (17%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRDSL+N+ V+D D + P + + ++ + P + T + Sbjct: 2 QIYLVGGAVRDSLLNIDVKDKDWVVVGSTPTHMNSLGYQSVGQDFPVFLHPRTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ +G +ID G Sbjct: 57 ---EYALARTERKSGQGYKGFTCYAEADVTLEEDLLRRDLTINAIAQSDKGLLIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+NR ++ + +A +ED LR+LR RF A + ++ L+ ++ + L Sbjct: 114 EDLKNRLLRHVSNA---FVEDPLRVLRVARFAARFHYLGFTIAPETMQLMKTLVSSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L +K+P + + G + ++ D L V + EQ + Sbjct: 171 HLTPERVWQEWEKSLSSKHPNIFLSVLKECGALAVVLPEI-----DALFGVPQPEQ-WHP 224 Query: 259 KIDSL------------------LRFIVLISWQDK-------------------KSILSM 281 +ID+ +RF + K K I ++ Sbjct: 225 EIDTGMHTLMVSQQASLLSTSLPIRFAAQVHDLGKGITPESEWPSHKMHCHTGIKVIKNL 284 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM-IAKLKIFLALHYNNL 340 K+ +P E + + + N S + ++ + ++ L Sbjct: 285 CKRVRVPNEYKELALLVCEHHTNVHRASELRAQTFIKIFDKMDLWRKPERLESILLCCQA 344 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTG------DDVVKYGIPPGKKVGNILVH 387 H + L+ ++ +VV G G ++ + L Sbjct: 345 DHAGRLGLE--LNPYPQKERMESAFNAAQHVEVKEVVAAGFK-GPEIRDELTK 394 >gi|325134512|gb|EGC57157.1| multifunctional CCA protein [Neisseria meningitidis M13399] gi|325205983|gb|ADZ01436.1| multifunctional CCA protein [Neisseria meningitidis M04-240196] Length = 417 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 74/310 (23%), Positives = 118/310 (38%), Gaps = 30/310 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYAGFSFHTDKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++ + SLP L L L + Sbjct: 225 SGIHTLMTLQRAADMG-------LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEP 277 Query: 322 DKVMIAKLKI 331 + + +L+ Sbjct: 278 VREVNQRLRA 287 >gi|28897188|ref|NP_796793.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio parahaemolyticus RIMD 2210633] gi|260361613|ref|ZP_05774640.1| multifunctional CCA protein [Vibrio parahaemolyticus K5030] gi|260878093|ref|ZP_05890448.1| multifunctional CCA protein [Vibrio parahaemolyticus AN-5034] gi|260895976|ref|ZP_05904472.1| multifunctional CCA protein [Vibrio parahaemolyticus Peru-466] gi|260902508|ref|ZP_05910903.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ4037] gi|73619897|sp|Q87SK9|CCA_VIBPA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|28805397|dbj|BAC58677.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308086717|gb|EFO36412.1| multifunctional CCA protein [Vibrio parahaemolyticus Peru-466] gi|308089823|gb|EFO39518.1| multifunctional CCA protein [Vibrio parahaemolyticus AN-5034] gi|308109814|gb|EFO47354.1| multifunctional CCA protein [Vibrio parahaemolyticus AQ4037] gi|308111843|gb|EFO49383.1| multifunctional CCA protein [Vibrio parahaemolyticus K5030] Length = 406 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 76/358 (21%), Positives = 134/358 (37%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 2 QVYLVGGAVRDQLLGIDSYDNDWVVVGATPEMMLAQGYTAVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ D G++ D GG Sbjct: 54 NKEEHALARTERKSGSGYTGFDCFFDPSVTLEEDLIRRDLTINAMAMDDSGQLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ + DA +ED LR+LR RF A ++ L+ I L Sbjct: 114 ADLNNRILRHVSDA---FVEDPLRVLRVARFSAKLASLGFTVAKETMQLMRDIADSGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + + G + +++ L V + E+ + Sbjct: 171 TLTPERVWQEWHKSLSTPRPDVFLSVLRDCGALAVVLPEIEA-----LFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A K S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAEQAAKLSTSLPVRFAAQVHDLGKGVTPESEWPSHKMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 KL ++V + LAL + I+++L+ W+K Sbjct: 276 TGLKLIKKLCERVRVPNEFKELALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKSE 333 >gi|119943963|ref|YP_941643.1| fused tRNA nucleotidyl transferase and 2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Psychromonas ingrahamii 37] gi|166233873|sp|A1SRC9|CCA_PSYIN RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|119862567|gb|ABM02044.1| metal dependent phosphohydrolase [Psychromonas ingrahamii 37] Length = 409 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 79/362 (21%), Positives = 148/362 (40%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V+D D + PD+++++ + K P I T Sbjct: 2 QIFLVGGAVRDQLLQLKVKDRDYVVIAATPDKLLKLGFQQVGKDFPVFIHPQT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + D RRD TINA+ QG++ID GL Sbjct: 55 -GDEYALARTERKKGSGHNGFECYAGLDVTLTEDLKRRDLTINAIAQSPQGELIDPYHGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 D++ +T++ I A ED LR+LR RF A + + I + L+ S+ + L Sbjct: 114 QDIQTKTLRHISTA---FSEDPLRVLRVARFAARFYDLGFKIAPETLDLMRSLSSSGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E L+ NP + + G +F +++ + + A + + Sbjct: 171 HLTAERVWQETANALKTNNPQIYFQVLRDCGALPLLFPEIEALF------GVPAPKKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ ++ + K S R+ + + K L+ E+ Sbjct: 225 EIDTGIHTLM---------VVEQSVKLSDSLAFRFACL----VHDLGKALTPKELWPSHK 271 Query: 319 LYGD------KVMIAKLKI--------FLALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + +LKI L ++ L H+ + ++ ++ W+K Sbjct: 272 GHGKLGLQLINNLCERLKIPNECRELACLVSEHHTLIHKGLELEADSLITLMDQNDAWRK 331 Query: 361 PL 362 P Sbjct: 332 PE 333 >gi|127511941|ref|YP_001093138.1| metal dependent phosphohydrolase [Shewanella loihica PV-4] gi|166233878|sp|A3QBN1|CCA_SHELP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|126637236|gb|ABO22879.1| metal dependent phosphohydrolase [Shewanella loihica PV-4] Length = 413 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+N+ ++D D + ++ + K P + T + Sbjct: 2 KIYLVGGAVRDQLLNIPIKDRDYMVVGATVQEMLDKGYRQVGKDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D LRRD TINA+ D+ G+V D GG Sbjct: 57 ---EYALARTERKTGVGYGGFSVYAAPDVTLEEDLLRRDLTINAIAQDETGRVFDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEK-NIDSDGLVASIKAKKGLK 198 D+ R ++ + DA +ED LR+LR RF A + G K ++ L+ I A L+ Sbjct: 114 ADIEQRLLRHVSDA---FVEDPLRVLRVARFAARFQPLGFKVAPETMALMQRIAASGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER++ E++K L + P + G +F +++ L + + EQ + Sbjct: 171 ALTPERVFQELDKALSTEAPQVFFEVLREAGGLAILFPEIEA-----LFGIPQPEQ-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L A + S +++R+ + + K LS E + Sbjct: 225 EIDTGIHTLM---------VLEQAARLSQDKQVRFAAL----VHDLGKALSPKEHLPKHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K L + AL D + ++SD F L + +VK Sbjct: 272 GHGQKG----LPLIRALCERFRVPNDYRDLALLVSDQHQNIHNAFELRAETMVKL 322 >gi|260582187|ref|ZP_05849981.1| tRNA nucleotidyltransferase [Haemophilus influenzae NT127] gi|260094819|gb|EEW78713.1| tRNA nucleotidyltransferase [Haemophilus influenzae NT127] Length = 416 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 138/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + GK+ID GG DL Sbjct: 57 EYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGKIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMAELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALYGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|118594498|ref|ZP_01551845.1| poly(A) polymerase [Methylophilales bacterium HTCC2181] gi|118440276|gb|EAV46903.1| poly(A) polymerase [Methylophilales bacterium HTCC2181] Length = 411 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 10/233 (4%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 I I+ +L K ++ IVGGA+RD LMN + +D DIAT P+++ +F ++R Sbjct: 28 SKHAIEIIKVLKKNNYEAYIVGGAIRDILMNKNPKDFDIATDATPEQIKLLFRRSRI--- 84 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLIT----DGRYAKVVFTRDWKADSLRRDFTINAL 127 + + ++ + +++T R+ K K D+ RRDFT N++ Sbjct: 85 -IGRRFKLVHVMDGRGIIEVSTFRAKPHNKEVMRNGVTKDNEYGTLKEDAERRDFTCNSI 143 Query: 128 YADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 Y + K +ID GG+ D+R + + IGD R ED +RILR RF A ID + Sbjct: 144 YYNPLTKVLIDLYGGVKDIRAKKLAMIGDPKKRFDEDSVRILRAIRFSAKLN-LTIDKNI 202 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 L A K L+ + R++ EI KL + L + + K F + Sbjct: 203 LEAIESKKSQLQSIPYSRLFDEIMKLFLTGHALQSFDLFKRFNLSKYYFPSFE 255 >gi|332140340|ref|YP_004426078.1| tRNA nucleotidyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|226702033|sp|B4RVV4|CCA_ALTMD RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|327550362|gb|AEA97080.1| tRNA nucleotidyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 397 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 77/405 (19%), Positives = 140/405 (34%), Gaps = 49/405 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+N V + D + P ++ K P + T + Sbjct: 2 QVYLVGGAVRDALLNRKVIERDYVVVGATPQEMLSQGFTQVGKDFPVFLHPKTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D LRRD T+NA+ D G +ID GG Sbjct: 57 ---EYALARTERKSGKGYTGFVCDASSSVTLEEDLLRRDLTVNAIAQDNLGNLIDPYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL N ++ + +A ED LR+ R RF Y ++ L+ S+ L Sbjct: 114 KDLENHLLRHVSEA---FSEDPLRVFRVARFATRYAYLGFTIANETMALMQSMAESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ---EISLDQLSQVIEAEQV 255 LS+ER+W E + L K P + + F +++ + ++ L + E Sbjct: 171 TLSAERVWQETKRSLLEKTPHVFFTVLNQAHGLNDWFAELESNLDAAIATLKTAVALENA 230 Query: 256 FEWKIDS------------------------LLRFIVLISWQDKKSILSMAKKFSLPREI 291 + D ++RF L++ +++ + + + ++ Sbjct: 231 AKENFDKSGQLENKPLETKIPESSSSGTTTLIIRFTALLAHLNEEEAKRLCNRLKVQNQL 290 Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH-YNNLTHQDTCFILQ 350 +I L G + L L + H + Sbjct: 291 SEIVILACKFKDFLLNTQNSPADLLALFNGCDAWRRSERFTLLLKAFAPYAHYKDLDWQR 350 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 I + + D++ G+ G + L K + I S Sbjct: 351 QQEHIENALSAANQVNVQDIIATGVK-GPAIKEALNQAKLDAIAS 394 >gi|39996681|ref|NP_952632.1| polyA polymerase family protein [Geobacter sulfurreducens PCA] gi|39983562|gb|AAR34955.1| polyA polymerase family protein [Geobacter sulfurreducens PCA] gi|298505692|gb|ADI84415.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter sulfurreducens KN400] Length = 880 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 88/411 (21%), Positives = 157/411 (38%), Gaps = 23/411 (5%) Query: 19 LSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L L K D+ VGG VRD L+ DID++ + + + Sbjct: 468 LRDLGKVGDELELPVYAVGGFVRDLLLGAENDDIDVSVEGDGILFAETVANRVGCRVKSH 527 Query: 75 ISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----A 129 +GT I+ D+ + R + V K D RRDFTIN L A Sbjct: 528 AKFGTAVIVFPDGLKVDVASTRLEYYETPGALPTVERSSLKMDLYRRDFTINTLAVKLNA 587 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLV 188 + G +IDY G DL+ +TI+ + + +ED R+ R RF G + ++ L+ Sbjct: 588 EGFGTLIDYFGAYRDLQEKTIRVLHN--LSFVEDPTRVFRAIRFEQRLGFPISRHTENLI 645 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQ 248 + L L R+ +E+ +L + P+ AI+ M G+ + I D+ ++ + L Sbjct: 646 KNAVKMGFLDKLGGRRLLNELVLILREREPVKAILRMSGLGLLRFIHPDL-VLAPNTLQV 704 Query: 249 VIEAEQVFEW--------KIDSL-LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 + E ++V W K+++ + F+ L S + + S+ R LI Sbjct: 705 LDEVKKVITWFDLLYLGEKVETWVVYFLALTSSLPDEGFWGTCTRLSVSEHYREKLIDMR 764 Query: 300 -NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + + ++ ++ D + L Y + V + Sbjct: 765 VHGEQVLEVMTRKAARREDVRRSDIYFWLRGLSPEVLLYIMAKTRSDEVRRYVSLYVTQL 824 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + + +TGDD+ GIP G + IL +N +++ +R Sbjct: 825 RGIVTHITGDDLKTLGIPSGPRYREILDRVLTARLNGEAATRDDEMRIAVR 875 >gi|228957911|ref|ZP_04119651.1| CCA-adding enzyme [Bacillus thuringiensis serovar pakistani str. T13001] gi|229109091|ref|ZP_04238691.1| CCA-adding enzyme [Bacillus cereus Rock1-15] gi|229126949|ref|ZP_04255960.1| CCA-adding enzyme [Bacillus cereus BDRD-Cer4] gi|229144234|ref|ZP_04272648.1| CCA-adding enzyme [Bacillus cereus BDRD-ST24] gi|229149833|ref|ZP_04278061.1| CCA-adding enzyme [Bacillus cereus m1550] gi|228633514|gb|EEK90115.1| CCA-adding enzyme [Bacillus cereus m1550] gi|228639242|gb|EEK95658.1| CCA-adding enzyme [Bacillus cereus BDRD-ST24] gi|228656549|gb|EEL12376.1| CCA-adding enzyme [Bacillus cereus BDRD-Cer4] gi|228674369|gb|EEL29613.1| CCA-adding enzyme [Bacillus cereus Rock1-15] gi|228801827|gb|EEM48704.1| CCA-adding enzyme [Bacillus thuringiensis serovar pakistani str. T13001] Length = 346 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 145/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLEMKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + + + Sbjct: 232 VLLTIRTRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIERYDPTSVERVQSMFHALPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 289 QERQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341 >gi|325132575|gb|EGC55268.1| multifunctional CCA protein [Neisseria meningitidis M6190] gi|325138348|gb|EGC60917.1| multifunctional CCA protein [Neisseria meningitidis ES14902] gi|325142488|gb|EGC64892.1| multifunctional CCA protein [Neisseria meningitidis 961-5945] gi|325198375|gb|ADY93831.1| multifunctional CCA protein [Neisseria meningitidis G2136] Length = 417 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIR------YFLISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ ++++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|167854710|ref|ZP_02477489.1| aspartate kinase III [Haemophilus parasuis 29755] gi|167854124|gb|EDS25359.1| aspartate kinase III [Haemophilus parasuis 29755] Length = 424 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 139/330 (42%), Gaps = 29/330 (8%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L+V+D D + P++++ + P + T +++Y Sbjct: 9 YLVGGAVRDQLLGLAVKDRDWLIVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEY 63 Query: 89 FDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + +G + D +RRD TINA+ D G D+ GG+ DL++ Sbjct: 64 ALARTERKNGNGYNGFICDFTPEVTLEQDLIRRDLTINAIAQDLDGNYHDFYGGIADLKH 123 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A + G + ++ L+ + A L L++E Sbjct: 124 RLLRHVSPA---FAEDPLRVLRVARFAARFHSLGFRIAPETVKLMQEMTACGELAHLTAE 180 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E K P + G K +F +V+ L V + E+ +IDS Sbjct: 181 RVWLETQKAFATDTPHIYFQVLREVGALKVLFPEVEA-----LFGVPQPEK-HHPEIDSG 234 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDK 323 + ++ +L AKK ++ ++ C+ K L+ +I Y + K Sbjct: 235 IHTLM---------VLEQAKKLAVQANDPESVLFAALCHDLGKALTPKDILPHHYGHEQK 285 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 + ++ L T + + + Sbjct: 286 GVAPTEQLANRLKVQAHTKAFAKLVTEFHT 315 >gi|218768243|ref|YP_002342755.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria meningitidis Z2491] gi|73619810|sp|Q9JUB2|CCA_NEIMA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|121052251|emb|CAM08576.1| putative tRNA nucleotidyltransferase [Neisseria meningitidis Z2491] gi|319410490|emb|CBY90851.1| multifunctional CCA protein [includes: CCA-adding enzyme (tRNA nucleotidyltransferase; tRNA adenylyl-/cytidylyl-transferase; tRNA CCA-pyrophosphorylase; tRNA-NT) and 2'-nucleotidase and 2',3'-cyclic phosphodiesterase and phosphatase [Neisseria meningitidis WUE 2594] Length = 417 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 109/281 (38%), Gaps = 30/281 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCN 302 S + ++ + SLP L Sbjct: 225 SGIHTLMTLQRAADMG-------LSLPERYAALLHDLGKAK 258 >gi|15677113|ref|NP_274265.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Neisseria meningitidis MC58] gi|73619811|sp|Q9JZ88|CCA_NEIMB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|7226481|gb|AAF41622.1| tRNA nucleotidyltransferase [Neisseria meningitidis MC58] gi|325140529|gb|EGC63050.1| multifunctional CCA protein [Neisseria meningitidis CU385] Length = 417 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYKFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIR------YFLISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ ++++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|269137819|ref|YP_003294519.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda EIB202] gi|267983479|gb|ACY83308.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda EIB202] gi|304557874|gb|ADM40538.1| tRNA nucleotidyltransferase [Edwardsiella tarda FL6-60] Length = 414 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 87/362 (24%), Positives = 148/362 (40%), Gaps = 57/362 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD + L QD D + P ++ + K P + + Sbjct: 2 KTYLVGGAVRDKYLQLPTQDRDWVVVGATPQALLAQGYQQVGKDFPVFLHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y F D + D LRRD TINA+ D +G++ID GGL Sbjct: 54 SKEEYALARTERKAGQGYTGFSTYFAPDVTLEQDLLRRDLTINAMAEDDEGQLIDPYGGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID----SDGLVASIKAKKGLK 198 DLR R ++ + +A +ED LR+LR RF A + + L+ + + L Sbjct: 114 QDLRQRQLRHVSEA---FVEDPLRVLRVARFAARFAPLGFQVAAPTLALMQRMSQRGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L P + + G +F ++ D+L V Q + Sbjct: 171 HLTPERVWLETEKALSGPAPQVYFQVLRDCGALAVLFPEI-----DRLFGVPAPAQ-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+MA S +R+ ++ + K L+ P + Sbjct: 225 EIDTGIHTLL---------TLAMASHLSDDVAVRFAALT----HDVGKGLTNPNFWPHHH 271 Query: 319 LYGD------KVMIAKLK--------IFLALHYNNLTHQ----DTCFILQVLSDIIHWKK 360 +G + M +L+ L Y++L H +L++L I W++ Sbjct: 272 GHGPAGVRLVREMCQRLRTPNPVRDLALLVAEYHDLIHTVERLRPATLLKLLDTIDVWRR 331 Query: 361 PL 362 P Sbjct: 332 PQ 333 >gi|134280312|ref|ZP_01767023.1| poly(A) polymerase [Burkholderia pseudomallei 305] gi|134248319|gb|EBA48402.1| poly(A) polymerase [Burkholderia pseudomallei 305] Length = 515 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 66 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 125 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 126 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 181 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 182 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 241 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 242 RYREDPVRMLRVVRFAAKLG-FDIEKKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 300 Query: 219 LNAIVHMYN 227 L + + Sbjct: 301 LACLKQLRK 309 >gi|78187013|ref|YP_375056.1| polyA polymerase family protein [Chlorobium luteolum DSM 273] gi|78166915|gb|ABB24013.1| polyA polymerase family protein [Chlorobium luteolum DSM 273] Length = 475 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 78/453 (17%), Positives = 161/453 (35%), Gaps = 58/453 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT-RYKVIPT 73 L I + ++ + +VGG VRD LM DIDI P + K + Sbjct: 9 LFRIGEIADRSQMGCYLVGGYVRDMLMQRPCTDIDIMVLGDPVPFAKTVQKELGGRNFVL 68 Query: 74 SISYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + T ++ ++ R + + + D RRDFTINAL Sbjct: 69 FERFRTARLELPDPEGATFTLELVGARKESYNHDSRKPITLKGTLEDDLSRRDFTINALA 128 Query: 129 A----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 + +G ++D G DL + ++ +D LR++R RF A G Sbjct: 129 LVLNHEGRGTIVDQHCGREDLEKKILRTPLAPLQTYSDDPLRMMRTARFAAQLG-FTPAP 187 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SL 243 + + A + ++I+S+ER SE K++++ P + ++ G+ EI + + + Sbjct: 188 EAVAAMATMHERIRIVSAERTSSEFLKIMQSPEPSVGLKLLHETGVLAEILPETAAMAGI 247 Query: 244 DQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSILSMAK---------- 283 +Q+ + + ++ D LR L+ K +K Sbjct: 248 EQIDGLGHKDTLYHTFQVVDNVARASQDLWLRIAALLHDVAKPQTKRFSKHAGWTFHGHD 307 Query: 284 ------------KFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI 331 + P++ ++ + LS EI L+ Sbjct: 308 AVGVRAAARIFREMRWPQDRLVYVQKMIRMHHRPIPLSKEEITDSAIRRLMFDAGEDLED 367 Query: 332 FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV--------------KYGIPP 377 + L ++T ++ + +++ + + +K + + D++ + +P Sbjct: 368 LMTLCRADVTSKNPRKVARIMQNFGNVEKKIAEVGEKDLLAKWRPPVDGLEIMQELQLPE 427 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G+ VG I + I+ + +E +R+ Sbjct: 428 GRMVGMIKKEMENAIIDGTLPYEREAALEYVRE 460 >gi|218708444|ref|YP_002416065.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio splendidus LGP32] gi|218321463|emb|CAV17415.1| Multifunctional CCA protein [Vibrio splendidus LGP32] Length = 438 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 79/414 (19%), Positives = 147/414 (35%), Gaps = 73/414 (17%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + +VGGAVRD L+N+ D D + P + + K P + T + Sbjct: 25 KDNGLQRYLVGGAVRDKLLNIDSYDRDWVVVGSTPQEMESLGFTAVGKDFPVFLHPKTKE 84 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVID 137 + R++ + Y F D + D +RRD TINA+ D +G++ D Sbjct: 85 --------EHALARTEKKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQDDKGQLYD 136 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKA 193 G DL +R ++ + DA +ED LR+LR RF A N ++ +++ I Sbjct: 137 PYHGQKDLSDRILRHVSDA---FVEDPLRVLRVARFAAKLHYLNFTVASETMVMMSEIVQ 193 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L L++ER+W E +K L +P + + G + ++ D L V + E Sbjct: 194 SGELAHLTAERVWQEWHKSLSTPHPEVFLSILKECGALAVVLPEI-----DALFGVPQPE 248 Query: 254 QVFEWKIDSL------------------LRFIVLISWQDK-------------------K 276 + + +ID+ +RF + K Sbjct: 249 K-WHPEIDTGIHTLMVAQQAALLSQSLPVRFAAQVHDLGKGVTPESEWPSHKMHCHTGLN 307 Query: 277 SILSMAKKFSLPREIRYFLISFFNCNFN-------QKTLSIPEIKKLFYLYGDKVMIAKL 329 I + ++ +P E R + + N + T + + K + L Sbjct: 308 IIKKLCERVRVPNEFRDLALLVCEQHSNIHRAGELKPTTFLKVLNKFDVWRKPDRLDDIL 367 Query: 330 KIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 A H ++ + + ++ + + ++ G GK + Sbjct: 368 LCCQADHAGRKGLENQPYPQKARFEVAYQAALQVEVKA--IIADGFQ-GKDIRE 418 >gi|325917731|ref|ZP_08179919.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas vesicatoria ATCC 35937] gi|325536060|gb|EGD07868.1| tRNA nucleotidyltransferase/poly(A) polymerase [Xanthomonas vesicatoria ATCC 35937] Length = 422 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 84/409 (20%), Positives = 154/409 (37%), Gaps = 63/409 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ + D D + ++ K K P + + Sbjct: 2 KIYLVGGAVRDALLGQAAGDRDWVVVGADQAQMQAQGFKPVGKDFPVFLHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G VID GG Sbjct: 54 SGEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAMARDEDSGTVIDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL+ R ++ +G A +ED +R+LR RF A D+ L+ + A L Sbjct: 114 ARDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPDTAALMREMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------LDQLSQV 249 L ER+W E+ + L P + +++ + I ++ + ++ Sbjct: 171 DSLVPERVWQELRRALTCAQPSAFLRTLHDADALRVILPELDALYGVPQRAEFHPEVDTG 230 Query: 250 IEAEQVFEWKI-----DSLLRFIVLISWQDKK-------------------SILSMAKKF 285 I E V + D+L+ F L K + ++ ++ Sbjct: 231 IHQEMVSDMAARLAPGDALIGFAALSHDLGKALTPPDQWPRHLMHEQRGVAPLQALCERL 290 Query: 286 SLPREIRYFLISFFNCNFNQKTL------SIPEIKKLFYLYGDKVMIAKLKI-FLALHYN 338 +P++ R+ ++ + N L ++ E+ + IA+L + A Sbjct: 291 KVPQDYRHLAVTACREHLNIHRLAELRHRTVHELLVRCDAFRRPERIAQLALVCEADKRG 350 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 L +D + +++ + D+ G+ G ++G L Sbjct: 351 RLGSEDAAYPQG--AELKRLHAAALAINARDLAAEGL-HGPQIGEALTK 396 >gi|261493599|ref|ZP_05990119.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495437|ref|ZP_05991885.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308942|gb|EEY10197.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310781|gb|EEY11964.1| tRNA adenylyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 416 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 142/359 (39%), Gaps = 53/359 (14%) Query: 30 CIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L V+D D ++++ + P + T + Sbjct: 4 YLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGADFPVFLHPETKE------- 56 Query: 89 FDITTLRSDLITDGRYAKVVFT----RDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R + Y + + D +RRD TINA+ D+ + D GG+ D Sbjct: 57 -EYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDENSTLFDPYGGVQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L NR ++ + A ED LR+LR RF A + ++ L+ + L+ L Sbjct: 116 LENRLLRHVSPA---FSEDPLRVLRVARFAARFHSFGFTIAPETLKLMREMVQSGELEHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER+W E K E NP + G K +F + LD+L V + Q +I Sbjct: 173 TAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPE-----LDRLFGVPQPPQ-HHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 DS ++ +L AK+ + E L+ C+ K L+ +I Y + Sbjct: 227 DSGKHTLM---------VLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYGH 277 Query: 321 GD------KVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKKP 361 + + +LKI + H + + ++++ + + W+KP Sbjct: 278 EVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWRKP 336 >gi|309973279|gb|ADO96480.1| tRNA nucleotidyltransferase/23-cyclic phosphodiesterase/2nucleotidase and phosphatase [Haemophilus influenzae R2846] Length = 416 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGA+RD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KIYLVGGAIRDQLLGLPVKDRDWIVVGADPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQREDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFPEI-----DALYGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|229138330|ref|ZP_04266924.1| CCA-adding enzyme [Bacillus cereus BDRD-ST26] gi|228645095|gb|EEL01333.1| CCA-adding enzyme [Bacillus cereus BDRD-ST26] Length = 346 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 71/354 (20%), Positives = 148/354 (41%), Gaps = 15/354 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRH----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQKREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++++ A L+ ++ ERI E KLL + A+ + +F + Sbjct: 117 G-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKALKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEEKLLKATQYKWDSFEADIEAWAFFLYCIGEEHPAVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + Y G + +++ A + H + + + Sbjct: 232 VLLTIRKRKEKDWDTV--FLYKTGIHIAEMAERVYEA-MIESYDHTAVNRVQTLFQALPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + +TG+D++ + PG V ++ ++ + + +E + L++ Sbjct: 289 KNRQEMNVTGNDLLNWASKKPGPWVAEMIQKIEEAIVQGNVVNEKECIREWLQE 342 >gi|254673906|emb|CBA09690.1| tRNA nucleotidyltransferase [Neisseria meningitidis alpha275] Length = 417 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFAARYRFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIR------YFLISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ ++++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|229043381|ref|ZP_04191098.1| CCA-adding enzyme [Bacillus cereus AH676] gi|228725962|gb|EEL77202.1| CCA-adding enzyme [Bacillus cereus AH676] Length = 346 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 146/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVVENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++GK++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGKMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSTL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G +++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLEMKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + + ++ Sbjct: 232 VLLTIRTRKEKDWDTV--LLYKTGIHIAEMAERVYEA-MIERYDPTSVERVQSMFHALLI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 289 QERQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341 >gi|149911043|ref|ZP_01899671.1| putative tRNA nucleotidyltransferase [Moritella sp. PE36] gi|149805869|gb|EDM65857.1| putative tRNA nucleotidyltransferase [Moritella sp. PE36] Length = 386 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 124/318 (38%), Gaps = 34/318 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L++L V+D D + P ++ + K P + Sbjct: 2 QIYLVGGAVRDKLLSLPVKDKDFVVVGATPAEMLAQGYQQVGKDFPVFLHP--------N 53 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D +RRD TINA+ D+ G VID + Sbjct: 54 SKQEYALARTERKSGSGYTGFTCYAAPDVTLEQDLVRRDLTINAMVEDEHGHVIDPLNAR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ I + ED LR+LR RF A + + ++ L+ + L Sbjct: 114 LDLDNRLLRHISE---SFSEDPLRVLRVARFAARFHQLGFTIAKETLTLMQEMTQAGDLA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS----------- 247 L+ ER+W E+ K L A NP + G I ++ + + Sbjct: 171 ELTPERVWQEVEKTLSADNPEVFFQVLREIGALAVILPELDALFNLAVKNSENDSTSIGQ 230 Query: 248 -QVIEAEQVFEWKIDSLLRFIVLISWQDKK--SILSMAKKFSLPREIRYFLISFFNCNFN 304 + + +Q D +RF L+ D SI ++AK+ +P E R + N Sbjct: 231 QALTQLKQSASLSTDLAVRFAALMQQLDHHQISIKALAKRCKVPNEHRDLALQVSAQQEN 290 Query: 305 QKTLSIPEIKKLFYLYGD 322 + + L+ + Sbjct: 291 IHNARSLDPADIIRLFDN 308 >gi|148545680|ref|YP_001265782.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas putida F1] gi|166233872|sp|A5VXI8|CCA_PSEP1 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|148509738|gb|ABQ76598.1| Polynucleotide adenylyltransferase region [Pseudomonas putida F1] Length = 368 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 138/369 (37%), Gaps = 33/369 (8%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V DID + + ++ + P + T + + Sbjct: 6 VGGAVRDRLLGRPVSDIDWLVVGATVEEMLAKGYRPVGADFPVFLHPKTGE--------E 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D +RRD TINA+ D+ G V D G DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKQDLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y G + D L+ I A L+ L++ Sbjct: 118 KRLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQALTA 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKI 260 ER W EI + L P + G +E+ ++ + S L L Q EQ Sbjct: 175 ERSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDSSRTLAALEQAAVHEQPLH--- 231 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK---TLSIPEIKKLF 317 +R+ L+ SI ++ ++ PRE + + C L + +L Sbjct: 232 ---VRWACLLRGLSPTSIKAVNQRLKAPRECQELAMLTGECLAQGNQALELPATALLELL 288 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 + + + FL + D + + +V+ G+ Sbjct: 289 QKFDVYRRPQRFEDFLVV-CEMAARGDGEQGYPQADYLRRAAAAARAVDVKPLVQAGLT- 346 Query: 378 GKKVGNILV 386 G+ +G L Sbjct: 347 GQALGEALK 355 >gi|167721064|ref|ZP_02404300.1| poly(A) polymerase [Burkholderia pseudomallei DM98] Length = 456 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 34/249 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + I + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 32 PALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 91 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS-----------------------DLITD--- 101 + + + ++ +++T R+ D T Sbjct: 92 L----IGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPADAAPAKRLKRDELDRRTHAVD 147 Query: 102 --GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHH 158 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 148 ASGRVLRDNVWGEQHEDAARRDFTINAMYYDPASQTVLDYHDGMADMRARLLRMIGDPAT 207 Query: 159 RILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNP 218 R ED +R+LR RF A G +I+ + + + + R++ E+ KLL + + Sbjct: 208 RYREDPVRMLRVVRFAAKLG-FDIEEKTREPIKELADLINNVPAARLFDEMLKLLLSGHA 266 Query: 219 LNAIVHMYN 227 L + + Sbjct: 267 LACLKQLRK 275 >gi|294634621|ref|ZP_06713155.1| multifunctional CCA protein [Edwardsiella tarda ATCC 23685] gi|291091951|gb|EFE24512.1| multifunctional CCA protein [Edwardsiella tarda ATCC 23685] Length = 415 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 152/359 (42%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD ++L+ D D + P ++ + K P + ++ Sbjct: 2 KIYLVGGAVRDKYLHLTTHDRDWVVVGATPQCLLAQGYQQVGKDFPVFLHPH-----SKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R + G + D LRRD TINA+ D G++ID GGL+DL Sbjct: 57 EYALARTERKAGQGYTGFTTHFAPDVTLEQDLLRRDLTINAMAEDDTGRLIDPYGGLDDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILS 201 + R ++ + A +ED LR+LR RF A + G + + L+ + + L L+ Sbjct: 117 QQRWLRHVSPA---FVEDPLRVLRVARFAARFFSLGFRVAEPTLELMRQMAQQGELNHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L P + + G +F ++ D+L V + + +ID Sbjct: 174 AERVWLETEKALAGPAPQVYFQVLRDCGALAILFPEI-----DRLFGVPAPVK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ L+MA + S +R+ ++ + K L+ P + +G Sbjct: 228 TGIHTLL---------TLAMATRLSEDLAVRFAALT----HDVGKGLTNPNFWPHHHGHG 274 Query: 322 D------KVMIAKLKI--------FLALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 + + +L+I L Y++L H +L++L I W++P Sbjct: 275 PAGVRLVRELCQRLRIPNPLRDLAVLVAEYHDLIHTVDRLRPSTLLKLLDSIDVWRRPQ 333 >gi|119356930|ref|YP_911574.1| metal dependent phosphohydrolase [Chlorobium phaeobacteroides DSM 266] gi|119354279|gb|ABL65150.1| metal dependent phosphohydrolase [Chlorobium phaeobacteroides DSM 266] Length = 470 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 165/457 (36%), Gaps = 58/457 (12%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR-YKVIPT 73 LI I L ++ + +VGG VRD LM+ S DIDI P + + + Sbjct: 13 LIEIGDLADRKGVPAYVVGGYVRDMLMHRSCSDIDIMVIGDPLPFAQTIKNELPGRNLVV 72 Query: 74 SISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + T ++ +I R + + T + D RRDFTINAL Sbjct: 73 FERFRTAQLEVSDSEKQTFKLEIVGARKESYNPDSRKPITETGTLEEDLARRDFTINALA 132 Query: 129 ADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 G ++D G+ L R ++ + +D LR++R RF A + +D Sbjct: 133 LSLNSSSRGLLVDQFNGIEHLSGRILRTPLEPKQTFSDDPLRMMRAARFSAQL-DFRLDE 191 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SL 243 ++A + + ++I+S ERI E K+++ P + +Y G+ KE +V + + Sbjct: 192 AIILAMNEMHERIRIVSRERISQEFLKIMQCPKPSAGLSILYETGLLKEFMPEVALMAGI 251 Query: 244 DQLSQVIEAEQVFEW----------KIDSLLRFIVLISWQDKKSILSM----AKKFSLPR 289 +Q+ + + ++ LR L+ K F Sbjct: 252 EQVDGLGHKDTLYHTFQVIDNVAAQSDKLWLRVAALLHDIAKPVTKRFYPSSGWTFHGHE 311 Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI------------------ 331 + L+S ++K+ ++ + ++K +I Sbjct: 312 AVGIRLVSKIFTAMRWPLEPSEYVRKMVRMHHRPIPLSKEEITDSAVRRLIVDAAEDLDD 371 Query: 332 FLALHYNNLTHQDTCFILQVL-------------SDIIHWKKPLFPLTGDDVVK-YGIPP 377 + L ++T ++ + +++ ++ K P+ G D++ G+ Sbjct: 372 LMLLCRADVTSKNPRKVARIMSNFNNVEQRISEVAEKDLLAKWRPPIDGKDIMDTLGLSE 431 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIAS 414 GK VG + + I+ +E ++ L Sbjct: 432 GKLVGIMKSRMENAVIDGIIPYEREAALDYIKMLYRE 468 >gi|114775546|ref|ZP_01451114.1| tRNA nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] gi|114553657|gb|EAU56038.1| tRNA nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] Length = 468 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 77/455 (16%), Positives = 161/455 (35%), Gaps = 60/455 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 +++ + L + +VGG VRD +++++ +D D+ L + + + Sbjct: 15 PDLLPPEILFLCRHLATAGGDAWLVGGCVRDLMLHINPKDYDLEVYGLTEAALSDALQQL 74 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDW----KADSLRRDFT 123 + +G K+ R+ D+ R++ + + V D + +LRRDFT Sbjct: 75 GRCEMVGKQFGVHKLWFRQMEIDVALPRTESKSGSGHRGFVVHTDPHLTPEIATLRRDFT 134 Query: 124 INALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 INA+ D Q +++D GG +DL ++ + A ED LR LR +F A + ++ Sbjct: 135 INAMMYDPLQHRLLDLHGGQSDLDEGILRHVSPA---FAEDPLRPLRAMQFAARF-RFHL 190 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + L + RIW E K A++P ++ +++ G + ++Q + Sbjct: 191 APETAAMCRTLVAEADTLPASRIWIEWQKWSHARSPSCGLIALHDSGWLAC-YPELQALQ 249 Query: 243 ---------------------LDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSI--- 278 +DQ +++ + + + LL F L K Sbjct: 250 QCPQDPRWHPEGDVWVHTLQVVDQAAEMAKKHHLSRPDREHLL-FAALCHDLGKPETTVQ 308 Query: 279 -------------------LSMAKKFSLPREIRYFLISFFNCNFNQ--KTLSIPEIKKLF 317 + ++ P I ++ + + +++L Sbjct: 309 QPDGRIGSPGHSKAGVPLTRRLLQRMHAPGAIGKIVVPLVQEHITHLFGDPTARAVRRLA 368 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP----LTGDDVVKY 373 + + + A + L L ++ + GD +++ Sbjct: 369 WRLQPAHIELWEMLVEADASGRAPAPPSRPALPWLQLAQSMQQHRQAAARIVDGDMLMQL 428 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 GI PG +G +L Q +N F +Q + Sbjct: 429 GIEPGPVLGEMLAKAYQAQLNGEFNDAQGARLWCI 463 >gi|86148795|ref|ZP_01067063.1| tRNA nucleotidyltransferase [Vibrio sp. MED222] gi|85833414|gb|EAQ51604.1| tRNA nucleotidyltransferase [Vibrio sp. MED222] Length = 438 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 26/256 (10%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIK 81 + +VGGAVRD L+N+ D D + P + + K P + T + Sbjct: 25 KDNGLQRYLVGGAVRDKLLNIDSYDRDWVVVGSTPQEMESLGFTAVGKDFPVFLHPKTKE 84 Query: 82 IICRKKYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVID 137 + R++ + Y F D + D +RRD TINA+ D G++ D Sbjct: 85 --------EHALARTEKKSGSGYTGFECYFAPDVSLEEDLMRRDLTINAIAQDDNGQLYD 136 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKA 193 G DL +R ++ + DA +ED LR+LR RF A N ++ +++ I Sbjct: 137 PYHGQKDLSDRILRHVSDA---FVEDPLRVLRVARFAAKLHHLNFTVASETMVMMSEIVQ 193 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 L L++ER+W E +K L +P + + G + ++ D L V + E Sbjct: 194 SGELAHLTAERVWQEWHKSLSTPHPEVFLSILKECGALAVVLPEI-----DALFGVPQPE 248 Query: 254 QVFEWKIDSLLRFIVL 269 + + +ID+ + +++ Sbjct: 249 K-WHPEIDTGIHTLMV 263 >gi|254498742|ref|ZP_05111458.1| tRNA nucleotidyltransferase [Legionella drancourtii LLAP12] gi|254352070|gb|EET10889.1| tRNA nucleotidyltransferase [Legionella drancourtii LLAP12] Length = 425 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 81/417 (19%), Positives = 152/417 (36%), Gaps = 69/417 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+NL V++ D + P+++++ + + P + T + Sbjct: 17 KVYLVGGAVRDQLLNLPVKERDWVVVGASPEQLLKQKFRQVGRDFPVFLHPQTNE----- 71 Query: 87 KYFDITTLRSDLITDGRY----AKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + + D RRD TINA+ D+QG +ID G Sbjct: 72 ---EYALARTERKSAPGYYGFACDFNRSVTLEEDLARRDLTINAMAMDEQGVLIDPYQGQ 128 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ I A ED +R+LR RF A + ++ L+ S+ + L Sbjct: 129 RDLANRVLRHISPA---FAEDPVRVLRLARFAARFHYLGFTVAEETRSLMYSMVTQGELA 185 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE----- 253 L +ER+W E + LE KNP I+ + + + I ++Q + E Sbjct: 186 HLVAERVWQEWQRSLEEKNPEQFIITLRSCDALRVILPELQALFGVPNPYRYHHEIDSGV 245 Query: 254 -------QVFEWKIDSLLRFIVLISWQDKKS-------------------ILSMAKKFSL 287 D ++RF L K + I S+ + + Sbjct: 246 HTLLVLQSAAALTTDPIIRFAALTHDLGKATSPMSNWPSHYGHEARGVPIIESLCLRLRI 305 Query: 288 PREIR-------YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYN-- 338 P E R F + + + +++ + ++ L A Sbjct: 306 PNEYRTLATVVSRFHLMIHRLLELRADTIVRLLEQAYAFRRPQLFYNMLIACQADAEGCG 365 Query: 339 -NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 + +Q + +L++ + ++ G G + + L + + Sbjct: 366 REIDYQQSALWHHLLAECAK-------VNVQTIITQGYTGG-AIKHALHQHRVACVE 414 >gi|228938747|ref|ZP_04101350.1| CCA-adding enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971629|ref|ZP_04132251.1| CCA-adding enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978238|ref|ZP_04138615.1| CCA-adding enzyme [Bacillus thuringiensis Bt407] gi|228781255|gb|EEM29456.1| CCA-adding enzyme [Bacillus thuringiensis Bt407] gi|228788042|gb|EEM35999.1| CCA-adding enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820922|gb|EEM66944.1| CCA-adding enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 346 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 148/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSAL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLKATQYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A+ + + I Sbjct: 232 VLLAIRTRKEKDWDTV--LLYKTGIYIAEMAERVYEAMIESYDPTSVKRVQSMFHALPIQ 289 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ +TG+D++ + PG V ++L ++ + + +E + L+ Sbjct: 290 GRQ-EMNVTGNDLLNWANKKPGPWVADMLQKIEEAIVKGNVVNEKERIREWLQ 341 >gi|301156041|emb|CBW15512.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Haemophilus parainfluenzae T3T1] Length = 414 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 67/317 (21%), Positives = 131/317 (41%), Gaps = 40/317 (12%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L V+D D + P+ ++ + K P ++ + Sbjct: 4 YLVGGAVRDQLLGLPVKDRDWVVVGATPEMLLAQGYQQVGKDFPVFLNPQ--------NH 55 Query: 89 FDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + G + D +RRD TINA+ D+ GK+ D G+ D Sbjct: 56 EEYALARTERKSGKGYTGFICDFSDDITLEQDLIRRDLTINAIAQDKDGKLHDPYHGVED 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 + R ++ I A ED LR+LR RF A + ++ L+A + + L L Sbjct: 116 IHQRILRHISPA---FAEDPLRVLRVARFAARFHHLGFSIAGETLKLMAELTEQGELAHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER+W E K L +P ++ G K +F ++ + + + +I Sbjct: 173 TAERVWMETEKALNEPHPEIYFETLHQVGALKVLFPEIAALD------GVPNPAKYHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 DS + ++++ + + + + +L + F C+ K L+ E + + Sbjct: 227 DSFIHTMLVL-----QQAVKLTENTNLNKSAVRF---AAICHDLGKALTPKENWPSHHGH 278 Query: 321 GD------KVMIAKLKI 331 + + +L++ Sbjct: 279 EKAGIKPTRSLCKRLRV 295 >gi|290474853|ref|YP_003467733.1| tRNA nucleotidyl transferase [Xenorhabdus bovienii SS-2004] gi|289174166|emb|CBJ80953.1| tRNA nucleotidyl transferase [Xenorhabdus bovienii SS-2004] Length = 393 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 76/394 (19%), Positives = 148/394 (37%), Gaps = 43/394 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVR+ L+ L V + D P+ ++ + K P + T + Sbjct: 2 KVYLVGGAVRNQLLGLPVTERDWVIVGGNPEELLSQGYQQVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ +G++ID G Sbjct: 57 ---EYALARTERKSGQGYTGFTCYAAPDVTLEEDLLRRDLTINAIAQTAEGELIDPYHGA 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL++R ++ + A ED LR+LR RF A++ + ++ L+ + L Sbjct: 114 DDLKHRILRHVSGA---FSEDPLRVLRLARFAAYFAHLSFSIAPETQSLITKMVKSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLDQLS 247 L+ ER+W E K L + +P +++ G +F ++ + S Q+ Sbjct: 171 SLTPERVWRETEKALTSPSPQIYFQVLHDCGALAILFPEIDRLFGVAPISSWEKSSLQMD 230 Query: 248 QVIEAEQVFEWKIDSL----LRFIVLISWQDKKSILSMAKKFSLPREIRYF--LISFFNC 301 I + + +RF L + + + M ++ +P R +++ ++ Sbjct: 231 AGIHSLKALHMATQLSQEIDIRFASLCAHTEAIQVKQMCERLRIPNTARDLAVIVAQYHD 290 Query: 302 NFNQKTLSIPEIKKLFY----LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + PE + + I +L + T + Q Sbjct: 291 WVHTAEQLPPETLLALFNAVDAWRKPQRIEQLILCSQADARAYTELEASRYPQGRYLRDA 350 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + + + DV+ G G ++ L +Q Sbjct: 351 FT-TVSQVNVQDVIARGFQ-GAEIRTELDRQRQL 382 >gi|115350706|ref|YP_772545.1| poly(A) polymerase [Burkholderia ambifaria AMMD] gi|115280694|gb|ABI86211.1| poly(A) polymerase [Burkholderia ambifaria AMMD] Length = 461 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 33/246 (13%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 12 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 70 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD-----G 102 + + + ++ +++T R+ D T G Sbjct: 71 ---IGRRFQIVHVQFGQELIEVSTFRAMVDAPPEAAAAEPPKRLKRDELDRRTHAVDASG 127 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 128 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADIRARLLRMIGDPATRYR 187 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A G I++ + + + R++ E+ KLL + L Sbjct: 188 EDPVRMLRVVRFAAKLG-FEIETHTREPINALADLINNVPAARLFDEMLKLLLSGQALAC 246 Query: 222 IVHMYN 227 + + Sbjct: 247 LQRLRK 252 >gi|262376603|ref|ZP_06069831.1| tRNA nucleotidyl transferase [Acinetobacter lwoffii SH145] gi|262308313|gb|EEY89448.1| tRNA nucleotidyl transferase [Acinetobacter lwoffii SH145] Length = 411 Score = 220 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 78/421 (18%), Positives = 151/421 (35%), Gaps = 63/421 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D + P +++ + + K P + T + Sbjct: 2 QVYLVGGAVRDHLLGHPYHEKDYVVVGATPAQMLDLGYQPVGKDFPVFLHPQTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ D G+V D GG Sbjct: 57 ---EYALARTERKSGAGYHGFEFHTDVSVTLEQDLIRRDLTINAMAMDDAGQVYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL NR ++ + DA +ED LR+LR RF A Y ++ L+ + L Sbjct: 114 QDLENRILRHVSDA---FVEDPLRVLRIARFAARYTSAGFVIADETLALMQRLTESGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQVIEAEQVFE 257 L+ ER+W E ++ L ++ + G K +F ++ + + Q + Sbjct: 171 ALTPERVWKETSRALSERHADVYFEVLRQCGALKVLFPEIDALYGIPQRPEYHPEIDCGI 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + SL +RF VL+ K K + + + + Sbjct: 231 HTMMSLQQACRQNYSLDVRFAVLVHDLGKALTPVEELPRHIMHEERGIKPVNELCDRLKV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLAL----HYNNL 340 P + ++ + L + +L +++ F+ L Sbjct: 291 PTYTKQLALAVCKEHLKCHQAFNLKPGTLWRLLQRLDVLRRPERVEAFVQACECDSRGRL 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 +D + ++ + + + D+ G +G +L+ ++ + Sbjct: 351 GLEDRAY--PQAQYVLDAMQIVRAIKAQDLPAD--IQGADIGEMLIE-RRIQALGELKTQ 405 Query: 401 Q 401 Q Sbjct: 406 Q 406 >gi|218783041|ref|YP_002434359.1| polynucleotide adenylyltransferase region [Desulfatibacillum alkenivorans AK-01] gi|218764425|gb|ACL06891.1| Polynucleotide adenylyltransferase region [Desulfatibacillum alkenivorans AK-01] Length = 896 Score = 220 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 78/414 (18%), Positives = 151/414 (36%), Gaps = 28/414 (6%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 + + ++ +VGG VRD +M+ +D D+ R F++ + + +GT Sbjct: 491 KIADAMGLEAFLVGGFVRDLVMSHKNEDFDVVVEGDGIAFARRFAQVHGYRVHSHSEFGT 550 Query: 80 IKII-CRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GK 134 II D+ + R + VV T K D RRDFT+N + G Sbjct: 551 AVIIMEDGFKIDVASARFEYYASPASLPVVETSSLKMDLYRRDFTVNTMAIQINEKSFGT 610 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKA 193 +IDY G D++ + I+ + + +ED R+ R RF YG + L+ + Sbjct: 611 LIDYFGAQRDIKAKAIRVLHN--LSFVEDPTRVFRAIRFEQRYGFSIGKLTSNLIKNAVK 668 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE 253 + LS R++SE+ +LE +NP+ A+ M + I D+ + ++ + Sbjct: 669 MDFFRHLSGRRLFSELKLILEDENPIGAVDRMAGYNLLPFIHPDL-DFGPEKQDLFESVK 727 Query: 254 QVFEWK---------IDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 +V W + ++F+ L D+ + + + + + Sbjct: 728 EVLTWHDLQFMDDSYMKWAVQFLALFHGFDQDQVDAALLRLEIAPKFHDLFYEHRQYGRQ 787 Query: 305 ---QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 + + Y + L LA + + L L + Sbjct: 788 CLYRLEREDKMVNSELYRMLTLLPTEMLLFLLARAKSKKAKRRLTRFLTELKGVA----- 842 Query: 362 LFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 L+G + + GI PG +L ++ +++ L +LI + Sbjct: 843 -CLLSGKTLKQMGIKPGPIYKKVLDAVLDARLDGKVFTFEDE-MALAVRLINDA 894 >gi|301631513|ref|XP_002944842.1| PREDICTED: hypothetical protein LOC100491036 [Xenopus (Silurana) tropicalis] Length = 745 Score = 220 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 132/309 (42%), Gaps = 43/309 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++++ L + IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 38 PELVDRRAVDVVRTLQDAGFAAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFRRA- 96 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 97 ---FIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAEQVSGNERTSKAQLSDMQHA 153 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFT+NA+Y D + + V+DY G+ D + R ++ IGD Sbjct: 154 VDASGRVLRDNVWGPQDQDAARRDFTVNAMYYDPETQVVVDYHKGIEDAQKRVLRMIGDP 213 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A ++ + ++ L+ + R++ E+ KLL+ Sbjct: 214 ATRYREDPVRIIRAVRFAAKLSSLGFALEPKTGKPLVASQHLLQEVPQSRLFDEMLKLLQ 273 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA------EQVFEWKIDSLLRFIV 268 + L ++ + G+ K I+ + + + ++ A +V E K + + Sbjct: 274 TGHALASVQQLQKLGLEKGIYPLLDVVVQRVGNPLVRAALQDTDRRVAEGKAVAPSFLLA 333 Query: 269 LISWQDKKS 277 + WQD K+ Sbjct: 334 CVLWQDVKA 342 >gi|262170607|ref|ZP_06038285.1| tRNA nucleotidyltransferase [Vibrio mimicus MB-451] gi|261891683|gb|EEY37669.1| tRNA nucleotidyltransferase [Vibrio mimicus MB-451] Length = 403 Score = 220 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 146/348 (41%), Gaps = 27/348 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + T ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D+ G+VID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDELGQVIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLAHLGFTVAEETMQLMADIAQSGELGHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + + LD+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPE-----LDRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFY 318 + + +++ Q S+ +FS ++ + + K + I+ L Sbjct: 228 TGIHTLMVTK-QAALLSDSLPVRFSAQVHDLGKGVTPPSEWPSHKLHCHTGLKIIESLCD 286 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPLF 363 L + + ++N+ D L+VL + W+KP Sbjct: 287 RIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPEC 334 >gi|219870526|ref|YP_002474901.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus parasuis SH0165] gi|219690730|gb|ACL31953.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus parasuis SH0165] Length = 423 Score = 220 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 81/357 (22%), Positives = 152/357 (42%), Gaps = 47/357 (13%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+ L+V+D D + P++++ + P + T +++Y Sbjct: 8 YLVGGAVRDQLLGLAVKDRDWLIVGATPEQLLAQGYQQVGNDFPVFLHPKT-----KEEY 62 Query: 89 FDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R + +G + D +RRD TINA+ D G D+ GG+ DL++ Sbjct: 63 ALARTERKNGNGYNGFICDFTPEVTLEQDLIRRDLTINAIAQDLDGNYHDFYGGIADLKH 122 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF A + G + ++ L+ + A L L++E Sbjct: 123 RLLRHVSPA---FAEDPLRVLRVARFAARFHSLGFRIAPETVKLMQEMTACGELAHLTAE 179 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E K P + G K +F +V+ L V + E+ +IDS Sbjct: 180 RVWLETQKAFATDTPHIYFQVLREVGALKVLFPEVEA-----LFGVPQPEK-HHPEIDSG 233 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD- 322 + ++++ + +A + + P + + + C+ K L+ +I Y + Sbjct: 234 IHTLMVL-----EQAKKLAARANDPESVLFAAL----CHDLGKALTPKDILPHHYGHEQK 284 Query: 323 -----KVMIAKLKI------------FLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 K + +LK+ H + +T ++++ + + W+KP Sbjct: 285 GVAPTKQLANRLKVPAHTKAFAKLVTEFHTHNHKITELRPETVVKLFNKLDVWRKPE 341 >gi|90020374|ref|YP_526201.1| peptidase M, neutral zinc metallopeptidases, zinc-binding site [Saccharophagus degradans 2-40] gi|89949974|gb|ABD79989.1| Polynucleotide adenylyltransferase region [Saccharophagus degradans 2-40] Length = 429 Score = 220 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 90/427 (21%), Positives = 160/427 (37%), Gaps = 75/427 (17%) Query: 19 LSLLNKGEDK--SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSI 75 +++LN K +VGGAVRD+L+ L V++ D + P++++ K P + Sbjct: 9 VNILNTSTYKMQIFLVGGAVRDTLLQLEVKERDWVVVGATPEQLIAQNFVPVGKDFPVFL 68 Query: 76 SYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQ 131 T + + R++ + Y + D +RRD TINA+ D+ Sbjct: 69 HPKTKE--------EYALARTERKSGAGYTGFECYAAQDVTLEEDLIRRDLTINAIAQDE 120 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVA 189 QG + D G DL NR ++ + DA ED +RILR RF A Y + +I L+ Sbjct: 121 QGNLYDPYNGQADLNNRILRHVSDA---FTEDPVRILRIARFAARYHKLGFSIAPTTLML 177 Query: 190 S--IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 + A + L ER+W E+++ LE NP + + G + + LD+L Sbjct: 178 MKSMVADGEVDHLVPERVWKEMSRALEEDNPEIFFQVLRHCGALARVLPE-----LDRLF 232 Query: 248 QVIEAEQVFEWKIDSLL------------------RFIVLISWQDK-------------- 275 V + Q +ID+ + RF L+ K Sbjct: 233 GVPQPPQ-HHPEIDTGVHALLSLRAAVRVTQSLPARFAALVHDLGKGVTPKEKWPSHHGH 291 Query: 276 -----KSILSMAKKFSLPREIRY--FLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIA 327 I ++ K+ ++P R L + F+ + ++ L + K Sbjct: 292 ETTGLAPIKALCKRLAVPNPCRDLALLTAEFHTHSHRAFELRPDTLLKTLERLDALRKPE 351 Query: 328 KLKIFLALHYNNLTHQDTCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPP---GKKVG 382 + + FL + + + + + +T DV+ P G ++G Sbjct: 352 RFEEFLIACMCDSRGRTDLENVAYPQREYLAGAFTCISNVTAKDVLAQ--QPDLRGPEIG 409 Query: 383 NILVHCK 389 L + Sbjct: 410 EQLRALR 416 >gi|323499426|ref|ZP_08104398.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio sinaloensis DSM 21326] gi|323315482|gb|EGA68521.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio sinaloensis DSM 21326] Length = 403 Score = 220 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 144/355 (40%), Gaps = 49/355 (13%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+N++V D D + P+++++ K P + T + Sbjct: 4 YLVGGAVRDQLLNIAVYDKDWVVVGATPEQLVKQGFTAVGKDFPVFLHPQTKE------- 56 Query: 89 FDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ T Y F D + D +RRD TINA+ D G ++D G D Sbjct: 57 -EHALARTERKTGSGYTGFECYFAADVTLEEDLMRRDLTINAMAQDDAGHIVDPYQGQQD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKIL 200 L +R ++ + DA +ED LR+LR RF A ++ L+ +I L+ L Sbjct: 116 LHDRILRHVSDA---FVEDPLRVLRVARFAAKLHHLGFTVANETMELMRTIADSGELRHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER+W E +K L ++P + + G + + + LD L V + E+ + +I Sbjct: 173 TAERVWQEWHKSLSTQSPQVFLSILRECGALEVVLPE-----LDALFGVPQPEK-WHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIPEI 313 D+ + ++ + A + S +R+ + + Sbjct: 227 DTGIHTLM---------VAEQAARLSDSLPVRFASQVHDLGKGITPESEWPSHKMHCHTG 277 Query: 314 KKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKP 361 KL D+V + L+L + L+VL+ W+KP Sbjct: 278 LKLIKKLCDRVRVPNEYRDLSLMVCEQHSNIHRAAELRPETKLKVLNKFDVWRKP 332 >gi|167586239|ref|ZP_02378627.1| poly(A) polymerase [Burkholderia ubonensis Bu] Length = 460 Score = 220 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 31/245 (12%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 16 PALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 75 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS--------------------DLITD-----G 102 + + + ++ +++T R+ D T G Sbjct: 76 L----IGRRFQIVHVQFGQELIEVSTFRALVDPPPAEAEPPKRLKRDELDRRTHAVDASG 131 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 132 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRYR 191 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A G +I+ + + + R++ E+ KLL + + L Sbjct: 192 EDPVRMLRVVRFAAKLG-FDIELHTREPINALADLINNVPAARLFDEMLKLLLSGHALAC 250 Query: 222 IVHMY 226 + + Sbjct: 251 LKQLR 255 >gi|121608734|ref|YP_996541.1| poly(A) polymerase [Verminephrobacter eiseniae EF01-2] gi|121553374|gb|ABM57523.1| poly(A) polymerase [Verminephrobacter eiseniae EF01-2] Length = 535 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 131/309 (42%), Gaps = 43/309 (13%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++++ L + + IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 39 PELVDRRAADVVATLKQAGFAAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKSLFRRA- 97 Query: 68 YKVIPTSISYGTIKIICRK----KYFDITTLRS--------------------------D 97 + + ++ + + +++T R+ Sbjct: 98 ---FIIGRRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAGQVSGNEKTSKAQLSGMQHA 154 Query: 98 LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV-IDYVGGLNDLRNRTIKFIGDA 156 + GR + D+ RRDFTINA+Y D ++ +DY GL D R +T++ IG+ Sbjct: 155 VDASGRVLRDNVWGPQDEDATRRDFTINAMYYDPVSQIVVDYHKGLQDARKKTLRMIGEP 214 Query: 157 HHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSSERIWSEINKLLE 214 R ED +RI+R RF A ID+ +++ L + R++ E+ KLL+ Sbjct: 215 TLRYREDPVRIIRAVRFAAKLSALGFAIDAKTAAPLRQSQALLADVPQSRMFDEMLKLLQ 274 Query: 215 AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA------EQVFEWKIDSLLRFIV 268 + + I + G+ + I+ + I + ++A +V + K + + Sbjct: 275 TGHAIATIEQLRKLGLTQGIYPLLDLIVQRADTAFVKAALLDTDRRVSQDKPVAPSFLLA 334 Query: 269 LISWQDKKS 277 + WQD + Sbjct: 335 CVLWQDVRD 343 >gi|91776611|ref|YP_546367.1| metal dependent phosphohydrolase [Methylobacillus flagellatus KT] gi|122399515|sp|Q1GZ11|CCA_METFK RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|91710598|gb|ABE50526.1| metal dependent phosphohydrolase [Methylobacillus flagellatus KT] Length = 411 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 74/355 (20%), Positives = 139/355 (39%), Gaps = 44/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ L V+D D + P+ ++++ + K P + T + Sbjct: 2 RIYTVGGAVRDRLLGLPVKDRDHVVVGSTPEAMVQLGYRPVGKDFPVFLHPVTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y D + D RRD TINA+ D+ G +ID G+ Sbjct: 57 ---EYALARTERKTGKGYKGFQVHADPEVTLEQDLARRDLTINAIAEDEHGNLIDPYHGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKIL 200 DL + ++ + A ED +RILR RF A + E ++ ++ L+ + + L Sbjct: 114 ADLHAKVLRHVSPA---FCEDPVRILRVARFAARFVEFSVADETMTLMRHMVEDGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ K L + P + G K + + LD+L V + + + +I Sbjct: 171 VPERVWQELAKGLMEQRPSRMFEVLRACGALKRLLPE-----LDRLFGVPQTAK-YHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS-----------FFNCNFNQKTLS 309 D+ + +++I + A + +R+ ++ + + S Sbjct: 225 DTGVHVMLVIDY---------AARAGFSLPVRFAALTHDLGKGTTPAHILPRHIGHEERS 275 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + ++ L L + +A H+ + VL + P Sbjct: 276 VELLQSLVKRLRVPNDCKDLALLVAKHHGKVHQVGEMKAATVLRFLQETDALRQP 330 >gi|261749258|ref|YP_003256943.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497350|gb|ACX83800.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 472 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 87/447 (19%), Positives = 163/447 (36%), Gaps = 60/447 (13%) Query: 12 DSDLINILSLLNKGEDK-SCIVGGAVRDSLMNLSV-QDIDIATTILPDRVMRIFSK--TR 67 ++ I+SL K + +VGG VRD L+ + +D+DI T R+ + SK Sbjct: 8 HRNIFRIISLSAKRIQQDCYVVGGYVRDFLLGKRIYEDLDILTIGEGIRLAKEVSKHINP 67 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 I +GT + + + R + ++ + D RRDFTINAL Sbjct: 68 TPRINIFKRFGTAMLEYKNHKIEFVGSRKESYHLYSRKPIIEIGSLQDDQKRRDFTINAL 127 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 G++ID GGL+DL +T++ ++ +D LR++R RF ID Sbjct: 128 AISLNERNYGELIDPFGGLSDLERKTLRTPLNSDVTYSDDPLRMMRAIRFATQLQFF-ID 186 Query: 184 SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL 243 + + + + I+S ERI E NK+L +K P + +Y G+ I ++ + Sbjct: 187 KSSFQSIQRNRNRINIVSMERIIEEFNKILLSKKPSIGLFLLYESGLLSIILPELTLLQG 246 Query: 244 DQLSQVIEAEQVFEWKIDS------------LLRFIVLISWQDKKSILSMA--------- 282 + + + F + LR++ L+ K Sbjct: 247 IEEKNGYKHKDNFYHTLQVVDNISQEESNSIWLRWVALLHDIGKAYTKKFLPKIGWSFHA 306 Query: 283 -------------KKFSLPREIRYFLI------SFFNCNFNQKTLSIPEIKKLFYLYGDK 323 ++ LP+ + S+ + I++ + G Sbjct: 307 HELVGSKMVPKIFQRLKLPKGEPMRYVKKMIQHSYKPVALIGDNTNDSAIRRFLFDMGKD 366 Query: 324 VMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP---------LFPLTGDDVV-KY 373 + +K+ +A + + + + KK P++G+D++ + Sbjct: 367 IE-DLIKLCIADITTKNVEKKNRYTNNLFLLLERIKKLEEKDRIQNWKSPISGNDIMNAF 425 Query: 374 GIPPGKKVGNILVHCKQEWINSSFQLS 400 I P KK+G I K+ + Sbjct: 426 HINPCKKIGVIKNFIKESILEGRISNE 452 >gi|228907268|ref|ZP_04071128.1| CCA-adding enzyme [Bacillus thuringiensis IBL 200] gi|228852408|gb|EEM97202.1| CCA-adding enzyme [Bacillus thuringiensis IBL 200] Length = 346 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 147/353 (41%), Gaps = 15/353 (4%) Query: 60 MRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDL-ITDGRYAK-VVFTRDWKADS 117 M IF + +P + +GT+ ++ + +++TT R++ D R V F R + D Sbjct: 1 MAIFPRN----VPVGLEHGTVIVLENGEPYEVTTFRTESEYEDFRRPSSVQFVRSLEEDL 56 Query: 118 LRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 RRDFT+NA+ ++G+++D G ++ R I +G+A R ED LR++R RF + Sbjct: 57 KRRDFTMNAIAMTEEGEMVDLFAGQEAIQQREIVTVGNAADRFQEDALRMMRGIRFVSAL 116 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 G ++++ A L+ ++ ERI E KLL + + + +F + Sbjct: 117 G-FSLETKTKQAIETYGHLLEHIAIERITVEFEKLLTGTYCVKGLKELVETKLFSHL-PY 174 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 +Q L+ FE I++ F+ I + L +++ + +++ Sbjct: 175 LQMSEERLLTATRYKWDSFETDIEAWAFFLYCIGEEHPSVFL---RQWKFSNKKIKDIVA 231 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 +K + L Y G + +++ A + + + + Sbjct: 232 VLLAIRTRKEKGWDTV--LLYKTGIHIAEMAERVYEA-MIESYDPTSVKRVQSMFHVLPI 288 Query: 358 WKKPLFPLTGDDVVKY-GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + +TG+D++ + PG V +L ++ + + +E + L+ Sbjct: 289 QGRQEMNVTGNDLLNWANKKPGPWVAEMLQKIEEAIVQGNVVNEKERIREWLQ 341 >gi|26987136|ref|NP_742561.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas putida KT2440] gi|73619823|sp|Q88QU2|CCA_PSEPK RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|24981767|gb|AAN66025.1|AE016231_8 tRNA nucleotidyltransferase, putative [Pseudomonas putida KT2440] Length = 368 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 139/369 (37%), Gaps = 33/369 (8%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V DID + + ++ + P + T + + Sbjct: 6 VGGAVRDRLLGRPVSDIDWLVVGATVEEMLANGYRPVGADFPVFLHPKTGE--------E 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D +RRD TINA+ D+ G V D G NDL Sbjct: 58 YALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKNDLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y G + D L+ I A L+ L++ Sbjct: 118 QRLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQALTA 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKI 260 ER W EI + L P + G +E+ ++ + S L L Q EQ Sbjct: 175 ERSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDGSRTLAALEQAAAHEQPLN--- 231 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK---TLSIPEIKKLF 317 +R+ L+ SI ++ ++ PRE + + C L + +L Sbjct: 232 ---VRWACLLRGLPPTSIKAVNQRLKAPRECQELAMLTGECLAQGNQALELPATALLELL 288 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 + + + FL + D + + +V+ G+ Sbjct: 289 QKFDVYRRPQRFEDFLTV-CEMAARGDGEQGYPQADYLRGAAAAARAVDVKPLVQAGLT- 346 Query: 378 GKKVGNILV 386 G+ +G L Sbjct: 347 GQALGEALK 355 >gi|307824886|ref|ZP_07655108.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] gi|307733933|gb|EFO04788.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] Length = 407 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 79/362 (21%), Positives = 146/362 (40%), Gaps = 53/362 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V++ D P+ ++R + K P + T + Sbjct: 2 EIYLVGGAVRDKLLELPVKERDWVVIGETPESMVRQGFRPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D +RRD TINA+ +G+++D GG Sbjct: 57 ---EYALARTERKTAPGYKGFTVHASPDVSLEQDLIRRDLTINAMAMTPEGQLVDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R + I A ED +RILR RF A YG ++ L+ S+ + Sbjct: 114 RDLEKRIFRHISPA---FAEDPVRILRIARFAARYGHLGFTLAEETRILMRSMVTAGEVD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W+E+ K L K+P + + +IF ++ + L V + E+ + Sbjct: 171 HLVPERVWAELFKALGEKSPSAFFYTLKDCAALDKIFPEI-----NGLFGVPQPEK-YHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ + A + S E+R+ + + K +S E Y Sbjct: 225 EIDTGIHVMLCL---------EQAARLSSSLEVRFAAL----VHDLGKGMSPKEHWPHHY 271 Query: 319 LYGD------KVMIAKLKI--------FLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + + M ++L++ + Y+ H+ ++D++ P Sbjct: 272 GHEAQGLPILECMCSRLRVPNSFKALALQVMQYHTHCHRAFELRASTITDMLAALGAFKP 331 Query: 365 LT 366 + Sbjct: 332 VN 333 >gi|255318403|ref|ZP_05359636.1| multifunctional CCA protein [Acinetobacter radioresistens SK82] gi|262378633|ref|ZP_06071790.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter radioresistens SH164] gi|255304395|gb|EET83579.1| multifunctional CCA protein [Acinetobacter radioresistens SK82] gi|262299918|gb|EEY87830.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter radioresistens SH164] Length = 415 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 76/412 (18%), Positives = 150/412 (36%), Gaps = 58/412 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ Q+ D + P++++ K P + T Sbjct: 2 QVYLVGGAVRDHLLGHPYQEKDYVVVGATPEQLLAQGFMPVGKDFPVFLHPDT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ D+QG+V D G Sbjct: 55 -KDEYALARTERKSGQGYHGFEFHTDSSVTLEEDLIRRDLTINAMAMDEQGQVYDPYQGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+N+ ++ + DA +ED LR+LR RF A Y ++ L+ + L Sbjct: 114 QDLKNKVLRHVSDA---FIEDPLRVLRVARFAARYAPYGFKIAEETMSLMQQLVNTGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L+ ER+W E ++ L + + G + ++ + + Q + Sbjct: 171 TLTPERVWKETSRALMEQRADVYFEVLRECGALNILLPELNALFGVPQRPEYHPEIDCGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ +Q + +RF VL+ K K + ++ + + Sbjct: 231 HTLMSLQQACQANYSLDVRFAVLVHDLGKALTPTDILPRHIMHEERGVKPVTAVCDRLKV 290 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P + ++ + TL + +L +++ F+ + + Sbjct: 291 PATTKQLALAVCKEHLKCHQALTLKPGTLWRLLQRLDVLRRPERVEAFVQACECDSRGRL 350 Query: 345 TCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 S + + + + D+ G +G +L+ + E I Sbjct: 351 GLENRPYPQASYMYQVIEIVRSIKAQDLPPE--IQGPDIGEMLIQRRIEAIA 400 >gi|325578139|ref|ZP_08148274.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325159875|gb|EGC72004.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 414 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 133/319 (41%), Gaps = 40/319 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V+D D + P+ ++ + K P ++ + Sbjct: 2 EIYLVGGAVRDQLLGLPVKDRDWVVVGATPEMLLSQGYQQVGKDFPVFLNP--------E 53 Query: 87 KYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + G + D +RRD TINA+ D+ GK+ D G+ Sbjct: 54 SHEEYALARTERKSGKGYTGFICDFSDEITLEQDLIRRDLTINAIAQDKDGKLHDPYHGV 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKA--KKGLK 198 D+ R ++ I A ED LR+LR RF A + +I + L + + L Sbjct: 114 EDIHQRILRHISPA---FAEDPLRVLRVARFAARFHHLGFSIAEETLKLMTELTEQGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L +P ++ G K +F ++ + + + Sbjct: 171 HLTAERVWMETEKALNEPHPEIYFETLHQVGALKVLFPEIAALD------GVPNPAKYHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +IDS + ++++ + + + + +L + F C+ K L+ E + Sbjct: 225 EIDSFIHTMLVL-----QQAVKLTENTNLNKSAVRF---AAICHDLGKALTPKENWPSHH 276 Query: 319 LYGD------KVMIAKLKI 331 + +++ +L++ Sbjct: 277 GHEKAGIKPTRLLCKRLRV 295 >gi|313496760|gb|ADR58126.1| Cca [Pseudomonas putida BIRD-1] Length = 368 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 138/369 (37%), Gaps = 33/369 (8%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ DID + + ++ + P + T + + Sbjct: 6 VGGAVRDRLLGRPFSDIDWLVVGATVEEMLAKGYRPVGADFPVFLHPKTGE--------E 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D +RRD TINA+ D+ G V D G NDL Sbjct: 58 YALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYQGKNDLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ I A L+ L++ Sbjct: 118 QRLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLALMRQISASGELQALTA 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEWKI 260 ER W EI + L P + G +E+ ++ + S L L Q EQ Sbjct: 175 ERSWKEIERALMEVQPQVFFKVLSACGALQELLPELDDGSRTLAALEQAAAHEQPLH--- 231 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK---TLSIPEIKKLF 317 +R+ L+ SI ++ ++ PRE + + C L + +L Sbjct: 232 ---VRWACLLRGLPPTSIKAVNQRLKAPRECQELAMLAGECLAQGNQALELPATALLELL 288 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPP 377 + + + FLA+ D + + +V+ G+ Sbjct: 289 QKFDVYRRPQRFEDFLAV-CEMAARGDGKQGYPQADYLRGAAAAARAVDVKPLVQAGLT- 346 Query: 378 GKKVGNILV 386 G+ +G L Sbjct: 347 GQALGEALK 355 >gi|325128353|gb|EGC51237.1| multifunctional CCA protein [Neisseria meningitidis N1568] Length = 417 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 140/347 (40%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFTARYRFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKF-SLPREIRYF-----LISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ +++ +L ++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPE 330 >gi|332968885|gb|EGK07932.1| poly(A) polymerase [Kingella kingae ATCC 23330] Length = 461 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 10/221 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L L++ ++ +VGGAVRD L+ + +D D+AT P++V R+F ++R Sbjct: 55 AEKVLRDLHQAGFEAYLVGGAVRDLLLGVEPKDFDVATNATPEQVYRLFKRSRV----IG 110 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + + ++ + +++T RS DGR + V + D+ RRDFT NALY D Sbjct: 111 RRFPIVHVMIGRDTIEVSTFRSGGKVKQNADGRIMQDVAYGTVEQDAHRRDFTCNALYYD 170 Query: 131 Q-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVA 189 + +V+D+ G+ND++ R + IGD R +ED +RILR R ++++ Sbjct: 171 IFRQEVLDFHQGVNDIQARRLVMIGDPKARYMEDPVRILRAIRLAGKL-SFEVEANTAAP 229 Query: 190 SIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 + L+ R++ E+ K+L + N + + GI Sbjct: 230 LAECVVLLRKEPVSRLFDELMKILFSGNASGCLQQFHVLGI 270 >gi|260913888|ref|ZP_05920362.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] gi|260631975|gb|EEX50152.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] Length = 426 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 147/356 (41%), Gaps = 40/356 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L++L V+D D + PD ++ + + P ++ T ++ Sbjct: 8 QVYLVGGAVRDQLLHLPVKDRDWVVVGATPDDLLAQGYQQVGREFPVFLNPKT-----KE 62 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R + G + + D LRRD TINA+ D +G + D+ GG+ DL Sbjct: 63 EYALARTERKAGSGYTGFICEFSPNITLQEDLLRRDLTINAIAQDVEGNLYDFYGGIEDL 122 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLKILS 201 R ++ + A +ED LR+LR RF A Y I + L+ + + L L+ Sbjct: 123 NQRILRHVSPA---FVEDPLRVLRVARFAARYHSLGFTIAPETLRLMKQLTKQGELAHLT 179 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP + G K +F +++ + + + +ID Sbjct: 180 AERVWLETEKALLEKNPEIYFHTLRQVGALKVLFPELEALI------GVPNPAKYHPEID 233 Query: 262 SLLRFIVLI-----------SWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSI 310 S + ++++ + ++ R + L ++ + + Sbjct: 234 SFIHTMLVLQQAVLLTENTNYHKSAVRFAAICHDLGKARTPKEIL----PHHYGHEKAGL 289 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ----DTCFILQVLSDIIHWKKPL 362 +KL + I + Y+ L H+ ++++ + + W+KP Sbjct: 290 EPTRKLCKRFKLPSTIQEFAELCC-EYHTLVHKAFELSPETVIKLFNRLDVWRKPR 344 >gi|307265132|ref|ZP_07546691.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter wiegelii Rt8.B1] gi|306919754|gb|EFN49969.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter wiegelii Rt8.B1] Length = 388 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 92/401 (22%), Positives = 163/401 (40%), Gaps = 37/401 (9%) Query: 10 FHDSDLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 ++ DLI +L ++ K + KS IVGG VRD L+ + DID+ I Sbjct: 5 INEIDLIKLLKEISLKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLK 64 Query: 69 KVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 I ++ T + DI + R + + + D RRDFTIN L Sbjct: 65 GDIVVYEAFRTATLSYDGISIDIISARKEYYERPAALPTIEFSNIYDDMARRDFTINTLA 124 Query: 129 AD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D + K++DY GL DL+ I+ + ++D RI R R+ Y I+ Sbjct: 125 YDVIEEKILDYFNGLEDLKKGLIRVLHP--KSFIDDPTRIFRAIRYATRY-SFEIEEKTH 181 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQ 245 ++ + +++LS++RI +EI +L+ I + GI K IF + + LD Sbjct: 182 NLMKESIENIRLLSADRIRNEIFLILKESKAQEMIDKLIYYGIDKVIFDGITLNTQHLDT 241 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNF 303 + +E E L RF+VL + +K I + K+ + + L + F Sbjct: 242 VYVNLEIE---------LYRFLVLFYYLKEKDINEIEKRLRINKIYLKALKDLVFLREQL 292 Query: 304 NQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLF 363 N + +I +I++ ++V+ A +++ + K Sbjct: 293 NCQNKNIRKIRETIEETKEEVLKA-IEVMEGEKAEKII------------------KGKL 333 Query: 364 PLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + G D+ G+PPG G ++ + + IN E++ Sbjct: 334 TVKGKDIENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374 >gi|197118675|ref|YP_002139102.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter bemidjiensis Bem] gi|197088035|gb|ACH39306.1| adenosine-specific tRNA nucleotidyltransferase [Geobacter bemidjiensis Bem] Length = 875 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 77/414 (18%), Positives = 159/414 (38%), Gaps = 22/414 (5%) Query: 18 ILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 IL L + D+ VGG VRD L+++ DID+ F+ + + Sbjct: 462 ILHDLGRVGDQLDLTVYAVGGFVRDLLLDIQNMDIDVTVDGDGILFAETFASQFGCRVKS 521 Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--- 129 +GT I+ D+ + R + V K D RRDFT+N L Sbjct: 522 HQKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTVNTLAIALN 581 Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGL 187 D GK+IDY G DL++R I+ + + +ED R+ R RF K ++ L Sbjct: 582 GDSFGKLIDYFGAYRDLQSRVIRVLHN--LSFVEDPTRVFRAIRFEQRLNFKIAKHTEDL 639 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-----EIS 242 + + + L+ L R+ +E+ ++L K PL + M + G+ + I V+ +++ Sbjct: 640 IKNAVKMEFLEKLGGRRLLAELVQILREKEPLKGVGRMASLGLLRFIHPGVELTPAMQVA 699 Query: 243 LDQLSQVIEAEQVFEWKIDSL---LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 L++ V+ + + + F+ L ++ + ++ + L+ Sbjct: 700 LEETRYVVSWFDLLYLERPYESWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMR 759 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKV-MIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHW 358 + ++ + + ++ + L Y+ + + Sbjct: 760 RQSEELIGNLERKLARSEKVDNSEIYFTLRGLPVEVLLYHMAKSRSAEVKRCISLYFTKL 819 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + G+D+ + G+ PG +L +N ++++ L+R+++ Sbjct: 820 DGMHPQIGGEDLKELGVEPGPLYRELLDLVLSARLNGKVASREDEI-QLVREVL 872 >gi|240949655|ref|ZP_04753990.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus minor NM305] gi|240295913|gb|EER46589.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus minor NM305] Length = 414 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 146/363 (40%), Gaps = 54/363 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V+D D P++++ + + P + T + Sbjct: 2 QIYLVGGAVRDQLLGLPVKDRDFLVVGSTPEQLLSLGYQQVGADFPVFLHPQTKE----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R + +G + D +RRD TINA+ D G++ D GG Sbjct: 57 ---EYALARQERKHGNGYNGFICDFSPAVTLEQDLIRRDLTINAMAQDPTSGQIFDPFGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL NR ++ + A ED LR+LR RF A + ++ L+ + L Sbjct: 114 KQDLENRLLRHVSPA---FEEDPLRVLRVARFAARFYSFGFRIAKETKRLMRKMAEDGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L++ER+W E K + +P ++ G +F + +++L + Q + Sbjct: 171 NHLTAERVWLETEKAFQTDSPHIYFAVLHEVGALAVLFPE-----MEKLFGKPQPAQ-YH 224 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 +ID + +++I + +AKK P + + + C+ K L+ +I Sbjct: 225 PEIDCGIHTLMVI-----EQAKQLAKKAENPTALLWAAL----CHDLGKGLTPDDILPHH 275 Query: 318 YLYG------DKVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWK 359 Y + + + +LK+ + H + + +L++ + + W+ Sbjct: 276 YGHEMKGITPARELSNRLKVPSEVKDFALLVTQYHTHCHKMAELRPETVLKLFNALDVWR 335 Query: 360 KPL 362 KP Sbjct: 336 KPQ 338 >gi|21232836|ref|NP_638753.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767093|ref|YP_241855.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. campestris str. 8004] gi|188990185|ref|YP_001902195.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. campestris str. B100] gi|73619905|sp|Q8P5D4|CCA_XANCP RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|81306923|sp|Q4UYN8|CCA_XANC8 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702093|sp|B0RNU6|CCA_XANCB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|21114662|gb|AAM42677.1| tRNA nucleotidyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572425|gb|AAY47835.1| tRNA nucleotidyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167731945|emb|CAP50131.1| multifunctional CCA protein [Xanthomonas campestris pv. campestris] Length = 410 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 80/411 (19%), Positives = 154/411 (37%), Gaps = 75/411 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ D D + ++ + K K P + + Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVGADQAQMQALGYKPVGKDFPVFLHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G+V D GG Sbjct: 54 SGEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEASGEVFDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + DL+ R ++ +G A +ED +R+LR RF A ++ L+ + L Sbjct: 114 VRDLQQRVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFGIAPETAALMREMADSGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L ER+W E+ ++L + P + +++ G + I + LD L V + + F Sbjct: 171 DSLVPERVWQELRRVLGSAQPSAFLRTLHDTGALRAILPE-----LDALYGVPQRAE-FH 224 Query: 258 WKIDSLLR-------------------FIVLISWQDK-------------------KSIL 279 ++D+ + F L K + Sbjct: 225 PEVDTGVHQEMVSDMAARLAPGDALVGFAALTHDLGKALTPPEQWPRHVMHEQRGVAPLQ 284 Query: 280 SMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKI-F 332 ++ ++ +P++ R ++ + N + ++ E+ + IA+L + Sbjct: 285 ALCERLKVPQDYRQLAVTACREHLNVHRLPELRDRTVHELLVRCDGFRRPERIAQLALVC 344 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGN 383 A L ++ + ++ + D+ G+ G ++G Sbjct: 345 EADKRGRLGSEEAAYPQG--PELQRVHAAALAINARDLAADGLQ-GPQIGE 392 >gi|170723965|ref|YP_001751653.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas putida W619] gi|226702076|sp|B1JDY1|CCA_PSEPW RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|169761968|gb|ACA75284.1| Polynucleotide adenylyltransferase region [Pseudomonas putida W619] Length = 370 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 81/372 (21%), Positives = 143/372 (38%), Gaps = 30/372 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ V DID + + + + P + T + Sbjct: 2 QIYKVGGAVRDRLLGRPVSDIDWLVVGASVEEMHAKGFRPVGADFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F + D +RRD TINA+ D QG V+D G Sbjct: 57 ---EYALARTERKSGRGYGGFTFHASPEVTLEEDLIRRDLTINAMAEDDQGNVLDPFHGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y ++ L+ I A L+ Sbjct: 114 ADLEQRLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLELMKQIAASGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER W EI + L P I + + K++ +++ + + AE Sbjct: 171 ALTAERSWKEIERALMEDEPQVFINVLSDCAALKQLMPELEGDAAALAALTQAAEHHQPL 230 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK---TLSIPEIKK 315 I R+ L+ SI ++ ++F PRE + + C N L ++ Sbjct: 231 HI----RWACLLHNLKPASIKALNQRFKAPRECQELAMLVGECASNGHRALQLEPEDMLA 286 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L + + + F+++ + + + + + +V+ G+ Sbjct: 287 LLQKFDVYRRPQRFEDFISV--CQMVARGSGQAYPQADYLRAAAAAARAVEAKPLVEAGL 344 Query: 376 PPGKKVGNILVH 387 G+ +G L H Sbjct: 345 T-GQALGEALRH 355 >gi|167037540|ref|YP_001665118.1| polynucleotide adenylyltransferase region [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115955|ref|YP_004186114.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856374|gb|ABY94782.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929046|gb|ADV79731.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 388 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 88/397 (22%), Positives = 161/397 (40%), Gaps = 37/397 (9%) Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 DLI +L ++ K + KS IVGG VRD L+ + DID+ + I Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIKFAYTLLSYLKGDIV 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 ++ T + D+ + R + + + D RRDFTIN L D Sbjct: 69 VYEAFRTATLSYDGFSIDVISARKEYYERSAALPTIEFSNIYDDMARRDFTINTLAYDVI 128 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 +GK++DY GL DL+ ++ + ++D RI R R+ Y I+ Sbjct: 129 EGKILDYFNGLEDLKKGLVRVLH--SKSFIDDPTRIFRAIRYATRYA-FEIEKKTHNLMK 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQV 249 ++ + +++LS++RI +EI +L+ I + GI K IF + +LD++ Sbjct: 186 ESIENIRLLSADRIRNEIFLILKEIKAKEMIDKFISYGIDKVIFDGITLNTRNLDRVDAN 245 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKT 307 +E E L RF+VL + + I + K+ + + L + F N + Sbjct: 246 LEVE---------LYRFLVLFYYLKESDINKIEKRLRVNKIYLKALKDLVFLREQLNCQN 296 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 +I +I++ ++V+ A +++ + K + G Sbjct: 297 KNIRKIRETIEETKEEVLRA-IEVMEGEKAEKII------------------KGKLTVKG 337 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 D+ G+PP G ++ + + IN E++ Sbjct: 338 KDIKNLGLPPSPLYGELMDNVFEAKINGIIATRDEEI 374 >gi|95928272|ref|ZP_01311020.1| poly(A) polymerase [Desulfuromonas acetoxidans DSM 684] gi|95135543|gb|EAT17194.1| poly(A) polymerase [Desulfuromonas acetoxidans DSM 684] Length = 419 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 16/236 (6%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D + + +L L + + +VGG+VRD L+ +D D+ T P++V ++F R Sbjct: 21 DENSLKVLYRLRQHGYTAYLVGGSVRDLLLGRKPKDFDVGTDATPEQVRKLFRNCRL--- 77 Query: 72 PTSISYGTIKIICRKK-YFDITTLRS--------DLITDG-RYAKVVFTRDWKADSLRRD 121 + I+ + ++ T R D DG + + D+ RRD Sbjct: 78 -IGRRFRLAHIMFGRHCLIEVATFRRKPDPDEIPDAEEDGPNHFAENVFGTPEEDAFRRD 136 Query: 122 FTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINAL+ D + ++DYVGGL DL + I+ IGD R ED +R+LR F A + Sbjct: 137 FTINALFYDIENYSIVDYVGGLQDLHDGIIRVIGDPDERFHEDPVRMLRALEFSARL-DF 195 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 ++ + A + + L S RI EI +L K + G+ + Sbjct: 196 ELEQSIIPAMDRCGELLLTASPARIREEIMELFRHKVAGQVLQKADRYGLLSYLVP 251 >gi|91774955|ref|YP_544711.1| poly(A) polymerase [Methylobacillus flagellatus KT] gi|91708942|gb|ABE48870.1| poly(A) polymerase [Methylobacillus flagellatus KT] Length = 452 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 16/233 (6%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + + ++ I L K ++ IVGGAVRD L+ +D D+AT P++V RIF Sbjct: 38 IDRRLISNA-AIKTTDALQKAGFEAFIVGGAVRDLLLKKRPKDFDVATDATPEQVHRIFR 96 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITD---------GRYAKVVFTRDWKA 115 ++R + + ++ + +++T R + + GR + + Sbjct: 97 RSRI----IGRRFRLVHVMFGDETIEVSTFRGSHLAEAGDAKVTDSGRILRDNVFGSQEE 152 Query: 116 DSLRRDFTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 D+ RRDFT NALY D +V+D+ G+ DL+ ++ IGD R ED +R+LR R Sbjct: 153 DAARRDFTANALYYDPSTEEVLDFHRGVADLQAGVLRMIGDPVTRYREDPVRMLRAVRLS 212 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYN 227 A G K + + ++ + L + R++ E+ KL + + + + + Sbjct: 213 AKLGLK-LAPETERPILELAELLHDVPPSRLFDEMLKLFLSGHAIESANALRQ 264 >gi|329904551|ref|ZP_08273857.1| tRNA nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327547911|gb|EGF32661.1| tRNA nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 384 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 136/380 (35%), Gaps = 28/380 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD+L+ L V+D D + P+ ++ + K P + T + Sbjct: 2 QIYTVGGAVRDALLGLPVKDRDYVVVGATPEAMVALGYTPVGKDFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y VF + D RRD TINA+ G ++D GG Sbjct: 57 ---EYALARTERKTAPGYRGFVFHAAGDVTLEQDLARRDLTINAIAQAGDGALVDPYGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL + + + A ED +RILR RF A + ++ + L+ ++ A + L Sbjct: 114 ADLAAKLFRHVSAA---FAEDPVRILRVARFAARFTGFSVAPETNLLMQTMVASGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQVIEAEQVFEW 258 ER+W E+ + L + P I + + G + ++ L L Q Sbjct: 171 VPERVWQELARGLMEQQPSRMIDVLRDCGALARLLPELDAAGPLLPLLDQAAAQGLALPL 230 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI---SFFNCNFNQKTLSIPEIKK 315 ++ LL + + ++A +P + R + ++ + LS I Sbjct: 231 RVAVLLHDPAGDPTSRSQRVDAIASLLKMPADCRDLAVMVTRDYHAVVDAPGLSAEAIVG 290 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGI 375 L + + + D F V P ++ G+ Sbjct: 291 LIERSDGLRKPQRFADMVTAVRCLVAGSDDDFPQAVFLAEALKAARGVPAG---MIAAGL 347 Query: 376 PPGKKVGNILVHCKQEWINS 395 + I + +++ Sbjct: 348 GAQPQ--AIAQAVRAARVDA 365 >gi|260771264|ref|ZP_05880191.1| tRNA nucleotidyltransferase [Vibrio furnissii CIP 102972] gi|260613861|gb|EEX39053.1| tRNA nucleotidyltransferase [Vibrio furnissii CIP 102972] Length = 405 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 147/347 (42%), Gaps = 27/347 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L + D D + PD +++ + K P + T R+ Sbjct: 3 QIYLVGGAVRDQLLQLPIYDKDWVVVGSSPDAMLQAGFQAVGKDFPVFLHPKT-----RE 57 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + G +AD RRD TINA+ DQ G +ID GG DL Sbjct: 58 EHALARTERKTGAGYTGFACHFAPDVTLEADLQRRDLTINAMAQDQDGTLIDPYGGQRDL 117 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +R ++ + +A +ED LR+LR RF A ++ L+ I A L L+ Sbjct: 118 HDRVLRHVSEA---FVEDPLRVLRVARFAAKLAHLGFSVADETLALMQRISASGELAHLT 174 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E +K L ++P + + + G + + + LD+L V + E+ + +ID Sbjct: 175 PERVWQEWHKSLSTQSPHIFLQVLRDCGALQIVLPE-----LDRLFGVPQPEK-WHPEID 228 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ ++ Q S+ +F+ ++ + + K +K + L Sbjct: 229 TGVHTLM-VAEQAALLSESLTVRFAAQVHDLGKGVTPASEWPSHKLHCHTGLKIIEALCA 287 Query: 322 DKVMIAKLKIFLALHY------NNLTHQDTCFILQVLSDIIHWKKPL 362 + + + + L+VL+ + W+KP Sbjct: 288 RVKVPNEFRDLALAVCAQHSNVHRAAELKPATKLKVLNQLDVWRKPQ 334 >gi|294339615|emb|CAZ87974.1| putative Poly(A) polymerase, PcnB [Thiomonas sp. 3As] Length = 478 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 32/241 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + N + L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 NARNTVQTLQQAGFEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKPLFKRA----FII 98 Query: 74 SISYGTIKIICRKKYFDITTLRS--------------------------DLITDGRYAKV 107 + + ++ + +++T R+ + + GR + Sbjct: 99 GRRFRIVHVMYGRDIIEVSTYRALHDAQAAESVDGNERTSRRALADKTLAVDSSGRVLRD 158 Query: 108 VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 D+ RRDFTINALY D + V+DY G+ DL+ R ++ IGD R ED +R Sbjct: 159 NVWGTLDDDAERRDFTINALYYDPIRDVVVDYHRGMKDLKERRLRMIGDPAARYREDPVR 218 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A G +ID L + L + + R++ E KLL+ + + ++ + Sbjct: 219 MLRIARFAAKLG-FDIDPATLAPIGPSADLLANVPAARLFDETIKLLQTGHAVASLQQLR 277 Query: 227 N 227 Sbjct: 278 R 278 >gi|254253161|ref|ZP_04946479.1| Poly(A) polymerase [Burkholderia dolosa AUO158] gi|124895770|gb|EAY69650.1| Poly(A) polymerase [Burkholderia dolosa AUO158] Length = 578 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 33/246 (13%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 125 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 183 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD-----G 102 + + + ++ +++T R+ D T G Sbjct: 184 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPAAADAEPPRRLKRDELDRRTHAVDASG 240 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 241 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRFR 300 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A G I+ + + + R++ E+ KLL + + L Sbjct: 301 EDPVRMLRVVRFAAKLG-FEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHALAC 359 Query: 222 IVHMYN 227 + + Sbjct: 360 LQRLRK 365 >gi|315179129|gb|ADT86043.1| tRNA nucleotidyltransferase [Vibrio furnissii NCTC 11218] Length = 404 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 147/347 (42%), Gaps = 27/347 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + PD +++ + K P + T R+ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDKDWVVVGSSPDAMLQAGFQAVGKDFPVFLHPKT-----RE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + G +AD RRD TINA+ DQ G +ID GG DL Sbjct: 57 EHALARTERKTGAGYTGFACHFAPDVTLEADLQRRDLTINAMAQDQDGTLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 +R ++ + +A +ED LR+LR RF A ++ L+ I A L L+ Sbjct: 117 HDRVLRHVSEA---FVEDPLRVLRVARFAAKLAHLGFSVADETLALMQRISASGELAHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W E +K L ++P + + + G + + + LD+L V + E+ + +ID Sbjct: 174 PERVWQEWHKSLSTQSPHIFLQVLRDCGALQIVLPE-----LDRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ ++ Q S+ +F+ ++ + + K +K + L Sbjct: 228 TGVHTLM-VAEQAALLSESLTVRFAAQVHDLGKGVTPASEWPSHKLHCHTGLKIIEALCA 286 Query: 322 DKVMIAKLKIFLALHY------NNLTHQDTCFILQVLSDIIHWKKPL 362 + + + + L+VL+ + W+KP Sbjct: 287 RVKVPNEFRDLALAVCAQHSNVHRAAELKPATKLKVLNQLDVWRKPQ 333 >gi|296135509|ref|YP_003642751.1| poly(A) polymerase [Thiomonas intermedia K12] gi|295795631|gb|ADG30421.1| poly(A) polymerase [Thiomonas intermedia K12] Length = 478 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 32/241 (13%) Query: 14 DLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 + N + L + ++ IVGGAVRD L+ L +D D+AT P++V +F + Sbjct: 43 NARNTVQTLQQAGFEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKPLFKRA----FII 98 Query: 74 SISYGTIKIICRKKYFDITTLRS--------------------------DLITDGRYAKV 107 + + ++ + +++T R+ + + GR + Sbjct: 99 GRRFRIVHVMYGRDIIEVSTYRALHDAQAAESVDGNERTSRRALADKTLAVDSSGRVLRD 158 Query: 108 VFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLR 166 D+ RRDFTINALY D + V+DY G+ DL+ R ++ IGD R ED +R Sbjct: 159 NVWGTLDDDAERRDFTINALYYDPIRDVVVDYHRGMKDLKERRLRMIGDPAARYREDPVR 218 Query: 167 ILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMY 226 +LR RF A G +ID L + L + + R++ E KLL+ + + ++ + Sbjct: 219 MLRIARFAAKLG-FDIDPATLAPIGPSADLLANVPAARLFDETIKLLQTGHAVASLQQLR 277 Query: 227 N 227 Sbjct: 278 R 278 >gi|21673818|ref|NP_661883.1| polyA polymerase family protein [Chlorobium tepidum TLS] gi|21646950|gb|AAM72225.1| polyA polymerase family protein [Chlorobium tepidum TLS] Length = 475 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 86/457 (18%), Positives = 161/457 (35%), Gaps = 58/457 (12%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTRYKVIPTSI 75 I L ++ IVGG VRD +M DIDI P + K + Sbjct: 15 RIGDLADETGLPCYIVGGYVRDLIMQRPCTDIDIMVIGEPVPFAHALAEKLGGRNFVLFE 74 Query: 76 SYGTIKIICRK-----KYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 + T ++ +I R + + + D RRDFTINAL Sbjct: 75 RFRTAQLELDDPKAGTFKLEIVGARKESYNPESRKPITSIGTLEDDLSRRDFTINALALR 134 Query: 131 ----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 ++G+V+D G +R + +K D +D LR++R RF + +D Sbjct: 135 LNRKERGEVVDLFDGQRHIREKLLKTPLDPEQTFSDDPLRMMRAARFACQL-DFQLDEAT 193 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ 245 L A ++I+S ER+ E K++EA+ P + +Y+ G+ KEI ++ + ++Q Sbjct: 194 LTAMSTMSSRIQIVSRERVSHEFFKIMEARKPSIGLKILYSTGLLKEIIPELTVMAGIEQ 253 Query: 246 LSQVIEAEQVFE----------WKIDSLLRFIVLISWQDK-------------------- 275 + + + +F LR L K Sbjct: 254 VDGLGHKDTLFHTFQVVDNLAEHSDKLWLRVSALFHDIAKPVTKRFHPGSGWTFHGHEAV 313 Query: 276 --KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFL 333 K + + + P E ++ + LS EI L + Sbjct: 314 GVKIVARIFRAMKWPLEPMEYVQKMVRLHHRPIPLSKEEITDSAVRRLMFDAGPDLDDLM 373 Query: 334 ALHYNNLTHQDTCFILQVLS-------------DIIHWKKPLFPLTGDDVVK-YGIPPGK 379 L ++T ++ + +++ + K P++G D+++ +P G+ Sbjct: 374 TLCRADVTSKNPRKVQRIMKNFSNVEAKIAEVGEKDLLAKWRPPVSGTDIMELLNLPQGR 433 Query: 380 KVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 VG I + I+ ++ ++++ Q Sbjct: 434 TVGIIKSRMENAIIDGDIPYDRQAALDYIQQVYREMQ 470 >gi|56461066|ref|YP_156347.1| tRNA nucleotidyltransferase [Idiomarina loihiensis L2TR] gi|73619780|sp|Q5QY23|CCA_IDILO RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|56180076|gb|AAV82798.1| tRNA nucleotidyltransferase [Idiomarina loihiensis L2TR] Length = 370 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 71/381 (18%), Positives = 144/381 (37%), Gaps = 30/381 (7%) Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGGAVRD L+ L V + D + + +++ K P + T + Sbjct: 3 VYLVGGAVRDKLLKLPVHERDWVVVGARAEDLLKQGFLQVGKDFPVFLHPSTRE------ 56 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + R++ + + + D RRD TINA+ + G+++D G+ Sbjct: 57 --EYALARTERKSGKGHTSFDVFASPDVTLEDDLARRDLTINAIAQSEDGEIVDPYNGVQ 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 D++ R ++ + +A ED LR+LR RF A + + ++ ++ + A + L Sbjct: 115 DIKARKLRHVSEA---FTEDPLRVLRVARFAARFAHLDFTVAEETQQMLQEMSASQELSH 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L ER+W E K L + P + + + ++ + SQ+ ++ + Sbjct: 172 LVPERVWREWEKSLLTQTPTVFLTLLRDIQALSQVLPGITADD----SQLQRLQRTSAYS 227 Query: 260 IDSLLRFIVL-ISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 LRF L I + +S+ ++ ++P R + N T +PE +L Sbjct: 228 DSVTLRFASLFIEQETPESLKQFCRQLAIPNHYRDSALLARNHEDFITTPELPEKAQLAA 287 Query: 319 LYGD----KVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYG 374 L + ++ + I + + L + + G Sbjct: 288 LLKQIDYWRRPEKLEQLLQLRQAEYSESKQQKSIAAQHKKLRSGAEKAAALNAGTLQQQG 347 Query: 375 IPPGKKVGNILVHCKQEWINS 395 GK +G+ L +++ + Sbjct: 348 FT-GKALGDALREQREQILAE 367 >gi|312200959|ref|YP_004021020.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EuI1c] gi|311232295|gb|ADP85150.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Frankia sp. EuI1c] Length = 517 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 172/481 (35%), Gaps = 92/481 (19%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMN-----LS------------------------- 44 + + +VGG+VRD+L+ Sbjct: 27 ADELGRIFAAHGHTLHLVGGSVRDALLGDLAQARPASSARPAATTPAKPAATTPAKPAGE 86 Query: 45 VQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDG-R 103 D+D T P+RV+ + I++GT+ + ++TT R++ G R Sbjct: 87 PPDLDFTTDARPERVLEMTRGWAEATWEAGIAFGTVGLARAGTRLEVTTYRAESYDRGSR 146 Query: 104 YAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILE 162 V + +AD LRRDFT+NA+ + +D GG+ DL ++ G + + Sbjct: 147 NPTVSYGDSLEADLLRRDFTVNAMAVSVPDHEFVDLFGGMADLARGVLRTPGPPEVSLDD 206 Query: 163 DYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAI 222 D LRILR RF A G + + A L+I++ ER+ E+ KL+ + +P + Sbjct: 207 DPLRILRAIRFEAKLG-LTPTPELVEAMRARVDRLRIVAPERVRDELRKLIVSADPDRGL 265 Query: 223 VHMYNGGIFKEIFLDVQEISLD-------------QLSQVIEAEQVFEWKIDSLLRFIVL 269 + + G + ++ + ++ L+ + +A ++ + D +LR+ L Sbjct: 266 QRLVDVGAAAVVLPELPALRMEIDEHHQHKDVYTHTLTVLRQAIELEDDGPDEVLRWAAL 325 Query: 270 ISWQDKKS----------------------ILSMAKKFSLPREIRY--FLISFFNCNFNQ 305 + K P+++ L+ F + F+ Sbjct: 326 LHDIGKPRTRRHAAGGGVSFHHHEVVGRDMTRKRLAALRFPKDVGDSITLLVFLHLRFHG 385 Query: 306 ---KTLSIPEIKKLFYLYGDKVMI-------------AKLKIFLALHYNNLTHQDTCFIL 349 + +++ + G ++ + LA HY++L + + Sbjct: 386 YGTGEWTDAAVRRYVHDAGPQLERLHKLVRSDCTTRNKRKAAMLARHYDSLEER-----I 440 Query: 350 QVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 L+ L+GDD+++ G+ P + VG H + + LL Sbjct: 441 AALAAQEEISAIRPELSGDDIMEVLGLRPSRLVGEARQHMLDFRFDMGLVGRDAAVAELL 500 Query: 409 R 409 R Sbjct: 501 R 501 >gi|322514670|ref|ZP_08067698.1| multifunctional CCA protein [Actinobacillus ureae ATCC 25976] gi|322119368|gb|EFX91477.1| multifunctional CCA protein [Actinobacillus ureae ATCC 25976] Length = 424 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 85/362 (23%), Positives = 146/362 (40%), Gaps = 53/362 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+NL V+D D + P++++ + P + T + Sbjct: 2 QIYLVGGAVRDQLLNLPVKDRDYLVVGATPEQLLAQGYQQVGNDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R + +G + D +RRD TINA+ D G++ D GG Sbjct: 57 ---EYALARQERKNGVGYNGFLCDFSPDVTLEQDLIRRDLTINAIAQDASGQIFDPYGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKN-IDSDGLVASIKAKKGLK 198 DL N ++ I A ED LR+LR RF A + G K ++ L+ + A L Sbjct: 114 QDLANHLLRHISPA---FSEDPLRVLRVARFSARFHSLGFKIAPETVKLMQEMTACGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K NP + G +F + LD+L V + Q Sbjct: 171 HLTAERVWLETQKAFATDNPQIYFEVLREIGALSVLFPE-----LDRLFGVPQPPQ-HHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +IDS + ++ ++ AK+ + + L+ C+ K L+ EI Y Sbjct: 225 EIDSGIHSLL---------VIEQAKRLAKNAKNPTALLWAAFCHDLGKGLTEKEILPHHY 275 Query: 319 LYG------DKVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWKK 360 + + + +LK+ + H + + +L+V + + W+K Sbjct: 276 GHEVKGIKPARELSNRLKVPTDVKDFAILVTEYHTHCHKMAELRPETVLKVFNALDVWRK 335 Query: 361 PL 362 P Sbjct: 336 PQ 337 >gi|156973178|ref|YP_001444085.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio harveyi ATCC BAA-1116] gi|166233890|sp|A7MWN9|CCA_VIBHB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|156524772|gb|ABU69858.1| hypothetical protein VIBHAR_00858 [Vibrio harveyi ATCC BAA-1116] Length = 406 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 73/358 (20%), Positives = 134/358 (37%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + + D D + P+ ++ K P + T + Sbjct: 2 QVYLVGGAVRDHLLGIDIYDRDWVVVGATPEIMLSQGYTAVGKDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ D+ G + D GG Sbjct: 57 ---EHALARTERKSGAGYTGFECFFDQSVTLEEDLIRRDLTINAMAMDEDGNLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ + ++ + A +ED LR+LR RF A ++ L+ + L Sbjct: 114 KDIDAKVLRHVSQA---FVEDPLRVLRVARFAAKLAHLGFSVAEETMQLMRDMAESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + + G + ++ D L V + E+ + Sbjct: 171 TLTPERVWQEWHKSLSTSRPDVFLSVLRDCGALAVVLPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A K S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAQQAAKLSDSLPVRFAAQVHDLGKGVTPESEWPSHKMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 KL D+V + LAL + I+++L+ W+K Sbjct: 276 TGLKLIKKLCDRVRVPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKAE 333 >gi|145627734|ref|ZP_01783535.1| hypothetical protein CGSHi22121_01815 [Haemophilus influenzae 22.1-21] gi|145639916|ref|ZP_01795516.1| hypothetical protein CGSHiII_00562 [Haemophilus influenzae PittII] gi|144979509|gb|EDJ89168.1| hypothetical protein CGSHi22121_01815 [Haemophilus influenzae 22.1-21] gi|145271007|gb|EDK10924.1| hypothetical protein CGSHiII_00562 [Haemophilus influenzae PittII] gi|309751094|gb|ADO81078.1| tRNA nucleotidyltransferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Haemophilus influenzae R2866] Length = 416 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 137/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGADPATLLSLGYLQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALYGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|325204225|gb|ADY99678.1| multifunctional CCA protein [Neisseria meningitidis M01-240355] Length = 417 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 30/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L V+D D + ++ + K P + T + Sbjct: 2 QTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F D + D +RRD TINA+ D GK+ID GG Sbjct: 57 ---EYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDADGKIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD-GLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A Y + + L+ + L Sbjct: 114 RDLAAGILRHVSPA---FAEDPVRILRTARFTARYRFEIAEETIKLMRQMVENGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP I + G K + +V + + + +ID Sbjct: 171 AERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALF------GVPQRADYHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIR------YFLISFFNCNFNQKTLSIPEIKK 315 S + ++ + LS+ ++++ ++ + + + E+ + Sbjct: 225 SGIHTLMTLQRAADMG-LSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVEPVREVNQ 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +A+L + ++ + + IL VL +++P Sbjct: 284 RLRAPKHCAELAELVCRWHIIFHQVGQLKSRTILNVLKKTDAFRRPE 330 >gi|253998183|ref|YP_003050246.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus sp. SIP3-4] gi|253984862|gb|ACT49719.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus sp. SIP3-4] Length = 407 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 137/355 (38%), Gaps = 26/355 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L VQD D + P + + K P + T + Sbjct: 2 QTFVVGGAVRDALLGLPVQDQDHVVVGSTPAEMEAAGFRRVGKDFPVFLHPDTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D RRD TINA+ + G +ID G Sbjct: 57 ---EYALARTERKTAKGYKGFEVHASPDVTLEEDLARRDLTINAIARAEDGSLIDPYHGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL R ++ + A ED +RILR RF A + E + + L+ + A + L Sbjct: 114 ADLEARILRHVSPA---FAEDPVRILRAARFAARFTEFTLAPETLALMQQMVADGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ K L P + G + IF + LD+L V + Q +I Sbjct: 171 VPERVWQELAKGLMEAKPSRMFEMLRACGALQRIFPE-----LDRLWGVPQPAQ-HHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI--SFFNCNFNQKTLSIPEIKKLFY 318 D+ + +++I + + + +L ++ + + + S+ +K + Sbjct: 225 DTGVHVMMVIDYAASQGYSLPVRFAALTHDLGKGTTPPDIWPRHIGHELRSVDLLKDVVK 284 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +L +A + + + +L + P DD +K Sbjct: 285 RLRVPNDCRELAQLVARFHGKVHQVNAMRPDTLLHFLQELDALRQPTRFDDFLKA 339 >gi|329298667|ref|ZP_08256003.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Plautia stali symbiont] Length = 410 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 148/361 (40%), Gaps = 57/361 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+ L V+D D + PD ++ + + P + + + Sbjct: 2 KTFLVGGAVRDALLRLPVKDRDWVVVGATPDSMLAQGYQQVGRDFPVFLHPESRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V F D + D RRD TINA+ G +ID G Sbjct: 57 ---EYALARTERKSGNGYTGFVTQFAPDVTLEQDLQRRDLTINAIAQAADGTLIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+ RT++ + A ED LR+LR RF A + N ++ L+ + L Sbjct: 114 QDLQQRTLRHVSAA---FNEDPLRVLRVARFAARFAHLNFRVAPETQALMREMAHSGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L +NP + + + +F ++ + I A + Sbjct: 171 HLTAERVWKETEKALLTRNPQVYFQQLRDCDALQVLFPEIDNLY------GIPAPVKWHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ L+M S ++R+ + + K L+ E + Sbjct: 225 EIDTGVHALM---------TLTMVAALSDQLDVRFATLF----HDVGKALTPTEKWPSHH 271 Query: 319 LYGD------KVMIAKLKI-----FLAL-------HYNNLTHQDTCFILQVLSDIIHWKK 360 +G + + +L++ LAL + + Q ++ + I W+K Sbjct: 272 GHGPAGVPIVEALCQRLRVQNQVRDLALVVTEFHDVVHTIERQPADALVALFDRIDAWRK 331 Query: 361 P 361 P Sbjct: 332 P 332 >gi|167040202|ref|YP_001663187.1| polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X514] gi|300914286|ref|ZP_07131602.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X561] gi|307724478|ref|YP_003904229.1| polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X513] gi|166854442|gb|ABY92851.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X514] gi|300889221|gb|EFK84367.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X561] gi|307581539|gb|ADN54938.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter sp. X513] Length = 388 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 88/397 (22%), Positives = 160/397 (40%), Gaps = 37/397 (9%) Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 DLI +L ++ K + KS IVGG VRD L+ + DID+ + I Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIKFAYTLLSYLKGDIV 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 ++ T + D+ + R + + + D RRDFTIN L D Sbjct: 69 VYEAFRTATLSYDSISIDVISARKEYYERPAALPTIEFSNIYDDMARRDFTINTLAYDVI 128 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + K++DY GL DL+ I+ + ++D RI R R+ Y I+ Sbjct: 129 EEKILDYFNGLEDLKKGFIRVLHP--KSFIDDPTRIFRAIRYATRY-SFEIEEKTHNLMK 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEISLDQLSQV 249 ++ + +++LS++RI +EI +L+ I + + GI K IF + +LD + Sbjct: 186 ESIENIRLLSADRIRNEIFLILKESKVKEMIEKLISYGIDKVIFDGITLNTQNLDTVDVN 245 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKT 307 +E E L RF+VL + + I + K+ + + L + F N + Sbjct: 246 LEVE---------LYRFLVLFYYLKESDINKIEKRLRVNKIYLKALKDLVFLREQLNCQN 296 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 +I +I++ ++V+ A +++ + K + G Sbjct: 297 KNIRKIRETIEETKEEVLRA-IEVMEGEKAEKII------------------KGKLTVKG 337 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 D+ G+PP G ++ + + IN E++ Sbjct: 338 KDIKNLGLPPSPLYGELMDNVFEAKINGIIATRDEEI 374 >gi|39938588|ref|NP_950354.1| tRNA nucleotidyltransferase/polyA polymerase [Onion yellows phytoplasma OY-M] gi|39721697|dbj|BAD04187.1| tRNA nucleotidyltransferase/polyA polymerase [Onion yellows phytoplasma OY-M] Length = 412 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 106/413 (25%), Positives = 165/413 (39%), Gaps = 44/413 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVIPT 73 I+++L ++ IVGG VRD L+ ++ +DIDI T P ++ + K Sbjct: 16 AQKIITILKTNGFEAFIVGGTVRDYLLKINANEDIDITTAAAPQQIKLLL--CPEKTTQI 73 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I+YG+ KI F+ITT R + D R+ ++ FT++ D LRRDFTIN L D+ Sbjct: 74 KINYGSFKITFENYLFEITTYRKEGTYKDYRHPSEIFFTKNIHQDLLRRDFTINTLLMDE 133 Query: 132 QGKVIDYV---GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 GK+ D+ G DL+ I+ I D R ED LRILR F F + G I+ Sbjct: 134 TGKIFDFTPEKQGKKDLKQGLIRTIKDPFIRFQEDPLRILRAFYFQSKLG-FCIEKTTQK 192 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----------- 237 A I+ L +SS+RI+ I K++ KN M +FL Sbjct: 193 AIIRKNHLLAKISSQRIYENIEKIITHKNWHQTFKTMIETK--THLFLPQLNQSILCLAY 250 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 + E L + + ++ W + LL +L S+ K KK S L Sbjct: 251 LHETKLKYIQAHHKLKRRIFWSMSLLLNNQILASFPFTKQ-----KKKSYQNIASLSLYL 305 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + N FN + +G K + +I L +I Q L Sbjct: 306 WENITFN------------LFKHGLKNCLLANQINYLLQKEPYAAAKIQYIYQYL---PI 350 Query: 358 WKKPLFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + +V+K P G + + + +N +E L + + Sbjct: 351 KTITELNFSWQEVLKQLPHKPKGTWIKHTQKQLITKVLNREIPNIKEQLINFV 403 >gi|310779055|ref|YP_003967388.1| CBS domain containing protein [Ilyobacter polytropus DSM 2926] gi|309748378|gb|ADO83040.1| CBS domain containing protein [Ilyobacter polytropus DSM 2926] Length = 857 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 89/417 (21%), Positives = 171/417 (41%), Gaps = 30/417 (7%) Query: 13 SDLINILSLL----NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM-RIFSKTR 67 DLI++L + K ++K +VGG VRD ++ + +DIDI + ++ Sbjct: 453 KDLIDLLKAIEKIAKKRKEKVYMVGGIVRDIILGIPNKDIDIVVEGEGIAFAWDLKNELN 512 Query: 68 YKVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + I + T +I K D+ T R + V + D RRDFTIN+ Sbjct: 513 GEKIVVHEKFKTAVVIVDKDLKIDVATSRVEYYEYPTSLPSVDYGSIREDMYRRDFTINS 572 Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN- 181 L + G+++D+ G D++NR I+ + + +ED RI+R FRF + Y K Sbjct: 573 LALEVDYQKFGELVDFFNGYRDIQNREIRILHN--FSFVEDPTRIIRAFRFASRYDFKIE 630 Query: 182 IDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-- 239 +++ + LK +S R+ +E +L KNP A+ + + K I +++ Sbjct: 631 EETERFLKDAVENGFLKKISWPRVKNEFKIILGDKNPEKALNFLEKYDVLKNIHHNIKLT 690 Query: 240 ---EISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + L++L+ + E + K ++ F++L+ I + KFS ++ R Sbjct: 691 EKMKKHLEELNSLGEMFSQLKLK-KWIMAFLILMEDLKSDEIELIFNKFSFSQDFRKKYE 749 Query: 297 -SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + L + Y +++ L + + + FI + Sbjct: 750 FGIKKRSEALSKLKKADKNSEIYDTLNEISFEVLMLIYLEGKKSSREKIRKFIFDL---- 805 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ-LSQEDLHHLLRKL 411 K +TG D++ G P + IL ++ ++ +++E L + K Sbjct: 806 ---SKIKPLVTGADLISVGYKPSPEFRKILEDALYRQLD--YKGITKEQLMSNINKF 857 >gi|305664812|ref|YP_003861099.1| putative polyA polymerase [Maribacter sp. HTCC2170] gi|88707934|gb|EAR00173.1| putative polyA polymerase [Maribacter sp. HTCC2170] Length = 478 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 85/452 (18%), Positives = 168/452 (37%), Gaps = 64/452 (14%) Query: 8 KWFHDSDLINILS-LLNKGEDKSCIVGGAVRDSLMNLSV-QDIDIATT----ILPDRVMR 61 K D + ILS + +S ++GG VRD +++ +DIDI + L ++V Sbjct: 7 KALQDP-IFKILSDAASGLALESYVIGGFVRDYILDRGTHKDIDIVSIGSGIALAEKVAS 65 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRD 121 + I ++GT + + R + +V K D RRD Sbjct: 66 MLP--GNPKISIFKNFGTAMLRHHDMELEFVGARKESYQRDSRKPIVEDGTLKEDQERRD 123 Query: 122 FTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY 177 FTINAL G ++D G+ DL + I+ + +D LR++R RF Sbjct: 124 FTINALALSLNKENFGDLLDPFEGVLDLDKKIIRTPLEPCVTYSDDPLRMMRAIRFATQL 183 Query: 178 GEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD 237 I+ L A + K+ +KI+S+ER E++K++ + P ++N G+ I + Sbjct: 184 N-FEIELRSLQAITENKERIKIISAERTVDELHKIMACEKPSIGFSLLHNTGLLDYILPE 242 Query: 238 VQEI----------SLDQLSQVIEA-EQVFEWKIDSLLRFIVLISWQDK----------- 275 + + D +E + + + D LR+ L+ K Sbjct: 243 LTALEGIEEVEGQRHKDNFWHTLEVVDNIAQTTDDLWLRWAALLHDIGKAPTKKFSKKVG 302 Query: 276 -----------KSILSMAKKFSLPREIRYF------LISFFNCNFNQKTLSIPEIKKLFY 318 K + + K+ +P + L+S + + +++L + Sbjct: 303 WTFHGHEFVGSKMVYKLFKRLRMPLNDKMKFVQKMVLMSSRPIVLAEDFATDSAVRRLVF 362 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDD 369 GD + + + A + + + + H + P++G++ Sbjct: 363 DAGD-YVEDLITLCEADITTKNPRKQKKYKNNFKLVRAKIVEVEERDHIRNFQPPVSGEE 421 Query: 370 VVK-YGIPPGKKVGNILVHCKQEWINSSFQLS 400 ++K + + P K++G I K+ + Sbjct: 422 IIKTFNLKPSKEIGIIKAAIKEAILEGEIPNE 453 >gi|319785837|ref|YP_004145312.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudoxanthomonas suwonensis 11-1] gi|317464349|gb|ADV26081.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Pseudoxanthomonas suwonensis 11-1] Length = 412 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 77/431 (17%), Positives = 162/431 (37%), Gaps = 75/431 (17%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ L D D + +++ + + P + T + Sbjct: 2 ETYLVGGAVRDELLGLPPGDRDWVVVGATAQQMLDAGFRPVGRDFPVFLHPETGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + + V D + D LRRDFTINA+ G ++D GG+ Sbjct: 57 ---EHALARTERKSGRGHRGFVVDADPSVTLEEDLLRRDFTINAIARGDDGTLVDPHGGM 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +D+R+R ++ +G A ED LR+LR RF A + ++ L+ + L+ Sbjct: 114 DDIRDRVLRHVGPA---FTEDPLRVLRAARFMARFAPLGFRVAPETMALMRQMAEAGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L +ER+W E+ + L + P + + G + +V D L V + + + Sbjct: 171 TLVAERVWQELRRALASARPSAFLATLRECGALAVVLPEV-----DALYGVPQRAE-YHP 224 Query: 259 KIDSLLR-------------------FIVLISWQDK-------------------KSILS 280 ++D+ + F L K K + Sbjct: 225 EVDTGIHQQMVSDMAARLAPGDDLVGFAALTHDLGKALTPPHVLPRHIGHEGAGLKPLAR 284 Query: 281 MAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKI-FL 333 + ++ +P R + + N + ++ E+ + + +A++ + Sbjct: 285 LCERLRVPLAHRKLAEAVCREHLNVHRLAELRDQTVLELLERCDAFRQPGQVARIALCCE 344 Query: 334 ALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV-VKYGIPPGKKVGNILVHCKQEW 392 A L ++ + ++ + D+ + G+ G ++G L + + Sbjct: 345 ADKRGRLGSEEAEYPQG--PELCRLHAAASAVNARDLALAEGLT-GTEIGKALRRARVQA 401 Query: 393 INSSFQLSQED 403 I+++ L + Sbjct: 402 ISAARTLRRPA 412 >gi|93004954|ref|YP_579391.1| poly(A) polymerase [Psychrobacter cryohalolentis K5] gi|92392632|gb|ABE73907.1| poly(A) polymerase [Psychrobacter cryohalolentis K5] Length = 753 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 126/283 (44%), Gaps = 12/283 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +++ L + + IVGG VRD+L+ L +D D T P + +F K R ++I Sbjct: 20 ITEVIATLTRAGFDAYIVGGGVRDTLLGLRPKDFDAVTDAKPHEIKDVFGK-RCRII--G 76 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT------DGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++ ++ T R I DG + D K D RRDF+INALY Sbjct: 77 RRFQLAHVYSGRELIEVATFRGPPINDSNTNQDGMILRDNVWGDIKQDFARRDFSINALY 136 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +G V D+ L D+ N+ I+ +G+A RI ED +R+LR RF A G + Sbjct: 137 YQPLKGIVHDFCDALEDIDNKIIRLLGNAPIRIEEDPVRLLRALRFKAKLGFEFDSELAA 196 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--EIFLDVQEISLDQ 245 L+ +S R++ E K+ + + +++ G I+ + +L + Sbjct: 197 QFHDGNWSLLEQISPHRLYDETQKMFTGGYLVPLLPLLFDSGAIDSLIIYPPSEPSALVK 256 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 + +++ K + F + W++ L AKK ++P Sbjct: 257 QVAINTDKRIAAGKSINPAFFYAALLWENYLHQLEKAKKRNMP 299 >gi|114564148|ref|YP_751662.1| metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB 400] gi|122298996|sp|Q07YU1|CCA_SHEFN RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|114335441|gb|ABI72823.1| metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB 400] Length = 414 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 43/355 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ +V D D + + ++ + + K P + T + Sbjct: 2 KIYLVGGAVRDTLLKQTVVDKDYVVVGSSVEEMLALGYQQVGKDFPVFLHPKTQQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D LRRD TINA+ D+ G + D G+ Sbjct: 57 ---EYALARTERKTGYGYQGFSCDANKDVTLSEDLLRRDLTINAIAQDEHGTLTDPFHGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLK 198 D+ + ++ + DA ED LR+LR RF A + I + L+ I L Sbjct: 114 ADINAKILRHVSDA---FTEDPLRVLRVARFAARFHHLGFTIAPETLQLMTDIANSGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L +++P + +F +V D L V + E+ + Sbjct: 171 HLTPERVWQECDKALSSQSPQVFFDVLKQCQALIVLFPEV-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L S + +R+ + + K L+ + Y Sbjct: 225 EIDTGIHTLM---------VLEQTSLLSDNKAVRFAAL----VHDLGKALTPKQDWPKHY 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +G K + K+ + N + + ++SD F L + +VK Sbjct: 272 GHGQKGLPVIKKLCARIRVPN----EYRDLALLVSDQHQNIHNAFELRAETIVKL 322 >gi|332704141|ref|ZP_08424229.1| Polynucleotide adenylyltransferase region [Desulfovibrio africanus str. Walvis Bay] gi|332554290|gb|EGJ51334.1| Polynucleotide adenylyltransferase region [Desulfovibrio africanus str. Walvis Bay] Length = 902 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 85/424 (20%), Positives = 152/424 (35%), Gaps = 32/424 (7%) Query: 13 SDLINILSLLNK----GEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 D++ IL+L K + VGG VRD L+ DID+ + Sbjct: 466 EDILGILTLAGKLADEDGFEVFAVGGFVRDILLRQPNFDIDLVAEGDGIAFAYKLAGVLG 525 Query: 69 KVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + T II + D+ T R + VV K D RRDFTINAL Sbjct: 526 GRVKAHHKFKTAVIILPNGQRIDVATARLEYYEYPAALPVVELSSIKMDLYRRDFTINAL 585 Query: 128 YADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-I 182 G + D+ G D++++ I+ + +ED RILR RF + + Sbjct: 586 AVHLNPGRFGLLEDFFGAQRDIKDKIIRVLH--SLSFVEDPTRILRAIRFEQRFEFRIGG 643 Query: 183 DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-- 240 ++ L+ + + LS RI+ E+ + + +N L + M + + I ++ Sbjct: 644 QTERLIRNAVQMTFFQKLSGTRIFHELRLIFDERNALRCLRRMDSFALLTHIHPNLTLDD 703 Query: 241 ---ISLDQLSQVIEAEQVFEWKIDS---LLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 L++L V ++ + + ++ + L + ++ +A R+ Sbjct: 704 KLIKYLEELESVRNWYRLLYEEPAAQSWIVYLLGLCGHLPPEELVQIAGNLGFTERQRHD 763 Query: 295 LISFFNCNFNQKTLSIP-----EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFIL 349 ++ I E Y ++ + + L L + Q I Sbjct: 764 FLALRERTGQALGKLINWSQSGEPLSGLYFILHELPVEGV---LLLMAKSTRDQVKKAIS 820 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 L+ + H K + G D+ G+ PG G IL I+ + + L L Sbjct: 821 VYLTRLRHIK---LEIGGADLRIIGLEPGPAYGRILREVLAARIDGKAECRGDQL-ALAE 876 Query: 410 KLIA 413 L Sbjct: 877 SLAG 880 >gi|325266509|ref|ZP_08133186.1| multifunctional CCA protein [Kingella denitrificans ATCC 33394] gi|324981952|gb|EGC17587.1| multifunctional CCA protein [Kingella denitrificans ATCC 33394] Length = 410 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 74/304 (24%), Positives = 125/304 (41%), Gaps = 36/304 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+NL V+D D + ++++ + K P + Sbjct: 2 EIYLVGGAVRDALLNLPVKDRDWVVVGATAEQLLAQGYQPVGKDFPVFLHPQ-------- 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y D + D RRD TINA+ DQ G++ID GG Sbjct: 54 SHEEYALARTERKTGRGYTAFQVFADPNVTLEEDLQRRDLTINAMAQDQDGRIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL+ ++ + A ED +RILR RF A YG ++ L+ + L Sbjct: 114 QDLQRGILRHVSPA---FAEDPVRILRVARFAARYGFSVAEETMRLMRGMVENGEAHALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E+ K L + P + + G + +V D L V + + +ID Sbjct: 171 AERVWQELAKGLMERQPRRMVEVLRECGALAVLLPEV-----DALFGVPQRAD-YHPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S ++ +L A LP RY + + K L+ +I + Sbjct: 225 SGEHTLL---------VLQRAADMDLPLAERYAAL----LHDLGKALTPADILPKHIGHD 271 Query: 322 DKVM 325 ++ + Sbjct: 272 ERGI 275 >gi|257455099|ref|ZP_05620337.1| poly(A) polymerase [Enhydrobacter aerosaccus SK60] gi|257447432|gb|EEV22437.1| poly(A) polymerase [Enhydrobacter aerosaccus SK60] Length = 742 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 125/279 (44%), Gaps = 12/279 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + ++S L + ++ IVGG VRD+L+ L +D D T P+++ +F K R ++I Sbjct: 47 IKEVISTLTQAGFEAYIVGGGVRDALLGLKPKDFDAVTNATPNQIKEVFGK-RCRII--G 103 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI------TDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + + ++ T R+ DG + D D +RRDF+INALY Sbjct: 104 RRFQLCHVYSGRDMIEVATFRAPPKDNNHVTEDGMIMRDNVWGDIYQDVVRRDFSINALY 163 Query: 129 ADQQGKV-IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + D+ GGL D+ NRTI+ +GD R+ ED +R+LR RF A ++ Sbjct: 164 YQPFDDIVYDFCGGLKDVENRTIRLLGDTQKRVEEDPVRLLRALRFKAKLQFDFDNALNQ 223 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 + + L +S R++ E K+ + + +++ G F ++ L+ Sbjct: 224 QFNAQNWALLAQVSPHRLYDETQKMFTGGYLVPMLPLLFDYGAFSQLLFYPPTTVTPLLN 283 Query: 248 QVI--EAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKK 284 QV ++ K + F I W++ +L KK Sbjct: 284 QVTINTDRRIGSGKSINPAFFYATILWENYLYLLDKFKK 322 >gi|134294830|ref|YP_001118565.1| poly(A) polymerase [Burkholderia vietnamiensis G4] gi|134137987|gb|ABO53730.1| poly(A) polymerase [Burkholderia vietnamiensis G4] Length = 517 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 107/246 (43%), Gaps = 33/246 (13%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L ++ +D D+AT P V R+F + R Sbjct: 72 LISKNAVRVTDTLQQAGFRAFIVGGAVRDLLFGIAPKDFDVATDATPTEVQRLFRRARL- 130 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS----------------------DLITD-----G 102 + + + ++ +++T R+ D T G Sbjct: 131 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAPAEPPKRLKRDELDRRTHAVDASG 187 Query: 103 RYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHRIL 161 R + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 188 RVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADMRARLLRMIGDPATRYR 247 Query: 162 EDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNA 221 ED +R+LR RF A G I+ + + + R++ E+ KLL + + L Sbjct: 248 EDPVRMLRVVRFAAKLG-FEIEPHTREPIKPLADLINNVPAARLFDEMLKLLLSGHALAC 306 Query: 222 IVHMYN 227 + + Sbjct: 307 LKQLRE 312 >gi|83644220|ref|YP_432655.1| tRNA nucleotidyltransferase [Hahella chejuensis KCTC 2396] gi|123534381|sp|Q2SM94|CCA_HAHCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|83632263|gb|ABC28230.1| tRNA nucleotidyltransferase [Hahella chejuensis KCTC 2396] Length = 422 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 79/400 (19%), Positives = 141/400 (35%), Gaps = 51/400 (12%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+ L V+D D + P++++ + P + ++++ Sbjct: 4 YLVGGAVRDALLGLPVKDRDWVVVGATPEQMLDQGYQQVGADFPVFLHPE-----SKEEH 58 Query: 89 FDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R G + D LRRD TINA+ D G ++D G DL Sbjct: 59 ALARTERKSGKGYTGFICDFSPDISLEDDLLRRDLTINAMAMDDDGNLVDPFNGRQDLEA 118 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSSE 203 R ++ + A ED LR+LR RF + Y + ++ L+ I+A LK L++E Sbjct: 119 RILRHVSPA---FTEDPLRVLRVARFASRYADLGFTVAPETLQLMQDIQASGELKALTAE 175 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS------------LDQLSQVIE 251 R+W E + L K P + + ++IF ++ + L ++ Sbjct: 176 RVWQETVRALGQKQPRVYFQVLKDAHALQDIFPELNALFGVPQTPQYHPEVDTGLHSLMA 235 Query: 252 AEQVFEWKIDSLLRFIVLISWQDK----------------------KSILSMAKKFSLPR 289 EQ +RF LI K K++ K L + Sbjct: 236 LEQACLLSEREEVRFAALIHDLGKGVTPQEEWPKHHNHEAVGVDLVKALTERVKAPKLFK 295 Query: 290 EIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ--DTCF 347 E+ + L + KL + ++FL + + Sbjct: 296 ELALMACQYHTHCHRALELRANTLVKLLQSCDAWRRPDRFELFLLACEADARGRTGWEQK 355 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + + + ++V G G ++G + Sbjct: 356 PYPQADFLRGVLETCQQIQPQELVAQGYT-GARLGEEIQR 394 >gi|256752052|ref|ZP_05492920.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter ethanolicus CCSD1] gi|256749062|gb|EEU62098.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter ethanolicus CCSD1] Length = 388 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 91/397 (22%), Positives = 160/397 (40%), Gaps = 37/397 (9%) Query: 14 DLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 DLI +L ++ K + KS IVGG VRD L+ + DID+ I I Sbjct: 9 DLIKLLKEISSKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLKGDIV 68 Query: 73 TSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-Q 131 ++ T + D+ + R + + + D RRDFTIN L D Sbjct: 69 VYEAFRTATLSYDGISIDVISARKEYYERPAALPTIEFSNIYDDMARRDFTINTLAYDVI 128 Query: 132 QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI 191 + K++DY GL DL+ I+ + ++D RI R R+ Y I+ Sbjct: 129 EEKILDYFNGLEDLKKGLIRVLHP--KSFIDDPTRIFRAIRYATRY-SFEIEEKTHNLMK 185 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQLSQV 249 + + +++LS++RI +EI +L+ I + GI K IF + + LD + Sbjct: 186 DSIENIRLLSADRIRNEIFLILKESKAKEMIDKLIYYGIDKVIFDGITLNTQHLDTVYVN 245 Query: 250 IEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKT 307 +E E L RF+VL + +K I + K+ + + L + F N + Sbjct: 246 LEIE---------LYRFLVLFYYLKEKDINEIEKRLRINKIYLKALKDLVFLREQLNCQN 296 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 +I +I++ ++V+ A +++ + K + G Sbjct: 297 KNIRKIRETIEETKEEVLRA-IEVMEGEKAEKII------------------KGKLTVKG 337 Query: 368 DDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 D+ G+PPG G ++ + + IN E++ Sbjct: 338 KDIENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374 >gi|107021834|ref|YP_620161.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054] gi|105892023|gb|ABF75188.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054] Length = 518 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 35/250 (14%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 65 PALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRAR 124 Query: 68 YKVIPTSISYGTIKIICRKKYFDITTLRS------------------------DLITD-- 101 + + + + +++T R+ D T Sbjct: 125 L----IGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAV 180 Query: 102 ---GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAH 157 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 181 DASGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPA 240 Query: 158 HRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKN 217 R ED +R+LR RF A G I+ + + + R++ E+ KLL + + Sbjct: 241 TRFREDPVRMLRVVRFAAKLG-FEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGH 299 Query: 218 PLNAIVHMYN 227 L + + Sbjct: 300 ALARLQRLRK 309 >gi|262341231|ref|YP_003284086.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272568|gb|ACY40476.1| tRNA nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 471 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 100/468 (21%), Positives = 183/468 (39%), Gaps = 66/468 (14%) Query: 1 MVSIVQHKWFHDSDLINILSL-LNKGEDKSCIVGGAVRDSLMNL-SVQDIDIATTILPDR 58 + S +Q K FH I+S K + S +VGG VRD L+ +D+DI T + Sbjct: 3 LSSAIQKKIFH------IVSFSAQKIKQDSYVVGGYVRDFLLGKIKSKDVDILTIGEGIK 56 Query: 59 VMRIFSKTR--YKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKAD 116 + + SK + I +GT + C + + R + + + D Sbjct: 57 LAQEVSKNMKPHPKIKIFRRFGTAMLKCENQKIEFVGSRKESYHFYSRKPFIRLGSLQDD 116 Query: 117 SLRRDFTINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRDFTINAL D G++ID GGL+DL+ + ++ ++ +D LR++R R Sbjct: 117 QNRRDFTINALAISLNRDNYGELIDPFGGLSDLKKKILRTPLNSDITYSDDPLRMMRAIR 176 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + I+ + K K + I+S+ERI E NK+L ++ P ++ +Y G+ Sbjct: 177 FATQL-QFTIEEYSFKSIQKNKNRINIVSTERIIEEFNKILLSEKPSIGLLLLYKSGLLS 235 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDS------------LLRFIVLISWQDKKSILS 280 I ++ + + + + F + LR+ L+ K + Sbjct: 236 IILPELTLLKGIEKKNGCKHKDNFYHTLQVVDNISQVKTNSLWLRWAALLHDIGKAYTKN 295 Query: 281 MAK---------------------KFSLPR----EIRYFLI--SFFNCNFNQKTLSIPEI 313 K + LP+ + +I S+ +S I Sbjct: 296 FTKIGWSFHAHEFVGSKMVPNIFQRLKLPKGGPMKYVKKMIQYSYKPIALIGNQISDSAI 355 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF---------ILQVLSDIIHWKKPLFP 364 ++L + G K + +K+ +A N + + +Q L + + P Sbjct: 356 RRLLFDLG-KDLEDLMKLCIADITTNNIEKRKQYQKNIYILMERIQKLEEKDRIQNWKSP 414 Query: 365 LTGDDVVK-YGIPPGKKVGNILVHCKQEWINSSFQLS-QEDLHHLLRK 410 ++G+D++K + I P K++G I K + +L+K Sbjct: 415 ISGNDIMKTFQIDPCKEIGIIKNFIKDSILEGKISNDFHSAYLFMLKK 462 >gi|313200253|ref|YP_004038911.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus sp. MP688] gi|312439569|gb|ADQ83675.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus sp. MP688] Length = 407 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 137/355 (38%), Gaps = 26/355 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L VQD D + P + + K P + T + Sbjct: 2 QTFVVGGAVRDALLGLPVQDQDHVVVGSTPAEMEAAGFRRVGKDFPVFLHPDTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D RRD TINA+ + G +ID G Sbjct: 57 ---EYALARTERKTAKGYKGFEVHASPDVTLEEDLARRDLTINAIARAEDGSLIDPYHGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL R ++ + A ED +RILR RF A + E + + L+ + A + L Sbjct: 114 ADLEARILRHVSPA---FAEDPVRILRAARFAARFTEFTLAHETLALMQQMVADGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ K L P + G + IF + LD+L V + Q +I Sbjct: 171 VPERVWQELAKGLMEAKPSRMFEMLRACGALQRIFPE-----LDRLWGVPQPAQ-HHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI--SFFNCNFNQKTLSIPEIKKLFY 318 D+ + +++I + + + +L ++ + + + S+ +K + Sbjct: 225 DTGVHVMMVIDYAASQGYSLPVRFAALTHDLGKGTTPPDIWPRHIGHELRSVDLLKDVVK 284 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 +L +A + + + +L + P DD +K Sbjct: 285 RLRVPNDCRELAQLVARFHGKVHQVNAMRPDTLLHFLQELDALRQPTRFDDFLKA 339 >gi|297180697|gb|ADI16906.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma proteobacterium HF0010_16J05] Length = 435 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 12/232 (5%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D ++++ LN + +VGG +RD+L + +D D+AT D V RIF ++R Sbjct: 47 DHDALDVIQQLNAHGFTALLVGGCIRDALCGVQPKDFDVATDAPLDEVKRIFRRSRI--- 103 Query: 72 PTSISYGTIKIICRKKYFDITTLR------SDLITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + + +++T R + G + + D+ RRDF+IN Sbjct: 104 -VGRRFPIAHVRYGRNLIEVSTFRQSVSENIEHDAQGMILRDKAYGTLQEDAFRRDFSIN 162 Query: 126 ALYADQQ-GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D ++IDYVGGL DL +K IGD R+ ED +RILR RF G ++D Sbjct: 163 ALYFDPNKNEIIDYVGGLEDLAAGEVKLIGDPAVRLAEDPVRILRAVRFANKLG-FSLDP 221 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + + + L + R++ E K+ N H+ + GI + +F Sbjct: 222 RIIELFEDSARRLTAIPPARLFDEFLKMFLTGCGENIWQHIRHTGIARVLFP 273 >gi|325266879|ref|ZP_08133550.1| poly(A) polymerase [Kingella denitrificans ATCC 33394] gi|324981620|gb|EGC17261.1| poly(A) polymerase [Kingella denitrificans ATCC 33394] Length = 443 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 10/226 (4%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + ++ +LS L++ ++ +VGGAVRD L+ + +D D+AT LP++V +F ++R Sbjct: 32 IRNHAVLKVLSGLHRAGFEAYLVGGAVRDLLLGKTPKDFDVATNALPEQVRGVFKRSRI- 90 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSD----LITDGRYAKVVFTRDWKADSLRRDFTIN 125 + + ++ + +++T R GR + D+ RRDFT N Sbjct: 91 ---IGRRFQIVHVMVGAETIEVSTFRGGGNVKHNESGRIVRDNAYGTLAQDAFRRDFTCN 147 Query: 126 ALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDS 184 ALY D Q ++ID+ GL+D+R + + IGDA R +ED +RILR R G +D Sbjct: 148 ALYYDVQNQQIIDFHNGLSDIRAKRLVMIGDAAERYVEDPVRILRAIRLSGKLG-LTLDE 206 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 L+ R++ E+ K+L + + + G+ Sbjct: 207 ATAAPLAAHAALLRHEPVSRLFDELLKILLSGHAAGCLRQFQACGL 252 >gi|253997358|ref|YP_003049422.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylotenera mobilis JLW8] gi|253984037|gb|ACT48895.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylotenera mobilis JLW8] Length = 402 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 67/346 (19%), Positives = 139/346 (40%), Gaps = 26/346 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ IVGGAVRD L+ +++D D + P++++ + K P + T Sbjct: 2 QTYIVGGAVRDELLGYAIKDKDYVVVGSTPEQMVAAGFRPVGKDFPVFLHPVT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y + D RRD TINA+ + G+++D G+ Sbjct: 55 -QAEYALARTERKTAKGYKGFAVHASPEVTLEQDLARRDLTINAIAKSESGELVDPFNGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 D++ +T++ + A +ED +RILR RF A + + ++ + L+ + + L Sbjct: 114 ADIQAKTLRHVSAA---FVEDPVRILRIARFAARFTDFHVAPETLSLMQIMVDAGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W EI K L P + G + I + LD+L V + Q + ++ Sbjct: 171 VVERVWQEIAKGLMESQPSRMFNVLRACGALQRIMPE-----LDKLWGVPQPPQ-YHPEV 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFNQKTLSIPEIKKLFY 318 D+ + ++++ + +++ + +L ++ + + + +K L Sbjct: 225 DTGVHVMLVVDYAAQQNFTLPVRFAALMHDLGKGTTPQDILPRHIGHEERGVHLVKDLCK 284 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 +L + + + L +L +I P Sbjct: 285 RLRVPNDCRELALMVTKFHGKLYQSLAMRPDTLLQFLIQLDAIRQP 330 >gi|258622328|ref|ZP_05717353.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus VM573] gi|258585344|gb|EEW10068.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus VM573] Length = 403 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 87/416 (20%), Positives = 155/416 (37%), Gaps = 67/416 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + T ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D+ G+VID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDESGQVIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+ I L L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLAHLGFTVAEETMQLMTDIAQSGELGHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + + LD+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPE-----LDRLFGVPQPEK-WHPEID 227 Query: 262 SL------------------LRFIVLISWQDK-------------------KSILSMAKK 284 + +RF + K K I S+ + Sbjct: 228 TGIHTLMVTKQAALLSDSLPVRFAAQVHDLGKGVTPPSEWPSHKLHCHTGLKVIESLCDR 287 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG-------DKVMIAKLKIFLALHY 337 +P E R ++ + N + + G + + L A H Sbjct: 288 IRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPERLEQVLLCCEADHR 347 Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWI 393 L ++ + + + + + V++ G GK++ L + + I Sbjct: 348 GRLGLEEKPYPQRDIFLRAYQAALSVEVQA--VIRDGF-HGKQIKEELDKRRIQVI 400 >gi|251792112|ref|YP_003006832.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Aggregatibacter aphrophilus NJ8700] gi|247533499|gb|ACS96745.1| multifunctional CCA protein [Aggregatibacter aphrophilus NJ8700] Length = 423 Score = 218 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 115/250 (46%), Gaps = 20/250 (8%) Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 + +VGGAVRD L+NL VQD D P ++ + + K P + + Sbjct: 6 FQIYLVGGAVRDQLLNLPVQDRDWVIVGATPQALLSLGYQQVGKDFPVFLHPQ-----SK 60 Query: 86 KKYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 ++Y T R S G + D +RRD TINA+ D QG + D G +D Sbjct: 61 EEYALARTERKSGQGYTGFICDFSADITLEQDLIRRDLTINAMAQDLQGNLYDPYHGADD 120 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLKIL 200 L+ R ++ + A +ED LR+LR RF A Y I+ + L+ ++ + L+ L Sbjct: 121 LKQRILRHVSPA---FVEDPLRVLRVARFAARYHHLGFTIEPETLQLMQTLTEQGELQHL 177 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ++ER+W+E K L KNP + G +F + LD L V + F +I Sbjct: 178 TAERVWAETEKSLNEKNPEIYFETLRQIGALAVLFPE-----LDALYGVPNPAK-FHPEI 231 Query: 261 DSLLRFIVLI 270 DS + ++++ Sbjct: 232 DSFVHTMIVL 241 >gi|328955695|ref|YP_004373028.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Coriobacterium glomerans PW2] gi|328456019|gb|AEB07213.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Coriobacterium glomerans PW2] Length = 492 Score = 218 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 86/456 (18%), Positives = 165/456 (36%), Gaps = 81/456 (17%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +L L + + K+ VGG VRD+L+ DIDI + +V+ T Sbjct: 30 ASTVLRALEETDLKAWFVGGWVRDALLGSESHDIDICCSGSWQSNAAALRAAGIEVLETG 89 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 +S+G I + ++T+ R D DGR+ ++ + D RRD T+NA+ + Sbjct: 90 VSFGGITAVIAHDRVEVTSYRIDGDYVDGRHPVRIERAGSIEDDLARRDLTVNAMAWHPE 149 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 +ID G DL R I+ +G A R ED LR+LR RF + +D + A Sbjct: 150 RGLIDLFDGRGDLARRVIRAVGIARERFEEDALRMLRAVRFACSL-DFKMDFETDEAIRA 208 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 LK +S++R+ SE++++L + +A+ H + +++ +L+++ Sbjct: 209 CAPLLKAISAQRVGSELDRILASGRGGDALAH----------HPALMCVAIPELARLRGF 258 Query: 253 EQVFEWK-------------------------------IDSLLRFIVLISWQDKKSILSM 281 +Q + +D L + L+ K ++ Sbjct: 259 DQRSRYHDFDVYDHTARVLTVASELALASDTDGGALSALDPALMWAALLHDIAKPETFTL 318 Query: 282 AK----------------------KFSLPREIRY---FLISFFNCNFNQKTLSIPEIKKL 316 + + + PR++ LI + + + L Sbjct: 319 DRDGQGHFFGHPELGADLAGRIMGRLARPRDVVRDACLLIRYHDRPMRPDRSDLLGAMAL 378 Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQDTCF------------ILQVLSDIIHWKKPLFP 364 G ++F + L +CF + ++L+ + Sbjct: 379 MSRPGADTAHIMDELFDLKRADTLGKAPSCFCYVDEIERMREMVHELLAHREAYSLATLS 438 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLS 400 + G D+++ G+ PG +G +L I Sbjct: 439 INGGDLIRVGVEPGPPIGTLLREALAATIAGKVDND 474 >gi|42524817|ref|NP_970197.1| poly(A) polymerase [Bdellovibrio bacteriovorus HD100] gi|39577027|emb|CAE78256.1| poly(A) polymerase [Bdellovibrio bacteriovorus HD100] Length = 409 Score = 218 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 148/340 (43%), Gaps = 36/340 (10%) Query: 5 VQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFS 64 + W DS + I+ L ++ +VGG VRD L+ + +D DIAT+ P++V + Sbjct: 18 LHEDWI-DSYALRIVRNLQDAGFETYLVGGCVRDLLVGIHPKDFDIATSAHPNQVRKKVP 76 Query: 65 KTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLIT-------DGRYAKVVFTRDWKADS 117 + + + + F++ T R ++ D + + D+ Sbjct: 77 NAYV----IGRRFKLVLVKRGDQQFEVATFRRNVTQEELADQGDDSVEGDNYFGTVEEDA 132 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 +RRDFT NA++ D Q K+IDY GG+ D+ NR ++ IGD R +ED +RILR R Sbjct: 133 VRRDFTCNAVFYDPGQHKLIDYCGGIQDIENRVLRMIGDPKARFIEDPIRILRAIRLSHK 192 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 +I++ A + LK R E K L K P A + +++ I ++I Sbjct: 193 L-HFSIETTMRAAIAECSSELKKSVLPRRREEWLKFLRLKEPHLAFMELFDLHILEQILP 251 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 + + +D ++FE + + +S DK + + F++ Sbjct: 252 GLHSVFVDA-----HKMEIFEIHLARIN-----LSGIDKNDPIEL---------FAGFMM 292 Query: 297 SFFNCNFNQKTLSIPEI---KKLFYLYGDKVMIAKLKIFL 333 +F + ++ + ++ KL Y +++ I K +I + Sbjct: 293 AFMKAQYGEEPWNHDDLSNDAKLAYFMREEMGIFKQEIAI 332 >gi|330880377|gb|EGH14526.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4] Length = 407 Score = 218 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 20/219 (9%) Query: 33 GGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFDIT 92 GG VRD ++N++ +D D+AT P++V F R + + I ++ ++ Sbjct: 1 GGCVRDMMLNITPKDFDVATNATPEQVRAEFRNARI----IGRRFKLVHIHFGREIIEVA 56 Query: 93 TLRSDLITD--------------GRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVID 137 T R++ D GR + + D+ RRDFTINALY D +V+D Sbjct: 57 TFRANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTINALYYDPVSERVLD 116 Query: 138 YVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGL 197 Y G++D+RNR I+ IGD R ED +R+LR RF A + I+ L Sbjct: 117 YANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKL-DFGIEKHSAQPIRSLAPML 175 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + + S R++ E+ KL + + + + +F+ +F Sbjct: 176 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 214 >gi|74318378|ref|YP_316118.1| metal dependent phosphohydrolase [Thiobacillus denitrificans ATCC 25259] gi|74057873|gb|AAZ98313.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Thiobacillus denitrificans ATCC 25259] Length = 542 Score = 218 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 142/348 (40%), Gaps = 31/348 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V D D + PD ++ + K P + T + Sbjct: 2 KTYVVGGAVRDRLLGLQVSDRDHVVVGATPDEMLAAGFRPVGKDFPVFLHPHTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D RRD TINA+ D+ G +ID G Sbjct: 57 ---EYALARTERKSGRGYKGFVVHAAPEVTLEEDLARRDLTINAIAEDESGTLIDPYDGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL +T + + +A ED +RILR RF A + E + + L+ + + L Sbjct: 114 ADLAAKTFRHVSEA---FAEDPVRILRVARFAARFTEFTVAPETNALMRRMVDSGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +ER+W EI + L P + + G + +V D+L V + + ++ Sbjct: 171 VAERVWQEIARGLMETQPSRMFAVLRDCGALARMLPEV-----DRLFGVPQPPE-HHPEV 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL---SIPEIKKLF 317 D+ + +++I W ++ ++A +F+ + S+ ++ L Sbjct: 225 DTGIHVMLVIDWAARQGA-NLAVRFAALTHDLGKGETSPELWPRHHGHEGASVRLVRALS 283 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQ---DTCFILQVLSDIIHWKKPL 362 +L + +A + N+ I+++L + +++P Sbjct: 284 ERLRAPAECRELAVAVARDHGNVHRALELRPRTIVELLERVDAFRRPE 331 >gi|261278704|pdb|3H38|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form Ii gi|261278705|pdb|3H39|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Atp gi|261278706|pdb|3H39|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Atp gi|261278707|pdb|3H3A|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Ctp gi|261278708|pdb|3H3A|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Ctp Length = 441 Score = 218 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 91/421 (21%), Positives = 165/421 (39%), Gaps = 23/421 (5%) Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + DIDI + Sbjct: 16 DPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFL 75 Query: 68 YKVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + T + + DI T R + V K D RRDFTINA Sbjct: 76 PGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINA 135 Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + G +ID+ GG DL+ I+ + ++D RILR RF + + Sbjct: 136 MAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLH--TLSFVDDPTRILRAIRFEQRFDFRIE 193 Query: 183 D-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----- 236 + ++ L+ + L+ + R+ E+ K+LE KNPL +I M + K +F Sbjct: 194 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYT 253 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLR-FIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + ++ L + I + ++D V + + D +S + ++SL R + + Sbjct: 254 PSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEI 313 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 + + ++Y ++ I L Y L+ + L I Sbjct: 314 RHVEKSAPALLEMLSERVPAS-FVYPLVKGVSNETICHFLAY--LSGEKEGLFKSYLLKI 370 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + K + G+ +++ GI GK +G +L + ++ + +E L +L L Sbjct: 371 KNTKLEK--INGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVLASLETEG 428 Query: 416 Q 416 + Sbjct: 429 K 429 >gi|163802697|ref|ZP_02196588.1| tRNA nucleotidyltransferase [Vibrio sp. AND4] gi|159173585|gb|EDP58405.1| tRNA nucleotidyltransferase [Vibrio sp. AND4] Length = 406 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 78/358 (21%), Positives = 135/358 (37%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 2 QVYLVGGAVRDHLLGIDSNDKDWVVVGATPEMMLAQGYTAVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ D +GK+ D GG Sbjct: 54 NKEEHALARTERKSGAGYTGFECFFDQSVTLEEDLIRRDLTINAMAMDDKGKLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 NDL+N+ ++ + A +ED LR+LR RF A ++ L+ + L Sbjct: 114 NDLQNKVLRHVSQA---FIEDPLRVLRVARFAAKLAHLGFNVAEETIQLMRDVAESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + G + +V D L V + E+ + Sbjct: 171 TLTPERVWQEWHKSLSTSCPDVFLSVLRECGALAIVLPEV-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A K S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAKQAAKLSDSLSVRFAAQVHDLGKGVTPESEWPSHKMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 KL D+V + LAL + I+++L+ W+K Sbjct: 276 TGLKLIKKLCDRVRVPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKAE 333 >gi|115374966|ref|ZP_01462237.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1] gi|310820531|ref|YP_003952889.1| poly(a) polymerase [Stigmatella aurantiaca DW4/3-1] gi|115367993|gb|EAU66957.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1] gi|309393603|gb|ADO71062.1| Poly(A) polymerase [Stigmatella aurantiaca DW4/3-1] Length = 576 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 28/288 (9%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + ++ L++ ++ +VGG VRD L+ +D D+AT+ P V F R Sbjct: 112 DPDALKVVLRLHQHGHQAYLVGGCVRDLLLGRRPKDFDVATSAHPGEVRATFRNCRL--- 168 Query: 72 PTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAK-----------------VVFTRDW 113 + + K +++T R++ + + Sbjct: 169 -IGRRFRLAHVYFKGGKIIEVSTFRANPLEMEAPEEEGAENGNGNGDDLLITHDNVFGTA 227 Query: 114 KADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 + D+ RRDFTIN L+ D +G+VIDYV G DL R I+ IGD R+ ED +RILR R Sbjct: 228 EQDARRRDFTINGLFYDVTEGRVIDYVRGRRDLDERYIRTIGDPEIRMREDPVRILRAVR 287 Query: 173 FFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK 232 F + G +I+S A A + L + R+ E +L+ ++ + K Sbjct: 288 FASKLG-LDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVAAPSLKLLSALDALK 346 Query: 233 EIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 + V L + E+E+ F ++L R + D +L+ Sbjct: 347 ILLPPVDAY----LRRSRESERTFYAFAEALDRRVATGEPLDDAILLA 390 >gi|294649931|ref|ZP_06727323.1| tRNA adenylyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292824160|gb|EFF82971.1| tRNA adenylyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 409 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 77/407 (18%), Positives = 150/407 (36%), Gaps = 62/407 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D + PD+++ + K P + T + Sbjct: 2 QVYLVGGAVRDQLLGHPYHEKDYVVVGATPDQLLAEGYQPVGKDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ D G+V D GG Sbjct: 57 ---EYALARTERKSGVGYHGFQFFTDADVSLEEDLIRRDLTINAMAMDANGQVYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH---YGEKNIDSD-GLVASIKAKKGLK 198 DL + ++ + A ED LR+LR RF A YG K D L+ I L Sbjct: 114 KDLEQKILRHVSHA---FTEDPLRVLRVARFAARYESYGFKIADETLHLMREIAKSGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L+ ER+W E + L + + K +F ++ + + Q + Sbjct: 171 ELTPERVWKETARALMEDHADVYFKTLRECHALKILFPEIDALFGVPQRPEYHPEIDCGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ +Q + +RF VL+ K + + + + + Sbjct: 231 HTLMALQQACKADYALDVRFAVLVHDLGKALTPAEELPRHVMHEERGMQPVTVLCDRLKV 290 Query: 288 PREIRYFLISFFNCNFN-------QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 P ++ ++ + + +++L L + + A ++ L Sbjct: 291 PTHLKNLALTVCKEHLKCHQVQILKPGTLWRFLQRLDVLRRPEKVRAFVQACECDARGRL 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 +D + I++ + + D+ ++ G ++G +L+ Sbjct: 351 GMEDRPY--PQAQFILNAMDIVRNIRAQDLPEH--VKGPEIGEMLIQ 393 >gi|261253885|ref|ZP_05946458.1| tRNA nucleotidyltransferase [Vibrio orientalis CIP 102891] gi|260937276|gb|EEX93265.1| tRNA nucleotidyltransferase [Vibrio orientalis CIP 102891] Length = 425 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 138/353 (39%), Gaps = 43/353 (12%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L+N++V D D + P+ ++ K P + T ++++ Sbjct: 26 YLVGGAVRDQLLNINVYDKDWVVVGSTPEELLEKGYTAVGKDFPVFLHPKT-----KQEH 80 Query: 89 FDITTLRS-DLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRN 147 T R G + D LRRD TINA+ D G ++D G DLR+ Sbjct: 81 ALARTERKVGQGYTGFECYFAADVTLEEDLLRRDLTINAMAQDSDGNIVDPFNGQQDLRD 140 Query: 148 RTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLKILSSE 203 R ++ + DA ED LR+LR RF A I + L+ I L L+ E Sbjct: 141 RVLRHVSDA---FTEDPLRVLRVARFAAKLNHLGFTIAPETLNLMREIANSGELSHLTPE 197 Query: 204 RIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSL 263 R+W E +K L ++P + + + G + + + LD L V + E+ + +ID+ Sbjct: 198 RVWQEWHKSLSTQSPQIFLKVLRDCGALQVVLPE-----LDALFGVPQPEK-WHPEIDTG 251 Query: 264 LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIPEIKKL 316 + ++ + A + S +R+ + L KL Sbjct: 252 IHTLL---------VAEQAARLSDSLPVRFAAQVHDLGKGITPESEWPSHKLHCHTGVKL 302 Query: 317 FYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 ++V I LAL + L+VL+ W+KP Sbjct: 303 IKTLCERVRIPNEFRDLALMVCEQHSNIHRAAELRPETKLKVLNKFDVWRKPE 355 >gi|71064695|ref|YP_263422.1| hypothetical protein Psyc_0114 [Psychrobacter arcticus 273-4] gi|71037680|gb|AAZ17988.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 745 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 12/283 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + +++ L + + IVGG VRD+L+ L +D D T P + +F K R ++I Sbjct: 20 ITEVIATLTRAGFDAYIVGGGVRDTLLGLRPKDFDAVTDAKPHEIKDVFGK-RCRII--G 76 Query: 75 ISYGTIKIICRKKYFDITTLRSDLIT------DGRYAKVVFTRDWKADSLRRDFTINALY 128 + + ++ ++ T R I DG + D K D RRDF+INALY Sbjct: 77 RRFQLAHVYSGRELIEVATFRGPPINDSNTNQDGMILRDNVWGDIKQDFARRDFSINALY 136 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +G V D+ G L D+ N+ I+ +G+A RI ED +R+LR RF A G Sbjct: 137 YQPLKGVVHDFCGALEDIDNKIIRLLGNAPIRIEEDPVRLLRALRFKAKLGFDFDSELAA 196 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--EIFLDVQEISLDQ 245 L+ +S R++ E K+ + + ++ G I+ + +L Q Sbjct: 197 QFHDGNWSLLEQISPHRLYDETQKMFTGGYLVPLLPLLFESGAIDSLIIYPPSEPSALVQ 256 Query: 246 LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLP 288 + +++ K + F + W++ L AKK ++P Sbjct: 257 QVAINTDKRIGAGKSINPAFFYAALLWENYLHQLEKAKKRNMP 299 >gi|30248100|ref|NP_840170.1| poly A polymerase family protein [Nitrosomonas europaea ATCC 19718] gi|30179985|emb|CAD83980.1| Poly A polymerase family [Nitrosomonas europaea ATCC 19718] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 20/239 (8%) Query: 16 INILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSI 75 + + L + + +VGGAVRD L+ L +D D+AT P+ V +F +R Sbjct: 44 LKVALALQQAGYSAYVVGGAVRDLLLGLKPKDYDVATNATPEEVRAVFRHSRI----IGR 99 Query: 76 SYGTIKIICRKKYFDITTLRSDLITD--------------GRYAKVVFTRDWKADSLRRD 121 + + +I + + +++T R + D GR + D RRD Sbjct: 100 RFRLVHVISKGEIVEVSTFRGKMADDLVETEDVQANTDATGRLLHDNVFGSQEEDVRRRD 159 Query: 122 FTINALYADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 FTINAL+ D +++DY+ G D+ + ++ IG+ R ED +R+LR R A G Sbjct: 160 FTINALFYDPATEEILDYLDGFEDVMAKRLRIIGEPEQRYREDPVRMLRAVRLSAKLG-I 218 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ID L + R++ E+ KLL + + L A++ + G+ + + Sbjct: 219 QIDDRTAAPIGDLAPLLLNVPPARLFDEMLKLLFSGHALAAVIDLRARGLHHGLLPMLD 277 >gi|71891853|ref|YP_277582.1| tRNA CCA-pyrophosphorylase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641186|sp|Q493X4|CCA_BLOPB RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|71795959|gb|AAZ40710.1| tRNA nucleotidyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 408 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 18/221 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+ L VQ+ D + P ++ I + K P + + Sbjct: 2 EKYLVGGAVRDALLKLPVQEKDWVVVGSSPQEMLNIGYEQVGKDFPVFLHP--------E 53 Query: 87 KYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ + G + + D RRD TINA+ D G +ID G Sbjct: 54 SHEEYALARTERKSGQGYTGFICHTAPSITIEEDLYRRDLTINAMAYDSHGNLIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKIL 200 D++ R ++ + H ED LR+LR RF A + I + L+ + L L Sbjct: 114 RDIKLRLLRHV---SHTFHEDPLRVLRVARFAARFAHMNFAIAPETLILMKQMIHELLSL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 S ERIW+E K L NP + + G K +F ++ + Sbjct: 171 SPERIWTETKKALITDNPQVYFTVLRHCGALKILFPELDAL 211 >gi|269960197|ref|ZP_06174572.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi 1DA3] gi|269835004|gb|EEZ89088.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi 1DA3] Length = 406 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 73/358 (20%), Positives = 132/358 (36%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D D + P+ + K P + T + Sbjct: 2 QVYLVGGAVRDHLLGIDSYDKDWVVVGSTPEMMQSQGYTAVGKDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ D+ G + D GG Sbjct: 57 ---EHALARTERKSGAGYTGFECFFDQNVTLEEDLIRRDLTINAMAMDEDGNLYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ + ++ + A +ED LR+LR RF A ++ L+ + L Sbjct: 114 RDIDAKVLRHVSQA---FVEDPLRVLRVARFAAKLAHLGFSVAEETMLLMRGMAESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + + G + ++ D L V + E+ + Sbjct: 171 TLTPERVWQEWHKSLSTSRPDVFLSVLRDCGALAVVLPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A K S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAQQAAKLSDSLPVRFAAQVHDLGKGVTPKSEWPSHKMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 KL D+V + LAL + I+++L+ W+K Sbjct: 276 TGLKLIKKLCDRVRVPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKSE 333 >gi|258626902|ref|ZP_05721706.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus VM603] gi|258580825|gb|EEW05770.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio mimicus VM603] Length = 403 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 145/346 (41%), Gaps = 27/346 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + T ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D+ G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDESGQLIDPHGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+ I L L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLAHLGFTVAEETMQLMTDIAQSGELGHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + + LD+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPE-----LDRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFY 318 + + +++ Q S+ +FS ++ + + K + I+ L Sbjct: 228 TGIHTLMVTK-QAALLSDSLPVRFSAQVHDLGKGVTPPSEWPSHKLHCHTGLNIIESLCD 286 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKP 361 L + + ++N+ D L+VL + W+KP Sbjct: 287 RIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKP 332 >gi|295696304|ref|YP_003589542.1| Polynucleotide adenylyltransferase region [Bacillus tusciae DSM 2912] gi|295411906|gb|ADG06398.1| Polynucleotide adenylyltransferase region [Bacillus tusciae DSM 2912] Length = 422 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 92/404 (22%), Positives = 169/404 (41%), Gaps = 18/404 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +++ L ++ VGG VRD L+ +D+DIAT P+ VM++F + +PT Sbjct: 13 AEEVIAALTDAGWEAVYVGGGVRDLLLGRGAKDVDIATAAPPEAVMKVFPEA----VPTG 68 Query: 75 ISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYADQQ 132 + +GT+ I + ++TT R + D R +V +T + D RRDFTINA+ + Sbjct: 69 LPFGTVTIPRQGIGVEVTTYRREGGYRDRRRPTRVEYTAKLEEDLSRRDFTINAMAMSRG 128 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 ++ID GGL DL I+ +GD R ED LR++R R A ++D ++A K Sbjct: 129 FRLIDPFGGLGDLLAGQIRAVGDPAQRFAEDALRMVRALRLAAEL-SFDLDPSVVLALNK 187 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 K ++ ++ ER+ E + L + + G + + + + QV A Sbjct: 188 QMKDVRHVAVERVLGEWQR-LAVGDVDKVARELAACGFLE--WWTGMSVGRGRGIQVAAA 244 Query: 253 --EQVFEWKIDSLLRFIVLISWQD--KKSILSMAKKFSLPREIRYFLISFFN-CNFNQKT 307 D+ LR VL+ + ++ ++ K + R + +I+++ C+F+ Sbjct: 245 WGRACRRLPRDAALRTGVLLWMLECTRQHAAAVTKSWRASRLFQRDVITWWEACHFDPLR 304 Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLAL--HYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 + + Y G + L++ A+ + + + W + F Sbjct: 305 AGPGDWARWLYHLGRERAETGLQVVQAVQGYGEEEEMASREAFRRAVDAQPLWDRRDFAA 364 Query: 366 TGDDV-VKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + + IPPG G ++ +N L L Sbjct: 365 EFETLCRAAHIPPGPLWGEAERALREALLNGQVANDPRALGEYL 408 >gi|254230374|ref|ZP_04923758.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Vibrio sp. Ex25] gi|262392388|ref|YP_003284242.1| tRNA nucleotidyltransferase [Vibrio sp. Ex25] gi|151937112|gb|EDN55986.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Vibrio sp. Ex25] gi|262335982|gb|ACY49777.1| tRNA nucleotidyltransferase [Vibrio sp. Ex25] Length = 406 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 74/358 (20%), Positives = 135/358 (37%), Gaps = 49/358 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D D + P+ ++ K P + K Sbjct: 2 QVYLVGGAVRDKLLGIDSYDNDWVVVGATPETMLSQGYTAVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D +RRD TINA+ D GK+ D GG Sbjct: 54 SKEEHALARTERKSGSGYTGFECFFDQSVTLEEDLIRRDLTINAMAMDDAGKLHDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL ++ ++ + DA +ED LR+LR RF A + N ++ L+ + L Sbjct: 114 KDLNDKLLRHVSDA---FIEDPLRVLRVARFAAKLADLNFTVADETMQLMRHMAESGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E +K L P + + + G + ++ D L V + + + Sbjct: 171 TLTPERVWQEWHKSLSTPRPDIFLSVLRDCGALAVVLPEI-----DALFGVPQPAK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF-------NCNFNQKTLSIP 311 +ID+ + ++ + A + S +R+ + + Sbjct: 225 EIDTGIHTLM---------VAEQAARLSDSLPVRFAAQVHDLGKGVTPESEWPSHRMHCH 275 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 KL ++V + LAL + I+++L+ W+K Sbjct: 276 TGLKLIKKLCERVRVPNEFRDLALMVCEQHSNIHRAAELKPQTIIKILNKFDVWRKAE 333 >gi|225024972|ref|ZP_03714164.1| hypothetical protein EIKCOROL_01861 [Eikenella corrodens ATCC 23834] gi|224942202|gb|EEG23411.1| hypothetical protein EIKCOROL_01861 [Eikenella corrodens ATCC 23834] Length = 413 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 125/325 (38%), Gaps = 50/325 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+ V+D D + ++ + K P + T + Sbjct: 2 EIYLVGGAVRDALLGREVKDRDWVVVGADAPAMLAAGYQPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T YA F + D RRD TINA+ D G++ID GG Sbjct: 57 ---EYALARTERKTGRGYAGFTFHAEPDVTLEQDLQRRDLTINAMAQDAAGQIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 DL ++ + A ED +RILR RF A YG + ++ L+A + L Sbjct: 114 ADLAAGILRHVSPA---FAEDPVRILRTARFAARYGFQVAPETLRLMADMVQNGEADALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------SLDQLSQVIEAE 253 +ER+W E + L P+ I + G + +V+ + ++ I Sbjct: 171 AERVWQEFARGLMEARPVRMIEVLRQCGALAVLLPEVEALFGVPQRADYHPEIDCGIHTL 230 Query: 254 QVFEWKIDSLL----RFIVLISWQDKKS-------------------ILSMAKKFSLPRE 290 + D+ L R+ L+ K + + ++ +++ +P+ Sbjct: 231 LTLQSAADAGLSLPERYAALLHDLGKAATAPEILPAHHGHEEAGVPLVQAVNQRWKVPKA 290 Query: 291 IRYFLISFFNCNFNQKTLSIPEIKK 315 + C ++ + E++ Sbjct: 291 CADLAVQV--CRWHGRLHKAAELRP 313 >gi|289667584|ref|ZP_06488659.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 410 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 77/409 (18%), Positives = 147/409 (35%), Gaps = 63/409 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ D D + ++ K K P + + Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVGADQAQMEAQGFKPVGKDFPVFLHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G++ D G Sbjct: 54 SGEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGELFDPYNG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + DL+ R ++ +G A +ED +R+LR RF A ++ L+ + A L Sbjct: 114 VRDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------LDQLSQV 249 L ER+W E+ + L P + +++ + I ++ + ++ Sbjct: 171 DSLVPERVWQELRRALTCAQPSALLRTLHDTAALRVILPEIDALYGVPQRAEFHPEVDTG 230 Query: 250 IEAEQVFEWKI-----DSLLRFIVLISWQDK-------------------KSILSMAKKF 285 I E V + D+L+ F L K + ++ ++ Sbjct: 231 IHQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEEWPRHVMHEQRGVAPLQALCERL 290 Query: 286 SLPREIRYFLISFFNCNFN---QKTLSIPEIKKLFYLYGDKVMIAKLK----IFLALHYN 338 +P++ R + + N LS + +L ++ + A Sbjct: 291 KVPQDHRQLAVIACREHLNVHRLPELSDRTVHELLVRCDAFRRPERIAQLALVCEADKRG 350 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 L ++ + ++ + D+ G+ G ++G L Sbjct: 351 RLGSEEAAYPQG--EELKRLHAAALAINARDLAAEGLQ-GPQIGEALTK 396 >gi|315633917|ref|ZP_07889206.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] gi|315477167|gb|EFU67910.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] Length = 422 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 115/253 (45%), Gaps = 26/253 (10%) Query: 27 DKSCIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 +VGGAVRD L+NL V+D D P ++ + K P + Sbjct: 5 FHVYLVGGAVRDQLLNLPVKDRDWVIVGATPQDLLNQGYQQVGKDFPVFLHPQ------N 58 Query: 86 KKYFDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGG 141 K+ + R++ Y + F+ D + D +RRD TINA+ D G + D G Sbjct: 59 KE--EYALARTERKAGNGYTGFICDFSADITLEQDLVRRDLTINAIAQDLAGNLYDPYHG 116 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGL 197 + DL R ++ + A ED LR+LR RF A Y NI + L+ ++ A+ L Sbjct: 117 VEDLEKRVLRHVSPA---FSEDPLRVLRVARFAARYHYLGFNIADETLQLMTALSAQGEL 173 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 + L++ER+W+E K L KNP + G K +F + LD L V + + Sbjct: 174 QHLTAERVWAETEKALNEKNPEIYFETLRQVGALKVLFPE-----LDALYGVPNPAK-YH 227 Query: 258 WKIDSLLRFIVLI 270 +IDS + ++++ Sbjct: 228 PEIDSFVHTMMVL 240 >gi|296136944|ref|YP_003644186.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thiomonas intermedia K12] gi|295797066|gb|ADG31856.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thiomonas intermedia K12] Length = 422 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 24/251 (9%) Query: 27 DKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICR 85 +S +VGGAVRD+L+ D D + P +++ + P + T + Sbjct: 10 GRSFVVGGAVRDALLGRPHGDRDWVVVGATPQQMIDAGFLPVGRDFPVFLHPQTHE---- 65 Query: 86 KKYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGG 141 + R++ T Y V D LRRD TINA+ G +ID GG Sbjct: 66 ----EFALARTERKTAPGYRGFVVQAAPEVTLGEDLLRRDLTINAMARAADGTLIDPYGG 121 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKI 199 DL+ R ++ + A ED +RILR RF A +G+ ++ + L+ + + Sbjct: 122 QRDLQARVLRHVSAA---FAEDPVRILRLARFAARFGDFSVAPETMDLMRHMVHAGEVDA 178 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L ER+W E+ + L P + G + + LD+L V + + + Sbjct: 179 LVPERVWQELARGLMEPQPQRLFAVLRECGALARLLPE-----LDRLWGVPQRAD-YHPE 232 Query: 260 IDSLLRFIVLI 270 ID+ + ++++ Sbjct: 233 IDTGVHVMLVL 243 >gi|226952618|ref|ZP_03823082.1| tRNA nucleotidyl transferase [Acinetobacter sp. ATCC 27244] gi|226836698|gb|EEH69081.1| tRNA nucleotidyl transferase [Acinetobacter sp. ATCC 27244] Length = 409 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 78/407 (19%), Positives = 150/407 (36%), Gaps = 62/407 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D + PD+++ + K P + T + Sbjct: 2 QVYLVGGAVRDQLLGHPYHEKDYVVVGATPDQLLAEGYQPVGKDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ D G+V D GG Sbjct: 57 ---EYALARTERKSGVGYHGFQFFTDADVSLEEDLIRRDLTINAMAMDANGQVYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH---YGEKNIDSD-GLVASIKAKKGLK 198 DL + ++ + A ED LR+LR RF A YG K D L+ I L Sbjct: 114 KDLEQKILRHVSHA---FTEDPLRVLRVARFAARYESYGFKIADETLHLMREIAESGELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L+ ER+W E + L + + K +F +V + + Q + Sbjct: 171 ELTPERVWKETARALMEDHADVYFKILRECHALKILFPEVDALFGVPQRPEYHPEIDCGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ +Q + +RF VL+ K + + + + + Sbjct: 231 HTLMALQQACKADYALDVRFAVLVHDLGKALTPIEELPRHVMHEERGIQPVTVLCDRLKV 290 Query: 288 PREIRYFLISFFNCNFN-------QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 P ++ ++ + + +++L L + + A ++ L Sbjct: 291 PTHLKNLALTVCKEHLKCHQVQILKPGTLWRFLQRLDVLRRPEKVRAFVQACECDARGRL 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 +D + I++ + + D+ ++ G ++G +L+ Sbjct: 351 GMEDRPY--PQAQFILNAMDIVRNIRAQDLPEH--VKGPEIGEMLIQ 393 >gi|56477346|ref|YP_158935.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Aromatoleum aromaticum EbN1] gi|73619737|sp|Q5P3T0|CCA_AROAE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|56313389|emb|CAI08034.1| tRNA adenylyltransferase [Aromatoleum aromaticum EbN1] Length = 407 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 134/347 (38%), Gaps = 28/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L VQD D + PD ++ + K P + T + Sbjct: 2 RVYVVGGAVRDRLLGLPVQDHDWVVVGATPDEMLARGFRAVGKDFPVFLHPRTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D RRD TINA+ D+ G +ID GG Sbjct: 57 ---EYALARTERKSGRGYTGFTVHASPDVTLEEDLRRRDLTINAMAQDEDGTLIDPYGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI--DSDGLVASIKAKKGLKIL 200 DL NR + + +A ED +R+LR RF A + ++ ++ L+ ++ + L Sbjct: 114 RDLENRVFRHVSEA---FAEDPVRVLRVARFAARFEGFSVAGETLALMRTMVDDGEVDHL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +ER+W E+ + L P + I +V D+L V + Q ++ Sbjct: 171 VAERVWQELARGLMETRPSRMFAVLRECCALARILPEV-----DRLFGVPQPPQ-HHPEV 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN---CNFNQKTLSIPEIKKLF 317 D+ + + ++ + +A +++ + + ++ + S + + Sbjct: 225 DTGIHVMAVVD-HAAATAQPLAVRWACLLHDLGKADTPVHVLPHHYGHEAKSADRARAVS 283 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + L + LA + L + ++ + P Sbjct: 284 ERLKAPLECRDLAVLLAREHGILHQARALRPVTIVKLLERTDALRRP 330 >gi|152968433|ref|YP_001364217.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kineococcus radiotolerans SRS30216] gi|151362950|gb|ABS05953.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Kineococcus radiotolerans SRS30216] Length = 508 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 4/251 (1%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L+++ + + +VGG VRD+ + D+D T PD +R+ Sbjct: 46 LVDLGRVFAGAGFELSLVGGPVRDAFLGRRSADLDFTTDARPDDTVRLLKAWGDAHWEVG 105 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQ 132 +GTI + ++TT RS+ D R +V + D D RRDFT+NA+ Sbjct: 106 RDFGTIGARKKDVVVEVTTYRSESYDPDSRKPEVAYGDDLVGDLSRRDFTVNAMALRLPS 165 Query: 133 GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIK 192 D GL DL ++ G A +D LR++R RF A + D + A Sbjct: 166 LDFADPHDGLTDLAAGVLRTPGTAERSFSDDPLRMMRAARFAAQL-RMRVAPDVVAAMTA 224 Query: 193 AKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEA 252 + I+S+ER+ E+ K L A +P+ + + + G+ + + ++ + L ++ + Sbjct: 225 MAARIAIVSAERVRVELEKTLLAADPVAGLRLLVDTGLAEHVLPELPALQL-EIDEHHRH 283 Query: 253 EQVFEWKIDSL 263 + V+E + L Sbjct: 284 KDVYEHSLTVL 294 >gi|302342303|ref|YP_003806832.1| poly(A) polymerase [Desulfarculus baarsii DSM 2075] gi|301638916|gb|ADK84238.1| poly(A) polymerase [Desulfarculus baarsii DSM 2075] Length = 425 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 132/323 (40%), Gaps = 23/323 (7%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 D D + +L L++ + +VGG VRD L+ +D D+ T P +V +F +R Sbjct: 33 DPDALKVLYRLHRAGFTAYLVGGGVRDLLLGKKPKDFDVGTDARPGQVRNLFRNSRV--- 89 Query: 72 PTSISYGTIKIIC-RKKYFDITTLR--SDLITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + +++ R K +++T R SD D D+LRRD TINA++ Sbjct: 90 -IGRRFRLVQVFFQRNKIVEVSTFRRASDPDEDLVLQANNTFGSPAEDALRRDLTINAMF 148 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + ++DYVGG++DL+ I+ +GD R D +R++R R A G + + S+ Sbjct: 149 YNIADFSIVDYVGGMDDLKAGLIRAVGDPKIRFHRDPVRVMRAVRHAARTGFQ-LTSETR 207 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLD--- 244 A + L + S RI E+ + L + + I + +++ Sbjct: 208 QAVEDFRCELAVCPSSRIRDELMRDLAGGAAAPWLELAHQTKILYSLLPGLEKYYGQPDS 267 Query: 245 --------QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI 296 L+ + +A D+++ L + L+ ++ F R R I Sbjct: 268 HARAQAACNLAAIDQAVAAGAPPDDAVIVCAFLWPALE---ALAASQPFEEGRAGRGQWI 324 Query: 297 SFFNCNFNQKTLSIPEIKKLFYL 319 F + T + K++ Sbjct: 325 GFVRDALPELTAPVAFAKRVIER 347 >gi|78484585|ref|YP_390510.1| metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] gi|123556038|sp|Q31J37|CCA_THICR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|78362871|gb|ABB40836.1| metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] Length = 416 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 39/315 (12%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD+L+N+ V D D + P ++ K P + T + Sbjct: 2 KTYLVGGAVRDALLNIPVYDHDWVVVGATPQDMLEQGFSQVGKDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYA--KVVF--TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y +V F T + D +RRD TINA+ D +G+++D GG Sbjct: 57 ---EYALARTERKSGQGYHGFEVSFDPTVTLEDDLIRRDLTINAMAQDAEGQIVDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL ++ ++ + +A ED LR+LR RF A ++ L+ S+ A L Sbjct: 114 QDLADKVLRHVSEA---FAEDPLRVLRVARFAAKLSAFGFTLAPETAALMKSMSASGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E+ K L + P + + +F +LD L V + E+ Sbjct: 171 ALTPERVWQEVVKALNTQTPSVFFEVLDHVNALSILFP-----ALDALKGVQQPEK-HHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 + D+ + ++++ L ++ + + K L+ + + Sbjct: 225 EGDAWVHTMMVLDASAA-----------LSNDVSVRFAALVH--DLGKGLTPKALWPKHH 271 Query: 319 LYGDKVMIAKLKIFL 333 + + + Sbjct: 272 GHEKAGVPLVAALCQ 286 >gi|121730098|ref|ZP_01682501.1| tRNA nucleotidyltransferase [Vibrio cholerae V52] gi|147674076|ref|YP_001217948.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio cholerae O395] gi|262167278|ref|ZP_06034988.1| tRNA nucleotidyltransferase [Vibrio cholerae RC27] gi|172047582|sp|A5F5I2|CCA_VIBC3 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|121628155|gb|EAX60685.1| tRNA nucleotidyltransferase [Vibrio cholerae V52] gi|146315959|gb|ABQ20498.1| tRNA nucleotidyltransferase [Vibrio cholerae O395] gi|227014338|gb|ACP10548.1| tRNA nucleotidyltransferase [Vibrio cholerae O395] gi|262024253|gb|EEY42944.1| tRNA nucleotidyltransferase [Vibrio cholerae RC27] Length = 403 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 146/359 (40%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVSLEDDLLRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIVQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ + A + S +R+ + K ++ P L+ Sbjct: 228 TGIHTLM---------VAKQAAQLSDSLPVRFA----AQVHDLGKGVTPPSEWPSHKLHC 274 Query: 322 D------KVMIAK---------LKIFLALHYNNLTHQDTCF---ILQVLSDIIHWKKPL 362 + + + L + + ++N+ D L+VL + W+KP Sbjct: 275 HTGLNIIESLCERIRVPNEFRDLALAVCAQHSNIHRADELKPTTKLKVLGLLDVWRKPE 333 >gi|254282300|ref|ZP_04957268.1| multifunctional CCA protein [gamma proteobacterium NOR51-B] gi|219678503|gb|EED34852.1| multifunctional CCA protein [gamma proteobacterium NOR51-B] Length = 371 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 146/389 (37%), Gaps = 30/389 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L++ + + D + + ++ + P + T Sbjct: 2 QVYKVGGAVRDQLLDYAFHETDWVVVGATAEHMLEQGFTQVGRDFPVFLHPDT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y D + D RRD TINA+ ++G+VID GG Sbjct: 55 -KDEYALARTERKSGRGYHGFEVHADPSVTLEEDLQRRDLTINAMAMSEKGEVIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+ R ++ + +ED LR+LR RF A Y N ++ L+ ++ + L Sbjct: 114 RDLQARVLRHVSPH---FVEDPLRVLRVARFAARYHHLNFKVASETTDLMRTLVTEGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS ERIW E + L K+P + + G +++ D+ +D+L + W Sbjct: 171 HLSVERIWVETERALAEKSPEVFFRVLDSCGALEQLIPDIGVADIDRLKNASQ------W 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 + R+ L+S D + ++F P+ + + + + E+ +L Sbjct: 225 TSRTECRWAALLSQLDATRAEHINRQFKTPKRVAALSAAIIKHRSSIDSNDASELLRLLK 284 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPG 378 F H + + ++ D+ G+ G Sbjct: 285 ALDALRREEPFSGFCETVAALNGHHPAAYAPA--ERLRLVANSARSISARDITNEGLS-G 341 Query: 379 KKVGNILVHCKQEWINSSFQLSQEDLHHL 407 ++G + H + I +SQE L Sbjct: 342 PEIGAAIAHRQIAAIE-DVLVSQEGLEAR 369 >gi|145637482|ref|ZP_01793140.1| hypothetical protein CGSHiHH_03937 [Haemophilus influenzae PittHH] gi|145269288|gb|EDK09233.1| hypothetical protein CGSHiHH_03937 [Haemophilus influenzae PittHH] Length = 416 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLGLPVKDRDWIVVGTNPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+ + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALHGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|116748126|ref|YP_844813.1| polynucleotide adenylyltransferase region [Syntrophobacter fumaroxidans MPOB] gi|116697190|gb|ABK16378.1| Polynucleotide adenylyltransferase region [Syntrophobacter fumaroxidans MPOB] Length = 888 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 87/413 (21%), Positives = 150/413 (36%), Gaps = 35/413 (8%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 L K+ VGG VRD L+ S DIDI R +++ + T Sbjct: 473 KLAKDLGMKAYAVGGFVRDLLLRRSNLDIDIVVEGDGIEFARTYAREHGIRCRFHKKFNT 532 Query: 80 IKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----DQQGK 134 +I + D+ + R + +V K D RRDFTIN L + G+ Sbjct: 533 AVLIFPDDRRVDVASARFEYYQYPAALPIVEFSSLKMDLYRRDFTINTLALALNPGEFGQ 592 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKA 193 +ID+ GG DL+++TI+ + + ++ED RILR RF +G + + L+ + Sbjct: 593 LIDFFGGQRDLKDKTIRVLHN--LSLVEDPTRILRAIRFEQRFGFRIGKQTVALIRNAVR 650 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKE-----IFLDVQEISLDQLSQ 248 L+ L R+ EI ++ +PL + M ++ +F E +L + Sbjct: 651 MGLLQKLGGRRLLHEIQLIMVEDDPLPPLRRMNEFAVWPVLSANILFDQKLEDLFVRLRE 710 Query: 249 VIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ 305 V+ ++ E + + L S + + R + Sbjct: 711 VVSWHRLSFLDEPLERWWVYMLGLFSGLAAADVEDACGRLQFTAGQRERI---------- 760 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALH--------YNNLTHQDTCFILQVLSDIIH 357 + + L + + IF AL + QD V Sbjct: 761 -AWAYRTVSGLLWGFFPAAEHKPSAIFRALQPFKPEELVFMMAKAQDETPRRAVSHYFHR 819 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 ++ L G D+ + G+PPG IL +N + QE+L +L + Sbjct: 820 YRHVSTELKGRDLKEMGVPPGPIYRVILDELLDARLNGEVKDRQEELAYLRER 872 >gi|302342642|ref|YP_003807171.1| polynucleotide adenylyltransferase region [Desulfarculus baarsii DSM 2075] gi|301639255|gb|ADK84577.1| Polynucleotide adenylyltransferase region [Desulfarculus baarsii DSM 2075] Length = 893 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 79/429 (18%), Positives = 162/429 (37%), Gaps = 34/429 (7%) Query: 3 SIVQHK----WFHDSDLINILSLLNKGE-------DKSCIVGGAVRDSLMNLSVQDIDIA 51 ++HK H+ ++++L + + +VGG+VRD + DID+ Sbjct: 456 QTIRHKNIANLLHERLPKPVVTILQQMGKVGDDLGEDVYLVGGSVRDLFLRSDHLDIDVV 515 Query: 52 TTILPDRVMRIFSKTRYKV-IPTSISYGTIKIICR-KKYFDITTLRSDLITDGRYAKVVF 109 R F++ R + + T + T K++ D+ T R + VV Sbjct: 516 VEGDAIEFARAFAQGRDDLRLRTHKKFNTAKLLFDSGLTMDLATARLEYYMSPAALPVVE 575 Query: 110 TRDWKADSLRRDFTINALYADQQGK----VIDYVGGLNDLRNRTIKFIGDAHHRILEDYL 165 K D RRDFTIN + G+ +ID+ + D++ + I+ + + +ED Sbjct: 576 HSSVKLDLYRRDFTINTMAVRLNGRQFGLLIDFFEAMRDIKEKVIRVLHN--LSFVEDPT 633 Query: 166 RILRFFRFFAHYGEKNID-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVH 224 R+ R RF +G + ++ L+ + + L+ R++ E+ +LE ++ AI Sbjct: 634 RVFRAIRFEQRFGFRIGKLTEALIKNAIKIDAFRRLTGSRLFGELKHILEEESVTPAIER 693 Query: 225 MYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK----IDS-----LLRFIVLISWQDK 275 + + + +Q ++ QL + +AE+ W ID LL F+ L D+ Sbjct: 694 LNEFKLLRVFHPALQ-LTAKQLELLDQAEETLAWYRLSFIDKPLRRWLLYFLALADGLDE 752 Query: 276 KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLAL 335 + + + ++ ++R + + + + + L + Sbjct: 753 QQMTELCQRLGFAPKLREEITEMRAKALRCVNVLQRRAARPSQTFELLRPLGLEFQLLVM 812 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 + + V + + L G D+ G PG IL ++ Sbjct: 813 AKTSKDYAKKA----VSQYLTTMVRVRPELGGQDLKAMGYLPGPLYKQILDTLLAARLDG 868 Query: 396 SFQLSQEDL 404 Q Q+++ Sbjct: 869 QVQTRQDEI 877 >gi|254429964|ref|ZP_05043671.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Alcanivorax sp. DG881] gi|196196133|gb|EDX91092.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Alcanivorax sp. DG881] Length = 410 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 83/413 (20%), Positives = 154/413 (37%), Gaps = 69/413 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+ L V + D + P+ + + K P + T + Sbjct: 2 KVYLVGGAVRDSLLGLPVTEKDWVVVGATPEEMEANGFRPVGKDFPVFLHPDTQE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F + D +RRD TINA+ + G+V+D G Sbjct: 57 ---EYALARTERKSGHGYGGFTFHAASDVSLEEDLIRRDLTINAMARSEGGEVVDPFHGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL+ R ++ + A ED LR+LR RF A Y D+ L+ + L Sbjct: 114 IDLKARLLRHVSPA---FAEDPLRVLRVARFAARYHWLGFRVADDTLTLMRQLSDSGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W E ++ L P ++ G +++F ++ L V + E Sbjct: 171 YLVPERVWKETSRALMEPAPQVFFQVLHVCGALEKLFPELAA-----LDGVPQPE-AHHP 224 Query: 259 KIDSLL------------------RFIVLISWQDKKSI-------------------LSM 281 ++D+L+ R+ VL K ++ Sbjct: 225 EVDTLVHQWLCLEMAAKLKLPLTARYAVLCHDLGKAKTPQAEWPRHIAHEIRSARLSRTL 284 Query: 282 AKKFSLPREIRY--FLISFFNCNFNQKTLSIPE-IKKLFYLYGDKVMIAKLKIFLALHYN 338 +K+ +PR+ L++ ++ + ++ P+ + KLF +L+ FL Sbjct: 285 SKRLRVPRDAADTAALVAEYHTHCHRALELKPQTVWKLFKALDVIRRPERLEDFLGACEA 344 Query: 339 NLTHQD--TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 + + + + + L + + GI G +G+ + + Sbjct: 345 DARGRTGFEDRDYPQANYLRGAAQALQSVDVAALRAQGIE-GPALGDAIEKAR 396 >gi|332886436|gb|EGK06680.1| hypothetical protein HMPREF9456_00554 [Dysgonomonas mossii DSM 22836] Length = 478 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 83/447 (18%), Positives = 173/447 (38%), Gaps = 57/447 (12%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP--TS 74 I + ++ + +GG VRD + + +DIDI T + + +K + Sbjct: 21 TISRVADEMNLECYAIGGYVRDIFLRRASKDIDIVTIGKGIELAQAVTKALGRKAKLSVF 80 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA----D 130 ++GT +I + + R + +V + D RRDFTINAL D Sbjct: 81 KNFGTAQIKYKDTEIEFVGARKESYNRDSRKPIVEDGTLEDDQNRRDFTINALAICLNKD 140 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 + G+++D GGL D+ + TI+ D +D LR+LR RF + G +I+ A Sbjct: 141 RFGELLDPFGGLKDMDSLTIRTPLDPDITFSDDPLRMLRAIRFSSQLG-FDIEPKTFDAI 199 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 + K ++I+S ERI E+NK++ + P + + G+ IF ++ + + + + Sbjct: 200 SRNKDRIEIISRERIIDEVNKIVLSPKPSVGFLQLDQTGLLSIIFPELVALKGAETKEGV 259 Query: 251 EAEQVFEWKI-----------DSLLRFIVLISWQDKKSILS------------------- 280 + F + + LR+ ++ K + Sbjct: 260 GHKDNFYHTLVVLDNISKKTDNLWLRWSAILHDIAKPATKRWDNKFGWTFHNHNFIGEKM 319 Query: 281 ---MAKKFSLP-REIRYFLISFFNCNFNQKTLSIPEI-----KKLFYLYGDKVMIAKLKI 331 + ++ LP E ++ + + L EI ++L + GD + + + Sbjct: 320 IPGIFRRMKLPLNEKMKYVQKMVTLHMRPQVLVDEEISDSAVRRLLFEAGDDI-DDLMTL 378 Query: 332 FLALHYNNLTHQDTCFILQV---------LSDIIHWKKPLFPLTGDDVVKY-GIPPGKKV 381 A + + ++ + + + P+ G+++++ G+ PG +V Sbjct: 379 CEADITSKNPDKVRRYLRNFEIVRQKLKDIEEKDQVRNFQPPIKGEEIMEMFGLGPGVEV 438 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLL 408 G + K ++ + ++ L Sbjct: 439 GRLKASIKDAILDGVIPNEYDAAYNYL 465 >gi|238028856|ref|YP_002913087.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia glumae BGR1] gi|237878050|gb|ACR30383.1| Multifunctional CCA protein [Burkholderia glumae BGR1] Length = 415 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 137/351 (39%), Gaps = 37/351 (10%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGA+RD+L+ L VQD D + P+++ + K P + T + Sbjct: 4 YVVGGAIRDALLGLPVQDRDYVVVGATPEQLAARGFRPVGKDFPVFLHPQTHE------- 56 Query: 89 FDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQ------GKVIDY 138 + R++ T Y F D RRD TINA+ + G++ID Sbjct: 57 -EYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREIDPDGRITGELIDP 115 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKG 196 GG DL + + +G A +ED +RILR RF A + + + + L + + A Sbjct: 116 FGGRADLAAKRFRHVGPA---FVEDPVRILRVARFAARFADFTVAPETLALMREMVAAGE 172 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 + L ER+W E+++ L P + G I +V D L V + + Sbjct: 173 VDALVPERVWQEVSRGLMEAKPSRMFAVLRECGALARILPEV-----DALFGVPQRAD-Y 226 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC---NFNQKTLSIPEI 313 ++D+ + +++I K S+ +F+ + + + S+ + Sbjct: 227 HPEVDTGVHVMMVID-HAAKHAYSLPVRFAALTHDLGKATTPAEVLPRHIGHEGRSVDLL 285 Query: 314 KKLFYLYGDKVMIAKLKIFLALHYNNLTH---QDTCFILQVLSDIIHWKKP 361 + L L + +A + NL ++++L +KP Sbjct: 286 RPLCERLRVPNECRDLALLVAREHGNLHQVMSMSAAALVRLLERADALRKP 336 >gi|312881707|ref|ZP_07741484.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370597|gb|EFP98072.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio caribbenthicus ATCC BAA-2122] Length = 405 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 139/347 (40%), Gaps = 33/347 (9%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD+L+N+ V D D + P ++ K P I T + Sbjct: 4 YLVGGAVRDTLLNIKVSDQDWVVVGSSPQELLAAGYLPVGKDFPVFIHPKTKQ------- 56 Query: 89 FDITTLRSDLITDGRYAKVV----FTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + + + D RRD TINA+ G++ID G D Sbjct: 57 -EYALARTERKISSGHTGFECFFSPSVTLEEDLSRRDLTINAMAQHLDGEIIDPFKGRRD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDG--LVASIKAKKGLKIL 200 L++R ++ + DA +ED LRILR RF A NI + L+ ++ LK L Sbjct: 116 LKDRQLRHVSDA---FIEDPLRILRVARFHAKLFHLGFNIAPETLLLMKNMVKAGDLKTL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ERIW E NK L NP + + G I + LD L V + EQ + +I Sbjct: 173 TPERIWQEWNKSLATPNPQIFLSTLKECGALAVILPE-----LDALFGVPQPEQ-WHPEI 226 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 D+ + + L++ Q S +F+ I+ + K +K + L Sbjct: 227 DTGIHTL-LVAEQAAMLSESPVVRFAAQVHDLGKGITPKEEWPSHKRHCHTGLKLIKELC 285 Query: 321 GDKVMIAKLKIFLALHYN------NLTHQDTCFILQVLSDIIHWKKP 361 G + + K + + L++L+ W+KP Sbjct: 286 GRVCIPNEFKELALMVCEHHSNIHRASELKASTKLKILNKCDVWRKP 332 >gi|256370847|ref|YP_003108671.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidimicrobium ferrooxidans DSM 10331] gi|256007431|gb|ACU52998.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidimicrobium ferrooxidans DSM 10331] Length = 462 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 85/444 (19%), Positives = 157/444 (35%), Gaps = 49/444 (11%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQ-DIDIATTILPDRVMRIFSKTRYKVI 71 L + + ++ + +VGG VRD+L+ + D+D T P+ ++ I Sbjct: 11 EALRPLAARFDERQRHLYLVGGVVRDALLGIEPNGDVDATTDATPEEIVEIVRPVATHFN 70 Query: 72 PTSISYGTIKIICRKKYFDITTLRSDLITDG-RYAKVVFTRDWKADSLRRDFTINALYAD 130 T + +GT+ ++TT R + R V F D LRRDFT+NA+ + Sbjct: 71 LTGLRFGTVAFHYHGVPLEVTTHRGEAYDSSTRKPTVHFVSALAEDLLRRDFTVNAMAVE 130 Query: 131 ---QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +ID GG+ DL R ++ D +D LR+LR RF A + + Sbjct: 131 VTSDDPTLIDPFGGMEDLLARRLRTPMDPRRSFSDDPLRMLRCARFIARL-DLEPQRALV 189 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 A + L+++S ERI E+++LL +P + + + + E ++ + L+Q Sbjct: 190 DAVHELAPRLEVVSRERIRDELSRLLVVPDPSKGLWFLVDTPLAAEFLPELPALRLEQ-D 248 Query: 248 QVIEAEQVFEWKID----------------------SLLRFI----VLISWQD---KKSI 278 + + V I R I V + D + Sbjct: 249 PIHHHKDVLAHTIAVTASCSPRLRLRLAALLHDIGKPATREIGPNGVSFHFHDVVGARMA 308 Query: 279 LSMAKKFSLPREIRYFLISFFNCNFNQKT----LSIPEIKKLFYLYGDKVMIAKLKIFLA 334 + ++ P ++ + + T S +++ G+ + Sbjct: 309 RRILRELRYPNDLVDDVARLVELHLRFHTYAQGWSDAAVRRYVRDAGELLEDLNELTTCD 368 Query: 335 LHYNNLTHQDTCFILQV--------LSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNIL 385 N + L++ + P+ G +V++ IPPG VG + Sbjct: 369 ATTRNERRRRMFAERMATFEERARELAERDALRARRPPIDGLEVMRILEIPPGPAVGRAM 428 Query: 386 VHCKQEWINSSFQLSQEDLHHLLR 409 I+ E LL Sbjct: 429 RFLTDLTIDEGLNDPDEARRRLLE 452 >gi|238026306|ref|YP_002910537.1| poly(A) polymerase [Burkholderia glumae BGR1] gi|237875500|gb|ACR27833.1| Poly(A) polymerase [Burkholderia glumae BGR1] Length = 525 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 38/250 (15%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L+ ++ +D D+AT P V R+F + R Sbjct: 76 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRRARL- 134 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS---------------------------DLITD- 101 + + + ++ +++T R+ D T Sbjct: 135 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPADAPASAPADAAPPRRMKRDELDRRTHA 191 Query: 102 ----GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDA 156 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD Sbjct: 192 VDASGRVLRDNVWGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADVRARLLRMIGDP 251 Query: 157 HHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAK 216 R ED +R+LR RF A G +I+ + + + R++ E+ KLL + Sbjct: 252 ATRYREDPVRMLRVVRFAAKLG-FDIEPHTREPIQPLADLINNVPAARLFDEMLKLLLSG 310 Query: 217 NPLNAIVHMY 226 + L + + Sbjct: 311 HALACLRQLR 320 >gi|289522442|ref|ZP_06439296.1| polyA polymerase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504278|gb|EFD25442.1| polyA polymerase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 876 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 80/417 (19%), Positives = 158/417 (37%), Gaps = 23/417 (5%) Query: 8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 W + L + + K+ +VGG VRD L+ QD+DI ++ + Sbjct: 458 PWITQT-LRRLGRRAEEMSLKAYVVGGFVRDLLLGKENQDLDIVIEGDALSFIKSWEADG 516 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + Y T I+ + D+ T R + V K D RRDFT+N+ Sbjct: 517 CR-VAVHERYRTGTIVFPGGRKIDVATARREFYEYPVALPKVVGDSLKHDLYRRDFTVNS 575 Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 + G +IDY GG DL+ R ++ + + +ED R+LR R G + Sbjct: 576 MAISINGTSWGTLIDYFGGRRDLQKRQLRVLHN--LSFVEDPTRVLRGLRLKHRLGFEFE 633 Query: 183 D-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ-- 239 D + L+ S L +LS R+ +E+ + + ++ M + GIF+ +F ++ Sbjct: 634 DNTVRLIKSAIKGGLLALLSGTRVKNELKLIFLEERAYPIVLEMVHLGIFEALFPGIKID 693 Query: 240 EISLDQLSQVIEAEQVFEWKID------SLLRFIVLISWQDKKSILSMAKKFSLPREIRY 293 L + ++ + + + L ++ + + K L + R Sbjct: 694 RNCLRVIRRLSFFLRRIHYDLPDMGDKVWLAFLAAVLFSSAEWVQEATIDKLHLSKPDRE 753 Query: 294 FLISFFN-CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352 + N + + I+ +Y + + AL + T Q +L Sbjct: 754 AVERALNDLGTAENAVGGRVIRSHEEIYF---FLEDVPYVTALFWAAATEQWRVRRRILL 810 Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 + + L G D+++ G P G +G IL + + + ++++ + + Sbjct: 811 -FLTRLHRIHPILMGRDLIELGYPKGALIGKILDELLRARLRGEVETREDEIRWIKK 866 >gi|148984905|ref|ZP_01818158.1| predicted S-transferase [Streptococcus pneumoniae SP3-BS71] gi|147922927|gb|EDK74043.1| predicted S-transferase [Streptococcus pneumoniae SP3-BS71] gi|332073894|gb|EGI84372.1| poly A polymerase head domain protein [Streptococcus pneumoniae GA41301] gi|332200997|gb|EGJ15068.1| poly A polymerase head domain protein [Streptococcus pneumoniae GA47901] Length = 325 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 148/333 (44%), Gaps = 13/333 (3%) Query: 81 KIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ G+++D Sbjct: 1 MVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDL 60 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL + ++ +G A R ED LRI+R FRF A G ++ + A L+ Sbjct: 61 FHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTLTPLLE 119 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +S ER + E +KLL A + M + + D+ S D+L+++ + E F + Sbjct: 120 KISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDLETDFTF 177 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 + S + L+ + ++ S K + R+ + ++ + K+ Y Sbjct: 178 E-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL--SKRDCY 234 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377 + +++ + A + I + + K + GD ++K YG P Sbjct: 235 RFDIDLLLQAENLRQA----QGKEVNPQAITEKYQSLTIHDKKEIQINGDILIKEYGYQP 290 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G +G IL + ++ + ++E +H LR+ Sbjct: 291 GPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323 >gi|289663916|ref|ZP_06485497.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 410 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 78/409 (19%), Positives = 150/409 (36%), Gaps = 63/409 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ D D + ++ K K P + + Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVGADQAQMEAQGFKPVGKDFPVFLHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G++ D G Sbjct: 54 SGEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGELFDPYNG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + DL+ R ++ +G A +ED +R+LR RF A ++ L+ + A L Sbjct: 114 VRDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------LDQLSQV 249 L ER+W E+ + L P + +++ + I ++ + ++ Sbjct: 171 DSLVPERVWQELRRALTCAQPSALLRTLHDTAALRVILPEIDALYGVPQRAEFHPEVDTG 230 Query: 250 IEAEQVFEWKI-----DSLLRFIVLISWQDK-------------------KSILSMAKKF 285 I E V + D+L+ F L K + ++ ++ Sbjct: 231 IHQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEEWPRHVMHEQRGVAPLQALCERL 290 Query: 286 SLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKI-FLALHYN 338 +P++ R + + N + ++ E+ + IA+L + A Sbjct: 291 KVPQDHRRLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVCEADKRG 350 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 L ++ + ++ + D+ G+ G ++G L Sbjct: 351 RLGSEEAAYPQG--EELKRLHAAALAINARDLAAEGLQ-GPQIGEALTK 396 >gi|323142889|ref|ZP_08077600.1| multifunctional CCA protein [Succinatimonas hippei YIT 12066] gi|322417317|gb|EFY07940.1| multifunctional CCA protein [Succinatimonas hippei YIT 12066] Length = 427 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 144/355 (40%), Gaps = 47/355 (13%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGA+RD L+ + D D + P ++ + P I T + Sbjct: 4 YLVGGAIRDQLLKIDGADRDHVVVGSTPQEMLDLGFTQVGNDFPVFIHPKTGE------- 56 Query: 89 FDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ Y V F +D + D RRD TINA+ D+ GK+ID GG ND Sbjct: 57 -EYALARTEKKQGHGYTGFVCSFDKDVTLEEDLQRRDLTINAMAMDKNGKIIDPYGGQND 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAH---YGEKNIDSD-GLVASIKAKKGLKIL 200 L NR ++ + +ED LR+LR RF A G D L+ I L L Sbjct: 116 LNNRILRHVSP---SFIEDPLRVLRVARFAAKLHYLGFYIADETISLMKEITESGELSSL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 + ERIW E K L +P + + G K IF +V + + + + +I Sbjct: 173 TPERIWIETQKALNTSDPQIFFIILRKIGALKIIFPEVDALF------GVPGPKRWHPEI 226 Query: 261 DSLLR-FIVL----ISWQDKKSILSMA-----KKFSLPREIRYFLISFFNCNFNQKTLSI 310 DS + F+ L + D K+ +M K + E + + N L + Sbjct: 227 DSGIHTFMTLRRISLETSDPKTRFAMLCHDLGKALTPKNE--------WPHHHNHCALGV 278 Query: 311 PEIKKLFYLY---GDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +K+L D +A + +F + ++L I+ +L ++ W++P Sbjct: 279 EPLKQLCKRLKVPKDYEELAYIVVFHHSYMHHLYRNGAEGIVNLLDELDAWRRPQ 333 >gi|332199601|gb|EGJ13676.1| poly A polymerase head domain protein [Streptococcus pneumoniae GA41317] Length = 325 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 148/333 (44%), Gaps = 13/333 (3%) Query: 81 KIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ G+++D Sbjct: 1 MVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDL 60 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL + ++ +G A R ED LRI+R FRF A G ++ + A L+ Sbjct: 61 FHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTLTPLLE 119 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +S ER + E +KLL A + M + + D+ S D+L+++ + E F + Sbjct: 120 KISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDLETDFTF 177 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 + S + L+ + ++ S K + R+ + ++ + K+ Y Sbjct: 178 E-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL--SKRDCY 234 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377 + +++ + A + I + + K + GD ++K YG P Sbjct: 235 RFDIDLLLQAENLRQARGKEV----NPQAITEKYQSLTIHDKKEIQINGDILIKEYGYQP 290 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G +G IL + ++ + ++E +H LR+ Sbjct: 291 GPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323 >gi|148653930|ref|YP_001281023.1| poly(A) polymerase [Psychrobacter sp. PRwf-1] gi|148573014|gb|ABQ95073.1| poly(A) polymerase [Psychrobacter sp. PRwf-1] Length = 719 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 14/313 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I +++ LNKG + IVGG VRD+L+ LS +D D T P V +F K R ++I Sbjct: 20 IIEVIATLNKGGFDAYIVGGGVRDTLLGLSPKDFDAVTDARPHEVKDLFGK-RCRII--G 76 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + + ++ T R+ +DG + D + D RRDF+INA+Y Sbjct: 77 RRFQLAHVYSGRDMIEVATFRAPPTGDAHATSDGMIVRDNVWGDIEQDFARRDFSINAMY 136 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 +G V D+ L+D++N+T++ +G A RI ED +R+LR RF A G + + Sbjct: 137 YQPLKGVVHDFCNALDDIKNKTLRLLGHAPLRIEEDPVRLLRALRFKAKLGFEFDEELSN 196 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF---LDVQEISLD 244 L +S R++ E K+ + + ++ G + + ++ Sbjct: 197 QFHDDNWALLDQVSPHRLYDESQKMFTGGYLVPLLPLLFEYGAIRHLIIYPPQAPTRLVN 256 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 Q++ + I+ + L+ W++ L+ KK ++P + + Sbjct: 257 QVAINTDKRIALGKSINPAFFYAALL-WENYLHQLAKFKKKNMPFHDAQLQAASKVIDRQ 315 Query: 305 QKTLSIPEIKKLF 317 + +IP + F Sbjct: 316 RVKTAIPRFAEQF 328 >gi|332971517|gb|EGK10467.1| multifunctional CCA protein [Kingella kingae ATCC 23330] Length = 413 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 79/413 (19%), Positives = 150/413 (36%), Gaps = 58/413 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD+L+ +VQD D + ++ K P + T + Sbjct: 2 QIYLVGGAVRDTLLGKNVQDRDWVVVGAEASTLLAQGFTAVGKDFPIFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y D + D RRD TINA+ D+ G +ID GG Sbjct: 57 ---EYALARTERKTGKGYTAFAVHADASVTLEQDLQRRDLTINAMAQDEHGSIIDPFGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAKKGLKILS 201 DL+ ++ + A ED +RILR RF A YG ++ L+ + A + L Sbjct: 114 RDLQQGILRHVSPA---FAEDPVRILRTARFAARYGFAIAPETMQLMRDMVAAGEVDALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE-------- 253 +ER+W E K L P I + + G + +V+ + E Sbjct: 171 AERVWQEFAKGLMECEPRKMIEVLRDCGALAILLPEVEALFGVPQHADYHPEVDSGEHTL 230 Query: 254 ----QVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSLPRE 290 + + + R+ L+ K + I ++ +++ +P+ Sbjct: 231 LVLQRAADLNLSLAERYAALLHDLGKALTPHDVLPKHIGHDRRGVEPIRAVNQRWRVPKH 290 Query: 291 IRYF--LISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 L+ F+ F+ Q + I +K+ + + A L + LA L Sbjct: 291 CAELAELVCAFHIRFHQIGQIKQASKIIKLLKECDAFRRPERVQAALNVCLADQQGRLGK 350 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 Q++ + I+ + ++ + ++ + + + + Sbjct: 351 QNSPY--PQREHIMALIAAAQQINAGEIAQQYAKQPAQISEKIDEARAMQVKA 401 >gi|51892192|ref|YP_074883.1| putative RNA nucleotidyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51855881|dbj|BAD40039.1| putative RNA nucleotidyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 457 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 90/439 (20%), Positives = 173/439 (39%), Gaps = 61/439 (13%) Query: 17 NILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSIS 76 IL+ L ++ +VGGAVRD L+ L QD D+AT+ P + +F + + + + Sbjct: 31 TILARLTGAGHEAVVVGGAVRDLLLGLVPQDWDLATSARPAELQALFPE--GRAVGAARE 88 Query: 77 YGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVI 136 GT+ I ++IT R+ + D RRDFTI+A+ A +G++I Sbjct: 89 TGTLLIPGDGTTYEITPYRAGR--------------LEGDLARRDFTIDAMAATPEGRLI 134 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKG 196 D +GG DL ++ G R+ ED LR+LR R A + + +D A Sbjct: 135 DPLGGRRDLAAGVVRACGRPEDRLAEDPLRMLRAVRLAAQF-DLELDPALARAIAALAPR 193 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L+ ++ ERI +E +LL P + + G+ + ++ E+ + ++ A V+ Sbjct: 194 LQAVAPERIGAEFGRLLVTDRPAWGMQRLRELGLLHQFAPELLEMVGVEQNR-YHAFPVW 252 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLP---------------------------- 288 E + +L + + + +AK L Sbjct: 253 EHSLMALALVPPALHLRLAALLHDVAKPRCLSVDADGERHFYGHEAVGAELADRLLRRLR 312 Query: 289 --REIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ 343 R + + + ++ ++++ G + + +++ A + + Sbjct: 313 FDNATREKAVHLVRRHMDLHLDGPVTDAALRRMVRRIGVEHLDDLVQLRRADRLASGKRE 372 Query: 344 DTC---------FILQVLSDIIHWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWI 393 I +VL++ K + G DV+ +G PG VG +L +E + Sbjct: 373 GDLGPDTMAILDGIRRVLAEDAALKVTDLAVDGHDVMAAFGRGPGPYVGQVLEALLEEVL 432 Query: 394 NSSFQLSQEDLHHLLRKLI 412 + +E L L+++ Sbjct: 433 DRPELNRREALLRRLQEMA 451 >gi|188575215|ref|YP_001912144.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519667|gb|ACD57612.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 713 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 80/415 (19%), Positives = 149/415 (35%), Gaps = 75/415 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ D D + R+ K K P + + Sbjct: 305 KIYLVGGAVRDALLGQPAGDRDWVVVGADQARMEAQGFKPVGKDFPVFLHP--------R 356 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G+ D G Sbjct: 357 SGEEYALARTERKSGRGYRGFVVDADPLVTLEEDLLRRDFTINAIARDEDTGEFFDPYNG 416 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL+ R ++ +G A +ED +R+LR RF A ++ L+ + A L Sbjct: 417 ARDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGEL 473 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L ER+W E+ + L P + +++ + I ++ D L V + Q F Sbjct: 474 DSLVPERVWQELRRALTCAQPSAFLRTLHDTDGLRAILPEI-----DALYGVPQRAQ-FH 527 Query: 258 WKIDSLLR-------------------FIVLISWQDK-------------------KSIL 279 ++D+ + F L K + Sbjct: 528 PEVDTGIHQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEQWPRHIMHEQRGVAPLQ 587 Query: 280 SMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKI-F 332 ++ ++ +P++ R + + N + ++ E+ + IA+L + Sbjct: 588 ALCERLKVPQDYRQLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVC 647 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 A L ++ + +++ + D+ G+ G ++G L Sbjct: 648 EADKRGRLGSEEAAYPQG--AELKRLHAAASAINARDLAADGLQ-GPQIGEALTK 699 >gi|297570022|ref|YP_003691366.1| polynucleotide adenylyltransferase region [Desulfurivibrio alkaliphilus AHT2] gi|296925937|gb|ADH86747.1| Polynucleotide adenylyltransferase region [Desulfurivibrio alkaliphilus AHT2] Length = 885 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 79/407 (19%), Positives = 146/407 (35%), Gaps = 25/407 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L I + + + ++ VGG VRD L+ DID+ + ++ + Sbjct: 470 LRTIGEVAQERKYRAFAVGGFVRDLLLQEKNFDIDVVIEGDGMVFAKALAERLKGRVRVH 529 Query: 75 ISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----A 129 + T + D+ T R + V K D RRDFTINA+ Sbjct: 530 KKFKTAVVKLPDGLKVDVATARLEYYDYPAAMPTVELSSLKLDLYRRDFTINAMAIHLNP 589 Query: 130 DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLV 188 D G ++D+ NDL++ I+ + + +ED RI R RF G ++ L+ Sbjct: 590 DTFGTLVDFFNSQNDLKDHKIRVLHN--LSFVEDPTRIFRAIRFEQRMGFTIGQHTERLI 647 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----SL 243 + R + E+ +L +NPL AI M + + + ++ +L Sbjct: 648 KNAVRMNLFDRFFGYRFFGELKGILSEENPLPAIRRMADLHLLPFLHPRLKLEPRLTKNL 707 Query: 244 DQLSQVIEAEQVF---EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 ++ + Q+ E + L+ + L + + ++F +P R L+ Sbjct: 708 EESQAALAWYQLLYRDEPCRNWLVYLLALTVNLKRSELQDFCQRFEVPERNRQQLLGEKT 767 Query: 301 CNFNQKTL---SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 T+ ++P+ Y + L LA+ + + LS + Sbjct: 768 AAQQAATVLRRALPDSNSGIYHLLAGLGPEGLLYLLAISRKKAAKKAISLYVTELSQV-- 825 Query: 358 WKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 L G D+ G PG IL ++ + +E+L Sbjct: 826 ----RPELNGHDLKVLGYQPGPIFRQILDQLLDARLDGQVRNREEEL 868 >gi|329571706|gb|EGG53387.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Enterococcus faecalis TX1467] Length = 196 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 7/190 (3%) Query: 13 SDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIP 72 + ++ +N ++ VGG+VRD+L+N + D+DIAT+ P+ + +IF +T + Sbjct: 11 KEAAPVIREINAQGFEAYFVGGSVRDALLNKPIHDVDIATSAYPEEIKQIFKRT----VD 66 Query: 73 TSISYGTIKIICRKKYFDITTLRSDL-ITDGRYA-KVVFTRDWKADSLRRDFTINALYAD 130 I +GT+ ++ + +++TT R++ D R +V F R K D RRDFTINAL D Sbjct: 67 VGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDEVTFVRSLKEDLKRRDFTINALALD 126 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 G++ID G+ DL N+TI+ +G+ H R ED LR++R RF + + I+ L A Sbjct: 127 STGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQL-DFKIEEKTLAAI 185 Query: 191 IKAKKGLKIL 200 + L + Sbjct: 186 AEFHPLLDEI 195 >gi|153827651|ref|ZP_01980318.1| tRNA nucleotidyltransferase [Vibrio cholerae MZO-2] gi|149737871|gb|EDM52776.1| tRNA nucleotidyltransferase [Vibrio cholerae MZO-2] Length = 403 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 145/359 (40%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D RRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEDDLQRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ + A + S +R+ + K ++ P L+ Sbjct: 228 TGIHTLM---------VAKQAAQLSDSLPVRFA----AQVHDLGKGVTPPSEWPSHKLHC 274 Query: 322 D------KVMIAKLKIF-----LALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 + + ++++ LAL + + L+VL + W+KP Sbjct: 275 HTGLNIIESLCERIRVPNEFRDLALAVCAQHSNVHRADELKSATKLKVLGLLDVWRKPE 333 >gi|15642442|ref|NP_232075.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153820126|ref|ZP_01972793.1| tRNA nucleotidyltransferase [Vibrio cholerae NCTC 8457] gi|227082567|ref|YP_002811118.1| tRNA nucleotidyltransferase [Vibrio cholerae M66-2] gi|229507494|ref|ZP_04396999.1| tRNA nucleotidyltransferase [Vibrio cholerae BX 330286] gi|229512311|ref|ZP_04401790.1| tRNA nucleotidyltransferase [Vibrio cholerae B33] gi|229519447|ref|ZP_04408890.1| tRNA nucleotidyltransferase [Vibrio cholerae RC9] gi|229606999|ref|YP_002877647.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio cholerae MJ-1236] gi|254849570|ref|ZP_05238920.1| multifunctional CCA protein [Vibrio cholerae MO10] gi|255746882|ref|ZP_05420827.1| tRNA nucleotidyltransferase [Vibrio cholera CIRS 101] gi|262162047|ref|ZP_06031063.1| tRNA nucleotidyltransferase [Vibrio cholerae INDRE 91/1] gi|298500196|ref|ZP_07010001.1| tRNA nucleotidyltransferase [Vibrio cholerae MAK 757] gi|73619894|sp|Q9KPC6|CCA_VIBCH RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|254813702|sp|C3LQY9|CCA_VIBCM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|9657022|gb|AAF95588.1| tRNA nucleotidyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126509333|gb|EAZ71927.1| tRNA nucleotidyltransferase [Vibrio cholerae NCTC 8457] gi|227010455|gb|ACP06667.1| tRNA nucleotidyltransferase [Vibrio cholerae M66-2] gi|229344136|gb|EEO09111.1| tRNA nucleotidyltransferase [Vibrio cholerae RC9] gi|229352276|gb|EEO17217.1| tRNA nucleotidyltransferase [Vibrio cholerae B33] gi|229354999|gb|EEO19920.1| tRNA nucleotidyltransferase [Vibrio cholerae BX 330286] gi|229369654|gb|ACQ60077.1| tRNA nucleotidyltransferase [Vibrio cholerae MJ-1236] gi|254845275|gb|EET23689.1| multifunctional CCA protein [Vibrio cholerae MO10] gi|255735284|gb|EET90684.1| tRNA nucleotidyltransferase [Vibrio cholera CIRS 101] gi|262028296|gb|EEY46953.1| tRNA nucleotidyltransferase [Vibrio cholerae INDRE 91/1] gi|297540889|gb|EFH76943.1| tRNA nucleotidyltransferase [Vibrio cholerae MAK 757] Length = 403 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 144/350 (41%), Gaps = 33/350 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP--------N 53 Query: 87 KYFDITTLRSDLITD----GRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T G + D LRRD TINA+ D G++ID GG Sbjct: 54 SKEEHALARTERKTSVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDNSGQLIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL + ++ + A +ED LR+LR RF A ++ L+A I L+ Sbjct: 114 RDLAAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E +K L A +P + + + G + ++ D+L V + E+ + Sbjct: 171 HLTAERVWQEWHKSLSAHHPEMFLQVLRDCGALAVVLPEI-----DRLFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKK 315 +ID+ + ++ ++ Q + S+ +F+ ++ + K + I+ Sbjct: 225 EIDTGIHTLM-VAKQAAQLSDSLLVRFAAQVHDLGKGVTPPSEWPRHKLHCHTGLNIIES 283 Query: 316 LFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF---ILQVLSDIIHWKKPL 362 L L + + ++N+ D L+VL + W+KP Sbjct: 284 LCERIRVPNEFRDLALAVCAQHSNIHRADELKPTTKLKVLGLLDVWRKPE 333 >gi|166710584|ref|ZP_02241791.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 410 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 78/415 (18%), Positives = 148/415 (35%), Gaps = 75/415 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ D D + ++ K K P + + Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVGADQAQMEAQGFKPVGKDFPVFLHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G++ D G Sbjct: 54 SGEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGELFDPHNG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL+ ++ +G A +ED +R+LR RF A ++ L+ + A L Sbjct: 114 ARDLQACVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L ER+W E+ + L P + +++ + I ++ D L V + Q F Sbjct: 171 DSLVPERVWQELRRALTCAQPSAFLRTLHDTDGLRAILPEI-----DALYGVPQRAQ-FH 224 Query: 258 WKIDSLLR-------------------FIVLISWQDK-------------------KSIL 279 ++D+ + F L K + Sbjct: 225 PEVDTGIHQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEQWPRHIMHEQRGVAPLQ 284 Query: 280 SMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKI-F 332 ++ ++ +P++ R + + N + ++ E+ + IA+L + Sbjct: 285 ALCERLKVPQDYRQLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVC 344 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 A L ++ + ++ + D+ G+ G ++G L Sbjct: 345 EADKRGRLGSEEAAYPQG--EELKGLHAAASAINARDLAADGLQ-GPQIGEALTK 396 >gi|253698789|ref|YP_003019978.1| poly(A) polymerase [Geobacter sp. M21] gi|251773639|gb|ACT16220.1| poly(A) polymerase [Geobacter sp. M21] Length = 482 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 109/298 (36%), Gaps = 52/298 (17%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 + + IL L + +VGG VRD L+ +D D+ T P ++ ++F R Sbjct: 23 SPNAVKILYKLKEQGFTGYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKMFRNCRLIGR 82 Query: 68 -YKVIPTSISYGTIKIICRKKYFD-------------------------ITTLRSD---- 97 +++ I++ + D + Sbjct: 83 RFRLAHLHFHDEIIEVATFRSTVDASAEAPAEETAEASSEAALELPQEAVAEAELLEGER 142 Query: 98 --------------LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGL 142 DG + + D++RRDFT+NAL+ + +ID+VGG+ Sbjct: 143 EGRRRRGHHGPSMLKSEDGMVLRDNVFGTPEEDAVRRDFTVNALFYNIADFSIIDHVGGM 202 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ I+ IGD R ED +R++R RF + G NI+ A + + + Sbjct: 203 EDLKQGLIRTIGDPLVRFTEDPVRMIRAIRFASMLG-FNIEERTEAAIEELCGTINKATP 261 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE--QVFEW 258 R++ E+ KLL M + G+F +F + A + EW Sbjct: 262 PRLYEEVLKLLLLGAGERTYQMMRHSGLFAPLFPHFDAWLARESEGYPHARVSKGLEW 319 >gi|262275012|ref|ZP_06052823.1| tRNA nucleotidyltransferase [Grimontia hollisae CIP 101886] gi|262221575|gb|EEY72889.1| tRNA nucleotidyltransferase [Grimontia hollisae CIP 101886] Length = 409 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 85/405 (20%), Positives = 148/405 (36%), Gaps = 57/405 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L+V+D D + D ++R + P + T + Sbjct: 2 KTYLVGGAVRDELLGLNVKDRDWVVVGADIDTMLRAGYQQVGADFPVFLHPKTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVV--FTR--DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V FT + D RRD TINA+ + G ++D GG Sbjct: 57 ---EHALARTERKSGKGYTGFVCDFTPQVTLEEDLQRRDLTINAIAKAEDGTLVDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL NR ++ + A +ED LR+LR RF A + G + D L+ I L+ Sbjct: 114 QDLSNRLLRHVSPA---FVEDPLRVLRVARFAARFHHLGFRVADETLTLMKHIVDSGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQLSQ--------- 248 L++ER+W E K L +++P + + + G + ++ + + Q Q Sbjct: 171 ALTAERVWKEWEKSLSSQHPDVFLSVLRDCGALAVVLPEIDALFGVPQPEQWHPEIDTGI 230 Query: 249 --VIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ A Q + D ++RF + K I ++ ++ + Sbjct: 231 HTLMVARQAAQLTEDPVIRFAAQVHDLGKGLTPKEEWPSHKRHTRLGLAPIKALCERIRV 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNNLTHQDTC 346 P R + + N + ++ KI + HQ Sbjct: 291 PNAYRDAALLVCAEHTNVHNAGELKATTFVKIFDRNDCWRKPEKIPQLATASKADHQGRT 350 Query: 347 FILQVLSDIIHWKKPLF----PLTGDDVVKYGIPPGKKVGNILVH 387 Q W F + +V G G + L Sbjct: 351 GFEQRDYPQADWLAGAFDAANAVEVKPIVAAGFK-GPAIREELTR 394 >gi|85057887|ref|YP_456803.1| poly(A) polymerase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789992|gb|ABC65724.1| poly(A) polymerase [Aster yellows witches'-broom phytoplasma AYWB] Length = 407 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 100/413 (24%), Positives = 167/413 (40%), Gaps = 44/413 (10%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLS-VQDIDIATTILPDRVMRIFSKTRYKVIPT 73 I+++L ++ IVGG VRD L+ ++ +DIDI T P ++ + K Sbjct: 10 AQKIITILKTNGFEAFIVGGTVRDYLLKINANEDIDITTNAAPKQIKLLL--CPKKTTQI 67 Query: 74 SISYGTIKIICRKKYFDITTLRSD-LITDGRYA-KVVFTRDWKADSLRRDFTINALYADQ 131 I+YG++KI K F+ITT R + D R+ ++ FT++ D LRRDFTINAL D+ Sbjct: 68 QINYGSLKITFEKYLFEITTYRKEGTYKDYRHPSEIFFTKNIHQDLLRRDFTINALLMDE 127 Query: 132 QGKVIDYV---GGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 GK+ D+ G DL+ I+ I D R ED LRILR F F + I+ + Sbjct: 128 TGKIFDFTPEKKGKTDLKKGLIRTIKDPFIRFQEDPLRILRAFYFQSKLC-FCIEKNTKK 186 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD----------- 237 A I+ L +SS+RI+ + K++ KN M +FL Sbjct: 187 AIIQKNHLLAKISSQRIYEHLEKIITHKNWHQTFKTMIETK--THLFLPQIYKSILCLGY 244 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLIS 297 + E L + + ++ W + LL +L S+ K + + L Sbjct: 245 LNETQLKYIQTHHKLKRRIFWSMSLLLNNQILASFPFTKQKKKIYQ-----NIASLSLYL 299 Query: 298 FFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIH 357 + N FN + +G K + +I L + + + + Sbjct: 300 WENITFN------------LFKHGLKNCLLANQINYLLQKEP---YEVAKMQYIYQHLPI 344 Query: 358 WKKPLFPLTGDDVVKY--GIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 + +V+K P G + + + +N +E L + + Sbjct: 345 KTITELNFSWKEVLKQLPQKPKGTWIKHTQKELITKVLNREIPNIKERLINFV 397 >gi|319776497|ref|YP_004138985.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3047] gi|317451088|emb|CBY87321.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3047] Length = 416 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 137/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I ++ + + K P ++ T ++ Sbjct: 2 KIYLVGGAVRDQLLGLPVKDRDWIVVGADHATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G+VID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEVIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELEHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALHGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|289209615|ref|YP_003461681.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thioalkalivibrio sp. K90mix] gi|288945246|gb|ADC72945.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thioalkalivibrio sp. K90mix] Length = 410 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 136/348 (39%), Gaps = 40/348 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD L+ V + D + P+ + + + P + T + Sbjct: 2 QTYLVGGAVRDRLLGRPVHERDYVVVGATPEAMEAAGYRPVGRDFPVFLHPTTHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F + D RRD TINA+ D G + D G Sbjct: 57 ---EYALARTERKTARGYHGFQFNAAPDVTLEDDLERRDLTINAMAEDADGHLFDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED +R+LR RF A D+ L+ + + Sbjct: 114 ADLEARLLRHVSPA---FSEDPVRLLRVARFAAQLEPWGFRVADDTRELMRELVTSGEVD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L ER+W+E K L++ P I + + G +F +++ + + + Sbjct: 171 ALVPERVWAECEKALKSPAPRRFIEVLRDAGALARLFPEIECLF------GVPQPARYHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID+ + ++ +L A + S E+R+ + + K + P+I + Sbjct: 225 EIDTGVHTLM---------VLDQATRLSESPEVRFAAL----VHDLGKGNTDPDILPSHH 271 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + ++ ++ + L N ++D + ++H L P T Sbjct: 272 GHEERGVLLIRALAERLRIPN-RYRDLAVRVSRYHGLVHRVFELRPKT 318 >gi|58428117|gb|AAW77154.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 713 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 80/415 (19%), Positives = 149/415 (35%), Gaps = 75/415 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ D D + R+ K K P + + Sbjct: 305 KIYLVGGAVRDALLGQPAGDRDWVVVGADQARMEAQGFKPVGKDFPVFLHP--------R 356 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G+ D G Sbjct: 357 SGEEYALARTERKSGRGYRGFVVDADPLVTLEEDLLRRDFTINAIARDEDTGEFFDPYNG 416 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL+ R ++ +G A +ED +R+LR RF A ++ L+ + A L Sbjct: 417 ARDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGEL 473 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L ER+W E+ + L P + +++ + I ++ D L V + Q F Sbjct: 474 DSLVPERVWQELRRALTCAQPSAFLRTLHDTDGLRAILPEI-----DALYGVPQRAQ-FH 527 Query: 258 WKIDSLLR-------------------FIVLISWQDK-------------------KSIL 279 ++D+ + F L K + Sbjct: 528 PEVDTGIHQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEQWPRHIMHEQRGVAPLQ 587 Query: 280 SMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKI-F 332 ++ ++ +P++ R + + N + ++ E+ + IA+L + Sbjct: 588 ALCERLKVPQDYRQLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVC 647 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 A L ++ + +++ + D+ G+ G ++G L Sbjct: 648 EADKRGRLGSEEAAYPQG--AELKRLHAAASAINARDLAADGLQ-GPQIGEALTK 699 >gi|290968749|ref|ZP_06560287.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781402|gb|EFD93992.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Megasphaera genomosp. type_1 str. 28L] Length = 446 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 80/437 (18%), Positives = 157/437 (35%), Gaps = 48/437 (10%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK-VIPTSISY 77 L L + ++ +VGGAVRD L++ D DI T P+ + ++ + + + + Sbjct: 9 LQALRQEGYEAYLVGGAVRDMLLHRKPHDYDIVTQARPEEIKQVAQRHGWSCTMQPGEVF 68 Query: 78 GTIKIICRKKYFDITTLRSDLI--TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKV 135 G + + + T R ++ R + + + + D LRRDFTINAL +G++ Sbjct: 69 GIVTVRVEGLSLETATYRKEVYGKDSHRPSDIWYATTLQEDMLRRDFTINALAMTAEGRI 128 Query: 136 IDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKK 195 +DYVGG DL+ + + +G+ R ED LR+ R R G ++ + A +A Sbjct: 129 LDYVGGQRDLKEKRLATVGEPVRRFREDGLRLFRACRLVGQLG-FTPEASLVQAMPQALF 187 Query: 196 GLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFK--------------EIFLDVQEI 241 + +S +R E ++LL + G+ IF ++ Sbjct: 188 RVAGISLQRAVQEGDRLLLTPYAAEGLQLWKQTGLAAAACRSRKNGVEVAVPIFPELVYW 247 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLI-------------------SWQDKKSILSMA 282 Q A + D LR+ L SW D + + Sbjct: 248 VSPDDWQRTLAY-ISHLPGDLTLRYAALFHPFCGTSLPPSAGNVFTADSWADIPT--QVL 304 Query: 283 KKF-SLPREIRY--FLISFFNCNFNQKTLSIPEIKK-LFYLYGDKVMIAKLKIFLALHYN 338 +++ +E+R +L+ + +++S ++ V K ++ A+ Sbjct: 305 RRWGKAAKEVRRILWLVQQSQTVLSLQSISEEACRRWWCREIRQGVFKRKEQLLQAVQQM 364 Query: 339 NLTHQDTCFILQV-LSDIIHWKKPLFPLTGDDVV---KYGIPPGKKVGNILVHCKQEWIN 394 + + + P+ D++ GK G L + ++ Sbjct: 365 CAMVRVMAAAQHLPFYERRVAVATRLPVETKDLLYSSALVQYCGKDTGACLQYLLRQVQE 424 Query: 395 SSFQLSQEDLHHLLRKL 411 + L + Sbjct: 425 GRLHNTASVLEQAAEQW 441 >gi|104779694|ref|YP_606192.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas entomophila L48] gi|166233870|sp|Q1IG27|CCA_PSEE4 RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|95108681|emb|CAK13375.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase] [Pseudomonas entomophila L48] Length = 375 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 80/378 (21%), Positives = 140/378 (37%), Gaps = 30/378 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ V D+D + +++ + P + T + Sbjct: 2 QIYKVGGAVRDRLLGRPVSDVDWLVVGATVEQMQAQGFRPVGADFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F + D +RRD TINA+ D+ G + D G Sbjct: 57 ---EYALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEHGDLHDPYHGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y ++ L+ I A L Sbjct: 114 TDLDQRILRHVSLA---FAEDPLRVLRVARFAARYAPMGFRVADETLELMRQISASGELL 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER W EI + L P I + G KE+ +V + ++SQ A V + Sbjct: 171 ALTAERSWKEIERALMEDQPQVFIEVLRACGALKELMPEVDALFHGEVSQGSHALDVLQQ 230 Query: 259 KIDSL----LRFIVLISWQDKKSILSMAKKFSLPREIRYFLI---SFFNCNFNQKTLSIP 311 +R+ L+ K I ++ ++F PRE + I F L+ Sbjct: 231 AAAQQQPLAVRWACLLLALGGKQIKTVNQRFKAPRECQELAILVGEFHEQGHRAMELAPE 290 Query: 312 EIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 + L + + + F+ + + + ++ Sbjct: 291 MLLDLLQKFDVYRRPQRFEEFIEACRMDALLGGRDYPQSEYLRGAAATARAVDVKP--LM 348 Query: 372 KYGIPPGKKVGNILVHCK 389 + G+ G+ +G L + Sbjct: 349 ESGLT-GQALGGALKAAR 365 >gi|124268482|ref|YP_001022486.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1] gi|124261257|gb|ABM96251.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1] Length = 434 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 70/355 (19%), Positives = 136/355 (38%), Gaps = 47/355 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ ++ +D D + P +++ + P + T + Sbjct: 22 QVFVVGGAVRDELLGIAGRDRDWVVVGSTPQQMLDAGFLPVGRDFPVFLHPQTHE----- 76 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + RS+ T Y F + D RRD TINA+ G +ID GG Sbjct: 77 ---EYALARSERKTGPGYHGFSFHAAPDVTLEQDLARRDLTINAIARAADGTLIDPYGGQ 133 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL R ++ + A ED +RILR RF A + ++ + L+ + + L Sbjct: 134 RDLAARVLRHVSPA---FAEDPVRILRVARFAARFDGFSVAPETLALMRDMVDGGEVDHL 190 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+ + L P + G + + +V +L V + + ++ Sbjct: 191 VPERVWQELARGLMEPRPSRMFELLRECGALQRLLPEVA-----RLWGVPQRAE-HHPEV 244 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI-----------SFFNCNFNQKTLS 309 D+ + ++ +L M+ + P +RY + + + S Sbjct: 245 DTGVHLMM---------VLDMSARLDAPLTVRYACLGHDLGKGSTPAELLPRHIGHEQRS 295 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKP 361 + ++ L + +L +A + N+ ++++L ++KP Sbjct: 296 VALLRGLNERLRVPIDCRELADVVAREHGNVHRSGEFGAAALVRLLERCDAFRKP 350 >gi|330448769|ref|ZP_08312416.1| tRNA nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492960|dbj|GAA06913.1| tRNA nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 411 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 71/350 (20%), Positives = 137/350 (39%), Gaps = 33/350 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L+V D D + P+ ++ + P + T + Sbjct: 2 QTYLVGGAVRDTLLGLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVFLHPKTKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D LRRD TINA+ G++ID G Sbjct: 57 ---EHALARTERKSGHGYTGFVCYSAPDVTLEQDLLRRDLTINAIAQAPNGELIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ ++ ++ + A ED LR+LR RF A + ++ L+ + L Sbjct: 114 QDITDKVLRHVSPA---FAEDPLRVLRVARFAARFAHLGFTVAPETMALMQEMVVSGELA 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L + +P + + G + ++ D L V + E+ + Sbjct: 171 SLTPERVWKEWEKSLSSDDPQMFLTVLRQCGALAIVMPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID + + L++ + + +F+ +S + + K IK + Sbjct: 225 EIDCGIHTL-LVAKKAAELSADKTIRFAAQVHDLGKALSPKDDLPHHKMHCRDGIKPIKA 283 Query: 319 LYGDKVMIAKLKIFLALHYN------NLTHQDTCFILQVLSDIIHWKKPL 362 L + + + L + +++ I W+KP Sbjct: 284 LCQRLRVPNEYRDLALLVCEQHTKIHHAEEMRADTFIKIFDQIDAWRKPE 333 >gi|261211541|ref|ZP_05925829.1| tRNA nucleotidyltransferase [Vibrio sp. RC341] gi|260839496|gb|EEX66122.1| tRNA nucleotidyltransferase [Vibrio sp. RC341] Length = 403 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 147/359 (40%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLSAGFQAVGKDFPVFLHPK-----SKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D+ G+VID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDESGQVIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 R ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AARVLRHVSPA---FMEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + N G + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEVFLQVLRNCGALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ + A + S +R+ + K ++ P L+ Sbjct: 228 TGIHTLM---------VAKQAAQLSDSLPVRFA----AQVHDLGKGVTPPSEWPSHKLHC 274 Query: 322 D------KVMIAKLKIF-----LALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 + + ++++ LAL + + L+VL + W+KP Sbjct: 275 HTGLNIIESLCERIRVPNEFRDLALAVCAQHSNVHRADELKSATKLKVLGLLDVWRKPE 333 >gi|297584394|ref|YP_003700174.1| polynucleotide adenylyltransferase region [Bacillus selenitireducens MLS10] gi|297142851|gb|ADH99608.1| Polynucleotide adenylyltransferase region [Bacillus selenitireducens MLS10] Length = 384 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 84/404 (20%), Positives = 160/404 (39%), Gaps = 36/404 (8%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I L ++ I GGAVRD + DID++T P++V++ F +T+ P Sbjct: 7 ARFIQKKLTDQGFETYITGGAVRDLYLGRKASDIDLSTEAGPNQVIKAFERTK----PIG 62 Query: 75 ISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGK 134 I +GTI +I + F++TT R D RDFTINA+ + Sbjct: 63 IEFGTILVILEGEGFEVTTFR--------------GTTITEDLACRDFTINAMALSNDWQ 108 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASI-KA 193 +ID G DL I+ + A +L+D +R++R RF +G + +S+ L+A I + Sbjct: 109 LIDPFNGRQDLAKGLIQTVASAEGTLLDDPIRMIRSLRFALQFGFR--ESEDLIACIQRH 166 Query: 194 KKGLKILSSERIWSEINKLLE---AKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVI 250 ++ + ERI E NK+ K + + ++ S ++++ I Sbjct: 167 ADKIRRAAVERITGEFNKISMVTWTKEKSEYFID------HPALLPFIELFSHNRINTEI 220 Query: 251 EAEQVFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS 309 + E +++ ++ ++ + D + + F L + +S + Sbjct: 221 RSVGFPEKELNEIIWWVFAVYEEHDPGRVRQRLRTFKLSNKTVETAVSVCRMTDLFRKNG 280 Query: 310 IPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDD 369 L Y G+ V+ L L Y DT + ++ K +TG D Sbjct: 281 SWCAMDL-YQAGETVLR---YACLLLGYLMDEPPDTDRQITKYRELPITDKSELAVTGKD 336 Query: 370 VVKYGIP-PGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 +++ P ++ L ++ + + L +++ I Sbjct: 337 LIRLVPEIPKREYSYWLKELTALVVDRQIENDEAILITYVKEQI 380 >gi|90580764|ref|ZP_01236567.1| putative tRNA nucleotidyltransferase [Vibrio angustum S14] gi|90438032|gb|EAS63220.1| putative tRNA nucleotidyltransferase [Vibrio angustum S14] Length = 409 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 73/349 (20%), Positives = 136/349 (38%), Gaps = 33/349 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+NL+V D D + P+ ++ + P + T + Sbjct: 2 QTYLVGGAVRDTLLNLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVFLHPKTKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D RRD TINA+ G++ID G Sbjct: 57 ---EHALARTERKSGHGYTGFVCYSAPDVTLEQDLQRRDLTINAIAQAATGELIDPYHGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL ++ ++ + A ED LR+LR RF A + ++ L+ + L+ Sbjct: 114 QDLHDKILRHVSPA---FSEDPLRVLRVARFAARFAHLGFTVAPETIALMQEMVISGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L + +P + + G + ++ D L V + E+ + Sbjct: 171 SLTPERVWKEWEKSLSSDDPQVFLTVLRQCGALSVVMPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID + + L++ + + +F+ +S + KT IK + Sbjct: 225 EIDCGIHTL-LVAKKAAELTTDKTIRFAAQVHDLGKALSPKEDLPHHKTHCRDGIKPIKA 283 Query: 319 LYGDKVMIAKLKIFLALHYNN------LTHQDTCFILQVLSDIIHWKKP 361 L + + L +++ I W+KP Sbjct: 284 LCQRLRIPNDYRDLALLVCEQHTKIHYAEEMRADTFIKIFDQIDAWRKP 332 >gi|319897274|ref|YP_004135469.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3031] gi|329124006|ref|ZP_08252553.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] gi|317432778|emb|CBY81143.1| tRNA nucleotidyltransferase [Haemophilus influenzae F3031] gi|327467431|gb|EGF12929.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] Length = 416 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 139/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L++L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KVYLVGGAVRDQLLDLPVKDRDWIVVGTDPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALHGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|91794174|ref|YP_563825.1| polynucleotide adenylyltransferase region [Shewanella denitrificans OS217] gi|123165855|sp|Q12KC4|CCA_SHEDO RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|91716176|gb|ABE56102.1| metal dependent phosphohydrolase [Shewanella denitrificans OS217] Length = 413 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 82/419 (19%), Positives = 153/419 (36%), Gaps = 69/419 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L+++D D + P ++ + + K P + K Sbjct: 2 KIYLVGGAVRDALLGLTIKDKDYLVVGSTPAEMLSLGYRQVGKDFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLIT----DGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R + T DG + D LRRD TINA+ D+QG++ D GG Sbjct: 54 NQQEYALARIERKTGTGYDGFSCDANEHVSLEEDLLRRDLTINAIAQDEQGQLHDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ ++ ++ + A +ED LR+LR RF A + ++ L++ I L+ Sbjct: 114 QDIIHKQLRHVSQA---FVEDPLRVLRVARFAARFHSLGFTVATETMALMSQISLSGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E + L P + G + +F ++ L V + E+ + Sbjct: 171 HLTAERVWQECERALATDEPQVFFEVLAQCGALEVLFPEIHA-----LFGVPQPEK-WHP 224 Query: 259 KIDSL------------------LRFIVLISWQDKK-------------------SILSM 281 +ID+ +RF L+ K I Sbjct: 225 EIDTGKHTLLSLKQASLLTDDMAIRFATLVHDLGKALSPKESLPKHHGHGQKGLPLIKQF 284 Query: 282 AKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM---IAKLKIFLALHYN 338 ++ +P + R + + + N + L L+ +L L+ Sbjct: 285 CQRLRVPNDYRDLALLVSDQHQNIHNAFELKASTLVSLFDKGDFWRKPERLNGLLSACIA 344 Query: 339 NLTHQD--TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 ++ + + I H + + ++ G G + N L + I+ Sbjct: 345 DIRGRTGLEKSAYPQAAYIEHCFQLAKQVEVQKIIADGFI-GADIKNQLNRLRILAIDE 402 >gi|229521274|ref|ZP_04410694.1| tRNA nucleotidyltransferase [Vibrio cholerae TM 11079-80] gi|229341806|gb|EEO06808.1| tRNA nucleotidyltransferase [Vibrio cholerae TM 11079-80] Length = 403 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 146/359 (40%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPK-----SKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ + A + S +R+ + K ++ P L+ Sbjct: 228 TGIHTLM---------VAKQAAQLSDSLPVRFA----AQVHDLGKGVTPPSEWPSHKLHC 274 Query: 322 D------KVMIAK---------LKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362 + + + L + + ++N+ D L+VL + W+KP Sbjct: 275 HTGLNIIESLCERIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333 >gi|257464494|ref|ZP_05628865.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus minor 202] gi|257450154|gb|EEV24197.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Actinobacillus minor 202] Length = 414 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 145/363 (39%), Gaps = 54/363 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDI-ATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V+D D P++++ + + P + T + Sbjct: 2 QIYLVGGAVRDQLLGLPVKDRDFLVVGSTPEQLLSLGYQQVGADFPVFLHPQTKE----- 56 Query: 87 KYFDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R + +G + D +RRD TINA+ D G++ D G Sbjct: 57 ---EYALARQERKHGNGYNGFICDFSPEVTLEQDLIRRDLTINAMAQDPTSGQIFDPFSG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGL 197 DL NR ++ + A ED LR+LR RF A + G + + L+ + L Sbjct: 114 KQDLENRLLRHVSPA---FEEDPLRVLRVARFAARFYLLGFRIAEETKSLMRKMATDGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L++ER+W E K + +P ++ G +F + +++L + Q Sbjct: 171 NHLTAERVWLETEKAFQTDSPHIYFAVLHEVGALAVLFPE-----MEKLFGKPQPAQ-HH 224 Query: 258 WKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLF 317 +ID + +++I + +AKK P + + + C+ K L+ +I Sbjct: 225 PEIDCGIHTLMVI-----EQAKQLAKKAENPTALLWAAL----CHDLGKGLTPDDILPHH 275 Query: 318 YLYG------DKVMIAKLKIFLAL------------HYNNLTHQDTCFILQVLSDIIHWK 359 Y + + + +LK+ + H + + +L++ + + W+ Sbjct: 276 YGHEMKGIAPARELSNRLKVPSEVKDFALLVTQYHTHCHKMAELRPETVLKLFNALDVWR 335 Query: 360 KPL 362 KP Sbjct: 336 KPQ 338 >gi|51243913|ref|YP_063797.1| poly(A) polymerase [Desulfotalea psychrophila LSv54] gi|50874950|emb|CAG34790.1| related to poly(A) polymerase [Desulfotalea psychrophila LSv54] Length = 882 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 91/417 (21%), Positives = 160/417 (38%), Gaps = 32/417 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV-MRIFSKTRYKVIPT 73 L + L ++ K+ VGG VRD L+ + D+DI ++ + K P Sbjct: 468 LQEVGELADEIGFKAFAVGGFVRDLLLKTANLDLDIVVEGNGIAFAKKVAEHFKGKFFP- 526 Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ 132 + T + DI T R + ++ K D RRDF+INA+ Sbjct: 527 HEKFLTATVTLPNDFKIDIATARLEYYESPAAMPMIQLSSIKLDLSRRDFSINAMALQIN 586 Query: 133 ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGL 187 G +IDY +DLRN+ I+ + + +ED RI R RF + GL Sbjct: 587 REQFGTLIDYFNSQSDLRNQVIRVLHN--LSFVEDPSRIFRAIRFEKRMNFHIGPHTKGL 644 Query: 188 VASIKAKKGLKILSS-ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE------ 240 + + A S R SE+ + + K+PL +V + G+F+ ++ D++ Sbjct: 645 IGNAVAMNLFGK-SRDSRFLSELKIIFKEKDPLGPLVRLAEFGLFQYLWPDLRPNYRTDR 703 Query: 241 ---ISLDQLSQVIEAEQVFEWKI---DSLLRFIVLISWQDKKSILSMAKKFSLPREI-RY 293 + Q I+ E K S+ + + + I + +F+ +I + Sbjct: 704 RFCHGIRQTKAAIKKLYEIEPKAKIDKSVAFLLTIFHRSGPEEIQAFCNRFNEEEKICKK 763 Query: 294 FLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLS 353 L + C+ L P K + + + L ++ + H+ VL Sbjct: 764 LLQTKQRCDALLPILYTPMAKSELHQHLQDLNYEDLLYICSVAKKSHIHK------SVLD 817 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 + + L G D+++ G P G K IL K+ ++ S+ D LL+K Sbjct: 818 YLCQLRHIKPLLKGKDLMEMGYPRGPKFSEILNSLKRAKMDG-LVSSRADEEELLQK 873 >gi|192361371|ref|YP_001981281.1| tRNA nucleotidyltransferase [Cellvibrio japonicus Ueda107] gi|190687536|gb|ACE85214.1| tRNA nucleotidyltransferase [Cellvibrio japonicus Ueda107] Length = 439 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 83/419 (19%), Positives = 145/419 (34%), Gaps = 58/419 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIAT-TILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ V + D P + K P I T + Sbjct: 33 KTYLVGGAVRDKLLGRPVHERDWVVIGSSPAAMEAAGFLPVGKDFPVFIHPQTKE----- 87 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y F + D +RRD TINA+ D G +ID GG Sbjct: 88 ---EYALARTERKTGHGYGGFSFYCGENVALEEDLIRRDLTINAMAEDDVGNIIDPYGGQ 144 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +DL+ R ++ + A ED +RILR RF A Y ++ L+ S+ Sbjct: 145 SDLQQRLLRHVSPA---FAEDPVRILRVARFAARYHGLGFTLAEETLALMRSMVCNGEAD 201 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE----- 253 L +ERIW E + L P I + + G + +V + + V E Sbjct: 202 HLVAERIWKETERALAEPWPHIFIQVLRDCGALGRLMPEVDALFGIPQTAVHHPEIDTGI 261 Query: 254 -------QVFEWKIDSLLRFIVLISWQDKKS-------------------ILSMAKKFSL 287 Q L+RF L+ K + I + + + Sbjct: 262 HTLLSLQQAARLSPLPLVRFATLMHDLGKGATPPEKWPRHIAHEIRSLPLIKQLCDRIAA 321 Query: 288 PREIRYFLISFFNCNFNQK---TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQD 344 P+E + + + + L+ + K +++ FL + + Sbjct: 322 PKEYKELSLLVAEYHTHCHRALELTAATLLKTLQALDGFRRPERVEQFLLCCEADARGRT 381 Query: 345 --TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQ 401 + + +T + G+ GK +G+ + + + + + F+ Q Sbjct: 382 GLEARAYPQADYVRQALQRCLSVTSKQFLTQGLN-GKALGDAIHQERLKQLQT-FKTDQ 438 >gi|110834913|ref|YP_693772.1| tRNA cytidylyltransferase [Alcanivorax borkumensis SK2] gi|122959348|sp|Q0VMU8|CCA_ALCBS RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|110648024|emb|CAL17500.1| tRNA cytidylyltransferase [Alcanivorax borkumensis SK2] Length = 410 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 88/427 (20%), Positives = 157/427 (36%), Gaps = 72/427 (16%) Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 +VGGAVRDSL+ L V + D + P + + K P + T + Sbjct: 3 VYLVGGAVRDSLLGLPVTEKDWVVVGATPKEMEANGFRPVGKDFPVFLHPKTQE------ 56 Query: 88 YFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + R++ + Y F T + D +RRD TINA+ + G++ID G Sbjct: 57 --EYALARTERKSGHGYGGFTFHAASTVSLEEDLIRRDLTINAMAQARGGEIIDPFNGRV 114 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL+ R ++ + A ED LR+LR RF A Y D+ L+ + L Sbjct: 115 DLKARLLRHVSPA---FAEDPLRVLRVARFAARYHWLGFQVADDTLMLMKQLSDSGELGY 171 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L +ER+W E ++ L ++P ++ G +F ++ L V + EQ + Sbjct: 172 LVAERVWKETSRALMERDPQVFFQVLHRCGALHALFPELAA-----LDGVPQPEQ-HHPE 225 Query: 260 IDSLL------------------RFIVLISWQDKKSI-------------------LSMA 282 +D+LL R+ +L K ++ Sbjct: 226 VDTLLHQFLCLKQAARLGLSLNARYALLCHDLGKGKTPKEEWPRHIAHEIRSARLSKKVS 285 Query: 283 KKFSLPREIR--YFLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNN 339 K+ +P+E L++ F+ + ++ L + KLF +L FL + Sbjct: 286 KRLKVPKEAATLATLVAEFHTHSHRALELKPATVWKLFKSLDILRRPERLTDFLGACEAD 345 Query: 340 LTHQDTCFILQV--LSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + + + S + + + G G +G +Q I++ Sbjct: 346 ARGRTSFENREYPQASYLQGAADAARQVDIQALQAQGHE-GPALGEA---IEQARIDAIA 401 Query: 398 QLSQEDL 404 Q++L Sbjct: 402 TFKQQEL 408 >gi|254481065|ref|ZP_05094311.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [marine gamma proteobacterium HTCC2148] gi|214038860|gb|EEB79521.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [marine gamma proteobacterium HTCC2148] Length = 413 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 87/420 (20%), Positives = 158/420 (37%), Gaps = 75/420 (17%) Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 + +VGGAVRD+L+ + D + P +++ + + K P + T Sbjct: 8 TFLVGGAVRDALLGYPAYERDWVVVGATPKQMLELGYQQVGKDFPVFLHPET-------- 59 Query: 88 YFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLN 143 + R++ + Y D + D LRRD TINA+ D +G + D GG Sbjct: 60 KDECALARTERKSGHGYTGFAVHCDPSVTLEEDLLRRDLTINAMAQDTEGNITDPYGGQQ 119 Query: 144 DLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKI 199 DL +R ++ + DA +ED LR+LR RF A Y ++ L+ I + L Sbjct: 120 DLADRVLRHVSDA---FVEDPLRVLRTARFAARYAHLGFAVAPETLALMTEIVNQDELAH 176 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWK 259 L +ERIW E+++ L +NP I + + G ++ + LD L V + E + Sbjct: 177 LPAERIWVELDRALGERNPEVFIEVLRDCGALAKLIPE-----LDALFGVPQPE-AHHPE 230 Query: 260 IDSL------------------LRFIVLISWQDK-------------------KSILSMA 282 IDS +RF VL+ K K + ++ Sbjct: 231 IDSGVHTLMSLQQVVILSDAGDVRFAVLLHDLGKGVTPADELPRHIAHEFRGVKLVKAVC 290 Query: 283 KKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAK-------LKIFLAL 335 K+ P + R + + + K L L + + L A Sbjct: 291 KRLKAPNQYRDLALKACEYHLHSHRAMELRGKTLLKLLTATDALRRPGRFEAFLLACEAD 350 Query: 336 HYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINS 395 L ++ + + + ++ +T V+ G+ G+++G + + ++ Sbjct: 351 ARGRLGREEEPY--PQANYLRKAREIALEITA--VLFPGVE-GRELGEAIAEERVRRLDE 405 >gi|89075906|ref|ZP_01162281.1| putative tRNA nucleotidyltransferase [Photobacterium sp. SKA34] gi|89048347|gb|EAR53925.1| putative tRNA nucleotidyltransferase [Photobacterium sp. SKA34] Length = 409 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 74/349 (21%), Positives = 136/349 (38%), Gaps = 33/349 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+NL+V D D + P+ ++ + P + T + Sbjct: 2 QTYLVGGAVRDTLLNLTVTDKDWVVVGTTPEAMLAAGFEQIGSDFPVFLHPKTKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D RRD TINA+ G++ID G Sbjct: 57 ---EHALARTERKSGHGYTGFVCYSAPDVTLEQDLQRRDLTINAIAQTPTGELIDPYYGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL ++ ++ + A ED LR+LR RF A + ++ L+ + L+ Sbjct: 114 QDLHDKILRHVSPA---FSEDPLRVLRVARFAARFAHLGFTVAPETIALMQEMVISGELE 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E K L + +P I + G + ++ D L V + E+ + Sbjct: 171 SLTPERVWKEWEKSLSSDDPQVFITVLRQCGALSVVMPEI-----DALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +ID + + L++ + + +F+ +S + KT IK + Sbjct: 225 EIDCGIHTL-LVAKKAAELTTDKTIRFAAQVHDLGKALSPKEDLPHHKTHCRDGIKPIKI 283 Query: 319 LYGDKVMIAKLKIFLALHYNN------LTHQDTCFILQVLSDIIHWKKP 361 L + + L +++ I W+KP Sbjct: 284 LCQRLRIPNDYRDLALLVCEQHTKIHYAEEMRADTFVKIFDQIDAWRKP 332 >gi|301170365|emb|CBW29971.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Haemophilus influenzae 10810] Length = 416 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 81/316 (25%), Positives = 139/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L++L V+D D I P ++ + + K P ++ T ++ Sbjct: 2 KIYLVGGAVRDQLLDLPVKDRDWIVVGTDPATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSTGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+A + L+ ++ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFTARYHSLGFKIASETLALMAELALSGELQHIT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALHGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|330999362|ref|ZP_08323079.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859] gi|329575220|gb|EGG56771.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859] Length = 479 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 116/279 (41%), Gaps = 18/279 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I++ L K+ IVGGAVRD L+ +D D+AT P+ V ++ + I Sbjct: 39 AISVCQKLQDAGYKAFIVGGAVRDLLIGAKPKDFDVATDATPEEVKKVTRRA----IIIG 94 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI------TDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + + + ++ T R DG + D+ RRDFT+NA+Y Sbjct: 95 RRFRLVHVNKGAETIEVATFRGFAKQGVTKDEDGVITNDNVFGEQYEDAARRDFTVNAMY 154 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D G + DY GL+D+R R I+ IGD R ED +RILR R A G ID Sbjct: 155 FDPISGDLYDYHHGLDDIRERKIRMIGDPATRYREDPVRILRAIRIAAKLG-FTIDEKTA 213 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG------IFKEIFLDVQEI 241 + L + S R+ E +K++ + + + + M +F + Sbjct: 214 APMHYMQTLLLSVPSARLADEFSKMVLSGSAVACMELMNRYDINIPIPLFDVLKRTFGLP 273 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 + + + +A I + F VL+ + K+ + Sbjct: 274 FVRKGLERCDARVALGKSISTSFLFAVLLWHEMKEEVAK 312 >gi|197116551|ref|YP_002136978.1| nucleic acid-independent polyadenylating polymerase [Geobacter bemidjiensis Bem] gi|197085911|gb|ACH37182.1| nucleic acid-independent polyadenylating polymerase [Geobacter bemidjiensis Bem] Length = 481 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 51/293 (17%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR---- 67 + + L L + + +VGG VRD L+ +D D+ T P ++ ++F R Sbjct: 23 SPNAVKTLYKLKEQGFTAYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKMFRNCRLIGR 82 Query: 68 -YKVIPTSISYGTIKIICRKKYFDITTLRSD----------------------------- 97 +++ I++ + D + Sbjct: 83 RFRLAHLHFHDEIIEVATFRSTVDPSAEAPAEETAEAPSEAAQELPQETVVEAKLLEEER 142 Query: 98 --------------LITDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGL 142 DG + + D++RRDFT+NAL+ + +ID+VGG+ Sbjct: 143 EGRRRRGHHGPSMLKSEDGMVLRDNVFGTPEEDAVRRDFTVNALFYNIADFSIIDHVGGM 202 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSS 202 DL+ I+ IGD R ED +R++R RF + G NI+ A + + + Sbjct: 203 EDLKQGLIRTIGDPLVRFTEDPVRMIRAIRFASMLG-FNIEERTEAAIEELCGTINKATP 261 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQV 255 R++ E+ KLL M + G+F +F L++ S+ +V Sbjct: 262 PRLYEEVLKLLLLGAGERTYQMMRHSGLFAPLFPHFDAW-LERESEGYPHARV 313 >gi|262166486|ref|ZP_06034223.1| tRNA nucleotidyltransferase [Vibrio mimicus VM223] gi|262026202|gb|EEY44870.1| tRNA nucleotidyltransferase [Vibrio mimicus VM223] Length = 403 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 145/347 (41%), Gaps = 27/347 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + T ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPKT-----KE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D+ G+VID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDELGQVIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+ I L L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLAHLGFTVAEETMQLMTDIAQSGELGHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + + LD+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTNHPEVFLQVLRDCGALAVVLPE-----LDRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFY 318 + + +++ Q S+ +F+ ++ + + K + I+ L Sbjct: 228 TGIHTLMVTK-QAALLSDSLPVRFAAQVHDLGKGVTPRSEWPSHKLHCHTGLKIIESLCD 286 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362 L + + ++N+ D L+VL + W+KP Sbjct: 287 RIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333 >gi|262372149|ref|ZP_06065428.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter junii SH205] gi|262312174|gb|EEY93259.1| tRNA nucleotidyltransferase/poly(A) polymerase [Acinetobacter junii SH205] Length = 413 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 26/252 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ + D + P++++ + K P + T + Sbjct: 2 QVYLVGGAVRDHLLGHPYHEKDYVVVGATPEQLLADGFQPVGKDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F D + D +RRD TINA+ D+ G + D GG Sbjct: 57 ---EYALARTERKSGVGYHGFQFHTDKTVKLEEDLIRRDLTINAMAMDENGNIYDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH---YGEKNIDSD-GLVASIKAKKGLK 198 +DL + ++ + DA +ED LR+LR RF A YG K + L++ I + L Sbjct: 114 DDLNQKILRHVSDA---FIEDPLRVLRVARFAARYTAYGFKIAEETLNLMSEIASSGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L+ ER+W E ++ L + + + K +F ++ D L V + + F Sbjct: 171 ALTPERVWKETSRALMEDHADVYFQTLRDCNALKVLFPEI-----DALFGVPQRPE-FHP 224 Query: 259 KIDSLLRFIVLI 270 +ID + ++ + Sbjct: 225 EIDCGIHTLMSL 236 >gi|326391069|ref|ZP_08212616.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter ethanolicus JW 200] gi|325992854|gb|EGD51299.1| Polynucleotide adenylyltransferase region [Thermoanaerobacter ethanolicus JW 200] Length = 388 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 162/400 (40%), Gaps = 37/400 (9%) Query: 11 HDSDLINILSLLN-KGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 ++ DLI +L ++ K + KS IVGG VRD L+ + DID+ I Sbjct: 6 NEIDLIKLLKEISLKTKIKSYIVGGVVRDFLLGVKNLDIDVVVEGDGIEFAYILLSYLKG 65 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA 129 I ++ T + D+ + R + + + D RRDFTIN L Sbjct: 66 DIVVYEAFRTATLSYDGISIDVISARKEYYERPAALPTIEFSNIYDDMARRDFTINTLAY 125 Query: 130 D-QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLV 188 D + K++DY GL DL+ I+ + ++D RI R R+ Y I+ Sbjct: 126 DVIEEKILDYFNGLEDLKKGLIRVLHP--KSFIDDPTRIFRAIRYATRY-SFEIEEKTHN 182 Query: 189 ASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--LDQL 246 ++ + +++LS++RI +EI +L+ I + I K IF + + LD + Sbjct: 183 LMKESIENIRLLSADRIRNEIFLILKESKAKEMIDKLIYYSIDKVIFDGITLNTQHLDTV 242 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFL--ISFFNCNFN 304 +E E L RF+VL + +K I + K+ + + L + F N Sbjct: 243 YVNLEIE---------LYRFLVLFYYLKEKDINEIEKRLRINKIYLKALKDLVFLREQLN 293 Query: 305 QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + +I +I++ ++V+ A +++ + K Sbjct: 294 CQNKNIRKIRETIEETKEEVLKA-IEVMEGEKAEKII------------------KGKLT 334 Query: 365 LTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDL 404 + G D+ G+PPG G ++ + + IN E++ Sbjct: 335 VKGKDIENLGLPPGSLYGELMDNVFEAKINGIIATRDEEI 374 >gi|254516607|ref|ZP_05128666.1| poly(A) polymerase [gamma proteobacterium NOR5-3] gi|219675030|gb|EED31397.1| poly(A) polymerase [gamma proteobacterium NOR5-3] Length = 404 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 18/237 (7%) Query: 19 LSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYG 78 +S L + ++ +VGGAVRD L+ +D DIAT P+ V +FS +R + Sbjct: 1 MSRLRDRDHQAYLVGGAVRDLLLGGHPKDFDIATDATPEEVHALFSNSRI----IGRRFR 56 Query: 79 TIKIICRKKYFDITTLRSD------------LITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + ++ ++TT R + G + + D++RRD T+NA Sbjct: 57 IVHVRFGREVIEVTTFRGHHDDGDPTGPAAKRSSRGLLLRDNVFGTLEEDAVRRDLTVNA 116 Query: 127 LYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSD 185 LY D +V D VGGL+DL R ++ IGD R ED +R+LR RF A + ++ Sbjct: 117 LYYDSGSFEVFDQVGGLDDLEARQVRVIGDPAKRYREDPVRMLRTLRFAAKL-DFRVEKG 175 Query: 186 GLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS 242 + L + + R++ E KL A N + + F +F D ++ Sbjct: 176 SGAPIAELASLLDDIPAARLFDEFGKLFLAGNAQLTLRLLREYRCFDHLFPDSARLA 232 >gi|330823197|ref|YP_004386500.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alicycliphilus denitrificans K601] gi|329308569|gb|AEB82984.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Alicycliphilus denitrificans K601] Length = 415 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 71/366 (19%), Positives = 136/366 (37%), Gaps = 48/366 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V D D + P+ ++ + P + T + Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGARPEDMVARGFVPVGRDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQG----KVIDY 138 + R++ + Y V + D RRD TINA+ A + D Sbjct: 57 ---EYALARTERKSGRGYRGFVVQASPDVTLEEDLSRRDLTINAIAASADWIGAEGLFDP 113 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKG 196 GG DL R ++ + DA ED +RILR RF A + + + + L+ + Sbjct: 114 YGGARDLERRVLRHVTDA---FREDPVRILRVARFAARFTDFTVAPETMALMREMVQAGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L +ER+W E+++ L + P + G + +V ++L V + + Sbjct: 171 ANHLVAERVWQELSRGLMEEKPSRMFDVLRACGALAVVLPEV-----ERLWGVPQRPE-H 224 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-----------FNCNFNQ 305 ++D+ + ++ +L MA + S P +R+ ++ + Sbjct: 225 HPEVDTGVHLMM---------VLDMAARLSAPLAVRFACLTHDLGKGTTPADVLPRHIGH 275 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 + S +K + V +L +A + N+ ++ + P Sbjct: 276 EQRSGKLLKAVAERLRVPVDCRELADVVAREHGNIHRSGELGAAALVRLLERCDAIRKPA 335 Query: 366 TGDDVV 371 DD++ Sbjct: 336 RLDDIL 341 >gi|167031441|ref|YP_001666672.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas putida GB-1] gi|189081875|sp|B0KJ86|CCA_PSEPG RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|166857929|gb|ABY96336.1| Polynucleotide adenylyltransferase region [Pseudomonas putida GB-1] Length = 368 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 136/368 (36%), Gaps = 29/368 (7%) Query: 32 VGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKYFD 90 VGGAVRD L+ V DID + + ++ + P + T + + Sbjct: 6 VGGAVRDRLLGRPVSDIDWLVVGATVEEMLAKGYRPVGADFPVFLHPKTGE--------E 57 Query: 91 ITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGLNDLR 146 R++ + Y F + D +RRD TINA+ D+ G V D G +DL Sbjct: 58 YALARTERKSGRGYGGFTFHASPDVTLEEDLIRRDLTINAMAEDEAGTVYDPYHGKDDLD 117 Query: 147 NRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILSS 202 R ++ + A ED LR+LR RF A Y ++ L+ I A L+ L++ Sbjct: 118 QRLLRHVSPA---FAEDPLRVLRVARFAARYAPLGFRVADETLELMRQISASGELQALTA 174 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDS 262 ER W EI + L P + G E+ ++ +D + EQ + Sbjct: 175 ERSWKEIERALMEARPQVFFQVLGACGALHELLPEL----VDDTQALAALEQAAAHEQPL 230 Query: 263 LLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQ---KTLSIPEIKKLFYL 319 +R+ L+ I ++ ++ PRE + + C + L + +L Sbjct: 231 HVRWACLLRGLAPAPIKTVNQRLKAPRECQELALLTGECLAQGNQAQELPATALLELLQK 290 Query: 320 YGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGK 379 + + + F+ + D + + +V+ G+ G+ Sbjct: 291 FDVYRRPQRFEDFIVV-CEMAALGDGKSSYPQADYLRGAAAAARAVDVKPLVQAGLT-GQ 348 Query: 380 KVGNILVH 387 +G L Sbjct: 349 ALGEALKR 356 >gi|85858488|ref|YP_460690.1| tRNA nucleotidyltransferase [Syntrophus aciditrophicus SB] gi|85721579|gb|ABC76522.1| tRNA nucleotidyltransferase [Syntrophus aciditrophicus SB] Length = 875 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 79/405 (19%), Positives = 151/405 (37%), Gaps = 43/405 (10%) Query: 20 SLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGT 79 L +VGG VRD +M + D+D+ + ++ + Y T Sbjct: 469 ELAESMGFNLFLVGGIVRDMVMRIENLDVDLVVEGDGIIFAKALAEAFGGKVSPHEKYKT 528 Query: 80 IKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGK 134 + + D+ T R + V K D RRDFTIN + + G+ Sbjct: 529 AVVRLPGGRRIDLATARLEYYRMPGAFPEVEESTLKLDLYRRDFTINTMAVALNPHRFGE 588 Query: 135 VIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE-KNIDSDGLVASIKA 193 +ID+ G D+R + I+ + +ED RILR RF + + L++S Sbjct: 589 LIDFFGAQRDIREKKIRVLH--SLSFVEDPSRILRAVRFEKRFNFCLGKQTVSLISSAVQ 646 Query: 194 KKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV------------QEI 241 L+ + RI+ E+ ++L+ +NP+ + ++ + + I D+ Sbjct: 647 AGFLRNIPGRRIFHEMRQILQEENPVRCMDRLHELKVLEAIHPDLVFDERIRESFVSVRE 706 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 +L + E+V W L + L + ++++S+A+ L RE L++ Sbjct: 707 TLFWFRLLYTHEKVRPW----FLYCLALTEPMNPETVMSIAEALGLRREDAEMLLA---- 758 Query: 302 NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALH--------YNNLTHQDTCFILQVLS 353 S +++L I K F L Y + F + Sbjct: 759 -------SRERVRELMKRLASLSEILPSKAFGILEDAALEEMLYAMSRSRSATFKKIFST 811 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQ 398 + W+ P++G D++ G ++G L + + +N + Sbjct: 812 YVTSWRNYRPPVSGKDLLVIGFSQNPELGRCLREIRDQGLNGEIR 856 >gi|288553438|ref|YP_003425373.1| polyA polymerase family protein [Bacillus pseudofirmus OF4] gi|288544598|gb|ADC48481.1| polyA polymerase family protein [Bacillus pseudofirmus OF4] Length = 845 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 85/418 (20%), Positives = 163/418 (38%), Gaps = 31/418 (7%) Query: 1 MVSIVQHKWFHDSDLINILSL-LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRV 59 + V + FH L+ ++ ++ + +VGG VRD L+ +D+D+ Sbjct: 442 LEDTVSKEHFH---LLKLIGREADRFGVNAYLVGGFVRDLLLKRPNEDLDVVIEGDGIEF 498 Query: 60 MRIFSKTRYKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSL 118 + + + I ++GT DI T R++ + +V + + D Sbjct: 499 ANVLAASNGGSIKKHDTFGTATWTTPDDMKIDIVTCRTEYYAETASLPIVRSSNIHEDLT 558 Query: 119 RRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFF 174 RRDFTINA+ GK++D G+ DL+ + I+ + +ED RI R RF Sbjct: 559 RRDFTINAMAMSISEHSFGKLLDEYQGIEDLKAKKIRILHP--ISFIEDPTRIFRAVRFA 616 Query: 175 AHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI 234 +G +I+ + + A L LS +R+ E+ + + L A + ++K + Sbjct: 617 VRFG-YSIEGETARLAQSAMSHLFSLSQQRLRQELTLIHKEAKDLEAFYLLDTLNVWKTL 675 Query: 235 FLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYF 294 F S Q AE+VF+ ++ + ++ + M + + + + R F Sbjct: 676 FQKELPASSWQY-----AERVFKQSGHTVFHILTALA-SPLSNWREMIQLYIMTAKERVF 729 Query: 295 LISFFNCNFN--QKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVL 352 + ++ SI E+ + Y D+ + L F + Sbjct: 730 IEQLNELKQAPIEEIKSIGELHRYLYAVHDETLRFYLLDPT-----------QRFHTHLD 778 Query: 353 SDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 +K LTGDD++K PG + L + + +N +E +L++ Sbjct: 779 DYFKKRQKISLYLTGDDLIKLDFKPGPHFRDYLFELEIKQLNGEISSKEEATKWVLKE 836 >gi|20807771|ref|NP_622942.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter tengcongensis MB4] gi|254478691|ref|ZP_05092062.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Carboxydibrachium pacificum DSM 12653] gi|20516327|gb|AAM24546.1| tRNA nucleotidyltransferase/poly(A) polymerase [Thermoanaerobacter tengcongensis MB4] gi|214035378|gb|EEB76081.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein [Carboxydibrachium pacificum DSM 12653] Length = 390 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 154/395 (38%), Gaps = 30/395 (7%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 K KS IVGG VRD L+ + DID+ ++ + ++ T I Sbjct: 19 QKVGVKSYIVGGVVRDFLLGVENWDIDVVVEGNGIDFAYELNEYIKGELIEYPAFKTATI 78 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD-QQGKVIDYVGG 141 D+ + R + + D D RRDFTIN L D + K++DY GG Sbjct: 79 KKSGISIDVISARREYYDYPAALPRIEFADIYEDMRRRDFTINTLAYDVLEEKILDYFGG 138 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILS 201 + DL+ I+ + + ++D RI R R+ Y I+++ + K + +LS Sbjct: 139 IEDLKKGIIRVLHE--KSFIDDPTRIFRAIRYSVRY-SFEIEANTEALMKDSIKNISLLS 195 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +RI +E+ +L+ I + GI K IF DV +++D+L +E + Sbjct: 196 EDRIRNELFLILKEPKAKEMIEKVIEYGIDKVIFKDVP-VNVDKLDVFVEDLDL------ 248 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 SL R ++L +K + + K L +E L + F ++ + + Sbjct: 249 SLFRLLILFYKIAEKDVEKVQKALKLNKE---HLKALRELIFLREEIKYRRWIRKLRETL 305 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKV 381 + LK+ + + + + G D+ G+ PG Sbjct: 306 ESARNEVLKVLEVMEGDK---------------AKKIIESKPYIKGKDIKNLGVSPGPLY 350 Query: 382 GNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 G +L + + + +E++ ++ ++ + Sbjct: 351 GELLDEVFKAKLEGRLKSKEEEI-SFVKNILRVGK 384 >gi|297180111|gb|ADI16334.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured bacterium HF130_01F24] Length = 410 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 22/248 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ + +D D + P + + + K P + T + Sbjct: 2 KTYLVGGAVRDRLLGVQTKDRDWVVVGASPSSMAELGYRQVGKDFPVFLHPDTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T + F + D RRD TINA+ D G +ID GGL Sbjct: 57 ---EYALARTERKTGVGHTAFDFNISSKVTLEEDLERRDLTINAIAEDHDGNLIDPFGGL 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 +D++N+ ++ + +A +ED LR+LR RF+A D+ L++ + L Sbjct: 114 SDIKNKLLRHVSEA---FIEDPLRVLRVARFYAKLAPFGFNISPDTLKLMSDVSHSSELN 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 LS+ERIW E N L +P + + G K I ++ L ++ Q E Sbjct: 171 TLSAERIWQEFNAALATPSPEKFVSTLRKCGALKAILPELDA--LFRVPQPKEHPSELNT 228 Query: 259 KIDSLLRF 266 + +L+ Sbjct: 229 GMQALMSL 236 >gi|302879356|ref|YP_003847920.1| poly(A) polymerase [Gallionella capsiferriformans ES-2] gi|302582145|gb|ADL56156.1| poly(A) polymerase [Gallionella capsiferriformans ES-2] Length = 453 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 + L K+ +VGGAVRD L++ +D D+AT P+ V R+F ++R Sbjct: 41 AKRVTDGLQAAGFKAFVVGGAVRDLLLDKIPKDFDVATDATPEEVKRVFRRSRI----IG 96 Query: 75 ISYGTIKIICRKKYFDITTLR-------SDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + ++ ++ ++ T R + GR + D + D+ RRDFT NAL Sbjct: 97 RRFRLVHVMFGEELVEVATFRCMIDTEDAQTDAHGRLLRDNEFGDQEQDAARRDFTANAL 156 Query: 128 YADQQG-KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG 186 + D ++ DY G D RN ++ IGD R ED +R+LR R A G +D Sbjct: 157 FYDPTTQEIYDYHQGYQDTRNGVLRIIGDPLVRYREDPVRMLRAVRLSAKLG-IALDPVT 215 Query: 187 LVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 + K L + R+ E+ K+L + + I + + + Sbjct: 216 AAPIAQLKSLLDNVPEARMLDEVLKMLLSGRSVECIQQLRKMELHHGLLP 265 >gi|262190105|ref|ZP_06048394.1| tRNA nucleotidyltransferase [Vibrio cholerae CT 5369-93] gi|262034009|gb|EEY52460.1| tRNA nucleotidyltransferase [Vibrio cholerae CT 5369-93] Length = 403 Score = 215 bits (549), Expect = 9e-54, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 147/347 (42%), Gaps = 27/347 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHPK-----SKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDGSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFY 318 + + ++ ++ Q + S+ +F+ ++ + + K + I+ L Sbjct: 228 TGIHTLM-VAKQAAQLSDSLLVRFAAQVHDLGKGVTPPSEWPSHKLHCHTGLNIIESLCE 286 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362 L + + ++N+ D L+VL + W+KP Sbjct: 287 RIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333 >gi|229514072|ref|ZP_04403534.1| tRNA nucleotidyltransferase [Vibrio cholerae TMA 21] gi|229349253|gb|EEO14210.1| tRNA nucleotidyltransferase [Vibrio cholerae TMA 21] Length = 403 Score = 215 bits (549), Expect = 9e-54, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 146/347 (42%), Gaps = 27/347 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEMFLQVLRDCGALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFY 318 + + ++ ++ Q + S+ +F+ ++ + K + I+ L Sbjct: 228 TGIHTLM-VAKQAAQLSDSLLVRFAAQVHDLGKGVTPPSEWPRHKLHCHTGLNIIESLCE 286 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362 L + + ++N+ D L+VL + W+KP Sbjct: 287 RIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333 >gi|217969133|ref|YP_002354367.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Thauera sp. MZ1T] gi|217506460|gb|ACK53471.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Thauera sp. MZ1T] Length = 408 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 134/347 (38%), Gaps = 28/347 (8%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ +VGGAVRD+L+ L V+D D + P+ ++ + + P + T + Sbjct: 2 QAYVVGGAVRDALLGLPVKDRDWVVVGSTPEEMLARGFRPVGRDFPVFLHPHTNE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y V + D LRRD TINA+ + G++ID GG Sbjct: 57 ---EYALARTERKSGHGYTGFVCHASPEVTLEEDLLRRDLTINAIARAEDGRLIDPCGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 DL R + + A ED LRILR RF A + + + + L+ ++ + L Sbjct: 114 RDLAARVFRHVSPA---FAEDPLRILRVARFSARFTDFELAPETLELMRAMVVAGEVDHL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 +ER+W E+ + L P I + G + + LD+L + + E+ + +I Sbjct: 171 VAERVWQELARGLMEARPSRMIRVLRACGALARLLPE-----LDRLFGIPQPEK-YHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIR---YFLISFFNCNFNQKTLSIPEIKKLF 317 D+ ++++ +A +++ ++ + S +++ Sbjct: 225 DTGEHVLMVLDHAAAAD-EPLAVRWACLLHDLGKGDTPAHLLPHHYGHEAASARRAREVS 283 Query: 318 YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 L +A + L ++ I P Sbjct: 284 ERLKAPADCRDLAEMVAREHGILARAHELRAETMVKLIERCDGLRRP 330 >gi|332072349|gb|EGI82832.1| poly A polymerase head domain protein [Streptococcus pneumoniae GA17570] Length = 325 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 148/333 (44%), Gaps = 13/333 (3%) Query: 81 KIICRKKYFDITTLRSD-LITDGRYAK-VVFTRDWKADSLRRDFTINALYADQQGKVIDY 138 ++ + +++TT R++ + D R V F R + D RRDFT+NA D+ G+++D Sbjct: 1 MVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDL 60 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLK 198 GL DL + ++ +G A R ED LRI+R FRF A G ++ + A L+ Sbjct: 61 FHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLG-FALEPETFKAMKTLTPLLE 119 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 +S ER + E +KLL A + M + + D+ S D+L+++ + E F + Sbjct: 120 KISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYL-PDM-ASSQDKLNRLFDLETDFTF 177 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 + S + L+ + ++ S K + R+ + ++ + K+ Y Sbjct: 178 E-SSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGEL--SKRDCY 234 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPP 377 + +++ + A + I + + K + GD ++K YG P Sbjct: 235 RFDIDLLLQAENLRQA----QGKEVNLQAITEKYQSLTIHDKKEIQINGDILIKEYGYQP 290 Query: 378 GKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 G +G IL + ++ + ++E +H LR+ Sbjct: 291 GPDLGEILTEIEFAIVDGELENNREAIHAYLRE 323 >gi|303256720|ref|ZP_07342734.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47] gi|302860211|gb|EFL83288.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47] Length = 468 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 116/279 (41%), Gaps = 18/279 (6%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 I++ L K+ IVGGAVRD L+ +D D+AT P+ V ++ + I Sbjct: 28 AISVCQKLQDAGYKAFIVGGAVRDLLIGAKPKDFDVATDATPEEVKKVTRRA----IIIG 83 Query: 75 ISYGTIKIICRKKYFDITTLRSDLI------TDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + + + ++ T R DG + D+ RRDFT+NA+Y Sbjct: 84 RRFRLVHVNKGAETIEVATFRGFAKQGVTKDEDGVITNDNVFGEQYEDAARRDFTVNAMY 143 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 D G + DY GL+D+R R I+ IGD R ED +RILR R A G ID Sbjct: 144 FDPISGDLYDYHHGLDDIRERKIRMIGDPATRYREDPVRILRAIRIAAKLG-FTIDEKTA 202 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGG------IFKEIFLDVQEI 241 + L + S R+ E +K++ + + + + M +F + Sbjct: 203 APMHYMQTLLLSVPSARLADEFSKMVLSGSAVACMELMNRYDINIPIPLFDVLKRTFGLP 262 Query: 242 SLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILS 280 + + + +A I + F VL+ + K+ + Sbjct: 263 FVRKGLERCDARVALGKSISTSFLFAVLLWHEMKEEVAK 301 >gi|294789547|ref|ZP_06754782.1| multifunctional CCA protein [Simonsiella muelleri ATCC 29453] gi|294482484|gb|EFG30176.1| multifunctional CCA protein [Simonsiella muelleri ATCC 29453] Length = 416 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 145/380 (38%), Gaps = 61/380 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ L V+D D + ++ + + P + T + Sbjct: 3 KVYLVGGAVRDALLGLDVKDRDWVVVGAEAADLLAQGFRAVGQDFPVFLHPTTHE----- 57 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y F D + D LRRD TINA+ D+ G +ID GG Sbjct: 58 ---EYALARTERKISKGYTGFQFYADKSVTLEQDLLRRDLTINAMAQDEHGNIIDPFGGQ 114 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGLKILS 201 +DL+N+ ++ + A ED +RILR RF A YG ++ L+ + A + L Sbjct: 115 SDLQNKILRHVSAA---FAEDPVRILRIARFAARYGFTVAPETMQLMCDMVANGEVDALV 171 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI--------SLDQLSQVIEAE 253 +ER+W E K L KNP I + G + + +V + ++ Sbjct: 172 AERVWQEFAKGLMEKNPRKMIEILRECGALRVLLPEVDALFGVPQRADFHPEICSGEHTL 231 Query: 254 QVFEWKIDSLL----RFIVLISWQDK-------------------KSILSMAKKFSLPRE 290 V + D R+ L+ K K + ++ ++ +P+ Sbjct: 232 LVLQRAADLGFGLPERYAALLHDLGKALTPIDILPKHIGHDMRGVKLVRAVNVRWRVPKA 291 Query: 291 IRYF--LISFFNCNFNQ------KTLSIPEIKKLFYLYGDKVMIAKLKIFLA-----LHY 337 L+ F+ +Q ++ +K+ + A L + LA L Sbjct: 292 CGELAELVCKFHIRLHQIGQAKRAEAALKVLKETDAFRRPERFQAALNVCLADTQGRLGR 351 Query: 338 NNLTHQDTCFILQVLSDIIH 357 N + L VL+ H Sbjct: 352 ENAAYPQREHWLAVLAAAQH 371 >gi|89895037|ref|YP_518524.1| hypothetical protein DSY2291 [Desulfitobacterium hafniense Y51] gi|89334485|dbj|BAE84080.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 84/397 (21%), Positives = 159/397 (40%), Gaps = 27/397 (6%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT--SISYGTIKI- 82 +VGG VRD L+ + QD+D R ++ R + + +GT ++ Sbjct: 471 GYSVFVVGGFVRDILLKVPTQDLDFVIEGDGHAFARALAQ-RLQDVQVVFHDQFGTARLD 529 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDY 138 + D+ + R + + V + D RRDFTINA+ G+++DY Sbjct: 530 FADGSHLDVASSRREDYSSPGALPQVEESRLRDDMFRRDFTINAMAIAVNSVRYGELVDY 589 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGL 197 GGL DL+ I+F+ + +ED RILR RF YG + ++ + + L Sbjct: 590 YGGLRDLKQGEIRFLHN--LSFIEDPTRILRALRFAGRYGFRLAKETREGLYTALDAGVL 647 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQ-EISLDQLSQVIEAEQV 255 + LS ER E +L + + G+F + F ++ + + L+Q I E+ Sbjct: 648 QKLSIERFTEEFMHMLSELKFGVMGESLLDMGVFPKWFGAELPWDFTHPGLNQAISPER- 706 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 ++++ + D+ + +K L RE++ FF+ +L + E Sbjct: 707 ---------KWLICLRRMDRSQFERIEEKLRLARELKGIAYKFFDIMDGLLSLGVGEKGS 757 Query: 316 LFYLYGDKVM----IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 Y + + + + L + D F + + K + G + Sbjct: 758 EASPYAREKISLKSLDQYLEGLPALLMEVLLWDERFRDSLEAYTEAVKAIHQTVDGTALR 817 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++G+ G ++G IL + W+ Q +E+ +L Sbjct: 818 QWGVKEGPEIGRILKAVRLAWLEGKLQTEEEEKEFVL 854 >gi|269792361|ref|YP_003317265.1| CBS domain containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099996|gb|ACZ18983.1| CBS domain containing protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 867 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 85/403 (21%), Positives = 159/403 (39%), Gaps = 21/403 (5%) Query: 23 NKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKI 82 K +VGG VRD L+ +D+D+ ++ S + + YGT + Sbjct: 469 EGMGLKVFLVGGFVRDLLLGRPNEDVDMVCEGDAVPLLERLSSMGLQ-VSIHRRYGTGTV 527 Query: 83 IC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ---GKVIDY 138 + D+ T R + V K D RRDF++NA+ G ++DY Sbjct: 528 RFPDGRKLDLATARREFYEYPVAQPKVQMDSLKHDLYRRDFSVNAMAVSLSPRWGMLVDY 587 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAKKGL 197 GG DL ++ + + +ED RILR R G + D++ L AS L Sbjct: 588 FGGRGDLNRGQLRVLHN--LSFVEDPTRILRGVRLEGRLGFRMSQDTERLAASCVKGGML 645 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE---- 253 +LS ++ SE+ + +NP+ A+ + G + +F V +S+D L + + + Sbjct: 646 SLLSGPKLRSELELIFRERNPIWAVDRLCGLGAWDAMFPGVP-LSIDGLRALRKLDVFVR 704 Query: 254 ----QVFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTL 308 + +S L F+ L+ + + S + SL ++ R L + N +T Sbjct: 705 RLGRDLPPLGEESWLAFLGALLYFGNPWGGRSAMDRLSLSQKERGVLEAILNGLGTLETA 764 Query: 309 SIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGD 368 + + + + A + IL L+ + L+G Sbjct: 765 IGGKGDIRWSSLCRALDGVNRVVLFAWAGITSRWRVRRRILLYLTRLCKVSPM---LSGR 821 Query: 369 DVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKL 411 D++ G+P G VG +L + ++ +++ +L++L Sbjct: 822 DLIDLGVPKGPAVGAMLSRLRFARLDGEVDTLEDERAWVLKRL 864 >gi|30249583|ref|NP_841653.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Nitrosomonas europaea ATCC 19718] gi|73619813|sp|Q82U82|CCA_NITEU RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|30138946|emb|CAD85525.1| Poly A polymerase family:HD domain [Nitrosomonas europaea ATCC 19718] Length = 412 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 140/352 (39%), Gaps = 37/352 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K VGG+VRD L+ L V+D D + P+ ++R+ + K P + T + Sbjct: 2 KIYRVGGSVRDELLGLPVKDQDYVVVGATPEEMVRLGYRPVGKDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 R++ Y + D RRD TINA+ D+ G ++D GG+ Sbjct: 57 ---QYALARTERKIARGYKGFEVYAAPGVTLQEDLARRDLTINAMARDEAGDIVDPFGGI 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKN-IDSDGLVASIKAKKGLKILS 201 DL+ ++ IG A +ED +R+LR RF A +G + ++ L+ I + L Sbjct: 114 ADLQAGILRHIGPA---FVEDPVRVLRVARFAARFGFQIAPETLELMKEIVHTGETEALV 170 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ER+W EI L +P + G I +V D L V + +ID Sbjct: 171 PERVWQEIAHGLMESHPSRMFYVLRECGALARILPEV-----DALFGVPQPAHA-HPEID 224 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + +++I K P E+R+ ++ + K + P+ + Sbjct: 225 TGIHVMMVIDHAASKQ---------YPLEVRFAGLT----HDLGKGTTSPDEWPRHIGHE 271 Query: 322 DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKY 373 + + + + + + +D ++ +H L P T D+++ Sbjct: 272 ARSVELVMGLCERIRVPGES-RDLALLVARFHGDVHRALELRPATIADMLQA 322 >gi|68249804|ref|YP_248916.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 86-028NP] gi|145633006|ref|ZP_01788738.1| hypothetical protein CGSHi3655_05574 [Haemophilus influenzae 3655] gi|145635112|ref|ZP_01790818.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittAA] gi|148826131|ref|YP_001290884.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae PittEE] gi|229844786|ref|ZP_04464924.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 6P18H1] gi|166233856|sp|A5UCK0|CCA_HAEIE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|68058003|gb|AAX88256.1| tRNA nucleotidyltransferase [Haemophilus influenzae 86-028NP] gi|144986232|gb|EDJ92811.1| hypothetical protein CGSHi3655_05574 [Haemophilus influenzae 3655] gi|145267720|gb|EDK07718.1| tRNA nucleotidyltransferase [Haemophilus influenzae PittAA] gi|148716291|gb|ABQ98501.1| hypothetical protein CGSHiEE_05680 [Haemophilus influenzae PittEE] gi|229812167|gb|EEP47858.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 6P18H1] Length = 416 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I ++ + + K P ++ T ++ Sbjct: 2 KIYLVGGAVRDQLLGLPVKDRDWIVVGADHATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+ + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALHGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|219669447|ref|YP_002459882.1| polynucleotide adenylyltransferase region [Desulfitobacterium hafniense DCB-2] gi|219539707|gb|ACL21446.1| Polynucleotide adenylyltransferase region [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 27/397 (6%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT--SISYGTIKI- 82 +VGG VRD L+ + QD+D R ++ R + + +GT ++ Sbjct: 471 GYSVFVVGGFVRDILLKVPTQDLDFVIEGDGHAFARALAQ-RLQDVQVVFHDQFGTARLD 529 Query: 83 ICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQ----GKVIDY 138 + D+ + R + + V + D RRDFTINA+ G+++DY Sbjct: 530 FADGSHLDVASSRREDYSSPGALPQVEESRLRDDMFRRDFTINAMAIAVNSVRYGELVDY 589 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK-NIDSDGLVASIKAKKGL 197 GGL DL+ I+F+ + +ED RILR RF YG + ++ + + L Sbjct: 590 YGGLRDLKQGEIRFLHN--LSFIEDPTRILRALRFAGRYGFRLAKETREGLYTALDAGVL 647 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF-LDVQ-EISLDQLSQVIEAEQV 255 + LS ER E +L + + G+F++ F ++ + + L+Q I E+ Sbjct: 648 QKLSIERFTEEFMHMLSELKFGVMGESLLDMGVFRKWFGAELPWDFTHPGLNQAISPER- 706 Query: 256 FEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKK 315 ++++ + D+ + +K L RE++ FF+ +L + E Sbjct: 707 ---------KWLICLRRMDRSQFERIEEKLRLARELKGIAYKFFDIMDGLLSLGVGEKGS 757 Query: 316 LFYLYGDKVM----IAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVV 371 Y + + + + L + D F + + K + G + Sbjct: 758 EASPYAREKISLKSLDQYLEGLPALLMEVLLWDERFRDSLEAYTEAVKAIHQTVDGTALR 817 Query: 372 KYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLL 408 ++G+ G ++G IL + W+ Q +E+ +L Sbjct: 818 QWGVKEGPEIGRILKAVRLAWLEGKLQTEEEEKEFVL 854 >gi|253700551|ref|YP_003021740.1| hypothetical protein GM21_1929 [Geobacter sp. M21] gi|251775401|gb|ACT17982.1| CBS domain containing protein [Geobacter sp. M21] Length = 875 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 80/414 (19%), Positives = 156/414 (37%), Gaps = 22/414 (5%) Query: 18 ILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPT 73 IL L + D+ VGG VRD L+++ DID+ F+ + + Sbjct: 462 ILHDLGRIGDQLDLTVYAVGGFVRDLLLDIQNMDIDVTVDGDGILFAETFAAQFGCRVKS 521 Query: 74 SISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYA--- 129 +GT I+ D+ + R + V K D RRDFT+N L Sbjct: 522 HQKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTVNTLAIALN 581 Query: 130 -DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI-DSDGL 187 D GK+IDY G DL++R I+ + + +ED R+ R RF K ++ L Sbjct: 582 GDSFGKLIDYFGAYRDLQSRVIRVLHN--LSFVEDPTRVFRAIRFEQRLNFKIAKHTEDL 639 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-----DVQEIS 242 + + + L+ L R+ +E+ ++L K PL I M + G+ + I + + Sbjct: 640 IKNAVKMEFLEKLGGRRLLAELVQILREKEPLKGIGRMASLGLLRFIHPVIELTPAMQGA 699 Query: 243 LDQLSQVIEAEQVFEWKIDSL---LRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFF 299 L++ V+ + + + F+ L ++ + ++ + L+ Sbjct: 700 LEETRYVVSWFDLLYLERPYESWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMR 759 Query: 300 NCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKI-FLALHYNNLTHQDTCFILQVLSDIIHW 358 + ++ + + ++ + L Y+ + + Sbjct: 760 RQSEELIGNLERKLARSEKVDNSEIYFTLKGLGVEVLLYHMAKSRSAEVKRCISLYFTKL 819 Query: 359 KKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 + G+D+ + G+ PG +L +N S+ED L+R+++ Sbjct: 820 DGMHPLIGGEDLKELGVEPGPLYRELLDLVLSARLNGK-SASREDEIRLVREVL 872 >gi|308050970|ref|YP_003914536.1| metal dependent phosphohydrolase [Ferrimonas balearica DSM 9799] gi|307633160|gb|ADN77462.1| metal dependent phosphohydrolase [Ferrimonas balearica DSM 9799] Length = 407 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 126/335 (37%), Gaps = 51/335 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V+D D + +++ + + K P + K Sbjct: 2 QIYLVGGAVRDELLGLKVKDRDHLVVGASAEQMSALGYRQVGKSFPVFLHP--------K 53 Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y F T + D +RRD TINA+ D+QG + D G Sbjct: 54 SGEEYALARTEKKVGHGYGGFDFDAAPTVTLEEDLIRRDLTINAMARDEQGVIHDPYNGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNIDSD-GLVASIKAKKGLK 198 DL R ++ + DA +ED LR+LR RF A + G D L+ + L Sbjct: 114 ADLDARLLRHVSDA---FVEDPLRVLRVARFAARFHGLGFTVADETLALMQQLSDSGELD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS-LDQLSQVIEAEQVFE 257 LS+ER+W E + L +P + +F ++ +S + Q Q ++ Sbjct: 171 YLSAERVWQETERALGEPHPEVYFEVLQRCHALPRLFPELAALSGVPQPPQWHGGLDAWQ 230 Query: 258 WKIDSL-----------LRFIVLISWQDK-------------------KSILSMAKKFSL 287 + +L RF VL+ K K + ++ ++ + Sbjct: 231 HTLMALQQAVALGASGAERFAVLVHDLGKGLTPAEQWPRHIGHEHASIKPVQALCQRLRV 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD 322 P E R + + + L L+ Sbjct: 291 PNEWRELALLVAELHLKVHRAEELKPATLVRLFDQ 325 >gi|116515068|ref|YP_802697.1| hypothetical protein BCc_128 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256922|gb|ABJ90604.1| poly(A) polymerase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 407 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 20/242 (8%) Query: 12 DSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVI 71 + + +L LNK ++ +VGG VRD L+ +D DIAT PD + ++F R Sbjct: 17 SRNSMKVLYRLNKLGYEAYLVGGGVRDLLLGKKPKDFDIATNAKPDEIRKLFKNCRL--- 73 Query: 72 PTSISYGTIKIICRKKYFDITTLRSD--------------LITDGRYAKVVFTRDWKADS 117 + +I + + +++T R+ G + D+ Sbjct: 74 -IGRRFIIAHLIFKNEIIEVSTFRAKNNHLKKNNLYYKKIKTKKGILLSDNTFGKIEEDA 132 Query: 118 LRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAH 176 RRD TINALY + DY+GG+ D++ + I+ IG+A R ED +R+LR RF Sbjct: 133 YRRDITINALYYSIKDFGIRDYIGGIKDIKLKKIRLIGNAETRYREDPVRMLRVIRFSVQ 192 Query: 177 YGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL 236 +ID IK LK + S R+++E KL + + + + Sbjct: 193 LN-MHIDKKTEKPIIKLSNLLKEIPSARLFNESIKLFCFGYGYLTYIRLRKYSLIYPLLP 251 Query: 237 DV 238 + Sbjct: 252 FL 253 >gi|254291646|ref|ZP_04962434.1| tRNA nucleotidyltransferase [Vibrio cholerae AM-19226] gi|150422418|gb|EDN14377.1| tRNA nucleotidyltransferase [Vibrio cholerae AM-19226] Length = 403 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 146/359 (40%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEMFLQVLRDCGALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ + A + S +R+ + K ++ P L+ Sbjct: 228 TGIHTLM---------VAKQAAQLSDSLPVRFA----AQVHDLGKGVTPPSEWPSHKLHC 274 Query: 322 D------KVMIAK---------LKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362 + + + L + + ++N+ D L+VL + W+KP Sbjct: 275 HTGLNIIESLCERIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333 >gi|153831058|ref|ZP_01983725.1| tRNA nucleotidyltransferase [Vibrio cholerae 623-39] gi|148873454|gb|EDL71589.1| tRNA nucleotidyltransferase [Vibrio cholerae 623-39] Length = 403 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 145/347 (41%), Gaps = 27/347 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D RRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEEDLQRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E NK L +P + + + + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWNKSLSTHHPEVFLQVLRDCDALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFY 318 + + ++ ++ Q + S+ +F+ ++ + + K + I+ L Sbjct: 228 TGIHTLM-VAKQAAQLSDSLLVRFAAQVHDLGKGVTPPSEWPSHKLHCHTGLNIIESLCE 286 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362 L + + ++N+ D L+VL + W+KP Sbjct: 287 RIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333 >gi|254522222|ref|ZP_05134277.1| tRNA nucleotidyltransferase [Stenotrophomonas sp. SKA14] gi|219719813|gb|EED38338.1| tRNA nucleotidyltransferase [Stenotrophomonas sp. SKA14] Length = 428 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 80/417 (19%), Positives = 145/417 (34%), Gaps = 75/417 (17%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ D D + P ++ + P + T + Sbjct: 24 KIYLVGGAVRDRLLQRPAGDRDWVVVGATPAQMEAQGYTAVGRDFPVFLHPQTGE----- 78 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D RRDFTINA+ D+ G ++D GG Sbjct: 79 ---EYALARTERKSGRGYRGFVVDADPAVTLEEDLQRRDFTINAIACDEDTGSLVDPYGG 135 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + DL R ++ +G A +ED LR+LR RF A + ++ L+ + A L Sbjct: 136 VRDLEQRVLRHVGPA---FVEDPLRVLRAARFMARFAPLGFSVAPETMALMREVAASGEL 192 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L ER+W E+ K L + P + +++ I + L+ L V + + F Sbjct: 193 DALVPERVWQELRKALVCECPSAFLRTLHDAHALGPILPE-----LEALYGVPQRAE-FH 246 Query: 258 WKIDSLLR-------------------FIVLISWQDK-------------------KSIL 279 ++D+ F L K K + Sbjct: 247 PEVDTGTHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPDEWPRHIMHEQRGLKPLK 306 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG------DKVMIAKLKI-F 332 ++ + +P E + + + N + + L G +A++ + Sbjct: 307 ALCARLKIPTEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCC 366 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 A L +D + + + + D+ + G +G L + Sbjct: 367 EADKRGRLGFEDAEYPQG--ETLKRLHQAALSVQARDLDTTHLK-GPAIGEALAKAR 420 >gi|229524432|ref|ZP_04413837.1| tRNA nucleotidyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338013|gb|EEO03030.1| tRNA nucleotidyltransferase [Vibrio cholerae bv. albensis VL426] Length = 403 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 146/359 (40%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ +T K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQTVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEVFLQVLRDCDALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ + A + S +R+ + K ++ P L+ Sbjct: 228 TGIHTLM---------VAKQAAQLSNSLPVRFA----AQVHDLGKGVTPPSEWPSHKLHC 274 Query: 322 D------KVMIAK---------LKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362 + + + L + + ++N+ D L+VL + W+KP Sbjct: 275 HTGLNIIESLCERIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333 >gi|229846289|ref|ZP_04466401.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 7P49H1] gi|229811293|gb|EEP47010.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Haemophilus influenzae 7P49H1] Length = 416 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 33/316 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ L V+D D I ++ + + K P ++ T ++ Sbjct: 2 KIYLVGGAVRDQLLGLPVKDRDWIVVGADHATLLSLGYQQVGKDFPVFLNPKT-----KE 56 Query: 87 KYFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R G T + D +RRD TINA+ + G++ID GG DL Sbjct: 57 EYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEDGEIIDPYGGKQDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHY---GEKNI-DSDGLVASIKAKKGLKILS 201 NR ++ I A ED LR+LR RF A Y G K ++ L+ + L+ L+ Sbjct: 117 ENRILRHISPA---FSEDPLRVLRVARFAARYHSLGFKIASETLALMTELALSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E K L KNP ++ G +F ++ D L V + ++D Sbjct: 174 AERVWLETEKALNEKNPEIYFETLHKTGALSVLFSEI-----DALYGVPNPVK-HHPEVD 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 S + ++++ K +++ + + + + C+ K L+ I Y + Sbjct: 228 SFIHTMLVL-----KQAVNLTENNPILNKSAVRFAAI--CHDLGKALTPQNILPHHYGHE 280 Query: 322 D------KVMIAKLKI 331 + + +LK+ Sbjct: 281 QAGIKPTRSLCKRLKV 296 >gi|319761322|ref|YP_004125259.1| polynucleotide adenylyltransferase region protein [Alicycliphilus denitrificans BC] gi|317115883|gb|ADU98371.1| Polynucleotide adenylyltransferase region protein [Alicycliphilus denitrificans BC] Length = 415 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 71/366 (19%), Positives = 136/366 (37%), Gaps = 48/366 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V D D + P+ ++ + P + T + Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGARPEDMVARGFVPVGRDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVF----TRDWKADSLRRDFTINALYADQQ----GKVIDY 138 + R++ + Y V + D RRD TINA+ A + D Sbjct: 57 ---EYALARTERKSGRGYRGFVVQASPDVTLEEDLSRRDLTINAIAASADWIGADGLFDP 113 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKG 196 GG DL R ++ + DA ED +RILR RF A + + + + L+ + Sbjct: 114 YGGARDLERRVLRHVTDA---FREDPVRILRVARFAARFTDFTVAPETMALMREMVQAGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L +ER+W E+++ L + P + G + +V ++L V + + Sbjct: 171 ADHLVAERVWQELSRGLMEEKPSRMFDVLRACGALAVVLPEV-----ERLWGVPQRAE-H 224 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-----------FNCNFNQ 305 ++D+ + ++ +L MA + S P +R+ ++ + Sbjct: 225 HPEVDTGVHLMM---------VLDMAARLSAPLAVRFACLTHDLGKGTTPADVLPRHIGH 275 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPL 365 + S +K + V +L +A + N+ ++ + P Sbjct: 276 EQRSGKLLKAVAERLRVPVDCRELADVVAREHGNIHRSGELGATALVRLLERCDAIRKPA 335 Query: 366 TGDDVV 371 DD++ Sbjct: 336 RLDDIL 341 >gi|241765925|ref|ZP_04763854.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] gi|241364122|gb|EER59337.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] Length = 413 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 62/282 (21%), Positives = 119/282 (42%), Gaps = 37/282 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V D D + P++++ + + P + T + Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGATPEQMLALGYLPVGRDFPVFLHPETRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ----GKVIDY 138 + R++ + Y V + D RRD TINA+ + + D Sbjct: 57 ---EYALARTERKSGRGYRGFVVQSSPDVTLEEDLSRRDLTINAIASSADASGATGLFDP 113 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL--VASIKAKKG 196 GG D+ R ++ + DA +D +RILR RF A + + ++ + L + S+ A Sbjct: 114 YGGARDIAARVLRHVTDA---FHDDPVRILRVARFAARFTDFSVAPETLALMRSMVAHGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L +ER+W E+ + L + P + G K + +V D+L V + + + Sbjct: 171 ADHLVAERVWQELARGLMEEKPSRMFEVLRACGALKVVLPEV-----DRLWGVPQRAE-Y 224 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF 298 ++D+ + ++ +L MA + P +R+ ++ Sbjct: 225 HPEVDTGVHLMM---------VLDMAARLQAPLTVRFACLTH 257 >gi|332289921|ref|YP_004420773.1| phosphodiesterase/2'nucleotidase/phosphatase [Gallibacterium anatis UMN179] gi|330432817|gb|AEC17876.1| phosphodiesterase/2'nucleotidase/phosphatase [Gallibacterium anatis UMN179] Length = 392 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 85/344 (24%), Positives = 145/344 (42%), Gaps = 33/344 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L+V+D D + P+ +++ K P + T ++ Sbjct: 6 KTYLVGGAVRDRLLGLAVKDRDWLVVHATPEWLLKQGYIQVGKDFPVFLHPQT-----KE 60 Query: 87 KYFDITTLRSD-LITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 +Y T R + G Y + D RRD TINA+ D G + D G+ DL Sbjct: 61 EYALARTERKNGRGYTGFYCDFSPDITLEQDLKRRDLTINAIAQDIDGNLYDPYHGIQDL 120 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + R ++ I A ED LRILR RF A + N ++ L+ S+ + L L+ Sbjct: 121 KQRKLRHISPA---FSEDPLRILRVARFAARFYAFNFTIAPETVALMKSMVKQGELADLT 177 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 ERIW E K L + ++ G +F + + + + ++ Sbjct: 178 VERIWLETEKALLSPRCDIYFSILHQIGA-TSLFPEFKPLF----------QSRYKLLTQ 226 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 SL R +L+ Q+ +F L + L+S + Q+ I ++++L Y Sbjct: 227 SLKRLNLLLEDQNDDQAPLF--RFVL---LCALLVSSETLSATQRKQLIEKVQQLCQRYK 281 Query: 322 ---DKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 +AKL + L ++ H ++ +L + W+KP Sbjct: 282 IPNHYSELAKLAMQFILPFSQTEHLSANDVIDLLDQLDCWRKPQ 325 >gi|222056094|ref|YP_002538456.1| hypothetical protein [Geobacter sp. FRC-32] gi|221565383|gb|ACM21355.1| CBS domain containing protein [Geobacter sp. FRC-32] Length = 875 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 87/425 (20%), Positives = 161/425 (37%), Gaps = 30/425 (7%) Query: 12 DSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 + IL L + D VGG VRD LMN+ D+D+ F+ Sbjct: 456 APRIQQILHELGRVGDSLDVPVFAVGGFVRDLLMNVPNLDMDVTVEGDGILFAETFAGQY 515 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + +GT I+ D+ + R + V K D RRDFTIN Sbjct: 516 GCRVKSHDKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTINT 575 Query: 127 LYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 L + G ++D+ G DL++ I+ + + +ED R+ R RF Sbjct: 576 LAIRLNESEFGVMLDFFGAQRDLQDHLIRVLHN--LSFVEDPTRVFRAIRFEQRLDFTIA 633 Query: 183 -DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ L+ + L+ L +R+ +E+ +L PL AI M + G+ + I ++ E+ Sbjct: 634 KHTENLIKNAVKMDFLEKLGGKRLLTELVYILRENEPLKAIERMASFGLLRFIHPEL-EL 692 Query: 242 SLDQLSQVIEAEQVFEWKIDSL----------LRFIVLISWQDKKSILSMAKKFSLPREI 291 + + + EA ++ W D L + F+VL + + ++ Sbjct: 693 TTGTRNMLEEARRIISW-FDLLFLNRAYERWAVYFLVLCESLTHDQLWGACTRLAVSEHY 751 Query: 292 RYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKV--MIAKLKIFLALHYNNLTHQDTCFIL 349 R L +I + + +V ++ L + + L+ T + Sbjct: 752 REKLFETRRQGEEALATIEKKIARTGAIEKSEVYFLLKDLPVEVLLYLMAKTGSEEVKKW 811 Query: 350 QVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLH---H 406 L F +TG D+ + +PPG ++L + ++ +++L H Sbjct: 812 LSLYFTQLQNVRCF-VTGHDLKRLQVPPGPLYKDLLDLVLKARLDGRVISREDELELVRH 870 Query: 407 LLRKL 411 L+KL Sbjct: 871 KLKKL 875 >gi|152978747|ref|YP_001344376.1| polynucleotide adenylyltransferase region [Actinobacillus succinogenes 130Z] gi|171704276|sp|A6VN94|CCA_ACTSZ RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|150840470|gb|ABR74441.1| Polynucleotide adenylyltransferase region [Actinobacillus succinogenes 130Z] Length = 400 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 20/234 (8%) Query: 30 CIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRD L++L V+D D + PD ++ + K P I T + Sbjct: 4 YLVGGAVRDQLLHLPVKDRDWLVVGSTPDELLSLGYLQVGKDFPVFIHPETHE------- 56 Query: 89 FDITTLRSDLITDGRYAKVV--FTRD--WKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ + Y + F+ D + D +RRD TINA+ D+ GK+ D G+ D Sbjct: 57 -EYALARTEKKSGSGYTGFICDFSPDITLEDDLIRRDLTINAIAQDKNGKLYDPYHGIED 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAK--KGLKIL 200 L NR ++ I ED LR+LR RF A + I + L K L+ L Sbjct: 116 LNNRLLRHISP---SFEEDPLRVLRVARFAAKFYHLGFAIAPETLELMKKLSTQGELQHL 172 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 ++ER+W E K L +NP + + ++ IS++ + A + Sbjct: 173 TAERVWLETEKALMTENPEIYFQTLLKIDALPALMPELATISVENFQYAMTALK 226 >gi|229527052|ref|ZP_04416447.1| tRNA nucleotidyltransferase [Vibrio cholerae 12129(1)] gi|229335449|gb|EEO00931.1| tRNA nucleotidyltransferase [Vibrio cholerae 12129(1)] gi|327484938|gb|AEA79345.1| tRNA nucleotidyltransferase [Vibrio cholerae LMA3894-4] Length = 403 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 144/359 (40%), Gaps = 51/359 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEEDLLRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEVFLQVLRDCDALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG 321 + + ++ + A + S +R+ + K ++ P L+ Sbjct: 228 TGIHTLM---------VAKQAAQLSDSLPVRFA----AQVHDLGKGVTPPSEWPSHKLHC 274 Query: 322 D------KVMIAKLKIF-----LALH-------YNNLTHQDTCFILQVLSDIIHWKKPL 362 + + ++++ LAL + L+VL + W+KP Sbjct: 275 HTGLNIIESLCERIRVPNEFRDLALAVCAQHSNIHRANELKPATKLKVLGLLDVWRKPE 333 >gi|94309124|ref|YP_582334.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Cupriavidus metallidurans CH34] gi|166233875|sp|Q1LS11|CCA_RALME RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|93352976|gb|ABF07065.1| fused tRNA nucleotidyl transferase ; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Cupriavidus metallidurans CH34] Length = 414 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 72/344 (20%), Positives = 131/344 (38%), Gaps = 33/344 (9%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ QD D + P + K K P + T Sbjct: 2 QVYAVGGAVRDQLLGKPSQDRDYVVVGATPADMEAAGFKPVGKDFPVFLHPHT------- 54 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYA------DQQGKVI 136 + R++ T Y F + D +RRD TINA+ + G VI Sbjct: 55 -KAEYALARTERKTAVGYKGFAFYTGADVTLEEDLVRRDLTINAMAQAVDEHDNLVGPVI 113 Query: 137 DYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAK 194 D GG DL R + + DA ED +RILR RF A + E + + L+ I Sbjct: 114 DPYGGQKDLAARKFRHVSDA---FAEDPVRILRVARFAARFHEFTVAPETVALMRKIVDA 170 Query: 195 KGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 + L ER+W E+++ L P + G + + LD+L V + + Sbjct: 171 GEVDALVPERVWQELSRGLMEAKPSRMFDVLRECGALAHLLPE-----LDRLWGVPQRPE 225 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLI--SFFNCNFNQKTLSIPE 312 + ++D+ + +++I + + ++ ++ + + + Sbjct: 226 -YHPEVDTGVHVMMVIDYAASVGASLPVRFAAMAHDLGKGTTPEDMLPRHIGHEQRGVKL 284 Query: 313 IKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 ++ + +L + +A + N+ H+ T F L+ ++ Sbjct: 285 LEAICQRLRVPNDCRELALVVAREHGNI-HRSTEFGAAALTRLV 327 >gi|78044937|ref|YP_360768.1| polyA polymerase family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997052|gb|ABB15951.1| polyA polymerase family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 864 Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 98/416 (23%), Positives = 172/416 (41%), Gaps = 34/416 (8%) Query: 14 DLINILSL-LNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKT--RYKV 70 +LIN++ ++ + +VGG VRD L+ +D+DI + + KT K Sbjct: 460 ELINVVGKWASQLGMRVFLVGGIVRDLLLGHKQKDLDIVVEGDALVLAQEVGKTLSAIKF 519 Query: 71 IPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY- 128 IP + T II + D +T R + V + D RRDFTIN++ Sbjct: 520 IP-HERFKTASIILKNGQKIDFSTSRVEFYQHPAALPEVEVSTIREDLYRRDFTINSMAI 578 Query: 129 ---ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-S 184 G++ D GGL DLR I+ + + +ED RILR RF + K + + Sbjct: 579 EITYGHIGELFDPFGGLLDLREGIIRVLHN--LSFVEDPTRILRALRFLGRFNFKLEENT 636 Query: 185 DGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDV--QEIS 242 + L+ A L ++SS RI E+ + K+ L + + + G+F+E+F +E Sbjct: 637 EKLLVDAIAGGFLNLVSSARILYELKLIFAEKDILKILKFLKHYGVFQEVFPKAFYEEDY 696 Query: 243 LDQ-LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNC 301 L + + +E ++ + L ++ + ++ + I KK+ L E L Sbjct: 697 LKRYFNYTVEYFRLLKEMKIPWLHGVMGVYAKNLEGIEEFIKKYPLTGEEEEVL------ 750 Query: 302 NFNQKTLSIPEIKKLFYL----YGDKVMIAKLKI----FLALHYNNLTHQDTCFILQVLS 353 Q L I E KL L G ++ K+ + AL+ + Sbjct: 751 --RQGALGIKEALKLLSLSREVKGVEIFETLTKLPPEGYWALYLLLDRFRARERFKTYFE 808 Query: 354 DIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409 ++ K +TG+D+ G+ PG IL K I+ + E++ ++ + Sbjct: 809 ELRFIKPE---ITGEDLKALGLKPGPLYREILHKIKMLKIDGVLKNKDEEILYVKQ 861 >gi|297581070|ref|ZP_06942995.1| tRNA nucleotidyltransferase [Vibrio cholerae RC385] gi|297534896|gb|EFH73732.1| tRNA nucleotidyltransferase [Vibrio cholerae RC385] Length = 403 Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 145/347 (41%), Gaps = 27/347 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+ I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAKETMQLMTKITQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + G + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEVFLQVLRDCGALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 SLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFY 318 + + ++ ++ Q + S+ +F+ ++ + K + I+ L Sbjct: 228 TGIHTLM-VAKQAAQLSDSLPVRFAAQVHDLGKGVTPSAEWPSHKLHCHTGLNIIESLCE 286 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDT---CFILQVLSDIIHWKKPL 362 L + + ++N+ D L+VL + W+KP Sbjct: 287 RIRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPE 333 >gi|297584686|ref|YP_003700466.1| CBS domain-containing protein [Bacillus selenitireducens MLS10] gi|297143143|gb|ADH99900.1| CBS domain containing protein [Bacillus selenitireducens MLS10] Length = 869 Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 95/430 (22%), Positives = 171/430 (39%), Gaps = 38/430 (8%) Query: 8 KWFHDSDLINILSLLNKGED----KSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIF 63 K H DL +ILSL+ K D + ++GG VRD L+ + +D+DI + Sbjct: 452 KQLH-PDLFSILSLIGKTADHLNMSAYLIGGMVRDLLLQHANEDMDIVVEGDGIVLAEEL 510 Query: 64 SKTRYKVIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDF 122 + I T + T Y D+T+ R++ V K D RRDF Sbjct: 511 KASYGGQIRTHAEFRTATWKHPAGYKIDLTSARTEYYDFPAALPKVELSTIKEDLFRRDF 570 Query: 123 TINALYA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYG 178 TINA+ + G ++DY G DL I+ + + +ED RILR RF +G Sbjct: 571 TINAMGICISGKEFGDLLDYFHGFEDLNKGRIRTLYN--LSFVEDPTRILRAVRFENRFG 628 Query: 179 EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLD- 237 + D +A A L +S R SE++++ ++PL + + I I Sbjct: 629 FQMDDQTEDLAIQSANNLLS-VSKSRQSSELSRMFYEEDPLQSFKRLKQLTITSYILSSK 687 Query: 238 VQEISLDQLSQVIE------AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREI 291 VQE ++ + A + ++ S + +I + ++ +K + ++ ++ Sbjct: 688 VQEDQVENRIRTFHHFRSACAPEQSDFSPASWIGYIAMFYYEVEKEFHQLLG-YAERKQE 746 Query: 292 RYFLISFFNC----NFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCF 347 R L + + S+ +I +L + D+ + A H T Sbjct: 747 RKLLHDIRAVIPLIHRIRSGSSLSDIHRLLVHFNDEAIAA-----------GAAHCLTDA 795 Query: 348 ILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHL 407 +L ++ + F L+G D++ G P +L + + + +E L H Sbjct: 796 SDLLLDYMLKRQTLTFSLSGQDLINAGYTPSPAFKEMLFEAELYQLEHP-EYDREALLHY 854 Query: 408 LR-KLIASSQ 416 + K AS++ Sbjct: 855 IEDKYPASTK 864 >gi|317128612|ref|YP_004094894.1| polynucleotide adenylyltransferase region [Bacillus cellulosilyticus DSM 2522] gi|315473560|gb|ADU30163.1| Polynucleotide adenylyltransferase region [Bacillus cellulosilyticus DSM 2522] Length = 385 Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 82/407 (20%), Positives = 172/407 (42%), Gaps = 32/407 (7%) Query: 11 HDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKV 70 ++S I+IL+ L ++ IVGGAVRD L+ DIDI T ++ IF + Sbjct: 4 NESAAIHILNSLESYGFEAFIVGGAVRDKLLKRKPNDIDICTKASIKQIQSIFPSS---- 59 Query: 71 IPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALYAD 130 I ++GT+ + + +++T R+ +G +D RDFTINA+ D Sbjct: 60 IHVGSNHGTLIVKIKGCTLEVSTYRA---RNGEKP------TIYSDLSLRDFTINAMAID 110 Query: 131 QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGLVAS 190 +G +ID G ++ + I+ + + R +ED +R+LR R +I++ Sbjct: 111 IRGNIIDPYDGQLAIKRKVIEVV-QSGQRFIEDPIRLLRAIRIAKQLN-FSIENKTSALL 168 Query: 191 IKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEI---FLDVQEI-SLDQL 246 + +K +++ERI +E K++ A + + +G + + I F + + I SL + Sbjct: 169 TDSAHLIKEVAAERITAEFQKIVTAVLNKKEVCELVSGDVVQNIPFMFPEKKVIESLKRY 228 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQK 306 + EW + S+ D + + + L +++ + Sbjct: 229 PYEFIVKHHVEW------WMLASFSY-DSNETVHILSELKLSKKVVKDITFISKLVIEVI 281 Query: 307 TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLT 366 + S + YL G + +I K+ + + + +L + +T Sbjct: 282 STSWSDYH--LYLLGRERLIFAEKLLSLIQ---MRENKSSILLDKYDSLPIHDNKELAIT 336 Query: 367 GDDVVKYG-IPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLI 412 G +++++ GK +G+ L ++ + + ++ + + L++ I Sbjct: 337 GQELLEWFPQERGKWIGDRLKKVEEAVVLNKVANEKKAIFNSLKREI 383 >gi|222109737|ref|YP_002552001.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax ebreus TPSY] gi|254813690|sp|B9MCK1|CCA_ACIET RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|221729181|gb|ACM32001.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Acidovorax ebreus TPSY] Length = 425 Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 68/359 (18%), Positives = 129/359 (35%), Gaps = 48/359 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V D D + PD ++ + P + T + Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGATPDDMVARGYLPVGRDFPVFLHPETRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQG----KVIDY 138 + R++ + Y V + D RRD TINA+ A + D Sbjct: 57 ---EYALARTERKSGRGYRGFVVQTSPDVTLEEDLSRRDLTINAIAASADWTGAEDLFDP 113 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKG 196 GG DL+ R ++ + D ED +RILR RF A + + + + L+ + Sbjct: 114 YGGARDLQARVLRHVTD---SFREDPVRILRVARFAARFTDFTVAPETMQLMREMVHDGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L ER+W E+ + L P + + G + +V ++L V + + + Sbjct: 171 ADHLVPERVWQELARGLMEPQPSRMFDVLRDCGALAVVLPEV-----ERLWGVPQRPE-Y 224 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-----------FNCNFNQ 305 ++D+ + ++ +L MA P +R+ ++ + Sbjct: 225 HPEVDTGVHLMM---------VLDMAAHLQAPLTVRFACLTHDLGKGTTPHDVLPRHIGH 275 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + S +K + V +L +A + N+ ++ + P Sbjct: 276 EQRSARLLKAVCERLRVPVECRELADVVAREHGNIHRSGDLGAAALVRLLERCDAIRKP 334 >gi|84625338|ref|YP_452710.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879299|ref|YP_202539.6| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xanthomonas oryzae pv. oryzae KACC10331] gi|123520950|sp|Q2NZ41|CCA_XANOM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|84369278|dbj|BAE70436.1| tRNA nucleotidyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 410 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 80/415 (19%), Positives = 149/415 (35%), Gaps = 75/415 (18%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L+ D D + R+ K K P + + Sbjct: 2 KIYLVGGAVRDALLGQPAGDRDWVVVGADQARMEAQGFKPVGKDFPVFLHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G+ D G Sbjct: 54 SGEEYALARTERKSGRGYRGFVVDADPLVTLEEDLLRRDFTINAIARDEDTGEFFDPYNG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL+ R ++ +G A +ED +R+LR RF A ++ L+ + A L Sbjct: 114 ARDLQARVLRHVGPA---FVEDPVRVLRAARFMARLAPLGFTIAPETAALMREMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L ER+W E+ + L P + +++ + I ++ D L V + Q F Sbjct: 171 DSLVPERVWQELRRALTCAQPSAFLRTLHDTDGLRAILPEI-----DALYGVPQRAQ-FH 224 Query: 258 WKIDSLLR-------------------FIVLISWQDK-------------------KSIL 279 ++D+ + F L K + Sbjct: 225 PEVDTGIHQEMVSDMAARIAPGDALVGFAALTHDLGKALTPPEQWPRHIMHEQRGVAPLQ 284 Query: 280 SMAKKFSLPREIRYFLISFFNCNFN------QKTLSIPEIKKLFYLYGDKVMIAKLKI-F 332 ++ ++ +P++ R + + N + ++ E+ + IA+L + Sbjct: 285 ALCERLKVPQDYRQLAVIACREHLNVHRLPELRDRTVHELLVRCDAFRRPERIAQLALVC 344 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 A L ++ + +++ + D+ G+ G ++G L Sbjct: 345 EADKRGRLGSEEAAYPQG--AELKRLHAAASAINARDLAADGLQ-GPQIGEALTK 396 >gi|152985385|ref|YP_001346122.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa PA7] gi|166233869|sp|A6UZ87|CCA_PSEA7 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|150960543|gb|ABR82568.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa PA7] Length = 410 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 157/409 (38%), Gaps = 57/409 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ V DID + + ++ + P + + + Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSEEMLARGYRPVGADFPVFLHPQSGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F + D RRD TINA+ D+QG+VID GG Sbjct: 57 ---EYALARTERKSGRGYGGFTFHASPDVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 ADLEARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAGSGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLDQLS 247 L+ ER W EI++ L NP + +++ G E+ +V+ + +D Sbjct: 171 ALTPERSWKEISRALMEPNPEVFVQVLHDCGALAELMPEVEALFGVPQPAAHHPEIDTGV 230 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLISWQDK-------------------KSILSMAKKFSL 287 V+ Q L +R+ L+ K I ++ ++F + Sbjct: 231 HVLSVLQQCARHHQPLTVRWACLLHDLGKGLTREADWPRHIAHETRGLPLIDAINRRFRV 290 Query: 288 PREIRY--FLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL--TH 342 PR+ + L+ ++ + ++ L + +L + + + F+A + H Sbjct: 291 PRDCQELARLVGEYHTHAHRALELRPTTLLELLQSFDVYRRPQRFEEFVAASEMDARGRH 350 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + ++ + ++ +V+ G+ G ++G L + Sbjct: 351 GLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLA 398 >gi|153214504|ref|ZP_01949413.1| tRNA nucleotidyltransferase [Vibrio cholerae 1587] gi|124115306|gb|EAY34126.1| tRNA nucleotidyltransferase [Vibrio cholerae 1587] Length = 403 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 83/410 (20%), Positives = 150/410 (36%), Gaps = 67/410 (16%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ L V D D + P ++ + K P + ++ Sbjct: 2 QIYLVGGAVRDQLLQLPVYDRDWVVVGSSPQAMLAAGFQAVGKDFPVFLHP-----NSKE 56 Query: 87 KYFDITTLR-SDLITDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDL 145 ++ T R + + G + D LRRD TINA+ D G++ID GG DL Sbjct: 57 EHALARTERKTGVGYTGFACHYAPDVTLEDDLLRRDLTINAMAQDNSGQLIDPYGGQRDL 116 Query: 146 RNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLKILS 201 + ++ + A +ED LR+LR RF A ++ L+A I L+ L+ Sbjct: 117 AAKVLRHVSPA---FVEDPLRVLRVARFAAKLHHLGFTVAEETMQLMAKIAQSGELQHLT 173 Query: 202 SERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKID 261 +ER+W E +K L +P + + + + ++ D+L V + E+ + +ID Sbjct: 174 AERVWQEWHKSLSTHHPEVFLQVLRDCDALAVVLPEI-----DRLFGVPQPEK-WHPEID 227 Query: 262 S------------------LLRFIVLISWQDK-------------------KSILSMAKK 284 + L+RF + K I S+ ++ Sbjct: 228 TGIHTLMVAKQAAQLSDSLLVRFAAQVHDLGKGVTPPSEWPSHKLHCHTGLNIIESLCER 287 Query: 285 FSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG-------DKVMIAKLKIFLALHY 337 +P E R ++ + N + + G + + L A H Sbjct: 288 IRVPNEFRDLALAVCAQHSNIHRADELKPATKLKVLGLLDVWRKPERLEQVLLCCEADHR 347 Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 L + + + + + + V+ G GK++ L Sbjct: 348 GRLGLEAEPYPQREIFLRAYQAALGVAVQA--VIADGFQ-GKQIKEELDK 394 >gi|294627669|ref|ZP_06706251.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667097|ref|ZP_06732322.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598021|gb|EFF42176.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603107|gb|EFF46533.1| tRNA nucleotidyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 410 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 78/409 (19%), Positives = 145/409 (35%), Gaps = 63/409 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD+L++ D D + ++ K K P + + Sbjct: 2 KIYLVGGAVRDALLDQPAGDRDWVVVGADQAQMEAQGFKPVGKDFPVFVHP--------R 53 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D LRRDFTINA+ D+ G++ D G Sbjct: 54 SGEEYALARTERKSGRGYRGFVVDADPSVTLEEDLLRRDFTINAIARDEDTGQLFDPYNG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 DL+ R ++ +G A +ED +R+LR RF A ++ L+ + A L Sbjct: 114 ARDLQARVLRHVGPA---FIEDPVRVLRAARFMARLAPLGFTLAPETAALMRDMAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------LDQLSQV 249 L ER+W E+ + L P + +++ + I +V + ++ Sbjct: 171 DSLVPERVWQELRRALSCAQPSAFLRTLHDTDALRVILPEVDALYGVPQRAEFHPEVDTG 230 Query: 250 IEAEQVFEWKI-----DSLLRFIVLISWQDK-------------------KSILSMAKKF 285 I E V + D+L+ F L K + ++ ++ Sbjct: 231 IHQEMVSDMAARLAPGDALVGFAALTHDLGKALTPQEQWPRHVMHEQRGVAPLQALCERL 290 Query: 286 SLPREIRYFLISFFNCNFN---QKTLSIPEIKKLFYLYGDKVMIAKLK----IFLALHYN 338 +P++ R I + N L + +L ++ + A Sbjct: 291 KVPQDFRQLAIIACREHLNVHRLAELRDRTLHELLVRCDAFRRPERIAQLALVCEADKRG 350 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 L ++ + + + D+ G+ G ++G L Sbjct: 351 RLGSEEAAYPQG--EALERLHAAALAINARDLAAEGLQ-GPQIGEALTK 396 >gi|160903130|ref|YP_001568711.1| CBS domain-containing protein [Petrotoga mobilis SJ95] gi|160360774|gb|ABX32388.1| CBS domain containing protein [Petrotoga mobilis SJ95] Length = 885 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 93/425 (21%), Positives = 169/425 (39%), Gaps = 47/425 (11%) Query: 15 LINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQ---------DIDIATTILPDRVMR 61 ++N+L L+ ++ +VGG VRD L+ ++ + DID+ + Sbjct: 467 ILNLLKLIGLYGNELGLNVYVVGGFVRDLLLAINSKSNGTKSIPYDIDVVVEGDGLLFGK 526 Query: 62 IFSKTRYKVIPTSISYGTIKIICRKKY-----FDITTLRSDLITDGRYAKVVFTRDWKAD 116 +K + T I R DI T R++ + V K D Sbjct: 527 YVAKQLRAKYVEHPKFHTCSIFYRNGENKIIRIDIATARTEYYEEAGELPKVELSTIKKD 586 Query: 117 SLRRDFTINALYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFR 172 RRDF+INA+ G ++D+ DL I+ + +ED RILR R Sbjct: 587 LYRRDFSINAMAIKINSGSFGILMDFFNCKKDLEEGKIRILYP--LSFIEDPTRILRAIR 644 Query: 173 FFAHYGEKNIDSDGLVASIKAKKG--LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGI 230 F +G I+ + L +A + L+ ++ RI E+ K+LE P+ AI M I Sbjct: 645 FEQRFG-FEIEPNTLTKLEEAVENGYLEKVTGMRIREELEKILEEPQPMKAIKRMGKLKI 703 Query: 231 FKEIFLDV-QEISLDQ-LSQVIEAEQVFEWKIDSLLR--------FIVLISWQDKKSILS 280 +F +L++ L ++ + + F+ + + L VL+ + ++S+ Sbjct: 704 ILHLFEKTYYSPTLEKDLEKLFDVREYFKANLPNYLNKVRLFHIVLCVLLQYTPEESLKK 763 Query: 281 MAKKFSLPREIRYFLISFFNC--NFNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHY 337 + +++ LP++ LI N + + KL Y Y + IFLA+ Sbjct: 764 ITERYGLPKDFIKNLIQVKNVFNEISIDLNDKEKTSKLSYFYEKTNGFQNEQLIFLAVKL 823 Query: 338 NNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSF 397 + + + +K +TG D++K G G ++ L K++ +N Sbjct: 824 P------EELLAKYYEYLRKIEKLKLSITGKDLLKKGYE-GVQIKTKLEEIKKKLLNGEI 876 Query: 398 QLSQE 402 Q +E Sbjct: 877 QPGEE 881 >gi|59712851|ref|YP_205627.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Vibrio fischeri ES114] gi|73619895|sp|Q5E2K7|CCA_VIBF1 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|59480952|gb|AAW86739.1| fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase [Vibrio fischeri ES114] Length = 407 Score = 213 bits (543), Expect = 5e-53, Method: Composition-based stats. Identities = 80/407 (19%), Positives = 149/407 (36%), Gaps = 61/407 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+N+ V+D D + P ++ + +T + P ++ T + Sbjct: 2 KIYLVGGAVRDSLLNIDVKDKDWVVVGSTPQKMDSLGYQTVGQDFPVFLNPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ G++ID G Sbjct: 57 ---EYALARTERKSGQGYKGFTCYAEPDVTLEEDLLRRDLTINAIAQADNGELIDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ +RT++ + DA ED LR+LR RF A + ++ L+ + L Sbjct: 114 QDIIDRTLRHVSDA---FTEDPLRVLRVARFAARFHHLGFTVAPETMHLMKVLVDSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-SLDQ-----------L 246 L++ER+W E K L +++P + + G + ++ + + Q + Sbjct: 171 HLTAERVWQEWQKSLSSQHPEIFLSTLKECGALAIVLPELNALFGIPQPEKWHPEIDTGI 230 Query: 247 SQVIEAEQVFEWKIDSLLRFIVLISWQDK-------------------KSILSMAKKFSL 287 ++ A+Q D RF + K K I + + + Sbjct: 231 HTLMVAQQAALLSQDLPTRFAAQVHDLGKGVTPESEWPSHKLHCHTGIKLIKRLCDRVRV 290 Query: 288 PREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGD-------KVMIAKLKIFLALHYNNL 340 P + R + + N + + ++ + + L A H L Sbjct: 291 PNDYRDLALLVCEHHSNIHRAAELRAQTFIKIFDKMDVWRKPERLAPILLCCQADHAGRL 350 Query: 341 THQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVH 387 + + + + + DVV G G ++ L Sbjct: 351 GLETQPYPQKKRFEAAFDAAKNVEV--KDVVAAGFK-GPEIREELSK 394 >gi|28198511|ref|NP_778825.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xylella fastidiosa Temecula1] gi|182681188|ref|YP_001829348.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xylella fastidiosa M23] gi|73619907|sp|Q87DS9|CCA_XYLFT RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|226702094|sp|B2I9I0|CCA_XYLF2 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|28056595|gb|AAO28474.1| tRNA nucleotidyl transferase [Xylella fastidiosa Temecula1] gi|182631298|gb|ACB92074.1| Polynucleotide adenylyltransferase region [Xylella fastidiosa M23] gi|307579633|gb|ADN63602.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 416 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 86/423 (20%), Positives = 148/423 (34%), Gaps = 75/423 (17%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ D D + P + + K + P + T + Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMKSLGFKPVGRDFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGG 141 + R++ Y + D + D RRDFTINA+ DQ G +ID GG Sbjct: 57 ---EFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIARDQTNGTLIDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGL--VASIKAKKGL 197 +NDL R ++ I A ED LR+LR RF A +I + L + + A L Sbjct: 114 VNDLEQRVLRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLAMMRQMAANGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L ERIW E+++ L P + + + + + L+ L V + + Sbjct: 171 NSLIPERIWKELSRSLTYTQPAAFLHTLRTVNALEVVLPE-----LNALYGVPQHAD-YH 224 Query: 258 WKIDSLLR-------------------FIVLISWQDK-------------------KSIL 279 +ID+ L F L K Sbjct: 225 PEIDTGLHQELVSDIAAKLAPGDMLIGFAALCHDLGKALTPRATWPHHPMHEQRGMAPTQ 284 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAKLK----IF 332 ++++ +PR + + + N LS + +L ++ + Sbjct: 285 QLSERLKVPRNYQQLALIACREHLNVHRLSKLHDNTVYELLQRCDAFRRPERIAQLAIVC 344 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 A + H+D + + + D+ + + G ++G L + Sbjct: 345 EADYRGRYGHEDANYPQG--QHLCRLHAAALAINARDLNRQDL-HGTQIGEALAQARIRA 401 Query: 393 INS 395 I+S Sbjct: 402 ISS 404 >gi|121592935|ref|YP_984831.1| metal dependent phosphohydrolase [Acidovorax sp. JS42] gi|166233837|sp|A1W3D0|CCA_ACISJ RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|120605015|gb|ABM40755.1| metal dependent phosphohydrolase [Acidovorax sp. JS42] Length = 425 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 68/359 (18%), Positives = 129/359 (35%), Gaps = 48/359 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + +VGGAVRD L+ V D D + PD ++ + P + T + Sbjct: 2 QIYMVGGAVRDRLLGRPVNDHDWVVVGATPDDMVARGYLPVGRDFPVFLHPETRE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQG----KVIDY 138 + R++ + Y V + D RRD TINA+ A + D Sbjct: 57 ---EYALARTERKSGRGYRGFVVQTSPDVTLEEDLSRRDLTINAIAASAAWTGAEDLFDP 113 Query: 139 VGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKG 196 GG DL+ R ++ + D ED +RILR RF A + + + + L+ + Sbjct: 114 YGGARDLQARVLRHVTD---SFREDPVRILRVARFAARFTDFTVAPETMQLMREMVHDGE 170 Query: 197 LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVF 256 L ER+W E+ + L P + + G + +V ++L V + + + Sbjct: 171 ADHLVPERVWQELARGLMEPQPSRMFDVLRDCGALAVVLPEV-----ERLWGVPQRPE-Y 224 Query: 257 EWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-----------FNCNFNQ 305 ++D+ + ++ +L MA P +R+ ++ + Sbjct: 225 HPEVDTGVHLMM---------VLDMAAHLQAPLTVRFACLTHDLGKGTTPHDVLPRHIGH 275 Query: 306 KTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFP 364 + S +K + V +L +A + N+ ++ + P Sbjct: 276 EQRSARLLKAVCERLRVPVECRELADVVAREHGNIHRSGDLGAAALVRLLERCDAIRKP 334 >gi|330815625|ref|YP_004359330.1| putative polynucleotide adenylyltransferase [Burkholderia gladioli BSR3] gi|327368018|gb|AEA59374.1| putative polynucleotide adenylyltransferase [Burkholderia gladioli BSR3] Length = 533 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 35/247 (14%) Query: 10 FHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYK 69 + + + L + ++ IVGGAVRD L ++ +D D+AT P V R+F + R Sbjct: 78 LISRNAVRVTDTLQQAGFRAFIVGGAVRDLLFGIAPKDFDVATDATPTEVQRLFRRARL- 136 Query: 70 VIPTSISYGTIKIICRKKYFDITTLRS------------------------DLITD---- 101 + + + ++ +++T R+ D T Sbjct: 137 ---IGRRFQIVHVQFGQELIEVSTFRALVDAPAEAPPADAPPPRRMKRDELDRRTHAVDA 193 Query: 102 -GRYAKVVFTRDWKADSLRRDFTINALYADQQGK-VIDYVGGLNDLRNRTIKFIGDAHHR 159 GR + + D+ RRDFTINA+Y D + V+DY G+ D+R R ++ IGD R Sbjct: 194 SGRVLRDNVWGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADMRARLLRMIGDPATR 253 Query: 160 ILEDYLRILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPL 219 ED +R+LR RF A G +I+ + + + R++ E+ KLL + + L Sbjct: 254 YREDPVRMLRVVRFAAKLG-FDIEPHTRDPIKPLADLINNVPAARLFDEMLKLLLSGHAL 312 Query: 220 NAIVHMY 226 + + Sbjct: 313 ACLKQLR 319 >gi|15595781|ref|NP_249275.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa PAO1] gi|73619822|sp|Q9I5V3|CCA_PSEAE RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|9946455|gb|AAG03973.1|AE004494_9 tRNA nucleotidyl transferase [Pseudomonas aeruginosa PAO1] Length = 410 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 84/409 (20%), Positives = 157/409 (38%), Gaps = 57/409 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ V DID + D ++ + P + + + Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLARGYRPVGADFPVFLHPQSGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F + D RRD TINA+ D+QG+VID GG Sbjct: 57 ---EYALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 ADLEARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLDQLS 247 L+ ER W EI++ L NP I +++ G E+ +V+ + +D Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLISWQDK-------------------KSILSMAKKFSL 287 V+ Q L +R+ L+ K I ++ ++F + Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIAHEARGVPLIDAVNQRFRV 290 Query: 288 PREIRY--FLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ- 343 PRE + L+ ++ + ++ L + +L + + + F+A + + Sbjct: 291 PRECQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGRL 350 Query: 344 -DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + ++ + ++ +V+ G+ G ++G L + Sbjct: 351 GLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLA 398 >gi|197335557|ref|YP_002157039.1| multifunctional CCA protein [Vibrio fischeri MJ11] gi|226702092|sp|B5FB77|CCA_VIBFM RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|197317047|gb|ACH66494.1| multifunctional CCA protein [Vibrio fischeri MJ11] Length = 407 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 75/343 (21%), Positives = 141/343 (41%), Gaps = 27/343 (7%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRDSL+N+ V+D D + P + + +T + P + T + Sbjct: 2 KIYLVGGAVRDSLLNIDVKDKDWVVVGSTPQEMGSLGYQTVGQDFPVFLHPKTKE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKV----VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y + D LRRD TINA+ G++ID G Sbjct: 57 ---EYALARTERKSGQGYKGFTCYAEPDVTLEEDLLRRDLTINAIAQADNGELIDPYNGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 D+ +RT++ + DA ED LR+LR RF A + ++ L+ + L Sbjct: 114 QDIIDRTLRHVSDA---FTEDPLRVLRVARFAARFHHLGFTIAHETMNLMKVLVDSGELS 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEW 258 L++ER+W E K L +++P + + G + + L+ L V + E+ + Sbjct: 171 HLTAERVWQEWQKSLSSQHPEIFLSTLKECGALAIVLPE-----LNALFGVPQPEK-WHP 224 Query: 259 KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFY 318 +IDS + ++ ++ Q + +F+ ++ + + K IK + Sbjct: 225 EIDSGIHTLM-VAQQAALLSQDLPTRFAAQVHDLGKGVTPESEWPSHKLHCHTGIKLIKR 283 Query: 319 LYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKP 361 L + + L + ++ L+ + I + K Sbjct: 284 LCDRVRVPNDYRDLALLVCEHHSNIHRAAELRAQTFIKIFDKM 326 >gi|332968759|gb|EGK07809.1| poly(A) polymerase I [Psychrobacter sp. 1501(2011)] Length = 697 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 148/352 (42%), Gaps = 16/352 (4%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 +I +++ L+K + IVGG VRD+L+ L+ +D D T P V +F K R ++I Sbjct: 20 IIEVIATLSKAGFDAYIVGGGVRDTLLGLNPKDFDAVTDARPHEVKDLFGK-RCRII--G 76 Query: 75 ISYGTIKIICRKKYFDITTLRSD------LITDGRYAKVVFTRDWKADSLRRDFTINALY 128 + + + ++ T R+ +DG + D D RRDF+INA+Y Sbjct: 77 RRFQLAHVYSGRDMIEVATFRAPPSGDAHTTSDGMIVRDNVWGDIHQDFARRDFSINAMY 136 Query: 129 ADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 + +G V D+ L+D++N+T++ +G A RI ED +R+LR RF A G + Sbjct: 137 YEPLKGVVYDFCDALDDIKNKTLRLLGHAPLRIEEDPVRLLRALRFKAKLGFEFDADLSE 196 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIF---LDVQEISLD 244 L +S R++ E K+ + + ++ G + + + ++ Sbjct: 197 QFHDDNWALLDQVSPHRLYDESQKMFTGGYLVPLLPLLFEYGAIRHLIIYPPEQPSRLVN 256 Query: 245 QLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFN 304 Q++ + I+ + L+ W++ L+ KK ++P + + Sbjct: 257 QVAINTDKRIALGKSINPAFFYAALL-WENYLHQLAKFKKKNMPFHDAQLQAASKVIDRQ 315 Query: 305 QKTLSIPEIKKLF--YLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSD 354 + +IP + F ++ + +A ++ F +L + Sbjct: 316 RIKTAIPRFAEQFIRDIWILQPKLANPRVKQIAQLAEHPRFRAAFDFLLLRE 367 >gi|148264296|ref|YP_001231002.1| CBS domain-containing protein [Geobacter uraniireducens Rf4] gi|146397796|gb|ABQ26429.1| CBS domain containing protein [Geobacter uraniireducens Rf4] Length = 875 Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats. Identities = 78/421 (18%), Positives = 157/421 (37%), Gaps = 25/421 (5%) Query: 12 DSDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 ++ +L L + D+ VGG VRD L+N DID+ FS Sbjct: 456 SPTVLQVLRDLGRVGDRLDLPVYAVGGFVRDLLLNNENYDIDVTVEGDGILFAETFSAEF 515 Query: 68 YKVIPTSISYGTIKIIC-RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + +GT I+ D+ + R + V K D RRDFTIN Sbjct: 516 GCRVKSHEKFGTAVIVFPDGFKVDVASTRLEYYVSPGALPTVERSSLKMDLYRRDFTINT 575 Query: 127 LYAD----QQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 L + G +IDY G DL++R I+ + + +ED R+ R RF Sbjct: 576 LAIRLNNSEFGLLIDYFGAHRDLQDRLIRVLHN--LSFVEDPTRVFRAIRFEQRLDFHIA 633 Query: 183 -DSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI 241 ++ L+ + L+ L +R+ +E+ +L K P A+ + G+ + I ++Q Sbjct: 634 KHTENLIKNAVKMDFLEKLGGKRLLTELVYILREKEPFKAVERLSALGLLRFIHPELQMT 693 Query: 242 SLDQLSQVIEAEQVFEW---------KIDSLLRFIVLISWQDKKSILSMAKKFSLPREIR 292 + + + + +A ++ W ++ F+ L + + ++ + Sbjct: 694 ARTR-TVLEDARKIISWFDLLFLDRAYERWVVYFLTLCESLTDDMLWGACTRLAVNEHYK 752 Query: 293 YFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVM--IAKLKIFLALHYNNLTHQDTCFILQ 350 L + ++ + + ++ + L + + L+ T D Sbjct: 753 EKLFEMRRRGEEVLEIMEMKVARGGRVAKSEIYFWLKDLPVEILLYLMAKTGSDDAKKCI 812 Query: 351 VLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRK 410 L + ++G+D+ + G+P G +L + +N ++L + + Sbjct: 813 SL-YFTQLQGVRCLISGEDLKRLGVPAGPLYRELLDVVLKARLNGQVVSRDDELGMVRER 871 Query: 411 L 411 L Sbjct: 872 L 872 >gi|217077799|ref|YP_002335517.1| polyA polymerase family protein [Thermosipho africanus TCF52B] gi|217037654|gb|ACJ76176.1| polyA polymerase family protein [Thermosipho africanus TCF52B] Length = 859 Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 159/400 (39%), Gaps = 24/400 (6%) Query: 13 SDLINILSLLNKGEDK----SCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRY 68 S ++N+L L+ + +VGG VRD L+ L DIDI + SK Sbjct: 450 SRILNLLRLIGSYGEDKKMPVYVVGGFVRDLLLGLENYDIDIVVEGNGLEFAKYASKQLG 509 Query: 69 KVIPTSISYGTIKIICRKKY-FDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINAL 127 + + T + + + DI T R++ V K D RRDFTINA+ Sbjct: 510 AKMVEHEKFLTASLFFKDGFRIDIATARTEYYEKPADLPQVDISTIKKDLYRRDFTINAM 569 Query: 128 YA----DQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID 183 + G + D+ DL+ I+ + +ED RI+R RF +G K + Sbjct: 570 AIKLNTKEFGLLYDFFDSRKDLKEGLIRVLH--KLSFVEDPTRIIRAVRFEQRFGFKIEE 627 Query: 184 SDGLVASIKAKKG-LKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL-----D 237 + + G L+ +S +RI E+ K+LE + PLNAI + I K IF Sbjct: 628 ETLRILNETLNGGFLEKVSGQRIRQELEKILEEREPLNAIKRLAQLKILKHIFPKTYFTS 687 Query: 238 VQEISLDQLSQVIEAEQVFEWKIDSLLRFI-VLISWQDKKSILSMAKKFSLPREIRYFLI 296 V E L+ L + + KI+ + +L+ + D ++ + KK+ +P++ F+ Sbjct: 688 VMEKKLENLFNNLRIIKELYKKINVFYSLLRILLEYYDIDTLKKVIKKYGIPKK---FID 744 Query: 297 SFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDII 356 L K+ + KV+ A + + +D+ + + Sbjct: 745 EIKATETRLPPLLNMIKYKIRFSDIYKVIGKPSAETTAHIMSYIDDEDSKEY--FVEYLK 802 Query: 357 HWKKPLFPLTGDDVV-KYGIPPGKKVGNILVHCKQEWINS 395 ++G+ + K + ++G ++ +++ Sbjct: 803 RVFSTKLSISGNYLKEKMNVKNSVEIGKVMNELYCRKLDN 842 >gi|28317079|gb|AAO39558.1| LP10544p [Drosophila melanogaster] Length = 307 Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats. Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 22/311 (7%) Query: 108 VFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRI 167 ++T DW+ D+ RRD TIN+++ G V DY G +DL+ R + F+G+A RI ED+LRI Sbjct: 1 MYTTDWQLDANRRDLTINSMFLGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRI 60 Query: 168 LRFFRFFAHYG--EKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHM 225 LR+FRF+ E N D L A + KGL +S ERIWSE+ K++ + M Sbjct: 61 LRYFRFYGRIASEENNHDKATLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEM 120 Query: 226 YNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKF 285 + +F+ I L +E LD+ ++ +A FE +L ++ + + M K+ Sbjct: 121 HRCNLFEYIGLP-KEPYLDEFDRLCKALDQFEKPHQPILYLAGMLH--SVEDAMEMHKRL 177 Query: 286 SLP---REIRYFLISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTH 342 L R++ F+ +Q T K Y + + +L L Y+ Sbjct: 178 KLSAYERDLARFITQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQL-----LKYSG--- 229 Query: 343 QDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQE 402 L++ + + W KP FP+ G+ + + G+ G ++G ++ K W +S FQL+ + Sbjct: 230 -----KLELYNQLKSWVKPDFPIRGNALAQRGLN-GMRLGLVMDELKLLWADSDFQLTHD 283 Query: 403 DLHHLLRKLIA 413 DL + ++ Sbjct: 284 DLLKWIPNVLK 294 >gi|261278702|pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I gi|261278703|pdb|3H37|B Chain B, The Structure Of Cca-Adding Enzyme Apo Form I Length = 441 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 92/421 (21%), Positives = 163/421 (38%), Gaps = 23/421 (5%) Query: 12 DSDLINILSLLNKGEDKS----CIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTR 67 D ++N+ LL K D+ +VGG VRD L+ + DIDI + Sbjct: 16 DPKILNLFRLLGKFGDEVNXPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFL 75 Query: 68 YKVIPTSISYGTIKIICRKK-YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINA 126 + + T + + DI T R + V K D RRDFTINA Sbjct: 76 PGKLVKHDKFXTASLFLKGGLRIDIATARLEYYESPAKLPDVEXSTIKKDLYRRDFTINA 135 Query: 127 LYADQQ----GKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI 182 G +ID+ GG DL+ I+ + ++D RILR RF + + Sbjct: 136 XAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLH--TLSFVDDPTRILRAIRFEQRFDFRIE 193 Query: 183 D-SDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFL----- 236 + ++ L+ + L+ + R+ E+ K+LE KNPL +I + K +F Sbjct: 194 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRXAQFDVIKHLFPKTYYT 253 Query: 237 DVQEISLDQLSQVIEAEQVFEWKIDSLLR-FIVLISWQDKKSILSMAKKFSLPREIRYFL 295 + + L + I + ++D V + + D +S + ++SL R + Sbjct: 254 PSXDEKXENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINE- 312 Query: 296 ISFFNCNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDI 355 I + + E ++Y ++ I L Y L+ + L I Sbjct: 313 IRHVEKSAPALLEXLSERVPASFVYPLVKGVSNETICHFLAY--LSGEKEGLFKSYLLKI 370 Query: 356 IHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASS 415 + K + G+ +++ GI GK +G +L + ++ + +E L +L L Sbjct: 371 KNTKLEK--INGEYLIRKGITSGKIIGEVLEKILXKKLDGDTRDEEEILEEVLASLETEG 428 Query: 416 Q 416 + Sbjct: 429 K 429 >gi|107099570|ref|ZP_01363488.1| hypothetical protein PaerPA_01000583 [Pseudomonas aeruginosa PACS2] gi|254243678|ref|ZP_04937000.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 2192] gi|296387090|ref|ZP_06876589.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa PAb1] gi|126197056|gb|EAZ61119.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 2192] Length = 410 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 83/409 (20%), Positives = 157/409 (38%), Gaps = 57/409 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ V DID + D ++ + P + + + Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLARGYRPVGADFPVFLHPQSGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F + D RRD TINA+ D+QG+VID GG Sbjct: 57 ---EYALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 ADLEARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLDQLS 247 L+ ER W EI++ L NP I +++ G E+ +V+ + +D Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLISWQDK-------------------KSILSMAKKFSL 287 V+ Q L +R+ L+ K I ++ ++F + Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIAHEARGVPLIDAVNQRFRV 290 Query: 288 PREIRY--FLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ- 343 PR+ + L+ ++ + ++ L + +L + + + F+A + + Sbjct: 291 PRDCQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGRL 350 Query: 344 -DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + ++ + ++ +V+ G+ G ++G L + Sbjct: 351 GLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLA 398 >gi|71899852|ref|ZP_00682001.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1] gi|71730369|gb|EAO32451.1| Polynucleotide adenylyltransferase [Xylella fastidiosa Ann-1] Length = 416 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 86/423 (20%), Positives = 148/423 (34%), Gaps = 75/423 (17%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 KS +VGGAVRD+L+ D D + P + + K + P + T + Sbjct: 2 KSYLVGGAVRDALLGQPAGDCDWVVVGADPAHMKSLGFKPVGRDFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQ-QGKVIDYVGG 141 + R++ Y + D + D RRDFTINA+ DQ G +ID GG Sbjct: 57 ---EFALARTERKNGHGYRGFIVNADPTVTLEQDLQRRDFTINAIARDQTNGTLIDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGL--VASIKAKKGL 197 +NDL R ++ I A ED LR+LR RF A +I + L + + A L Sbjct: 114 VNDLEQRVLRHISPA---FAEDPLRVLRAARFMARLAPLGFSIAPETLAMMRQMAANGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFE 257 L ERIW E+++ L P + + + + + L+ L V + + Sbjct: 171 NSLIPERIWKELSRSLAYTQPAAFLHTLRTVNALEVVLPE-----LNALYGVPQHAD-YH 224 Query: 258 WKIDSLLR-------------------FIVLISWQDK-------------------KSIL 279 +ID+ L F L K Sbjct: 225 PEIDTGLHQELVSDIAAKLAPGDMLIGFAALCHDLGKALTPRATWPHHPMHEQRGMAPTQ 284 Query: 280 SMAKKFSLPREIRYFLISFFNCNFNQKTLS---IPEIKKLFYLYGDKVMIAKLK----IF 332 ++++ +PR + + + N LS + +L ++ + Sbjct: 285 QLSERLKVPRNYQQLALIACREHLNVHRLSKLHDNTVYELLQRCDAFRRPERIAQLAIVC 344 Query: 333 LALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQEW 392 A + H+D + + + D+ + + G ++G L + Sbjct: 345 EADYRGRYGHEDANYPQG--QHLCRLHAAALAINARDLNRQDL-HGTQIGEALAQARIRA 401 Query: 393 INS 395 I+S Sbjct: 402 ISS 404 >gi|194367187|ref|YP_002029797.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Stenotrophomonas maltophilia R551-3] gi|226702087|sp|B4SIY9|CCA_STRM5 RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|194349991|gb|ACF53114.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Stenotrophomonas maltophilia R551-3] Length = 406 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 80/411 (19%), Positives = 149/411 (36%), Gaps = 63/411 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ D D + P ++ + P + T + Sbjct: 2 KIYLVGGAVRDRLLQRPAGDRDWVVVGATPAQMEAQGYSAVGRDFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D RRDFTINA+ D+ G ++D GG Sbjct: 57 ---EYALARTERKSGRGYRGFVVDADPAVTLEEDLQRRDFTINAIACDEDTGTLVDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + D+ R ++ +G A +ED LR+LR RF AH+ + ++ L+ ++ A L Sbjct: 114 VRDIEQRVLRHVGPA---FVEDPLRVLRAARFMAHFAPLDFTVAPETMDLMRNVAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------LDQLSQV 249 L ER+W E+ K L + P + +++ I +++ + ++ Sbjct: 171 DALVPERVWQELRKALVSAQPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTG 230 Query: 250 IEAEQVFEWKI-----DSLLRFIVLISWQDK-------------------KSILSMAKKF 285 I E V + D L+ F L K K + + + Sbjct: 231 IHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIKPLKELCARL 290 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG------DKVMIAKLKI-FLALHYN 338 +P E + + + N + + L G +A++ + A Sbjct: 291 RVPTEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRG 350 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 L +D+ + + + + D+ + G +G L + Sbjct: 351 RLGFEDSDYPQG--ETLKRLHQAALSVQARDLDTTHLK-GPAIGEALAKAR 398 >gi|260222271|emb|CBA31668.1| Multifunctional CCA protein [Curvibacter putative symbiont of Hydra magnipapillata] Length = 477 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 71/340 (20%), Positives = 131/340 (38%), Gaps = 54/340 (15%) Query: 29 SCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK 87 + +VGGAVRD+L+ L V+D D + P +++ K P + T + Sbjct: 58 TFLVGGAVRDALLGLEVKDRDWVVVGSSPQQMLDAGYLAVGKDFPVFLHPRTQE------ 111 Query: 88 YFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQG---------- 133 + R++ T Y + D RRD TIN++ A Sbjct: 112 --EYALARTERKTAPGYKGFAVHAAPDVTLEEDLARRDLTINSIAARADYTGANGTFDTK 169 Query: 134 KVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASI 191 +ID G DL+ R ++ + A ED +RILR RF A + + + + L+ ++ Sbjct: 170 NLIDPFSGQADLQMRVLRHVTPA---FREDPVRILRVARFAARFTDFTVAPETTALMQTM 226 Query: 192 KAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIE 251 + L ER+W EI K L P + + G K + + LD+L V + Sbjct: 227 VEDGEVDHLVPERVWQEIAKGLMEARPSRMFEVLRSCGAMKRLLPE-----LDRLWGVPQ 281 Query: 252 AEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISF-----------FN 300 + + + ++D+ + F++ +L A + P +R+ + Sbjct: 282 SPE-YHPEVDTGVHFML---------VLDRAAQLDAPLAVRFACLGHDLGKGTTPADVLP 331 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNL 340 + + S +K + A+L +A + N+ Sbjct: 332 RHIGHEERSARLLKGVCRRLRVPNDCAELADVVAREHGNI 371 >gi|237747276|ref|ZP_04577756.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter formigenes HOxBLS] gi|229378627|gb|EEO28718.1| tRNA nucleotidyltransferase polyA polymerase [Oxalobacter formigenes HOxBLS] Length = 427 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 72/320 (22%), Positives = 135/320 (42%), Gaps = 37/320 (11%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K VGGAVRD++M V D D + + ++ + K K P + T + Sbjct: 2 KIYTVGGAVRDTVMGRPVHDRDYVVVGSAVEEMLSLGFKPVGKDFPVFLHPETKQ----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ Y VF K D LRRD TINA+ ++G++ID GG Sbjct: 57 ---EYALARTERKVAPGYKGFVFHASPEVTLKEDLLRRDLTINAMAMSEEGELIDPFGGK 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 D+ + + + +A ED +RILR RF A + + + + L+ + A + L Sbjct: 114 RDIEAKIFRHVSEA---FSEDPVRILRLARFAARFTDFTVAPETMALMKKMVASGEVDAL 170 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQVFEWKI 260 ER+W E+++ L + P I M+ G +F +++ L V + E+ + +I Sbjct: 171 VPERVWKELSQGLMEEKPSRMIAIMHECGALARLFPEIEA-----LWDVPQPEK-YHPEI 224 Query: 261 DSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLY 320 + ++ + + KK + P +R+ ++ + K + P + + Sbjct: 225 YTGKHTLLALDYSAKK---------NYPLTVRFSVL----LHDLGKGTTPPNLWPHHRAH 271 Query: 321 GDKVMIAKLKIFLALHYNNL 340 ++ + LH +N+ Sbjct: 272 EERGAALVDNVCRRLHVSNM 291 >gi|116054312|ref|YP_788757.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Pseudomonas aeruginosa UCBPP-PA14] gi|254237200|ref|ZP_04930523.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa C3719] gi|122261545|sp|Q02TH9|CCA_PSEAB RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|115589533|gb|ABJ15548.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169131|gb|EAZ54642.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa C3719] Length = 410 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 83/409 (20%), Positives = 157/409 (38%), Gaps = 57/409 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ V DID + D ++ + P + + + Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLARGYRPVGADFPVFLHPQSGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F + D RRD TINA+ D+QG+VID GG Sbjct: 57 ---EYALARTERKSGRGYGGFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 ADLEARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRIAAETLALMRQLAESGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLDQLS 247 L+ ER W EI++ L NP I +++ G E+ +V+ + +D Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLISWQDK-------------------KSILSMAKKFSL 287 V+ Q L +R+ L+ K I ++ ++F + Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIAHEARGVPLIDAVNQRFRV 290 Query: 288 PREIRY--FLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ- 343 PR+ + L+ ++ + ++ L + +L + + + F+A + + Sbjct: 291 PRDCQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGRL 350 Query: 344 -DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + ++ + ++ +V+ G+ G ++G L + Sbjct: 351 GLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLA 398 >gi|190575848|ref|YP_001973693.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Stenotrophomonas maltophilia K279a] gi|226702088|sp|B2FUP5|CCA_STRMK RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|190013770|emb|CAQ47405.1| putative 2 tRNA nucleotidyltransferase [Stenotrophomonas maltophilia K279a] Length = 406 Score = 212 bits (541), Expect = 8e-53, Method: Composition-based stats. Identities = 80/411 (19%), Positives = 148/411 (36%), Gaps = 63/411 (15%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K +VGGAVRD L+ D D + P ++ + P + T + Sbjct: 2 KIYLVGGAVRDRLLQRPAGDHDWVVVGATPAQMEAQGYTAVGRDFPVFLHPKTGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQ-GKVIDYVGG 141 + R++ + Y V D + D RRDFTINA+ D++ G ++D GG Sbjct: 57 ---EYALARTERKSGRGYRGFVVDADPGVTLEEDLQRRDFTINAIACDEETGTLVDPYGG 113 Query: 142 LNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGL 197 + D+ R ++ +G A +ED LR+LR RF A + ++ L+ I A L Sbjct: 114 VRDIEQRVLRHVGPA---FVEDPLRVLRAARFMARFAPLGFTVAEETMALMREIAASGEL 170 Query: 198 KILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEIS--------LDQLSQV 249 L ER+W E+ K L ++ P + +++ I +++ + ++ Sbjct: 171 DALVPERVWQELRKALVSERPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTG 230 Query: 250 IEAEQVFEWKI-----DSLLRFIVLISWQDK-------------------KSILSMAKKF 285 I E V + D L+ F L K K + ++ + Sbjct: 231 IHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIKPLKALCARL 290 Query: 286 SLPREIRYFLISFFNCNFNQKTLSIPEIKKLFYLYG------DKVMIAKLKI-FLALHYN 338 +P E + + + N + + L G +A++ + A Sbjct: 291 KIPAEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRG 350 Query: 339 NLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCK 389 L +D + + + + D+ + G +G L + Sbjct: 351 RLGFEDADYPQG--ETLKRLHQAALSVQARDLDTTHLK-GPAIGEALAKAR 398 >gi|313111771|ref|ZP_07797564.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 39016] gi|310884066|gb|EFQ42660.1| tRNA nucleotidyl transferase [Pseudomonas aeruginosa 39016] Length = 410 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 83/409 (20%), Positives = 157/409 (38%), Gaps = 57/409 (13%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 + VGGAVRD L+ V DID + D ++ + P + + + Sbjct: 2 QIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLARGYRPVGADFPVFLHPQSGE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTRD----WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ + Y F + D RRD TINA+ D+QG+VID GG Sbjct: 57 ---EYALARTERKSGRGYGGFTFHASPDVTLQEDLTRRDLTINAMAEDEQGRVIDPYGGQ 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNI----DSDGLVASIKAKKGLK 198 DL R ++ + A ED LR+LR RF A Y ++ L+ + L+ Sbjct: 114 ADLEARLLRHVSPA---FAEDPLRVLRVARFAARYAGLGFRVAAETLALMRQLAESGELQ 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEI-----------SLDQLS 247 L+ ER W EI++ L NP I +++ G E+ +V+ + +D Sbjct: 171 ALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGVPQPAAHHPEIDTGV 230 Query: 248 QVIEAEQVFEWKIDSL-LRFIVLISWQDK-------------------KSILSMAKKFSL 287 V+ Q L +R+ L+ K I ++ ++F + Sbjct: 231 HVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIAHEARGVPLIDAVNQRFRV 290 Query: 288 PREIRY--FLISFFNCNFNQK-TLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQ- 343 PR+ + L+ ++ + ++ L + +L + + + F+A + + Sbjct: 291 PRDCQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGRL 350 Query: 344 -DTCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHCKQE 391 + ++ + ++ +V+ G+ G ++G L + Sbjct: 351 GLEQRDYPQAAYLLGAAQAARAVSVKPLVEKGLK-GAELGEALKRARLA 398 >gi|33519542|ref|NP_878374.1| tRNA CCA-pyrophosphorylase [Candidatus Blochmannia floridanus] gi|73619763|sp|Q7U350|CCA_BLOFL RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT gi|33517205|emb|CAD83587.1| tRNA nucleotidyltransferase [Candidatus Blochmannia floridanus] Length = 411 Score = 212 bits (540), Expect = 9e-53, Method: Composition-based stats. Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 18/217 (8%) Query: 30 CIVGGAVRDSLMNLSVQDIDIA-TTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKKY 88 +VGGAVRDSL+NL + + D T ++ I + K P + K + Sbjct: 4 YLVGGAVRDSLLNLPITEKDWVITGSSAQEMLSIGYEQVGKDFPVFLHP--------KSH 55 Query: 89 FDITTLRSDLI----TDGRYAKVVFTRDWKADSLRRDFTINALYADQQGKVIDYVGGLND 144 + R++ G + + D RRD TINA+ D G ++D G D Sbjct: 56 EEYALARTERKLGSGYTGFICHTEPSITIEEDLYRRDLTINAMAYDMNGNLLDPYNGQKD 115 Query: 145 LRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGLVASIKAKKGLKILSS 202 ++ R ++ + +A ED LR+LR RF A I + LK LS Sbjct: 116 IQLRLLRHVSNA---FYEDPLRVLRVARFAAKLKNIGFTIAIETFEIMTHMIHELKSLSP 172 Query: 203 ERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQ 239 ER+W E K L NP + G K +F ++ Sbjct: 173 ERVWMETKKALITDNPQVYFQVLKKCGALKILFPELD 209 >gi|159899134|ref|YP_001545381.1| polynucleotide adenylyltransferase region [Herpetosiphon aurantiacus ATCC 23779] gi|159892173|gb|ABX05253.1| Polynucleotide adenylyltransferase region [Herpetosiphon aurantiacus ATCC 23779] Length = 404 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 158/392 (40%), Gaps = 29/392 (7%) Query: 15 LINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTS 74 L ++ + +VGG VRD L+ V DIDI + I++ + Sbjct: 20 LQWLIQTADTQGLACYLVGGCVRDWLLERPVGDIDIVVEGDAIMLAEIWATVWPDQLHIH 79 Query: 75 ISYGTIKIICRKK----YFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY-- 128 +GT + + D+ + RS+ VV + AD RRDFTIN L Sbjct: 80 PPFGTATLSWQDAAGVCSLDLISARSEYYPQPAALPVVSFANLAADLARRDFTINCLALR 139 Query: 129 -ADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDGL 187 A+Q +ID G DL+ I+ + D ++D RILR RF A ++ Sbjct: 140 LANQPTLLIDPQHGYADLQQSLIRVLHD--QSFIDDPTRILRAIRFAARLN-FELEPQTA 196 Query: 188 VASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLS 247 +A L + R+W+E+ LL + L A+ + G+ ++F SL+Q + Sbjct: 197 TLLQQALPWLDQTTPARLWNELGLLLTEPSALAALSLADSWGVLGQLFGSGWSSSLNQQA 256 Query: 248 QVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN-----CN 302 +++ A Q + +++L+S + + ++FSL + IR + + Sbjct: 257 EMVLASQ---PDQQLAIVWLLLMSQLSPSAAQTQTQRFSLAKPIRLMVEQWPELAALVAT 313 Query: 303 FNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPL 362 N+ TL+ ++ +L + L A + + + LQ L I Sbjct: 314 LNRTTLAAGQLDRLLSPFAP-----LLLEVWASNQATSIQRRIKYYLQYLRPIAS----- 363 Query: 363 FPLTGDDVVKYGIPPGKKVGNILVHCKQEWIN 394 LTG D+ GI G + +L ++ ++ Sbjct: 364 -ALTGRDLQAQGIAAGPQYKTLLAEAREGQLD 394 >gi|294102166|ref|YP_003554024.1| CBS domain containing protein [Aminobacterium colombiense DSM 12261] gi|293617146|gb|ADE57300.1| CBS domain containing protein [Aminobacterium colombiense DSM 12261] Length = 877 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 91/404 (22%), Positives = 163/404 (40%), Gaps = 36/404 (8%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC- 84 K+ IVGG VRD ++ D+D+ ++ I Y T +I Sbjct: 474 GMKAYIVGGIVRDIMLGRESLDLDVVVEGNAVDFLKSI-NQEGCHISLHERYKTGSLIFS 532 Query: 85 RKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRRDFTINALY----ADQQGKVIDYVG 140 D+ T R + V + K D RRDFTINA+ D G +IDY G Sbjct: 533 DGMKVDVATARREFYEYPLAQPRVSSDSLKHDLYRRDFTINAMAVSITPDSWGTLIDYFG 592 Query: 141 GLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNID-SDGLVASIKAKKGLKI 199 G DL +T+K + + +ED R++R R D + L+ S L Sbjct: 593 GRRDLNKKTLKVLHN--LSFVEDPTRVIRGIRLEQRLNFHLEDNTLRLLHSCLKGGLLAR 650 Query: 200 LSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE-----ISLDQLSQVIEA-- 252 LS R+ SE+ ++ K P A+ M G++ +F ++ ++ +LS + Sbjct: 651 LSGYRLRSELELTMQEKAPFPALKRMAELGVWDILFPGLRIGKTAVRTIRRLSAFLARIS 710 Query: 253 EQVFEWKIDSLLRFIVLISWQDKKSIL-SMAKKFSL-PREIRYFLISFFNCNFNQKTLSI 310 +++ L F+ ++ + +++ ++ + SL PRE + S ++ L Sbjct: 711 RDFPDFRGYEWLAFLAALAIESHETVQFAILDRLSLAPRERDIMVQSLDGLRAAEQDLGG 770 Query: 311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDV 370 + K +YG + ++ AL ++ T + ++LS + + LTG D+ Sbjct: 771 RTLVKNSEIYG---YLREISPVTALFWSAATER-WRVRRRILSYLTRLYRTKSHLTGRDL 826 Query: 371 VKYGIPPGKKVGNILVHCKQ--------------EWINSSFQLS 400 ++ G G ++G IL + WI ++F L Sbjct: 827 IEMGYRGGPQIGEILSQLRDRCLNEELTTLEEEVAWIKNNFPLE 870 >gi|53802666|ref|YP_112563.1| tRNA nucleotidyltransferase [Methylococcus capsulatus str. Bath] gi|73619800|sp|Q60CQ4|CCA_METCA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gi|53756427|gb|AAU90718.1| tRNA nucleotidyltransferase [Methylococcus capsulatus str. Bath] Length = 425 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 76/407 (18%), Positives = 132/407 (32%), Gaps = 58/407 (14%) Query: 28 KSCIVGGAVRDSLMNLSVQDIDIATTI-LPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 K+ +VGGAVRD L+ L V++ D P+ ++ + + P + T + Sbjct: 2 KAFLVGGAVRDRLLGLPVRERDWVVVGESPETMIARGFRPVGRDFPVFLHPETHE----- 56 Query: 87 KYFDITTLRSDLITDGRYAKVVFTR----DWKADSLRRDFTINALYADQQGKVIDYVGGL 142 + R++ T Y V + D RRD TINA+ G+++D GG Sbjct: 57 ---EYALARTERKTAPGYRGFVVHAAPDVTLEQDLERRDLTINAMAETPDGRLVDPFGGR 113 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGE--KNIDSDGL--VASIKAKKGLK 198 DL R ++ + A ED +RILR RF A + + L + + + Sbjct: 114 RDLEARLLRHVSSA---FAEDPVRILRVARFTARLTPLGFRVAPETLVEMRRMVEAGEVD 170 Query: 199 ILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAE----- 253 L ER+W+E K L P + + G K +F +++ + E Sbjct: 171 ALVPERVWAEFAKALAEPAPSAFFRTLRDCGALKRLFPEIERLFGVPQPPRHHPEIDTGV 230 Query: 254 -------QVFEWKIDSLLRFIVLISWQDKK-------------------SILSMAKKFSL 287 Q D RF L K ++ ++ +F Sbjct: 231 HTLMVLDQAARLTADPSARFAALTHDLGKALTPPELWPSHRGHERLGLGALNTLCDRFRA 290 Query: 288 PREIRYFLISFFNCN---FNQKTLSIPEIKKLFYLYGD-KVMIAKLKIFLALHYNNLTHQ 343 P R + L + L G K L+ FL + + Sbjct: 291 PNAFRRLAEKVMRYHGLCHRAAELRTSTLVDLLDRLGALKRHDDTLEPFLLACEADARGR 350 Query: 344 D--TCFILQVLSDIIHWKKPLFPLTGDDVVKYGIPPGKKVGNILVHC 388 + ++ + +++ + G G L Sbjct: 351 AGFEERPYPQADWLREAQRAAVSVDSRPLIEQRLQ-GPAFGRALRQL 396 >gi|319945217|ref|ZP_08019479.1| multifunctional CCA protein [Lautropia mirabilis ATCC 51599] gi|319741787|gb|EFV94212.1| multifunctional CCA protein [Lautropia mirabilis ATCC 51599] Length = 469 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 73/356 (20%), Positives = 145/356 (40%), Gaps = 38/356 (10%) Query: 28 KSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRK 86 ++ VGG+VRD L+ L D D + PD+++ + K P + Sbjct: 12 QTYRVGGSVRDELLGLPAGDRDWVVVGATPDQMLAQGFQAVGKDFPVFLHPQ-------- 63 Query: 87 KYFDITTLRSDLITDGRYAK--VVFTRD--WKADSLRRDFTINALYADQQGKVIDYVGGL 142 + + R++ T Y V F+ D + D LRRD TINA+ G ++D G Sbjct: 64 SHEEYALARTERKTAPGYKGFAVHFSPDVTLEDDLLRRDLTINAIARAADGSLVDPFHGQ 123 Query: 143 NDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEKNIDSDG--LVASIKAKKGLKIL 200 D++ R + + A ED +RILR RF A + + I + L+ + A + L Sbjct: 124 ADIQARIFRHVSPA---FREDPVRILRLARFAARFPDFTIAPETLALMREMTAAGEVHAL 180 Query: 201 SSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISL--DQLSQVIEAEQVFEW 258 +ER+W E+++ L ++ P + + + + + E D L+ + + + Sbjct: 181 VAERVWQELSRGLMSQRPSRMLQVLDQAHALRILLPQLPEPDTQPDWLTALDASAAAHDP 240 Query: 259 KIDSLLRFIVLISWQ--DKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIKKL 316 +RF +L++ +S + + + ++P+ + N + + S+ E K Sbjct: 241 LP---VRFAILLAGMTIPAESRIELGPQENIPQPASPTVSG--NVDKTKAAKSVTEQAKA 295 Query: 317 FYLYGDKVMIAKLKIFLALHYN----------NLTHQDTCFILQVLSDIIHWKKPL 362 ++ A ++ +H + QD +L + + W++P Sbjct: 296 L-RASNECTDAAARLASEIHGPIPQAARQWFLSSERQDAEALLALFNRHDAWRRPE 350 >gi|288940943|ref|YP_003443183.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] gi|288896315|gb|ADC62151.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] Length = 422 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 72/347 (20%), Positives = 139/347 (40%), Gaps = 44/347 (12%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDID-IATTILPDRVMRIFSKTRYKVIPTSISYGTIKIIC 84 ++ +VGGAVRD L+ + + D + + ++ + K P + Sbjct: 14 GLETYLVGGAVRDLLLGRTTHEHDYVVVGASVEEMLARGFRQVGKDFPVFLHP------- 66