BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] (416 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/416 (100%), Positives = 416/416 (100%) Query: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM Sbjct: 1 MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60 Query: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR Sbjct: 61 RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120 Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK Sbjct: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180 Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE Sbjct: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240 Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN Sbjct: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300 Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK Sbjct: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360 Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ Sbjct: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416 >gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 11/91 (12%) Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISL---DQLSQVIEAEQVFEWKIDSLLRFIVLI--S 271 +PL V Y+ I E L + E+S+ +Q+++A + E K+D +R L+ Sbjct: 96 HPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAK-LEVKVDDQVRLPELVCDG 154 Query: 272 WQDKKSILSMAKKFS-----LPREIRYFLIS 297 I S A FS LP E R+ L++ Sbjct: 155 LVVSTPIGSTAYNFSALGPILPLESRHLLLT 185 >gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 45 VQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK--IICRKKYFD 90 V I +A T+L + + + KT Y+++ SIS G + II + YF+ Sbjct: 423 VNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFN 470 >gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus str. psy62] Length = 499 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 263 LLRFIVLISWQDK-KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311 +L IV++ W+ K SI+ + P I+Y++ F C+F K P Sbjct: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227 >gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 426 Score = 24.6 bits (52), Expect = 3.1, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Query: 111 RDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIG-DAHHR 159 + WK ++R +N + GK I Y+ GL D+ + T K++ D + R Sbjct: 23 KHWKVVPIKRFTKLNTGRTSESGKDIIYI-GLEDVESGTGKYLPKDGNSR 71 >gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] Length = 692 Score = 24.3 bits (51), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 21/71 (29%) Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367 +S+PE +YG V I++L++ +VL + +KP FP G Sbjct: 407 ISLPEKGYTIRVYGTTVAISELRVG-----------------EVLVILGSGQKPTFP--G 447 Query: 368 DDV--VKYGIP 376 D+V +G+P Sbjct: 448 DEVKEPAFGMP 458 >gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] Length = 209 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 ED C ++ ++LS+ I + DR+MRI K Sbjct: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 >gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 25/120 (20%) Query: 196 GLKILSSERIW-SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 G +L+ RI+ S + K+L + A+ H+ GG+ + I + I A Sbjct: 224 GETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI------------PRAIPAHL 271 Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 ++S + +ISW KK+ + A+ ++ FNC + P+ K Sbjct: 272 TASINLNS-VEVPQIISWLSKKAHVKPAE-----------VLRTFNCGIGMVIIVHPDNK 319 >gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 463 Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust. Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDG 102 + + I Y +I +K + + TTL+ + I G Sbjct: 411 ALTSKIGYDNASMIAKKAHHNSTTLKEEAIASG 443 >gi|254780457|ref|YP_003064870.1| cytidylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 217 Score = 23.5 bits (49), Expect = 7.0, Method: Compositional matrix adjust. Identities = 10/17 (58%), Positives = 13/17 (76%) Query: 132 QGKVIDYVGGLNDLRNR 148 +G+ +DYV L DLRNR Sbjct: 155 RGEKVDYVKILEDLRNR 171 >gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQD 344 F ++G +AK K+F AL YNN T+++ Sbjct: 13 FIIFGGTGDLAKRKLFPAL-YNNYTNRE 39 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.141 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 271,822 Number of Sequences: 1233 Number of extensions: 11319 Number of successful extensions: 51 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 15 length of query: 416 length of database: 328,796 effective HSP length: 76 effective length of query: 340 effective length of database: 235,088 effective search space: 79929920 effective search space used: 79929920 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 39 (19.6 bits)