BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (416 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/416 (100%), Positives = 416/416 (100%)

Query: 1   MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60
           MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM
Sbjct: 1   MVSIVQHKWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVM 60

Query: 61  RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120
           RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR
Sbjct: 61  RIFSKTRYKVIPTSISYGTIKIICRKKYFDITTLRSDLITDGRYAKVVFTRDWKADSLRR 120

Query: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180
           DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK
Sbjct: 121 DFTINALYADQQGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYLRILRFFRFFAHYGEK 180

Query: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240
           NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE
Sbjct: 181 NIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQE 240

Query: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300
           ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN
Sbjct: 241 ISLDQLSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFN 300

Query: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360
           CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK
Sbjct: 301 CNFNQKTLSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKK 360

Query: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416
           PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ
Sbjct: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLRKLIASSQ 416


>gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 264

 Score = 26.2 bits (56), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 217 NPLNAIVHMYNGGIFKEIFLDVQEISL---DQLSQVIEAEQVFEWKIDSLLRFIVLI--S 271
           +PL   V  Y+  I  E  L + E+S+      +Q+++A +  E K+D  +R   L+   
Sbjct: 96  HPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAK-LEVKVDDQVRLPELVCDG 154

Query: 272 WQDKKSILSMAKKFS-----LPREIRYFLIS 297
                 I S A  FS     LP E R+ L++
Sbjct: 155 LVVSTPIGSTAYNFSALGPILPLESRHLLLT 185


>gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 25.0 bits (53), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 45  VQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK--IICRKKYFD 90
           V  I +A T+L  + + +  KT Y+++  SIS G +   II  + YF+
Sbjct: 423 VNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFN 470


>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 499

 Score = 25.0 bits (53), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 263 LLRFIVLISWQDK-KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
           +L  IV++ W+ K  SI+ +      P  I+Y++   F C+F  K    P
Sbjct: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227


>gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 426

 Score = 24.6 bits (52), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 111 RDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIG-DAHHR 159
           + WK   ++R   +N     + GK I Y+ GL D+ + T K++  D + R
Sbjct: 23  KHWKVVPIKRFTKLNTGRTSESGKDIIYI-GLEDVESGTGKYLPKDGNSR 71


>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 692

 Score = 24.3 bits (51), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 21/71 (29%)

Query: 308 LSIPEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTG 367
           +S+PE      +YG  V I++L++                  +VL  +   +KP FP  G
Sbjct: 407 ISLPEKGYTIRVYGTTVAISELRVG-----------------EVLVILGSGQKPTFP--G 447

Query: 368 DDV--VKYGIP 376
           D+V    +G+P
Sbjct: 448 DEVKEPAFGMP 458


>gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
          Length = 209

 Score = 24.3 bits (51), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 26  EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65
           ED  C     ++   ++LS+    I   +  DR+MRI  K
Sbjct: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166


>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 24.3 bits (51), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 25/120 (20%)

Query: 196 GLKILSSERIW-SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
           G  +L+  RI+ S + K+L     + A+ H+  GG+ + I             + I A  
Sbjct: 224 GETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI------------PRAIPAHL 271

Query: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
                ++S +    +ISW  KK+ +  A+           ++  FNC      +  P+ K
Sbjct: 272 TASINLNS-VEVPQIISWLSKKAHVKPAE-----------VLRTFNCGIGMVIIVHPDNK 319


>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 463

 Score = 23.5 bits (49), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 70  VIPTSISYGTIKIICRKKYFDITTLRSDLITDG 102
            + + I Y    +I +K + + TTL+ + I  G
Sbjct: 411 ALTSKIGYDNASMIAKKAHHNSTTLKEEAIASG 443


>gi|254780457|ref|YP_003064870.1| cytidylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 217

 Score = 23.5 bits (49), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 132 QGKVIDYVGGLNDLRNR 148
           +G+ +DYV  L DLRNR
Sbjct: 155 RGEKVDYVKILEDLRNR 171


>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 492

 Score = 23.5 bits (49), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQD 344
           F ++G    +AK K+F AL YNN T+++
Sbjct: 13  FIIFGGTGDLAKRKLFPAL-YNNYTNRE 39


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 271,822
Number of Sequences: 1233
Number of extensions: 11319
Number of successful extensions: 51
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 15
length of query: 416
length of database: 328,796
effective HSP length: 76
effective length of query: 340
effective length of database: 235,088
effective search space: 79929920
effective search space used: 79929920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)