HHsearch alignment for GI: 254781118 and conserved domain: COG0172
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=96.67 E-value=0.0032 Score=39.93 Aligned_cols=123 Identities=24% Similarity=0.331 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCC-----CCEEEEECCCCCCCCCCCHHHH-----HHHHHHHCC-C
Q ss_conf 899999999873855345431156532356---6655-----4203641222225432100122-----344442102-4
Q gi|254781118|r 178 QRSLLISQIRHFMEKKGFMEVETPILQPIY---GGAT-----ADPFKTHHNILKADMYLRIAPE-----LYLKRVLIS-G 243 (502)
Q Consensus 178 ~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~---~g~~-----~~~F~~~~~~~~~~~yL~qSpq-----l~~k~l~~~-G 243 (502)
T Consensus 176 L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~----~~~~~LipTaEvpl~~l~~~Eil~~~~ 251 (429)
T COG0172 176 LERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVE----DPDLYLIPTAEVPLTNLHRDEILDEED 251 (429)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCEEECHHHHHCCCCCCCCCCCCEEEC----CCCEEEEECCHHHHHHHHCCCCCCCCC
T ss_conf 9999999999999876965865760605988622378988801215845----898799702021567865162015212
Q ss_pred CCHHHHHHHHHHCCCC-C---CC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 3024543453202542-3---44---32452100010011000111245678999988998708861311
Q gi|254781118|r 244 LTDQVFELNRNFRNEG-V---SS---RHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPF 306 (502)
Q Consensus 244 ~~drvfeI~~~FR~E~-~---~~---~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~ 306 (502)
T Consensus 252 LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~-ae~il~~LeLPy 319 (429)
T COG0172 252 LPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGN-AEEVLQELELPY 319 (429)
T ss_pred CCEEEEEECHHHHCCCCCCCCCCCCEEEEEEEEEEEEEE-EECCCHHHHHHHHHHHH-HHHHHHHHCCCC
T ss_conf 780267877254214565664355301466435589999-70701169999999999-999999708983