HHsearch alignment for GI: 254781118 and conserved domain: COG0173
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=820.11 Aligned_cols=441 Identities=28% Similarity=0.485 Sum_probs=354.8
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 788859999986515555643598899986881114877--218997799359999805427967888874237431689
Q gi|254781118|r 38 HRDITNAEVREKYSHLQNDEKSQDMITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIG 115 (502)
Q Consensus 38 ~~t~~~~e~~~~~~~l~~~~~~~~~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~ 115 (502)
T Consensus 1 ~Rt~~cg~l~~--------~~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~GivQvv~~~~-~~~~~~~~a~~lr~E~vi~ 71 (585)
T COG0173 1 MRTHYCGELRE--------SHVGQTVTLSGWVHRRRDHGGLIFIDLRDREGIVQVVFDPE-DSPEAFEVASRLRNEFVIQ 71 (585)
T ss_pred CCCEECCCCCH--------HHCCCEEEEEEEEEECCCCCCEEEEECCCCCCEEEEEECCC-CCHHHHHHHHHCCCEEEEE
T ss_conf 97432220478--------77898799976165402368768998446787079997887-6889999997268527999
Q ss_pred EEEEEECC---------CCCCCCCCCCEEEEECCCCCCCCCCCCC--CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96576305---------6655342122012211355543222125--311445420110012344444335788999999
Q gi|254781118|r 116 ITGQVRRT---------KRGELTVNAQKIIMLSKALNSIPETYYG--LSDVEIRYRKRYLDIISNSDSKIRFQQRSLLIS 184 (502)
Q Consensus 116 v~G~v~~~---------~~gelei~~~~~~~l~~~~~~lP~~~~~--~~d~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~ 184 (502)
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s-~~lPf~i~d~~~~~Ee~RLkYRyLDLRR-~~m~~~l~lR~kv~~ 149 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNAS-KTLPFQIEDETNASEEIRLKYRYLDLRR-PEMQKNLKLRSKVTK 149 (585)
T ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_conf 98899846755668888861499996268998647-8899477888886522202445556368-889999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 9987385534543115653235666554203641222225432-100122344442102430245434532025423443
Q gi|254781118|r 185 QIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMY-LRIAPELYLKRVLISGLTDQVFELNRNFRNEGVSSR 263 (502)
Q Consensus 185 ~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~y-L~qSpql~~k~l~~~G~~drvfeI~~~FR~E~~~~~ 263 (502)
T Consensus 150 ~iR~~ld~~gF~EiETPiLtkSTPEGARD-fLVPSRv~~G~FYALPQSPQlfKQLLMvsGf-dRYyQIarCFRDEDlRaD 227 (585)
T COG0173 150 AIRNFLDDQGFLEIETPILTKSTPEGARD-FLVPSRVHPGKFYALPQSPQLFKQLLMVAGF-DRYYQIARCFRDEDLRAD 227 (585)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCHHHHHHHHHHHCC-CCEEEEEEEECCCCCCCC
T ss_conf 99997765498573467414679865544-3013455899653068887999999988053-300235654046644444
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CC------------CCCCCEEECCCCCCCEEEEECCCCC--
Q ss_conf 24521000100110001112456789999889987088-61------------3117534113322100000002334--
Q gi|254781118|r 264 HNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGT-TD------------IPFGEKVISFKAPFACKSMLQLVKE-- 328 (502)
Q Consensus 264 H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~-~~------------~~~~~~~~d~~~~f~~~~~~e~i~~-- 328 (502)
T Consensus 228 RQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~ 307 (585)
T COG0173 228 RQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSE 307 (585)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHCCCC
T ss_conf 68753367677643889999999999999999985097548985610599999973899985568835212798744788
Q ss_pred -----------------------------------------CCCCCCCCCCCH------------HHHHHHHHHHCCCCC
Q ss_conf -----------------------------------------488621543321------------677765652023543
Q gi|254781118|r 329 -----------------------------------------ATGLDFMLLKSD------------QEARVAAQSIGITVE 355 (502)
Q Consensus 329 -----------------------------------------~~g~~~~~~~~~------------e~~~~~~~~~g~~~~ 355 (502)
T Consensus 308 F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~g 387 (585)
T COG0173 308 FKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDG 387 (585)
T ss_pred CCEEHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf 51303145069827999847866468899999999999749874389997168766617764478999999998287778
Q ss_pred C------------CCCHHHHHHHHHHH--CCCHHEECCEEEECCCH------------HHHHHHCCCCCCH---------
Q ss_conf 3------------22318999887652--13010105435655800------------2345303579672---------
Q gi|254781118|r 356 N------------DALWGEVMMTIFEE--KIEKNIVNPTHITDFPK------------DISPFAKEVAGEK--------- 400 (502)
Q Consensus 356 ~------------~~~~g~l~~~~~e~--~ie~~~~~p~fI~dfP~------------~~~Pf~~~~~~~~--------- 400 (502)
T Consensus 388 D~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~ 467 (585)
T COG0173 388 DIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPES 467 (585)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHCCHHH
T ss_conf 88999669488999988999999888738778343248999706766775345867404488789984424454169777
Q ss_pred HHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCC
Q ss_conf 11011135555787200211005799999999999988730573354508999997608698461324689998998262
Q gi|254781118|r 401 RLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA 480 (502)
Q Consensus 401 ~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~ 480 (502)
T Consensus 468 ~~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~e---ea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~ 544 (585)
T COG0173 468 VRARAYDLVLNGYELGGGSIRIHDPEIQEKVFEILGISPE---EAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGA 544 (585)
T ss_pred HHHHHCCEEECCEEECCCEEEECCHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCC
T ss_conf 6453256776027513543640788999999998199989---9998877899997658999762424599999998289
Q ss_pred CCCEECCCCCCCCCCC
Q ss_conf 8840412786757667
Q gi|254781118|r 481 PSIRDVILFPAQRVKN 496 (502)
Q Consensus 481 ~~IRdvi~FP~~k~~~ 496 (502)
T Consensus 545 ~sIReVIAFP--Kt~~ 558 (585)
T COG0173 545 ESIRDVIAFP--KTQQ 558 (585)
T ss_pred CCHHHEEECC--CCCC
T ss_conf 7444213147--8865