HHsearch alignment for GI: 254781118 and conserved domain: COG0173

>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=820.11  Aligned_cols=441  Identities=28%  Similarity=0.485  Sum_probs=354.8

Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             788859999986515555643598899986881114877--218997799359999805427967888874237431689
Q gi|254781118|r   38 HRDITNAEVREKYSHLQNDEKSQDMITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIG  115 (502)
Q Consensus        38 ~~t~~~~e~~~~~~~l~~~~~~~~~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~  115 (502)
T Consensus         1 ~Rt~~cg~l~~--------~~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~GivQvv~~~~-~~~~~~~~a~~lr~E~vi~   71 (585)
T COG0173           1 MRTHYCGELRE--------SHVGQTVTLSGWVHRRRDHGGLIFIDLRDREGIVQVVFDPE-DSPEAFEVASRLRNEFVIQ   71 (585)
T ss_pred             CCCEECCCCCH--------HHCCCEEEEEEEEEECCCCCCEEEEECCCCCCEEEEEECCC-CCHHHHHHHHHCCCEEEEE
T ss_conf             97432220478--------77898799976165402368768998446787079997887-6889999997268527999


Q ss_pred             EEEEEECC---------CCCCCCCCCCEEEEECCCCCCCCCCCCC--CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             96576305---------6655342122012211355543222125--311445420110012344444335788999999
Q gi|254781118|r  116 ITGQVRRT---------KRGELTVNAQKIIMLSKALNSIPETYYG--LSDVEIRYRKRYLDIISNSDSKIRFQQRSLLIS  184 (502)
Q Consensus       116 v~G~v~~~---------~~gelei~~~~~~~l~~~~~~lP~~~~~--~~d~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~  184 (502)
T Consensus        72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s-~~lPf~i~d~~~~~Ee~RLkYRyLDLRR-~~m~~~l~lR~kv~~  149 (585)
T COG0173          72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNAS-KTLPFQIEDETNASEEIRLKYRYLDLRR-PEMQKNLKLRSKVTK  149 (585)
T ss_pred             EEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_conf             98899846755668888861499996268998647-8899477888886522202445556368-889999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9987385534543115653235666554203641222225432-100122344442102430245434532025423443
Q gi|254781118|r  185 QIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMY-LRIAPELYLKRVLISGLTDQVFELNRNFRNEGVSSR  263 (502)
Q Consensus       185 ~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~y-L~qSpql~~k~l~~~G~~drvfeI~~~FR~E~~~~~  263 (502)
T Consensus       150 ~iR~~ld~~gF~EiETPiLtkSTPEGARD-fLVPSRv~~G~FYALPQSPQlfKQLLMvsGf-dRYyQIarCFRDEDlRaD  227 (585)
T COG0173         150 AIRNFLDDQGFLEIETPILTKSTPEGARD-FLVPSRVHPGKFYALPQSPQLFKQLLMVAGF-DRYYQIARCFRDEDLRAD  227 (585)
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCHHHHHHHHHHHCC-CCEEEEEEEECCCCCCCC
T ss_conf             99997765498573467414679865544-3013455899653068887999999988053-300235654046644444


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CC------------CCCCCEEECCCCCCCEEEEECCCCC--
Q ss_conf             24521000100110001112456789999889987088-61------------3117534113322100000002334--
Q gi|254781118|r  264 HNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGT-TD------------IPFGEKVISFKAPFACKSMLQLVKE--  328 (502)
Q Consensus       264 H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~-~~------------~~~~~~~~d~~~~f~~~~~~e~i~~--  328 (502)
T Consensus       228 RQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~  307 (585)
T COG0173         228 RQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSE  307 (585)
T ss_pred             CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHCCCC
T ss_conf             68753367677643889999999999999999985097548985610599999973899985568835212798744788


Q ss_pred             -----------------------------------------CCCCCCCCCCCH------------HHHHHHHHHHCCCCC
Q ss_conf             -----------------------------------------488621543321------------677765652023543
Q gi|254781118|r  329 -----------------------------------------ATGLDFMLLKSD------------QEARVAAQSIGITVE  355 (502)
Q Consensus       329 -----------------------------------------~~g~~~~~~~~~------------e~~~~~~~~~g~~~~  355 (502)
T Consensus       308 F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~g  387 (585)
T COG0173         308 FKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDG  387 (585)
T ss_pred             CCEEHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf             51303145069827999847866468899999999999749874389997168766617764478999999998287778


Q ss_pred             C------------CCCHHHHHHHHHHH--CCCHHEECCEEEECCCH------------HHHHHHCCCCCCH---------
Q ss_conf             3------------22318999887652--13010105435655800------------2345303579672---------
Q gi|254781118|r  356 N------------DALWGEVMMTIFEE--KIEKNIVNPTHITDFPK------------DISPFAKEVAGEK---------  400 (502)
Q Consensus       356 ~------------~~~~g~l~~~~~e~--~ie~~~~~p~fI~dfP~------------~~~Pf~~~~~~~~---------  400 (502)
T Consensus       388 D~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~  467 (585)
T COG0173         388 DIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPES  467 (585)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHCCHHH
T ss_conf             88999669488999988999999888738778343248999706766775345867404488789984424454169777


Q ss_pred             HHEEECCEEECCEEEEECHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCC
Q ss_conf             11011135555787200211005799999999999988730573354508999997608698461324689998998262
Q gi|254781118|r  401 RLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNA  480 (502)
Q Consensus       401 ~~~~~fdl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~  480 (502)
T Consensus       468 ~~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~e---ea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~  544 (585)
T COG0173         468 VRARAYDLVLNGYELGGGSIRIHDPEIQEKVFEILGISPE---EAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGA  544 (585)
T ss_pred             HHHHHCCEEECCEEECCCEEEECCHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCC
T ss_conf             6453256776027513543640788999999998199989---9998877899997658999762424599999998289


Q ss_pred             CCCEECCCCCCCCCCC
Q ss_conf             8840412786757667
Q gi|254781118|r  481 PSIRDVILFPAQRVKN  496 (502)
Q Consensus       481 ~~IRdvi~FP~~k~~~  496 (502)
T Consensus       545 ~sIReVIAFP--Kt~~  558 (585)
T COG0173         545 ESIRDVIAFP--KTQQ  558 (585)
T ss_pred             CCHHHEEECC--CCCC
T ss_conf             7444213147--8865