HHsearch alignment for GI: 254781118 and conserved domain: COG2269

>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=440.70  Aligned_cols=300  Identities=36%  Similarity=0.592  Sum_probs=268.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEC----CCCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf             3578899999999873855345431156532356-665542036412----22225432100122344442102430245
Q gi|254781118|r  174 IRFQQRSLLISQIRHFMEKKGFMEVETPILQPIY-GGATADPFKTHH----NILKADMYLRIAPELYLKRVLISGLTDQV  248 (502)
Q Consensus       174 ~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~-~g~~~~~F~~~~----~~~~~~~yL~qSpql~~k~l~~~G~~drv  248 (502)
T Consensus        14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~-~~i   92 (322)
T COG2269          14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGS-GPI   92 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHCCC-CCC
T ss_conf             9999899999999999987692585336765078986423445667654676665303665680777899997548-860


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCC
Q ss_conf             43453202542344324521000100110001112456789999889987088613117534113322100000002334
Q gi|254781118|r  249 FELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISFKAPFACKSMLQLVKE  328 (502)
Q Consensus       249 feI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~~~~f~~~~~~e~i~~  328 (502)
T Consensus        93 fql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~-----------------~~E~ls~~eaF~r  155 (322)
T COG2269          93 FQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECV-----------------EAERLSYQEAFLR  155 (322)
T ss_pred             HHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC-----------------CCCEEEHHHHHHH
T ss_conf             14547772633256679843676510067859999999999999997037-----------------8535559999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEE--CCEEEECCCHHHHHHHCCCCCCHHHEEEC
Q ss_conf             4886215433216777656520235433223189998876521301010--54356558002345303579672110111
Q gi|254781118|r  329 ATGLDFMLLKSDQEARVAAQSIGITVENDALWGEVMMTIFEEKIEKNIV--NPTHITDFPKDISPFAKEVAGEKRLVERF  406 (502)
Q Consensus       329 ~~g~~~~~~~~~e~~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~~--~p~fI~dfP~~~~Pf~~~~~~~~~~~~~f  406 (502)
T Consensus       156 ~~gid~l~-~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~~~D~rVAERF  234 (322)
T COG2269         156 YLGIDPLS-ADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALAQISTGDPRVAERF  234 (322)
T ss_pred             HHCCCCCC-CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCHHHHH
T ss_conf             83889452-42999999998558777775589999999888640756688884488727277887604677896256664


Q ss_pred             CEEECCEEEEECHHEECCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEE
Q ss_conf             3555578720021100579999999999998873-057335450899999760869846132468999899826288404
Q gi|254781118|r  407 ETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSH-QRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNAPSIRD  485 (502)
Q Consensus       407 dl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~-~~~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~~~IRd  485 (502)
T Consensus       235 ElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Al~~-mP~cSGvALG~DRLvmLalg~~~i~~  313 (322)
T COG2269         235 ELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESIDD  313 (322)
T ss_pred             HHEEEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-CCCCCCCEECHHHHHHHHCCCCHHHH
T ss_conf             32010022102400017889999999998899986378877788789999985-89865413238899999818214877


Q ss_pred             CCCCCCCC
Q ss_conf             12786757
Q gi|254781118|r  486 VILFPAQR  493 (502)
Q Consensus       486 vi~FP~~k  493 (502)
T Consensus       314 Vi~f~v~~  321 (322)
T COG2269         314 VIAFPVAR  321 (322)
T ss_pred             HHHCCCCC
T ss_conf             76131146