HHsearch alignment for GI: 254781118 and conserved domain: COG2269
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=440.70 Aligned_cols=300 Identities=36% Similarity=0.592 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEC----CCCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 3578899999999873855345431156532356-665542036412----22225432100122344442102430245
Q gi|254781118|r 174 IRFQQRSLLISQIRHFMEKKGFMEVETPILQPIY-GGATADPFKTHH----NILKADMYLRIAPELYLKRVLISGLTDQV 248 (502)
Q Consensus 174 ~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~-~g~~~~~F~~~~----~~~~~~~yL~qSpql~~k~l~~~G~~drv 248 (502)
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~-~~i 92 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGS-GPI 92 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHCCC-CCC
T ss_conf 9999899999999999987692585336765078986423445667654676665303665680777899997548-860
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCC
Q ss_conf 43453202542344324521000100110001112456789999889987088613117534113322100000002334
Q gi|254781118|r 249 FELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKVISFKAPFACKSMLQLVKE 328 (502)
Q Consensus 249 feI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~~d~~~~f~~~~~~e~i~~ 328 (502)
T Consensus 93 fql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~-----------------~~E~ls~~eaF~r 155 (322)
T COG2269 93 FQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECV-----------------EAERLSYQEAFLR 155 (322)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC-----------------CCCEEEHHHHHHH
T ss_conf 14547772633256679843676510067859999999999999997037-----------------8535559999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEE--CCEEEECCCHHHHHHHCCCCCCHHHEEEC
Q ss_conf 4886215433216777656520235433223189998876521301010--54356558002345303579672110111
Q gi|254781118|r 329 ATGLDFMLLKSDQEARVAAQSIGITVENDALWGEVMMTIFEEKIEKNIV--NPTHITDFPKDISPFAKEVAGEKRLVERF 406 (502)
Q Consensus 329 ~~g~~~~~~~~~e~~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~~--~p~fI~dfP~~~~Pf~~~~~~~~~~~~~f 406 (502)
T Consensus 156 ~~gid~l~-~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~~~D~rVAERF 234 (322)
T COG2269 156 YLGIDPLS-ADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALAQISTGDPRVAERF 234 (322)
T ss_pred HHCCCCCC-CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCHHHHH
T ss_conf 83889452-42999999998558777775589999999888640756688884488727277887604677896256664
Q ss_pred CEEECCEEEEECHHEECCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEE
Q ss_conf 3555578720021100579999999999998873-057335450899999760869846132468999899826288404
Q gi|254781118|r 407 ETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSH-QRGEHTILDEDFLDAMTYGMPPASGLGLGIDRLIMLLTNAPSIRD 485 (502)
Q Consensus 407 dl~~~G~Ei~~G~~e~~dp~~q~~r~~~~~~~~~-~~~~~~~~~~~yl~a~~yG~PPhgG~glGldRL~m~l~g~~~IRd 485 (502)
T Consensus 235 ElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Al~~-mP~cSGvALG~DRLvmLalg~~~i~~ 313 (322)
T COG2269 235 ELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESIDD 313 (322)
T ss_pred HHEEEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-CCCCCCCEECHHHHHHHHCCCCHHHH
T ss_conf 32010022102400017889999999998899986378877788789999985-89865413238899999818214877
Q ss_pred CCCCCCCC
Q ss_conf 12786757
Q gi|254781118|r 486 VILFPAQR 493 (502)
Q Consensus 486 vi~FP~~k 493 (502)
T Consensus 314 Vi~f~v~~ 321 (322)
T COG2269 314 VIAFPVAR 321 (322)
T ss_pred HHHCCCCC
T ss_conf 76131146