HHsearch alignment for GI: 254781118 and conserved domain: COG5235

>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair].

Probab=93.84  E-value=0.39  Score=26.54  Aligned_cols=93  Identities=15%  Similarity=0.252  Sum_probs=58.1

Q ss_pred             CCCCHHHHHHHHCCCC------CCCCCCCEEEEEEEECCCCCCC--CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf             8885999998651555------5643598899986881114877--2189977993599998054279678888742374
Q gi|254781118|r   39 RDITNAEVREKYSHLQ------NDEKSQDMITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDI  110 (502)
Q Consensus        39 ~t~~~~e~~~~~~~l~------~~~~~~~~V~i~Grv~~~R~~G--~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~  110 (502)
T Consensus        40 rpvTIKQIl~~~qd~~d~~f~vd~~Ev-~~V~fVGvvrni~~~ttn~~~~iEDGTG~Ievr~W~~~~~~~--e~~~d~~~  116 (258)
T COG5235          40 RPVTIKQILSCDQDETDSTFLVDSAEV-TNVQFVGVVRNIKTSTTNSMFVIEDGTGSIEVRFWPGNSYEE--EQCKDLEE  116 (258)
T ss_pred             EEEEHHHHHCCCCCCCCCCEEECCEEE-EEEEEEEEEEEEEECCCCEEEEEECCCCEEEEEECCCCCHHH--HHCCCCCC
T ss_conf             146887753554423578556624188-668999999840103454189993487428988568872377--75434332


Q ss_pred             CEEEEEEEEEECCCCCCCCCCCCEE
Q ss_conf             3168996576305665534212201
Q gi|254781118|r  111 GDIIGITGQVRRTKRGELTVNAQKI  135 (502)
Q Consensus       111 gd~i~v~G~v~~~~~gelei~~~~~  135 (502)
T Consensus       117 ~~yvkV~G~lk-~F~GK~~I~~~~i  140 (258)
T COG5235         117 QNYVKVNGSLK-TFNGKRSISASHI  140 (258)
T ss_pred             CCEEEEECCEE-EECCEEEEEHHHE
T ss_conf             66799942112-2078057741005