HHsearch alignment for GI: 254781118 and conserved domain: PRK07373
>PRK07373 DNA polymerase III subunit alpha; Reviewed.
Probab=97.01 E-value=0.0076 Score=37.54 Aligned_cols=153 Identities=12% Similarity=0.278 Sum_probs=82.2
Q ss_pred CCCCCEEEEEEEECCCC----CCC---CEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 43598899986881114----877---21899779935999980542796788887423743168996576305665534
Q gi|254781118|r 57 EKSQDMITVAGRVYSSR----NSG---MFMDIHDASGKIQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKRGELT 129 (502)
Q Consensus 57 ~~~~~~V~i~Grv~~~R----~~G---~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~gele 129 (502)
T Consensus 275 ~~~~~~V~~~g~I~~vr~~~TKkG~~MAfvtLeD~tG~iEvvvFpe----~ye~~~~~L~~d~ivlv~Gkv~~r-d~~~~ 349 (447)
T PRK07373 275 QKERTKVSAVVMLNGVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPK----SYERIQELLQEDSRLIIWGKVDRR-DDQVQ 349 (447)
T ss_pred CCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEHH----HHHHHHHHHCCCCEEEEEEEEEEE-CCCEE
T ss_conf 2489789999999999998704896599999997897489998089----999998873379989999999987-89378
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHCCCCCCCCC
Q ss_conf 2122012211355543222125311445420110012344444335788999999998738553-454-31156532356
Q gi|254781118|r 130 VNAQKIIMLSKALNSIPETYYGLSDVEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKK-GFM-EVETPILQPIY 207 (502)
Q Consensus 130 i~~~~~~~l~~~~~~lP~~~~~~~d~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~-gF~-EveTP~L~~~~ 207 (502)
T Consensus 350 liv~~i~-------~l~---------~~~~--~~i~l~~~-~~~-~~~----~~~~L~~iL~~~~g~~~~G~~PV~l~~~ 405 (447)
T PRK07373 350 LIVEDAE-------PIE---------EVKM--VMVELSPQ-QAG-NIQ----SQQRLKEILQEQAGDKEKAKVPVIAIIG 405 (447)
T ss_pred EEEEECC-------CHH---------HHHH--HHEECCHH-HCC-CHH----HHHHHHHHHHHCCCCCCCCCCCEEEEEE
T ss_conf 9980035-------588---------8866--66146876-715-878----9999999998567974578643899998
Q ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 6655420364122222543210012234444210243
Q gi|254781118|r 208 GGATADPFKTHHNILKADMYLRIAPELYLKRVLISGL 244 (502)
Q Consensus 208 ~g~~~~~F~~~~~~~~~~~yL~qSpql~~k~l~~~G~ 244 (502)
T Consensus 406 ~~~~~~~l~-----Lg~~~~V~p~~~ll-~~Lr~~~~ 436 (447)
T PRK07373 406 DGQDRQFVR-----LGQQFWVEDDRSAV-QALQNAGF 436 (447)
T ss_pred CCCCEEEEE-----CCCCCCCCCCHHHH-HHHHHCCC
T ss_conf 798279998-----49867178629999-99985898