HHsearch alignment for GI: 254781118 and conserved domain: PRK12420
>PRK12420 histidyl-tRNA synthetase; Provisional.
Probab=98.79 E-value=3.2e-08 Score=72.14 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCC---CCEEEEECCCCCCCCCCCHHHHHH--HHHHHC-CC
Q ss_conf 788999999998738553454311565323------566655---420364122222543210012234--444210-24
Q gi|254781118|r 176 FQQRSLLISQIRHFMEKKGFMEVETPILQP------IYGGAT---ADPFKTHHNILKADMYLRIAPELY--LKRVLI-SG 243 (502)
Q Consensus 176 l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~------~~~g~~---~~~F~~~~~~~~~~~yL~qSpql~--~k~l~~-~G 243 (502)
T Consensus 18 ~~~~~~i~~~~~~~~~~~Gy~~I~tP~~E~~elf~~~~g~~~~i~kemy~f~-D~~gr~l~LRP--e~Ta~iaR~~a~~~ 94 (421)
T PRK12420 18 QVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQ-DQGKRDLALRY--DLTIPFAKVVAMNP 94 (421)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCHHHHHEEEEE-CCCCCEEEECC--CCCHHHHHHHHHCC
T ss_conf 9999999999999999859947247650118764244788442241107888-18998798567--76589999999775
Q ss_pred ---CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHH
Q ss_conf ---302454345320254234432452100010011000111245678--9999889987
Q gi|254781118|r 244 ---LTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVE--DLCHNLAKTL 298 (502)
Q Consensus 244 ---~~drvfeI~~~FR~E~~~~~H~pEFt~lE~e~a~~d~~dim~l~E--~li~~i~~~~ 298 (502)
T Consensus 95 ~~~~P~k~~y~g~vfR~erpq~GR~ReF~Q~GvEiiG~~--~~~aDaEiI~la~~~l~~l 152 (421)
T PRK12420 95 NIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVE--SVMAEAELMSMAFELFRTL 152 (421)
T ss_pred CCCCCEEEEEECCEEECCCCCCCCCCEEEECCEEEECCC--CHHHHHHHHHHHHHHHHHC
T ss_conf 777874588876778538987885551343575420788--7788999999999999965