HHsearch alignment for GI: 254781118 and conserved domain: cd00772

>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.06  E-value=1.4e-05  Score=55.22  Aligned_cols=117  Identities=16%  Similarity=0.126  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC----CCCCCEEEEECCC---CCCCCCCCHHHH-----HHHH
Q ss_conf             5788999999998738553454311565323-----566----6554203641222---225432100122-----3444
Q gi|254781118|r  175 RFQQRSLLISQIRHFMEKKGFMEVETPILQP-----IYG----GATADPFKTHHNI---LKADMYLRIAPE-----LYLK  237 (502)
Q Consensus       175 ~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~-----~~~----g~~~~~F~~~~~~---~~~~~yL~qSpq-----l~~k  237 (502)
T Consensus        31 G~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~ksgr~~~~~~~e~~~~~~~~~~~~e~~~~L~PT~Ee~~~~~~~~  110 (264)
T cd00772          31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAK  110 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999999999999999829949812567998999976984443785237997348742123520167786899999986


Q ss_pred             HHHCC--CCCHHHHHHHHHHCCCCC-CC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             42102--430245434532025423-44--324521000100110001112456789999
Q gi|254781118|r  238 RVLIS--GLTDQVFELNRNFRNEGV-SS--RHNPEFTMIEAYWAYTDYRDMMKLVEDLCH  292 (502)
Q Consensus       238 ~l~~~--G~~drvfeI~~~FR~E~~-~~--~H~pEFt~lE~e~a~~d~~dim~l~E~li~  292 (502)
T Consensus       111 ~-i~SyrdLPl~lyQ~~~~fR~E~r~r~GllR~REFlmkDahsf~~t~e~a~~~y~~~~~  169 (264)
T cd00772         111 F-IKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLS  169 (264)
T ss_pred             H-CCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             4-0766557977876557860578855433232043411035325999999999999999