HHsearch alignment for GI: 254781118 and conserved domain: cd00772
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.06 E-value=1.4e-05 Score=55.22 Aligned_cols=117 Identities=16% Similarity=0.126 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC----CCCCCEEEEECCC---CCCCCCCCHHHH-----HHHH
Q ss_conf 5788999999998738553454311565323-----566----6554203641222---225432100122-----3444
Q gi|254781118|r 175 RFQQRSLLISQIRHFMEKKGFMEVETPILQP-----IYG----GATADPFKTHHNI---LKADMYLRIAPE-----LYLK 237 (502)
Q Consensus 175 ~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~-----~~~----g~~~~~F~~~~~~---~~~~~yL~qSpq-----l~~k 237 (502)
T Consensus 31 G~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~ksgr~~~~~~~e~~~~~~~~~~~~e~~~~L~PT~Ee~~~~~~~~ 110 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAK 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999999999829949812567998999976984443785237997348742123520167786899999986
Q ss_pred HHHCC--CCCHHHHHHHHHHCCCCC-CC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 42102--430245434532025423-44--324521000100110001112456789999
Q gi|254781118|r 238 RVLIS--GLTDQVFELNRNFRNEGV-SS--RHNPEFTMIEAYWAYTDYRDMMKLVEDLCH 292 (502)
Q Consensus 238 ~l~~~--G~~drvfeI~~~FR~E~~-~~--~H~pEFt~lE~e~a~~d~~dim~l~E~li~ 292 (502)
T Consensus 111 ~-i~SyrdLPl~lyQ~~~~fR~E~r~r~GllR~REFlmkDahsf~~t~e~a~~~y~~~~~ 169 (264)
T cd00772 111 F-IKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLS 169 (264)
T ss_pred H-CCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 4-0766557977876557860578855433232043411035325999999999999999