HHsearch alignment for GI: 254781118 and conserved domain: cd00776

>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00  E-value=0  Score=634.37  Aligned_cols=314  Identities=31%  Similarity=0.514  Sum_probs=258.4

Q ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf             11445420110012344444335788999999998738553454311565323566655420364122222543210012
Q gi|254781118|r  153 SDVEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAP  232 (502)
Q Consensus       153 ~d~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSp  232 (502)
T Consensus         2 ~~~e~r~~~R~Ldlr~-~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~eg~a~~f~~~--~~~~~~yL~~Sp   78 (322)
T cd00776           2 ANLETLLDNRHLDLRT-PKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVS--YFGKPAYLAQSP   78 (322)
T ss_pred             CCHHHHHCCCCEECCC-HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCEEECCCH
T ss_conf             7978876164124289-8799999999999999999999889999979840078898654667621--058760015485


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             234444210243024543453202542344-3245210001001100-01112456789999889987088613117534
Q gi|254781118|r  233 ELYLKRVLISGLTDQVFELNRNFRNEGVSS-RHNPEFTMIEAYWAYT-DYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKV  310 (502)
Q Consensus       233 ql~~k~l~~~G~~drvfeI~~~FR~E~~~~-~H~pEFt~lE~e~a~~-d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~  310 (502)
T Consensus        79 el~K-qlli~G~-~rVfei~~~FR~E~~~t~rH~pEFTmlE~e~af~~d~~d~m~~~E~li~~i~~~v~~~~~~~~----  152 (322)
T cd00776          79 QLYK-EMLIAAL-ERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKEL----  152 (322)
T ss_pred             HHHH-HHHHCCC-CCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf             8899-9975342-443887261407999875347888765255523328999999999999999999986526788----


Q ss_pred             ECCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHE-ECCEEEECCCHHH
Q ss_conf             113322100000002334488621543321677765652023543322318999887652130101-0543565580023
Q gi|254781118|r  311 ISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALWGEVMMTIFEEKIEKNI-VNPTHITDFPKDI  389 (502)
Q Consensus       311 ~d~~~~f~~~~~~e~i~~~~g~~~~~~~~~e~~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~-~~p~fI~dfP~~~  389 (502)
T Consensus       153 -~~------~~~~~~~~~~~~~~~~r~~~~ea~~~l-~~~~~--~~~~~~~~dl~~~~e~~l~~~~~~~p~fv~d~P~~~  222 (322)
T cd00776         153 -EL------VNQLNRELLKPLEPFPRITYDEAIELL-REKGV--EEEVKWGEDLSTEHERLLGEIVKGDPVFVTDYPKEI  222 (322)
T ss_pred             -HH------HHHCCCCCCCCCCCCCCCCHHHHHHHH-HHCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHC
T ss_conf             -99------875121100247996424199999999-85699--668776663376999999999658988997974421


Q ss_pred             HHHH-CCCCCCHHHEEECCEEECCE-EEEECHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEE
Q ss_conf             4530-35796721101113555578-720021100579999999999998873057335450899999760869846132
Q gi|254781118|r  390 SPFA-KEVAGEKRLVERFETYCNGW-EICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLG  467 (502)
Q Consensus       390 ~Pf~-~~~~~~~~~~~~fdl~~~G~-Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~~~~~~yl~a~~yG~PPhgG~g  467 (502)
T Consensus       223 ~pfy~~~~~~~~~~~~rfel~~~G~~El~~g~~r~~d~~~l~~r~~~-------~g~~~~~~~~yl~al~~G~PP~gG~g  295 (322)
T cd00776         223 KPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKE-------HGLDPESFEWYLDLRKYGMPPHGGFG  295 (322)
T ss_pred             CCCCCCCCCCCHHHHHHHHEECCCCEEECCHHHHHCCHHHHHHHHHH-------CCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             97658866885455454200128927867766640899999999998-------59997899999999766999972454


Q ss_pred             CCHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf             4689998998262884041278675
Q gi|254781118|r  468 LGIDRLIMLLTNAPSIRDVILFPAQ  492 (502)
Q Consensus       468 lGldRL~m~l~g~~~IRdvi~FP~~  492 (502)
T Consensus       296 lGiDRLvmll~g~~~Irdvi~FPr~  320 (322)
T cd00776         296 LGLERLVMWLLGLDNIREAILFPRD  320 (322)
T ss_pred             EHHHHHHHHHCCCCCHHHEECCCCC
T ss_conf             3899999998299727605138999