HHsearch alignment for GI: 254781118 and conserved domain: cd00776
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=0 Score=634.37 Aligned_cols=314 Identities=31% Similarity=0.514 Sum_probs=258.4
Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 11445420110012344444335788999999998738553454311565323566655420364122222543210012
Q gi|254781118|r 153 SDVEIRYRKRYLDIISNSDSKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMYLRIAP 232 (502)
Q Consensus 153 ~d~e~rl~~R~LDl~~~~~~~~~l~~Rs~i~~~iR~~l~~~gF~EveTP~L~~~~~g~~~~~F~~~~~~~~~~~yL~qSp 232 (502)
T Consensus 2 ~~~e~r~~~R~Ldlr~-~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~eg~a~~f~~~--~~~~~~yL~~Sp 78 (322)
T cd00776 2 ANLETLLDNRHLDLRT-PKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVS--YFGKPAYLAQSP 78 (322)
T ss_pred CCHHHHHCCCCEECCC-HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCEEECCCH
T ss_conf 7978876164124289-8799999999999999999999889999979840078898654667621--058760015485
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 234444210243024543453202542344-3245210001001100-01112456789999889987088613117534
Q gi|254781118|r 233 ELYLKRVLISGLTDQVFELNRNFRNEGVSS-RHNPEFTMIEAYWAYT-DYRDMMKLVEDLCHNLAKTLHGTTDIPFGEKV 310 (502)
Q Consensus 233 ql~~k~l~~~G~~drvfeI~~~FR~E~~~~-~H~pEFt~lE~e~a~~-d~~dim~l~E~li~~i~~~~~~~~~~~~~~~~ 310 (502)
T Consensus 79 el~K-qlli~G~-~rVfei~~~FR~E~~~t~rH~pEFTmlE~e~af~~d~~d~m~~~E~li~~i~~~v~~~~~~~~---- 152 (322)
T cd00776 79 QLYK-EMLIAAL-ERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKEL---- 152 (322)
T ss_pred HHHH-HHHHCCC-CCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 8899-9975342-443887261407999875347888765255523328999999999999999999986526788----
Q ss_pred ECCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHE-ECCEEEECCCHHH
Q ss_conf 113322100000002334488621543321677765652023543322318999887652130101-0543565580023
Q gi|254781118|r 311 ISFKAPFACKSMLQLVKEATGLDFMLLKSDQEARVAAQSIGITVENDALWGEVMMTIFEEKIEKNI-VNPTHITDFPKDI 389 (502)
Q Consensus 311 ~d~~~~f~~~~~~e~i~~~~g~~~~~~~~~e~~~~~~~~~g~~~~~~~~~g~l~~~~~e~~ie~~~-~~p~fI~dfP~~~ 389 (502)
T Consensus 153 -~~------~~~~~~~~~~~~~~~~r~~~~ea~~~l-~~~~~--~~~~~~~~dl~~~~e~~l~~~~~~~p~fv~d~P~~~ 222 (322)
T cd00776 153 -EL------VNQLNRELLKPLEPFPRITYDEAIELL-REKGV--EEEVKWGEDLSTEHERLLGEIVKGDPVFVTDYPKEI 222 (322)
T ss_pred -HH------HHHCCCCCCCCCCCCCCCCHHHHHHHH-HHCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHC
T ss_conf -99------875121100247996424199999999-85699--668776663376999999999658988997974421
Q ss_pred HHHH-CCCCCCHHHEEECCEEECCE-EEEECHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEE
Q ss_conf 4530-35796721101113555578-720021100579999999999998873057335450899999760869846132
Q gi|254781118|r 390 SPFA-KEVAGEKRLVERFETYCNGW-EICNAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYGMPPASGLG 467 (502)
Q Consensus 390 ~Pf~-~~~~~~~~~~~~fdl~~~G~-Ei~~G~~e~~dp~~q~~r~~~~~~~~~~~~~~~~~~~~yl~a~~yG~PPhgG~g 467 (502)
T Consensus 223 ~pfy~~~~~~~~~~~~rfel~~~G~~El~~g~~r~~d~~~l~~r~~~-------~g~~~~~~~~yl~al~~G~PP~gG~g 295 (322)
T cd00776 223 KPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKE-------HGLDPESFEWYLDLRKYGMPPHGGFG 295 (322)
T ss_pred CCCCCCCCCCCHHHHHHHHEECCCCEEECCHHHHHCCHHHHHHHHHH-------CCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 97658866885455454200128927867766640899999999998-------59997899999999766999972454
Q ss_pred CCHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 4689998998262884041278675
Q gi|254781118|r 468 LGIDRLIMLLTNAPSIRDVILFPAQ 492 (502)
Q Consensus 468 lGldRL~m~l~g~~~IRdvi~FP~~ 492 (502)
T Consensus 296 lGiDRLvmll~g~~~Irdvi~FPr~ 320 (322)
T cd00776 296 LGLERLVMWLLGLDNIREAILFPRD 320 (322)
T ss_pred EHHHHHHHHHCCCCCHHHEECCCCC
T ss_conf 3899999998299727605138999