HHsearch alignment for GI: 254781118 and conserved domain: cd04318

>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.36  E-value=3.8e-12  Score=97.45  Aligned_cols=76  Identities=25%  Similarity=0.405  Sum_probs=66.1

Q ss_pred             EEEEEEEECCCCCCC--CEEEEECCCCE--EEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC--CCCCCCCCEE
Q ss_conf             899986881114877--21899779935--99998054279678888742374316899657630566--5534212201
Q gi|254781118|r   62 MITVAGRVYSSRNSG--MFMDIHDASGK--IQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKR--GELTVNAQKI  135 (502)
Q Consensus        62 ~V~i~Grv~~~R~~G--~Fi~LrD~~g~--iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~--gelei~~~~~  135 (502)
T Consensus         1 ~V~i~GWV~~~R~~~~i~Fi~L~DGS~~~~lQvV~~~~~~~---~~~~~~l~~gssv~v~G~l~~s~~~~q~~El~~~~i   77 (82)
T cd04318           1 EVTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTN---FKEILKLSTGSSIRVEGVLVKSPGAKQPFELQAEKI   77 (82)
T ss_pred             CEEEEEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCC---HHHHHCCCCCEEEEEEEEEECCCCCCCCEEEEEEEE
T ss_conf             99999868888648974999997898644389998377679---779844678539999999990899999999994499


Q ss_pred             EEECC
Q ss_conf             22113
Q gi|254781118|r  136 IMLSK  140 (502)
Q Consensus       136 ~~l~~  140 (502)
T Consensus        78 ~i~g~   82 (82)
T cd04318          78 EVLGE   82 (82)
T ss_pred             EEEEC
T ss_conf             99959