HHsearch alignment for GI: 254781118 and conserved domain: cd04318
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.36 E-value=3.8e-12 Score=97.45 Aligned_cols=76 Identities=25% Similarity=0.405 Sum_probs=66.1
Q ss_pred EEEEEEEECCCCCCC--CEEEEECCCCE--EEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC--CCCCCCCCEE
Q ss_conf 899986881114877--21899779935--99998054279678888742374316899657630566--5534212201
Q gi|254781118|r 62 MITVAGRVYSSRNSG--MFMDIHDASGK--IQIFTHKDTADQDSQNLLSMIDIGDIIGITGQVRRTKR--GELTVNAQKI 135 (502)
Q Consensus 62 ~V~i~Grv~~~R~~G--~Fi~LrD~~g~--iQv~~~~~~~~~~~~~~~~~l~~gd~i~v~G~v~~~~~--gelei~~~~~ 135 (502)
T Consensus 1 ~V~i~GWV~~~R~~~~i~Fi~L~DGS~~~~lQvV~~~~~~~---~~~~~~l~~gssv~v~G~l~~s~~~~q~~El~~~~i 77 (82)
T cd04318 1 EVTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTN---FKEILKLSTGSSIRVEGVLVKSPGAKQPFELQAEKI 77 (82)
T ss_pred CEEEEEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCC---HHHHHCCCCCEEEEEEEEEECCCCCCCCEEEEEEEE
T ss_conf 99999868888648974999997898644389998377679---779844678539999999990899999999994499
Q ss_pred EEECC
Q ss_conf 22113
Q gi|254781118|r 136 IMLSK 140 (502)
Q Consensus 136 ~~l~~ 140 (502)
T Consensus 78 ~i~g~ 82 (82)
T cd04318 78 EVLGE 82 (82)
T ss_pred EEEEC
T ss_conf 99959